Citrus Sinensis ID: 012774
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 456 | 2.2.26 [Sep-21-2011] | |||||||
| Q84P23 | 562 | 4-coumarate--CoA ligase-l | yes | no | 0.969 | 0.786 | 0.484 | 1e-120 | |
| Q8RU95 | 598 | 4-coumarate--CoA ligase-l | yes | no | 0.969 | 0.739 | 0.448 | 1e-106 | |
| Q7F1X5 | 542 | 4-coumarate--CoA ligase-l | yes | no | 0.916 | 0.771 | 0.443 | 1e-99 | |
| Q84P21 | 546 | 4-coumarate--CoA ligase-l | no | no | 0.956 | 0.798 | 0.424 | 1e-94 | |
| P0C5B6 | 550 | 4-coumarate--CoA ligase-l | no | no | 0.956 | 0.792 | 0.418 | 2e-91 | |
| Q3E6Y4 | 552 | 4-coumarate--CoA ligase-l | no | no | 0.956 | 0.789 | 0.410 | 7e-91 | |
| Q84P25 | 565 | 4-coumarate--CoA ligase-l | no | no | 0.938 | 0.757 | 0.417 | 9e-88 | |
| Q10S72 | 552 | 4-coumarate--CoA ligase-l | no | no | 0.967 | 0.798 | 0.412 | 3e-87 | |
| Q69RG7 | 558 | 4-coumarate--CoA ligase-l | no | no | 0.958 | 0.783 | 0.419 | 8e-87 | |
| Q84P26 | 550 | 4-coumarate--CoA ligase-l | no | no | 0.958 | 0.794 | 0.396 | 7e-85 |
| >sp|Q84P23|4CLL9_ARATH 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 433 bits (1114), Expect = e-120, Method: Compositional matrix adjust.
Identities = 226/466 (48%), Positives = 311/466 (66%), Gaps = 24/466 (5%)
Query: 7 QLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLR------ATLPWRDDDTVA 60
+L D SGF+ T +HSLRP + LPP D P+SA ++ SL AT +
Sbjct: 9 RLIDRSSGFDQRTGIYHSLRPSLSLPPIDQPLSAAEFALSLLLKSSPPATAGKNIEALTY 68
Query: 61 LINSVTGLRVSFSEFTRRTNSLA-SYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG 119
L+NS +G +++ E RR SLA S + L+ + AF+LS +S++IP+LY +L+S+G
Sbjct: 69 LVNSSSGDNLTYGELLRRVRSLAVSLRERFPSLASRNVAFILSPSSLDIPVLYLALMSIG 128
Query: 120 VIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKL--AKLKHRTILIDSPEFDSMTMS 177
V++SPANP+ +ESE+S Q+++S PVIAFATS V KL + L T+L+DS EF +S
Sbjct: 129 VVVSPANPIGSESEVSHQVEVSEPVIAFATSQTVKKLQSSSLPLGTVLMDSTEF----LS 184
Query: 178 WNSKHELD-----RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRV 232
W ++ + + +V QSD AAI++SSGTTGRVKGV+LTHRNL A+ A S + +
Sbjct: 185 WLNRSDSSSVNPFQVQVNQSDPAAILFSSGTTGRVKGVLLTHRNLIASTAVSHQRTLQ-- 242
Query: 233 SPA----VMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVT 288
P V LF++P FH++G RA +L ET V++ RF+L+ M KAVE+++VT V+
Sbjct: 243 DPVNYDRVGLFSLPLFHVFGFMMMIRAISLGETLVLLGRFELEAMFKAVEKYKVTGMPVS 302
Query: 289 PPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG 348
PP++VA+ K T YDL SL ++ CG APLGKD F KFP V +VQ YGLTES+
Sbjct: 303 PPLIVALVKSELTKKYDLRSLRSLGCGGAPLGKDIAERFKQKFPDVDIVQGYGLTESSGP 362
Query: 349 VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPE 408
T GP+E ++GS GR+S +EAKIVDP TG+SLPPGK GEL +RGP IMKGYVG +
Sbjct: 363 AASTFGPEEMVKYGSVGRISENMEAKIVDPSTGESLPPGKTGELWLRGPVIMKGYVGNEK 422
Query: 409 VTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPL 454
++ T+ +GW++TGDLCY D + FL+IVDRLK+LIKYK YQV P+
Sbjct: 423 ASAETVDKEGWLKTGDLCYFDSEDFLYIVDRLKELIKYKAYQVPPV 468
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Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) into OPDA-CoA. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: - |
| >sp|Q8RU95|4CLL6_ORYSJ 4-coumarate--CoA ligase-like 6 OS=Oryza sativa subsp. japonica GN=4CLL6 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 386 bits (991), Expect = e-106, Method: Compositional matrix adjust.
Identities = 209/466 (44%), Positives = 285/466 (61%), Gaps = 24/466 (5%)
Query: 11 TKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLP--WRDDDTVALINSVTGL 68
++SGF +AT+TFHSLR LPPE+ P++ Y SL ++ P AL+++ TG+
Sbjct: 40 SRSGFCAATRTFHSLRSVGPLPPEELPLTVAAYAFSLLSSAPPLVVAGRGPALVDAATGI 99
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
VS+ F R LA L L D A V+S + +++ +LYF+L+S+GV++SPANP
Sbjct: 100 AVSYPAFVARVRFLAGGLWCSLGLRPGDVALVVSPSCLDVAVLYFALMSIGVVVSPANPA 159
Query: 129 NTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAK 188
+T E + Q++LS P IAF V +L + R ++I S FD + + +
Sbjct: 160 STADEYAHQVRLSRPAIAFVAPEVAARLPRHVSR-VVIGSEVFDRLASASAAGGWAAPPA 218
Query: 189 VC--QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAV-------------ASSFASSPKRVS 233
V Q AA++YSSGTTGRVK V +THRNL A + A++ A K
Sbjct: 219 VAMKQPSTAALLYSSGTTGRVKAVAITHRNLIAQISAYNAIRETVAREAATDAGKGKPPP 278
Query: 234 ------PAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAV 287
AV LF +P FH+ G R + ETAVVM+RFDL +AVE +RVT +
Sbjct: 279 PSPSPPAAVTLFPLPLFHVMGFGLLTRTISSGETAVVMRRFDLAAAARAVERYRVTKLSA 338
Query: 288 TPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTA 347
PP+VVA++K DLSSL + G APLG++ FA+ FP V +VQ+YGLTEST
Sbjct: 339 APPVVVALTKSDEARRRDLSSLVAIVVGGAPLGREVSQRFATVFPSVQIVQSYGLTESTG 398
Query: 348 GVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEP 407
V GP+E +GS GRL+ ++AKIVD TG+ L PG+ GEL IRGP +MKGYVG+P
Sbjct: 399 PVATMAGPEESAAYGSVGRLAPRVQAKIVDTATGEVLGPGRRGELWIRGPVVMKGYVGDP 458
Query: 408 EVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
E T+AT+ PDGW++TGDLCY +EDG+L++VDRLK+LIKYKGYQV P
Sbjct: 459 EATAATITPDGWLKTGDLCYFNEDGYLYVVDRLKELIKYKGYQVPP 504
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Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q7F1X5|4CLL5_ORYSJ 4-coumarate--CoA ligase-like 5 OS=Oryza sativa subsp. japonica GN=4CLL5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 363 bits (933), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 204/460 (44%), Positives = 279/460 (60%), Gaps = 42/460 (9%)
Query: 9 FDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSL--RATLPWRDDDTVALINSVT 66
D++SGF +AT+ FHS R P DLPPE P++A Y SL +TLP R AL+++ T
Sbjct: 15 IDSRSGFCAATRIFHSTRAPGDLPPESLPMTAAAYAFSLLSSSTLPGRP----ALVDAAT 70
Query: 67 GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
G+ +S+ F SLA L L D A V++ + +E+P+L F+L+S+G ++SPAN
Sbjct: 71 GIAISYPSFLAAVRSLAGGLWCSLGLRPGDVALVVAPSRLEVPVLDFALMSIGAVVSPAN 130
Query: 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDR 186
PV+T E + Q+ LS PV+AFA V KL + R ++I S E+ + S +
Sbjct: 131 PVSTPEEYAHQVALSRPVVAFAAPEVAAKLPE-HVRCVVIGSDEYGRLAASDGRRAAAPA 189
Query: 187 AKVC-QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVS------------ 233
A QSD AA++YSSGTTGRVK V +THRNL A + S A + ++V+
Sbjct: 190 AVAVKQSDTAAVLYSSGTTGRVKAVAITHRNLIA-LMSLHADNREKVAREAAEAGEEPPP 248
Query: 234 PAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVV 293
PAV L +P FH++G R+ ++ ET+V+M+RFD L+A+E +RVT PP++V
Sbjct: 249 PAVTLLPIPLFHVFGFMMVLRSVSMGETSVLMERFDFIAALRAIERYRVTLLPAAPPVLV 308
Query: 294 AMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353
AM K DLSSL + G APLG++ FAS FP V LVQ YGLTES+ V TV
Sbjct: 309 AMVKYEEARRRDLSSLLVIGIGGAPLGREVAEQFASVFPNVELVQGYGLTESSGAVAATV 368
Query: 354 GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSAT 413
GP+E + +GS G+L + L+AKIVDP T GYVG+ E T+AT
Sbjct: 369 GPEESKAYGSVGKLGSHLQAKIVDPST---------------------GYVGDDEATAAT 407
Query: 414 LLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
+ +GW++TGDLCY +EDGFL+IVDRLK+LIKYKGYQV P
Sbjct: 408 VDSEGWLKTGDLCYFNEDGFLYIVDRLKELIKYKGYQVPP 447
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Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q84P21|4CLL5_ARATH 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 347 bits (890), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 194/457 (42%), Positives = 273/457 (59%), Gaps = 21/457 (4%)
Query: 10 DTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLR 69
+++SGF ++ TF+S R PI LPP + + ++SS +A I++ TG
Sbjct: 5 NSRSGFCNSNSTFYSKRTPIPLPP-NPSLDVTTFISS------QAHRGRIAFIDASTGQN 57
Query: 70 VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
++F+E R S+A L + + K +LS NSI P++ S++SLG II+ NP+N
Sbjct: 58 LTFTELWRAVESVADCLSEIG-IRKGHVVLLLSPNSILFPVVCLSVMSLGAIITTTNPLN 116
Query: 130 TESEISRQIQLSNPVIAFATSSVVHKL--AKLKHRTILIDSPEFDSM--------TMSWN 179
T +EI++QI+ SNPV+AF TS ++ K+ A K +L+D DS+ M
Sbjct: 117 TSNEIAKQIKDSNPVLAFTTSQLLPKISAAAKKLPIVLMDEERVDSVGDVRRLVEMMKKE 176
Query: 180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLF 239
+ +V Q D A ++YSSGTTG KGV+ +HRNL A V + +
Sbjct: 177 PSGNRVKERVDQDDTATLLYSSGTTGMSKGVISSHRNLIAMVQTIVNRFGSDDGEQRFIC 236
Query: 240 TMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKG 298
T+P FHIYGL F A T +V+ +F++ M+ A+ +++ T + PPI+VAM G
Sbjct: 237 TVPMFHIYGLAAFATGLLAYGSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVAMVNG 296
Query: 299 GST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPD 356
YDLSS+ TV CG APL K+ FA K+P V ++Q YGLTEST T +
Sbjct: 297 ADQIKAKYDLSSMHTVLCGGAPLSKEVTEGFAEKYPTVKILQGYGLTESTGIGASTDTVE 356
Query: 357 ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP 416
E RR+G+ G+LSA +E +IVDP TG L P + GEL ++GP+IMKGY E TS+TL
Sbjct: 357 ESRRYGTAGKLSASMEGRIVDPVTGQILGPKQTGELWLKGPSIMKGYFSNEEATSSTLDS 416
Query: 417 DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
+GW+RTGDLCYIDEDGF+F+VDRLK+LIKYKGYQV P
Sbjct: 417 EGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVAP 453
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Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) and 3-oxo-2-(2'-pentenyl)-cyclopentane-1-octanoic acid (OPC-8:0) into OPDA-CoA and OPC-8:0-CoA, respectively. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|P0C5B6|4CLL4_ARATH 4-coumarate--CoA ligase-like 4 OS=Arabidopsis thaliana GN=4CLL4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 336 bits (862), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 193/461 (41%), Positives = 271/461 (58%), Gaps = 25/461 (5%)
Query: 8 LFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTG 67
+ D +SGF + TF+S R P+ LPP + V++ ++ P R A I++ TG
Sbjct: 9 IVDPRSGFCKSNSTFYSKRQPLSLPP-----NLSRDVTTFISSQPHRGK--TAFIDAATG 61
Query: 68 LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANP 127
++FS+ R + +A L + + + D +LS NSI IP++ S++SLG + + AN
Sbjct: 62 QCLTFSDLWRAVDRVADCLYHEVGIRRGDVVLILSPNSIFIPVVCLSVMSLGAVFTTANT 121
Query: 128 VNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMT--------MSWN 179
+NT EIS+QI SNP + F T + KL + +L D + +T +S
Sbjct: 122 LNTSGEISKQIADSNPTLVFTTRQLAPKLP-VAISVVLTDDEVYQELTSAIRVVGILSEM 180
Query: 180 SKHELD----RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA 235
K E R +V Q D A ++YSSGTTG KGV+ +HRNLTA VA + + KR
Sbjct: 181 VKKEPSGQRVRDRVNQDDTAMMLYSSGTTGPSKGVISSHRNLTAHVARFISDNLKR--DD 238
Query: 236 VMLFTMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVA 294
+ + T+P FH YGL F AL T V+++RF L M+ AVE+ R T A+ PP++VA
Sbjct: 239 IFICTVPMFHTYGLLTFAMGTVALGSTVVILRRFQLHDMMDAVEKHRATALALAPPVLVA 298
Query: 295 MSKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352
M YDLSSL+TV CG APL K+ F K+P V ++Q Y LTES G T
Sbjct: 299 MINDADLIKAKYDLSSLKTVRCGGAPLSKEVTEGFLEKYPTVDILQGYALTESNGGGAFT 358
Query: 353 VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSA 412
+E RR+G+ G L++ +EA+IVDP TG + + GEL ++GP+I KGY E T+
Sbjct: 359 NSAEESRRYGTAGTLTSDVEARIVDPNTGRFMGINQTGELWLKGPSISKGYFKNQEATNE 418
Query: 413 TLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
T+ +GW++TGDLCYIDEDGFLF+VDRLK+LIKYKGYQV P
Sbjct: 419 TINLEGWLKTGDLCYIDEDGFLFVVDRLKELIKYKGYQVPP 459
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Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q3E6Y4|4CLL3_ARATH 4-coumarate--CoA ligase-like 3 OS=Arabidopsis thaliana GN=4CLL3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 334 bits (857), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 190/463 (41%), Positives = 275/463 (59%), Gaps = 27/463 (5%)
Query: 8 LFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTG 67
+ D +SGF + TF+S R P+ LPP ++D V++ ++ P R T A I++ TG
Sbjct: 9 IVDPRSGFCKSNSTFYSKRNPLCLPPN----PSLD-VTTFISSQPQRG--TTAFIDASTG 61
Query: 68 LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANP 127
R++FS+ R + +A L + + + D +LS NSI IP++ S++SLG +++ AN
Sbjct: 62 HRLTFSDLWRVVDRVADCLYHEVGIRRGDVVLILSPNSIYIPVVCLSVMSLGAVVTTANT 121
Query: 128 VNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFD--------------S 173
+NT EIS+QI SNP + F TS + KLA +L D + S
Sbjct: 122 LNTSGEISKQIAQSNPTLVFTTSQLAPKLAA-AISVVLTDEEDEKRVELTSGVRVVGILS 180
Query: 174 MTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVS 233
M + + R +V Q D A ++YSSGTTG KGV+ +HRNLTA VA KR
Sbjct: 181 EMMKKETSGQRVRDRVNQDDTAMMLYSSGTTGTSKGVISSHRNLTAYVAKYIDDKWKR-- 238
Query: 234 PAVMLFTMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIV 292
+ + T+P FH +GL F + A T V+++RF L M++AVE+++ T ++ PP++
Sbjct: 239 DEIFVCTVPMFHSFGLLAFAMGSVASGSTVVILRRFGLDDMMQAVEKYKATILSLAPPVL 298
Query: 293 VAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVF 350
VAM G YDL+SL V CG APL K+ + +F K+P V + Q Y LTES
Sbjct: 299 VAMINGADQLKAKYDLTSLRKVRCGGAPLSKEVMDSFLEKYPTVNIFQGYALTESHGSGA 358
Query: 351 RTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVT 410
T +E ++G+ G LS+G+EA+IVDP+TG + + GEL ++GP+I KGY G E T
Sbjct: 359 STESVEESLKYGAVGLLSSGIEARIVDPDTGRVMGVNQPGELWLKGPSISKGYFGNEEAT 418
Query: 411 SATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
+ T+ +GW++ GDLCYIDEDGFLF+VDRLK+LIKYKGYQV P
Sbjct: 419 NETINLEGWLKLGDLCYIDEDGFLFVVDRLKELIKYKGYQVPP 461
|
Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q84P25|4CLL2_ARATH 4-coumarate--CoA ligase-like 2 OS=Arabidopsis thaliana GN=4CLL2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 324 bits (830), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 196/469 (41%), Positives = 271/469 (57%), Gaps = 41/469 (8%)
Query: 10 DTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLR 69
D KSGF +T F+S R P+ LPP +D V+S A+ P R +++VTG R
Sbjct: 22 DRKSGFCESTSIFYSKREPMALPPNQF----LD-VTSFIASQPHRGK--TVFVDAVTGRR 74
Query: 70 VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
+SF E +A L + + K + +LS NSI PI+ S++SLG II+ ANP+N
Sbjct: 75 LSFPELWLGVERVAGCLYALG-VRKGNVVIILSPNSILFPIVSLSVMSLGAIITTANPIN 133
Query: 130 TESEISRQIQLSNPVIAFATSSVVHKLAKLKHRT---ILIDSPEFDSMTMSWNSKHELD- 185
T EIS+QI S PV+AF T +V KLA + +L+D ++ + S+ + +L
Sbjct: 134 TSDEISKQIGDSRPVLAFTTCKLVSKLAAASNFNLPVVLMD--DYHVPSQSYGDRVKLVG 191
Query: 186 ---------------RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS---SFAS 227
+ +V Q D AA++YSSGTTG KGVML+HRNL A V + F
Sbjct: 192 RLETMIETEPSESRVKQRVNQDDTAALLYSSGTTGTSKGVMLSHRNLIALVQAYRARFGL 251
Query: 228 SPKRVSPAVMLFTMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAA 286
+ + T+P HI+G F AL T VV+ +FD+ +L AVE R ++ +
Sbjct: 252 EQRTIC------TIPMCHIFGFGGFATGLIALGWTIVVLPKFDMAKLLSAVETHRSSYLS 305
Query: 287 VTPPIVVAMSKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE 344
+ PPIVVAM G + YDLSSL TV G APL ++ F +PKV ++Q YGLTE
Sbjct: 306 LVPPIVVAMVNGANEINSKYDLSSLHTVVAGGAPLSREVTEKFVENYPKVKILQGYGLTE 365
Query: 345 STAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYV 404
STA +E +R+G++G L+ +E KIVDP+TG L + GEL IR PT+MKGY
Sbjct: 366 STAIAASMFNKEETKRYGASGLLAPNVEGKIVDPDTGRVLGVNQTGELWIRSPTVMKGYF 425
Query: 405 GEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
E T++T+ +GW++TGDLCYID DGF+F+VDRLK+LIK GYQV P
Sbjct: 426 KNKEATASTIDSEGWLKTGDLCYIDGDGFVFVVDRLKELIKCNGYQVAP 474
|
Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q10S72|4CLL4_ORYSJ 4-coumarate--CoA ligase-like 4 OS=Oryza sativa subsp. japonica GN=4CLL4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 322 bits (825), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 193/468 (41%), Positives = 276/468 (58%), Gaps = 27/468 (5%)
Query: 4 KTPQL-FDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALI 62
++P++ D +SG+ +AT+TF S R + LP D + V +++S R + VAL+
Sbjct: 3 RSPEMEVDARSGYCAATRTFRSRRADVPLP-ADPEVDVVSFLASRRHS------GVVALV 55
Query: 63 NSVTGLRVSFSEFTRRTNSLASYLQ-NVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVI 121
++ TG R++F+E R AS L + L K A +LS NS+ P+ + +SLG +
Sbjct: 56 DAATGRRITFTELWRAVAGAASALAAHPVSLRKGHVALILSPNSVHFPVAALAAMSLGAV 115
Query: 122 ISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKH-RTILIDSPEF--DS----- 173
++ ANP+NT +EI++Q+ + PV+AF T ++ KL + R +L++S DS
Sbjct: 116 LTTANPLNTPAEIAKQVADARPVLAFTTRELLPKLPRAHDLRVVLLESARLPGDSSDPRI 175
Query: 174 -MTMSWNSKHELDRAK----VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS 228
T+ S D A+ V Q D A ++YSSGTTG KGV+ THR+L + V
Sbjct: 176 VATIEEISATTPDPARRKDRVTQDDPATLLYSSGTTGPSKGVVATHRSLISMVQIIMTRF 235
Query: 229 PKRVSPAVMLF--TMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHA 285
S F T+P FH+YGL F T VV+ +++L ML+++ + VT+
Sbjct: 236 RLEGSDKTETFLCTVPMFHVYGLVAFATGLLGCGATVVVLSKYELPEMLRSINAYGVTYL 295
Query: 286 AVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES 345
+ PPI+VAM L + V G APLGK+ I F K+P+V ++Q YGLTES
Sbjct: 296 PLVPPILVAMV--AHPKPLPLGQMRKVLSGGAPLGKELIEGFREKYPQVEILQGYGLTES 353
Query: 346 TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVG 405
TA T +E RR+G+ G LS EAKIVDP++G++LP + GEL IRGP +MKGY
Sbjct: 354 TAIGASTDSAEESRRYGTAGLLSPNTEAKIVDPDSGEALPVNRTGELWIRGPYVMKGYFK 413
Query: 406 EPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
E T +TL PDGW++TGDLCYIDEDG+LF+VDRLK+LIKYKGYQV P
Sbjct: 414 NAEATQSTLTPDGWLKTGDLCYIDEDGYLFVVDRLKELIKYKGYQVPP 461
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q69RG7|4CLL7_ORYSJ 4-coumarate--CoA ligase-like 7 OS=Oryza sativa subsp. japonica GN=4CLL7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 321 bits (822), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 191/455 (41%), Positives = 263/455 (57%), Gaps = 18/455 (3%)
Query: 11 TKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYV-----SSLRATLPWRDDDTVALINSV 65
T++G+ +ATK+F SLRPP+ LPP D P+S ++ S ++ AL+++
Sbjct: 15 TRTGYCAATKSFRSLRPPVPLPPPDVPLSFPEFAFSLLPRSSSSSSSSLLPANPALVDAA 74
Query: 66 TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPA 125
TG VSF F R +LA L++ L D AFVL+ +++P+LYF+LLS+G ++SPA
Sbjct: 75 TGEAVSFQAFLSRVRALAGALRSRVGLRGGDVAFVLAPAGLDVPVLYFALLSIGAVVSPA 134
Query: 126 NPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSW---NSKH 182
NP T +E+SR + LS +AFA SS KL +L+DSP F S+ M +
Sbjct: 135 NPALTPAEVSRLVSLSGASVAFAVSSTATKLPAGLTTVVLLDSPHFRSLLMDCGQAQGQE 194
Query: 183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMP 242
L V QS+ AAI YSSGTTGRVK L HR+ A VA F + + L P
Sbjct: 195 PLPVVVVRQSETAAIQYSSGTTGRVKAAALPHRSFIAMVAG-FHALRAKAREVRTLLGAP 253
Query: 243 YFHIYGLFFCFRAAALMETAVVM----QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKG 298
FH G F + AL T VV+ R ++ +++A E + V +PP+V+ M+K
Sbjct: 254 MFHSMGFLFVLQGVALGATTVVVTDAVARAGIRGLVEAAERWAVMDMTASPPVVLGMTK- 312
Query: 299 GSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDEC 358
L +LE + CG APL I F +FP V L YG TE+ G+ R + +EC
Sbjct: 313 ---QRCRLPALERITCGGAPLPAPAIERFRRRFPHVDLCMGYGSTEA-GGISRMISQEEC 368
Query: 359 RRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG 418
GS GR++ +E KIVD TG LP G++GEL +RGP +M GYVG+ E + T +G
Sbjct: 369 NHIGSAGRVTENVEVKIVDHVTGKPLPAGQQGELWVRGPAVMTGYVGDNEANATTFNSEG 428
Query: 419 WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
W++TGDLCYID+DGFLF+VDRLK+LIKYK YQV P
Sbjct: 429 WLKTGDLCYIDQDGFLFVVDRLKELIKYKAYQVPP 463
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q84P26|4CLL8_ARATH 4-coumarate--CoA ligase-like 8 OS=Arabidopsis thaliana GN=4CLL8 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 314 bits (805), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 186/469 (39%), Positives = 268/469 (57%), Gaps = 32/469 (6%)
Query: 3 KKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALI 62
+++ L D ++GF ++ TF+S R P+ LP +++ + ++SS +R A I
Sbjct: 5 QRSSSLIDPRNGFCTSNSTFYSKRKPLALPSKES-LDITTFISSQT----YRGK--TAFI 57
Query: 63 NSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVII 122
++ T R+SFS+ + +A L + + + D VLS N+I IPI+ S++SLG ++
Sbjct: 58 DAATDHRISFSDLWMAVDRVADCLLHDVGIRRGDVVLVLSPNTISIPIVCLSVMSLGAVL 117
Query: 123 SPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSM-------- 174
+ ANP+NT SEI RQI SNP +AF T + K+A +I+++ E D++
Sbjct: 118 TTANPLNTASEILRQIADSNPKLAFTTPELAPKIAS-SGISIVLERVE-DTLRVPRGLKV 175
Query: 175 ------TMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS 228
M + R +V + D A ++YSSGTTGR KGV +H NL A VA + +
Sbjct: 176 VGNLTEMMKKEPSGQAVRNQVHKDDTAMLLYSSGTTGRSKGVNSSHGNLIAHVAR-YIAE 234
Query: 229 PKRVSPAVMLFTMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAV 287
P + T+P FH +GL F AL T V++ RFDL M+ AVE++R T +
Sbjct: 235 PFEQPQQTFICTVPLFHTFGLLNFVLATLALGTTVVILPRFDLGEMMAAVEKYRATTLIL 294
Query: 288 TPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES 345
PP++V M YD+S L TV CG APL K+ F K+P V + Q Y LTES
Sbjct: 295 VPPVLVTMINKADQIMKKYDVSFLRTVRCGGAPLSKEVTQGFMKKYPTVDVYQGYALTES 354
Query: 346 TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYV- 404
+E RR+G+ G LS G+EA+IVDP TG + + GEL ++GP+I KGY
Sbjct: 355 NGAGASIESVEESRRYGAVGLLSCGVEARIVDPNTGQVMGLNQTGELWLKGPSIAKGYFR 414
Query: 405 GEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
E E+ ++ +GW++TGDLCYID DGFLFIVDRLK+LIKYKGYQV P
Sbjct: 415 NEEEIITS----EGWLKTGDLCYIDNDGFLFIVDRLKELIKYKGYQVPP 459
|
Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 456 | ||||||
| 224133070 | 548 | 4-coumarate-coa ligase [Populus trichoca | 0.989 | 0.822 | 0.655 | 1e-173 | |
| 444475573 | 540 | 4-coumarate CoA ligase [Lonicera japonic | 0.973 | 0.822 | 0.640 | 1e-159 | |
| 225452165 | 543 | PREDICTED: 4-coumarate--CoA ligase-like | 0.982 | 0.825 | 0.615 | 1e-158 | |
| 255536983 | 540 | AMP dependent CoA ligase, putative [Rici | 0.975 | 0.824 | 0.611 | 1e-153 | |
| 225452163 | 541 | PREDICTED: 4-coumarate--CoA ligase-like | 0.960 | 0.809 | 0.574 | 1e-146 | |
| 296090250 | 513 | unnamed protein product [Vitis vinifera] | 0.916 | 0.814 | 0.580 | 1e-141 | |
| 255547814 | 548 | AMP dependent CoA ligase, putative [Rici | 0.982 | 0.817 | 0.558 | 1e-136 | |
| 359491536 | 851 | PREDICTED: 4-coumarate--CoA ligase-like | 0.989 | 0.529 | 0.537 | 1e-134 | |
| 356571403 | 541 | PREDICTED: 4-coumarate--CoA ligase-like | 0.967 | 0.815 | 0.558 | 1e-133 | |
| 357440909 | 539 | 4-coumarate-coa ligase [Medicago truncat | 0.967 | 0.818 | 0.579 | 1e-133 |
| >gi|224133070|ref|XP_002327954.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|224133074|ref|XP_002327955.1| acyl:coa ligase [Populus trichocarpa] gi|222837363|gb|EEE75742.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|222837364|gb|EEE75743.1| acyl:coa ligase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust.
Identities = 300/458 (65%), Positives = 359/458 (78%), Gaps = 7/458 (1%)
Query: 1 MEKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATL-PWRDDDTV 59
M+++ + KSGFNS+ KTFHSLRPPI LPPE+ P SA DY SL A PW D++
Sbjct: 1 MDQQANSPINPKSGFNSSAKTFHSLRPPIHLPPEETPFSAADYALSLHANHSPW--PDSL 58
Query: 60 ALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG 119
A+INS T ++S+S+F R SL YLQNVT+L KNDTAF+L NSI++PILYFSLLSLG
Sbjct: 59 AIINSSTSQKLSYSDFIERIKSLTLYLQNVTQLRKNDTAFILCPNSIQVPILYFSLLSLG 118
Query: 120 VIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSM-TMS- 177
V+ISPANP++TESEIS QI LSNPVIAFA S HKL KLKH TILIDSPEFDS+ TMS
Sbjct: 119 VVISPANPISTESEISHQISLSNPVIAFAISKTCHKLPKLKHGTILIDSPEFDSIITMSP 178
Query: 178 --WNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA 235
++ +L++ V QSD+AAIM+SSGTTG+VKGVMLTHRNL A +A + +R SP
Sbjct: 179 ATTTARQDLEKVTVNQSDLAAIMFSSGTTGKVKGVMLTHRNLMAVIAGYYPFKQERKSPT 238
Query: 236 VMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAM 295
VML+T+PYFH++G F+ F++ AL ET VVM+RFDLK ML+AVE+FRVTH AV PP+VVAM
Sbjct: 239 VMLYTVPYFHVFGFFYSFKSVALSETVVVMERFDLKKMLRAVEKFRVTHLAVAPPVVVAM 298
Query: 296 SKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGP 355
+K TDGYDL SLETV CG APLGKD + FA +FP V L Q YGLTEST + R+ P
Sbjct: 299 AKSDLTDGYDLRSLETVGCGGAPLGKDVMKVFADRFPTVDLWQGYGLTESTGVLSRSNSP 358
Query: 356 DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLL 415
+E R WGS GRL+A EAKIVD +TGD+LPPGK+GEL +RG TIMKGYVG+PE TS TL
Sbjct: 359 EESRHWGSVGRLTACCEAKIVDADTGDALPPGKQGELWVRGSTIMKGYVGDPEATSTTLD 418
Query: 416 PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
PDGW+RTGDLCYIDE+GFLF+VDRLK+LIKYKGYQV P
Sbjct: 419 PDGWLRTGDLCYIDEEGFLFVVDRLKELIKYKGYQVAP 456
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|444475573|gb|AGE10595.1| 4-coumarate CoA ligase [Lonicera japonica] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 290/453 (64%), Positives = 348/453 (76%), Gaps = 9/453 (1%)
Query: 1 MEKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVA 60
MEK FD SGF+S TKTFHSL PP+ LPPE A IS+ Y SL+ T PW D+
Sbjct: 1 MEK-----FDPNSGFSSQTKTFHSLTPPLPLPPETALISSATYSLSLQLTSPW--PDSTX 53
Query: 61 LINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV 120
LI+S TG R+S+S+FT +TN+L+S LQ+ LSK D AF+LS NS++IP+LYFSLLSLGV
Sbjct: 54 LIDSATGQRLSYSQFTTQTNNLSSSLQSHLGLSKGDVAFILSLNSLQIPLLYFSLLSLGV 113
Query: 121 IISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNS 180
IISP+NP +TESEISRQI+LS PVIAFATS+ HK+ L+H T+LIDSPEF SMT S S
Sbjct: 114 IISPSNPSSTESEISRQIKLSKPVIAFATSATSHKIPALRHGTVLIDSPEFVSMTTS--S 171
Query: 181 KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFT 240
EL V Q D+AAIMYSSGTTG+VKGVMLTHRNLTA VA+ A P+R SPAV+L+T
Sbjct: 172 GRELSCVGVSQCDIAAIMYSSGTTGQVKGVMLTHRNLTAIVANYHALRPERKSPAVVLYT 231
Query: 241 MPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS 300
MPYFH+ GLF C ++ AL ET VVM+RF+LK ML+AVEE RVT+ A+ PP+VVAM+K
Sbjct: 232 MPYFHVIGLFCCMKSVALSETVVVMERFNLKRMLRAVEELRVTNVAMAPPVVVAMTKAEV 291
Query: 301 TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRR 360
T YDL SLE CG APLGKD I AF +KFP V+L Q YG+TE+ FR V P+E R
Sbjct: 292 TKEYDLKSLEGFGCGGAPLGKDVIAAFTAKFPGVLLTQGYGMTETAGPAFRAVTPEESFR 351
Query: 361 WGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWM 420
WGS GRL A EA+IVDP+TG +LPPGK+GEL ++GP MKGYVG+P+ TS TL+ DGW+
Sbjct: 352 WGSVGRLQANCEARIVDPDTGTALPPGKQGELWLKGPITMKGYVGDPKATSETLVLDGWL 411
Query: 421 RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
RTGDLCY DE+GFLF+VDRLK+LIKYKGYQV P
Sbjct: 412 RTGDLCYFDEEGFLFVVDRLKELIKYKGYQVPP 444
|
Source: Lonicera japonica Species: Lonicera japonica Genus: Lonicera Family: Caprifoliaceae Order: Dipsacales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225452165|ref|XP_002270592.1| PREDICTED: 4-coumarate--CoA ligase-like 9 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 279/453 (61%), Positives = 342/453 (75%), Gaps = 5/453 (1%)
Query: 1 MEKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVA 60
MEK + D KSGF SATKTFHSL+P ++LPP+ +SA Y SLR+ L D+ A
Sbjct: 1 MEKSNLHI-DPKSGFCSATKTFHSLKPTVELPPQHLLLSADAYAFSLRSGLGC--PDSAA 57
Query: 61 LINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV 120
LINS TG R+ +SEF R+ +LA+YLQ V LSK DTAFVLS+N I++PILYFSLLSLGV
Sbjct: 58 LINSTTGHRLLYSEFALRSKTLAAYLQTVIGLSKGDTAFVLSSNLIQVPILYFSLLSLGV 117
Query: 121 IISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNS 180
IISPANP+NT+SEISR I+L PVIAF+ S+ HKL L HRT++IDS EFDSM
Sbjct: 118 IISPANPINTQSEISRLIELCKPVIAFSISTAAHKLPSLHHRTVIIDSFEFDSMMT--GP 175
Query: 181 KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFT 240
EL +V QSD+AAIMYSSGTTGRVKGVMLTHRNL A AS R SP V+L+T
Sbjct: 176 IRELVPVEVSQSDLAAIMYSSGTTGRVKGVMLTHRNLIAMTASIHEGQSVRSSPDVLLYT 235
Query: 241 MPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS 300
+P+FH+ G F+C ++ AL ET VVM+RFDL+ ML VE+F+VTH AV PP++VAM+KG +
Sbjct: 236 VPFFHMIGFFYCVKSVALNETVVVMERFDLRRMLTLVEKFKVTHMAVVPPVLVAMAKGDA 295
Query: 301 TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRR 360
TD DL+SLE+V+CG APLGKD AF +KFP V + Q YGLTES+ V R + P+ECR
Sbjct: 296 TDNNDLTSLESVSCGGAPLGKDLCQAFTAKFPNVAIRQGYGLTESSGAVSRLLDPEECRH 355
Query: 361 WGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWM 420
WGS GRL+ EAKIVDP+TG +LPP K+GEL +RGP +MKGYVG+ + T TL+ DGW+
Sbjct: 356 WGSVGRLTGIFEAKIVDPDTGLALPPCKQGELWVRGPAVMKGYVGDRKATRETLVSDGWL 415
Query: 421 RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
RTGDLCYID +GFL++VDRLK+LIKYKGYQV P
Sbjct: 416 RTGDLCYIDGEGFLYVVDRLKELIKYKGYQVAP 448
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255536983|ref|XP_002509558.1| AMP dependent CoA ligase, putative [Ricinus communis] gi|223549457|gb|EEF50945.1| AMP dependent CoA ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 277/453 (61%), Positives = 329/453 (72%), Gaps = 8/453 (1%)
Query: 1 MEKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVA 60
M++ T D KSGFN TK FHSLRP +DLP EDA IS DY S D ++A
Sbjct: 1 MDQTTSASVDPKSGFNRITKIFHSLRPTVDLPSEDASISVADYALSSSP-----DFGSLA 55
Query: 61 LINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV 120
LI+S +G +S+S+F T SL YL NV +LSKND AFVL S +IPILYFSLLSLGV
Sbjct: 56 LIDSSSGHGISYSDFYLFTKSLTCYLHNVIKLSKNDVAFVLCPKSTKIPILYFSLLSLGV 115
Query: 121 IISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNS 180
IISP+NP+NTE EISRQI LS PVIAFATSS HK+ KL H+TIL+DSPEF+S+ +
Sbjct: 116 IISPSNPLNTELEISRQISLSKPVIAFATSSTAHKIPKLNHKTILLDSPEFNSILTTSCP 175
Query: 181 KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFT 240
HELD+ V QSD+A I YSSGTTG+VK VMLTHRNLTA V A ++ AV L
Sbjct: 176 THELDKVTVRQSDLAGIFYSSGTTGKVKAVMLTHRNLTAVVGGYLALKQEK---AVTLNP 232
Query: 241 MPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS 300
+PYFH+YG F+ ++ AL E VVM++F+LK ML+AV+EFRVT AV PPIVV M K G
Sbjct: 233 VPYFHVYGFFYSLKSVALREVVVVMEKFELKKMLRAVQEFRVTQLAVAPPIVVQMVKDGL 292
Query: 301 TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRR 360
TD YDL SL+ V CGAAPLG+D I AF ++FP V L Q YGLTES+ R GP E
Sbjct: 293 TDCYDLRSLQAVGCGAAPLGRDVIAAFKARFPTVELWQGYGLTESSGVCSRATGPGESHC 352
Query: 361 WGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWM 420
WGS GRL+A + KIV+P+T +L PGK+GEL I+GPTIMKGYVG+PE TSA L DGW+
Sbjct: 353 WGSVGRLTAYCKVKIVNPDTMVALLPGKQGELWIKGPTIMKGYVGDPEATSAALTSDGWL 412
Query: 421 RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
RTGDLCYIDE+GF+FIVDRLK+LIKYKGYQV P
Sbjct: 413 RTGDLCYIDEEGFVFIVDRLKELIKYKGYQVAP 445
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225452163|ref|XP_002270555.1| PREDICTED: 4-coumarate--CoA ligase-like 9-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 255/444 (57%), Positives = 327/444 (73%), Gaps = 6/444 (1%)
Query: 10 DTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLR 69
D +SGF + T+TFHSLRP + LPPE+ +SA Y SLRA P DD+ +INS TG R
Sbjct: 9 DPRSGFCAETRTFHSLRPTVQLPPENVLLSADAYTYSLRAPSP--GDDSPVIINSTTGQR 66
Query: 70 VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
+S+SEF RR+ +LA+YLQ++ L+K D A++LS N I++P+LYF+LLSLGV++SPANP+N
Sbjct: 67 LSYSEFVRRSKTLAAYLQSIVGLNKGDAAYILSNNLIQVPVLYFALLSLGVVVSPANPIN 126
Query: 130 TESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKV 189
T++E++RQ QL PVIAF S+ VHK+ KL++ TI+IDS EF+ M S + E+ KV
Sbjct: 127 TKAEVARQTQLCRPVIAFTISTAVHKIPKLRYGTIVIDSFEFELMMTS--PRREMVDVKV 184
Query: 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL 249
QSD+A IMYSSGTTG VKGVM+THRNL A S K SP V+L +PYFH+YG
Sbjct: 185 SQSDLAGIMYSSGTTGNVKGVMVTHRNLIAMTGSYMQR--KANSPVVLLQIVPYFHVYGF 242
Query: 250 FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSL 309
+ F+ A+ T V+M+++DL+ + AVE+++VT AV PP+VVAMSK T+G DLSSL
Sbjct: 243 HYVFKCMAMNVTVVIMEKYDLEKTIDAVEKYKVTDLAVAPPVVVAMSKKAVTEGRDLSSL 302
Query: 310 ETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSA 369
ETVA G APLGK+ I AF +KFP V+ Q YG+TE + + +EC RWGS+G+
Sbjct: 303 ETVASGGAPLGKELIEAFTAKFPGTVISQGYGMTEVIGRISEALDREECSRWGSSGKFPG 362
Query: 370 GLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYID 429
EAKIVD ETG SLPP K GEL ++GP+IMKGYV +P+ TS TL PDGW+RTGDLCYID
Sbjct: 363 IWEAKIVDQETGASLPPLKRGELWVKGPSIMKGYVNDPKATSETLTPDGWLRTGDLCYID 422
Query: 430 EDGFLFIVDRLKDLIKYKGYQVLP 453
EDGFLFIVDRLK+LIKYKGYQV P
Sbjct: 423 EDGFLFIVDRLKELIKYKGYQVAP 446
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296090250|emb|CBI40069.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 263/453 (58%), Positives = 318/453 (70%), Gaps = 35/453 (7%)
Query: 1 MEKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVA 60
MEK + D KSGF SATKTFHSL+P ++LPP+ +SA Y SLR+ L D+ A
Sbjct: 1 MEKSNLHI-DPKSGFCSATKTFHSLKPTVELPPQHLLLSADAYAFSLRSGLGC--PDSAA 57
Query: 61 LINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV 120
LINS TG R+ +SEF R+ +LA+YLQ V LSK DTAFVLS+N I++PILYFSLLSLGV
Sbjct: 58 LINSTTGHRLLYSEFALRSKTLAAYLQTVIGLSKGDTAFVLSSNLIQVPILYFSLLSLGV 117
Query: 121 IISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNS 180
IISPANP+NT+SEISR I+L PVIAF+ S+ HKL L HRT++IDS EFDSM
Sbjct: 118 IISPANPINTQSEISRLIELCKPVIAFSISTAAHKLPSLHHRTVIIDSFEFDSMMT--GP 175
Query: 181 KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFT 240
EL +V QSD+AAIMYSSGTTGRVKGVMLTHRNL A AS R SP V+
Sbjct: 176 IRELVPVEVSQSDLAAIMYSSGTTGRVKGVMLTHRNLIAMTASIHEGQSVRSSPDVL--- 232
Query: 241 MPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS 300
FDL+ ML VE+F+VTH AV PP++VAM+KG +
Sbjct: 233 ---------------------------FDLRRMLTLVEKFKVTHMAVVPPVLVAMAKGDA 265
Query: 301 TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRR 360
TD DL+SLE+V+CG APLGKD AF +KFP V + Q YGLTES+ V R + P+ECR
Sbjct: 266 TDNNDLTSLESVSCGGAPLGKDLCQAFTAKFPNVAIRQGYGLTESSGAVSRLLDPEECRH 325
Query: 361 WGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWM 420
WGS GRL+ EAKIVDP+TG +LPP K+GEL +RGP +MKGYVG+ + T TL+ DGW+
Sbjct: 326 WGSVGRLTGIFEAKIVDPDTGLALPPCKQGELWVRGPAVMKGYVGDRKATRETLVSDGWL 385
Query: 421 RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
RTGDLCYID +GFL++VDRLK+LIKYKGYQV P
Sbjct: 386 RTGDLCYIDGEGFLYVVDRLKELIKYKGYQVAP 418
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255547814|ref|XP_002514964.1| AMP dependent CoA ligase, putative [Ricinus communis] gi|223546015|gb|EEF47518.1| AMP dependent CoA ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 254/455 (55%), Positives = 316/455 (69%), Gaps = 7/455 (1%)
Query: 1 MEKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVA 60
+EK D KSGF S TKTF+SLR LPP +PIS D++ SL + P T A
Sbjct: 4 IEKNPSSSIDPKSGFCSKTKTFYSLRSLAQLPPLASPISVTDFIFSLLQSFP-PSAATPA 62
Query: 61 LINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV 120
LI++VTG R+S+ EF T SL+SYL V L K DTAF+LS NS+ IPI+ FSLLSLGV
Sbjct: 63 LIDAVTGHRISYPEFIILTKSLSSYLHIVLGLRKGDTAFILSPNSVHIPIICFSLLSLGV 122
Query: 121 IISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNS 180
I+SP NP ++ESEI QI LS PV+AF T HK+ L TI+IDS F+S+ +
Sbjct: 123 IVSPGNPASSESEIQHQIHLSKPVVAFVTGHTAHKITNLN--TIVIDSHWFESIRS--HR 178
Query: 181 KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFT 240
+ E + ++ QSD AAI+YSSGTTGRVKGV+LTHRN T A+ A R +P V
Sbjct: 179 EPEPVKPRIYQSDPAAILYSSGTTGRVKGVILTHRNFTYVAAAGHAVRAPRQTPPVSFCV 238
Query: 241 MPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKG-- 298
+PYFH+YGL + R + ET V M RFD+KMMLKA+++FR+TH A+ PP+VVAM+KG
Sbjct: 239 VPYFHVYGLSYFIRTLTVGETLVSMGRFDMKMMLKAIQDFRITHMALAPPVVVAMAKGNN 298
Query: 299 GSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDEC 358
G DGYDLSSLE V CG APL + + F KFP V+L QAYGLTESTA VF T+G +E
Sbjct: 299 GMVDGYDLSSLEVVGCGGAPLRESVVQQFRKKFPNVILGQAYGLTESTARVFGTLGSEEG 358
Query: 359 RRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG 418
+ G+TG+L + EAKIV PETG LPPG GE+ +RGP+IMKGYV + T+ATL +G
Sbjct: 359 QVMGATGKLMSNCEAKIVHPETGTHLPPGSPGEIWVRGPSIMKGYVNDEAATAATLDSEG 418
Query: 419 WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
W+RTGDLCYID +GFLF VDR+K+LIKYKGYQV P
Sbjct: 419 WLRTGDLCYIDNEGFLFFVDRIKELIKYKGYQVAP 453
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359491536|ref|XP_002279522.2| PREDICTED: 4-coumarate--CoA ligase-like 9-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 245/456 (53%), Positives = 319/456 (69%), Gaps = 5/456 (1%)
Query: 2 EKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTV-A 60
E D KSGF+ TKT+HSLRPP+ PP+ P+S +YV SL + P +T
Sbjct: 3 EMNGNHWIDPKSGFSPTTKTYHSLRPPVPFPPKHRPLSLAEYVISLLRSAPDSPLETTNV 62
Query: 61 LINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV 120
LI++ + R+S+S+F R+ SLA+ LQ +T LSK DTAF+L S++IP++YFSLLSLGV
Sbjct: 63 LIDASSDYRLSYSQFLRQVQSLAASLQRITGLSKGDTAFILCPPSLKIPVIYFSLLSLGV 122
Query: 121 IISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNS 180
ISP NP+ ++SE+S QI L P IAFA+S HKL L+ T+L+DS EFDSM M+ N
Sbjct: 123 TISPTNPLGSDSEVSHQIHLCKPAIAFASSKTAHKLPSLRLGTVLVDSLEFDSM-MTENG 181
Query: 181 KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA---VM 237
R +V QSD AAI+YSSGTTGRVKGV+LTHRNL +A + ++ V
Sbjct: 182 AGYGKRVEVSQSDPAAILYSSGTTGRVKGVLLTHRNLITLIAGFHHNRLEKEEDGPRPVS 241
Query: 238 LFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSK 297
LFT+P FH++G F RA +L ET V+M+RFD + MLKAVE++R+T+ V+PP+VVA++K
Sbjct: 242 LFTLPLFHVFGFFMLVRAVSLAETLVLMERFDFENMLKAVEKYRITYMPVSPPLVVALAK 301
Query: 298 GGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDE 357
YDLSSL+ + G APLGK+ F+++FP V +VQ YGLTES G DE
Sbjct: 302 SEFVGKYDLSSLQLLGSGGAPLGKEVSERFSARFPNVQMVQGYGLTESGGGAAGMADLDE 361
Query: 358 CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD 417
+R GS GRL +EAKIVDP+TG++LPPG++GEL +RGPTIMKGYVG+ E T+ATL +
Sbjct: 362 AKRHGSVGRLMHDMEAKIVDPKTGEALPPGQQGELWLRGPTIMKGYVGDDEATAATLDQE 421
Query: 418 GWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
GW++TGDLCY D DGFLFIVDRLK+LIKYK YQV P
Sbjct: 422 GWLKTGDLCYFDSDGFLFIVDRLKELIKYKAYQVPP 457
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356571403|ref|XP_003553866.1| PREDICTED: 4-coumarate--CoA ligase-like 9-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 249/446 (55%), Positives = 323/446 (72%), Gaps = 5/446 (1%)
Query: 10 DTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLR 69
D +SGFN A++ FHSL+PP+ LPP +A SA Y SLR + D T ALI++ TG R
Sbjct: 8 DPRSGFNRASRIFHSLKPPLPLPPPNATFSATTYALSLRRNSLF-PDSTTALIDATTGHR 66
Query: 70 VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
+S E R +LA+ ++ +LSK DTA +LS N I++PIL F+LLSLGV++SPANP++
Sbjct: 67 LSHYEVINRIETLANNFTSILKLSKGDTALILSPNLIQVPILCFALLSLGVVVSPANPIS 126
Query: 130 TESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELD--RA 187
T S+++R LS P I F +SVV K RT+L+DSPEFDS+T + H +
Sbjct: 127 TRSDLTRFFHLSKPAIVFTVTSVVEKTQDFHVRTVLLDSPEFDSLTKTRIQIHPPSPLVS 186
Query: 188 KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIY 247
V QSDVAAI+YSSGTTG +KGV++THRNLTA A A R PAV FTMP+FH+Y
Sbjct: 187 PVTQSDVAAILYSSGTTGMMKGVVMTHRNLTALAAGYDAVRVNRKYPAVFFFTMPFFHVY 246
Query: 248 GLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS 307
G FRA L ET V+M+RF L+ ML AVE F VTH AV PP++VA++K T+GYDL
Sbjct: 247 GFTLSFRAMVLSETVVIMERFSLRGMLSAVERFGVTHLAVVPPLMVALTKDSVTNGYDLK 306
Query: 308 SLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRL 367
+LE V CG++PLGK+T AF +KFP V+++Q YGLTESTAGV RT P++ R G+TGRL
Sbjct: 307 TLEGVTCGSSPLGKETAEAFKAKFPNVMILQGYGLTESTAGVART-SPEDANRAGTTGRL 365
Query: 368 SAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCY 427
+G+EAKIV+P TG+++ P ++GEL I+ P+IMKGYVG+PE TSATL+ DGW+RTGDLCY
Sbjct: 366 VSGVEAKIVNPNTGEAMFPCEQGELWIKSPSIMKGYVGDPEATSATLV-DGWLRTGDLCY 424
Query: 428 IDEDGFLFIVDRLKDLIKYKGYQVLP 453
D +GFL++VDRLK+LIKYKGYQV P
Sbjct: 425 FDNEGFLYVVDRLKELIKYKGYQVAP 450
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357440909|ref|XP_003590732.1| 4-coumarate-coa ligase [Medicago truncatula] gi|355479780|gb|AES60983.1| 4-coumarate-coa ligase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 258/445 (57%), Positives = 331/445 (74%), Gaps = 4/445 (0%)
Query: 10 DTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLR 69
D K+GFNS +KTFHSLRPP++LPP A ISA Y SL + + D LI+S T +
Sbjct: 2 DPKTGFNSISKTFHSLRPPLNLPPPHANISAATYTFSLHHS-DFNSDSNTLLIDSTTSHK 60
Query: 70 VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
+S+S F +R +LA L + L+K+ T+F+LS N +++PILYF+LLS+GV++SP NP++
Sbjct: 61 LSYSTFIQRYKTLAKNL-TLRGLTKHHTSFILSPNLVQVPILYFALLSIGVVVSPTNPIS 119
Query: 130 TESEISRQIQLSNPVIAFATSSVVHKLAK-LKHRTILIDSPEFDSMTMSWNSKHELDRAK 188
T SEIS + LS PVIAF TS + HKL K L TILIDSPEF+S+T + + +
Sbjct: 120 TPSEISHLVNLSKPVIAFTTSFLSHKLPKQLALGTILIDSPEFESLTTETDVSSTVSPPE 179
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYG 248
V QSDVA I+YSSGTTG+ KGVMLTHRNLTA VA+ A +PAV L T+P FH+YG
Sbjct: 180 VSQSDVAVILYSSGTTGKSKGVMLTHRNLTATVAAYNAVRIPTANPAVCLLTVPCFHVYG 239
Query: 249 LFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSS 308
+ + A+MET V+M+RF+L ML AVE FRVT+ AV PP+VVAMSK G TDGYDLSS
Sbjct: 240 FTYLLKGVAMMETVVMMERFELGKMLGAVERFRVTNVAVAPPVVVAMSKEGVTDGYDLSS 299
Query: 309 LETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLS 368
L+TVACG APLGKD +AF +KFP ++Q YGLTESTAGV R VGP+E R G+TG+L
Sbjct: 300 LKTVACGGAPLGKDNFVAFMAKFPHASIIQGYGLTESTAGVIRIVGPEEASRGGTTGKLV 359
Query: 369 AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYI 428
+G+EAKIV+P TG+++ PG++GEL +RGP IMKGYVG+P TS TL+ DGW+RTGD+CY
Sbjct: 360 SGMEAKIVNPNTGEAMSPGEQGELWVRGPPIMKGYVGDPVATSVTLV-DGWLRTGDICYF 418
Query: 429 DEDGFLFIVDRLKDLIKYKGYQVLP 453
D +GF+++VDRLK+LIKYKGYQV P
Sbjct: 419 DNEGFVYVVDRLKELIKYKGYQVAP 443
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 456 | ||||||
| TAIR|locus:2158559 | 562 | AT5G63380 [Arabidopsis thalian | 0.982 | 0.797 | 0.493 | 1.1e-110 | |
| TAIR|locus:2034392 | 546 | OPCL1 "OPC-8:0 CoA ligase1" [A | 0.956 | 0.798 | 0.431 | 8.6e-88 | |
| TAIR|locus:2034403 | 550 | AT1G20500 [Arabidopsis thalian | 0.956 | 0.792 | 0.422 | 4.9e-85 | |
| TAIR|locus:2176662 | 550 | 4CL8 [Arabidopsis thaliana (ta | 0.962 | 0.798 | 0.400 | 2.6e-79 | |
| TAIR|locus:2117209 | 566 | AT4G19010 [Arabidopsis thalian | 0.947 | 0.763 | 0.389 | 1.3e-75 | |
| TAIR|locus:2115673 | 544 | AT4G05160 [Arabidopsis thalian | 0.951 | 0.797 | 0.372 | 6.7e-72 | |
| TAIR|locus:2034423 | 565 | AT1G20480 [Arabidopsis thalian | 0.958 | 0.773 | 0.389 | 6.7e-65 | |
| TAIR|locus:2015499 | 542 | ACOS5 "acyl-CoA synthetase 5" | 0.923 | 0.776 | 0.352 | 2.6e-63 | |
| FB|FBgn0039156 | 544 | CG6178 [Drosophila melanogaste | 0.565 | 0.474 | 0.425 | 9.9e-62 | |
| WB|WBGene00008669 | 544 | acs-14 [Caenorhabditis elegans | 0.565 | 0.474 | 0.403 | 6.9e-59 |
| TAIR|locus:2158559 AT5G63380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1093 (389.8 bits), Expect = 1.1e-110, P = 1.1e-110
Identities = 227/460 (49%), Positives = 311/460 (67%)
Query: 7 QLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLR------ATLPWRDDDTVA 60
+L D SGF+ T +HSLRP + LPP D P+SA ++ SL AT +
Sbjct: 9 RLIDRSSGFDQRTGIYHSLRPSLSLPPIDQPLSAAEFALSLLLKSSPPATAGKNIEALTY 68
Query: 61 LINSVTGLRVSFSEFTRRTNSLA-SYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG 119
L+NS +G +++ E RR SLA S + L+ + AF+LS +S++IP+LY +L+S+G
Sbjct: 69 LVNSSSGDNLTYGELLRRVRSLAVSLRERFPSLASRNVAFILSPSSLDIPVLYLALMSIG 128
Query: 120 VIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKL--AKLKHRTILIDSPEFDS-MTM 176
V++SPANP+ +ESE+S Q+++S PVIAFATS V KL + L T+L+DS EF S +
Sbjct: 129 VVVSPANPIGSESEVSHQVEVSEPVIAFATSQTVKKLQSSSLPLGTVLMDSTEFLSWLNR 188
Query: 177 SWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKR-VS-P 234
S +S + +V QSD AAI++SSGTTGRVKGV+LTHRNL A+ A S + + V+
Sbjct: 189 SDSSSVNPFQVQVNQSDPAAILFSSGTTGRVKGVLLTHRNLIASTAVSHQRTLQDPVNYD 248
Query: 235 AVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVA 294
V LF++P FH++G RA +L ET V++ RF+L+ M KAVE+++VT V+PP++VA
Sbjct: 249 RVGLFSLPLFHVFGFMMMIRAISLGETLVLLGRFELEAMFKAVEKYKVTGMPVSPPLIVA 308
Query: 295 MSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354
+ K T YDL SL ++ CG APLGKD F KFP V +VQ YGLTES+ T G
Sbjct: 309 LVKSELTKKYDLRSLRSLGCGGAPLGKDIAERFKQKFPDVDIVQGYGLTESSGPAASTFG 368
Query: 355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL 414
P+E ++GS GR+S +EAKIVDP TG+SLPPGK GEL +RGP IMKGYVG + ++ T+
Sbjct: 369 PEEMVKYGSVGRISENMEAKIVDPSTGESLPPGKTGELWLRGPVIMKGYVGNEKASAETV 428
Query: 415 LPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPL 454
+GW++TGDLCY D + FL+IVDRLK+LIKYK YQV P+
Sbjct: 429 DKEGWLKTGDLCYFDSEDFLYIVDRLKELIKYKAYQVPPV 468
|
|
| TAIR|locus:2034392 OPCL1 "OPC-8:0 CoA ligase1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
Identities = 197/457 (43%), Positives = 277/457 (60%)
Query: 10 DTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLR 69
+++SGF ++ TF+S R PI LPP + + ++SS +A +A I++ TG
Sbjct: 5 NSRSGFCNSNSTFYSKRTPIPLPPNPS-LDVTTFISS-QA-----HRGRIAFIDASTGQN 57
Query: 70 VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
++F+E R S+A L + + K +LS NSI P++ S++SLG II+ NP+N
Sbjct: 58 LTFTELWRAVESVADCLSEIG-IRKGHVVLLLSPNSILFPVVCLSVMSLGAIITTTNPLN 116
Query: 130 TESEISRQIQLSNPVIAFATSSVVHKL--AKLKHRTILIDSPEFDSM-----TMSWNSKH 182
T +EI++QI+ SNPV+AF TS ++ K+ A K +L+D DS+ + K
Sbjct: 117 TSNEIAKQIKDSNPVLAFTTSQLLPKISAAAKKLPIVLMDEERVDSVGDVRRLVEMMKKE 176
Query: 183 EL-DRAK--VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLF 239
+R K V Q D A ++YSSGTTG KGV+ +HRNL A V + +
Sbjct: 177 PSGNRVKERVDQDDTATLLYSSGTTGMSKGVISSHRNLIAMVQTIVNRFGSDDGEQRFIC 236
Query: 240 TMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKG 298
T+P FHIYGL F A T +V+ +F++ M+ A+ +++ T + PPI+VAM G
Sbjct: 237 TVPMFHIYGLAAFATGLLAYGSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVAMVNG 296
Query: 299 GST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPD 356
YDLSS+ TV CG APL K+ FA K+P V ++Q YGLTEST T +
Sbjct: 297 ADQIKAKYDLSSMHTVLCGGAPLSKEVTEGFAEKYPTVKILQGYGLTESTGIGASTDTVE 356
Query: 357 ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP 416
E RR+G+ G+LSA +E +IVDP TG L P + GEL ++GP+IMKGY E TS+TL
Sbjct: 357 ESRRYGTAGKLSASMEGRIVDPVTGQILGPKQTGELWLKGPSIMKGYFSNEEATSSTLDS 416
Query: 417 DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
+GW+RTGDLCYIDEDGF+F+VDRLK+LIKYKGYQV P
Sbjct: 417 EGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVAP 453
|
|
| TAIR|locus:2034403 AT1G20500 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
Identities = 195/461 (42%), Positives = 273/461 (59%)
Query: 8 LFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTG 67
+ D +SGF + TF+S R P+ LPP +S D V++ ++ P R A I++ TG
Sbjct: 9 IVDPRSGFCKSNSTFYSKRQPLSLPPN---LSR-D-VTTFISSQPHRGK--TAFIDAATG 61
Query: 68 LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANP 127
++FS+ R + +A L + + + D +LS NSI IP++ S++SLG + + AN
Sbjct: 62 QCLTFSDLWRAVDRVADCLYHEVGIRRGDVVLILSPNSIFIPVVCLSVMSLGAVFTTANT 121
Query: 128 VNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMT--------MSWN 179
+NT EIS+QI SNP + F T + KL + +L D + +T +S
Sbjct: 122 LNTSGEISKQIADSNPTLVFTTRQLAPKLP-VAISVVLTDDEVYQELTSAIRVVGILSEM 180
Query: 180 SKHELD----RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA 235
K E R +V Q D A ++YSSGTTG KGV+ +HRNLTA VA + + KR
Sbjct: 181 VKKEPSGQRVRDRVNQDDTAMMLYSSGTTGPSKGVISSHRNLTAHVARFISDNLKRDD-- 238
Query: 236 VMLFTMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVA 294
+ + T+P FH YGL F AL T V+++RF L M+ AVE+ R T A+ PP++VA
Sbjct: 239 IFICTVPMFHTYGLLTFAMGTVALGSTVVILRRFQLHDMMDAVEKHRATALALAPPVLVA 298
Query: 295 MSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352
M YDLSSL+TV CG APL K+ F K+P V ++Q Y LTES G T
Sbjct: 299 MINDADLIKAKYDLSSLKTVRCGGAPLSKEVTEGFLEKYPTVDILQGYALTESNGGGAFT 358
Query: 353 VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSA 412
+E RR+G+ G L++ +EA+IVDP TG + + GEL ++GP+I KGY E T+
Sbjct: 359 NSAEESRRYGTAGTLTSDVEARIVDPNTGRFMGINQTGELWLKGPSISKGYFKNQEATNE 418
Query: 413 TLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
T+ +GW++TGDLCYIDEDGFLF+VDRLK+LIKYKGYQV P
Sbjct: 419 TINLEGWLKTGDLCYIDEDGFLFVVDRLKELIKYKGYQVPP 459
|
|
| TAIR|locus:2176662 4CL8 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
Identities = 187/467 (40%), Positives = 269/467 (57%)
Query: 3 KKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALI 62
+++ L D ++GF ++ TF+S R P+ LP +++ + ++SS +R A I
Sbjct: 5 QRSSSLIDPRNGFCTSNSTFYSKRKPLALPSKES-LDITTFISSQT----YRGK--TAFI 57
Query: 63 NSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVII 122
++ T R+SFS+ + +A L + + + D VLS N+I IPI+ S++SLG ++
Sbjct: 58 DAATDHRISFSDLWMAVDRVADCLLHDVGIRRGDVVLVLSPNTISIPIVCLSVMSLGAVL 117
Query: 123 SPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTIL--IDS----PE----FD 172
+ ANP+NT SEI RQI SNP +AF T + K+A +L ++ P
Sbjct: 118 TTANPLNTASEILRQIADSNPKLAFTTPELAPKIASSGISIVLERVEDTLRVPRGLKVVG 177
Query: 173 SMT--MSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK 230
++T M + R +V + D A ++YSSGTTGR KGV +H NL A VA + + P
Sbjct: 178 NLTEMMKKEPSGQAVRNQVHKDDTAMLLYSSGTTGRSKGVNSSHGNLIAHVAR-YIAEPF 236
Query: 231 RVSPAVMLFTMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTP 289
+ T+P FH +GL F AL T V++ RFDL M+ AVE++R T + P
Sbjct: 237 EQPQQTFICTVPLFHTFGLLNFVLATLALGTTVVILPRFDLGEMMAAVEKYRATTLILVP 296
Query: 290 PIVVAM-SKGGST-DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTA 347
P++V M +K YD+S L TV CG APL K+ F K+P V + Q Y LTES
Sbjct: 297 PVLVTMINKADQIMKKYDVSFLRTVRCGGAPLSKEVTQGFMKKYPTVDVYQGYALTESNG 356
Query: 348 GVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYV-GE 406
+E RR+G+ G LS G+EA+IVDP TG + + GEL ++GP+I KGY E
Sbjct: 357 AGASIESVEESRRYGAVGLLSCGVEARIVDPNTGQVMGLNQTGELWLKGPSIAKGYFRNE 416
Query: 407 PEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
E+ ++ +GW++TGDLCYID DGFLFIVDRLK+LIKYKGYQV P
Sbjct: 417 EEIITS----EGWLKTGDLCYIDNDGFLFIVDRLKELIKYKGYQVPP 459
|
|
| TAIR|locus:2117209 AT4G19010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
Identities = 177/454 (38%), Positives = 266/454 (58%)
Query: 15 FNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSE 74
F+S T + S P + LP D + AV + S + DT ALI+S+TG +S +E
Sbjct: 25 FSSKTGIYTSKFPSLHLPV-DPNLDAVSALFSHK-----HHGDT-ALIDSLTGFSISHTE 77
Query: 75 FTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEI 134
S+A+ + +V + + D ++ NS+ P+++ SL+SLG I++ NP ++ EI
Sbjct: 78 LQIMVQSMAAGIYHVLGVRQGDVVSLVLPNSVYFPMIFLSLISLGAIVTTMNPSSSLGEI 137
Query: 135 SRQIQLSNPVIAFATSSVVHKLAKLKHRTILI-DSPEFDSMTMS----WNSKHE----LD 185
+Q+ + +AF ++ V KL+ L I + +S +FDS+ + ++ E +
Sbjct: 138 KKQVSECSVGLAFTSTENVEKLSSLGVSVISVSESYDFDSIRIENPKFYSIMKESFGFVP 197
Query: 186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS--SFASSPKRV--SPAVMLFTM 241
+ + Q DVAAIMYSSGTTG KGV+LTHRNL A++ F +S S V L +
Sbjct: 198 KPLIKQDDVAAIMYSSGTTGASKGVLLTHRNLIASMELFVRFEASQYEYPGSSNVYLAAL 257
Query: 242 PYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS 300
P HIYGL F +L T VVM+RFD ++ +E F++TH V PP+++A++K
Sbjct: 258 PLCHIYGLSLFVMGLLSLGSTIVVMKRFDASDVVNVIERFKITHFPVVPPMLMALTKKAK 317
Query: 301 -TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECR 359
G SL+ V+ GAAPL + I F P V L+Q YG+TESTA R ++
Sbjct: 318 GVCGEVFKSLKQVSSGAAPLSRKFIEDFLQTLPHVDLIQGYGMTESTAVGTRGFNSEKLS 377
Query: 360 RWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGW 419
R+ S G L+ ++AK+VD +G LPPG GEL I+GP +MKGY+ P+ T +++ D W
Sbjct: 378 RYSSVGLLAPNMQAKVVDWSSGSFLPPGNRGELWIQGPGVMKGYLNNPKATQMSIVEDSW 437
Query: 420 MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
+RTGD+ Y DEDG+LFIVDR+K++IKYKG+Q+ P
Sbjct: 438 LRTGDIAYFDEDGYLFIVDRIKEIIKYKGFQIAP 471
|
|
| TAIR|locus:2115673 AT4G05160 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
Identities = 171/459 (37%), Positives = 262/459 (57%)
Query: 12 KSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVS 71
KSG+ + SLRP + LP +D S V ++ ++ P + +A+ +S TG ++
Sbjct: 3 KSGYGR-DGIYRSLRPTLVLP-KDPNTSLVSFLFRNSSSYPSK----LAIADSDTGDSLT 56
Query: 72 FSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTE 131
FS+ LA + + KND + + NS + P+ + ++ ++G + + ANP+ T
Sbjct: 57 FSQLKSAVARLAHGFHRLG-IRKNDVVLIFAPNSYQFPLCFLAVTAIGGVFTTANPLYTV 115
Query: 132 SEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDS-------PEFDSMTMSWNSKHEL 184
+E+S+QI+ SNP I + + + K+ +L+ S P +S +S+++ EL
Sbjct: 116 NEVSKQIKDSNPKIIISVNQLFDKIKGFDLPVVLLGSKDTVEIPPGSNSKILSFDNVMEL 175
Query: 185 DR-------AKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAA-VASSFASSPKRVSPAV 236
++ QSD AA++YSSGTTG KGV LTH N AA + + V
Sbjct: 176 SEPVSEYPFVEIKQSDTAALLYSSGTTGTSKGVELTHGNFIAASLMVTMDQDLMGEYHGV 235
Query: 237 MLFTMPYFHIYGLFFCFRAAALMETAVV-MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAM 295
L +P FH++GL + A+V M RF+L+++LK +E+FRVTH V PP+ +A+
Sbjct: 236 FLCFLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKFRVTHLWVVPPVFLAL 295
Query: 296 SKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGP 355
SK +DLSSL+ + GAAPLGKD + P V+L+Q YG+TE T G+ P
Sbjct: 296 SKQSIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQGYGMTE-TCGIVSVEDP 354
Query: 356 DECRR-WGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL 414
+R GS G L+ G+EA+IV ETG S PP ++GE+ +RGP +MKGY+ P+ T T+
Sbjct: 355 RLGKRNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNMMKGYLNNPQATKETI 414
Query: 415 LPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
W+ TGDL Y +EDG L++VDR+K+LIKYKG+QV P
Sbjct: 415 DKKSWVHTGDLGYFNEDGNLYVVDRIKELIKYKGFQVAP 453
|
|
| TAIR|locus:2034423 AT1G20480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
Identities = 186/477 (38%), Positives = 258/477 (54%)
Query: 1 MEKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVA 60
+E +T + D KSGF +T F+S R P+ LPP +D V+S A+ P R TV
Sbjct: 14 IESRTLAV-DRKSGFCESTSIFYSKREPMALPPNQF----LD-VTSFIASQPHRGK-TV- 65
Query: 61 LINSVTGLRVSFSEFTRRTNSLAS--YLQNVTR------LSKNDTAFV---LSTNSIEIP 109
+++VTG R+SF E +A Y V + LS N F LS S+
Sbjct: 66 FVDAVTGRRLSFPELWLGVERVAGCLYALGVRKGNVVIILSPNSILFPIVSLSVMSLGAI 125
Query: 110 ILYFSLLSLGVIISP----ANPV---NTESEISRQIQLSN---PVIAFATSSVVHKLAKL 159
I + ++ IS + PV T +S+ SN PV+ V +
Sbjct: 126 ITTANPINTSDEISKQIGDSRPVLAFTTCKLVSKLAAASNFNLPVVLMDDYHVPSQ--SY 183
Query: 160 KHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA 219
R L+ ++M + S+ + + +V Q D AA++YSSGTTG KGVML+HRNL A
Sbjct: 184 GDRVKLVG--RLETMIETEPSESRV-KQRVNQDDTAALLYSSGTTGTSKGVMLSHRNLIA 240
Query: 220 AVASSFASSPKRVSPAVMLFTMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVE 278
V + A + T+P HI+G F AL T VV+ +FD+ +L AVE
Sbjct: 241 LVQAYRARFGLEQRT---ICTIPMCHIFGFGGFATGLIALGWTIVVLPKFDMAKLLSAVE 297
Query: 279 EFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVL 336
R ++ ++ PPIVVAM G + YDLSSL TV G APL ++ F +PKV +
Sbjct: 298 THRSSYLSLVPPIVVAMVNGANEINSKYDLSSLHTVVAGGAPLSREVTEKFVENYPKVKI 357
Query: 337 VQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG 396
+Q YGLTESTA +E +R+G++G L+ +E KIVDP+TG L + GEL IR
Sbjct: 358 LQGYGLTESTAIAASMFNKEETKRYGASGLLAPNVEGKIVDPDTGRVLGVNQTGELWIRS 417
Query: 397 PTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
PT+MKGY E T++T+ +GW++TGDLCYID DGF+F+VDRLK+LIK GYQV P
Sbjct: 418 PTVMKGYFKNKEATASTIDSEGWLKTGDLCYIDGDGFVFVVDRLKELIKCNGYQVAP 474
|
|
| TAIR|locus:2015499 ACOS5 "acyl-CoA synthetase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
Identities = 158/448 (35%), Positives = 242/448 (54%)
Query: 22 FHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNS 81
F SL P + +P + ++ ++V L+ + ++ VA + +VTG V++ + R T
Sbjct: 13 FRSLYPSVPIPDK---LTLPEFV--LQGVEEYTEN--VAFVEAVTGKAVTYGDVVRDTKR 65
Query: 82 LASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLS 141
LA L ++ L K V+ N E I+ ++S G + S ANP SEI +Q++ S
Sbjct: 66 LAKALTSLG-LRKGQVMVVVLPNVAEYGIIALGIMSAGGVFSGANPTALVSEIKKQVEAS 124
Query: 142 NP--VIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHEL-------DRAKVCQS 192
+I AT+ K+ L I++ + + ++W E D ++ Q+
Sbjct: 125 GARGIITDATN--YEKVKSLGLPVIVLGEEKIEG-AVNWKDLLEAGDKCGDTDNEEILQT 181
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS-FASSPKRVSPAVMLFTMPYFHIYGLF- 250
D+ A+ +SSGTTG KGVMLTHRNL A + S+ F + + V L +P+FHIYG+
Sbjct: 182 DLCALPFSSGTTGLQKGVMLTHRNLIANLCSTLFGVRSEMIGQIVTLGLIPFFHIYGIVG 241
Query: 251 FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSL- 309
C V M R+DL++ L A+ V+ A + PPI++ + K D +DLS L
Sbjct: 242 ICCATMKNKGKVVAMSRYDLRIFLNALIAHEVSFAPIVPPIILNLVKNPIVDEFDLSKLK 301
Query: 310 -ETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECR---RWGSTG 365
++V AAPL + + AF +KFP V + +AYGLTE + P++ + + S G
Sbjct: 302 LQSVMTAAAPLAPELLTAFEAKFPNVQVQEAYGLTEHSCITLTHGDPEKGQGIAKRNSVG 361
Query: 366 RLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDL 425
+ LE K +DP+TG SLP GEL +R +M+GY E T T+ GW+ TGD+
Sbjct: 362 FILPNLEVKFIDPDTGRSLPKNTSGELCVRSQCVMQGYFMNKEETDKTIDEQGWLHTGDI 421
Query: 426 CYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
YID+DG +FIVDR+K+LIKYKG+QV P
Sbjct: 422 GYIDDDGDIFIVDRIKELIKYKGFQVAP 449
|
|
| FB|FBgn0039156 CG6178 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 520 (188.1 bits), Expect = 9.9e-62, Sum P(2) = 9.9e-62
Identities = 111/261 (42%), Positives = 155/261 (59%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFC 252
DV+ I+ SSGTTG KGV LT NL A + S + + +L +P+FH +G
Sbjct: 192 DVSLIVCSSGTTGLPKGVQLTQMNLLATLDSQIQPTVIPMEEVTLLTVIPWFHAFGCLTL 251
Query: 253 FRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETV 312
A + V + +F+ K+ L A+E++RV A + PP++V ++K D YDLSSL +
Sbjct: 252 ITTACVGARLVYLPKFEEKLFLSAIEKYRVMMAFMVPPLMVFLAKHPIVDKYDLSSLMVL 311
Query: 313 ACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLE 372
CGAAPL ++T + + Q YGL+EST V V DE + GS G L G+
Sbjct: 312 LCGAAPLSRETEDQIKERIGVPFIRQGYGLSESTLSVL--VQNDEFCKPGSVGVLKVGIY 369
Query: 373 AKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDG 432
AK++DP+TG L + GEL +G IMKGY+G+ + T T + DGW+ TGD+ Y D+D
Sbjct: 370 AKVIDPDTGKLLGANERGELCFKGDGIMKGYIGDTKSTQ-TAIKDGWLHTGDIGYYDDDF 428
Query: 433 FLFIVDRLKDLIKYKGYQVLP 453
FIVDR+K+LIKYKGYQV P
Sbjct: 429 EFFIVDRIKELIKYKGYQVPP 449
|
|
| WB|WBGene00008669 acs-14 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 496 (179.7 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 111/275 (40%), Positives = 161/275 (58%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRV----SP-------AVMLFT 240
+D+ + YSSGTTG KGVML+H N T+ ++ A + P +LF
Sbjct: 183 NDLLVLPYSSGTTGPPKGVMLSHYNFTSMISMYLAIDKSHILDVLDPNWDCYNEKALLF- 241
Query: 241 MPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS 300
+P++H+YG T +VM F+ L AV+ ++V + PPI+V ++K
Sbjct: 242 LPFYHVYGFGLLNHCLLKGMTGIVMSHFEPNNFLTAVQNYKVRCLCLVPPIMVFLAKHPI 301
Query: 301 TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ-AYGLTE-STAGVFRTVGPDEC 358
D +DLSS++ + GAAP GKD I K+ + +Q YG+TE S A + D+
Sbjct: 302 CDKFDLSSVQMIMAGAAPAGKDLIEELKRKYTNLKYIQQGYGMTECSMASHLPDLRNDQ- 360
Query: 359 RRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG 418
+GS G+L++ L KIV+P T P + GE+ +RGPTIM GY+G PE T++T++ DG
Sbjct: 361 -PYGSVGKLASNLVMKIVEPGTDREQPVNQRGEICVRGPTIMLGYLGRPEATASTVI-DG 418
Query: 419 WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
W+ TGD+ Y++EDG LFIVDRLK+LIK KG QV P
Sbjct: 419 WLHTGDIGYLNEDGNLFIVDRLKELIKVKGLQVPP 453
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 456 | |||
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 1e-174 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 1e-126 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 1e-113 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 1e-101 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 1e-100 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 3e-94 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 1e-90 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 1e-83 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 2e-81 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 5e-81 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 4e-79 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 4e-77 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 6e-70 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 7e-64 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 3e-63 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 9e-61 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 1e-60 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 3e-58 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 5e-58 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 1e-56 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 1e-56 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 6e-55 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 9e-55 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 1e-52 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 8e-50 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 2e-49 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 1e-48 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 3e-48 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 4e-48 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 5e-48 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 6e-48 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 2e-47 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 7e-47 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 6e-46 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 7e-46 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 1e-45 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 1e-44 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 2e-44 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 5e-44 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 5e-43 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 2e-42 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 5e-42 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 1e-40 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 1e-40 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 1e-40 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 6e-40 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 8e-40 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 1e-39 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 3e-39 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 1e-38 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 4e-38 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 7e-38 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 9e-38 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 4e-37 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 2e-36 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 2e-36 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 5e-36 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 1e-35 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 2e-34 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 1e-33 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 5e-33 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 2e-32 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 3e-32 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 5e-32 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 6e-32 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 8e-32 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 4e-31 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 4e-31 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 8e-31 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 5e-29 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 5e-29 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 8e-29 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 9e-29 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 2e-28 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 4e-28 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 9e-28 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 9e-28 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 1e-27 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 2e-27 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 2e-27 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 5e-27 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 6e-27 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 3e-26 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 4e-26 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 1e-25 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 2e-25 | |
| PRK05850 | 578 | PRK05850, PRK05850, acyl-CoA synthetase; Validated | 1e-24 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 2e-24 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 2e-24 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 2e-24 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 3e-24 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 4e-24 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 6e-24 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 1e-23 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 2e-23 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 4e-23 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 5e-23 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 5e-23 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 6e-23 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 1e-22 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 1e-22 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 8e-22 | |
| PRK13390 | 501 | PRK13390, PRK13390, acyl-CoA synthetase; Provision | 8e-22 | |
| PRK13382 | 537 | PRK13382, PRK13382, acyl-CoA synthetase; Provision | 1e-21 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 2e-21 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 3e-21 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 4e-21 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 1e-20 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 6e-20 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 7e-20 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 7e-20 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 9e-20 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 3e-19 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 4e-19 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 4e-19 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 4e-19 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 5e-19 | |
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 1e-18 | |
| cd05924 | 365 | cd05924, FACL_like_5, Uncharacterized subfamily of | 2e-18 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 7e-18 | |
| PRK07769 | 631 | PRK07769, PRK07769, long-chain-fatty-acid--CoA lig | 9e-18 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 9e-18 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 1e-17 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 2e-17 | |
| PRK07638 | 487 | PRK07638, PRK07638, acyl-CoA synthetase; Validated | 3e-17 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 4e-17 | |
| PRK12476 | 612 | PRK12476, PRK12476, putative fatty-acid--CoA ligas | 8e-17 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 2e-16 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-15 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 3e-15 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 5e-15 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 7e-15 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 9e-15 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 9e-15 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 1e-14 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 3e-14 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 8e-14 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 1e-13 | |
| PRK07824 | 358 | PRK07824, PRK07824, O-succinylbenzoic acid--CoA li | 2e-13 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 2e-13 | |
| PRK05851 | 525 | PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c | 3e-13 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 4e-13 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 8e-13 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 1e-12 | |
| PTZ00342 | 746 | PTZ00342, PTZ00342, acyl-CoA synthetase; Provision | 4e-12 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 7e-12 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 9e-11 | |
| PRK10524 | 629 | PRK10524, prpE, propionyl-CoA synthetase; Provisio | 1e-10 | |
| PRK13383 | 516 | PRK13383, PRK13383, acyl-CoA synthetase; Provision | 4e-10 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 5e-10 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 6e-10 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 9e-10 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 2e-09 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 5e-09 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 2e-08 | |
| PTZ00237 | 647 | PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi | 4e-08 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 7e-08 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 1e-07 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 2e-07 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 3e-07 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 5e-07 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 6e-07 | |
| PTZ00342 | 746 | PTZ00342, PTZ00342, acyl-CoA synthetase; Provision | 8e-07 | |
| PRK06060 | 705 | PRK06060, PRK06060, acyl-CoA synthetase; Validated | 2e-06 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 3e-06 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 1e-05 | |
| COG1541 | 438 | COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme | 2e-05 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 2e-05 | |
| cd05913 | 424 | cd05913, PaaK, Phenylacetate-CoA ligase (also know | 1e-04 | |
| PRK07445 | 452 | PRK07445, PRK07445, O-succinylbenzoic acid--CoA li | 2e-04 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 9e-04 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 0.001 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 0.001 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 0.002 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 0.004 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 498 bits (1285), Expect = e-174
Identities = 191/428 (44%), Positives = 257/428 (60%), Gaps = 13/428 (3%)
Query: 32 PPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTR 91
P+D + + + + D ALI++ TG ++++E R LA+ L
Sbjct: 1 IPKDLSLDSASLLFASEFG------DRPALIDAATGRALTYAELERLVRRLAAGLAARG- 53
Query: 92 LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSS 151
K D +LS NS+E P+++ ++LS G +++ ANP+ T +EI++Q++ S +A TS
Sbjct: 54 GRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTPAEIAKQVKDSGAKLAITTSE 113
Query: 152 VVHKLAKLK-HRTILIDSPEFDSMTMSWNSKH---ELDRAKVCQSDVAAIMYSSGTTGRV 207
+ KLA L +L+DS + S + E + Q DVAA+ YSSGTTGR
Sbjct: 114 LAEKLASLALEPVVLLDSADDGSAAIDDLLFADEPEPPVVVIKQDDVAALPYSSGTTGRS 173
Query: 208 KGVMLTHRNLTAAVASSFASSPKRVSP-AVMLFTMPYFHIYGL-FFCFRAAALMETAVVM 265
KGVMLTHRNL A VA A V L +P FHIYGL L T VVM
Sbjct: 174 KGVMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLRLGATVVVM 233
Query: 266 QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIM 325
RFDL+ L A+E+++VTH V PPIV+A+ K D YDLSSL+ + GAAPLGK+
Sbjct: 234 PRFDLEKFLAAIEKYKVTHLPVVPPIVLALVKHPIVDKYDLSSLKQIGSGAAPLGKELAE 293
Query: 326 AFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLP 385
AF ++FP V L Q YG+TES+ P++ + GS GRL +EAKIVDPETG+SLP
Sbjct: 294 AFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVPNVEAKIVDPETGESLP 353
Query: 386 PGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIK 445
P + GEL +RGP +MKGY+ PE T+ T+ DGW+ TGDL Y DEDG+LFIVDRLK+LIK
Sbjct: 354 PNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYFDEDGYLFIVDRLKELIK 413
Query: 446 YKGYQVLP 453
YKG+QV P
Sbjct: 414 YKGFQVAP 421
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 373 bits (961), Expect = e-126
Identities = 156/411 (37%), Positives = 231/411 (56%), Gaps = 21/411 (5%)
Query: 60 ALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG 119
ALI++ TG ++F++ ++ LA L+ + L + D ++S NSIE P ++ L+ G
Sbjct: 1 ALIDADTGTELTFADLLKKALRLAKGLRKL-GLKQGDVVALISPNSIEFPPVFLGCLAAG 59
Query: 120 VIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKL------AKLKHRTILIDS----- 168
I+S ANP T E++ Q+++S P + F + K+ R I++DS
Sbjct: 60 GIVSAANPSYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDSAPDGV 119
Query: 169 -PEFDSMTMSWNSKHEL--DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF 225
D + ++ E + D AA++YSSGTTG KGVML+H+N+ A ++
Sbjct: 120 LRIEDLLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQ 179
Query: 226 AS---SPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRV 282
+ +P + V+ F +P++H YGL + T ++M +FD + LK +E+++V
Sbjct: 180 DTLKGNPDSSNDVVLTF-LPFYHAYGLTTTLASLLCGATVIIMPKFDSETFLKLIEKYKV 238
Query: 283 THAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342
T + PPI VA++K D YDLSSL + GAAPL K+ +FP + Q YG+
Sbjct: 239 TSLFLVPPIAVALAKSPLVDKYDLSSLRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGM 298
Query: 343 TESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
TE+ T DE + GS GRL +EAKIVD + G SL P + GEL ++GP IMKG
Sbjct: 299 TETGPATTLTPPGDE--KPGSVGRLVPNVEAKIVDEDGGKSLGPNERGELCVKGPQIMKG 356
Query: 403 YVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
Y+ PE T T+ DGW+ TGD+ Y DEDG +IVDR K+LIKYKGYQV P
Sbjct: 357 YLNNPEATKETIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKYKGYQVPP 407
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 343 bits (881), Expect = e-113
Identities = 185/457 (40%), Positives = 267/457 (58%), Gaps = 27/457 (5%)
Query: 15 FNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSE 74
++ T + S PP+ LP D + AV ++ S + DT ALI+S TG +S+SE
Sbjct: 18 YSPETGIYSSKHPPVPLP-SDPNLDAVSFIFSHHN----HNGDT-ALIDSSTGFSISYSE 71
Query: 75 FTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEI 134
S+A+ L +V + + D +L NS+ P+++ ++LSLG I++ NP ++ EI
Sbjct: 72 LQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEI 131
Query: 135 SRQIQLSNPVIAFATSSVVHKLAKLKHRTILI-DSPEFDSMTMSWNSKHELDRAK----- 188
+++ + +AF + V KL+ L I + ++ +FDS + + +EL +
Sbjct: 132 KKRVVDCSVGLAFTSPENVEKLSPLGVPVIGVPENYDFDSKRIEFPKFYELIKEDFDFVP 191
Query: 189 ---VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAV-------ASSFASSPKRVSPAVML 238
+ Q DVAAIMYSSGTTG KGV+LTHRNL A V AS + S V L
Sbjct: 192 KPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPG---SDNVYL 248
Query: 239 FTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSK 297
+P FHIYGL F +L T VVM+RFD M+K ++ F+VTH V PPI++A++K
Sbjct: 249 AALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTK 308
Query: 298 GG-STDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPD 356
G L SL+ V+CGAAPL I F P V +Q YG+TESTA R +
Sbjct: 309 KAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTE 368
Query: 357 ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP 416
+ ++ S G L+ ++AK+VD TG LPPG GEL I+GP +MKGY+ P+ T +T+
Sbjct: 369 KLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDK 428
Query: 417 DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
DGW+RTGD+ Y DEDG+L+IVDRLK++IKYKG+Q+ P
Sbjct: 429 DGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAP 465
|
Length = 560 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 313 bits (804), Expect = e-101
Identities = 169/473 (35%), Positives = 237/473 (50%), Gaps = 64/473 (13%)
Query: 16 NSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEF 75
S F S P I +P + DY + D LI+ TG ++++
Sbjct: 4 ASEEFIFRSKLPDIYIPNH---LPLHDYCFERLSEFS----DRPCLIDGATGRVYTYADV 56
Query: 76 TRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEIS 135
+ +A+ L + + + D +L N E + + G + + ANP T +EI+
Sbjct: 57 ELLSRRVAAGLHKLG-IRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIA 115
Query: 136 RQIQLSNPVIAFATSSVVHKLAKLKHRT----ILIDSPE-----FDSMTMSWNSKHELDR 186
+Q + S + S V KL L + ID P F +T + + EL
Sbjct: 116 KQAKASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDDPPEGCLHFSELTQADEN--ELPE 173
Query: 187 AKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRV----------SPAV 236
++ DV A+ YSSGTTG KGVMLTH+ L +VA ++V S V
Sbjct: 174 VEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVA-------QQVDGENPNLYFHSDDV 226
Query: 237 MLFTMPYFHIYGL---FFC-FRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIV 292
+L +P FHIY L C R A ++M +F++ +L+ ++ +VT A PPIV
Sbjct: 227 ILCVLPMFHIYSLNSVLLCGLRVGA---AILIMPKFEIGALLELIQRHKVTIAPFVPPIV 283
Query: 293 VAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG---- 348
+A++K + YDLSS+ V GAAPLGK+ AF +K P VL Q YG+TE AG
Sbjct: 284 LAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTE--AGPVLA 341
Query: 349 --------VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIM 400
F + GS G + E KIVDPETG SLP + GE+ IRGP IM
Sbjct: 342 MCLAFAKEPFPV-------KSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIM 394
Query: 401 KGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
KGY+ +PE T+ T+ DGW+ TGD+ YID+D LFIVDRLK+LIKYKG+QV P
Sbjct: 395 KGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAP 447
|
Length = 537 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 308 bits (791), Expect = e-100
Identities = 141/413 (34%), Positives = 213/413 (51%), Gaps = 18/413 (4%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
D ALI G R+++ E RR N LA+ LQ + + D +L NS E I + + L
Sbjct: 26 DRPALIFLGRGGRLTYRELDRRANRLAAALQAL-GVKPGDRVAILLPNSPEFLIAFLAAL 84
Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKH-----RTILIDSPEF 171
G + P NP T E++ + + + ++ L + +L+
Sbjct: 85 RAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDAD 144
Query: 172 DSMTMSWNSKH------ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF 225
D + ++ + + D V D+A ++Y+SGTTG KGV+LTHRNL A A
Sbjct: 145 DRLPITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIA 204
Query: 226 ASSPKRVSPA-VMLFTMPYFHIYGLFFCFRAAALMETAVVM---QRFDLKMMLKAVEEFR 281
A+ ++P V+L +P FHI+GL A L +V+ + FD + +L +E+++
Sbjct: 205 AALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYK 264
Query: 282 VTHAAVTPPIVVAMSKGGSTDGYDLSS-LETVACGAAPLGKDTIMAFASKFPKVVLVQAY 340
VT + P + + D DLSS L V G APL + + F +F + +++ Y
Sbjct: 265 VTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGY 324
Query: 341 GLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIM 400
GLTE++ V D + GS GR G+E +IVDP+ G+ LP G+ GE+ +RGP +M
Sbjct: 325 GLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEVGEIWVRGPNVM 383
Query: 401 KGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
KGY PE T+ DGW+RTGDL Y+DEDG+L+IV RLKDLI G + P
Sbjct: 384 KGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYP 436
|
Length = 534 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 290 bits (743), Expect = 3e-94
Identities = 118/399 (29%), Positives = 184/399 (46%), Gaps = 21/399 (5%)
Query: 71 SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNT 130
++ E R N LA+ L+ + + D +L NS E + ++L G P +P
Sbjct: 1 TYRELDERANRLAAALRAL-GVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLP 59
Query: 131 ESEISRQIQLSNPVIAFATSSVVHKLA------KLKHRTILIDSPEFDSMTMSWNSKHEL 184
++ ++ S + ++ KL + I++ +
Sbjct: 60 AERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELLAGA 119
Query: 185 DRAKVCQS----DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFT 240
D+A I+Y+SGTTG+ KGVMLTHRNL A A V+L
Sbjct: 120 SAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTPGDRVLLLL 179
Query: 241 MPYF--HIYGLFFCFRAAALMETAVVMQRFDL--KMMLKAVEEFRVTHAAVTPPIVVAMS 296
+F ++ +F A T V++ +F L +L +E+++VT P ++ +
Sbjct: 180 PLHFDGSVWEIFGPLLAGG---TLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTLLRLLL 236
Query: 297 KGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPD 356
K YDLSSL V G PL + + +F V LV YG TE+T + D
Sbjct: 237 KAPEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGD 296
Query: 357 ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP 416
+ GS GR G+E K++D E +PPG+ GEL IRGP + +GY+ +PE+T+ +
Sbjct: 297 PEVKPGSIGRPLPGVEVKVLDEEGEP-VPPGEVGELCIRGPGVARGYLNDPELTAERFVE 355
Query: 417 DGWM--RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
DGW RTGDL DEDG+L I+ R D +K +G ++ P
Sbjct: 356 DGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIRGERIEP 394
|
Length = 412 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 282 bits (725), Expect = 1e-90
Identities = 138/402 (34%), Positives = 189/402 (47%), Gaps = 36/402 (8%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
D AL G +++++E ++ A+YLQ + K D ++ N + PI YF +L
Sbjct: 14 DRPALTF--FGRKLTYAELDELSDRFAAYLQQ-LGVKKGDRVALMLPNCPQFPIAYFGIL 70
Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTM 176
G ++ P NP+ T E+ Q+ S + S LA
Sbjct: 71 KAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVAISFEDALA------------------- 111
Query: 177 SWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA- 235
+ ++ D+A + Y+ GTTG KG MLTHRNL A V A
Sbjct: 112 --SGAPLPLPVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQIAAWVKDLREGED 169
Query: 236 VMLFTMPYFHIYGLFFC----FRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPI 291
L +P FHI+GL R A T V++ F +LK ++ +R T P +
Sbjct: 170 RFLTALPLFHIFGLTVNMLLGLRLGA---TNVLVPNFRPINVLKEIKRYRFTIFPGVPTL 226
Query: 292 VVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFR 351
A+ YD SSL G APL + F K LV+ YGLTE T+ V
Sbjct: 227 YNALLNHPEFKKYDFSSLRLCISGGAPLPVEVAERFEEKT-GAPLVEGYGLTE-TSPVTT 284
Query: 352 TVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTS 411
D R+ GS G G E KIVD E G+ LPPG+ GEL +RGP +MKGY PE T+
Sbjct: 285 VNPLDGERKPGSIGLPLPGTEVKIVDDE-GNELPPGEVGELVVRGPQVMKGYWNRPEETA 343
Query: 412 ATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
L DGW+RTGD+ Y+DEDG+ +IVDR KD+I G+ V P
Sbjct: 344 EVL-TDGWLRTGDIGYMDEDGYFYIVDRKKDMIIVGGFNVYP 384
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 266 bits (682), Expect = 1e-83
Identities = 157/447 (35%), Positives = 235/447 (52%), Gaps = 24/447 (5%)
Query: 22 FHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNS 81
F S P + P+ + D+V L+ + D VA + +VTG V++ E R T
Sbjct: 15 FRSRYPSV-PVPDKLTLP--DFV--LQDAELYADK--VAFVEAVTGKAVTYGEVVRDTRR 67
Query: 82 LASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLS 141
A L+++ L K V+ N E I+ +++ G + S ANP ESEI +Q + +
Sbjct: 68 FAKALRSLG-LRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAA 126
Query: 142 NPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWN--------SKHELDRAKVCQSD 193
+ + K+ L I++ E ++W + D ++ Q+D
Sbjct: 127 GAKLIVTNDTNYGKVKGLGLPVIVL-GEEKIEGAVNWKELLEAADRAGDTSDNEEILQTD 185
Query: 194 VAAIMYSSGTTGRVKGVMLTHRNLTAAVASS-FASSPKRVSPAVMLFTMPYFHIYGLF-F 251
+ A+ +SSGTTG KGVMLTHRNL A + SS F+ P+ + V L +P+FHIYG+
Sbjct: 186 LCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGI 245
Query: 252 CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSL-- 309
C VVM RF+L+ L A+ V+ A + PPI++ + K + +DLS L
Sbjct: 246 CCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKL 305
Query: 310 ETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECR---RWGSTGR 366
+ + AAPL + + AF +KFP V + +AYGLTE + P++ + S G
Sbjct: 306 QAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGF 365
Query: 367 LSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLC 426
+ LE K +DP+TG SLP GEL +R +M+GY E T T+ DGW+ TGD+
Sbjct: 366 ILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIG 425
Query: 427 YIDEDGFLFIVDRLKDLIKYKGYQVLP 453
YID+DG +FIVDR+K+LIKYKG+QV P
Sbjct: 426 YIDDDGDIFIVDRIKELIKYKGFQVAP 452
|
Length = 546 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 254 bits (652), Expect = 2e-81
Identities = 103/264 (39%), Positives = 148/264 (56%), Gaps = 4/264 (1%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFC 252
D A I Y+SGTTGR KG MLTHRN+ S A L +P FH++GL
Sbjct: 3 DPALIQYTSGTTGRPKGAMLTHRNVLNN-GYSIARRLGLTEGDRTLVPVPLFHVFGLVLG 61
Query: 253 FRAAALM-ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLET 311
A+ T V+M++FD L+ +E R+T P + +A+ + D +DLSSL T
Sbjct: 62 VLASLTAGATLVLMEKFDPGAALRLIERERITALHGVPTMFIALLEHPDFDKFDLSSLRT 121
Query: 312 VACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRW-GSTGRLSAG 370
G AP+ + + +FP + YG+TE++ +T G D G+ GR G
Sbjct: 122 GISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPG 181
Query: 371 LEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDE 430
+E KIVDP+ G+ +PPG+ GE+ +RG ++MKGY +PE T+ + DGW+ TGDL Y+DE
Sbjct: 182 VEVKIVDPDGGE-VPPGEVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYMDE 240
Query: 431 DGFLFIVDRLKDLIKYKGYQVLPL 454
DG+L IV R+KD+I G + P
Sbjct: 241 DGYLRIVGRIKDMIIRGGENIYPA 264
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 259 bits (664), Expect = 5e-81
Identities = 136/413 (32%), Positives = 197/413 (47%), Gaps = 45/413 (10%)
Query: 66 TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPA 125
G R +++E R N LA+ L+ + + K D V NS E YF++ +G +
Sbjct: 28 DGRRTTYAELDERVNRLANALRALG-VKKGDRVAVFDWNSHEYLEAYFAVPKIGAV---L 83
Query: 126 NPVNT---ESEISRQIQLSNPVIAFATSSVVHKLAKLKH-----RTILIDSPEFDSMTMS 177
+P+N EI+ + + + S V LA + RT++++
Sbjct: 84 HPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGD--GPAAPL 141
Query: 178 WNSKHELDRAKVCQS-----------DVAAIMYSSGTTGRVKGVMLTHRNL---TAAVAS 223
E + S D AA++Y+SGTTG KGV+L+HRNL + AV +
Sbjct: 142 APEVGEYEELLAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCA 201
Query: 224 SFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVT 283
S V L +P FH++ + A V+ +RFD + +L +E RVT
Sbjct: 202 WLKLSRDDVY----LVIVPMFHVHAWGLPYLALMAGAKQVIPRRFDPENLLDLIETERVT 257
Query: 284 HAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLT 343
P I + K D SSL V G A L + F KF + LVQ YG+T
Sbjct: 258 FFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKF-GIDLVQGYGMT 316
Query: 344 ESTAGVFRTVGP------DECRRWGSTGRLSAGLEAKIVDPETGDSLPP-GKE-GELSIR 395
E T+ V +V P + + S GR G+EA+IVD + GD LPP G E GE+ +R
Sbjct: 317 E-TSPVV-SVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDD-GDELPPDGGEVGEIIVR 373
Query: 396 GPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKG 448
GP +M+GY PE T A + GW+ TGD+ YIDEDG+L+I DR+KD+I G
Sbjct: 374 GPWLMQGYWNRPEAT-AETIDGGWLHTGDVGYIDEDGYLYITDRIKDVIISGG 425
|
Length = 521 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 251 bits (644), Expect = 4e-79
Identities = 125/392 (31%), Positives = 186/392 (47%), Gaps = 54/392 (13%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
++++E + LA LQ + K D + NS + I Y+++L G ++ P NP+
Sbjct: 1 VITYAELLELVDRLAGLLQEKG-VRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPM 59
Query: 129 NTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAK 188
N E+E+ + S + S ELD
Sbjct: 60 NREAELEHILNDSGARVLIVGS--------------------------------ELD--- 84
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYG 248
DVA I Y+SGTTG KG M THR + A A+S A S V+L +P FH+ G
Sbjct: 85 ----DVAVIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDS-VLLAFLPLFHVAG 139
Query: 249 LFFCFRAAALM-ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS 307
+ A T V++ R+D + +A+E +RVTH +VV + YDLS
Sbjct: 140 MQGSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIVTMVVDLLAHPRFADYDLS 199
Query: 308 SLETVACGAAPLGKDTIMAFASKFPK---VVLVQAYGLTESTAGVFRTVGPDECRRWGST 364
SL+ V G A L A A + ++ + YGLTE+ P + +
Sbjct: 200 SLKVVGGGGAALPP----AVAERLKALTGLLYEEGYGLTETHTCT--HFNPPDRPKPQCL 253
Query: 365 GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP---DGWMR 421
G G +A+++DPETG+ LPPG+EGE+ +RGP + KGY PE T+ + + + R
Sbjct: 254 GIPVFGTDARVIDPETGEELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFR 313
Query: 422 TGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
TGDL YIDE+G+ F +DR+K +I GY+V P
Sbjct: 314 TGDLGYIDEEGYFFFLDRVKRMINVSGYKVWP 345
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 243 bits (624), Expect = 4e-77
Identities = 111/264 (42%), Positives = 146/264 (55%), Gaps = 8/264 (3%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFF 251
D A I+Y+SGTTGR KGVMLTHRNL A + + V L P +H G F
Sbjct: 1 DDPALILYTSGTTGRPKGVMLTHRNLLANAVN-ALAGVDLSPGDVYLLAAPLYHAAGGLF 59
Query: 252 CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLET 311
A A T V+M +FD + +L +E RVTH + P + + + YDLSSL
Sbjct: 60 LLPALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFARYDLSSLRL 119
Query: 312 VACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDEC--RRWGSTGRLSA 369
+ GAAP+ + A F V VQ YG+TE+ T+ E R+ GS GR
Sbjct: 120 IIYGAAPMPAELKRAMIEWFG-PVFVQGYGMTETGPTT--TLLSPEDWLRKLGSVGRPVP 176
Query: 370 GLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYID 429
G+E +IVD + G LPPG+ GE+ +RGP +M GY PE T+ L DGW+ TGDL Y+D
Sbjct: 177 GVEVRIVDED-GRELPPGEVGEIVVRGPAVMAGYWNRPEATAEALR-DGWLHTGDLGYLD 234
Query: 430 EDGFLFIVDRLKDLIKYKGYQVLP 453
EDG+L+IVDR KD+I G + P
Sbjct: 235 EDGYLYIVDRKKDMIISGGENIYP 258
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 225 bits (575), Expect = 6e-70
Identities = 104/263 (39%), Positives = 145/263 (55%), Gaps = 6/263 (2%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFC 252
D A I+Y+SGTTG+ KGV+L+HRNL A + + V+L +P FH+ G
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGD-VLLSVLPLFHVVGGGSG 59
Query: 253 -FRAAALMETAVVMQRFD-LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLE 310
A T V+ + F L+ +E++RVT P + A++K GYDLSSL
Sbjct: 60 LLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGYDLSSLR 119
Query: 311 TVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAG 370
+ G PL + + + P +++ YGLTE T+ V T E ++ G+ GR G
Sbjct: 120 LLISGGEPLSPELL-ERFEERPGAPILEGYGLTE-TSVVTSTNPDSELKKPGTVGRPVPG 177
Query: 371 LEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDE 430
+E ++VD E LPPG+ GEL +RGP +MKGY P T+A DGW RTGDL Y+DE
Sbjct: 178 VEVRVVDEEGKP-LPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDE 236
Query: 431 DGFLFIVDRLKDLIKYKGYQVLP 453
+G+L+I R KDLIK G V P
Sbjct: 237 EGYLYITGRSKDLIKVGGENVYP 259
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 212 bits (541), Expect = 7e-64
Identities = 120/386 (31%), Positives = 169/386 (43%), Gaps = 54/386 (13%)
Query: 69 RVSFSEFTRRTNSLASYL--QNVTRLSKNDT-AFVLSTNSIEIPILYFSLLSLGVIISPA 125
R+++ E + LA+ L V D AF L N E ++Y + +G +I+P
Sbjct: 1 RLTYGELDDAADRLAAALAELGVRP---GDVVAFQL-PNWWEFVVVYLACARIGAVINPI 56
Query: 126 NPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELD 185
P+ E E+ ++ + + F R FD M
Sbjct: 57 VPIYRERELGFILRQARARVLFVPDEF---------RG-------FDYAAMP-------- 92
Query: 186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS---FASSPKRVSPAVMLFTMP 242
DVA ++Y+SGTTG KGVM TH L A V S +P V M +
Sbjct: 93 ------DDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTPDDVVL--MPSPLA 144
Query: 243 YFHI----YGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKG 298
HI YGL A T V+ R+D L+ + E VT P + +
Sbjct: 145 --HITGFLYGLELPLLLGA---TVVLQDRWDPARALELIREHGVTFTMGATPFLADLLAA 199
Query: 299 GSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDEC 358
G DL SL CG AP+ ++ A V V+AYG+TE T +
Sbjct: 200 ADAAGPDLPSLRVFLCGGAPVPRELARRAAEALGAKV-VRAYGMTEVPLVTVGTPDDPDD 258
Query: 359 RRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG 418
+R + GR G+E +IVD + G+ +PPG+EGEL +RGP + GY+ P+ T A DG
Sbjct: 259 KRAATDGRPVPGVEVRIVDDD-GNDVPPGEEGELQVRGPQLFLGYLDPPDNTEAFT-DDG 316
Query: 419 WMRTGDLCYIDEDGFLFIVDRLKDLI 444
W RTGDL +D DG+L I R KD+I
Sbjct: 317 WFRTGDLGRLDADGYLRITGRKKDII 342
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 213 bits (544), Expect = 3e-63
Identities = 126/429 (29%), Positives = 195/429 (45%), Gaps = 52/429 (12%)
Query: 67 GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
G +S+ E LA YLQ + K D + NS + I Y+++L ++ P N
Sbjct: 33 GRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVN 92
Query: 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTIL-----------------IDSP 169
P+N E E++ + S +A S + K+A L I P
Sbjct: 93 PMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVP 152
Query: 170 EF-----------DSMTMSWN----SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTH 214
+ ++W + D+A + Y+SGTTG KG M TH
Sbjct: 153 AWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTH 212
Query: 215 RNLTAAVASS---FASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALM-ETAVVMQRFDL 270
R + A S S+P+ +V+L +P FH+ G+ A T V+M R+D
Sbjct: 213 RTVMANAVGSVLWSNSTPE----SVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDR 268
Query: 271 KMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASK 330
+ + +E +RVTH P +VV DLSSL + G A + + A A +
Sbjct: 269 EAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMPE----AVAER 324
Query: 331 FPK---VVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPG 387
+ + V+ YGLTE+ A P + + G + G++A+++DPET + LPPG
Sbjct: 325 LKELTGLDYVEGYGLTETMA--QTHSNPPDRPKLQCLGIPTFGVDARVIDPETLEELPPG 382
Query: 388 KEGELSIRGPTIMKGYVGEPEVTSATLLP-DG--WMRTGDLCYIDEDGFLFIVDRLKDLI 444
+ GE+ + GP + KGY PE T+ + DG + RTGDL +DE+G+ FI DRLK +I
Sbjct: 383 EVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMI 442
Query: 445 KYKGYQVLP 453
G++V P
Sbjct: 443 NASGFKVWP 451
|
Length = 546 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 204 bits (522), Expect = 9e-61
Identities = 105/391 (26%), Positives = 163/391 (41%), Gaps = 71/391 (18%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
++++E R LA+ L + + D +L+ N E I ++L+ G + P P
Sbjct: 5 TITWAELAERVRRLAAGLIALG-VKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPT 63
Query: 129 NTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAK 188
++ E++ + S + F D P+
Sbjct: 64 SSPEEVAYILNDSGARVVFVE-----------------DKPD------------------ 88
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYG 248
D+A ++Y+SGTTG KGVMLTHRNL A A+ P V+ F +P H++
Sbjct: 89 ----DLATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLSPGDRVLSF-LPLAHVFE 143
Query: 249 LFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTP--------PIVVAMSKGGS 300
L A V + +L+ + E R T P I ++ G
Sbjct: 144 QRLGE-YLPLSSGARVNFAESPETLLEDLREVRPTVFFAVPRVWEKIYAGIEAKVAAAGP 202
Query: 301 TDG--YD----LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354
+ L G APL + + F + + +++ YGLTE++ TV
Sbjct: 203 LKRKLFRWALGGGRLRFAVSGGAPLPPEVLEFFRAL--GIPILEGYGLTETSGVA--TVN 258
Query: 355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL 414
R G+ G+ G+E +I + +GE+ +RGP +MKGY PE T+ L
Sbjct: 259 RPGDIRIGTVGKPLPGVEVRIAE-----------DGEILVRGPNVMKGYYKNPEATAEAL 307
Query: 415 LPDGWMRTGDLCYIDEDGFLFIVDRLKDLIK 445
DGW+ TGD+ +DEDGFL I DR KDLI
Sbjct: 308 DEDGWLHTGDIGRLDEDGFLVITDRKKDLIV 338
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 205 bits (524), Expect = 1e-60
Identities = 125/410 (30%), Positives = 195/410 (47%), Gaps = 33/410 (8%)
Query: 67 GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
R++++E R A+ L + + K D + + NS I L G ++ P N
Sbjct: 28 DQRLTYAELNARVRRAAAALAALG-IGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLN 86
Query: 127 PVNTESEISRQIQLSNPVIAFATS-------SVVHKLAKLKHRTIL--IDSPEFDSMTMS 177
T E + + + F S +L L+H I + +
Sbjct: 87 TRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMKT 146
Query: 178 W----NSKHELDRA-KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRV 232
+ + +RA +V DVA I+++SGTTGR KG MLTHR L + A+ +A
Sbjct: 147 FTDFLAAGDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSN-AADWAEYLGLT 205
Query: 233 SPAVMLFTMPYFHIYGLFFCFRA---AALME--TAVVMQRFDLKMMLKAVEEFRVTHAAV 287
L P+FH+ F ++A A LM T + + FD + + +E R+T
Sbjct: 206 EGDRYLAANPFFHV----FGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPG 261
Query: 288 TPPIVVAM--SKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES 345
P + ++ S DLSSL GAA + + F S+ +++ YGL+E+
Sbjct: 262 PPTMYNSLLQHPDRSA--EDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEA 319
Query: 346 TAGVFRTVGPDECRRW--GSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGY 403
+GV D+ R+ G+ G AG+E KIV+ G+ +P G+ GEL +RGP +MKGY
Sbjct: 320 -SGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNEL-GEEVPVGEVGELLVRGPNVMKGY 377
Query: 404 VGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
+PE T+A + DGW+ TGDL +DE+G+L+IVDR KD+ G+ V P
Sbjct: 378 YDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYP 427
|
Length = 513 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 194 bits (496), Expect = 3e-58
Identities = 98/273 (35%), Positives = 140/273 (51%), Gaps = 23/273 (8%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAA---VASSFASSPKRVSPAVMLFTMPYFHIYG 248
D A I+++SGTTGR KGV LTH+NL A+ +A S +P VM P FHI+G
Sbjct: 2 DDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDRCLNVM----PLFHIHG 57
Query: 249 LFFCFRAAALMET------AVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD 302
L +L+ T V +F + ++RVT + P I + K +
Sbjct: 58 L-----IVSLLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKPN 112
Query: 303 GYD-LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRW 361
L + +APL + +F V +++AYG+TE+ + P R+
Sbjct: 113 PGKPPPRLRFIRSASAPLPPAVLDRLEKRF-GVPVLEAYGMTEAAHQIASNPLPPLVRKP 171
Query: 362 GSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMR 421
GS GR AG+E I+D + G LPPG+EGE+ IRGP + GY+ PE DGW R
Sbjct: 172 GSVGR-PAGVEVAILDDD-GRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAF-RDGWFR 228
Query: 422 TGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPL 454
TGDL Y+DEDG+LF+ R+K+LI G ++ P
Sbjct: 229 TGDLGYLDEDGYLFLTGRIKELINRGGEKISPR 261
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 201 bits (512), Expect = 5e-58
Identities = 112/451 (24%), Positives = 179/451 (39%), Gaps = 95/451 (21%)
Query: 70 VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
+++ E R +LAS L + + D + + N E I ++L+LG + P +
Sbjct: 46 ITYRELYERVRALASGLLS-LGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYSTS 104
Query: 130 TESEISRQIQLSNPVIAFA-TSSVVHKLAKLKHRTILI-----------DSPEFDSMTMS 177
T +++ + S + F ++ + + + ++ E ++ +
Sbjct: 105 TPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLE 164
Query: 178 WNSK-----HELDRAKVCQS-------DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF 225
+D A + D+A I+Y+SGTTG KGVMLTHRNL A VA
Sbjct: 165 VFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGID 224
Query: 226 ASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHA 285
P +L +P HI+ F AL V+ + D + +L+ ++E R T
Sbjct: 225 EVLPPIGPGDRVLSFLPLAHIFERAFEG-GLALYGGVTVLFKEDPRTLLEDLKEVRPTVM 283
Query: 286 AVTPPI------------------------------VVAMSKGGSTDGYDL--------- 306
P + +S+ G
Sbjct: 284 IGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLV 343
Query: 307 ---------SSLETVACGAAPLGKDTIMAFASKFPKVVLV---QAYGLTESTAGVFRTVG 354
+ G APL + + F S + + + YGLTE++A V +V
Sbjct: 344 FRKIRDALGGRIRYALSGGAPLSPELLHFFRS-----LGIPILEGYGLTETSAVV--SVN 396
Query: 355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL 414
P + G+ G+ G+E KI D +GE+ +RGP +MKGY PE T+
Sbjct: 397 PPDRFVLGTVGKPLPGIEVKIAD-----------DGEILVRGPNVMKGYYKNPEATAEAF 445
Query: 415 LPDGWMRTGDLCYIDEDGFLFIVDRLKDLIK 445
DGW RTGDL +DEDG+L I R K+LIK
Sbjct: 446 TEDGWFRTGDLGELDEDGYLVITGRKKELIK 476
|
Length = 613 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 196 bits (499), Expect = 1e-56
Identities = 136/427 (31%), Positives = 210/427 (49%), Gaps = 47/427 (11%)
Query: 67 GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
G ++FS F + A+YLQ + + K D ++ N + I Y+ L G I+ N
Sbjct: 47 GKDITFSVFHDKVKRFANYLQKLG-VEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTN 105
Query: 127 PVNTESEISRQIQLSNPVI------AFATSSVVHKLAKLKH------------------- 161
P+ TE E+ Q+ S + F + V K++H
Sbjct: 106 PLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYP 165
Query: 162 -----RTILIDSPEFDSMTMSWNS-KHELDRA--KVC--QSDVAAIMYSSGTTGRVKGVM 211
++ L+ WNS + E++ C ++D+A + Y+ GTTG KGVM
Sbjct: 166 FVQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVM 225
Query: 212 LTHRNLTAAVASSFASSPKRVS-PAVMLFTMPYFHIYGLFFCFRAAALM-ETAVVMQRFD 269
LTH+NL + V+L +P+FH+YG+ + + V++ +FD
Sbjct: 226 LTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFD 285
Query: 270 LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFAS 329
+KM+ +A+++ +VT P I +A+ YD+SS+ G+APL +
Sbjct: 286 MKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAPLPVEV----QE 341
Query: 330 KFPKVV---LVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPP 386
KF V LV+ YGLTES+ V + E R GS G EA I+ ETG++LPP
Sbjct: 342 KFETVTGGKLVEGYGLTESSP-VTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALPP 400
Query: 387 GKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKY 446
G+ GE+ ++GP IMKGY +PE T+A +L DGW+ TGD+ Y+DEDGF ++ DR KD+I
Sbjct: 401 GEIGEIVVKGPQIMKGYWNKPEETAA-VLQDGWLHTGDVGYMDEDGFFYVKDRKKDMIVA 459
Query: 447 KGYQVLP 453
G+ V P
Sbjct: 460 SGFNVYP 466
|
Length = 563 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 190 bits (485), Expect = 1e-56
Identities = 96/273 (35%), Positives = 136/273 (49%), Gaps = 17/273 (6%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYG--- 248
D+AAI+Y+SG+TG KGVML+HRNLTA A S A + +L +P+ YG
Sbjct: 2 DDLAAIIYTSGSTGEPKGVMLSHRNLTAG-ARSIAQYLELTEDDRILAVLPFSFDYGLSQ 60
Query: 249 LFFCFRAAALMETAVVMQRFDL-KMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS 307
L FR T V+ RF + +LK + + R+T A P + + D
Sbjct: 61 LLTAFRVGG---TLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLAREDFP 117
Query: 308 SLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDEC-RRWGSTGR 366
SL + L TI+ FP L YGLTE+ + + P+E RR S G+
Sbjct: 118 SLRYLTNAGGALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTY--LPPEELDRRPDSIGK 175
Query: 367 LSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVT-----SATLLPDGWMR 421
+E +VD + G+ PG+ GEL RG +MKGY +PE T L + +
Sbjct: 176 AIPNVELWVVDED-GNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLY 234
Query: 422 TGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPL 454
TGDL +DE+G+L+ V R D+IK +GY+V P
Sbjct: 235 TGDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPT 267
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 189 bits (483), Expect = 6e-55
Identities = 107/383 (27%), Positives = 156/383 (40%), Gaps = 39/383 (10%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
R+++ E + LA+ L + + D V N E ILYF+L LG I A P
Sbjct: 40 RLTYRELDAAVDRLAAGLLALG-IGPGDRVLVQLPNVAEFVILYFALFKLGAIPVLALPA 98
Query: 129 NTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAK 188
+ EI + S A+ + FD ++ EL
Sbjct: 99 HRAHEIGHFARQSEAK-AYIIADRFSG---------------FDYAALARELLEEL---- 138
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSP-AVMLFTMPYFHIY 247
DVA S GTTG K + TH + + +S + + P V L +P H +
Sbjct: 139 ---PDVALFQLSGGTTGLPKLIPRTHNDYLYSARASAEAC--GLDPGTVYLAVLPAAHNF 193
Query: 248 -----GLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD 302
GL A T V+ + +E +VTH A+ P ++ + D
Sbjct: 194 TLSSPGLLGALLAGG---TVVLHHPPSPDVAFPLIEREKVTHTALVPALLNLWLEAAEWD 250
Query: 303 GYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWG 362
DLSSL + G APL + + L Q +G+ E R P +
Sbjct: 251 QADLSSLRVIQVGGAPLSPELARRVEERL-GCPLQQVFGMAEGLVNYTRLDDPPDVIM-R 308
Query: 363 STGR-LSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMR 421
+ GR +S E +IVD + +PPG+ GEL RGP ++GY PE + DG+ R
Sbjct: 309 TQGRPISPADEIRIVDDQGEP-VPPGEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYR 367
Query: 422 TGDLCYIDEDGFLFIVDRLKDLI 444
TGDL ID DG+ +V R+KD I
Sbjct: 368 TGDLVRIDADGYYRVVGRIKDQI 390
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 187 bits (478), Expect = 9e-55
Identities = 110/385 (28%), Positives = 157/385 (40%), Gaps = 60/385 (15%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
R +++E R N LA+ L + + D ++ N E +F+L LG + P N
Sbjct: 3 RYTYAELAERVNRLAAGLLALG-VRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTA 61
Query: 129 NTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAK 188
E++ + S +
Sbjct: 62 LRGEELAHILDHSGARLIVV---------------------------------------- 81
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYG 248
D AAI+Y+SGTTG KGV+LTH L A + R V+L +P FHI
Sbjct: 82 ----DTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLR-PDDVLLTPLPLFHINA 136
Query: 249 LFFCFRAAALME--TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDL 306
+ AAL+ T V++ RF V + T + + + K D
Sbjct: 137 QAYSV-YAALLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAMAAILMK--QPPSPDD 193
Query: 307 SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGR 366
APL AF +F V LV+ YG+TE+ + P + GS GR
Sbjct: 194 RDHPLRFVFGAPLPAAIWPAFEERF-GVKLVEGYGMTETGVPII---APGDPAPPGSCGR 249
Query: 367 LSAGLEAKIVDPETGDSLPPGKEGELSIR---GPTIMKGYVGEPEVTSATLLPDGWMRTG 423
G+E +IVD + G +PPG+ GEL +R + KGY G PE T+ +GW TG
Sbjct: 250 PRPGVEVRIVDED-GREVPPGEVGELVVRPRRPWAMFKGYYGMPEATAKAW-RNGWFHTG 307
Query: 424 DLCYIDEDGFLFIVDRLKDLIKYKG 448
D DEDGFL+ VDR KD I+ +G
Sbjct: 308 DRGRRDEDGFLYFVDRKKDAIRRRG 332
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 1e-52
Identities = 111/413 (26%), Positives = 171/413 (41%), Gaps = 77/413 (18%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
D +AL++ G +++ E R+ LA L + L D VL+ S E +LY ++
Sbjct: 1 DRIALVDG--GRSLTYGELDARSGRLAKALLALGLL-PGDRVAVLAPKSAEYVVLYLAIW 57
Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTM 176
G + P NP +E++ + S P +
Sbjct: 58 RAGGVAVPLNPSYPAAELAYILSDSQPSLLV----------------------------- 88
Query: 177 SWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS-----SFASSPKR 231
D A I+Y+SGTTGR KGV+LTH NL A + + +S
Sbjct: 89 ----------------DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASD-- 130
Query: 232 VSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPP 290
V+L +P H++GLF +V RFD + R+T P
Sbjct: 131 ----VLLHALPLHHVHGLFNALHCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPT 186
Query: 291 IVVAMSKGGSTDGYDLSSLETVAC--------GAAPLGKDTIMAFASKFPKVVLVQAYGL 342
I + + Y+ A G+A L + + + +L + YG+
Sbjct: 187 IYTRL-----LEHYEFDDAAAAAARNLRLFVSGSAALPVPVLERWEERTGHTLL-ERYGM 240
Query: 343 TESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
TE G+ + D RR G+ G G+E +IVD + G+ L G+ GE+ +RGP +
Sbjct: 241 TE--TGMALSNPLDGERRPGTVGLPLPGVEVRIVDEDGGEPLAAGEVGEIQVRGPNVFSE 298
Query: 403 YVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDL-IKYKGYQVLPL 454
Y +PE T+ DGW +TGD+ +DEDG+ I+ R D IK GY+V L
Sbjct: 299 YWNKPEATAEAFTEDGWFKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSAL 351
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 177 bits (452), Expect = 8e-50
Identities = 122/386 (31%), Positives = 180/386 (46%), Gaps = 48/386 (12%)
Query: 112 YFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFA---TSSVVHKLAK-LKHRTI--- 164
++++L LG ++ NP+ T E+ + +A + V +L + TI
Sbjct: 99 FYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSV 158
Query: 165 -LIDS-------------PEFDSM----------TMSWNS---------KHELDRAKVCQ 191
+I + P T+ W + ++ +
Sbjct: 159 NMIAAMPLLQRLALRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTP 218
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK-RVSPAVMLFTMPYFHIYGLF 250
DVA I+Y+SGTTG+ KG LTHRNL A A A P P +L +P FH YGL
Sbjct: 219 DDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPMFHAYGLT 278
Query: 251 FCFRAAALM-ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSL 309
C A + V++ D+ ++L A+++ T PP+ +++ G DLS +
Sbjct: 279 LCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGV 338
Query: 310 ETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE-STAGVFRTVGPDECRRWGSTGRLS 368
GA L T+ K +LV+ YGLTE S V + D RR G G
Sbjct: 339 RNAFSGAMALPVSTV-ELWEKLTGGLLVEGYGLTETSPIIVGNPMSDD--RRPGYVGVPF 395
Query: 369 AGLEAKIVDPETGD-SLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCY 427
E +IVDPE D ++P G+EGEL +RGP + KGY PE T+ + L DGW RTGD+
Sbjct: 396 PDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFL-DGWFRTGDVVV 454
Query: 428 IDEDGFLFIVDRLKDLIKYKGYQVLP 453
++EDGF+ IVDR+K+LI G+ V P
Sbjct: 455 MEEDGFIRIVDRIKELIITGGFNVYP 480
|
Length = 573 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 175 bits (447), Expect = 2e-49
Identities = 97/429 (22%), Positives = 168/429 (39%), Gaps = 40/429 (9%)
Query: 51 LPWRDDDTVALI---NSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIE 107
L D A+I +++ + R LA+ L++ K D + NS E
Sbjct: 19 LEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKD-LGGVKGDRVAIYMPNSPE 77
Query: 108 IPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSS---------VVHKLAK 158
I + +G I + +P + ++ +I P + A ++
Sbjct: 78 AVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADA 137
Query: 159 LKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLT 218
+ +++ + + + + D ++Y+SGTTG+ KG++ +H
Sbjct: 138 VLSSVVVVPRLGLWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYL 197
Query: 219 AAVASSFASSPKRV---SPAVMLFTMP-----YFHIYGLFFCFRAAALMETAVVMQR--- 267
+ K P + Y Y +F + A T V+
Sbjct: 198 VEHRLTA----KFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGA---TTVLYDGRPF 250
Query: 268 FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAF 327
+ + + +A+E+++VT +P + + K G + YDLSSL + PL + F
Sbjct: 251 YSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEWF 310
Query: 328 ASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPG 387
S V ++ YG TE+ G G + GS+G G + VD E G+ +PPG
Sbjct: 311 YSAL-GVWILDIYGQTETGMGFI--AGRPPVKN-GSSGLPLPGYAVRRVDDE-GNPVPPG 365
Query: 388 KEGELSIRGPT--IMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIK 445
GEL +R P + Y +PE W RTGD DEDG+ ++ R D+IK
Sbjct: 366 -VGELVVRLPWPGMALTYWNDPERYKEAYF-GRWYRTGDWAERDEDGYFWLHGRSDDVIK 423
Query: 446 YKGYQVLPL 454
G ++ PL
Sbjct: 424 VSGKRIGPL 432
|
Length = 528 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 173 bits (439), Expect = 1e-48
Identities = 110/406 (27%), Positives = 194/406 (47%), Gaps = 15/406 (3%)
Query: 53 WRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILY 112
+ D +A+I + ++ + + +A+YL + K + +LS NS+E +L
Sbjct: 13 YLHPDRIAIITEEEEM--TYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLL 70
Query: 113 FSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFD 172
F++ + I P N TE+E+ Q++ S + F + + ++ + +
Sbjct: 71 FAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYV--QRVIS 128
Query: 173 SMTMSWNSKHELDRA-KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLT-AAVASSFASSPK 230
++ ++D + +S I Y+SGTTG+ KG +LT N+ A+ ++FA
Sbjct: 129 ITSLKEIEDRKIDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLT 188
Query: 231 RVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTP 289
+++L +P FHI G+ F F +V ++F+ L +E+ +VT P
Sbjct: 189 MHDRSIVL--LPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVP 246
Query: 290 PIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASK-FPKVVLVQAYGLTESTAG 348
I A+ + +L S+ G AP ++ + F + F Q +G+TE++
Sbjct: 247 TIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDRGFL---FGQGFGMTETSPT 303
Query: 349 VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPE 408
VF D R+ GS G+ + +++D + G+ GEL IRGP +MK Y P+
Sbjct: 304 VFMLSEEDARRKVGSIGKPVLFCDYELIDENKNK-VEVGEVGELLIRGPNVMKEYWNRPD 362
Query: 409 VTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPL 454
T T+ DGW+ TGDL +DEDGF++IV R K++I G + PL
Sbjct: 363 ATEETI-QDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPL 407
|
Length = 496 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 3e-48
Identities = 93/264 (35%), Positives = 135/264 (51%), Gaps = 15/264 (5%)
Query: 184 LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSPAVMLFT 240
L A D A I+++SG+ G KGV+L+HRNL A +A+ + + V +L
Sbjct: 137 LFLAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDV----LLGA 192
Query: 241 MPYFHIYGLFFCFRAAALMETAVVMQR--FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKG 298
+P FH +GL L VV D K + + + +++ T TP + ++
Sbjct: 193 LPLFHAFGLTVTLLLPLLTGLRVVYYPNPLDAKKIAELIRDYKATILCGTPTFLRGYAR- 251
Query: 299 GSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDEC 358
+ D SSL V GA L + T F KF + +++ YG TE + + +V
Sbjct: 252 -NAHPEDFSSLRLVVAGAEKLPEATRELFEEKF-GIRILEGYGATECSPVI--SVNTPMG 307
Query: 359 RRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSA-TLLPD 417
+ G+ GR G+E +IV PET + LP G+ G L +RGP +M GY+ E TS +L D
Sbjct: 308 NKPGTVGRPLPGIEVRIVSPETHEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGD 367
Query: 418 GWMRTGDLCYIDEDGFLFIVDRLK 441
GW TGD+ IDEDGFL IV RLK
Sbjct: 368 GWYDTGDIGKIDEDGFLTIVGRLK 391
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 169 bits (431), Expect = 4e-48
Identities = 103/379 (27%), Positives = 170/379 (44%), Gaps = 68/379 (17%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
++F E +R + LA L + + + D +L+ NSIE +L+ +LL LG ++ P NP
Sbjct: 1 SLTFQELDQRVSQLAEQLAALG-VRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPR 59
Query: 129 NTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAK 188
+ E+ +Q L +
Sbjct: 60 LPQEELQQQ----------------------------------------------LADLQ 73
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVM-LFTMPYFHIY 247
A I+++SG+TG+ K V+ T N A+ S + ++P L ++P FH+
Sbjct: 74 PDLDRPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLG--LTPDDNWLLSLPLFHVS 131
Query: 248 GLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS 307
GL R+ V+ +FD + + +A+E VTH ++ P + + + S LS
Sbjct: 132 GLAIVMRSLLAGGALVLPDKFDAEAIAEALENHGVTHISLVPTQLQRLLE--SLGARWLS 189
Query: 308 SLETVACGAAPLGKDTI-MAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRR-WGSTG 365
SL V G AP+ + A P L YG+TE+ + V T+ PD+ GS G
Sbjct: 190 SLRAVLLGGAPIPPSLLEQARQRGIP---LYPTYGMTETASQVA-TLKPDDFLAKLGSVG 245
Query: 366 RLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDL 425
+ G E +IV+P+ GE+ +RGP++ GY+ + +T DGW TGDL
Sbjct: 246 KPLPGRELRIVNPQD---------GEILVRGPSLFLGYLPQGGLTPPL-DEDGWFHTGDL 295
Query: 426 CYIDEDGFLFIVDRLKDLI 444
Y+D +G+L+++ R DLI
Sbjct: 296 GYLDAEGYLYVLGRRDDLI 314
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 5e-48
Identities = 98/277 (35%), Positives = 138/277 (49%), Gaps = 19/277 (6%)
Query: 186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPY 243
A D+A + Y+ GTTG+ KGVM THR++ A P L P
Sbjct: 162 VAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPR---FLMCTPL 218
Query: 244 FHIYGLFFCFRAAALME--TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST 301
H G FF L+ T +V+ +FD +L+A+EE R+T + P ++ A+
Sbjct: 219 SHAGGAFF---LPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDL 275
Query: 302 DGYDLSSLETVACGAAPLGKDTIMAFASKF-PKVVLVQAYGLTE--STAGVFRTV--GPD 356
DLSSLETV GA+P+ + +F P + Q YG TE R PD
Sbjct: 276 RTRDLSSLETVYYGASPMSPVRLAEAIERFGP--IFAQYYGQTEAPMVITYLRKRDHDPD 333
Query: 357 ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP 416
+ +R S GR + GL ++D + G + G+ GE+ +RGP +M GY PE T+
Sbjct: 334 DPKRLTSCGRPTPGLRVALLDED-GREVAQGEVGEICVRGPLVMDGYWNRPEETAEAF-R 391
Query: 417 DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
DGW+ TGD+ DEDGF +IVDR KD+I G+ V P
Sbjct: 392 DGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFP 428
|
Length = 524 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 6e-48
Identities = 120/438 (27%), Positives = 176/438 (40%), Gaps = 80/438 (18%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
++++E RR ++A+ LQ + D +L+ ++ +F L G I PA P
Sbjct: 23 TLTYAELDRRARAIAARLQ--ALGAPGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPP 80
Query: 129 NTESEISRQIQL----SNPVIAFATSSVVHKLAK-------LKHRTILIDSPEFDSMTMS 177
++ + TS+V+ L L I D +
Sbjct: 81 RRLGRHLARLAAILADAGARAVLTTSAVLAALRAALAAPAALLLLLIAADDLAALA---- 136
Query: 178 WNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSP 234
+ D+A + Y+SG+TG KGVM+TH NL A A+A +F P
Sbjct: 137 ---AADWRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAIARAFGLDP----D 189
Query: 235 AVMLFTMPYFH----IYGLFFCF---RAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAV 287
V + +P +H I GL LM ++R L+A+ +R T +
Sbjct: 190 DVGVSWLPLYHDMGLIGGLLQPLYAGFPVVLMSPLAFLRRPLR--WLEAISRYRATVSGA 247
Query: 288 TPP----IVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKF------PKVVLV 337
P + V + G DLSS GA P+ DT+ FA +F P+ L
Sbjct: 248 -PNFAYDLCVRRVRDEQLAGLDLSSWRVAFNGAEPVRADTLERFAERFAPAGFRPEAFL- 305
Query: 338 QAYGLTESTAGV--------FRTVGPDECRRWG-----------------STGRLSAGLE 372
YGL E+T V + D S GR G E
Sbjct: 306 PCYGLAEATLAVSGGPPGAGPVVLRVDRDALARGGAAVAAADGAAARELVSCGRPLPGHE 365
Query: 373 AKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLL------PDGWMRTGDLC 426
+IVDPET LP G+ GE+ +RGP++ GY PE T+ T GW+RTGDL
Sbjct: 366 VRIVDPETRRPLPDGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLG 425
Query: 427 YIDEDGFLFIVDRLKDLI 444
++ DG L++ RLKDLI
Sbjct: 426 FLH-DGELYVTGRLKDLI 442
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 171 bits (434), Expect = 2e-47
Identities = 108/403 (26%), Positives = 181/403 (44%), Gaps = 36/403 (8%)
Query: 66 TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPA 125
G ++S + LA++L + AF L E I+Y + L +G + P
Sbjct: 46 HGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWC-EFTIIYLACLKVGAVSVPL 104
Query: 126 NPVNTESEISRQIQLSNPVIAFATS------------SVVHKLAKLKHRTILID--SPEF 171
P E+E+ + + FA + + ++L +L+ + +D +P
Sbjct: 105 LPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQ-IVGVDKLAPAT 163
Query: 172 DSMTMSWNSKHELDRAKVCQS-------DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS 224
S+++S + + + ++AA++++SGT G KGVMLTH N+ A+ +
Sbjct: 164 SSLSLS----QIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILAS-ERA 218
Query: 225 FASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALM-ETAVVMQRFDLKMMLKAVEEFRVT 283
+ + V + P H G A L+ +V++ F L +E+ R T
Sbjct: 219 YCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCT 278
Query: 284 HAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLT 343
P + + DLS+L CG + K +A + + L+ YG T
Sbjct: 279 CMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKK--VARECQQRGIKLLSVYGST 336
Query: 344 ESTAGVFRTVGPDECRRW--GSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMK 401
ES+ V D+ + G +AG+E K+VD E +LPPG EGE + RGP +
Sbjct: 337 ESSPHAV--VNLDDPLSRFMHTDGYAAAGVEIKVVD-EARKTLPPGCEGEEASRGPNVFM 393
Query: 402 GYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLI 444
GY+ EPE+T+ L +GW +GDLC +DE G++ I R KD+I
Sbjct: 394 GYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDII 436
|
Length = 547 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 168 bits (429), Expect = 7e-47
Identities = 118/418 (28%), Positives = 194/418 (46%), Gaps = 59/418 (14%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRL--SKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
R ++++F RR LA+ L+ L D L+ N+ LYF++ +G ++ N
Sbjct: 25 RYTYADFYRRVRRLANALE---SLGVKPGDRVATLAWNTHRHLELYFAVPGMGAVLHTLN 81
Query: 127 PVNTESEISRQIQLSN-----------PVIAFATSSVVHKLAKLKHRTILIDSPEFDSMT 175
P + +I+ I + P++ ++ +L +K + D+ ++
Sbjct: 82 PRLSPEQIAYIINHAEDKVIFVDDDFLPLLE----AIAPRLPTVKAVVVYDDADMPETSL 137
Query: 176 MSWNSKHELDRA--------KVCQSDVAAIMYSSGTTGRVKGVMLTHRN-----LTAAVA 222
+ + EL ++ ++ A + Y+SGTTG KGV+ +HR+ L +A+
Sbjct: 138 PNVYAYEELLEEESPEYEWPELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASALP 197
Query: 223 SSFASSPKRVSPAVMLFTMPYFHI--YGLFFCFRAAALMETAVVM--QRFDLKMMLKAVE 278
S S V+ P FH+ +GL + AA ++ +V+ + D +L +E
Sbjct: 198 DSLGLSESDT---VLPVV-PMFHVNAWGLPY---AATMVGAKLVLPGRYLDPASLLDLIE 250
Query: 279 EFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ 338
E +VT +A P I + + +G DLSSL V G + L + I + +V+
Sbjct: 251 EEKVTVSAGVPTIWLGLLNYLEANGKDLSSLRRVVVGGSALPRSLIEKLEERGVEVI--H 308
Query: 339 AYGLTE----STAGVFRT--VGPDECRRWG---STGRLSAGLEAKIVDPETGDSLPP-GK 388
A+G+TE T + V E + GR G+E +IVD E + LP GK
Sbjct: 309 AWGMTETSPLGTVSRLKPHLVDLPEEEKLELRAKQGRPVPGVELRIVDDEGNE-LPWDGK 367
Query: 389 -EGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIK 445
GEL +RGP + Y +PE + L DGW RTGD+ IDEDG++ I DR KD+IK
Sbjct: 368 TVGELVVRGPWVTGSYYKDPE-KTEELTRDGWFRTGDVAVIDEDGYIQITDRAKDVIK 424
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 6e-46
Identities = 123/420 (29%), Positives = 192/420 (45%), Gaps = 44/420 (10%)
Query: 46 SLRATLPW---RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLS 102
+L A++ + R D AL+ +S++EF +R A L + + D +L
Sbjct: 3 NLSASIAFHARRTPDRAALV--YRDQEISYAEFHQRILQAAGMLH-ARGIGQGDVVALLM 59
Query: 103 TNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKL------ 156
NS L F+ LG + P N +L+ +A+ KL
Sbjct: 60 KNSAAFLELAFAASYLGAVFLPIN-----------YRLAADEVAYILGDAGAKLLLVDEE 108
Query: 157 ----AKLKHRTILIDSP-EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVM 211
L+ I+ID+ + DS ++ +A V +D+ +MY+SGTT R KGVM
Sbjct: 109 FDAIVALETPKIVIDAAAQADSRRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVM 168
Query: 212 LTHRNLT-----AAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALME--TAVV 264
++ NL +A +S + +L P +H+ G F A L T +
Sbjct: 169 HSYGNLHWKSIDHVIALGLTASER------LLVVGPLYHV-GAFDLPGIAVLWVGGTLRI 221
Query: 265 MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTI 324
+ FD + +L A+E R+T A + P ++ + D +DL SL G + I
Sbjct: 222 HREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRI 281
Query: 325 MAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSL 384
F F + + AYGLTE+ +G E + GSTGR A +E +I D G L
Sbjct: 282 RDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD-GAGRWL 340
Query: 385 PPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLI 444
PP +GE+ +RGP + KGY +PE T+ W R+GD+ Y+DE+GFL++ DR KD+I
Sbjct: 341 PPNMKGEICMRGPKVTKGYWKDPEKTAEAFY-GDWFRSGDVGYLDEEGFLYLTDRKKDMI 399
|
Length = 497 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 166 bits (424), Expect = 7e-46
Identities = 134/450 (29%), Positives = 198/450 (44%), Gaps = 83/450 (18%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTR-LSKNDTAFVLSTNSIEIPILY 112
R D AL+ GLR ++ EF ++LA L + + K D + + N E +
Sbjct: 28 RYPDREALVYRDQGLRWTYREFNEEVDALAKGL--LALGIEKGDRVGIWAPNVPEWVLTQ 85
Query: 113 FSLLSLGVIISPANPVNTESEIS---RQIQLSNPVIA--FATSSVV-------------- 153
F+ +G I+ NP SE+ Q + A F S V
Sbjct: 86 FATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCE 145
Query: 154 ------HKLAKLKHRTILIDSPEFDSMTMSWN---------SKHELDR--AKVCQSDVAA 196
+L +L+ R I + + M ++++ EL A + D
Sbjct: 146 PGQLQSARLPELR-RVIFLGDEKHPGM-LNFDELLALGRAVDDAELAARQATLDPDDPIN 203
Query: 197 IMYSSGTTGRVKGVMLTHRNLT---AAVASSFASSPK-RVSPAVMLFTMPYFHIYGLFF- 251
I Y+SGTTG KG LTHRN+ + + + + R+ V P +H +G+
Sbjct: 204 IQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIPV-----PLYHCFGMVLG 258
Query: 252 ---CFRAAALMETAVVM-QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS 307
C A T V + FD L AVEE R T P + +A +DLS
Sbjct: 259 NLACVTHGA---TMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLS 315
Query: 308 SLETVACGAAPLGKDTIMAFASKFP-----KVV-------LVQAYGLTESTAGVFRT-VG 354
SL T G IMA S P +V+ + AYG+TE++ +T
Sbjct: 316 SLRT--------G---IMA-GSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTD 363
Query: 355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL 414
+R + GR LE KIVDPETG+++P G++GEL RG ++MKGY +PE T+ +
Sbjct: 364 DPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAI 423
Query: 415 LPDGWMRTGDLCYIDEDGFLFIVDRLKDLI 444
DGWM TGDL +DE+G++ IV R+KD+I
Sbjct: 424 DADGWMHTGDLAVMDEEGYVNIVGRIKDMI 453
|
Length = 559 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 1e-45
Identities = 117/416 (28%), Positives = 183/416 (43%), Gaps = 28/416 (6%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
R D AL+ +++E N +A+ L + L K D L NS +L+
Sbjct: 23 RYPDKTALVFG--DRSWTYAELDAAVNRVAAALLD-LGLKKGDRVAALGHNSDAYALLWL 79
Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSS----VVHKLAKLKH-RTILIDS 168
+ G + P N + T E++ + S + LA L IL
Sbjct: 80 ACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLV 139
Query: 169 PEFDSMTMSWNSKHEL--------DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAA 220
W + ++ D+A I+Y+SGT KG MLTHR L A
Sbjct: 140 LGGREAPGGWLDFADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAE 199
Query: 221 VASSFASSPKRVSPA-VMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVE 278
S + +S + L +P +H L F + T V++ D +++L+ +E
Sbjct: 200 YVSCIVAG--DMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELILRTIE 257
Query: 279 EFRVTHAAVTPPIV-VAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLV 337
R+T + PP V +++ + D DLSSL GA+ + + + + P +
Sbjct: 258 AERIT-SFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFY 316
Query: 338 QAYGLTESTAGVFRTV-GPDE-CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR 395
YG TE TV GP+E RR GS GR +E ++VD + G+ + PG+ GE+ R
Sbjct: 317 NCYGQTE--IAPLATVLGPEEHLRRPGSAGRPVLNVETRVVD-DDGNDVAPGEVGEIVHR 373
Query: 396 GPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQV 451
P +M GY +PE T+ GW +GDL +DE+G++ +VDR KD+IK G V
Sbjct: 374 SPQLMLGYWDDPEKTAEAFR-GGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENV 428
|
Length = 523 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 1e-44
Identities = 109/388 (28%), Positives = 178/388 (45%), Gaps = 42/388 (10%)
Query: 70 VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
V+F E S+A L + + K D +L N +E+ ++ +L LG + N
Sbjct: 28 VTFMELHEAVVSVAGKLAALG-VKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRL 86
Query: 130 TESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTI--LIDSPEFDSMTMSWNSKHELDRA 187
+ E+ Q+ + KL L++ P+ + + +LD
Sbjct: 87 SREELLWQLDDAEVKCLITDDDFEAKLIPGISVKFAELMNGPKEE---AEIQEEFDLD-- 141
Query: 188 KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAV---------ML 238
+VA IMY+SGTTG+ KGV+ T+ N + S+ V A+ L
Sbjct: 142 -----EVATIMYTSGTTGKPKGVIQTYGN-------HWWSA---VGSALNLGLTEDDCWL 186
Query: 239 FTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKG 298
+P FHI GL R+ V++++FD + + K ++ VT +V ++ + +
Sbjct: 187 AAVPIFHISGLSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLER 246
Query: 299 GSTDGYDLSSLETVACGAAPLGKDTIMAFASK-FPKVVLVQAYGLTESTAGVFRTVGPDE 357
Y SS + G P K + K P + Q+YG+TE TA T+ P++
Sbjct: 247 LGEGTYP-SSFRCMLLGGGPAPKPLLEQCKEKGIP---VYQSYGMTE-TASQIVTLSPED 301
Query: 358 CR-RWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP 416
+ GS G+ E KI G +PP +EGE+ ++GP + KGY+ + T T
Sbjct: 302 ALTKLGSAGKPLFPCELKIEK--DGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQ- 358
Query: 417 DGWMRTGDLCYIDEDGFLFIVDRLKDLI 444
DGW +TGD+ Y+DE+GFL+++DR DLI
Sbjct: 359 DGWFKTGDIGYLDEEGFLYVLDRRSDLI 386
|
Length = 483 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 2e-44
Identities = 118/435 (27%), Positives = 198/435 (45%), Gaps = 55/435 (12%)
Query: 64 SVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIIS 123
S G +++ E + + + A++LQ T L D V N ++ P+ F + G+I+
Sbjct: 44 SNLGKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVV 103
Query: 124 PANPVNTESEISRQIQ---------LSN---------------------------PVIAF 147
NP+ T E+ Q L+N P+
Sbjct: 104 NTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRL 163
Query: 148 ATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRV 207
++VV + K+ L + +F+ ++ + + A DVA + Y+ GTTG
Sbjct: 164 LINAVVKHVKKMVPAYHLPQAVKFNDA-LAKGAGQPVTEANPQADDVAVLQYTGGTTGVA 222
Query: 208 KGVMLTHRNLTAAVASSFASSPKRVSPA--VMLFTMPYFHIYGLFFCFRAAALMETA--- 262
KG MLTHRNL A + A ++ +++ +P +HIY F F A+M
Sbjct: 223 KGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLPLYHIYA--FTFHCMAMMLIGNHN 280
Query: 263 -VVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGK 321
++ DL M+K + +++ + + VA+ + D S+L+ G L
Sbjct: 281 ILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGGMALQL 340
Query: 322 DTIMAFASKFPKVV---LVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDP 378
T A ++ +V + + YG+TE++ V +V P + + G+ G K++D
Sbjct: 341 AT----AERWKEVTGCAICEGYGMTETSPVV--SVNPSQAIQVGTIGIPVPSTLCKVIDD 394
Query: 379 ETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVD 438
+ G+ LP G+ GEL ++GP +MKGY PE T L DGW++TGD+ I EDG++ IVD
Sbjct: 395 D-GNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVD 453
Query: 439 RLKDLIKYKGYQVLP 453
R KD+I G+ V P
Sbjct: 454 RKKDMILVSGFNVYP 468
|
Length = 562 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 5e-44
Identities = 129/442 (29%), Positives = 195/442 (44%), Gaps = 61/442 (13%)
Query: 64 SVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIIS 123
S G+ +S++E R + + A+YLQ T L D V N ++ PI F L G+I+
Sbjct: 44 SNLGVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVV 103
Query: 124 PANPVNTESEISRQIQ--------------------LSNPVIAFA--------------- 148
NP+ T E+ Q + L + I +
Sbjct: 104 NTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGW 163
Query: 149 -TSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRV 207
++VV K+ K+ L + F + L V D+A + Y+ GTTG
Sbjct: 164 LVNTVVDKVKKMVPAYHLPQAVPFKQA-LRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLA 222
Query: 208 KGVMLTHRNLTA---AVASSFASSPKRVSP------AVMLFTMPYFHIYGLFFCFRAAAL 258
KG MLTH NL A V + + P VM+ +P +HIY F +
Sbjct: 223 KGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYA--FTANCMCM 280
Query: 259 META----VVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVAC 314
M + ++ D+ +K + ++R + + VA+ D S+L+
Sbjct: 281 MVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKLTNS 340
Query: 315 GAAPLGKDTIMAFASKFPKVV---LVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGL 371
G L K T A ++ ++ +V+ YGLTE T+ V T E R G+ G G
Sbjct: 341 GGTALVKAT----AERWEQLTGCTIVEGYGLTE-TSPVASTNPYGELARLGTVGIPVPGT 395
Query: 372 EAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDED 431
K++D + G+ LP G+ GEL I+GP +MKGY +PE T+ L +GW +TGD+ ID D
Sbjct: 396 ALKVIDDD-GNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPD 454
Query: 432 GFLFIVDRLKDLIKYKGYQVLP 453
GF+ IVDR KDLI G+ V P
Sbjct: 455 GFVRIVDRKKDLIIVSGFNVYP 476
|
Length = 562 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 159 bits (403), Expect = 5e-43
Identities = 125/444 (28%), Positives = 201/444 (45%), Gaps = 61/444 (13%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
D A IN G ++F + R+ + A+YLQN L K D ++ N ++ PI F +L
Sbjct: 38 DQPAFIN--MGEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGIL 95
Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KH--------- 161
G+I+ NP+ T E+ Q+ S S+ H L K+ KH
Sbjct: 96 RAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQ 155
Query: 162 -----RTIL-------------IDSPEFDSM--TMSWNSKHELDRAKVCQSDVAAIMYSS 201
T++ P+ S + + + + ++ D+A + Y+
Sbjct: 156 LSTAKGTLVNFVVKYIKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTG 215
Query: 202 GTTGRVKGVMLTHRNLTAAV--ASSFASSPKRVSPAVMLFTMPYFHIYG------LFFCF 253
GTTG KG MLTHRN+ A + A + +++ +P +HI+ LF
Sbjct: 216 GTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLYHIFALTVNCLLFIEL 275
Query: 254 RAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVA 313
L+ T D+ +K ++++ T + A+ D SSL+
Sbjct: 276 GGQNLLIT----NPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSV 331
Query: 314 CGAAPLGKDTIMAFASKFPKVV---LVQAYGLTESTAGVFRTVGPDECRRW-GSTGRLSA 369
G + + A A ++ K+ L++ YGLTE + V +V P + + GS G
Sbjct: 332 GGGMAVQQ----AVAERWVKLTGQYLLEGYGLTECSPLV--SVNPYDLDYYSGSIGLPVP 385
Query: 370 GLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYID 429
E K+VD + G+ +PPG+ GEL ++GP +M GY PE T ++ DGW+ TGD+ +D
Sbjct: 386 STEIKLVDDD-GNEVPPGEPGELWVKGPQVMLGYWQRPEAT-DEVIKDGWLATGDIAVMD 443
Query: 430 EDGFLFIVDRLKDLIKYKGYQVLP 453
E+GFL IVDR KD+I G+ V P
Sbjct: 444 EEGFLRIVDRKKDMILVSGFNVYP 467
|
Length = 560 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 2e-42
Identities = 117/415 (28%), Positives = 166/415 (40%), Gaps = 51/415 (12%)
Query: 67 GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
R ++ E R LAS L + + K D VL+ N+ + +F + G ++
Sbjct: 27 DRRYTYRETYDRCRRLASALSKLG-IGKGDVVAVLAPNTPAMLEAHFGVPMAGAVL---V 82
Query: 127 PVNT---ESEISRQIQLSNPVIAFA----TSSVVHKLAKLKHRTILIDSPEFDSMTMSW- 178
P+NT +I+ + S + F S LA L + I+ S
Sbjct: 83 PLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALALLSTKEIIDTEIIVISPAAEDS 142
Query: 179 -----------NSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRN--LTAAVASSF 225
L + D ++ Y+SGTTG KGV+ THR L A
Sbjct: 143 EEGDYEDLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYLNALGNVIE 202
Query: 226 ASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHA 285
P R V L+T+P FH G F + A+ T V +++ D + +E+ +VTH
Sbjct: 203 WGMPDR---PVYLWTLPMFHCNGWCFPWAITAVGGTHVCLRKVDAPAIYDLIEKHKVTHL 259
Query: 286 AVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES 345
P ++ ++ D L V AP I +V YGLTE
Sbjct: 260 CGAPTVLNMLANAPEADKLPLPRPVRVMTAGAPPPPAVIKKMEELGFEVT--HVYGLTE- 316
Query: 346 TAGVFRTV---------GPDECR-----RWGSTGRLSAGLEAKIVDPETGDSLPP-GKE- 389
T G TV P E R R G R E +VDPET +P GK
Sbjct: 317 TYGPI-TVCEWKPEWDALPAEERARLKARQGV--RYVGLEEVDVVDPETMKDVPRDGKTI 373
Query: 390 GELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLI 444
GE+ +RG T+MKGY PE T GW +GDL + DG++ I DR KD+I
Sbjct: 374 GEIVMRGNTVMKGYYKNPEAT-EEAFAGGWFHSGDLAVVHPDGYIEIKDRSKDII 427
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 5e-42
Identities = 90/282 (31%), Positives = 126/282 (44%), Gaps = 28/282 (9%)
Query: 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF 250
D+AA ++ GTTG K +HRN A + S V+L +P FH+ G
Sbjct: 1 PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPG-DVLLNGLPLFHVGGAI 59
Query: 251 ----FCFRAAA--LMETAV------VMQRFDLKMMLKAVEEFRVTH-AAVTPPIVVAMSK 297
A ++ T V+ F K VE +RVT +AV P V+A
Sbjct: 60 VTGLAPLARGATVVLPTPSGFRNPAVVANF-----WKIVERYRVTLLSAV--PTVLAALL 112
Query: 298 GGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDE 357
D+SSL GAAPL + F + V +V+ YG+TE T GV
Sbjct: 113 QVPLGDADISSLRYALTGAAPLPVEVARRFEAV-TGVPVVEGYGMTEGT-GVSAINPRGG 170
Query: 358 CRRWGSTGRLSAGLEAKIVDPETGDSLP----PGKEGELSIRGPTIMKGYVGEPEVTSAT 413
RR GS G ++ + G +L PG+ G L+IRGP + GY+ +
Sbjct: 171 PRRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYL-NDAHNAGA 229
Query: 414 LLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLL 455
L DGW+ TGDL ID DG+L++ R KDLI G+ + P +
Sbjct: 230 RLEDGWLNTGDLGRIDADGYLWLTGRAKDLIIRGGHNIDPQM 271
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 1e-40
Identities = 117/445 (26%), Positives = 196/445 (44%), Gaps = 78/445 (17%)
Query: 67 GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
G +++ E + A+YL +L K D ++ N ++ PI F +L G+ + N
Sbjct: 48 GKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVN 107
Query: 127 PVNTESEISRQIQLS---------------------NPV-----------IAFATSSVVH 154
P+ T E+ Q+ S PV + F +++V+
Sbjct: 108 PLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVN 167
Query: 155 KLAKLKHRTILIDSPEFD-------SMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRV 207
+ K + + PE+ ++ KH + ++ D+A + Y+ GTTG
Sbjct: 168 FVVKYVKKLV----PEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVA 223
Query: 208 KGVMLTHRNLTAAV--ASSFASSPKRVSPA--VMLFTMPYFHIYGLFFCFRAAALMETAV 263
KG MLTHRNL A + A + + ++ V++ +P +HI+ AL +
Sbjct: 224 KGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIF---------ALTANGL 274
Query: 264 VMQRF-----------DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETV 312
V + D+ +K +++ R T + + D D SSL+
Sbjct: 275 VFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMT 334
Query: 313 ACGAAPLGKDTIMAFASKFPKVV---LVQAYGLTESTAGVFRTVGPDECRRW-GSTGRLS 368
G + + + A ++ +V LV+AYGLTE++ + P + + GS G
Sbjct: 335 LGGGMAVQR----SVAERWKQVTGLTLVEAYGLTETSPAA--CINPLTLKEYNGSIGLPI 388
Query: 369 AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYI 428
+A I D + G L G+ GEL I+GP +MKGY PE T+ + DGW+ TGD+ +
Sbjct: 389 PSTDACIKD-DAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARM 447
Query: 429 DEDGFLFIVDRLKDLIKYKGYQVLP 453
DE GF++IVDR KD+I G+ V P
Sbjct: 448 DEQGFVYIVDRKKDMILVSGFNVYP 472
|
Length = 560 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 1e-40
Identities = 124/454 (27%), Positives = 188/454 (41%), Gaps = 74/454 (16%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
R D AL+ LR ++ + + LA L + + D + + N E + F
Sbjct: 30 RFPDREALVVRHQALRYTWRQLADAVDRLARGLLALG-VQPGDRVGIWAPNCAEWLLTQF 88
Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNP--VI---AFATSSVVHKL------------ 156
+ +G I+ NP SE+ + S VI AF TS L
Sbjct: 89 ATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQP 148
Query: 157 -----AKLKH--RTILIDSPEFDSMTMSWN---------SKHELD--RAKVCQSDVAAIM 198
+L + + +W+ S+ L +A + + D I
Sbjct: 149 GALACERLPELRGVVSLAPAPPPGFL-AWHELQARGETVSREALAERQASLDRDDPINIQ 207
Query: 199 YSSGTTGRVKGVMLTHRNLT-----AAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCF 253
Y+SGTTG KG L+H N+ A + + P +P +H +G+
Sbjct: 208 YTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVP------VPLYHCFGMVLAN 261
Query: 254 RAAALMETAVVM--QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLET 311
+ +V + FD L+AVEE R T P + +A +DLSSL T
Sbjct: 262 LGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRT 321
Query: 312 VACGAAPLGKDTIMAFASKFPKVV-----------LVQAYGLTESTAGVFRTVGPDEC-R 359
IMA A +V+ + AYG+TE++ +T D+ R
Sbjct: 322 -----------GIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLER 370
Query: 360 RWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGW 419
R + GR LE K+VDP+ G ++P G+ GEL RG ++MKGY PE T+ ++ DGW
Sbjct: 371 RVETVGRTQPHLEVKVVDPD-GATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGW 429
Query: 420 MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
M TGDL +DE G++ IV R KD+I G + P
Sbjct: 430 MHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYP 463
|
Length = 558 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 1e-40
Identities = 113/387 (29%), Positives = 172/387 (44%), Gaps = 65/387 (16%)
Query: 104 NSIEIPILYFSLLSLGVIISPANPVNTESE---ISRQIQLSNPVIAFATSSVVHKLAK-- 158
N E +F L +G I+ P N E I + Q S V + + ++ +
Sbjct: 71 NCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQED 130
Query: 159 ---LKHRTIL-IDSPEFDSMTMSWNSKHELDRAKVCQS------DVAAIMYSSGTTGRVK 208
L+H + + P D S+ A +C + D A I+++SGTT R K
Sbjct: 131 ATPLRHICLTRVALPADDG-VSSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPK 189
Query: 209 GVMLTHRNLT-AAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALM------ET 261
GV++TH NL A S++ + + V L MP FHI + A M T
Sbjct: 190 GVVITHYNLRFAGYYSAWQCALR--DDDVYLTVMPAFHID-----CQCTAAMAAFSAGAT 242
Query: 262 AVVMQRFDLKMMLKAVEEFRVTHAAVTPPIV-VAMSKGGSTDGYD-----------LSSL 309
V+++++ + V ++R T P ++ M + S + LS
Sbjct: 243 FVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYLNLSDQ 302
Query: 310 ETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG--PDECRRWGSTGRL 367
E KD AF +F V L+ +YG+TE+ G+ +G P + RRW S GR
Sbjct: 303 E----------KD---AFEERF-GVRLLTSYGMTETIVGI---IGDRPGDKRRWPSIGRP 345
Query: 368 SAGLEAKIVDPETGDSLPPGKEGELSIRG---PTIMKGYVGEPEVTSATLLPDGWMRTGD 424
EA+I D + LP G+ GE+ I+G TI K Y +P+ T+ L DGW+ TGD
Sbjct: 346 GFCYEAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGD 404
Query: 425 LCYIDEDGFLFIVDRLKDLIKYKGYQV 451
Y+DE+GF + VDR ++IK G V
Sbjct: 405 TGYVDEEGFFYFVDRRCNMIKRGGENV 431
|
Length = 517 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 6e-40
Identities = 129/449 (28%), Positives = 186/449 (41%), Gaps = 83/449 (18%)
Query: 45 SSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTN 104
+LRA D D I + GLR ++ + + LA+ L + + D V
Sbjct: 7 DALRAAFA--DRDAPF-IETPDGLRYTYGDLDAASARLANLLVAL-GVKPGDRVAVQVEK 62
Query: 105 SIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL--KHR 162
S E LY + L G + P N T +E+ I + P + + L+K+
Sbjct: 63 SPEALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAG 122
Query: 163 TILIDSPEFDSMTMSWNSKHEL-DRAKVCQS----------DVAAIMYSSGTTGRVKGVM 211
+ T+ + L + A D+AAI+Y+SGTTGR KG M
Sbjct: 123 APHV-------ETLDADGTGSLLEAAAAAPDDFETVPRGADDLAAILYTSGTTGRSKGAM 175
Query: 212 LTHRNLTAAVASSFASSPK---RVSPA-VMLFTMPYFHIYGLFF----CFRAAALMETAV 263
L+H NL S A + R +P V++ +P FH +GLF A A M +
Sbjct: 176 LSHGNL-----LSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASM---I 227
Query: 264 VMQRFDLKMMLKA---------VEEFRV---THAAVTPPIVVAMSKGGSTDGYDLSSLET 311
+ +FD +L V F +T E
Sbjct: 228 FLPKFDPDAVLALMPRATVMMGVPTFYTRLLQEPRLTR--------------------EA 267
Query: 312 VA------CGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGP-DECRRWGST 364
A G+APL +T F + +L + YG+TE+ T P D RR G+
Sbjct: 268 AAHMRLFISGSAPLLAETHREFQERTGHAIL-ERYGMTET---NMNTSNPYDGERRAGTV 323
Query: 365 GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGD 424
G G+ ++ DPETG LPPG+ G + ++GP + KGY PE T+ DG+ TGD
Sbjct: 324 GFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGD 383
Query: 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
L IDE G++ IV R KDLI GY V P
Sbjct: 384 LGKIDERGYVHIVGRGKDLIISGGYNVYP 412
|
Length = 504 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 8e-40
Identities = 126/464 (27%), Positives = 207/464 (44%), Gaps = 57/464 (12%)
Query: 32 PPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTR 91
P + P++ +Y+ + P A+I G ++++E ++ A+ L+
Sbjct: 29 PHGERPLT--EYLRAWARERP----QRPAII--FYGHVITYAELDELSDRFAALLRQRG- 79
Query: 92 LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNP--VIAF-A 148
+ D V N + I++F +L LG + P +P+ E E+S ++ + ++A
Sbjct: 80 VGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQ 139
Query: 149 TSSVVHK-LAKLKHRTILIDS--------------PEFDSMTMSWNSKHELDRAKVCQS- 192
+ VV + A+ R +++ S + ++ +L A +
Sbjct: 140 LAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDLLPALRACTA 199
Query: 193 ----------DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMP 242
+AA+ Y+ GTTG KG T R++ A+++A + +V L +P
Sbjct: 200 PVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLP 259
Query: 243 YFHIYG-----LFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSK 297
F I G LF F A T V++ R+D + AVE +RVT + V +
Sbjct: 260 EFWIAGENFGLLFPLFSGA----TLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMD 315
Query: 298 GGSTDGYDLSSLETVACGA--APLGKDTIMAFASKFPKVVLVQAYGLTES------TAGV 349
YDLSSL V + L D + + V+ A+G+TE+ TAG
Sbjct: 316 HPRFAEYDLSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAG- 374
Query: 350 FRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEV 409
F+ D + G G E KI D ETG+ LP G EGE+ +R P+++KGY +PE
Sbjct: 375 FQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEA 434
Query: 410 TSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
T+ L DGW+ TGD+ IDE GFL + R K+++K G V P
Sbjct: 435 TAEALR-DGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFP 477
|
Length = 567 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 1e-39
Identities = 108/401 (26%), Positives = 180/401 (44%), Gaps = 18/401 (4%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
+A ++ G R +++E LA+ L+ + VL+ NS+ + L+F+
Sbjct: 10 QRLAAVDLALGRRWTYAELDALVGRLAAVLRR-RGCVDGERLAVLARNSVWLVALHFACA 68
Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTM 176
+G I P N + SE+ +Q + P + ++ A RT + D +
Sbjct: 69 RVGAIYVPLNWRLSASELDALLQDAEPRL------LLGDDAVAAGRTDVED---LAAFIA 119
Query: 177 SWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAV 236
S ++ D + V+ I+++SGT+G+ KGVML+ RNL A +F + + +
Sbjct: 120 SADALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQT-AHNFGVLGRVDAHSS 178
Query: 237 MLFTMPYFHIYGLFFCFRAAALMETAV-VMQRFDLKMMLK--AVEEFRVTHAAVTPPIVV 293
L P FHI GL R + ++ V F+ K L +TH P +
Sbjct: 179 FLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQ 238
Query: 294 AMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353
A D L L + G AP + I+ + + +V +G++E+ +V
Sbjct: 239 AFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDD--GIPMVDGFGMSEAGTVFGMSV 296
Query: 354 GPDECR-RWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSA 412
D R + G+ G + ++ ++VD + G+ P G GEL +RGP + GY P+ T+
Sbjct: 297 DCDVIRAKAGAAGIPTPTVQTRVVD-DQGNDCPAGVPGELLLRGPNLSPGYWRRPQATAR 355
Query: 413 TLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
DGW RTGD+ D DGF ++VDR KD+ G V P
Sbjct: 356 AFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYP 396
|
Length = 488 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 148 bits (374), Expect = 3e-39
Identities = 99/272 (36%), Positives = 140/272 (51%), Gaps = 19/272 (6%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS----SFASSPKRVSPAVMLFTMPYFHIYG 248
DVA + Y+ GTTG KG MLTH NLT+AV+ S R ++ +P FHIY
Sbjct: 193 DVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYA 252
Query: 249 L----FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY 304
L R L+ + QRFD+ + + +EE R T P + +A++ S +
Sbjct: 253 LTVILLRSLRRGDLIS---LHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKR 309
Query: 305 DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE--STAGVFRTVGPDECRRWG 362
DLSSL T+ G APL + F K L +G+TE S GPD + G
Sbjct: 310 DLSSLATIGSGGAPLPVEVANFFERKTGLK-LKSGWGMTETCSPGTGHPPEGPD---KPG 365
Query: 363 STGRLSAGLEAKIVD-PETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMR 421
S G + G+E +V + LPPG+ GEL IRGP + +GY PE ++ + D ++
Sbjct: 366 SIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFL- 424
Query: 422 TGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
TGD+ Y+D DG+ F+VDR KD+I G+ V P
Sbjct: 425 TGDIGYMDTDGYFFLVDRKKDMIISGGFNVYP 456
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 1e-38
Identities = 88/253 (34%), Positives = 133/253 (52%), Gaps = 7/253 (2%)
Query: 195 AAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFR 254
A IMY+SGTTGR KG +LTH NLT + ++ ++ V +P FHI G+
Sbjct: 177 ALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLP 236
Query: 255 AAALMETAVV--MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETV 312
L V+ + FD +L +E +VT + P A+ DL +L +
Sbjct: 237 GLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRDL-ALRVL 295
Query: 313 ACGAAPLGKDTIM-AFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGL 371
+ GAAP DT++ A+ FP+ ++ A+G TE + +G D R+ GS G++ +
Sbjct: 296 SWGAAP-ASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTV 354
Query: 372 EAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDED 431
A++VD D +P G+ GE+ R PT+M GY PE T A GW +GDL DE+
Sbjct: 355 AARVVDENMND-VPVGEVGEIVYRAPTLMSGYWNNPEAT-AEAFAGGWFHSGDLVRQDEE 412
Query: 432 GFLFIVDRLKDLI 444
G++++VDR KD+I
Sbjct: 413 GYVWVVDRKKDMI 425
|
Length = 542 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 4e-38
Identities = 106/403 (26%), Positives = 178/403 (44%), Gaps = 36/403 (8%)
Query: 71 SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG---VIISPANP 127
++ E R N LA +L+ + D VL S E+ + ++L G V + PA P
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60
Query: 128 VNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRA 187
++ ++ + + S++ +LA L IL+D E ++ + A
Sbjct: 61 ---AERLAFILEDAGARLLLTDSALASRLAGLVLPVILLDPLELAALDDAPAP--PPPDA 115
Query: 188 KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA-VMLFTMPY--- 243
D+A ++Y+SG+TGR KGV++THR+L +A + + P +L
Sbjct: 116 PSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAW--LARRYGLDPDDRVLQFASLSFD 173
Query: 244 FHIYGLFFCFRAAALMETAVV----MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG 299
+ +F A A T VV +R D ++ + E VT +TP ++ ++
Sbjct: 174 ASVEEIFGALLAGA---TLVVPPEDEERDDAALLAALIAEHPVTVLNLTPSLLALLA--- 227
Query: 300 STDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV-FRTVGPDEC 358
+ L+SL V G L + + ++ P L+ YG TE+T V PD+
Sbjct: 228 AALPPALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDPDDA 287
Query: 359 RRWGST--GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP 416
R GR A ++D + +P G GEL I GP + +GY+ PE+T+ +P
Sbjct: 288 PRESPVPIGRPLANTRLYVLDDD-LRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVP 346
Query: 417 DGWM--------RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQV 451
D + RTGDL DG L + R+ D +K +GY++
Sbjct: 347 DPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRI 389
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 7e-38
Identities = 104/389 (26%), Positives = 169/389 (43%), Gaps = 40/389 (10%)
Query: 71 SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNT 130
++ + LA L+ + ++ NSIE+ +L + L LG I+ N T
Sbjct: 1 TWQDLDCEAAHLAKALK-AQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLT 59
Query: 131 ESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVC 190
E+E + Q++ + + S L+ + DS D + + + L A
Sbjct: 60 ENERTNQLEDLDVQLLLTDS-------LLEEKDFQADS--LDRIEAAGRYETSLS-ASFN 109
Query: 191 QSDVAAIMYSSGTTGRVKGVMLTHRN-LTAAVAS--SFASSPKRVSPAVMLFTMPYFHIY 247
+A +M++SGTTG+ K V T RN +AV S + + L ++P +HI
Sbjct: 110 MDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTED----DNWLLSLPLYHIS 165
Query: 248 GLFFCFRAAALMETAVVMQRF-DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDL 306
GL FR T ++ +F L M+ RVTH ++ P + + G +
Sbjct: 166 GLSILFRWLIEGATLRIVDKFNQLLEMIA---NERVTHISLVPTQLNRLLDEGGHN---- 218
Query: 307 SSLETVACGAAPLGKDTI-MAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTG 365
+L + G + + I A P + +YG+TE T T P+ G
Sbjct: 219 ENLRKILLGGSAIPAPLIEEAQQYGLP---IYLSYGMTE-TCSQVTTATPEMLHARPDVG 274
Query: 366 RLSAGLEAKI-VDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGD 424
R AG E KI VD + G GE+ ++G +MKGY+ + E+T A GW TGD
Sbjct: 275 RPLAGREIKIKVDNKEG-------HGEIMVKGANLMKGYLYQGELTPAFE-QQGWFNTGD 326
Query: 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
+ +D +GFL+++ R DLI G + P
Sbjct: 327 IGELDGEGFLYVLGRRDDLIISGGENIYP 355
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 9e-38
Identities = 95/393 (24%), Positives = 162/393 (41%), Gaps = 60/393 (15%)
Query: 70 VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
+F+E ++ A++L+++ + + D VL E+ + + LG + P
Sbjct: 1 WTFAELKEESDRAANFLKDLG-VGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTT-- 57
Query: 130 TESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKV 189
+ ++L + R I+
Sbjct: 58 ----------------QLGPKDIRYRLERAGARAIVTS---------------------- 79
Query: 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTM--PYFHIY 247
D A + ++SGTTG K V+ TH + + + + P + +T+ P +
Sbjct: 80 -ADDPALLYFTSGTTGLPKMVLHTHSYPLGHLVT--GAYWLDLRPDDLHWTIADPGW-AK 135
Query: 248 GLFFCFRAAALMETAVV---MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY 304
G + A L+ AV +RFD + L+ +E + VT P + + + Y
Sbjct: 136 GAWSSLFAPWLLGAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAYRMLLQQDLS-SY 194
Query: 305 DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGST 364
D S L V PL + I + + + + YG TE+ V P + GS
Sbjct: 195 DFSHLRHVVSAGEPLNPEVIDWWRAAT-GLPIRDGYGQTETGLLV--ANFPGMEVKPGSM 251
Query: 365 GRLSAGLEAKIVDPETGDSLPPGKEGELSI----RGPTIMKGYVGEPEVTSATLLPDGWM 420
GR + G I+D E G+ LPPG+EG++++ R P + +GY+ +PE T AT+ W
Sbjct: 252 GRPAPGYRVAIIDDE-GNELPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATIR-GDWY 309
Query: 421 RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
TGD DEDG+ + V R D+IK GY++ P
Sbjct: 310 LTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGP 342
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 4e-37
Identities = 85/272 (31%), Positives = 109/272 (40%), Gaps = 32/272 (11%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSPAVMLFTMPYFHIYG 248
DVAA ++ GTTG K TH N A A P + +P FH+
Sbjct: 213 DDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDT----VFCGLPLFHVNA 268
Query: 249 LFFCFRAAALMETAVV------------MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMS 296
L A VV + F K VE +R+ P V A
Sbjct: 269 LLVTGLAPLARGAHVVLATPQGYRGPGVIANF-----WKIVERYRIN-FLSGVPTVYAAL 322
Query: 297 KGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPD 356
DG+D+SSL CGAAPL + F + V +V+ YGLTE+T PD
Sbjct: 323 LQVPVDGHDISSLRYALCGAAPLPVEVFRRFEAA-TGVRIVEGYGLTEATCVSSVNP-PD 380
Query: 357 ECRRWGSTGRLSAGLEAKIV--DPETGDS--LPPGKEGELSIRGPTIMKGYVGEPEVTSA 412
RR GS G ++V D + G L I GP + GY+ E
Sbjct: 381 GERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYL-EAAHNKG 439
Query: 413 TLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLI 444
L DGW+ TGDL ID DG+ ++ R KDLI
Sbjct: 440 LWLEDGWLNTGDLGRIDADGYFWLTGRAKDLI 471
|
Length = 632 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 2e-36
Identities = 88/266 (33%), Positives = 129/266 (48%), Gaps = 25/266 (9%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRV-SPAVMLFTMPYFHIYGLFF 251
D A I++SSG+ G KGVML+H N+ + + S + + V+L ++P+FH +GL
Sbjct: 783 DTATIIFSSGSEGEPKGVMLSHHNILSNIEQ--ISDVFNLRNDDVILSSLPFFHSFGLTV 840
Query: 252 CFRAAAL--METAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSL 309
L ++ D + K V + R T TP + + +SL
Sbjct: 841 TLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASL 900
Query: 310 ETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTEST------------AGVFRTVGPDE 357
V GA L + AF KF + +++ YG TE++ A R G E
Sbjct: 901 RLVVAGAEKLKPEVADAFEEKF-GIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKE 959
Query: 358 CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTS---ATL 414
GS G G+ +IVDPET + LPPG++G + I GP +MKGY+G+PE T+ +
Sbjct: 960 ----GSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDI 1015
Query: 415 LPDGWMRTGDLCYIDEDGFLFIVDRL 440
GW TGD ++DEDGFL I DR
Sbjct: 1016 DGIGWYVTGDKGHLDEDGFLTITDRY 1041
|
Length = 1146 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 2e-36
Identities = 120/411 (29%), Positives = 172/411 (41%), Gaps = 39/411 (9%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTR-LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANP 127
++ E R ++LA+ L R + K D V S N ++ F+ LG + P N
Sbjct: 32 SWTWREIDARVDALAAALA--ARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVPTNF 89
Query: 128 VNTESEISRQIQLSNPVI-----AFAT-SSVVHKLAKLKHRTILIDSPEF----DSMTMS 177
T E++ + S F ++ V + + I +++
Sbjct: 90 RQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGARAGLDYEALVAR 149
Query: 178 WNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFAS-SPKRVSPAV 236
+ + A V D ++SGTTGR K +LTH + + + A P
Sbjct: 150 -HLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDA 208
Query: 237 MLFTMPYFH---IYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVV 293
L P H I+ L R AA + +RFD + VE RVT+ P I+
Sbjct: 209 SLVVAPLSHGAGIHQLCQVARGAATVLLPS--ERFDPAEVWALVERHRVTNLFTVPTILK 266
Query: 294 AMSKGGSTDGYDLSSLETVACGAAPLGK-DTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352
+ + + D YD SSL V AP+ + D A A VLVQ +GL E T + T
Sbjct: 267 MLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKLGK--VLVQYFGLGEVTGNI--T 322
Query: 353 V----------GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
V GPD R G+ G G+E +I D E G LPPG+ GE+ + GP + G
Sbjct: 323 VLPPALHDAEDGPDA--RIGTCGFERTGMEVQIQDDE-GRELPPGETGEICVIGPAVFAG 379
Query: 403 YVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
Y PE A DGW RTGDL ++D GFL+I R D+ G V P
Sbjct: 380 YYNNPEAN-AKAFRDGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYP 429
|
Length = 528 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 5e-36
Identities = 105/399 (26%), Positives = 162/399 (40%), Gaps = 67/399 (16%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
+F + +N LA+ L+ + + + D V S E I + ++ LG + P + +
Sbjct: 6 EYTFGQLKDASNRLANALRELG-VERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVL 64
Query: 129 NTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAK 188
F +V H+L R ++ D +
Sbjct: 65 ------------------FGPDAVEHRLRDSGARVLVTDGSD------------------ 88
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSPAVMLFTMPYFH 245
D A ++Y+SGTTG KG + HR L V F +P+ V +
Sbjct: 89 ----DPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELAPRP--GDVFWTPADWAW 142
Query: 246 IYGLFFCFRAAALMETAVV---MQRFDLKMMLKAVEEFRVTHAAVTPPIV-VAMSKGGST 301
I GL A VV MQRFD + + + VT+A + P + + G
Sbjct: 143 IGGLLDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTNAFLPPTALKMMRRVGSER 202
Query: 302 DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRW 361
YDL L VA G LG+ ++ +A + + + YG TE+ VG C
Sbjct: 203 ARYDLR-LRAVASGGESLGE-ELLEWARDELGLTVNEFYGQTEANL----VVG--NCAAL 254
Query: 362 -----GSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR--GPTIMKGYVGEPEVTSATL 414
GS G+ G E +VD G +PPG+ GE++++ P + GY PE T+A
Sbjct: 255 GPARPGSMGKPVPGHEVAVVDDA-GRPVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKF 313
Query: 415 LPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
W+ TGDL D DG+L+ R D+IK GY++ P
Sbjct: 314 A-GDWLLTGDLGRRDADGYLWFKGRADDVIKSSGYRIGP 351
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 1e-35
Identities = 117/411 (28%), Positives = 186/411 (45%), Gaps = 43/411 (10%)
Query: 60 ALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG 119
A+I + +G V++ E R+N LA L+ + L + D +L N+ E +Y++ G
Sbjct: 2 AVIMAPSGEVVTYGELEARSNRLAHGLRALG-LREGDVVAILLENNPEFFEVYWAARRSG 60
Query: 120 VIISPANPVNTESEISRQIQLSNP---VIAFATSSVVHKLAK-----LKHRTILI-DSPE 170
+ +P N T +EI+ + S +++ A + +LA + ++ P
Sbjct: 61 LYYTPINWHLTAAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVVAGPVPG 120
Query: 171 FDSMTMSWNSKHELDRAKVCQSDV--------AAIMYSSGTTGRVKGVM--LTHRNLTAA 220
F S + A Q D A ++YSSGTTGR KG+ L + A
Sbjct: 121 FRS----------YEEALAAQPDTPIADETAGADMLYSSGTTGRPKGIKRPLPGLDPDEA 170
Query: 221 ---VASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAV 277
+ + +V L P +H L F A AL T VVM++FD + L +
Sbjct: 171 PGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALI 230
Query: 278 EEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKF-PKV 334
E +RVTH+ + P + V M K YD+SSL AAP + A + P
Sbjct: 231 ERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWGP-- 288
Query: 335 VLVQAYGLTESTAGVFRTVGPDE-CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELS 393
++ + Y +E G + ++ GS G+ G E +I+D E G+ LPPG+ G +
Sbjct: 289 IIHEYYASSE--GGGVTVITSEDWLAHPGSVGKAVLG-EVRILD-EDGNELPPGEIGTVY 344
Query: 394 IRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLI 444
Y +PE T+A P GW+ GD+ Y+DEDG+L++ DR D+I
Sbjct: 345 FEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMI 395
|
Length = 502 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 2e-34
Identities = 111/438 (25%), Positives = 184/438 (42%), Gaps = 55/438 (12%)
Query: 42 DYVSSLRATLPWRDDDTVALI--NSVTGL--RVSFSEFTRRTNSLASYLQNVTRL--SKN 95
D + + A+ P D A+ TG R ++ E + +A L RL +
Sbjct: 28 DDLDACVASCP----DKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGL---ARLGVGRG 80
Query: 96 DTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV-- 153
D N E +LY + +G +++P P+ E E+S ++ A S V+
Sbjct: 81 DVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSF-------MLKHAESKVLVV 133
Query: 154 -----------------HKLAKLKHRTILIDSPEFDS-----MTMSWNSKHE----LDRA 187
+L L+H +++ DS +T +W + + L R
Sbjct: 134 PKTFRGFDHAAMARRLRPELPALRH-VVVVGGDGADSFEALLITPAWEQEPDAPAILARL 192
Query: 188 KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIY 247
+ DV ++Y+SGTTG KGVM T L A + +A + V+L P H
Sbjct: 193 RPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVP-YAERLGLGADDVILMASPMAHQT 251
Query: 248 GLFFCFRAAALMETAVVMQR-FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDL 306
G + ++ V+Q +D + + VT + P + +++ G +
Sbjct: 252 GFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPV 311
Query: 307 SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGR 366
SSL T C AP+ ++ A +V A+G+TE+ A + + R + G
Sbjct: 312 SSLRTFLCAGAPIPG-ALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGC 370
Query: 367 LSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLC 426
G+E ++VD + G LP G+ G L +RG + GY+ P++ DGW TGDL
Sbjct: 371 PLPGVEVRVVDAD-GAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGT--DADGWFDTGDLA 427
Query: 427 YIDEDGFLFIVDRLKDLI 444
ID DG++ I R KD+I
Sbjct: 428 RIDADGYIRISGRSKDVI 445
|
Length = 547 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 1e-33
Identities = 101/413 (24%), Positives = 158/413 (38%), Gaps = 67/413 (16%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
+ D AL V G ++++E R + LA+ L + D V S +
Sbjct: 3 KHPDRPAL--VVGGDTLTYAELKERADRLAARLLALG-GRAGDPVAVYGHKSPDAYAAIL 59
Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDS 173
+ L G P +P I++ ++ + P
Sbjct: 60 ACLKAGAAYVPLDPSQPAERIAKILEAAGPAALV-------------------------- 93
Query: 174 MTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVA---SSFASSPK 230
D+A I+++SG+TG+ KGV ++H NL + + F +
Sbjct: 94 ---------------ADPDDLAYILFTSGSTGKPKGVQISHANLASFLDWMVEDFDLTEG 138
Query: 231 RVSPAVMLFTMPY---FHIYGLFFCFRAAALMETAVVMQRF---DLKMMLKAVEEFRVTH 284
V P+ ++ LF + A T V+ + D + + ++E +T
Sbjct: 139 ----DVFSNQAPFSFDLSVFDLFPALASGA---TLYVIPKEQIADPLALFEFLKEHGLTV 191
Query: 285 AAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE 344
P + + L SL T L K A +FP ++ YG TE
Sbjct: 192 WVSVPSFASLLLLSRELNPESLPSLRTFLFCGEVLPKKLAKALRRRFPNARIINLYGPTE 251
Query: 345 STAGVFR-TVGPDECRRWGS--TGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMK 401
+T V V P+ R G GL A I+D E G +PPG+EGEL I GP +
Sbjct: 252 ATVAVTAYEVTPEPLSRNEPLPIGYPKPGLRALILD-EDGRPVPPGEEGELVIAGPQVSP 310
Query: 402 GYVGEPEVTSATLLPD---GWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQV 451
GY+ PE T+ D W RTGDL Y+++DG L + R IK GY++
Sbjct: 311 GYLNNPEKTAKAFFQDEGQRWYRTGDLVYLEDDGLLVYLGRKDFQIKLHGYRI 363
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 5e-33
Identities = 116/432 (26%), Positives = 186/432 (43%), Gaps = 44/432 (10%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
R D AL++ ++++ + R +LAS L+ + L++ + + +E F
Sbjct: 12 RLPDATALVH--HDRTLTYAALSERVLALASGLRGLG-LARGERVAIYLDKRLETVTAMF 68
Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKL------AKLKHRTILID 167
G + P NP+ +++ + N + +S + L I++
Sbjct: 69 GAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLIIVG 128
Query: 168 SPEFDSMTMSWNSKHELDRAK----------VCQSDVAAIMYSSGTTGRVKGVMLTHRNL 217
P S + V SD+AAI+Y+SG+TGR KGV+L+HRNL
Sbjct: 129 DPAHASEGHPGEEPASWPKLLALGDADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNL 188
Query: 218 TAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAV 277
A A S A+ + +L +P YG A + T V+ + +LKA+
Sbjct: 189 VAG-AQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATVVLHDYLLPRDVLKAL 247
Query: 278 EEFRVTHAAVTPPIVVAMS--KGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVV 335
E+ +T A PP+ ++ + L L T + GA P + T+ S P
Sbjct: 248 EKHGITGLAAVPPLWAQLAQLDWPESAAPSLRYL-TNSGGAMP--RATLSRLRSFLPNAR 304
Query: 336 LVQAYGLTESTAGVFR--TVGPDEC-RRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGEL 392
L YGLTE+ FR + P+E RR S G+ E ++ + G PG+EGEL
Sbjct: 305 LFLMYGLTEA----FRSTYLPPEEVDRRPDSIGKAIPNAEVLVLRED-GSECAPGEEGEL 359
Query: 393 SIRGPTIMKGYVGEPEVTSATL-----------LPDGWMRTGDLCYIDEDGFLFIVDRLK 441
RG + GY +PE T+ LP+ + +GD DE+GFL+ V R
Sbjct: 360 VHRGALVAMGYWNDPEKTAERFRPLPPFPGELHLPELAVWSGDTVRRDEEGFLYFVGRRD 419
Query: 442 DLIKYKGYQVLP 453
++IK GY+V P
Sbjct: 420 EMIKTSGYRVSP 431
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 2e-32
Identities = 101/394 (25%), Positives = 156/394 (39%), Gaps = 57/394 (14%)
Query: 67 GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
+++ E N A+ L+ +S D +L +S E+ + + L G + N
Sbjct: 8 EQSLTYRELHDLANRFANVLRA-LGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALN 66
Query: 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDR 186
P+ T ++ + S +L+ +
Sbjct: 67 PLLTPQDLEHILDDSGA-------------------ALLVTEAD---------------- 91
Query: 187 AKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMP-YFH 245
D+A +Y+SGTTG+ KGVM HR+ A +FA + P +F+ F
Sbjct: 92 ------DIAYWLYTSGTTGKPKGVMHRHRDPLTF-AEAFARELLGLQPGDRIFSSSKLFF 144
Query: 246 IYGL----FFCFRAAALMETAVVM-QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS 300
YGL F + A +AV++ + +L + R T P + A+ + G+
Sbjct: 145 AYGLGNSLLFPLFSGA---SAVLLPGWPTPEAVLDLLARHRPTVLFGVPALYRALLESGA 201
Query: 301 TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRR 360
S+ L +A +L G TE +F + P R
Sbjct: 202 GSAPLFRSVRLCVSAGEALPAGLAERWAEATGIEIL-DGIGSTE-VLHIFISNRPGAARP 259
Query: 361 WGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWM 420
G+TGR G EA++VD G +P G G+L +RGP++ GY PE T TL DGW+
Sbjct: 260 -GTTGRPVPGYEARLVDES-GREVPAGTVGDLWVRGPSLAPGYWNLPEKTQRTL-RDGWL 316
Query: 421 RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPL 454
RTGD D DG+ R D+IK G V PL
Sbjct: 317 RTGDRFSRDADGWYRYQGRADDMIKVSGQWVSPL 350
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 3e-32
Identities = 88/344 (25%), Positives = 128/344 (37%), Gaps = 84/344 (24%)
Query: 157 AKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRN 216
L + ++ D S+ D+A I +SSG+TG KGV+LTH+N
Sbjct: 87 NILNNPFLITDRDSLLSLP----------------DDIAFIQFSSGSTGEPKGVILTHKN 130
Query: 217 LTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL----FFCFRAAA---LMETAVVMQRFD 269
L + + + + S V L MP H GL LM T + ++R
Sbjct: 131 LLTNI-EAIIEAAEITSEDVFLSWMPLTHDMGLIGFHLTPTALGINQYLMPTRLFIRRPL 189
Query: 270 LKMMLKAVEEFRVT--------------HAAVTPPIVVAMSKGGSTDGYDLSSLETVACG 315
L L + R T H I +DLSS+ + G
Sbjct: 190 L--WLDKASQHRATILSSPNFGYKYLLKHFKTEKII-----------DWDLSSVRLIFNG 236
Query: 316 AAPLGKDTIMAF-----ASKFPKVVLVQAYGLTESTAGV--------FRTV--------- 353
A P+ D F + YGL E+T V F+TV
Sbjct: 237 AEPISADLCEEFLEKMAPFGLRPNAMYPVYGLAEATLAVSFPKPGEPFKTVCLDRNHLKV 296
Query: 354 ---------GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYV 404
+ + G G E +IVD + G+ LP G + I+G + GY
Sbjct: 297 GVKIIEIDPKNSDAISFVEVGSPIDGCEIRIVD-DAGEVLPDRTIGHIQIKGDNVTSGYY 355
Query: 405 GEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKG 448
PE T ++ PDGW++TGDL ++ +G L I R KD+I G
Sbjct: 356 NNPEATKKSITPDGWLKTGDLGFL-RNGRLVITGRAKDIIIVNG 398
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 5e-32
Identities = 85/270 (31%), Positives = 126/270 (46%), Gaps = 21/270 (7%)
Query: 195 AAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRV----SPAVMLFTMPYFH----I 246
+++Y+SGTTG KGV T A++ + L T P +H
Sbjct: 155 QSMIYTSGTTGHPKGV--RRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNA 212
Query: 247 YGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSK--GGSTDGY 304
YGL RA L V+ RFD + +L+ +E R+TH + P + + + K Y
Sbjct: 213 YGL----RAGRLGGVLVLQPRFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKY 268
Query: 305 DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGST 364
D+SSL V AAP D A + V+ + YG TES A F T D G+
Sbjct: 269 DVSSLRHVIHAAAPCPADVKRAMIEWWGPVI-YEYYGSTESGAVTFAT-SEDALSHPGTV 326
Query: 365 GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMK-GYVGEPEVTSATLLPDGWMRTG 423
G+ + G E + VD E G LP G+ GE+ R Y +PE A + G++ +G
Sbjct: 327 GKAAPGAELRFVD-EDGRPLPQGEIGEIYSRIAGNPDFTYHNKPE-KRAEIDRGGFITSG 384
Query: 424 DLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
D+ Y+D DG+LF+ DR +D++ G + P
Sbjct: 385 DVGYLDADGYLFLCDRKRDMVISGGVNIYP 414
|
Length = 509 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 6e-32
Identities = 111/423 (26%), Positives = 172/423 (40%), Gaps = 40/423 (9%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
R D +A+I+ L S++E +R + LA+ L+ + + DT V N E I +F
Sbjct: 40 RYPDRIAVIDGERRL--SYAELDQRADRLAAGLRRLG-IKPGDTVLVQLPNVAEFYITFF 96
Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNP---VIAFATS---------SVVHKLAKLKH 161
+LL LGV A P + SE+ ++A S +V K L+H
Sbjct: 97 ALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRH 156
Query: 162 RTILIDSPEFDSMTMSWNSKHEL--DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHR---- 215
+ ++ + + L +VA S GTTG K + TH
Sbjct: 157 VIVAGEAEHPSVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYY 216
Query: 216 NLTAAVASSFASSPKR---VSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKM 272
++ A+ PA F + G+F T V+ ++
Sbjct: 217 SVRASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLA------GGTVVLAPDPSPEL 270
Query: 273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFP 332
+E VT A+ PP+ + + DLSSL + G A L A + P
Sbjct: 271 CFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGGARLSA----TLARRVP 326
Query: 333 KVV---LVQAYGLTESTAGVFRTVGPDECRRWGSTGR-LSAGLEAKIVDPETGDSLPPGK 388
V+ L Q +G+ E R P E + GR LS E ++VD + G+ + PG+
Sbjct: 327 AVLGCQLQQVFGMAEGLVNYTRLDDPPE-IIIHTQGRPLSPDDEVRVVDAD-GNPVAPGE 384
Query: 389 EGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKG 448
GEL RGP ++GY PE + DG+ R+GDL D DG+L + R+KD I G
Sbjct: 385 VGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGG 444
Query: 449 YQV 451
++
Sbjct: 445 EKI 447
|
Length = 542 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 8e-32
Identities = 95/400 (23%), Positives = 171/400 (42%), Gaps = 25/400 (6%)
Query: 70 VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
+++ E N + L+ + + + ++ ++ E P ++ + +G + P N +
Sbjct: 31 LTYGELQEEVNRWGNALRE-LGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLL 89
Query: 130 TESEISRQIQLSNPVIAFATSSVVHKLA-------KLKHRTILIDSPEF-DSMT-MSWNS 180
T + + S + + + L L+H ++ + S + +
Sbjct: 90 TPDDYRYYLNDSRARVLVISEELWEVLKPALQKDPHLRHVIVVGGAGPGALSYAQLIATA 149
Query: 181 KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFT 240
EL+ A D+A +YSSG+TGR KGV+ H ++ A ++A + ++ ++F+
Sbjct: 150 AEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDML-VTAEAYAKNVLGITEDDVVFS 208
Query: 241 MP-YFHIYGL----FFCFRAAALMETAVVM-QRFDLKMMLKAVEEFRVTHAAVTPPIVVA 294
F YGL +F A T V+M +R + +E ++ T P + A
Sbjct: 209 AAKLFFAYGLGNGLYFPLSVGA---TTVLMPERPTPDAVFATIERYKPTVFFGVPTLYAA 265
Query: 295 MSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354
M DLSSL L + + F + ++ G TE +F +
Sbjct: 266 MLAAPEKPERDLSSLRLCVSAGEALPAEIGYRWKELF-GLEILDGIGSTEMLH-IFLSNR 323
Query: 355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL 414
P ++G++G+ G E K+VD + G+ + G+ GEL +RG + GY E T T
Sbjct: 324 PGAV-KYGTSGKPVPGYEVKLVDED-GEEVADGEIGELWVRGDSSAAGYWNRREKTRETF 381
Query: 415 LPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPL 454
+ W RTGD Y DEDG+ + R D++K G V P
Sbjct: 382 V-GEWTRTGDKYYRDEDGYYWYCGRSDDMLKVSGIWVSPF 420
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 4e-31
Identities = 108/417 (25%), Positives = 172/417 (41%), Gaps = 25/417 (5%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
D A+I + TG V++ E R+N LA +++ L + D + N++ + +
Sbjct: 9 TTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLG-LKRGDHVAIFMENNLRYLEVCW 67
Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNP---VIAFATSSVVHKLAK----LKHRTILI 166
+ G+ + N T +E + + S + + A V L K ++HR +L
Sbjct: 68 AAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLD 127
Query: 167 ---DSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVM--LTHRNLTAA- 220
+ F + A +S ++YSSGTTGR KG+ L +
Sbjct: 128 GDGELEGFVGYAEAVAGLPATPIAD--ESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPL 185
Query: 221 -VASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEE 279
+ + S V L P +H L T +VM+ FD + L +EE
Sbjct: 186 PLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIRLGGTVIVMEHFDAEQYLALIEE 245
Query: 280 FRVTHAAVTPPIVVAMSK--GGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLV 337
+ VTH + P + M K D YDLSSLE AAP + ++
Sbjct: 246 YGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIH- 304
Query: 338 QAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP 397
+ Y TE G + G+ GR G + I+D + G LPPG+ G + G
Sbjct: 305 EYYAATEG-LGFTACDSEEWLAHPGTVGRAMFG-DLHILD-DDGAELPPGEPGTIWFEGG 361
Query: 398 TIMKGYVGEPEVTSATLLPDGWMRT-GDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
+ Y+ +P T+ PDG T GD+ Y+DEDG+L++ DR +I G + P
Sbjct: 362 RPFE-YLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYP 417
|
Length = 511 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 4e-31
Identities = 109/439 (24%), Positives = 184/439 (41%), Gaps = 66/439 (15%)
Query: 67 GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
G +++ E + +LA++LQ+ L+K ++ N ++ P+ ++L G ++ N
Sbjct: 46 GKAITYGELDELSRALAAWLQS-RGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVN 104
Query: 127 PVNTESEISRQ---------IQLSNPVIAFATSSVVHKLAKLKHRTILIDS--------- 168
P+ T E+ Q + L N FA ++V LAK + +++ S
Sbjct: 105 PLYTPRELEHQLKDSGAEAIVVLEN----FA-TTVQQVLAKTAVKHVVVASMGDLLGFKG 159
Query: 169 -------PEFDSMTMSWN--------------SKHELDRAKVCQSDVAAIMYSSGTTGRV 207
M +W+ ++ K+ DVA + Y+ GTTG
Sbjct: 160 HIVNFVVRRVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVS 219
Query: 208 KGVMLTHRNLTAAVASSFA------SSPKRVSPAVMLFTMPYFHIYGLFFCF----RAAA 257
KG L HRN+ A V A R + +P +HI+ L C R
Sbjct: 220 KGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTGG 279
Query: 258 LMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAA 317
++ D+ +K +++++V + A+ D D S L G
Sbjct: 280 R--NILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANGGGM 337
Query: 318 PLGKDTIMAFASKFPKVV---LVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAK 374
+ + A ++ ++ + + YGL+E T+ V D G+ G E
Sbjct: 338 AVQR----PVAERWLEMTGCPITEGYGLSE-TSPVATCNPVDATEFSGTIGLPLPSTEVS 392
Query: 375 IVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFL 434
I D + G+ LP G+ GE+ IRGP +M GY P+ T+ + DG+ RTGD+ +DE G+
Sbjct: 393 IRD-DDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYT 451
Query: 435 FIVDRLKDLIKYKGYQVLP 453
IVDR KD+I G+ V P
Sbjct: 452 KIVDRKKDMILVSGFNVYP 470
|
Length = 557 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 8e-31
Identities = 86/294 (29%), Positives = 129/294 (43%), Gaps = 55/294 (18%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFF 251
D+A I+Y+SGTTG+ KGVML+ A A +L +P HI
Sbjct: 137 EDLATIVYTSGTTGQPKGVMLSFGAFAFA-AQGTIEIIGLTPNDRLLSYLPLAHIA---- 191
Query: 252 CFRAAALMETAVV-----------MQRF--DLKM----MLKAV----EEFRV-THAAVTP 289
++E + + F DL+ + +V +F+ A + P
Sbjct: 192 ---ERVIVEGGSLYSGAEVFFVESLDTFAADLQRARPTVFFSVPRLWTKFQQGILAKLPP 248
Query: 290 ---------PIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAY 340
PI+ ++ K G L GAAP+ ++A+ K + + + Y
Sbjct: 249 EKLNLLLKIPILSSLVKKKILKGLGLDQARLAGSGAAPMPPA-LIAWYRKL-GLPICEGY 306
Query: 341 GLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIM 400
G+TE+ A + T+ RR G+ G+ G+E KI + +GE+ IR P +M
Sbjct: 307 GMTENFA--YSTLNYPGDRRIGTVGKPIPGVELKISE-----------DGEILIRSPGLM 353
Query: 401 KGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKY-KGYQVLP 453
GY +PE T+ DGW+ TGD IDEDGFL I R+K+L K KG V P
Sbjct: 354 SGYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKITGRVKELFKTSKGKYVAP 407
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 5e-29
Identities = 111/410 (27%), Positives = 162/410 (39%), Gaps = 51/410 (12%)
Query: 67 GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
G R +++E R + A L + + D ++ N IE ++ LG I P N
Sbjct: 44 GTRWTYAEAARAAAAAAHALA-AAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPIN 102
Query: 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KHRTILIDSPEFDSMTMSWN- 179
++ ++ S + ++++ L L+D+P S+ W+
Sbjct: 103 TALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVSVPAGWST 162
Query: 180 -----SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTH-------RNLTAAVASSFAS 227
A V D AAI+Y+SGTTG KGV H RN +
Sbjct: 163 APLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLE----- 217
Query: 228 SPKRVSPAVMLFT-MPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVT--- 283
+ +L+T +P FH L F+A T V+ RF AV T
Sbjct: 218 ----IGADDVLYTTLPLFHTNALNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTY 273
Query: 284 --HAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYG 341
A V I+++ S + + VA G AF +F V L+ YG
Sbjct: 274 LLGAMV--SILLSQPARESDRAHRV----RVALGPGVPAAL-HAAFRERF-GVDLLDGYG 325
Query: 342 LTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP---T 398
TE+ V +R GS GRL+ G EA++VD E LP G+ GEL +R
Sbjct: 326 STETNF-VIAVTHGS--QRPGSMGRLAPGFEARVVD-EHDQELPDGEPGELLLRADEPFA 381
Query: 399 IMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKG 448
GY G PE T + W TGD D DG+ VDR+KD I+ +G
Sbjct: 382 FATGYFGMPEKTVEA-WRNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRG 430
|
Length = 542 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 5e-29
Identities = 87/302 (28%), Positives = 124/302 (41%), Gaps = 65/302 (21%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA---SSPKRVSPAVMLFTMPYFHIYGL 249
D A ++ +SG+TG K V+LTHRN+ A A + +P VS L MP H+ G+
Sbjct: 168 DPALLLLTSGSTGVPKCVVLTHRNILARSAGTVQVNGFTPDDVS----LNWMPLDHVGGI 223
Query: 250 FFC-FRAAALM------ETAVVMQR----FDLKMMLKAVEEFRVTHAAVT--PPIVVAM- 295
R L T ++ DL ++ +RVT +T P A+
Sbjct: 224 VMLHLRDVYLGCQQIHVPTDYILADPLRWLDL------IDRYRVT---ITWAPNFAFALL 274
Query: 296 ---SKGGSTDGYDLSSLETVACGAAPLGKDTIMAF-----ASKFPKVVLVQAYGLTESTA 347
+ +DLSSL + + TI F P + A+G++E+ +
Sbjct: 275 NDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRPAFGMSETCS 334
Query: 348 GVFRTVGPDECRRWG-------------------------STGRLSAGLEAKIVDPETGD 382
GV + G G GR G+ +IVD E G
Sbjct: 335 GVTYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIVD-EDGA 393
Query: 383 SLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKD 442
LP G+ G L +RGPT+ GY PE + DGW RTGDL ++ DG L I R KD
Sbjct: 394 LLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFLH-DGRLTITGREKD 452
Query: 443 LI 444
+I
Sbjct: 453 MI 454
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 8e-29
Identities = 122/440 (27%), Positives = 168/440 (38%), Gaps = 100/440 (22%)
Query: 67 GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
R +++E R LAS L + + DT VL N + +F + G ++ N
Sbjct: 41 DRRRTWAETYARCRRLASALARRG-IGRGDTVAVLLPNIPAMVEAHFGVPMAGAVL---N 96
Query: 127 PVNTESEISRQIQLSNPVIAF--------------ATSSVVHK-LAKLKHRTIL---IDS 168
+NT +L IAF + V + LA L L +D
Sbjct: 97 TLNT--------RLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLVIDVDD 148
Query: 169 PEFDSMTMSWNSKHELDRAKVCQS--------------DVAAIMYSSGTTGRVKGVMLTH 214
PE+ LD S D A+ Y+SGTTG KGV+ H
Sbjct: 149 PEYPGGR----FIGALDYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHH 204
Query: 215 RN--LTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKM 272
R L A PK V L+T+P FH G F + AA T V +++ D K+
Sbjct: 205 RGAYLNALSNILAWGMPKH---PVYLWTLPMFHCNGWCFPWTVAARAGTNVCLRKVDPKL 261
Query: 273 MLKAVEEFRVTH--AAVTPPIVVAM---SKGGSTDGYDLSSLETVACGAAP----LGKDT 323
+ + E VTH A PIV++ + G D VA GAAP + K
Sbjct: 262 IFDLIREHGVTHYCGA---PIVLSALINAPAEWRAGIDHPVHAMVA-GAAPPAAVIAKME 317
Query: 324 IMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDE-CRRWGSTGRLSAGLEAKI------- 375
+ F L YGLTE T GP C L A++
Sbjct: 318 EIGFD-------LTHVYGLTE-------TYGPATVCAWQPEWDALPLDERAQLKARQGVR 363
Query: 376 ---------VDPETGDSLPPGKE--GELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGD 424
+DP+T +P E GE+ RG +MKGY+ P+ T GW TGD
Sbjct: 364 YPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEA-FAGGWFHTGD 422
Query: 425 LCYIDEDGFLFIVDRLKDLI 444
L + DG++ I DR KD+I
Sbjct: 423 LAVLHPDGYIKIKDRSKDII 442
|
Length = 545 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 9e-29
Identities = 86/405 (21%), Positives = 154/405 (38%), Gaps = 23/405 (5%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
D VAL+ L +++E R N LA L + + +T +L+ S+E+ + ++L
Sbjct: 242 DAVALVRGGQQL--TYAELDARANRLARLLIS-LGVGPGETVAILADRSLELVVALLAVL 298
Query: 117 SLG---VIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDS 173
G V + P P ++ ++ S P + + + L + +D
Sbjct: 299 KAGAAYVPLDPLYPAER---LAYILEDSRPTLLLTQAHLRVDDVGL--PGLALDDALS-- 351
Query: 174 MTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVS 233
+ + +A I+Y+SG+TG+ KGV + HR L + + A
Sbjct: 352 ----EIPDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDAD 407
Query: 234 PAVMLFTMPYF--HIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPI 291
V+ F ++ +F A + A + + D +L+ +E +T + P +
Sbjct: 408 DRVLALASLSFDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLL 467
Query: 292 VVAMSKGG--STDGYDLSSLETVACGAAPLGKDTI-MAFASKFPKVVLVQAYGLTESTAG 348
+ + L + G L + L+ YG TE+T
Sbjct: 468 LRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLD 527
Query: 349 VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPE 408
E GR A + I+D + LP G GEL I G + GY+ P+
Sbjct: 528 APSFPISAELESRVPIGRPVANTQLYILD-QGLRPLPLGVPGELYIAGLGLALGYLNRPD 586
Query: 409 VTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
+T+ + RTGDL DG L + R +K +G+++
Sbjct: 587 LTAERFIALRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIEL 631
|
Length = 642 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 2e-28
Identities = 102/406 (25%), Positives = 168/406 (41%), Gaps = 45/406 (11%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
R S+ E R + +A L + + D N E LY + +G +++P P+
Sbjct: 53 RFSYRELDCRVDRIAVGL-ARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPI 111
Query: 129 NTESEISRQIQLSNPVIAFATSSVV---HKLAKLKH--------------RTILI---DS 168
E E+S ++ A S V H R +++ D
Sbjct: 112 FRERELSF-------MLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDG 164
Query: 169 PE-FDSMTMSWNSKHELDRAKVCQ------SDVAAIMYSSGTTGRVKGVMLTHRNLTAAV 221
+ FD + M+ D A + DV ++Y+SGTTG KGVM T L + +
Sbjct: 165 DDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNI 224
Query: 222 ASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR-FDLKMMLKAVEEF 280
+A + V+L P H G + ++ V+Q ++ + + E
Sbjct: 225 HP-YAERLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRET 283
Query: 281 RVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAY 340
VT + P + + + G + SL T C AP+ ++ A + ++V A+
Sbjct: 284 GVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPI-PGILVERAWELLGALIVSAW 342
Query: 341 GLTESTAGVFRTVGPDECRRWGST--GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPT 398
G+TE+ G PD+ ST GR G+E K++D G L G+ G L +RG +
Sbjct: 343 GMTEN--GAVTVTEPDDALEKASTTDGRPLPGVEVKVIDAN-GAKLSQGETGRLLVRGCS 399
Query: 399 IMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLI 444
GY+ P + S +GW TGDL + D +G++ I R KD+I
Sbjct: 400 NFGGYLKRPHLNSTD--AEGWFDTGDLAFQDAEGYIRINGRSKDVI 443
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 4e-28
Identities = 104/457 (22%), Positives = 162/457 (35%), Gaps = 49/457 (10%)
Query: 32 PPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTR 91
P DA D ++SL D VALI+ +S +E + LA++L
Sbjct: 1 TPHDA-APRADTLASLLDAHARARPDAVALIDE--DRPLSRAELRALVDRLAAWLAAQG- 56
Query: 92 LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVI-----A 146
+ + D V N IE +L+ + LG + N E++ +
Sbjct: 57 VRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPG 116
Query: 147 FATSSVVHKLAKLKH-------RTILIDS----------------PEFDSMTMSWNSKHE 183
F LA + ++D +
Sbjct: 117 FKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPGARVQLFALPDPAPPAAAGER 176
Query: 184 LDRAKVCQSDVAAIMYS-SGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSPAVMLF 239
D A++++ SGTT K V+ L A+A ++ P AV+L
Sbjct: 177 AA-----DPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPG----AVLLA 227
Query: 240 TMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG 299
+P+ ++G A A V FD +A+ RVTH ++ +
Sbjct: 228 ALPFCGVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA 287
Query: 300 STDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV-FRTVGPDEC 358
D S + + A A V L YG +E A V +
Sbjct: 288 GERA-DFPSARLFGFASFAPALGELAALARA-RGVPLTGLYGSSEVQALVALQPATDPVS 345
Query: 359 RRWGSTGRL-SAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD 417
R GR S + DP+ G LP G+ GE+ IR P++M+GY+ P+ T+ L D
Sbjct: 346 VRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDD 405
Query: 418 GWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPL 454
G+ RTGDL Y DG R+ D ++ G+ V P
Sbjct: 406 GYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPA 442
|
Length = 540 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 9e-28
Identities = 78/275 (28%), Positives = 121/275 (44%), Gaps = 32/275 (11%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPY---FHIYG 248
D A ++Y+SG+TG+ KGV++THRN+ + + A R V+ F I
Sbjct: 99 DDPAYVIYTSGSTGKPKGVVITHRNICNFLRAEGAILGIRPGDRVLQF-ASIAFDVSILE 157
Query: 249 LFFCFRAAALMETAVVMQRFDLKMML-KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS 307
+F A T V+ L + + RVT A +TP S D D+
Sbjct: 158 IFTTLLAGG---TLVIPPEELRLEDLAEFLNRLRVTVAHLTP------SLLALLDPEDVP 208
Query: 308 SLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTEST--AGVFRTVGPDECRRWGSTG 365
SL T+ G + + ++ L+ YG TE+T A R + P + + G
Sbjct: 209 SLRTLILGGEACPQALVDRWS---KPRRLLNTYGPTEATVTATASR-LTPGKPV---NIG 261
Query: 366 RLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWM----- 420
R ++DP+ +P G GEL I GP + +GY+ PE+T+ +PD +
Sbjct: 262 RPLPNYTCWVLDPDLEPLVPIGAVGELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPG 321
Query: 421 ----RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQV 451
RTGDL EDG L + R D +K +G ++
Sbjct: 322 GRIYRTGDLVRYLEDGSLEFLGRKDDQVKIRGQRI 356
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 9e-28
Identities = 111/418 (26%), Positives = 174/418 (41%), Gaps = 37/418 (8%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
R D AL++ GLR+++SE R +A+ L + A V++ NS++ I
Sbjct: 13 RAPDACALVDPARGLRLTYSELRARVEGVAARLHARGVRPQQRVA-VVAPNSVDAVIALL 71
Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDS 173
+L LG + + NP +EI+ I+ ++ V + I
Sbjct: 72 ALHRLGAVPALMNPRLKPAEIAELIKRGE------MTAAVIAVDAQVMDAIFQSGSGVRV 125
Query: 174 MTMSWNSKHELDRAKVCQS-------------DVAAIMYSSGTTGRVKGVMLTHRNLTAA 220
+ + +L +S A + Y+SGTTG KG ++ R +
Sbjct: 126 LALG-----DLVGLGEPESAGPPIEDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESR 180
Query: 221 VASSFASSPKRV-SPAVMLFTMPYFHIYGLFFCFRAA-ALMETAVVMQRFDLKMMLKAVE 278
V + R V+L MP +H+ G F AA AL T VV++ FD LK +E
Sbjct: 181 VLFMSTQAGLRHGRHNVVLGLMPLYHVIGFFAVLVAALALDGTYVVVEEFDPADALKLIE 240
Query: 279 EFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ 338
+ RVT TP + A++ L SLE V A + D ++ ++ V
Sbjct: 241 QERVTSLFATPTHLDALAAAAEGAPLKLDSLEHVTFAGATM-PDAVLERVNQHLPGEKVN 299
Query: 339 AYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDS--LPPGKEGELSI-R 395
YG TE+ ++ R G+ R E +IV LP G+EGEL +
Sbjct: 300 IYGTTEAMNSLY-----MRDPRTGTEMRPGFFSEVRIVRIGGSPDEALPNGEEGELVVAA 354
Query: 396 GPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
GY+ +P+ T A L DGW RT D+ +D G + I+ R+ D+I G + P
Sbjct: 355 ADATFTGYLNQPQAT-AEKLQDGWYRTSDVAVVDPSGTVRILGRVDDMIISGGENIHP 411
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 1e-27
Identities = 79/276 (28%), Positives = 121/276 (43%), Gaps = 24/276 (8%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYF--HIYGL 249
D+A ++Y+SG+TGR KGVM+ HR L +A V+ F F ++ +
Sbjct: 93 DDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLTAGDRVLQFASFSFDASVWEI 152
Query: 250 FFCFRAAALME--TAVVM---QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY 304
F L+ T V+ D + + + + E R+T + P ++ A+ +
Sbjct: 153 F-----PPLLSGATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLRALLDAL--EPA 205
Query: 305 DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV--FRTVGPDECRRWG 362
L SL V G L + + + FP LV AYG TE+T V D
Sbjct: 206 ALPSLRLVIVGGEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSV 265
Query: 363 STGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWM-- 420
GR A ++D E +P G GEL I G + +GY+ PE+T+ +PD +
Sbjct: 266 PIGRPIANTRVYVLD-EDLRPVPVGVPGELYIGGAGVARGYLNRPELTAERFVPDPFGGP 324
Query: 421 -----RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQV 451
RTGDL DG L + R D +K +GY++
Sbjct: 325 GERLYRTGDLARWLPDGNLEFLGRADDQVKIRGYRI 360
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 2e-27
Identities = 111/449 (24%), Positives = 178/449 (39%), Gaps = 77/449 (17%)
Query: 48 RATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIE 107
+ L W DDD I +F + +N A++ + + + K DT + E
Sbjct: 33 KLALIWCDDDGEEKI-------FTFGDLKDYSNKAANFFKALG-IGKGDTVMLTLKRRYE 84
Query: 108 IPILYFSLLSL---GVIISPANPVNTESEISRQIQLSN----------PVIAFATSSVVH 154
+FS+L+L G I PA + T +I +I+ + V +
Sbjct: 85 ---FWFSMLALHKIGAIAIPATHMLTAKDIVYRIEAAGIKMIVCIGEDGVPEHIDEAAPE 141
Query: 155 KLAKLKHRTILIDSPEFDSMTMSWNSKHEL------------DRAKVCQSDVAAIMYSSG 202
+ + PE W + C D+ + ++SG
Sbjct: 142 CGSPTLLVLVGDPVPE------GWIDFDKEIENASPDFERPTGNDATCNDDILLVYFTSG 195
Query: 203 TTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMP--------YFHIYGLFFCFR 254
TTG K M+ H + A + V + T+ + +YG +
Sbjct: 196 TTGMPK--MVEHDHTYPLGHIVTAKYWQNVKEGGLHLTVADTGWGKAVWGKLYGQWIA-- 251
Query: 255 AAALMETAVV---MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLET 311
AV +FD K +L+ +E++ VT P I + K + YDLSSL
Sbjct: 252 -----GAAVFVYDYDKFDPKNLLEKIEKYGVTTFCAPPTIYRFLIKEDLSK-YDLSSLRY 305
Query: 312 VACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECR--RWGSTGRLSA 369
PL + F + + L++ +G TE+T T+ + GS G+ S
Sbjct: 306 CTTAGEPLNPEVFNTF-KEKTGIKLMEGFGQTETTL----TIATFPWMEPKPGSMGKPSP 360
Query: 370 GLEAKIVDPETGDSLPPGKEGELSIR----GPTIM-KGYVGEPEVTSATLLPDGWMRTGD 424
G + I+DP+ G S G+EGE+ IR P + GY +PE T+ DG+ TGD
Sbjct: 361 GYDIDIIDPD-GKSCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVWH-DGYYHTGD 418
Query: 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
++DEDG+L+ V R DLIK GY++ P
Sbjct: 419 TAWMDEDGYLWFVGRADDLIKSSGYRIGP 447
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-27
Identities = 82/310 (26%), Positives = 131/310 (42%), Gaps = 42/310 (13%)
Query: 183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMP 242
+D + + D+A + +SG+TG K V +TH NL A + F ++ V VM+ +P
Sbjct: 143 PIDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLP 202
Query: 243 YFHIYGL--FF----CFRAAALMETAVVMQRFDLKMMLKAVEEFR--VTHAAVTPPIVVA 294
FH G+ F F A + T + R L + + ++R +T A ++A
Sbjct: 203 LFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWA-ELISKYRGTMTAAPNFAYALLA 261
Query: 295 --MSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFAS-----KFPKVVLVQAYGLTESTA 347
+ + +DLSSL GA P+ + ++ AYG+ E+T
Sbjct: 262 RRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATL 321
Query: 348 GV-FRTVG-----------------------PDECRRWGSTGRLSAGLEAKIVDPETGDS 383
V F G RR + G GLE ++VD E G
Sbjct: 322 AVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQV 380
Query: 384 LPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDL 443
LPP G + +RG ++ GY+ + DGW+ TGDL Y+ E+G + + R+KD+
Sbjct: 381 LPPRGVGVIELRGESVTPGYL-TMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDV 439
Query: 444 IKYKGYQVLP 453
I G + P
Sbjct: 440 IIMAGRNIYP 449
|
Length = 545 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 5e-27
Identities = 119/424 (28%), Positives = 184/424 (43%), Gaps = 64/424 (15%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
R ++ + R LA+ L ++ ++KND VL+ N+ + ++F++ G +++P N
Sbjct: 39 RFTWPQTYDRCCRLAASLISLN-ITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTR 97
Query: 129 NTESEISRQIQLSNPVIAFATSS-------VVHKL----AKLKHRTILIDSPEFDSMTMS 177
+ I+ ++ + P I F S V+H L + L I I +F S
Sbjct: 98 LDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSS 157
Query: 178 WNSKHE--LDRAKVCQSDVAAIM------------YSSGTTGRVKGVMLTHRNLTAAVAS 223
+E + R + S VA + Y+SGTT KGV+++HR + S
Sbjct: 158 EELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLS 217
Query: 224 SFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVT 283
+ P V L+T+P FH G F + AA T+V M+ + K +E VT
Sbjct: 218 AIIGWEMGTCP-VYLWTLPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVT 276
Query: 284 HAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ----- 338
H P + + KG S D S V G +P P LV+
Sbjct: 277 HMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSP-------------PPAALVKKVQRL 323
Query: 339 ------AYGLTESTAGVFRTVGPDECRRWGSTGRLS----AGL------EAKIVDPETGD 382
AYGLTE+T V DE R ++ G+ + + + ET +
Sbjct: 324 GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLADVDVKNKETQE 383
Query: 383 SLP-PGKE-GELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRL 440
S+P GK GE+ I+G +IMKGY+ P+ TS GW+ TGD+ I DG + I DR
Sbjct: 384 SVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEA-FKHGWLNTGDVGVIHPDGHVEIKDRS 442
Query: 441 KDLI 444
KD+I
Sbjct: 443 KDII 446
|
Length = 579 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 113 bits (283), Expect = 6e-27
Identities = 93/280 (33%), Positives = 141/280 (50%), Gaps = 32/280 (11%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFAS---SPKRVSPAVMLFTMPYFHIYGL 249
D A IM++ GTTG K V TH N+ ++V + SP+ + AVM P +H +GL
Sbjct: 177 DDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVM----PLYHGHGL 232
Query: 250 FFCFRAAALMET-----AVVMQ---RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST 301
AAL+ T AV++ RF ++ T P I + + +T
Sbjct: 233 I-----AALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAAT 287
Query: 302 D--GYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT----VGP 355
+ G ++L + +APL +T A ++F V V A+G+TE+T V T +G
Sbjct: 288 EPSGRKPAALRFIRSCSAPLTAETAQALQTEFAAPV-VCAFGMTEATHQVTTTQIEGIGQ 346
Query: 356 DECRRW--GSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSAT 413
E G GR S G + +IV + G LP G GE+ +RG T+++GY+G+P +T+A
Sbjct: 347 TENPVVSTGLVGR-STGAQIRIVGSD-GLPLPAGAVGEVWLRGTTVVRGYLGDPTITAAN 404
Query: 414 LLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
DGW+RTGDL + G L I R+K+LI G ++ P
Sbjct: 405 -FTDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISP 443
|
Length = 534 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 3e-26
Identities = 110/439 (25%), Positives = 170/439 (38%), Gaps = 64/439 (14%)
Query: 64 SVTGLRV-SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVII 122
+++G R + EF SLA+ L + L D + + NS ++ G I+
Sbjct: 26 TISGNRRRTGHEFVDGVLSLAAGLLRLG-LRNGDVVAIAALNSDLYLEWLLAVACAGGIV 84
Query: 123 SPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTI-------LIDSP------ 169
+P N + E + L PV+ + +L++ + ++SP
Sbjct: 85 APLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFI 144
Query: 170 ---EFDSMTMSWN---SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLT----A 219
F + M ELD A D I ++SGTTGR KGV ++H L A
Sbjct: 145 FLNSFLTTEMLKQRALGTTELDYAWA-PDDAVLICFTSGTTGRPKGVTISHSALIVQSLA 203
Query: 220 AVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETA--VVMQRFDLKMMLKAV 277
+A V L T P HI GL A LM A V++ +FD K L+A+
Sbjct: 204 KIAIVGYGEDD-----VYLHTAPLCHIGGLSSAL--AMLMVGACHVLLPKFDAKAALQAI 256
Query: 278 EEFRVTHAAVTPPIVVAMSKGGSTDGYDLS--SLETVACGAAPLGKDTIMAFASKFPKVV 335
++ VT P ++ + S+ + G L + FP
Sbjct: 257 KQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAK 316
Query: 336 LVQAYGLTES------------TAGVFRTVGPDECRRWGSTGRLSAG---------LEAK 374
L AYG+TE+ T + + S+ G +E K
Sbjct: 317 LFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELK 376
Query: 375 IVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFL 434
I E + G + RGP +M GY G+ T++ L DGW+ TGD+ +ID+ G L
Sbjct: 377 IGLDE------SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNL 430
Query: 435 FIVDRLKDLIKYKGYQVLP 453
+++ R D IK G V P
Sbjct: 431 WLIGRSNDRIKTGGENVYP 449
|
Length = 563 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 4e-26
Identities = 83/270 (30%), Positives = 125/270 (46%), Gaps = 25/270 (9%)
Query: 195 AAIMYSSGTTGRVKGVMLTHR-NLTAAVASSFASSPKRVSPAVMLFTMPYFHI--YGLFF 251
A + Y+SGTTG KGV+ +HR N+ A+ ++ + + ML +P FH +G+ F
Sbjct: 180 AGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIAF 239
Query: 252 CFRAAALMETAVVM--QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSL 309
+A M T +VM + D + + ++ +VT A P + + + + +G L L
Sbjct: 240 ---SAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHL 296
Query: 310 ETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES----TAGV----FRTVGPDECRRW 361
+ V CG + + + I AF V + A+G+TE T F + D
Sbjct: 297 KMVVCGGSAMPRSMIKAFEDM--GVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDV 354
Query: 362 GST-GRLSAGLEAKIVDPETGDSLP-PGKE-GELSIRGPTIMKGYVGEPEVTSATLLPDG 418
G G+E KI D G LP GK G L +RGP + Y V L DG
Sbjct: 355 LQKQGYPPFGVEMKITDDA-GKELPWDGKTFGRLKVRGPAVAAAYYR---VDGEILDDDG 410
Query: 419 WMRTGDLCYIDEDGFLFIVDRLKDLIKYKG 448
+ TGD+ ID G++ I DR KD+IK G
Sbjct: 411 FFDTGDVATIDAYGYMRITDRSKDVIKSGG 440
|
Length = 542 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 1e-25
Identities = 114/422 (27%), Positives = 177/422 (41%), Gaps = 40/422 (9%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
R D +A+I + S+ E +R ++LA+ L + + + DTA V N E I++F
Sbjct: 35 RYPDAIAIICGNR--QWSYRELDQRADNLAAGLTKLG-IKQGDTAVVQLPNIAEFYIVFF 91
Query: 114 SLLSLGVIISPANPVNTESEI---SRQIQLSNPVI----------AFATSSVVHKLAKLK 160
+LL LGV A + +SE+ + QI+ + +I FA + KL L
Sbjct: 92 ALLKLGVAPVLALFSHRKSELTAYASQIEPALYIIDRAHSLFDYDDFA-RQLQSKLPTL- 149
Query: 161 HRTILIDSPEFDSMTMSW-NSKH-ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLT 218
R I++ ++ W S + +VA S G+TG K + TH +
Sbjct: 150 -RNIIVAGQTGEAELFLWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYY 208
Query: 219 AAVASSFASSPKRVSPAVMLFTMPYFHIY-----GLFFCFRAAALMETAVVMQRFDLKMM 273
+V S L +P H Y G F A V+
Sbjct: 209 YSVRRS-VEICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGG---CVVLAPDPSPTDC 264
Query: 274 LKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPK 333
+E +VT A+ PP V + S DLSSL+ + G A A A + P
Sbjct: 265 FPLIERHKVTVTALVPPAVALWMQAASKSRADLSSLKLLQVGGAKFSA----AAARRVPA 320
Query: 334 VV---LVQAYGLTESTAGVFRTVGPDECRRWGSTGR-LSAGLEAKIVDPETGDSLPPGKE 389
V L Q +G+ E R P E + + GR +S E ++VD + G+ + PG+
Sbjct: 321 VFGCQLQQVFGMAEGLVNYTRLDDPAE-IIFTTQGRPMSPDDEVRVVD-DHGNPVAPGET 378
Query: 390 GELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGY 449
G L RGP +GY PE +A +G+ TGDL + +G++ +V R KD I G
Sbjct: 379 GMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGE 438
Query: 450 QV 451
++
Sbjct: 439 KI 440
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 2e-25
Identities = 76/265 (28%), Positives = 117/265 (44%), Gaps = 20/265 (7%)
Query: 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAA 256
++ +SGTTG KG + A +A + P R L P FH G A
Sbjct: 212 VILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAG-ETTLLPAPMFHATGWAHLTLAM 270
Query: 257 ALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVA--MSKGGSTDG-YDLSSLETVA 313
AL T V+ +RFD + L+ + + + T A V P++++ + G YD SSL+ +
Sbjct: 271 ALGSTVVLRRRFDPEATLEDIAKHKAT-ALVVVPVMLSRILDLGPEVLAKYDTSSLKIIF 329
Query: 314 CGAAPLGKDTIMAFASKFPKVVLVQAYGLTE-STAGVFRTVGPDECRRWGST-GRLSAGL 371
+ L + F V L YG TE + A + P++ T GR G+
Sbjct: 330 VSGSALSPELATRALEAFGPV-LYNLYGSTEVAFATI---ATPEDLAEAPGTVGRPPKGV 385
Query: 372 EAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVG--EPEVTSATLLPDGWMRTGDLCYID 429
KI+D E G+ +P G G + + +GY + ++ DG + +GD+ Y D
Sbjct: 386 TVKILD-ENGNEVPRGVVGRIFVGNGFPFEGYTDGRDKQII------DGLLSSGDVGYFD 438
Query: 430 EDGFLFIVDRLKDLIKYKGYQVLPL 454
EDG LF+ R D+I G V P
Sbjct: 439 EDGLLFVDGRDDDMIVSGGENVFPA 463
|
Length = 549 |
| >gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-24
Identities = 122/485 (25%), Positives = 198/485 (40%), Gaps = 94/485 (19%)
Query: 25 LRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLAS 84
LR L P+DA + +DY + D + ++T +S+ RRT ++A
Sbjct: 7 LRERASLQPDDAAFTFIDY-----------EQDPAGVAETLT-----WSQLYRRTLNVAE 50
Query: 85 YLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVI---ISPANPVNTESEISRQIQLS 141
L+ S D A +L+ +E + + L G+I +S + +S ++ +
Sbjct: 51 ELRRHG--STGDRAVILAPQGLEYIVAFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDT 108
Query: 142 NPVIAFATSSVVHKLAKLKHR--------TILIDSPEFDSMTMSWNSKHELDRAKVCQSD 193
+P + TS+VV + + I +D + DS D
Sbjct: 109 SPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLLDLDS-------PRGSDARPRDLPS 161
Query: 194 VAAIMYSSGTTGRVKGVMLTHRNLTA----AVASSFASSPKRVSPAVMLFT-MPYFH--- 245
A + Y+SG+T GVM++HRN+ A ++ F + P + + +P++H
Sbjct: 162 TAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMG 221
Query: 246 -IYGLF---FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST 301
+ G+ A L +QR M L A AA +A+ K
Sbjct: 222 LVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLA-SNPHAFSAAPNFAFELAVRKTSDD 280
Query: 302 D--GYDLSSLETVACGAAPLGKDTIMAFASKF-----PKVVLVQAYGLTESTAGVF---R 351
D G DL + + G+ + T+ FA +F + + +YGL E+T V+ R
Sbjct: 281 DMAGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEAT--VYVATR 338
Query: 352 TVG---------PDE--------CRRWGSTGRLSAGL----EAKIVDPETGDSLPPGKEG 390
G ++ C G T +S G +IVDP+T P G G
Sbjct: 339 EPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPRSPTVRIVDPDTCIECPAGTVG 398
Query: 391 ELSIRGPTIMKGYVGEPEVT----SATLL------PDG-WMRTGDLCYIDEDGFLFIVDR 439
E+ + G + GY +PE T ATL+ P+G W+RTGDL +I E LFIV R
Sbjct: 399 EIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFISEGE-LFIVGR 457
Query: 440 LKDLI 444
+KDL+
Sbjct: 458 IKDLL 462
|
Length = 578 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 2e-24
Identities = 84/262 (32%), Positives = 115/262 (43%), Gaps = 13/262 (4%)
Query: 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA---VMLFTMPYFHIY 247
DVA I+++SGT KGV LTH NL A + K SP VM+ +P FH Y
Sbjct: 182 PEDVAVILFTSGTEKLPKGVPLTHANLLANQRACL----KFFSPKEDDVMMSFLPPFHAY 237
Query: 248 GLFFCFRAAALMETAVVMQRFDL--KMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD 305
G C L VV L K +++ ++E +VT TP + K
Sbjct: 238 GFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESC 297
Query: 306 LSSLETVACGAAPLGKDTIMAFASK-FPKVVLVQAYGLTESTAGVFRTVGPDECRRWGST 364
L SL V G KD++ A K FP + L Q YG TE + V + +
Sbjct: 298 LPSLRFVVIGGDAF-KDSLYQEALKTFPHIQLRQGYGTTECSP-VITINTVNSPKHESCV 355
Query: 365 GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGE-PEVTSATLLPDGWMRTG 423
G G++ IV ET + G+ G + RG ++ GY+GE L + W TG
Sbjct: 356 GMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTG 415
Query: 424 DLCYIDEDGFLFIVDRLKDLIK 445
DL Y+D G LF+ RL +K
Sbjct: 416 DLGYVDRHGELFLKGRLSRFVK 437
|
Length = 539 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-24
Identities = 80/264 (30%), Positives = 127/264 (48%), Gaps = 18/264 (6%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSP-AVMLFTMPYFHIYGL-- 249
DVA I ++SGTTG KG M HR++ A +F + +P V + + P +GL
Sbjct: 148 DVALIGFTSGTTGLPKGTMHFHRDILAI-CDAFPRHVLQPTPDDVFIGSPPLAFTFGLGG 206
Query: 250 --FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS 307
F R A +AV++++ ++LKA++E R T P AM +D+S
Sbjct: 207 LVLFPLRFGA---SAVLLEQATPPLLLKAIQEHRATILFTAPTAYRAMLIK--VKAFDIS 261
Query: 308 SLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRL 367
SL L + + + ++ G TE +F + +E + G+TG+
Sbjct: 262 SLRKCVSAGETLPAKVWQDWYER-TGLKIIDGIGATEMLH-IFIS-ANEENAKPGATGKP 318
Query: 368 SAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCY 427
G EA+IVD + G+ +P G+ G L++RGPT + Y+ + + DGW TGD+
Sbjct: 319 VPGYEARIVD-DQGNEVPRGEAGRLAVRGPTGCR-YLDDERQQEY--VRDGWNVTGDIFR 374
Query: 428 IDEDGFLFIVDRLKDLIKYKGYQV 451
DEDG+ V R D+I GY +
Sbjct: 375 QDEDGYFHYVARSDDMIVSAGYNI 398
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 2e-24
Identities = 73/283 (25%), Positives = 112/283 (39%), Gaps = 41/283 (14%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSPAVMLFTMPYFHIYG 248
D AAI+++SG+TG KGV+ THR A A+ S + + F +
Sbjct: 85 DDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLYGIREGDRD-------LAAFPPFA 137
Query: 249 LFFCFRAAALMETAVV--MQ-----RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST 301
LF AL T V+ M D + +A+ E + +P ++ +++
Sbjct: 138 LF----GPALGVTTVIPAMDPTAPAALDPAKLAQAIREIGASCVFGSPALLKNVARYCEE 193
Query: 302 DGYDLSSLETVACGAAPLGKDTIMAFASKF-PKVVLVQAYGLTE-------STAGVFRTV 353
+G L SL V AP+ D + F + P+ + YG TE V
Sbjct: 194 NGIQLPSLRRVLSAGAPVPPDLLRRFVANLMPEAEIHTPYGATEALPVASIEGREVLAES 253
Query: 354 GPDECRRWGS-TGRLSAGLEAKIV----DPETGDS----LPPGKEGELSIRGPTIMKGYV 404
G G G++ +I+ P LPPG+ GE+ + GP + + Y
Sbjct: 254 AEPPEAGAGVCVGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIVSGPHVTREYY 313
Query: 405 GEPEVTSATLLPDG---WMRTGDLCYIDEDGFLFIVDRLKDLI 444
PE T + DG W R GDL Y D+ G L+ R +
Sbjct: 314 NRPEATKLAKISDGNRIWHRMGDLGYFDDQGRLWFCGRKAHRV 356
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 3e-24
Identities = 110/432 (25%), Positives = 178/432 (41%), Gaps = 44/432 (10%)
Query: 39 SAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTA 98
S+ V+ L LP +DD L S+ E R + + A+ L+ ++
Sbjct: 2 SSAPTVAEL--LLPLAEDDDRGL--YFEDSFTSWREHIRGSAARAAALRARLDPTRPPHV 57
Query: 99 FVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK 158
VL N+ E +L + G++ NP + ++R I ++ + S+ L
Sbjct: 58 GVLLDNTPEFSLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDG 117
Query: 159 LKH--RTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRN 216
L R I +DSP + ++ + E D+ ++++SGT+G K V THR
Sbjct: 118 LDPGVRVINVDSPAWAD-ELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRK 176
Query: 217 LTAA---VASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVM-QRFDLKM 272
+ +A +A F P V +MP FH + + A ++ + ++F
Sbjct: 177 VASAGVMLAQRFGLGPDDVC----YVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASG 232
Query: 273 MLKAVEEFRVTHAA-VTPPIVVAMSKGGSTDGYDLSSLETVAC--GAAPLGKDTIMAFAS 329
L V + T+A V P+ ++ D D + L V GA I FA
Sbjct: 233 FLPDVRRYGATYANYVGKPLSYVLATPERPDDAD-NPLRIVYGNEGAPG----DIARFAR 287
Query: 330 KFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKE 389
+F V+V +G TE + RT G+ G L G+ IVDP+TG PP ++
Sbjct: 288 RF-GCVVVDGFGSTEGGVAITRTPDTPP----GALGPLPPGV--AIVDPDTGTECPPAED 340
Query: 390 ------------GEL-SIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFI 436
GEL + GP +GY +PE A + G +GDL Y D DG+ +
Sbjct: 341 ADGRLLNADEAIGELVNTAGPGGFEGYYNDPEAD-AERMRGGVYWSGDLAYRDADGYAYF 399
Query: 437 VDRLKDLIKYKG 448
RL D ++ G
Sbjct: 400 AGRLGDWMRVDG 411
|
Length = 529 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 4e-24
Identities = 52/133 (39%), Positives = 64/133 (48%), Gaps = 5/133 (3%)
Query: 315 GAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAK 374
G APL DT F ++Q YGLTE+ AG T+ G G E K
Sbjct: 277 GGAPLSPDT-QEFLRVALGCPVLQGYGLTETCAGG--TLSDPGDTTTGHVGPPLPCCEIK 333
Query: 375 IVD-PETG-DSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDG 432
+VD PE G + GE+ IRGP + KGY PE T+ DGW TGD+ DG
Sbjct: 334 LVDVPEMGYFAKDDPPRGEICIRGPNVFKGYYKNPEKTAEAFDEDGWFHTGDIGEWLPDG 393
Query: 433 FLFIVDRLKDLIK 445
L I+DR K+L K
Sbjct: 394 TLKIIDRKKNLFK 406
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 6e-24
Identities = 102/422 (24%), Positives = 169/422 (40%), Gaps = 82/422 (19%)
Query: 69 RVSFSEFTRRTNSLASYLQN--VTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
+SF+E R++++A L + R + A ++ T S+E L F+L G +
Sbjct: 41 ELSFAELDARSDAIAHGLNAAGIGRGMR---AVLMVTPSLEFFALTFALFKAGAV----- 92
Query: 127 PVNTESEISRQ-----IQLSNP--VIAFATSSVVHKL-----AKLKHRTILIDSPEFDSM 174
PV + + + + + P I + + +L ++ + +
Sbjct: 93 PVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWGKPSVRRL-VTVGGRLLWGG 151
Query: 175 T-----MSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFA 226
T + + A + D+AAI+++SG+TG KGV+ TH A A+ +
Sbjct: 152 TTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYG 211
Query: 227 SSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDL--------KMMLKAVE 278
P + +P F ++ LF AL T+V+ D + A+E
Sbjct: 212 IEPGEID-------LPTFPLFALF----GPALGMTSVI-PDMDPTRPATVDPAKLFAAIE 259
Query: 279 EFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ 338
+ VT+ +P ++ + + G +G L SL V AP+ I F + P +
Sbjct: 260 RYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEIL 319
Query: 339 A-YGLTE--------STAGVFRTV-----GPDECRRWGSTGRLSAGLEAKIVD------P 378
YG TE S +F T G C GR G+E +I+ P
Sbjct: 320 TPYGATEALPISSIESREILFATRAATDNGAGIC-----VGRPVDGVEVRIIAISDAPIP 374
Query: 379 ETGDS--LPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG----WMRTGDLCYIDEDG 432
E D+ L G+ GE+ + GP + + Y PE T +PDG W R GDL Y+D G
Sbjct: 375 EWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQG 434
Query: 433 FL 434
L
Sbjct: 435 RL 436
|
Length = 552 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 1e-23
Identities = 85/286 (29%), Positives = 124/286 (43%), Gaps = 63/286 (22%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLF-TMPYFHIYGLFF 251
D A I+++SG+ G KGV+L+HRNL A A A SP +F +P FH +GL
Sbjct: 794 DPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARID--FSPEDKVFNALPVFHSFGL-- 849
Query: 252 CFRAAALMETAVVMQRFDLKMMLKAVEEF---RVTHAAVTPPIVVAMSKGGST------- 301
++ +L V+ F H + P ++ +T
Sbjct: 850 --TGGLVL------------PLLSGVKVFLYPSPLHYRIIPELIYDT---NATILFGTDT 892
Query: 302 ---------DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352
YD SL V GA + ++T + KF + +++ YG+TE TA V
Sbjct: 893 FLNGYARYAHPYDFRSLRYVFAGAEKVKEETRQTWMEKF-GIRILEGYGVTE-TAPVIAL 950
Query: 353 VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGY-------VG 405
P + G+ GRL G+E + ++P G + G G L +RGP +M GY V
Sbjct: 951 NTPMHNK-AGTVGRLLPGIEYR-LEPVPG--IDEG--GRLFVRGPNVMLGYLRAENPGVL 1004
Query: 406 EPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQV 451
EP DGW TGD+ IDE+GF+ I R K K G +
Sbjct: 1005 EP-------PADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMI 1043
|
Length = 1140 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-23
Identities = 119/452 (26%), Positives = 184/452 (40%), Gaps = 90/452 (19%)
Query: 48 RATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIE 107
+ L + D + ++ E +N A+ L+ + + K D F+
Sbjct: 60 KVALRYLDASRK--------EKYTYKELKELSNKFANVLKELG-VEKGDRVFIFMP---R 107
Query: 108 IPILYFSLLS---LGVIISPANPVNTESEISRQIQLSNPVIAFATSS-----VVHKLAKL 159
IP LYF+LL G I+ P E + +++ S + T + L L
Sbjct: 108 IPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPADDLPSL 167
Query: 160 KHRTILIDSP-EFDSMTMSWNSK-----HELDRAKVCQSDVAAIMYSSGTTGRVKGV--- 210
KH +L+ E T+ +N+ E D + D A + Y+SG+TG+ KGV
Sbjct: 168 KH-VLLVGEDVEEGPGTLDFNALMEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHV 226
Query: 211 ---MLTHRNLTAAVASSFASS--------PKRVSPAVMLFTMPYFHIYGLFFCFRAAALM 259
ML H T P V+ YG+F + A
Sbjct: 227 HNAMLQHY-QTGKYVLDLHEDDVYWCTADPGWVTGTS----------YGIFAPWLNGA-- 273
Query: 260 ETAVVMQ-RFDLKMMLKAVEEFRVTHAAV--TPPIVVAMSKGGSTD---GYDLSSLETVA 313
T V+ RF + + +E+++VT V T P + M G D YDLSSL +
Sbjct: 274 -TNVIDGGRFSPERWYRILEDYKVT---VWYTAPTAIRMLMGAGDDLVKKYDLSSLRHIL 329
Query: 314 CGAAPLGKDTIMAFASKFPKVVL--VQAYGL--------TESTAGVFRTVGPDECRRWGS 363
PL P+VV ++ +GL TE T G+ P + GS
Sbjct: 330 SVGEPLN-----------PEVVRWGMKVFGLPIHDNWWMTE-TGGIMIANYPAMDIKPGS 377
Query: 364 TGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG--PTIMKGYVGEPEVTSATLLPDGWMR 421
G+ G+EA IVD + G+ LPP + G L+I+ P++M+G PE + W
Sbjct: 378 MGKPLPGIEAAIVDDQ-GNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFA-GDWYV 435
Query: 422 TGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
+GD Y+DEDG+ + R+ D+IK G +V P
Sbjct: 436 SGDSAYMDEDGYFWFQGRVDDVIKTSGERVGP 467
|
Length = 570 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 4e-23
Identities = 104/406 (25%), Positives = 166/406 (40%), Gaps = 75/406 (18%)
Query: 71 SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNT 130
S+ E + A+ L ++ + K + F L S E+ + L LG + P
Sbjct: 2 SYQELKELSARFANVLASLG-VGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFG 60
Query: 131 ESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVC 190
I +++L + T L RT PE
Sbjct: 61 PEPIRDRLELGEAKVLITTPE-------LYERT----DPE-------------------- 89
Query: 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF-------------ASSPKRVSPAVM 237
D A + ++SGTTG+ KGV+ HR + A A++ + P V+
Sbjct: 90 --DPALLHFTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDVYWCTADPGWVTGTS- 146
Query: 238 LFTMPYFHIYGLFFCFRAAALMETAVVMQ--RFDLKMMLKAVEEFRVTHAAVTPPIVVAM 295
YG+ A L +V+ FD + +EE +VT P + +
Sbjct: 147 ---------YGII----APLLNGVTLVVDEGEFDAERWYGILEEEKVTVWYTAPTALRML 193
Query: 296 SKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353
+ G YDLSSL +A PL + + + K + + + TE T +
Sbjct: 194 MRAGPELAARYDLSSLRHIASVGEPLNPEVV-VWGEKVLGMPIHDTWWQTE-TGAIMIAN 251
Query: 354 GPDECRRWGSTGRLSAGLEAKIVDPETGDSL----PPGKEGELSIRG--PTIMKGYVGEP 407
P + GS GR G+EA +++ + GD L PG+ GEL+++ P++ +GY+G
Sbjct: 252 YPGIPVKPGSMGRPLPGIEAAVIERD-GDGLTPVTGPGQVGELALKPGWPSMFRGYLGNE 310
Query: 408 EVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
E +++ DGW TGDL Y DEDG+ + V R D+IK G+ V P
Sbjct: 311 ERYASSF-VDGWYLTGDLAYRDEDGYFWFVGRADDVIKTAGHLVGP 355
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 5e-23
Identities = 82/266 (30%), Positives = 127/266 (47%), Gaps = 25/266 (9%)
Query: 199 YSSGTTGRVKGVMLTHRNLTA-AVASSFASSPKRVSPAVMLFTMPYFHI--YGLFFCFRA 255
Y+SGTTG KG + +HR+ A ++ + + +L +P FH+ +GL + +
Sbjct: 183 YTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGLPY---S 239
Query: 256 AALMETAVVM--QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVA 313
A L +V+ D K + + +E RVT +A P + + + G S+L
Sbjct: 240 APLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTV 299
Query: 314 CGAAPLGKDTIMAFASKFPKVVLVQAYGLTE-STAGVFRTV-------GPDECRR-WGST 364
G + I F ++ V ++ A+G+TE S G + DE R+
Sbjct: 300 IGGSACPPAMIRTFEDEY-GVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQ 358
Query: 365 GRLSAGLEAKIVDPETGDSLP-PGKE-GELSIRGPTIMKGYVGEPEVTSATLLPDGWMRT 422
GR+ G++ KIV + G LP GK G+L +RGP ++ Y A+ L DGW T
Sbjct: 359 GRVIYGVDMKIVGDD-GRELPWDGKAFGDLQVRGPWVIDRYFR----GDASPLVDGWFPT 413
Query: 423 GDLCYIDEDGFLFIVDRLKDLIKYKG 448
GD+ ID DGF+ I DR KD+IK G
Sbjct: 414 GDVATIDADGFMQITDRSKDVIKSGG 439
|
Length = 539 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 5e-23
Identities = 88/410 (21%), Positives = 136/410 (33%), Gaps = 90/410 (21%)
Query: 67 GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
R+S++EF N A L+ + + K D +L N E + + +L LG + + N
Sbjct: 1 DRRLSYAEFNAWANRYAHALRAL-GVKKGDVVALLMENRPEYLLAWLALAKLGAVAALIN 59
Query: 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDR 186
++ I +S+
Sbjct: 60 TTQRGEVLAHCINVSD-------------------------------------------- 75
Query: 187 AKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHI 246
A+ D A +Y+SGTTG K +++HR A + F V+ +P +H
Sbjct: 76 ARAVIVDPAFYIYTSGTTGLPKAAIMSHRRWLRA-GAVFGGLGLLKPDDVLYLCLPLYHS 134
Query: 247 YGLFFCFRAAALMETAVVMQR-FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD 305
L + +A ++ ++R F V + T V G Y
Sbjct: 135 NALTVGWSSALAAGASLALRRKFSASQFWPDVRRYGATAF-----QYV-----GELCRYL 184
Query: 306 LSSLE---------TVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPD 356
L+ E G L D F +F +V+ YG TE G
Sbjct: 185 LNQPEKPDDRDHPLRKIIGNG-LRPDIWDEFKERFGVPRIVEFYGSTEGNVGFINLFNKP 243
Query: 357 ECRRWGSTGRL-SAGLEAKIVDPETGDSL----------PPGKEGEL--SIRGPTIMKGY 403
G+ GRL A + D ET + + PPG+ G L I GY
Sbjct: 244 -----GAVGRLPPAAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDRNPFDGY 298
Query: 404 VGEPEVTSATLLP-----DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKG 448
+ L D + TGDL D G+ + VDRL D ++KG
Sbjct: 299 TDDEATEKKILRDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKG 348
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 6e-23
Identities = 112/439 (25%), Positives = 186/439 (42%), Gaps = 65/439 (14%)
Query: 67 GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
G+ +S+ + R ++A+ LQ R S D A +L + + +F L GVI PA
Sbjct: 38 GVVLSYRDLDLRARTIAAALQ--ARASFGDRAVLLFPSGPDYVAAFFGCLYAGVIAVPAY 95
Query: 127 PVNTESEISRQ---------IQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSM-TM 176
P E +R+ I + P + + + L +++ ++PE + T+
Sbjct: 96 P----PESARRHHQERLLSIIADAEPRLLLTVADLRDSLLQMEELAA-ANAPELLCVDTL 150
Query: 177 SWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVS 233
+ D+A + Y+SG+T KGV ++H NL A + F ++
Sbjct: 151 DPALAEAWQEPALQPDDIAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGID---LN 207
Query: 234 PA-VMLFTMPYFHIYGLF-------FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHA 285
P V++ +P +H GL F LM A ++R L+ L+A+ E+ T +
Sbjct: 208 PDDVIVSWLPLYHDMGLIGGLLQPIFSGVPCVLMSPAYFLER-PLRW-LEAISEYGGTIS 265
Query: 286 A---VTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKV-----VLV 337
+ + + DLS G+ P+ +D++ FA KF
Sbjct: 266 GGPDFAYRLCSERVSESALERLDLSRWRVAYSGSEPIRQDSLERFAEKFAACGFDPDSFF 325
Query: 338 QAYGLTEST---AGVFRTVGPDECRRWG-----------------STGRLSAGLEAKIVD 377
+YGL E+T +G R G S GR G IVD
Sbjct: 326 ASYGLAEATLFVSGGRRGQGIPALELDAEALARNRAEPGTGSVLMSCGRSQPGHAVLIVD 385
Query: 378 PETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP-DG--WMRTGDLCYIDEDGFL 434
P++ + L + GE+ GP+I GY PE ++ T + DG W+RTGDL ++ DG L
Sbjct: 386 PQSLEVLGDNRVGEIWASGPSIAHGYWRNPEASAKTFVEHDGRTWLRTGDLGFL-RDGEL 444
Query: 435 FIVDRLKDLIKYKGYQVLP 453
F+ RLKD++ +G+ + P
Sbjct: 445 FVTGRLKDMLIVRGHNLYP 463
|
Length = 4334 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 1e-22
Identities = 95/424 (22%), Positives = 165/424 (38%), Gaps = 63/424 (14%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
D +AL+ ++++E R N LA L+ + D +L S E+ + ++L
Sbjct: 2 DAIALVYG--DRSLTYAELNERANRLARRLRA-RGVGPGDVVALLLERSPELVVAILAIL 58
Query: 117 SLG---VIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDS 173
G V + PA P + + ++ + + + + +L + + D
Sbjct: 59 KAGAAYVPLDPAYPAERLAFMLEDSGARV-LLTDESLAPLARADQLPLVILEEELDAED- 116
Query: 174 MTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA-AVASSFASSPKRV 232
V D+A +MY+SG+TGR KGV + HR + +++ +
Sbjct: 117 --------AGPPAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVVRLVRNTNYI----AL 164
Query: 233 SPA-VMLFTMPY------FHIYGLFFCFRAAALMETA--VVMQR---FDLKMMLKAVEEF 280
P L P F I+G AL+ V++ + D + + + E
Sbjct: 165 DPDDRFLQLSPLSFDASTFEIWG--------ALLNGGRLVLIDKETLLDPDRLARLIAEQ 216
Query: 281 RVTHAAVTPPI---VVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLV 337
VT +T + +V D L+ L + G L + + P + L+
Sbjct: 217 GVTVLWLTAALFNQLVD------EDPEALAGLRQLLVGGDVLSPAHVRRVLAACPGLRLI 270
Query: 338 QAYGLTESTAGVFRTVGPDECRRWGST----GRLSAGLEAKIVDPETGDSLPPGKEGELS 393
YG TE+T F T + GR I+D E G +P G GEL
Sbjct: 271 NGYGPTENT--TFSTCHVITRLDEAADSIPIGRPIPNTTVYILD-EEGQPVPIGVPGELY 327
Query: 394 IRGPTIMKGYVGEPEVTSATLLPD----G--WMRTGDLCYIDEDGFLFIVDRLKDLIKYK 447
+ G + GY+ PE+T+ +PD G RTGDL DG + + R+ +K +
Sbjct: 328 VGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGDLARWRPDGNIEFLGRIDRQVKIR 387
Query: 448 GYQV 451
G+++
Sbjct: 388 GFRI 391
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 1e-22
Identities = 101/408 (24%), Positives = 158/408 (38%), Gaps = 89/408 (21%)
Query: 70 VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
S+++ ++R+N +A++L+ + + D ++ N E+ + + LG ++ PA +
Sbjct: 1 YSYAQLSKRSNRVANFLRK-HGVRRGDRVLLMLPNVPELWEAMLAAIKLGAVVIPATTLL 59
Query: 130 TESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKV 189
T +++ + P A RA
Sbjct: 60 TPADLRDRFSRGKPKAIVADE----------------------------------TRAD- 84
Query: 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA-------------SSPKRVSPAV 236
D + ++SGTTG K V+ TH + S+ SSP A
Sbjct: 85 ---DPILLYFTSGTTGLPKLVLHTHVSYPVGHLSTMYWIGLQPGDIHLNISSPGWAKHA- 140
Query: 237 MLFTMPYFHIYGLFFCFRAAALMETAVVM---QRFDLKMMLKAVEEFRVTHAAVTPPIVV 293
+ F A V RFD + L A+E+F VT PP V
Sbjct: 141 -------------WSSFFAPWNAGATVFGINYPRFDARRYLGALEKFGVT-TFCAPPTVW 186
Query: 294 AMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV---- 349
M YD+ E V+ G PL + I + + + YG TE+TA +
Sbjct: 187 RMFIQQDLAQYDVRLREAVSAGE-PLNPEVIERVKKAW-GLTIRDGYGQTETTAMIGNSP 244
Query: 350 FRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSI----RGPTIMKGYVG 405
+ V P GS GR G ++D E P EGE+++ R +M GY+G
Sbjct: 245 GQKVKP------GSMGRPLPGYRVVLLDDE--GKEIPVTEGEIALDLGDRPIGLMLGYMG 296
Query: 406 EPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
+PE T A G+ RTGD Y DEDG+L+ V R D+ K Y++ P
Sbjct: 297 DPEKT-AAAFRGGYYRTGDKAYRDEDGYLWFVGRADDVFKSSDYRISP 343
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 8e-22
Identities = 118/427 (27%), Positives = 181/427 (42%), Gaps = 62/427 (14%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
D +A+I + S+ E + +++LA L+ + DTA V N E I +F
Sbjct: 35 AASDAIAVICG--ERQFSYRELNQASDNLACSLRR-QGIKPGDTALVQLGNVAEFYITFF 91
Query: 114 SLLSLGVIISPANPVNT-----ESEIS---RQIQLSNP--VIA------FATSSVVHKLA 157
+LL LGV PVN SE++ QI+ P +IA F+ ++ L
Sbjct: 92 ALLKLGVA-----PVNALFSHQRSELNAYASQIE---PALLIADRQHALFSDDDFLNTLV 143
Query: 158 K----LKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSD-VAAIMYSSGTTGRVKGVML 212
L+ +L D E S+ + N E A +D VA S G+TG K +
Sbjct: 144 AEHSSLRVVLLLNDDGEH-SLDDAINHPAEDFTATPSPADEVAFFQLSGGSTGTPKLIPR 202
Query: 213 THRNLTAAVASS-----FASSPKRVS--PAVMLFTMPYFHIYGLFFCFRAAALMETAVVM 265
TH + +V S F + + PA + M G+F L
Sbjct: 203 THNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAPDPSAT 262
Query: 266 QRFDLKMMLKAVEEFRVTHAAVTPPIVV----AMSKGGSTDGYDLSSLETVACGAAPLGK 321
F L +E+ +V A+ PP V A+++GGS L+SL+ + G A L +
Sbjct: 263 LCFPL------IEKHQVNVTALVPPAVSLWLQAIAEGGS--RAQLASLKLLQVGGARLSE 314
Query: 322 DTIMAFASKFPKVV---LVQAYGLTESTAGVFRTVGPDECRRWGSTGR-LSAGLEAKIVD 377
A + P + L Q +G+ E R DE R + + GR +S E + D
Sbjct: 315 ----TLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDE-RIFTTQGRPMSPDDEVWVAD 369
Query: 378 PETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIV 437
G+ LP G+ G L RGP +GY P+ ++ +G+ +GDL ID DG++ +V
Sbjct: 370 -ADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVV 428
Query: 438 DRLKDLI 444
R KD I
Sbjct: 429 GREKDQI 435
|
Length = 536 |
| >gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 97.4 bits (242), Expect = 8e-22
Identities = 118/412 (28%), Positives = 183/412 (44%), Gaps = 24/412 (5%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
D A+I + TG +VS+ + + +LA L + L D +LS NS E ++ ++ L
Sbjct: 12 DRPAVIVAETGEQVSYRQLDDDSAALARVLYDAG-LRTGDVVALLSDNSPEALVVLWAAL 70
Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDS--PEFDSM 174
G+ I+ N T E + S + A++++ AK+ L S E D
Sbjct: 71 RSGLYITAINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGADLPLRLSFGGEIDGF 130
Query: 175 TMSWNSKHELDRAKVCQSDVAAIM-YSSGTTGRVKGVM--LTHRNLTA------AVASSF 225
S+ + ++ + A+M YSSGTTG KG+ L R++ A A+A +F
Sbjct: 131 G-SFEAALAGAGPRLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAF 189
Query: 226 ASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHA 285
+ + P +H L +C AL T V+ +RFD + L VE +R+T
Sbjct: 190 YDI---SESDIYYSSAPIYHAAPLRWCSMVHALGGTVVLAKRFDAQATLGHVERYRITVT 246
Query: 286 AVTPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLT 343
+ P + V + K + YD+SSL V AAP D A +V + Y T
Sbjct: 247 QMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVY-EYYSST 305
Query: 344 ESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGY 403
E+ F PD GS GR G + I D + G+ LP G+ G + + Y
Sbjct: 306 EAHGMTF-IDSPDWLAHPGSVGRSVLG-DLHICD-DDGNELPAGRIGTVYFERDRLPFRY 362
Query: 404 VGEPEVTSATLLPDG--WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
+ +PE T+A P W GDL +DEDG+L++ DR +I G + P
Sbjct: 363 LNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYP 414
|
Length = 501 |
| >gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 97.1 bits (242), Expect = 1e-21
Identities = 78/266 (29%), Positives = 123/266 (46%), Gaps = 22/266 (8%)
Query: 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAA 256
I+ +SGTTG KG + + + +P R ++ P FH +G F A
Sbjct: 201 ILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVI-VAPMFHAWG-FSQLVLA 258
Query: 257 ALMETAVVMQR-FDLKMMLKAVEEFRVTHAAVTPP----IVVAMSKGGSTDGYDLSSLET 311
A + +V +R FD + L ++ R T AV P I+ ++ + Y SL
Sbjct: 259 ASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEV--RNRYSGRSLRF 316
Query: 312 VACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGST-GRLSAG 370
A + + D ++AF +F V + Y TE AG+ T P + R T GR + G
Sbjct: 317 AAASGSRMRPDVVIAFMDQFGDV-IYNNYNATE--AGMIATATPADLRAAPDTAGRPAEG 373
Query: 371 LEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL--LPDGWMRTGDLCYI 428
E +I+D + +P G+ G + +R T GY TS + DG+M +GD+ Y+
Sbjct: 374 TEIRILDQD-FREVPTGEVGTIFVRNDTQFDGY------TSGSTKDFHDGFMASGDVGYL 426
Query: 429 DEDGFLFIVDRLKDLIKYKGYQVLPL 454
DE+G LF+V R ++I G V P+
Sbjct: 427 DENGRLFVVGRDDEMIVSGGENVYPI 452
|
Length = 537 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 2e-21
Identities = 52/120 (43%), Positives = 68/120 (56%), Gaps = 10/120 (8%)
Query: 337 VQAYGLTES--TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKE--GEL 392
V+ YG+TE+ T R G RR G G AG+E ++VD E G +P E GEL
Sbjct: 270 VERYGMTETLITLST-RADGE---RRPGWVGLPLAGVETRLVD-EDGGPVPHDGETVGEL 324
Query: 393 SIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLK-DLIKYKGYQV 451
+RGPT+ GY+ P+ T+A DGW RTGD+ +D DG IV R DLIK GY++
Sbjct: 325 QVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRI 384
|
Length = 471 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 3e-21
Identities = 103/425 (24%), Positives = 161/425 (37%), Gaps = 69/425 (16%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
D VAL+ R++++E R N LA YL L D + + N IE
Sbjct: 18 DRVALV--CGDRRLTYAELEERANRLAHYLIAQG-LGPGDHVGIYARNRIEYVEAMLGAF 74
Query: 117 SLGVIISPANPVN-----TESEISRQIQLSNPVIAFATSS-------VVHKLAKLKHRTI 164
+ PVN E E+ + S+ V V+ +L KL+ +
Sbjct: 75 KARAV-----PVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRT-LV 128
Query: 165 LID---SPEFDSMTMSWNS-----KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRN 216
+++ + + + E D + D+ ++Y+ GTTG KGVM +
Sbjct: 129 VVEDGSGNDLLPGAVDYEDALAAGSPERDFGERSPDDLY-LLYTGGTTGMPKGVMWRQED 187
Query: 217 L--TAAVASSFASSP---------KRVS---PAVMLFTMPYFHIYGLFFCFRAAALMETA 262
+ FA+ KR + P H G + F AA
Sbjct: 188 IFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQWAAF-AALFSGQT 246
Query: 263 VVM---QRFDLKMMLKAVEEFRVTHAAVT-----PPIVVAMSKGGSTDGYDLSSLETVAC 314
VV+ RFD + + +E +V + P++ A+ G YDLSSL +A
Sbjct: 247 VVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARG---PYDLSSLFAIAS 303
Query: 315 GAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTG--RLSAGLE 372
G A A P VVL + G +E+ G TV TG R + G
Sbjct: 304 GGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAKGA----VHTGGPRFTIGPR 359
Query: 373 AKIVDPETGDSLPPG--KEGELSIRGPTIMKGYVGEPEVTSATLLP-DG--WMRTGDLCY 427
++D + G+ + PG + G ++ RG I GY +PE T+ T DG + GD
Sbjct: 360 TVVLDED-GNPVEPGSGEIGWIARRGH-IPLGYYKDPEKTAETFPTIDGVRYAIPGDRAR 417
Query: 428 IDEDG 432
++ DG
Sbjct: 418 VEADG 422
|
Length = 533 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 4e-21
Identities = 81/311 (26%), Positives = 133/311 (42%), Gaps = 63/311 (20%)
Query: 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS---FASSPKRVSPAVMLFT-MPYFH 245
++D+ IMY+SGTTG KGV+LT+R + A V S+ + + + F+ +P H
Sbjct: 218 QKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAH 277
Query: 246 IY----GLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPP--------IVV 293
+Y + + A+ + + D++ +++ V+ + T P I+
Sbjct: 278 VYDQVIETYCISKGAS-----IGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQ 332
Query: 294 AMSKGGSTD--------GYDLSSLET-----------------------------VACGA 316
+S GG Y L +L + GA
Sbjct: 333 KISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGA 392
Query: 317 APLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIV 376
APL + + F VL Q YGLTES G F ++ + G+ G +EA++
Sbjct: 393 APLPRH-VEEFLRVTSCSVLSQGYGLTESCGGCFTSIA-NVFSMVGTVGVPMTTIEARLE 450
Query: 377 D-PETG-DSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFL 434
PE G D+L GE+ +RG T+ GY ++T L+ DGW TGD+ +G +
Sbjct: 451 SVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVLI-DGWFHTGDIGEWQPNGAM 509
Query: 435 FIVDRLKDLIK 445
I+DR K++ K
Sbjct: 510 KIIDRKKNIFK 520
|
Length = 660 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 1e-20
Identities = 47/140 (33%), Positives = 77/140 (55%), Gaps = 12/140 (8%)
Query: 315 GAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAK 374
GAAP+ ++T+ F S + +++ YG++E++ TV + R S G+ G E K
Sbjct: 326 GAAPISRETLEFFLSL--NIPIMELYGMSETSGP--HTVSNPQNYRLLSCGKALPGCETK 381
Query: 375 IVDPET-GDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGF 433
I +P+ G GE+ I G + GY+ E T + DGW+ +GDL ++D+DGF
Sbjct: 382 IHNPDADGI-------GEICIWGRHVFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGF 434
Query: 434 LFIVDRLKDLIKYKGYQVLP 453
L+I R+K+LI G + +P
Sbjct: 435 LYITGRIKELIITAGGENVP 454
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 6e-20
Identities = 103/415 (24%), Positives = 181/415 (43%), Gaps = 46/415 (11%)
Query: 68 LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANP 127
++ SF E + A+ L L + D V+ E ++ + + G++ P
Sbjct: 40 VKWSFRELGSLSRKAANVLSGACGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTI 99
Query: 128 VNTESEISRQIQLS-------NPVIAFATSSVVHKLAKLKHRTILIDSPE-------FDS 173
T +I ++Q S + +A A S+ + LK T L+ S F
Sbjct: 100 QLTAKDILYRLQASKAKCIVTSDELAPAVDSIASECPSLK--TKLLVSEHSRDGWLNFKE 157
Query: 174 MTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKR-V 232
+ +++H + K + AI ++SGTTG K M H + + + +
Sbjct: 158 LLKEASTEHTCVKTK--SQEPMAIYFTSGTTGFPK--MAEHSHSSLGLGLKVNGRYWLDL 213
Query: 233 SPAVMLFTMP-----YFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAV 287
+P+ +++ M I+ LF + A + + RFD K++L+ + ++ +T
Sbjct: 214 TPSDIMWNMSDTGWIKAAIWSLFSPWIQGACVFVHH-LPRFDPKVILQTLSKYPITTF-C 271
Query: 288 TPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES-- 345
+ P V M Y SL G PL + + + ++ + L + YG TE+
Sbjct: 272 SAPTVYRMLVQQDLTSYKFKSLRHCVTGGEPLNPEVLEQWKAQ-TGLDLYEGYGQTETGL 330
Query: 346 TAGVFRT--VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR-GPT---- 398
F+ + P GS G+ S + +I+D + G+ LPPG EG++ IR PT
Sbjct: 331 ICANFKGMKIKP------GSMGKASPPYDVQIID-DNGNVLPPGTEGDIGIRVKPTRPFC 383
Query: 399 IMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
+ YV PE T+AT+ D ++ TGD +DEDG+ + V R D+I GY++ P
Sbjct: 384 LFSCYVDNPEKTAATIRGDFYI-TGDRGIMDEDGYFWFVGRADDVINSSGYRIGP 437
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 7e-20
Identities = 93/401 (23%), Positives = 164/401 (40%), Gaps = 32/401 (7%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
+S++E R+ N LA L + SIE+ + ++L G P +P
Sbjct: 537 VLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVE-RSIEMVVGLLAVLKAGGAYVPLDPE 595
Query: 129 NTESEISRQIQLSNPVIAFATSSVVHKLAKLKH----RTILIDSPEFDSMTMSWNSKHEL 184
+ ++ + S + S H LA+L R++ +D P + S H
Sbjct: 596 YPQDRLAYMLDDSGVRLLLTQS---HLLAQLPVPAGLRSLCLDEPA---DLLCGYSGHNP 649
Query: 185 DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYF 244
+ A + +A ++Y+SG+TG+ KGV ++H L V ++++ + F
Sbjct: 650 EVALDPDN-LAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTFAF 708
Query: 245 HIYGLFFCFRAAALMETAVVMQR---FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST 301
+ F A A T ++ D + + + VT + P + A+ +
Sbjct: 709 DLGVTEL-FGALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRV 767
Query: 302 DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGP--DECR 359
+ CG L D + + P L+ YG TE+T GV + DE R
Sbjct: 768 AL--PRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGV--STYELSDEER 823
Query: 360 RWGST--GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD 417
+G+ G+ A L I+D + +P G GEL I G + +GY P +T+ +PD
Sbjct: 824 DFGNVPIGQPLANLGLYILDHYL-NPVPVGVVGELYIGGAGLARGYHRRPALTAERFVPD 882
Query: 418 GW-------MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQV 451
+ RTGDL DG + + R+ +K +G+++
Sbjct: 883 PFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRI 923
|
Length = 3956 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 7e-20
Identities = 91/310 (29%), Positives = 127/310 (40%), Gaps = 65/310 (20%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS------SFASSPKRVSPAVMLFTMPYFH 245
D+ IMY+SGT+G KGV+LTH + V F K V L +P H
Sbjct: 220 LDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFED--KMTHDDVYLSFLPLAH 277
Query: 246 IYGLF---FCFRAAA---------------LMET-----AVVMQRFD--LKMMLKAVEEF 280
I + FR A LME A V + F+ + + KA++E
Sbjct: 278 ILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQEL 337
Query: 281 R---------------------VTHAAVTP-PIVVAMSKGGSTDGYDLSSLETVACGAAP 318
+H +P +A K + G L + G AP
Sbjct: 338 NPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLG---GRLRLLISGGAP 394
Query: 319 LGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG-PDECRRWGSTGRLSAGLEAKIVD 377
L + I F +VQ YGLTE+ T+G PDE G+ G + E ++ +
Sbjct: 395 LSTE-IEEFLRVTSCAFVVQGYGLTETLGPT--TLGFPDEMCMLGTVGAPAVYNELRLEE 451
Query: 378 -PETG-DSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLF 435
PE G D L GE+ +RG + GY PE+T + DGW TGD+ I +G L
Sbjct: 452 VPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-KDGWFHTGDIGEILPNGVLK 510
Query: 436 IVDRLKDLIK 445
I+DR K+LIK
Sbjct: 511 IIDRKKNLIK 520
|
Length = 660 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 92.7 bits (230), Expect = 9e-20
Identities = 87/394 (22%), Positives = 157/394 (39%), Gaps = 21/394 (5%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
+ ++E RR N LA L + + V SIE+ + ++L G P +P
Sbjct: 536 TLDYAELNRRANRLAHALIERG-VGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPE 594
Query: 129 NTESEISRQIQLSNPVIAFATSSVVHKLA-KLKHRTILIDSPEFDSMTMSWNSKH--ELD 185
++ ++ S + + S + KL + + +D P +W + E
Sbjct: 595 YPAERLAYMLEDSGVQLLLSQSHLGRKLPLAAGVQVLDLDRPA------AWLEGYSEENP 648
Query: 186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYF- 244
++ ++A ++Y+SG+TG+ KG HR L+ + + V V+ T F
Sbjct: 649 GTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFD 708
Query: 245 -HIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDG 303
++ F+ + A + A D +++ + V P ++ A +
Sbjct: 709 VSVWEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDVA- 767
Query: 304 YDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGS 363
+SL + C L D +K P+ L YG TE+ V +E
Sbjct: 768 -SCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVP 826
Query: 364 TGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWM--- 420
GR A L I+D + +P G GEL + G + +GY G P +T+ +P ++
Sbjct: 827 IGRPIANLACYILDAN-LEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGE 885
Query: 421 ---RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQV 451
RTGDL DG + R+ +K +G ++
Sbjct: 886 RMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRI 919
|
Length = 5163 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 3e-19
Identities = 94/413 (22%), Positives = 157/413 (38%), Gaps = 40/413 (9%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
D A+I+ +++ E RR N++A+ L+ ++ D V+ E + +L
Sbjct: 2 DATAVIDG--AGTLTYGELARRANAIAAALRAA-GVAPGDLVAVVMPKGWEQIVAVLGIL 58
Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTM 176
G P +P + + + + + D+ +S
Sbjct: 59 LAGAAYVPIDPDQPAERRAAILARAGARAVLTDPGLAQPEEAPDLLVVADDAAAAESP-- 116
Query: 177 SWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHR---NLTAAVASSFASSPKRVS 233
+V D+A ++++SG+TG KGVM+THR N V F P
Sbjct: 117 ------APPPPRVDPDDLAYVIFTSGSTGEPKGVMITHRAAVNTILDVNRRFGVGPADRV 170
Query: 234 PAV--MLFTMPYFHIYGLFFCFRAAALMETAVVM----QRFDLKMMLKAVEEFRVTHAAV 287
A+ + F + + I+G A A A+V+ +R D + V+ VT
Sbjct: 171 LALSALHFDLSVYDIFGA---LSAGA----ALVLPDEARRRDPDHWAELVQRHGVTVWNS 223
Query: 288 TPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTEST- 346
P ++ + L SL V + D + P LV G TE++
Sbjct: 224 VPALMDMLLTYAEDAARLLPSLRLVMLSGDWIPLDLPRRLRALAPGARLVSLGGATEASI 283
Query: 347 -AGVFRTVGPDECRRWGST--GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGY 403
+ + D W S G+ + ++D E G P GEL I G + GY
Sbjct: 284 WSIYYPIDDVDP--DWRSIPYGKPLPNQKFYVLD-EDGRDCPDWVPGELYIGGVGVALGY 340
Query: 404 VGEPEVTSATLL--PDG--WMRTGDL-CYIDEDGFLFIVDRLKDLIKYKGYQV 451
G+PE+T+ + G RTGDL Y DG + + R +K +GY+V
Sbjct: 341 WGDPELTAERFITHRTGERLYRTGDLGRYRP-DGTIEFLGRADHQVKIRGYRV 392
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 4e-19
Identities = 74/284 (26%), Positives = 113/284 (39%), Gaps = 30/284 (10%)
Query: 186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVA-SSFASSPKRVSPAVMLFTMPYF 244
R K+ D+ A MY+SGTTG KGV + L A A +A + ++
Sbjct: 83 RGKL-DDDLFAQMYTSGTTGLPKGVPVPLNALAAFYAYMRYAIDLRD--------DDVFW 133
Query: 245 HI------YGLFFCFRAAALMETAVVMQR--FDLKMMLKAVEEFRVTHAAVTPPIVVAM- 295
+I YGL++ M V F + +E VT+ A +P +
Sbjct: 134 NIADPGWAYGLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNFAGSPTAYRMLM 193
Query: 296 SKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES--TAGVFRTV 353
+ G L + PL + + + V + YG TE+ G +
Sbjct: 194 AAGADAAARIKLKLRVASSAGEPLNPEVV-RWFQANLGVTIHDHYGQTETGMPVGNHHAL 252
Query: 354 GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR----GPTIMKGYVGEPEV 409
+ R GS G G ++D + G L G+ G+L+I GY +PE
Sbjct: 253 AHEV--RAGSMGLPLPGYRIAVLD-DDGQPLADGEPGQLAIDVASSPLLWFSGYWDDPEK 309
Query: 410 TSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
T A L+ W TGDL DEDG+ + + R D+I GY++ P
Sbjct: 310 T-AELIAGRWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGP 352
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 4e-19
Identities = 84/270 (31%), Positives = 121/270 (44%), Gaps = 33/270 (12%)
Query: 196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRA 255
A+ Y+SGTT KGV+L HR +A S A AV L+T+P FH G F +
Sbjct: 199 ALGYTSGTTASPKGVVLHHRG-AYLMALSNALIWGMNEGAVYLWTLPMFHCNGWCFTWTL 257
Query: 256 AALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY-DLSSLETV-A 313
AAL T + +++ K + A+ + VTH P ++ + ++ L + V
Sbjct: 258 AALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMT 317
Query: 314 CGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWG---------ST 364
GAAP + FA + YGL+E T GP W
Sbjct: 318 AGAAP---PPSVLFAMSEKGFRVTHTYGLSE-------TYGPSTVCAWKPEWDSLPPEEQ 367
Query: 365 GRLSA-------GLEA-KIVDPETGDSLPP-GKE-GELSIRGPTIMKGYVGEPEVTSATL 414
RL+A GLE +VD +T +P GK GE+ +RG +MKGY+ P+
Sbjct: 368 ARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEA- 426
Query: 415 LPDGWMRTGDLCYIDEDGFLFIVDRLKDLI 444
+GW +GDL DG++ I DR KD+I
Sbjct: 427 FANGWFHSGDLGVKHPDGYIEIKDRSKDII 456
|
Length = 567 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 4e-19
Identities = 73/291 (25%), Positives = 118/291 (40%), Gaps = 63/291 (21%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLF-TMPYFHIYGLFF 251
D+A ++Y+SG+TG+ KGV ++HR L + S A P + +L T F I
Sbjct: 94 DLAYVIYTSGSTGKPKGVEVSHRALVNFL-LSMARRPGLGASDRLLAVTTISFDI----- 147
Query: 252 CFRAAALME---------TAVVMQRFDLK---MMLKAVEEFRVTHAAVTPPIVVAMSKGG 299
+++E T V+ ++ + + + + R+T TP A +
Sbjct: 148 -----SVLELLLPLLSGATVVIASAETVRDPERLARLIADERITIMQATP----ATWRML 198
Query: 300 STDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECR 359
G+ T CG L +D S L YG TE+T
Sbjct: 199 LAAGWRGRESLTALCGGEALPRDLAERLLST--GAELWNMYGPTETTI------------ 244
Query: 360 RWGSTGRLSAGLEAK------------IVDPETGDSLPPGKEGELSIRGPTIMKGYVGEP 407
W + R++A ++D + +PPG GEL I G + +GY+G P
Sbjct: 245 -WSTCARVTAADGPVTIGRPIANTQVYVLDED-LQPVPPGVPGELYIGGDGVARGYLGRP 302
Query: 408 EVTSATLLPDG-------WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQV 451
E+T+ +PD RTGDL DG L + R D +K +G+++
Sbjct: 303 ELTAERFVPDPFDDPGGRLYRTGDLVRWRPDGRLEYLGRADDQVKIRGFRI 353
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 5e-19
Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 15/143 (10%)
Query: 309 LETVACGAAPLGKDTIMAFASKFPKVVL---VQAYGLTEST--AGVFRTVGPDECRRWGS 363
+ + G PL T +F VV +Q +GLTE+ G+ RT G E +
Sbjct: 430 VRAMLSGGGPLSAAT-----QEFVNVVFGMVIQGWGLTETVCCGGIQRT-GDLEP---NA 480
Query: 364 TGRLSAGLEAKIVD-PETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRT 422
G+L G+E K++D E + P GE+ +RGP + KGY + E+T L DGW T
Sbjct: 481 VGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHT 540
Query: 423 GDLCYIDEDGFLFIVDRLKDLIK 445
GD+ I +G L I+ R+K L K
Sbjct: 541 GDVGSIAANGTLRIIGRVKALAK 563
|
Length = 700 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 88.5 bits (219), Expect = 1e-18
Identities = 86/312 (27%), Positives = 137/312 (43%), Gaps = 67/312 (21%)
Query: 191 QSDVAAIMYSSGTTGRVKGVMLTHRN---LTAAVASSFASSPKRVSPA-VMLFTMPYFHI 246
+SD+ IMY+SGTTG KGVM+++ + L A V S+ ++ V L +P HI
Sbjct: 222 KSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHI 281
Query: 247 YGLFF--CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIV--------VAMS 296
+ CF A+ R D+K++++ + E + T P ++ +S
Sbjct: 282 FDRVIEECFIQHG---AAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLS 338
Query: 297 KGG--------STDGYDLSSLET-----------------------------VACGAAPL 319
GG S Y +++ + GAAPL
Sbjct: 339 DGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPL 398
Query: 320 GKDTIMAFASKFPKVV----LVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKI 375
+ F +VV ++Q YGLTES AG F ++ PDE G+ G ++ ++
Sbjct: 399 A-----SHVESFLRVVACCHVLQGYGLTESCAGTFVSL-PDELDMLGTVGPPVPNVDIRL 452
Query: 376 VD-PETG-DSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGF 433
PE D+L GE+ IRG T+ GY ++T L+ DGW+ TGD+ +G
Sbjct: 453 ESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVLI-DGWLHTGDVGEWQPNGS 511
Query: 434 LFIVDRLKDLIK 445
+ I+DR K++ K
Sbjct: 512 MKIIDRKKNIFK 523
|
Length = 666 |
| >gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 2e-18
Identities = 65/265 (24%), Positives = 106/265 (40%), Gaps = 41/265 (15%)
Query: 197 IMYSSGTTGRVKGVMLTHRNLTAA---------VASSFASSPKRVS----PAVMLFTMPY 243
++Y+ GTTG KGVM ++ + K+V+ L P
Sbjct: 8 MLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAAGGAGTRFLPACPL 67
Query: 244 FHIYGLFFCFRAAALMETAVVM---QRFDLKMMLKAVEEFRVTHAAVT-----PPIVVAM 295
H G + +A VV+ +FD + + VE+ RV + P++ A+
Sbjct: 68 MHGAGQWLAL-SALFAGGTVVLLPDDKFDPDRVWRTVEKHRVNTLVIVGDAFARPLLEAL 126
Query: 296 SKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG---VFRT 352
G YDLSSL ++ A + P + LV A G +E+ G V R
Sbjct: 127 EAAG---RYDLSSLRAISSSGAMWSPEVKQGLLELLPNLALVDALGASETGGGGSSVSRA 183
Query: 353 VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPG--KEGELSIRGPTIMKGYVGEPEVT 410
G TG+ G + ++D + + +PPG + G ++ G + GY +PE T
Sbjct: 184 GGASA------TGKFELGPDTVVLDEDGSE-VPPGSGEVGWIARGGR-VPLGYYKDPEKT 235
Query: 411 SATLLP-DG--WMRTGDLCYIDEDG 432
+ T DG + GD ++ DG
Sbjct: 236 AKTFREIDGVRYAVPGDFARVEADG 260
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 7e-18
Identities = 73/272 (26%), Positives = 114/272 (41%), Gaps = 26/272 (9%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVM-----LFTMPYFHIY 247
D+A ++Y+SG+TGR KGV + HRN A + + A V+ F + F I+
Sbjct: 106 DLAYVIYTSGSTGRPKGVAIEHRNAAALLQWAAAVFSAEELAGVLAATSICFDLSVFEIF 165
Query: 248 GLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS 307
L + + DL A E VT P + + + S
Sbjct: 166 VPLSTGGRVVLADN--ALALPDLP----AKAE--VTLINTVPSAARELLRHDALP----S 213
Query: 308 SLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRL 367
S+ TV PL ++ + + + YG +E T R S GR
Sbjct: 214 SVRTVNLAGEPLPQELVQRLYALPQVERVYNLYGPSEDTTYSTYAEVEPGASRTPSIGRP 273
Query: 368 SAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWM------- 420
AG +A ++D +P G GEL I G + +GY+G PE+T+ LP+ +
Sbjct: 274 LAGTQAYVLD-AHLQPVPVGVPGELYIGGAGVARGYLGRPELTAERFLPNPFAGSPGERL 332
Query: 421 -RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQV 451
RTGDL DG L + R+ D +K +G+++
Sbjct: 333 YRTGDLVRRRADGQLEYLGRIDDQVKVRGFRI 364
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 9e-18
Identities = 116/452 (25%), Positives = 180/452 (39%), Gaps = 95/452 (21%)
Query: 70 VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVI----ISPA 125
+++S+F R ++ + LQ VT+ D +L+ +++ I +F L G I PA
Sbjct: 56 LTWSQFGARNRAVGARLQQVTK--PGDRVAILAPQNLDYLIAFFGALYAGRIAVPLFDPA 113
Query: 126 NPVNTESEISRQIQLSNPVIAFATSSV--VHKL-----AKLKHRTILIDS-PEFDSMTMS 177
P + + + I T S V K AK + R I +D+ P D + +
Sbjct: 114 EPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAVP--DEVGAT 171
Query: 178 WNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAV-----ASSFASSPKRV 232
W + + +A + Y+SG+T GV +TH NL V A + V
Sbjct: 172 W------VPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGV 225
Query: 233 SPAVMLFTMPYFHIYGLF------FCFRAAALMETAVVMQR---FDLKMMLKAVEEFRVT 283
S +P+FH GL M A ++R + ++ K
Sbjct: 226 S------WLPFFHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTF 279
Query: 284 HAAVTPPIVVAMSKGGSTDG---YDLSSLETVACGAAPLGKDTIMAFASKF-----PKVV 335
AA A ++G DG DLS+++ + G+ P+ ++ F F P
Sbjct: 280 SAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTA 339
Query: 336 LVQAYGLTESTAGVFRTVGPDECR------------RW-------------GSTGRLSAG 370
+ +YG+ E+T V T +E R+ S G++
Sbjct: 340 IKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVS 399
Query: 371 LEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL---------------L 415
A IVDPET LP G+ GE+ + G I GY G+PE T+AT
Sbjct: 400 EWAVIVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGA 459
Query: 416 PDG--WMRTGDL-CYIDEDGFLFIVDRLKDLI 444
PD W+RTGD Y DG L+I R+KDL+
Sbjct: 460 PDDALWVRTGDYGVYF--DGELYITGRVKDLV 489
|
Length = 631 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 9e-18
Identities = 90/413 (21%), Positives = 161/413 (38%), Gaps = 27/413 (6%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
A I+ ++ L S+ E + L + L+ + + ++ + ++ PI + +
Sbjct: 20 GKTAFIDDISSL--SYGELEAQVRRLGAALRRLGVKREERVLLLM-LDGVDFPIAFLGAI 76
Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSS-------VVHKLAKLKHRTILID-- 167
G++ N + T + + ++ S + F + + K L+HR ++
Sbjct: 77 RAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPE 136
Query: 168 SPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFAS 227
+ E + + A D A +YSSG+TG KGV+ TH N A +A
Sbjct: 137 AGEVQLAELLATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPY-WTAELYAR 195
Query: 228 SPKRVSPAVMLFTMP-YFHIYGL----FFCFRAAALMETAVVM-QRFDLKMMLKAVEEFR 281
+ + ++F+ F YGL F A T V+M +R + + +
Sbjct: 196 NTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGA---TTVLMGERPTPDAVFDRLRRHQ 252
Query: 282 VTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYG 341
T P + AM + D L L + + ++F V +V G
Sbjct: 253 PTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARF-GVDIVDGIG 311
Query: 342 LTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMK 401
TE +F + P + R+G++G+ G ++V + G + G+ GEL I GP+
Sbjct: 312 STE-MLHIFLSNLPGDV-RYGTSGKPVPGYRLRLVG-DGGQDVAAGEPGELLISGPSSAT 368
Query: 402 GYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPL 454
Y T T W R+GD ++DG R D++K G V P
Sbjct: 369 MYWNNRAKTRDTFQ-GEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPF 420
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 1e-17
Identities = 81/294 (27%), Positives = 119/294 (40%), Gaps = 48/294 (16%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFT-MPYFHIYGLFF 251
D+A + YSSG+T +GV++THR L A + + +V P + +P++H GL
Sbjct: 177 DIAYLQYSSGSTRFPRGVIITHRALMAN-LRAISHDGLKVRPGDRCVSWLPFYHDMGLVG 235
Query: 252 CFRA--AALMETAVVMQRFDLKMM----LKAVEEFRVTHAAVTPP----IVVAMSKGGST 301
A + + R D L + R T + +PP +
Sbjct: 236 FLLTPVATQLSVDYLPTR-DFARRPLQWLDLISRNRGT-ISYSPPFGYELCARRVNSKDL 293
Query: 302 DGYDLSSLETVACGAAPLGKDTIMAFASKFPKV-----VLVQAYGLTESTAGVF------ 350
DLS GA + D + FA F + +YGL E+T V
Sbjct: 294 AELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGS 353
Query: 351 ----------------RTVGPDECRRWGST----GRLSAGLEAKIVDPETGDSLPPGKEG 390
+ V P R T G+ G E +I + E G LP G
Sbjct: 354 GIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGMPLPERVVG 412
Query: 391 ELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLI 444
+ +RGP++M GY + E + L DGW+ TGDL Y+ DG+L+I R KDLI
Sbjct: 413 HICVRGPSLMSGYFRDEE-SQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLI 464
|
Length = 579 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 2e-17
Identities = 75/268 (27%), Positives = 115/268 (42%), Gaps = 44/268 (16%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYF----HIYG 248
A I Y+SG+TG+ KGV L+ L VA S A + + P L +P +I G
Sbjct: 113 GTAKITYTSGSTGQPKGVCLSAAAL-ETVAQSLAEAIAILEPERHLCLLPLATLLENIAG 171
Query: 249 LFFCFRAAALMETAVVM-----------QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSK 297
++ A LM V++ D + A+ ++ + P +++A+
Sbjct: 172 VY----APLLMGATVILVPLAELGLSGSSGLDPAQFVAALSRWQPHSLILVPQLLMALVA 227
Query: 298 GGSTDGYDLSSLETVACGAAPLGKDTIM-AFASKFPKVVLVQAYGLTESTAGVFRTVGPD 356
SL VA G A + + A A P + + YGL+E A V P
Sbjct: 228 AVEQGPLPPESLRFVAVGGARVSPSLLQRARALGLP---VYEGYGLSEC-ASVVSLNTPG 283
Query: 357 ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP 416
R GS G+ ++ I + +GE+ +RG M GY+GEP
Sbjct: 284 A-DRPGSVGKPLPHVQVSIAN-----------DGEILVRGSL-MLGYLGEPPA------T 324
Query: 417 DGWMRTGDLCYIDEDGFLFIVDRLKDLI 444
D W TGDL ++DE+G+L+I R K+LI
Sbjct: 325 DDWWATGDLGHLDEEGYLYINGRKKNLI 352
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 3e-17
Identities = 83/389 (21%), Positives = 161/389 (41%), Gaps = 22/389 (5%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
+++ ++ +A++L + SKN T +L N IE L+ G P +
Sbjct: 26 VLTYKDWFESVCKVANWLN--EKESKNKTIAILLENRIEFLQLFAGAAMAGWTCVPLDIK 83
Query: 129 NTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAK 188
+ E+ ++ +SN + ++ L + R I ID + M +
Sbjct: 84 WKQDELKERLAISNADMIVTERYKLNDLPDEEGRVIEID----EWKRMIEKYLPTYAPIE 139
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRN----LTAAVASSFASSPKRVSPAVMLFTMPYF 244
Q+ + ++SG+TG+ K + ++ V V A L
Sbjct: 140 NVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLV----- 194
Query: 245 HIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY 304
H L+ + +T +M++F +L +E ++ P ++ ++ K +
Sbjct: 195 HSLFLYGAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYK---ENRV 251
Query: 305 DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGST 364
+ ++ ++ GA + + FP L + YG +E + V V + RR S
Sbjct: 252 IENKMKIISSGAK-WEAEAKEKIKNIFPYAKLYEFYGASE-LSFVTALVDEESERRPNSV 309
Query: 365 GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGD 424
GR ++ +I + E G+ + G+ G + ++ P GY+ V + L DGWM D
Sbjct: 310 GRPFHNVQVRICN-EAGEEVQKGEIGTVYVKSPQFFMGYIIG-GVLARELNADGWMTVRD 367
Query: 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
+ Y DE+GF++IV R K++I + G + P
Sbjct: 368 VGYEDEEGFIYIVGREKNMILFGGINIFP 396
|
Length = 487 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 4e-17
Identities = 94/455 (20%), Positives = 173/455 (38%), Gaps = 58/455 (12%)
Query: 23 HSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSL 82
H+ P + + + + A P + AL+ ++S++E RR N L
Sbjct: 3082 HAWNATAAAYPSERLV--HQLIEAQVARTP----EAPALV--FGDQQLSYAELNRRANRL 3133
Query: 83 ASYLQNVTRLSKNDTAF-VLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLS 141
A L + D V S+E+ + ++L G P +P ++ I+ S
Sbjct: 3134 AHRL--IAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDS 3191
Query: 142 NPVIAFATSSVVHKLAKLKH-RTILIDSPEFDSMTMSWNSKHELDRAKVCQSD-VAAIMY 199
+ + ++ +L + +D + N E + + + +A ++Y
Sbjct: 3192 GVKLLLTQAHLLEQLPAPAGDTALTLDR-------LDLNGYSENNPSTRVMGENLAYVIY 3244
Query: 200 SSGTTGRVKGVMLTH---RNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAA 256
+SG+TG+ KGV + H N +A ++ + V+LF F F A
Sbjct: 3245 TSGSTGKPKGVGVRHGALANHLCWIAEAYELD---ANDRVLLFMS---------FSFDGA 3292
Query: 257 ------ALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDL 306
L+ ++ R +D + + +A+ R++ A P + ++ G D
Sbjct: 3293 QERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDA--GGADC 3350
Query: 307 SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV-FRTVGPDECRRWGST- 364
+SL+ G + K L YG TE+ V G D
Sbjct: 3351 ASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAP 3410
Query: 365 -GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWM--- 420
GR AG ++D + +P G GEL I G + +GY P +T+ + D +
Sbjct: 3411 IGRPVAGRSIYVLD-GQLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSG 3469
Query: 421 ----RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQV 451
RTGDL DG + + R+ +K +G+++
Sbjct: 3470 GRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRI 3504
|
Length = 3956 |
| >gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 8e-17
Identities = 121/461 (26%), Positives = 187/461 (40%), Gaps = 102/461 (22%)
Query: 68 LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVI----IS 123
+ +++++ R ++ + LQ V D +L+ I+ +F+ + G I +
Sbjct: 67 VELTWTQLGVRLRAVGARLQQVAG--PGDRVAILAPQGIDYVAGFFAAIKAGTIAVPLFA 124
Query: 124 PANPVNTESEISRQIQLSNPVIAFATS----SVVHKLAKLKH----RTILIDS-PEFDSM 174
P P + E + ++ + P + T+ +V L L R I ID+ P DS
Sbjct: 125 PELPGHAE-RLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIP--DSA 181
Query: 175 TMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHR----NLTAAVAS--SFASS 228
++ DV+ + Y+SG+T GV +THR NL + S +
Sbjct: 182 G------ESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRN 235
Query: 229 PKRVSPAVMLFTMPYFHIYGL-FFCFRAAA-----LME-TAVVM--QRFDLKMMLKAVEE 279
VS +P +H GL F A LM TA V QR+ +K + +
Sbjct: 236 THGVS------WLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRW-IKALSEGSRT 288
Query: 280 FRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVAC--GAAPLGKDTIMAFASKF-----P 332
RV AA A +G +G D+ L V G+ P+ D + F F P
Sbjct: 289 GRVVTAAPNFAYEWAAQRGLPAEGDDID-LSNVVLIIGSEPVSIDAVTTFNKAFAPYGLP 347
Query: 333 KVVLVQAYGLTESTAGVFRTVGPD--------ECRRWG------------------STGR 366
+ +YG+ E+T V T+ PD + + G S G+
Sbjct: 348 RTAFKPSYGIAEATLFV-ATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQ 406
Query: 367 LSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL-------LPDG- 418
++ A IVDP+TG LP G+ GE+ + G I +GY G PE T T L +G
Sbjct: 407 VARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGS 466
Query: 419 ----------WMRTGDL-CYIDEDGFLFIVDRLKDLIKYKG 448
W+RTGDL Y+ DG L+I R+ DLI G
Sbjct: 467 HADGAADDGTWLRTGDLGVYL--DGELYITGRIADLIVIDG 505
|
Length = 612 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 2e-16
Identities = 99/428 (23%), Positives = 170/428 (39%), Gaps = 57/428 (13%)
Query: 71 SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNT 130
+F+ R +LA L + ++ + + N E + F++ +G + +P N
Sbjct: 40 TFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLM 99
Query: 131 ESEISRQIQLSNPVIAFATSSVVHKLAKLKH-----RTILIDSPEFDSMTMSWNSKH--- 182
+I I + + A + +L ++ R ++ P + +
Sbjct: 100 NDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKV 159
Query: 183 ------------ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK 230
D ++ ++ AAI YS+GTTG KGV+ +HR+L S +
Sbjct: 160 YSYEALLDGRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSL 219
Query: 231 RVSPAV-MLFTMPYFHIYGLFFCFRAAALME-TAVVMQRFDL--KMMLKAVEEF--RVTH 284
V+ L +P +H+ L + AA M T +V DL + K + RV H
Sbjct: 220 AVTHGESFLCCVPIYHV--LSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAH 277
Query: 285 AAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE 344
P + + + + + SL+ + G + + I A+ ++ V +V +G+TE
Sbjct: 278 GV--PTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERY-GVDVVHVWGMTE 334
Query: 345 STAGVFRTV-----GPDECRRWG---STGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG 396
++ TV G RW S GR A LE +IV+ EGE+ +RG
Sbjct: 335 TSP--VGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVNDGQVMESTDRNEGEIQVRG 392
Query: 397 PTIMKGYVGEP----------------EVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRL 440
+ Y P E + DGW+RTGD+ + DGFL I DR
Sbjct: 393 NWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRA 452
Query: 441 KDLIKYKG 448
+D+I+ G
Sbjct: 453 RDVIRSGG 460
|
Length = 576 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 80.0 bits (197), Expect = 1e-15
Identities = 62/273 (22%), Positives = 114/273 (41%), Gaps = 19/273 (6%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFF- 251
++A ++Y+SG+TGR KGV ++H +L + ++ V+ F F
Sbjct: 4695 NLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERYELTPDDRVLQFMSFSFDGSHEGLY 4754
Query: 252 ---CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSS 308
A+ ++ +D + + + E RVT P + +++ DG + S
Sbjct: 4755 HPLINGASVVIRDD---SLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERDG-EPPS 4810
Query: 309 LETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV--FRTVGPDEC-RRWGSTG 365
L G + + + V L YG TE+T V ++ D C + G
Sbjct: 4811 LRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACGAAYMPIG 4870
Query: 366 RLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGW------ 419
++D + + LP G GEL + G + +GY+ P +T+ +PD +
Sbjct: 4871 TPLGNRSGYVLDGQ-LNPLPVGVAGELYLGGEGVARGYLERPALTAERFVPDPFGAPGGR 4929
Query: 420 -MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQV 451
RTGDL DG + + R+ +K +G+++
Sbjct: 4930 LYRTGDLARYRADGVIDYLGRVDHQVKIRGFRI 4962
|
Length = 5163 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 3e-15
Identities = 81/291 (27%), Positives = 114/291 (39%), Gaps = 37/291 (12%)
Query: 182 HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNL---TAAVASSFASS--PKRVSPAV 236
D A V D I+Y+SG+TG KGV ++H NL T + + F S + ++ A
Sbjct: 132 VSFDHA-VKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAP 190
Query: 237 MLFTMPYFHIY------GLFFCFRAAALMETAVVMQRF-DLKMMLKAVEEFRVTHAAVTP 289
F + +Y G C + F L L + V+
Sbjct: 191 FSFDLSVMDLYPCLASGGTLHCL-------DKDITNNFKLLFEELPKT----GLNVWVST 239
Query: 290 PIVVAM---SKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTEST 346
P V M + + Y + CG L T A +FPK + YG TE+T
Sbjct: 240 PSFVDMCLLDPNFNQENYP-HLTHFLFCGEE-LPVKTAKALLERFPKATIYNTYGPTEAT 297
Query: 347 AGVFRTVGPDECRRWGST---GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGY 403
V E G + I+D E G+ LP G++GE+ I GP++ KGY
Sbjct: 298 VAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMD-EEGEPLPEGEKGEIVIVGPSVSKGY 356
Query: 404 VGEPEVTSATLLPDGWM---RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQV 451
+ PE T+ RTGD I DG LF RL IK GY++
Sbjct: 357 LNNPEKTAEAFFSHEGQPAYRTGDAGTI-TDGQLFYQGRLDFQIKLHGYRI 406
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 77.7 bits (191), Expect = 5e-15
Identities = 94/405 (23%), Positives = 159/405 (39%), Gaps = 23/405 (5%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
R D VAL R+S++E RR N LA L + + V S+E+ +
Sbjct: 3069 RTPDAVALA--FGEQRLSYAELNRRANRLAHRLIERG-VGPDVLVGVAVERSLEMVVGLL 3125
Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDS 173
++L G P +P E ++ ++ S + + S + LA+ L E
Sbjct: 3126 AILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHLRLPLAQGVQVLDLDRGDE--- 3182
Query: 174 MTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVS 233
N + ++A ++Y+SG+TG+ KGV + H L+ + + V
Sbjct: 3183 -----NYAEANPAIRTMPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYGLGVG 3237
Query: 234 PAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVV 293
V+ FT F ++ F V+ D + VE V
Sbjct: 3238 DRVLQFTTFSFDVFVEEL-FWPLMSGARVVLAGPEDWRDPALLVELINSEGVDVLHAYPS 3296
Query: 294 AMSKG-GSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352
+ D + +SL+ + CG L D + P L YG TE+T V
Sbjct: 3297 MLQAFLEEEDAHRCTSLKRIVCGGEALPADLQQQVFAGLP---LYNLYGPTEATITVTHW 3353
Query: 353 VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSA 412
+E + GR A I+D + + +P G GEL + G + +GY P +T+
Sbjct: 3354 QCVEEGKDAVPIGRPIANRACYILD-GSLEPVPVGALGELYLGGEGLARGYHNRPGLTAE 3412
Query: 413 TLLPDGWM------RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQV 451
+PD ++ RTGDL DG + + R+ +K +G+++
Sbjct: 3413 RFVPDPFVPGERLYRTGDLARYRADGVIEYIGRVDHQVKIRGFRI 3457
|
Length = 5163 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 76.2 bits (187), Expect = 7e-15
Identities = 107/440 (24%), Positives = 169/440 (38%), Gaps = 68/440 (15%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYL--QNVTRLSKNDTAFVLSTNSIEIPIL 111
+ + +AL + + E LA+ L Q+V+R S+ V+S N P
Sbjct: 26 QQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSR---VLVISDNG---PET 79
Query: 112 YFSLLS---LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDS 168
Y S+L+ LG I A+ + I R Q+++P A + + I
Sbjct: 80 YLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIPV 139
Query: 169 PEFDSMTMSWNSKHELDRAKVCQS------DVAAIMYSSGTTGRVKGVMLTHRNLTAA-- 220
D ++ S+H LD A + + D A++++SGTTG K V+L +R A
Sbjct: 140 IAVDIAAVTRESEHSLDAASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPD 199
Query: 221 ------------VASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVM--- 265
V SP +P HI GL++ LM + +
Sbjct: 200 ILQKEGLNWVTWVVGETTYSP-----------LPATHIGGLWWILTC--LMHGGLCVTGG 246
Query: 266 -QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTI 324
L +L V + P ++ + + + SL V G +
Sbjct: 247 ENTTSLLEILTTNA---VATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGS-----RA 298
Query: 325 MAFASKFPK---VVLVQAYGLTES--TAGVFRTVGPDECR-RWGSTGRLSAGLEAKIVDP 378
+A +F + V Q YGL+E+ TA T + G+ GR G++ +
Sbjct: 299 IAADVRFIEATGVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAAT 358
Query: 379 ETGDSLPPGKE-----GELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGF 433
+ PG G L I+ P M GY PE T+ L+ DGW+ TGDL EDGF
Sbjct: 359 DGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLI-DGWVNTGDLLERREDGF 417
Query: 434 LFIVDRLKDLIKYKGYQVLP 453
+I R ++I G + P
Sbjct: 418 FYIKGRSSEMIICGGVNIAP 437
|
Length = 540 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 9e-15
Identities = 93/413 (22%), Positives = 171/413 (41%), Gaps = 54/413 (13%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTN-SIEIPILYFSLLSLGVIISPANP 127
+++ E RR N LA L + + ++ S+E+ + ++L G P +P
Sbjct: 1599 ELTYGELNRRANRLAHRL--IALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAYVPLDP 1656
Query: 128 VNTESEISRQIQLSNPVIAFATSSVVHKLAKL-KHRTILIDSPEFDSMTMSWNSKHELDR 186
++ I+ S + S + +L R++++D + W +
Sbjct: 1657 EYPRERLAYMIEDSGIELLLTQSHLQARLPLPDGLRSLVLDQED------DWLEGYSDSN 1710
Query: 187 AKVCQSD--VAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSPAVMLFTM 241
V + +A ++Y+SG+TGR KG H L A ++ S + V+ FT
Sbjct: 1711 PAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSA---ADVVLQFT- 1766
Query: 242 PY---FHIYGLFFCFRAAALMETA-VVMQRF----DLKMMLKAVEEFRVTHAAVTPPIVV 293
+ ++ LF+ L+ A +V+ D + +++ +E +VT P ++
Sbjct: 1767 SFAFDVSVWELFW-----PLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQ 1821
Query: 294 AMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV-FRT 352
+ + + L SL V CG L + + + + P L YG TE+ V T
Sbjct: 1822 QLLQMDEQVEHPL-SLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWT 1880
Query: 353 VGPDECRRWGSTGRLS-------AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVG 405
CRR GR S A L I+D + + +P G GEL + G + +GY+
Sbjct: 1881 -----CRRKDLEGRDSVPIGQPIANLSTYILD-ASLNPVPIGVAGELYLGGVGLARGYLN 1934
Query: 406 EPEVTSATLLPDGW-------MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQV 451
P +T+ + D + RTGDL DG + + R+ +K +G+++
Sbjct: 1935 RPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRI 1987
|
Length = 3956 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 75.9 bits (186), Expect = 9e-15
Identities = 88/394 (22%), Positives = 147/394 (37%), Gaps = 30/394 (7%)
Query: 78 RTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQ 137
R L L+ + + D L N YF++ +G ++ ANP + EI+
Sbjct: 33 RARRLMGGLRALG-VGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYI 91
Query: 138 IQLSNPVIAFATSSVVHKLAK-LKHRTILIDSP-------EFDSMTMSWNSKHELDRAKV 189
+ + + +++ + + E + V
Sbjct: 92 LNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVR-V 150
Query: 190 CQSDVAAIMYSSGTTGRVKGVMLTHRN--LTAAVASSFASSPKRVSPAVMLFTMPYFHIY 247
+ + Y++GTTG KGV+ +HR L + AS + V+L +P FH+
Sbjct: 151 PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKD-VVLPVVPMFHVN 209
Query: 248 GLFFCFRAAALMETAVVMQR-FDLKMMLKAVEEFRVTHAAVTPPIV--VAMSKGGSTDGY 304
+ A + V+ D +++ + VT A P + +A +
Sbjct: 210 AWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRL 269
Query: 305 DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE----STAGVF----RTVGPD 356
V G+A + + V + Q YGLTE ++ +
Sbjct: 270 KTL-RRLVVGGSAA---PRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEE 325
Query: 357 ECRRWGSTGRLSAGLEA-KIVDPETGDSLPPGKEGE-LSIRGPTIMKGYVGEPEVTSATL 414
E + L L ++ D E GK + ++GP I GY G E T + L
Sbjct: 326 EKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSAL 385
Query: 415 LPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKG 448
PDG+ RTGD+ DE+G++ I DRLKDLIK G
Sbjct: 386 TPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGG 419
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 1e-14
Identities = 85/297 (28%), Positives = 126/297 (42%), Gaps = 60/297 (20%)
Query: 186 RAKVCQ--SDVAAIMYSSGTTGRVKGVMLTHRNLTAAV-----ASSFASSPKRVSPAVML 238
A+V Q D A I+++SG+ G KGV+ +H++L A V + F + + +S
Sbjct: 357 LAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMS----- 411
Query: 239 FTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIV----VA 294
+P FH +GL L V + L H + P +V
Sbjct: 412 -ALPLFHSFGLTVGLFTPLLTGAEVFLYPSPL-------------HYRIVPELVYDRNCT 457
Query: 295 MSKGGST---------DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES 345
+ G ST + YD + L V GA L + T + KF +L + YG+TE
Sbjct: 458 VLFGTSTFLGNYARFANPYDFARLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTEC 516
Query: 346 TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKE--GELSIRGPTIMKGY 403
V V P + G+ GR+ G++A+++ PG E G L ++GP IM GY
Sbjct: 517 APVVSINV-PMAAKP-GTVGRILPGMDARLLSV-------PGIEQGGRLQLKGPNIMNGY 567
Query: 404 V-----GEPEVTSAT----LLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQV 451
+ G EV +A + GW TGD+ DE GF+ I R K K G V
Sbjct: 568 LRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMV 624
|
Length = 718 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 3e-14
Identities = 66/276 (23%), Positives = 115/276 (41%), Gaps = 25/276 (9%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA-----VMLFTMPYFHIY 247
++A ++Y+SG+TG KGV ++H L A ++ +SPA M F+ H
Sbjct: 2147 NLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY--ELSPADCELQFMSFSFDGAH-E 2203
Query: 248 GLF--FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD 305
F A L+ + +D + + +E VT P + +++ DG
Sbjct: 2204 QWFHPLLNGARVLIRDD---ELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDGRP 2260
Query: 306 LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES--TAGVFRTVGPDECRRWGS 363
+ + G + ++ V L YG TE+ T +++ D C
Sbjct: 2261 PA-VRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPCGAAYV 2319
Query: 364 -TGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGW--- 419
GR A I+D + L PG GEL + G + +GY+ P +T+ +PD +
Sbjct: 2320 PIGRALGNRRAYILD-ADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSAS 2378
Query: 420 ----MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQV 451
RTGDL DG + + R+ +K +G+++
Sbjct: 2379 GERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRI 2414
|
Length = 5163 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 8e-14
Identities = 74/286 (25%), Positives = 119/286 (41%), Gaps = 37/286 (12%)
Query: 191 QSDVAAIMYSSGTTGRVKGVMLTHR----NLTAAVASSFASSPKRVS--PAVMLFTMPYF 244
+ D A I+Y+SGTTG+ KG + TH + F P M + M +
Sbjct: 99 KDDPAMIIYTSGTTGKPKGTVHTHAGFPVKAAKDIGFCFDLKPGDRLLWITDMGWMMGPW 158
Query: 245 HIYG--LF----FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIV-VAMSK 297
+ G L + A + R VE +VTH ++P ++ +
Sbjct: 159 LVLGGLLLGATIVLYEGAPDYPDPDRLWRI--------VERHKVTHLGLSPTLIRALRAH 210
Query: 298 GGST-DGYDLSSLETVACGAAPLGKDTIMAFASKFPK--VVLVQAYGLTESTAGVFRTVG 354
G + +G+DLSSL + P ++ + + ++ G TE + G+ +G
Sbjct: 211 GDAPVEGHDLSSLRVLGSTGEPWDPESWLWLFERVGGGRAPIINYSGGTEISGGI---LG 267
Query: 355 PDECR--RWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTI-M-KGYVGEPEVT 410
R + S S G++A +VD + G + GEL +R P M +G+ +PE
Sbjct: 268 NVPIRPIKPCSFNGPSPGMDADVVDED-GRPVRGE-VGELVVRAPWPGMTRGFWRDPERY 325
Query: 411 SATL---LPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
T P W GD +DEDG+ +I+ R D IK G +V P
Sbjct: 326 LETYWSRFPGVW-VHGDWALVDEDGYWYILGRSDDTIKVAGKRVGP 370
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 1e-13
Identities = 47/144 (32%), Positives = 65/144 (45%), Gaps = 13/144 (9%)
Query: 314 CGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT---VGPDECRRWGS--TGRLS 368
CG L T +FP + YG TE+T V T + + ++ G
Sbjct: 268 CGEE-LPHKTAKKLLERFPSATIYNTYGPTEATVAV--TSIEITDEMLDQYKRLPIGYAK 324
Query: 369 AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP-DGW--MRTGDL 425
I+D E G LP G++GE+ I GP++ KGY+ PE T+ DG TGD
Sbjct: 325 PDSPLLIID-EEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDA 383
Query: 426 CYIDEDGFLFIVDRLKDLIKYKGY 449
Y++ DG LF R+ IK GY
Sbjct: 384 GYLE-DGLLFYQGRIDFQIKLNGY 406
|
Length = 503 |
| >gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 75/274 (27%), Positives = 115/274 (41%), Gaps = 52/274 (18%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFF 251
DVA ++ +SGTTG KG MLT L AS+ A+ + P L +P HI GL
Sbjct: 35 DDVALVVATSGTTGTPKGAMLTAAAL---TASADATHDRLGGPGQWLLALPAHHIAGLQV 91
Query: 252 CFRAAALMETAVVMQ---RFDLKMMLKAVEEFRV--THAAVTP-PIVVAMSKGGSTDGYD 305
R+ V + FD + +AV E + ++ P + A+ +T
Sbjct: 92 LVRSVIAGSEPVELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAATAA-- 149
Query: 306 LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG-VFRTVGPDECRRWGST 364
L+ L+ V G P + A+ + +V+ YG++E++ G V+
Sbjct: 150 LAELDAVLVGGGPAPAP--VLDAAAAAGINVVRTYGMSETSGGCVY-------------D 194
Query: 365 GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD-----GW 419
G G+ ++ D G +++ GPT+ KGY + PD GW
Sbjct: 195 GVPLDGVRVRVED------------GRIALGGPTLAKGYRNPVD-------PDPFAEPGW 235
Query: 420 MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
RT DL +D DG L ++ R D I G VLP
Sbjct: 236 FRTDDLGALD-DGVLTVLGRADDAISTGGLTVLP 268
|
Length = 358 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 94/402 (23%), Positives = 155/402 (38%), Gaps = 56/402 (13%)
Query: 70 VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
V++ E R ++LA L ++ L +LS NSIE ++ + + GV +P +P
Sbjct: 81 VTYGEAKRAVDALAQALLDL-GLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSP-- 137
Query: 130 TESEIS------RQI-QLSNPVIAFATSSV-----VHKLAKLKHRTILIDSPEFDSMTMS 177
S +S + + L P + FA S + L L + + P +++
Sbjct: 138 AYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLLDVTVVHVTGPGEGIASIA 197
Query: 178 W--------NSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA--S 227
+ + A + VA +++SG+TG K V+ T R + A +A
Sbjct: 198 FADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRP 257
Query: 228 SPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAV--------VMQRFDLKMMLKAVEE 279
P V L MP+ H G F L + F+ ++ + E
Sbjct: 258 REPDPPPPVSLDWMPWNHTMGGNANFNGL-LWGGGTLYIDDGKPLPGMFE--ETIRNLRE 314
Query: 280 FRVTHAAVTPP----IVVAMSKGGSTDGYDLSSLETVACGAAPLGKDT---IMAFASKFP 332
T P + AM K + +L +A G A L D + A A +
Sbjct: 315 ISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGGATLSDDLYERMQALAVRTT 374
Query: 333 --KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEG 390
++ YG TE TA D R G G G+E K+ P G +
Sbjct: 375 GHRIPFYTGYGATE-TAPTTTGTHWDT-ERVGLIGLPLPGVELKLA--------PVGDKY 424
Query: 391 ELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLC-YIDED 431
E+ ++GP + GY +PE+T+A +G+ R GD ++D D
Sbjct: 425 EVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPD 466
|
Length = 624 |
| >gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 3e-13
Identities = 52/175 (29%), Positives = 72/175 (41%), Gaps = 26/175 (14%)
Query: 298 GGSTDGYDLSSLETVACGAAPLGKDTIMAFASK-----FPKVVLVQAYGLTESTAGVF-- 350
DL +L G P+ D FA+ F +YGL EST V
Sbjct: 263 ARRVSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVP 322
Query: 351 ---------RTVGPDE--CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKE-GELSIRGPT 398
D RR G G+E +I + G + G+E GE+ IRG +
Sbjct: 323 VPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGD-GAAGVAGREIGEIEIRGAS 381
Query: 399 IMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
+M GY+G+ A + PD W TGDL Y+ + G L + R K+LI G + P
Sbjct: 382 MMSGYLGQ-----APIDPDDWFPTGDLGYLVDGG-LVVCGRAKELITVAGRNIFP 430
|
Length = 525 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 4e-13
Identities = 73/289 (25%), Positives = 117/289 (40%), Gaps = 57/289 (19%)
Query: 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-----FF 251
I+Y+SGTTG+ KGV+ AVA ++ +IYG+ F+
Sbjct: 225 ILYTSGTTGKPKGVVRD--TGGYAVALKWSMR----------------NIYGIKPGDVFW 266
Query: 252 CFRA------------AALME--TAVVMQ-----RFDLKMMLKAVEEFRVTHAAVTPPIV 292
L+ T V+ + D + +EE+ V P +
Sbjct: 267 AASDVGWVVGHSYIVYGPLLHGATTVLYEGKPVGTPDAGAYWRVIEEYGVNALFTAPTAI 326
Query: 293 VAMSKGGSTDG-----YDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTA 347
A+ + DG YDLSSL + L T+ + K V ++ + TE+
Sbjct: 327 RAI-RKQDPDGEYIKKYDLSSLRALFLAGERLDSPTL-EWIEKTLGVPVIDHWWQTETGW 384
Query: 348 GVFRTVGPDECR--RWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPT---IMKG 402
+ E + GS G+ G + +++D ETG+ L PG+ G + I+ P +
Sbjct: 385 PITANCVGLELLPIKPGSPGKPVPGYDVQVLD-ETGEELGPGELGNIVIKLPLPPGCLLT 443
Query: 403 YVGEPEVTSATLLPD--GWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGY 449
G+ E L G+ TGD Y DEDG+LF++ R D+I G+
Sbjct: 444 LWGDDERFKKLYLNKFPGYYDTGDSGYKDEDGYLFVMGRTDDVINVAGH 492
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 8e-13
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 151 SVVHKLAKLKHRTILIDSPEFDSM----TMSWNSKHELDRAKVCQSDVAAIMYSSGTTGR 206
++ + L + + + D+ + S + +K K D+A IMY+SGTTG
Sbjct: 68 AIEYILNETEISIVFCDAVKVYSFEELEELGKKNKVPPTPPK--PEDLATIMYTSGTTGN 125
Query: 207 VKGVMLTHRNLTAAVASSFASSPKRVSPA-VMLFTMPYFHIYGLFF 251
KGVMLTH N+ A VA P+ + P V + +P HI+
Sbjct: 126 PKGVMLTHGNIVAGVAGINKIVPEFIGPTDVYISYLPLAHIFERVV 171
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 1e-12
Identities = 98/421 (23%), Positives = 145/421 (34%), Gaps = 96/421 (22%)
Query: 71 SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNT 130
++SE A +L + D + +TNS E L+ +L S+G + + N N
Sbjct: 7 TYSETYDLVLRYAHWLHGDRNVQSGDFVAIDTTNSAEFVFLWLALWSIGAVPAFIN-YNL 65
Query: 131 ESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVC 190
+ ++H L K+ +I P+
Sbjct: 66 SGD-----------------PLIHCL-KISGAKFVIVDPD-------------------- 87
Query: 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFT-MPYFHIYGL 249
D AA++Y+SGTTG KG ++ R V S+ S + +T MP +H
Sbjct: 88 --DPAALIYTSGTTGLPKGCAISWRRTL--VTSNPLSHDLNLQFPDRTYTCMPLYHGTAA 143
Query: 250 FFCFRAAALME--TAVVMQRFDLKMMLKAVEEFRVTHAAV----------TPPIVVAMSK 297
F L T + ++F K V + T TPP S
Sbjct: 144 FLGL-CYCLGSGGTLCLSRKFSASQFWKDVRDSEATIIQYVGELCRYLLATPP-----SP 197
Query: 298 GGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVF-RTVGP- 355
YD VA G L D F +F + + Y TE VGP
Sbjct: 198 ------YDRDHKVRVAYGNG-LRPDIWERFRERFNVPEIGEFYAATEGVFAFTNHNVGPF 250
Query: 356 --DECRRWGSTGRLSAGLEAKIV--DPETGDSL-----------PPGKEGELSIRGP--- 397
G R + +V DPET + P G+ GE+ R
Sbjct: 251 TAGAIGFSGLIRRWFLENQVFLVKMDPETDMPIRDPKTGFCVRAPVGEPGEMLGRVRFKN 310
Query: 398 -TIMKGYVGEPEVTSATLLPD------GWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQ 450
+ +GY+ + T + LL D W RTGDL D DG + +DRL D ++K
Sbjct: 311 RELFQGYLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADGRWYFLDRLGDTFRWKSEN 370
Query: 451 V 451
V
Sbjct: 371 V 371
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 4e-12
Identities = 40/111 (36%), Positives = 57/111 (51%), Gaps = 7/111 (6%)
Query: 338 QAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPET---GDSLPPGKEGELSI 394
Q YGLTE+T +F D G +S + K+ ET D+LP +GEL I
Sbjct: 491 QGYGLTETTGPIFVQHADD-NNTESIGGPISPNTKYKVRTWETYKATDTLP---KGELLI 546
Query: 395 RGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIK 445
+ +I GY E E T DG+ +TGD+ I+++G L +DR K L+K
Sbjct: 547 KSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVK 597
|
Length = 746 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 7e-12
Identities = 93/449 (20%), Positives = 153/449 (34%), Gaps = 88/449 (19%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
D AL+ +S++E R N A + + K D +L N E + L
Sbjct: 52 DRPALLFE--DQSISYAELNARANRYAHWAAARG-VGKGDVVALLMENRPEYLAAWLGLA 108
Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK-----HRTILIDSPEF 171
LG +++ N + ++ + L + +V + + + + +
Sbjct: 109 KLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDT 168
Query: 172 DSMTMSWNSKHEL----------DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAV 221
+ R+ V D A +Y+SGTTG K +++H A
Sbjct: 169 LDDPEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKA- 227
Query: 222 ASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALME--TAVVMQRFDLKMMLKAVEE 279
F + V+ +P +H G + ++ L T + ++F V
Sbjct: 228 MGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAW-SSVLAAGATLALRRKFSASRFWDDVRR 286
Query: 280 FRVTH-------------AAVTPPIVVAMSKGGSTD-GYDLSSLETVACGAAPLGKDTIM 325
+R T P TD + L + G L D
Sbjct: 287 YRATAFQYIGELCRYLLNQPPKP-----------TDRDHRL----RLMIGNG-LRPDIWD 330
Query: 326 AFASKF--PKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLE--AKIV--DPE 379
F +F P+++ + Y +E G D G+ GR+ L IV D +
Sbjct: 331 EFQQRFGIPRIL--EFYAASEGNVGFINVFNFD-----GTVGRVPLWLAHPYAIVKYDVD 383
Query: 380 TGDSL----------PPGKEGEL----SIRGPTIMKGYVGEPEVTSATLLPDG------W 419
TG+ + PG+ G L + RGP GY +PE + +L D W
Sbjct: 384 TGEPVRDADGRCIKVKPGEVGLLIGRITDRGP--FDGY-TDPEASEKKILRDVFKKGDAW 440
Query: 420 MRTGDLCYIDEDGFLFIVDRLKDLIKYKG 448
TGDL D G VDRL D ++KG
Sbjct: 441 FNTGDLMRDDGFGHAQFVDRLGDTFRWKG 469
|
Length = 600 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 9e-11
Identities = 48/135 (35%), Positives = 66/135 (48%), Gaps = 8/135 (5%)
Query: 315 GAAPLGKDTIMAFASK-FPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEA 373
GA+PL D +M F F VL + YG+TE T+ V + + G G + E
Sbjct: 384 GASPLSPD-VMEFLRICFGGRVL-EGYGMTE-TSCVISGMDEGD-NLSGHVGSPNPACEV 439
Query: 374 KIVD-PETG--DSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDE 430
K+VD PE P GE+ +RGP I KGY + T + DGW+ TGD+
Sbjct: 440 KLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLP 499
Query: 431 DGFLFIVDRLKDLIK 445
G L I+DR K++ K
Sbjct: 500 GGRLKIIDRKKNIFK 514
|
Length = 651 |
| >gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 1e-10
Identities = 83/340 (24%), Positives = 126/340 (37%), Gaps = 104/340 (30%)
Query: 176 MSWNSKHELD----RAKVCQSDVAA----------IMYSSGTTGRVKGVMLTHRNLTAAV 221
M+ + ++D RA+ + V I+Y+SGTTG+ KGV R+ T
Sbjct: 203 MARVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGV---QRD-TGGY 258
Query: 222 ASSFASSPKRVSPAVMLFTMPYFHIYG-----LFFC-------------FRAAALMETAV 263
A + A+S I+G FFC A L A
Sbjct: 259 AVALATSMD--------------TIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMAT 304
Query: 264 VMQ-----RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD---GYDLSSLETVACG 315
+M R D + + VE+++V + P + + K +DLSSL +
Sbjct: 305 IMYEGLPTRPDAGIWWRIVEKYKVNRM-FSAPTAIRVLKKQDPALLRKHDLSSLRALFLA 363
Query: 316 AAPLGKDTIMAFASKFPKVVLVQAYGLTES---TAGVFRTVGPDECRRWGSTGRLSAGLE 372
PL + T ++ S+ V ++ Y TE+ + R V D R GS G G
Sbjct: 364 GEPLDEPT-ASWISEALGVPVIDNYWQTETGWPILAIARGVE-DRPTRLGSPGVPMYGYN 421
Query: 373 AKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRT--GD------ 424
K+++ TG+ P ++G L I GP LP G M+T GD
Sbjct: 422 VKLLNEVTGEPCGPNEKGVLVIEGP-----------------LPPGCMQTVWGDDDRFVK 464
Query: 425 --------LCY-------IDEDGFLFIVDRLKDLIKYKGY 449
Y D DG+ FI+ R D+I G+
Sbjct: 465 TYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGH 504
|
Length = 629 |
| >gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 4e-10
Identities = 90/424 (21%), Positives = 147/424 (34%), Gaps = 93/424 (21%)
Query: 70 VSFSEFTRRTNSLASYL--------QNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVI 121
+S+ E R T SLA L + V + +N FV + ++G++
Sbjct: 61 LSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAV------------FAVGLL 108
Query: 122 ISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSK 181
+ P++TE F + ++ L T++ D+ + + + ++
Sbjct: 109 GADVVPISTE---------------FRSDALAAALRAHHISTVVADNEFAERIAGADDAV 153
Query: 182 HELDRAKVCQSDVAA----------IMYSSGTTGRVKGVMLTHRNLTA-AVASSFASSPK 230
+D A + ++ +SGTTG+ KGV + +A V + +
Sbjct: 154 AVIDPATAGAEESGGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTR 213
Query: 231 RVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPP 290
+ + + MP FH GL AL T + + FD + L R P
Sbjct: 214 LRTGSRISVAMPMFHGLGLGMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPV 273
Query: 291 IV--------------------VAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASK 330
++ V MS G D LG+ + +
Sbjct: 274 VLARILELPPRVRARNPLPQLRVVMSSGDRLD--------------PTLGQRFMDTYGD- 318
Query: 331 FPKVVLVQAYGLTESTAGVFRTVGPDECRRWGST-GRLSAGLEAKIVDPETGDSLPPGKE 389
+L YG TE G T P + R T G+ AG +I+D + P
Sbjct: 319 ----ILYNGYGSTEVGIGALAT--PADLRDAPETVGKPVAGCPVRILD-RNNRPVGPRVT 371
Query: 390 GELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGY 449
G + + G Y + DG TGD+ Y+D G LFIV R D+I G
Sbjct: 372 GRIFVGGELAGTRYTD----GGGKAVVDGMTSTGDMGYLDNAGRLFIVGREDDMIISGGE 427
Query: 450 QVLP 453
V P
Sbjct: 428 NVYP 431
|
Length = 516 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 5e-10
Identities = 73/292 (25%), Positives = 108/292 (36%), Gaps = 56/292 (19%)
Query: 187 AKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFH- 245
+V D ++++SGTTG K V +H L A + V +MP FH
Sbjct: 145 REVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFA-GRALTERFGLTRDDVCYVSMPLFHS 203
Query: 246 --IYGLFFCFRAAALMETAVVMQR--FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST 301
+ + A A+ A V F L V + T+ + G
Sbjct: 204 NAVMAGW----APAVASGAAVALPAKFSASGFLDDVRRYGATY----------FNYVGKP 249
Query: 302 DGYDLSSLE---------TVACG--AAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVF 350
Y L++ E VA G A+P +D I F+ +F + YG S+ G
Sbjct: 250 LAYILATPERPDDADNPLRVAFGNEASP--RD-IAEFSRRF-GCQVEDGYG---SSEGAV 302
Query: 351 RTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGK-------------EGEL-SIRG 396
V GS GR + G+ I +PET + GEL + G
Sbjct: 303 IVVREPGTPP-GSIGRGAPGVA--IYNPETLTECAVARFDAHGALLNADEAIGELVNTAG 359
Query: 397 PTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKG 448
+GY PE T A + G +GDL Y D DG+++ R D ++ G
Sbjct: 360 AGFFEGYYNNPEAT-AERMRHGMYWSGDLAYRDADGWIYFAGRTADWMRVDG 410
|
Length = 540 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 6e-10
Identities = 49/142 (34%), Positives = 62/142 (43%), Gaps = 16/142 (11%)
Query: 314 CGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEA 373
G APL DT F + + Q YGLTE+ AG + D S GR+ L
Sbjct: 427 SGGAPLSGDT-QRFINICLGAPIGQGYGLTETCAGATFSEWDDT-----SVGRVGPPLPC 480
Query: 374 ---KIVDPETGDSL---PPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG----WMRTG 423
K+V E G L P GE+ I GP++ GY E T D W TG
Sbjct: 481 CYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTG 540
Query: 424 DLCYIDEDGFLFIVDRLKDLIK 445
D+ DG L I+DR KD++K
Sbjct: 541 DIGQFHPDGCLEIIDRKKDIVK 562
|
Length = 696 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 9e-10
Identities = 27/58 (46%), Positives = 34/58 (58%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL 249
+D+A IMY+SG+TG KGVM+TH N+ A VA PK V L +P HI L
Sbjct: 250 NDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAHILEL 307
|
Length = 696 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 72/277 (25%), Positives = 121/277 (43%), Gaps = 26/277 (9%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVA---SSFASSPKRVSPAVMLFTMPYFHIYGL 249
++A ++Y+SG+TG+ KGV TH L + +++A V++ P +
Sbjct: 1274 NLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALD----DSDVLMQKAPISFDVSV 1329
Query: 250 FFCF----RAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD 305
+ CF L+ R D + + + V+++ VT PP++
Sbjct: 1330 WECFWPLITGCRLVLAGPGEHR-DPQRIAELVQQYGVTTLHFVPPLLQLFID--EPLAAA 1386
Query: 306 LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV--FRTVGPDECRRWGS 363
+SL + G L + + P+V L YG TE+ V ++ D R
Sbjct: 1387 CTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGER--SP 1444
Query: 364 TGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGW---- 419
GR + +++D E + LPPG GEL I G + +GY+G P +T+ +PD
Sbjct: 1445 IGRPLGNVLCRVLDAEL-NLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDG 1503
Query: 420 ---MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
RTGD + DG L + RL +K +G++V P
Sbjct: 1504 ARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEP 1540
|
Length = 4334 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 5e-09
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 20/131 (15%)
Query: 315 GAAPLGKDT---IMAFASKFP--KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSA 369
A L +D + A A + ++ + G TE+ P + R G G +
Sbjct: 297 AGAALPQDVWDRLQALAVRTTGERIPMTSGLGATETAPTATFVHWPTD--RSGVIGLPAP 354
Query: 370 GLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGD-LCYI 428
G E K+V P G + E+ ++GP + GY +PE+T+ +G+ R GD + ++
Sbjct: 355 GTELKLV--------PNGGKLEVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIGDAVRFV 406
Query: 429 DED----GFLF 435
D D G +F
Sbjct: 407 DPDDPERGLVF 417
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 2e-08
Identities = 29/56 (51%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIY 247
DVA I Y+SGTTG KGV+LTH NL A VA S S+ S V + +P HIY
Sbjct: 221 EDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSD-VHISYLPLAHIY 275
|
Length = 651 |
| >gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 4e-08
Identities = 65/284 (22%), Positives = 115/284 (40%), Gaps = 44/284 (15%)
Query: 197 IMYSSGTTGRVKGVMLTH-RNLTAAVASSFASSPKRVSPAVMLFTMP-----YFH--IYG 248
I+Y+SGTTG K V+ ++ +L + K + ++F+ FH +YG
Sbjct: 259 ILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIP--TVVFSHSSIGWVSFHGFLYG 316
Query: 249 LFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD------ 302
+ E ++ + + +E+ +VTH P + + K TD
Sbjct: 317 SLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIK---TDPEATII 373
Query: 303 --GYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRR 360
YDLS+L+ + CG + +++I + K+ + YG TE G
Sbjct: 374 RSKYDLSNLKEIWCGGEVI-EESIPEYIENKLKIKSSRGYGQTEIGITYLYCYGHIN-IP 431
Query: 361 WGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD--- 417
+ +TG S ++ I+ + G L + GE++ + P P + T +
Sbjct: 432 YNATGVPSIFIKPSILSED-GKELNVNEIGEVAFKLPM--------PPSFATTFYKNDEK 482
Query: 418 ---------GWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVL 452
G+ +GDL + DE+G+ IV R D IK G +V
Sbjct: 483 FKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQ 526
|
Length = 647 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 7e-08
Identities = 68/305 (22%), Positives = 125/305 (40%), Gaps = 38/305 (12%)
Query: 170 EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLT---AAVASSFA 226
E D+ ++ S L + Q A ++Y+SG+TG+ KGV+++H + AV F
Sbjct: 2312 EDDAAALAAYSDAPLPFLSLPQHQ-AYLIYTSGSTGKPKGVVVSHGEIAMHCQAVIERFG 2370
Query: 227 SSPKRVSPAVMLFTMPYFHIYGLFFCFRAA------ALMETAVVMQR----FDLKMMLKA 276
H Y + F AA L+ A V+ R + + + +
Sbjct: 2371 MRADDCE----------LHFYSI--NFDAASERLLVPLLCGARVVLRAQGQWGAEEICQL 2418
Query: 277 VEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVL 336
+ E +V+ TP +++ + G + + G L + + F +
Sbjct: 2419 IREQQVSILGFTPSYGSQLAQWLAGQG-EQLPVRMCITGGEALTGEHLQRIRQAFAPQLF 2477
Query: 337 VQAYGLTESTAGVFRTVGPDECRRWGST---GRLSAGLEAKIVDPETGDSLPPGKEGELS 393
AYG TE+ + P++ ++ GR+ A I+D + +P G GEL
Sbjct: 2478 FNAYGPTETVVMPLACLAPEQLEEGAASVPIGRVVGARVAYILDADLA-LVPQGATGELY 2536
Query: 394 IRGPTIMKGYVGEPEVTSATLLPDGW-------MRTGDLCYIDEDGFLFIVDRLKDLIKY 446
+ G + +GY P +T+ + D + RTGDL + DG + V R+ +K
Sbjct: 2537 VGGAGLAQGYHDRPGLTAERFVADPFAADGGRLYRTGDLVRLRADGLVEYVGRIDHQVKI 2596
Query: 447 KGYQV 451
+G+++
Sbjct: 2597 RGFRI 2601
|
Length = 4334 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 1e-07
Identities = 96/456 (21%), Positives = 147/456 (32%), Gaps = 116/456 (25%)
Query: 70 VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
V+++E +R+N +A L L DT +L N ++ L LG + N
Sbjct: 4 VTYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLNT-- 61
Query: 130 TESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDS----------PEFDSMTMSW- 178
I S++H R ++ D P +M +
Sbjct: 62 ---NIRSG-------------SLLHCFRCCGARVLVADPELLEAVEEILPALRAMGVRVF 105
Query: 179 ------------NSKHELD-----------RAKVCQSDVAAIMYSSGTTGRVKGVMLTHR 215
+ ++D R+ V A +Y+SGTTG K ++H
Sbjct: 106 YLSHTSPPEGVISLLAKVDAASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHL 165
Query: 216 NLTAAVASSFASSPKRVSPAVMLFTMPYFH----IYGLFFCFRAAALMETAVVMQRFDLK 271
+ S S + V+ T+P +H + G+ C A T V+ +F
Sbjct: 166 RVLQC--SGMLSLCGVTADDVVYTTLPLYHSSGALLGIVGCIGLGA---TLVLKPKFSAS 220
Query: 272 MMLKAVEEFRVT----------HAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGK 321
++ VT + P S L A G L
Sbjct: 221 QFWDDCRKYNVTVFQYIGELLRYLCNQPQ-----SDNDRDHKVRL------AIGNG-LRP 268
Query: 322 DTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDP--- 378
D F +F + + + Y TE G G R G+ GR A K++ P
Sbjct: 269 DVWREFLRRFGPIHVWETYASTEGNIGFINYTG-----RVGAVGR--ASCLYKLLSPFEL 321
Query: 379 -------------ETGDSLP--PGKEGEL--SIRGPTIMKGYVGEPEVTSATLLP----- 416
G +P G+ G L I + GY G E+T LL
Sbjct: 322 IKYDVEKDEPVRDAQGFCIPVGKGEPGLLISKITSQSPFLGYAGPRELTEKKLLRDVFKK 381
Query: 417 -DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQV 451
D + TGDL D FL+ DR D ++KG V
Sbjct: 382 GDVYFNTGDLLVQDRQNFLYFHDRTGDTFRWKGENV 417
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 2e-07
Identities = 71/319 (22%), Positives = 119/319 (37%), Gaps = 27/319 (8%)
Query: 152 VVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVC---QSDVAAIMYSSGTTGRVK 208
V LA ++ P D + ++HE + V ++ + I+Y+SGTTG+ K
Sbjct: 195 VDRGLAPMRLI------PGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPK 248
Query: 209 GVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVM--- 265
GV A+A S + + VM + G + A L A V+
Sbjct: 249 GVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEG 308
Query: 266 --QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD--GYDLSSLETVACGAAPLGK 321
D + VE + V P + + K + +DLSSL + PL +
Sbjct: 309 LPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDE 368
Query: 322 DTIMAFASKFPKVVLVQAYGLTES---TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDP 378
T K V + Y TE+ + + + GS G G +++D
Sbjct: 369 PTAHWITDGLGKPV-IDNYWQTETGWPVLAIMPGLDLKPV-KLGSPGLPMYGYHLRVLDE 426
Query: 379 ETGDSLPPGKEGELSIRGP------TIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDG 432
TG P ++G L++ P + + G T + + D DEDG
Sbjct: 427 ATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDG 486
Query: 433 FLFIVDRLKDLIKYKGYQV 451
+ FI+ R D+I G+++
Sbjct: 487 YTFILGRTDDVINVAGHRL 505
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 3e-07
Identities = 48/200 (24%), Positives = 87/200 (43%), Gaps = 23/200 (11%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVI---ISPA 125
RV+++E R+ ++A L ++ LS +LS NSIE +L + + GV +SPA
Sbjct: 25 RVTYAEALRQVRAIAQALLDL-GLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVSPA 83
Query: 126 NPVNTE--SEISRQIQLSNPVIAFATSSVVHKLA----KLKHRTILIDSPEFDSMTMSWN 179
+ ++ +++ L P FA A L ++ +++
Sbjct: 84 YSLLSKDFAKLRHIFDLLTPGAVFAEDGAAFARALAALGLAGVPVVAVRGAPGGPAIAFA 143
Query: 180 S------KHELDRA--KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASS 228
+ +D A V VA +++SG+TG K V+ THR L A +A +
Sbjct: 144 ALLATPPTAAVDAAFAAVGPDTVAKYLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPFL 203
Query: 229 PKRVSPAVMLFTMPYFHIYG 248
+ P V++ +P+ H +G
Sbjct: 204 TEE--PPVLVDWLPWNHTFG 221
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 5e-07
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 362 GSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG--PTIMKGYVGEPEVTSATLLPD-- 417
GS R G+E IVD E G+ + G EG L I+ P +++ G+ E T
Sbjct: 404 GSATRPFPGVEPAIVDEE-GNEVEGGVEGYLVIKRPWPGMLRTIYGDHERYVKTYFSKFP 462
Query: 418 GWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGY 449
G+ TGD DEDG+ +I+ R+ D+I G+
Sbjct: 463 GYYFTGDGARRDEDGYYWILGRVDDVINVSGH 494
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 6e-07
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 15/108 (13%)
Query: 333 KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGEL 392
++ ++ G+TE+ T GP R G+ G + G E K+V G L E+
Sbjct: 365 RIRMMTGLGMTETAPSATFTTGPLS--RAGNIGLPAPGCEVKLVP--VGGKL------EV 414
Query: 393 SIRGPTIMKGYVGEPEVTSATLLPDGWMRTGD-LCYIDED----GFLF 435
++GP + GY PE+T+ +G+ R+GD + ++D G +F
Sbjct: 415 RVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDPADPERGLMF 462
|
Length = 614 |
| >gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 8e-07
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 155 KLAKLKHR--TILIDSPEFDSMTMSWNSKHELDRAKVCQSD---VAAIMYSSGTTGRVKG 209
K+ LK + + I FD MT K++ K+ D + +I+Y+SGT+G+ KG
Sbjct: 267 KIKDLKEKAKKLGISIILFDDMT-----KNKTTNYKIQNEDPDFITSIVYTSGTSGKPKG 321
Query: 210 VMLTHRNLTAAVAS-SFASSPKRVSPAVMLFTMPYFHIY 247
VML+++NL V S K+ +P L +P HIY
Sbjct: 322 VMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIY 360
|
Length = 746 |
| >gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 2e-06
Identities = 81/358 (22%), Positives = 137/358 (38%), Gaps = 27/358 (7%)
Query: 92 LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSS 151
LS D + +S ++ L + L+ GV+ ANP + + + + P + + +
Sbjct: 52 LSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDA 111
Query: 152 VVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI-MYSSGTTGRVKGV 210
+ + + + ++ E MS ++ + D A Y+SGTTG K
Sbjct: 112 LRDRFQP----SRVAEAAEL----MSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAA 163
Query: 211 MLTHRNLTAAVASSFASSPKRVSPA-VMLFTMPYFHIYGL----FFCFRAAALMETAVVM 265
+ H + V + R++P L + + YGL +F
Sbjct: 164 IHRHADPLTFV-DAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSAP 222
Query: 266 QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIM 325
+ +L A V + P + S D + SL V L
Sbjct: 223 VTPEAAAILSARFGPSVLYG--VPNFFARVIDSCSPDSF--RSLRCVVSAGEALELGLAE 278
Query: 326 AFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLP 385
F + ++ G TE F + DE R G+ GR+ E ++V P+ G +
Sbjct: 279 RLMEFFGGIPILDGIGSTE-VGQTFVSNRVDEWRL-GTLGRVLPPYEIRVVAPD-GTTAG 335
Query: 386 PGKEGELSIRGPTIMKGYVGEPEVTSATLLPD-GWMRTGDLCYIDEDGFLFIVDRLKD 442
PG EG+L +RGP I KGY P+ + + + GW+ T D ID DG++ R D
Sbjct: 336 PGVEGDLWVRGPAIAKGYWNRPD----SPVANEGWLDTRDRVCIDSDGWVTYRCRADD 389
|
Length = 705 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 19/29 (65%), Positives = 23/29 (79%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAV 221
D+A IMY+SGTTG KGVM TH +LTA +
Sbjct: 265 DLALIMYTSGTTGDPKGVMHTHGSLTAGI 293
|
Length = 700 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 75/298 (25%), Positives = 118/298 (39%), Gaps = 71/298 (23%)
Query: 193 DVAAIMYSSGTTGRVKGVM------------------LTHRNLTAAVAS-SFASSPKRVS 233
++A ++Y+SG+TG KGVM L+ ++ A AS SF S
Sbjct: 3870 NLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDIS----- 3924
Query: 234 PAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDL----KMMLKAVEEFRVTHAAVTP 289
+ F AA L V + + + +L V+ +T P
Sbjct: 3925 ----------------VWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVP 3968
Query: 290 PIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFAS----KFPKVVLVQAYGLTES 345
++ M + D L L + P G+ A ++P++ LV AYG E
Sbjct: 3969 SLIQGML---AEDRQALDGLRWML----PTGEAMPPELARQWLQRYPQIGLVNAYGPAEC 4021
Query: 346 TAGV--FRTVGPDECRRWGS---TGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIM 400
+ V FR D GS G + ++D E + +P G GEL + G +
Sbjct: 4022 SDDVAFFRV---DLASTRGSYLPIGSPTDNNRLYLLD-EALELVPLGAVGELCVAGTGVG 4077
Query: 401 KGYVGEPEVTSATLLPDGW-------MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQV 451
+GYVG+P T+ +P + RTGDL DG L V R+ +K +GY++
Sbjct: 4078 RGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRI 4135
|
Length = 4334 |
| >gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 71/292 (24%), Positives = 108/292 (36%), Gaps = 65/292 (22%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNL---TAAVASSFASSPKRVSPAVMLFTMPYFHIYG 248
++ I SSGTTG+ T +++ +A S S+ R V + YG
Sbjct: 90 EEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQN-----AYGYG 144
Query: 249 LF---FCFRAAA--LMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDG 303
LF A + T + + + + L+ +++F+ T A TP ++ +++ +G
Sbjct: 145 LFTGGLGLHYGAERIGATVIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEG 204
Query: 304 YDL--SSLETVACGAAPLGKDTIMAFASKFPKVVLVQA---YGLTESTAGVFRTVGPDEC 358
D SL+ GA P ++ +A YGLTE G EC
Sbjct: 205 IDPDKLSLKKGIFGAEPWSEEM----RKVIENRFGCKAFDIYGLTEGFG-----PGAGEC 255
Query: 359 RRWGSTGRLSAGLEA---KIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLL 415
L + +IVDPETG+ LP G+ GEL I T L
Sbjct: 256 ---TERNGLHIWEDHFIFEIVDPETGEQLPDGERGELVI------------------TTL 294
Query: 416 PDGWM-----RTGDLCYIDED------GFLFIVD---RLKDLIKYKGYQVLP 453
M RTGD+ I D I R D++ +G V P
Sbjct: 295 TKEGMPLIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFP 346
|
Length = 438 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 24/188 (12%)
Query: 277 VEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKF--P 332
+E+ +VT P + A+ + G +DLSSL + P+ + M +
Sbjct: 326 IEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKE 385
Query: 333 KVVLVQAYGLTE-------STAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLP 385
+ +V + TE G T P GS G+E +VD E G+ +
Sbjct: 386 RCPIVDTWWQTETGGIMITPLPGATPTK-P------GSATLPFFGIEPAVVD-EEGNPVE 437
Query: 386 -PGKEGELSIRG--PTIMKGYVGEPEVTSATLLPD--GWMRTGDLCYIDEDGFLFIVDRL 440
PG+ G L I+ P +++ G+ E T G+ TGD D+DG+++I R+
Sbjct: 438 GPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWITGRV 497
Query: 441 KDLIKYKG 448
D+I G
Sbjct: 498 DDVINVSG 505
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|213281 cd05913, PaaK, Phenylacetate-CoA ligase (also known as PaaK) | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 59/228 (25%), Positives = 84/228 (36%), Gaps = 47/228 (20%)
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHR------NLTAAVASSFASSPK---RVSPAVMLF 239
V + V I SSGTTG+ V T NL A + P S LF
Sbjct: 75 VPKEQVVRIHASSGTTGKPTVVGYTQHDIDTWANLVARSLRAAGGRPGDKFHNSYGYGLF 134
Query: 240 TMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG 299
T GL + A L T V M + ++ + +F+ VTP + +++
Sbjct: 135 TG------GLGAHYGAERLGCTVVPMSGGQTEKQVQLIRDFKPDIIHVTPSYALNLAEEF 188
Query: 300 STDGYD--LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDE 357
G D SSL+ GA P + + + + YGL+E +GP
Sbjct: 189 ERQGIDPAESSLKIGVFGAEPWTQAQRREIERRL-GIDALDIYGLSE-------VMGP-- 238
Query: 358 CRRWGSTGRLSAGLEAK-------------IVDPETGDSLPPGKEGEL 392
G +E K I+DPETG+ LP G+ GEL
Sbjct: 239 -------GVAFECVETKDGPTIWEDHFYPEIIDPETGEPLPDGEIGEL 279
|
PaaK catalyzes the first step in the aromatic degradation pathway, by converting phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Phenylacetate-CoA ligase has been found in proteobacteria as well as gram positive prokaryotes. The enzyme is specifically induced after aerobic growth in a chemically defined medium containing PA or phenylalanine (Phe) as the sole carbon source. PaaKs are members of the adenylate-forming enzyme (AFE) family. However, sequence comparison reveals divergent features of PaaK with respect to the superfamily, including a novel N-terminal sequence. Length = 424 |
| >gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 17/116 (14%)
Query: 340 YGLTESTAGVFRTVGPDECRRWG-STGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPT 398
YG+TE TA T+ PD+ S+G++ A+I ++P + G ++I+ +
Sbjct: 261 YGMTE-TASQIATLKPDDFLAGNNSSGQVLPH--AQI-------TIPANQTGNITIQAQS 310
Query: 399 IMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPL 454
+ GY P+ L G T DL Y+D G+L I+ R I G V P
Sbjct: 311 LALGYY--PQ----ILDSQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPA 360
|
Length = 452 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 9e-04
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 170 EFDSMTMSWNSKHELDRAKVCQ-SDVAAIMYSSGTTGRVKGVMLTHRNLT---AAVASSF 225
EF + S + + + + ++Y+SGTTG KGVML+H N+T A
Sbjct: 127 EFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNITWTAKAAVKHM 186
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 7/58 (12%)
Query: 195 AAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSPAVMLFTMPYFHIYGL 249
A I+Y+SGTTG KGV+L+ R + A A+A ++ + V++ +P FH++GL
Sbjct: 131 ALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADD----VLVHGLPLFHVHGL 184
|
Length = 471 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 39/184 (21%), Positives = 70/184 (38%), Gaps = 42/184 (22%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANP- 127
+S++E + LA+ L+++ + D N E I + S+G I S +P
Sbjct: 86 EISWAELRSQVARLAAALRDLG-VKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSPD 144
Query: 128 VNTESEISR--QIQLSNPVIAFATSSVV------HKLAKLKH---------RTILIDS-- 168
E+ + R QI+ P + FA V + K+ +++
Sbjct: 145 FGVEAVLDRFGQIE---PKVLFAVDGYVYNGKEHDRREKIAEIVKGLPSLEAVVVVPYLS 201
Query: 169 -------PEFDSMTMSW----NSKHELDRAKVCQSDVAAIMYSSGTTGRVK-------GV 210
+F ++T+ W + L+ ++ I+YSSGTTG K G
Sbjct: 202 SDAQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWILYSSGTTGLPKCIVHGAGGT 261
Query: 211 MLTH 214
+L H
Sbjct: 262 LLQH 265
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 32/176 (18%), Positives = 56/176 (31%), Gaps = 35/176 (19%)
Query: 52 PWRD-----DDTVALINSVTGLRVSFSEFTRRTNSLASYL--QNVTRLSKNDTAFVLSTN 104
PWR +AL + +++ + R + LA+ Q V + N
Sbjct: 8 PWRHWAQVRPQAIALRLN--DEVLTWQQLCARIDQLAAGFAQQGVVE---GSGVALRGKN 62
Query: 105 SIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLA---KLKH 161
S E + Y +LL G + P NP + + +L L
Sbjct: 63 SPETLLAYLALLQCGARVLPLNPQLPQPLL-------------------EELLPSLTLDF 103
Query: 162 RTILIDSPEFDSMTM-SWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRN 216
+L F ++T +A + +SG+TG K + T +
Sbjct: 104 ALVLEGENTFSALTSLHLQLVEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQA 159
|
Length = 458 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.004
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 362 GSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG--PTIMKGYVGEPEVTSATLLPD-- 417
GS R G++ +VD E G+ L G+ G L I+ P +M+ G+ E T
Sbjct: 424 GSATRPLPGIQPAVVD-EEGNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFK 482
Query: 418 GWMRTGDLCYIDEDGFLFIVDRLKDLIKYKG 448
G TGD DEDG+ +I R+ D++ G
Sbjct: 483 GMYFTGDGARRDEDGYYWITGRVDDVLNVSG 513
|
Length = 637 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 456 | |||
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 100.0 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 99.97 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.96 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.95 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.95 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.92 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 99.9 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.72 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.62 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 99.32 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 98.18 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 98.04 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 97.95 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 97.84 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 97.78 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 95.84 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 87.62 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 86.95 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 81.63 |
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-70 Score=527.43 Aligned_cols=394 Identities=38% Similarity=0.601 Sum_probs=343.8
Q ss_pred CCC-cEEEECCC-CceecHHHHHHHHHHHHHHhHhhcC--CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCH
Q 012774 56 DDT-VALINSVT-GLRVSFSEFTRRTNSLASYLQNVTR--LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTE 131 (456)
Q Consensus 56 p~~-~A~~~~~~-~~~~Ty~eL~~~~~~~a~~L~~~~g--i~~gd~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~ 131 (456)
+++ +++++... ++.+||+|+.+++.++|..|.+ +| +++||+|++++||+++++++++||+.+|+++.+++|.+++
T Consensus 30 ~~~~~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~-~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~ 108 (537)
T KOG1176|consen 30 LDRNTSLVYQDSDGRELTYSELHDRCRRLASALSE-LGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTA 108 (537)
T ss_pred ccCcceEEEecCCCcEEcHHHHHHHHHHHHHHHHh-cCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCH
Confidence 444 67776532 5899999999999999999997 65 8999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCeEEEEccchHHHHhcc----CCeEEEEcCC----c----------hhhhhcccCCCccccccCCCCCC
Q 012774 132 SEISRQIQLSNPVIAFATSSVVHKLAKL----KHRTILIDSP----E----------FDSMTMSWNSKHELDRAKVCQSD 193 (456)
Q Consensus 132 ~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~----~----------~~~~~~~~~~~~~~~~~~~~~~~ 193 (456)
.++.+.+++++++++|++.+...++.+. ..+++++... . +..+...... .. ......++
T Consensus 109 ~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~dd 185 (537)
T KOG1176|consen 109 SEIAKQLKDSKPKLIFVDEDFYDKISEATSKLALKIIVLTGDEGVISISDLVEDLDAFEDLMPEGLP--DG-IRPVSEDD 185 (537)
T ss_pred HHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcCCceEEEecccCccccccccccccchhhccccCCC--cc-cccCCCCC
Confidence 9999999999999999999888777532 2455554432 1 1111111111 11 34556699
Q ss_pred EEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHH-HhHhcceEEEecCCCHHH
Q 012774 194 VAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFR-AAALMETAVVMQRFDLKM 272 (456)
Q Consensus 194 ~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~-~l~~G~~~~~~~~~~~~~ 272 (456)
++.++|||||||.||||++||+++..+........ .....++.++.+|++|++|+..++. .+..|++++..+.|+++.
T Consensus 186 ~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~-~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~ 264 (537)
T KOG1176|consen 186 TAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGW-ELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAEL 264 (537)
T ss_pred eEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcc-cCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHH
Confidence 99999999999999999999999998877665555 5667899999999999999977776 555666666667889999
Q ss_pred HHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccc
Q 012774 273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352 (456)
Q Consensus 273 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~ 352 (456)
+++.|++|++|+++++|+++..|++.+...+.+++++|.+.+||+++++++.+++++.+|...+.+.||+||+++.++.+
T Consensus 265 ~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~ 344 (537)
T KOG1176|consen 265 FLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSN 344 (537)
T ss_pred HHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeec
Confidence 99999999999999999999999999877788999999999999999999999999999779999999999999888776
Q ss_pred cCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCC
Q 012774 353 VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDG 432 (456)
Q Consensus 353 ~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg 432 (456)
...++ .+.+++|+++++++.++.+ ++|+.+++++.||||++|+.++.||++||+.|++.|+.+|||+|||+|++|+||
T Consensus 345 ~~~~e-~k~~svG~~~~g~~~~v~~-e~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG 422 (537)
T KOG1176|consen 345 DWGPE-RKPGSVGRLLPGVRVKVLD-ETGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDG 422 (537)
T ss_pred CCCcc-CcccccCccccceEEEeeC-CCCCCCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCC
Confidence 65555 6889999999999999888 999999999999999999999999999999999999877999999999999999
Q ss_pred cEEEecccccceeeCCeeecCCCC
Q 012774 433 FLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 433 ~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+|+|.+|++|+||.+|++|+|+|+
T Consensus 423 ~l~IvdR~KdlIk~~G~qv~P~Ei 446 (537)
T KOG1176|consen 423 YLYIVDRSKDLIKYGGEQVSPAEI 446 (537)
T ss_pred eEEEecchhhheeeCCEEeCHHHH
Confidence 999999999999999999999985
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-67 Score=475.39 Aligned_cols=412 Identities=28% Similarity=0.360 Sum_probs=360.6
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
-|+++.+.-.+++. ||+.|.++...+.++||+|+.+.++++|.+|.+ +|+++||+|++..||+.+|+...+||.+
T Consensus 50 ~Tigq~l~~~t~~v----~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~-lGL~kGDrVgvwgpN~~~w~l~~lA~A~ 124 (596)
T KOG1177|consen 50 ETIGQLLETTTERV----PDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLS-LGLKKGDRVGVWGPNSYEWVLCQLACAR 124 (596)
T ss_pred ccHHHHHHHHhhcc----CcceEEEEeeccchhhHHHHHHHHHHHHhhHHh-hcCCCCCEEEEecCChHHHHHHHHHHHH
Confidence 79999999999999 999999998888999999999999999999999 9999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHH-----HHhc------------c------CCeEEEEcCC-----
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH-----KLAK------------L------KHRTILIDSP----- 169 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~------------~------~~~~~~~~~~----- 169 (456)
+|.+.+++||.+...+++..|++.+.+++|+.+.+.. .+.+ + ..+.+++.+.
T Consensus 125 AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~~~~ 204 (596)
T KOG1177|consen 125 AGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADEDHPLP 204 (596)
T ss_pred hceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCCCcCC
Confidence 9999999999999999999999999999998764332 1110 0 1122222221
Q ss_pred ---chhhhhcccCCCc----cccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecc
Q 012774 170 ---EFDSMTMSWNSKH----ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMP 242 (456)
Q Consensus 170 ---~~~~~~~~~~~~~----~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p 242 (456)
-+.+++.....+. ........+++++.|.|||||||.||++.+||.+++++........ +..+.+++++..|
T Consensus 205 Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~-g~~e~~~i~~~~P 283 (596)
T KOG1177|consen 205 GAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARA-GYNEKHRICIPNP 283 (596)
T ss_pred CceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHh-CcCcceEEEecCc
Confidence 1444443332211 1122345779999999999999999999999999999999988888 7888889999999
Q ss_pred hhhHhhH-HHHHHHhHhcceEEEe-cCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCC
Q 012774 243 YFHIYGL-FFCFRAAALMETAVVM-QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLG 320 (456)
Q Consensus 243 ~~~~~g~-~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~ 320 (456)
++|++|. ..+++++..|++++++ +.|++...++.|.++++|.++++|+++..|++.+.....+++++|..+.||++++
T Consensus 284 l~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~lr~~vigGa~~s 363 (596)
T KOG1177|consen 284 LYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSSLRKGVIGGAPVS 363 (596)
T ss_pred hHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhhhhhheeCCCCCC
Confidence 9999996 8889999999999996 5799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCceEeccCcccccccccccc-CCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCc
Q 012774 321 KDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV-GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTI 399 (456)
Q Consensus 321 ~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~-~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~ 399 (456)
+++.+.+.+...=..+...||+||++...+... .+.......++|+.+++.+..|+| ..|..++-|..|||+++|.+.
T Consensus 364 ~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~~~Gel~iRGY~t 442 (596)
T KOG1177|consen 364 PELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLGTKGELLIRGYST 442 (596)
T ss_pred HHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccccCCCceEEEEechh
Confidence 999999999774345888999999997766543 333344567999999999999999 889999999999999999999
Q ss_pred ccccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 400 MKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 400 ~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+.|||++++.|.+....|.||+|||+|.+|++|+++++||.+|+|+.+|++|||.|+
T Consensus 443 Ml~Ywg~~~kT~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~El 499 (596)
T KOG1177|consen 443 MLGYWGEEEKTKETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTEL 499 (596)
T ss_pred heeecCCcccchhhcccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHH
Confidence 999999999999999899999999999999999999999999999999999999874
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-66 Score=517.43 Aligned_cols=412 Identities=33% Similarity=0.514 Sum_probs=349.0
Q ss_pred CCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
.+++.+++.+.++.+ |+++|+++.....++||+||.++++++|..|++ .|+++||+|+|+++|++++++++|||+
T Consensus 10 ~~~~~~~l~~~a~~~----~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~-~~v~~gdrVail~~N~~e~~~~~~a~~ 84 (534)
T COG0318 10 ELTLASLLERAARRN----PDRPALIFLGRGGRLTYRELDRRANRLAAALQA-LGVKPGDRVAILLPNSPEFLIAFLAAL 84 (534)
T ss_pred cccHHHHHHHHHHhC----CCceEEEEcCCCceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 479999999999999 999999997333349999999999999999999 889999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccC-----CeEEE-EcCC------chhhhhcccCCCccc
Q 012774 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK-----HRTIL-IDSP------EFDSMTMSWNSKHEL 184 (456)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~-~~~~------~~~~~~~~~~~~~~~ 184 (456)
++|++++|++|.+...++.++++.++++++++++.......... ...+. .... .++......... ..
T Consensus 85 ~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 163 (534)
T COG0318 85 RAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLPITLEALAAEGPGP-DA 163 (534)
T ss_pred hcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecccccccccccHHHHhhccCCc-cc
Confidence 99999999999999999999999999999999987433333211 11111 1111 233332221111 11
Q ss_pred cccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCC--CCCCcEEEEecchhhHhhHHHHH-HHhHhcce
Q 012774 185 DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK--RVSPAVMLFTMPYFHIYGLFFCF-RAAALMET 261 (456)
Q Consensus 185 ~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~g~~~~~-~~l~~G~~ 261 (456)
......++++++++|||||||.||+|++||+++..+.......+ . ....|++++++|++|.+|+...+ ..+..|++
T Consensus 164 ~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~-~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~ 242 (534)
T COG0318 164 DARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL-GGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGT 242 (534)
T ss_pred ccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHh-cccCCCCceEEEecChHHHHHHHHHHHHHHHcCCE
Confidence 11225789999999999999999999999999999888777777 4 78889999999999999996555 55889999
Q ss_pred EEEec--CCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCC-ceEEEecCCCCCHHHHHHHHHhCCCCceEe
Q 012774 262 AVVMQ--RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSS-LETVACGAAPLGKDTIMAFASKFPKVVLVQ 338 (456)
Q Consensus 262 ~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~-lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~ 338 (456)
+++.+ .+++..++..+.++++|+++++|+++..+++.......++.+ +|.++.||+++++++++++++.|+...+.+
T Consensus 243 ~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~ 322 (534)
T COG0318 243 LVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILE 322 (534)
T ss_pred EEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccccccceEEEEecCCcCCHHHHHHHHHHhCCCceEE
Confidence 99887 599999999999999999999999999999988777666665 999999999999999999999996578999
Q ss_pred ccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCC
Q 012774 339 AYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG 418 (456)
Q Consensus 339 ~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g 418 (456)
.||+||++..++.....+...+.+++|+|+|+++++|+|+++++.++ |++|||+++||+++.||+++|+.|.+.|..+|
T Consensus 323 ~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~g 401 (534)
T COG0318 323 GYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDG 401 (534)
T ss_pred eecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCC
Confidence 99999999776664333202356778999999999999976665666 99999999999999999999999999886569
Q ss_pred eeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 419 WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 419 ~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
||+|||+|++|+||+++|.||.+|+|+++|++|+|.|+
T Consensus 402 W~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~ei 439 (534)
T COG0318 402 WLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEI 439 (534)
T ss_pred eeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHH
Confidence 99999999999999999999999999999999999874
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-65 Score=527.36 Aligned_cols=409 Identities=23% Similarity=0.311 Sum_probs=330.2
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEEC-----CCC--ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINS-----VTG--LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI 110 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~-----~~~--~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~ 110 (456)
.|+.+++.+.++++ |+++|+.+. ..+ .++||+||.++++++|++|.+ +|+++||+|+|+++|+++|++
T Consensus 45 ~t~~~~l~~~a~~~----pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-~Gv~~Gd~Vai~~~n~~e~~~ 119 (666)
T PLN02614 45 DSCWDVFRMSVEKY----PNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRS-VGVKDEAKCGIYGANSPEWII 119 (666)
T ss_pred CcHHHHHHHHHHhC----CCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHH
Confidence 49999999999999 999999742 112 358999999999999999998 899999999999999999999
Q ss_pred HHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-C-----C-eEEEEcCC--------------
Q 012774 111 LYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-K-----H-RTILIDSP-------------- 169 (456)
Q Consensus 111 ~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-~-----~-~~~~~~~~-------------- 169 (456)
++|||+++|++++|+++.++.+++.+++++++++++|++++....+... . . .++.++..
T Consensus 120 ~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~ 199 (666)
T PLN02614 120 SMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLV 199 (666)
T ss_pred HHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccceEEEEeCCCChHHhhhhhhcCcE
Confidence 9999999999999999999999999999999999999987665544211 1 2 23333321
Q ss_pred --chhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCC----CCCCCCcEEEEecch
Q 012774 170 --EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS----PKRVSPAVMLFTMPY 243 (456)
Q Consensus 170 --~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~----~~~~~~~~~~~~~p~ 243 (456)
.++++....... ........++++++++|||||||.||||++||+++...+......+ .....+|++++.+|+
T Consensus 200 ~~~~~~~~~~~~~~-~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl 278 (666)
T PLN02614 200 IYAWDEFLKLGEGK-QYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPL 278 (666)
T ss_pred EEEHHHHHhhcccC-CCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccH
Confidence 122222111100 1111234578999999999999999999999999988776544332 135688999999999
Q ss_pred hhHhhHHHHHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCC----------------------
Q 012774 244 FHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST---------------------- 301 (456)
Q Consensus 244 ~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------- 301 (456)
+|+++......++..|+++++.+ +++..+++.|+++++|+++++|+++..+......
T Consensus 279 ~H~~~~~~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 357 (666)
T PLN02614 279 AHIFDRVIEECFIQHGAAIGFWR-GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFG 357 (666)
T ss_pred HHHHHHHHHHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 99999865666788999988875 5899999999999999999999999987642100
Q ss_pred ---------CCC-------------CC-CCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccCCCCC
Q 012774 302 ---------DGY-------------DL-SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDEC 358 (456)
Q Consensus 302 ---------~~~-------------~l-~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~ 358 (456)
... .+ +++|.+++||+++++++ ++|.+.++++++++.||+||+++..+... ....
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~~YG~TE~~~~~~~~~-~~~~ 435 (666)
T PLN02614 358 NMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLTESCAGTFVSL-PDEL 435 (666)
T ss_pred HHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEeeCchHhhhhheeeec-cccC
Confidence 000 01 68999999999999875 56667665689999999999976544322 2222
Q ss_pred CCCCccccccCCcEEEEEcCC--CCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEE
Q 012774 359 RRWGSTGRLSAGLEAKIVDPE--TGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFI 436 (456)
Q Consensus 359 ~~~~~~G~~~~~~~~~i~d~~--~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~ 436 (456)
.+.+++|+|+|+++++|+|.+ .+.++++|+.|||+|+|++++.|||++|+.|.+.| .+|||+|||+|++|+||+|+|
T Consensus 436 ~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f-~dGw~~TGDlg~~d~dG~l~i 514 (666)
T PLN02614 436 DMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVL-IDGWLHTGDVGEWQPNGSMKI 514 (666)
T ss_pred CcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHHHhhhhh-ccCCcccceEEEEcCCCCEEE
Confidence 346899999999999999833 34678899999999999999999999999999999 589999999999999999999
Q ss_pred ecccccceee-CCeeecCCCC
Q 012774 437 VDRLKDLIKY-KGYQVLPLLN 456 (456)
Q Consensus 437 ~GR~~d~ik~-~G~~v~p~e~ 456 (456)
.||+||+||+ +|++|+|.||
T Consensus 515 ~gR~kd~ik~~~G~~V~p~eI 535 (666)
T PLN02614 515 IDRKKNIFKLSQGEYVAVENI 535 (666)
T ss_pred EEcchhceecCCCeeecHHHH
Confidence 9999999996 6999999875
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-64 Score=512.06 Aligned_cols=438 Identities=41% Similarity=0.646 Sum_probs=362.1
Q ss_pred CCCCCCCCCceeeCCCCCCCCCCCCCCCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhc
Q 012774 11 TKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVT 90 (456)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~ 90 (456)
.-+.|.+..+.|.++.++.++|. +..+++.+.++.. +.+ |+++|+++...+.++||+||.++++++|+.|.++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~-~~~----~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~ 87 (560)
T PLN02574 14 PPFWYSPETGIYSSKHPPVPLPS-DPNLDAVSFIFSH-HNH----NGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVM 87 (560)
T ss_pred CccccCcCCeeecCCCCCCCCCC-CCCCCHHHHHhcC-ccc----CCCCEEEECCCCCcccHHHHHHHHHHHHHHHHHHh
Confidence 33445555677777765555544 3446777777766 556 99999998755668999999999999999999647
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccCCeEEEEcC--
Q 012774 91 RLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDS-- 168 (456)
Q Consensus 91 gi~~gd~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~-- 168 (456)
|+++||+|+++++|+.+++++++||+++|++++|++|..+.+++.++++.+++++++++++....+......++.++.
T Consensus 88 G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (560)
T PLN02574 88 GVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPLGVPVIGVPENY 167 (560)
T ss_pred CCCCCCEEEEECCCcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhcCCcEEecCccc
Confidence 999999999999999999999999999999999999999999999999999999999998877766554444443321
Q ss_pred ---------CchhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccC----CCCCCCCc
Q 012774 169 ---------PEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFAS----SPKRVSPA 235 (456)
Q Consensus 169 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~----~~~~~~~~ 235 (456)
..++.+...... ........++++++++|||||||.||+|+++|+++...+...... .......+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (560)
T PLN02574 168 DFDSKRIEFPKFYELIKEDFD--FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDN 245 (560)
T ss_pred ccccCccCcccHHHHhhcCCc--ccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCc
Confidence 112222211110 111223456899999999999999999999999998877654321 11123568
Q ss_pred EEEEecchhhHhhH-HHHHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCC-CCCCCCCceEEE
Q 012774 236 VMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST-DGYDLSSLETVA 313 (456)
Q Consensus 236 ~~~~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-~~~~l~~lr~v~ 313 (456)
+++..+|++|.+++ ..++.++..|+++++.+.+++..+++.|+++++|+++++|+++..|.+.... ...+++++|.++
T Consensus 246 ~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~ 325 (560)
T PLN02574 246 VYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVS 325 (560)
T ss_pred EEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEEE
Confidence 88999999999998 4556778889999999999999999999999999999999999999887543 345688999999
Q ss_pred ecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEE
Q 012774 314 CGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELS 393 (456)
Q Consensus 314 ~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~ 393 (456)
+||+++++++.+++++.+++.++++.||+||++...+...........+++|+|+++++++|+|++++++++.|+.|||+
T Consensus 326 ~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~Gei~ 405 (560)
T PLN02574 326 CGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELW 405 (560)
T ss_pred EecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCCeEEE
Confidence 99999999999999999988999999999999866543222233345689999999999999998889999999999999
Q ss_pred EecCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 394 IRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 394 i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|+|+.++.||+++++.+.+.|+.+|||+|||+|++|+||++++.||.||+||++|++|+|.|+
T Consensus 406 v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~ei 468 (560)
T PLN02574 406 IQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADL 468 (560)
T ss_pred EECcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHH
Confidence 999999999999999999988889999999999999999999999999999999999999874
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-66 Score=496.62 Aligned_cols=407 Identities=24% Similarity=0.348 Sum_probs=340.1
Q ss_pred CCCHHHHhhhc-ccCCCCCCCCCcEEEECCC---CceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHH
Q 012774 37 PISAVDYVSSL-RATLPWRDDDTVALINSVT---GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILY 112 (456)
Q Consensus 37 ~~~~~~~l~~~-~~~~~~~~p~~~A~~~~~~---~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~ 112 (456)
.+|+.....++ ..... +|+.|+++.++ .+++||+||.+.++++|+.|++..|+ +||+|++++|+.++.++++
T Consensus 7 ~lN~~~n~~dr~~~~~~---~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~ 82 (528)
T COG0365 7 TLNLALNALDRHLEADR---PDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIAL 82 (528)
T ss_pred eeechhhhhhhhhhccC---CCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHH
Confidence 35665543333 33221 68999987643 27899999999999999999875678 9999999999999999999
Q ss_pred HHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccCC---------eEEEEcC--CchhhhhcccCCC
Q 012774 113 FSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKH---------RTILIDS--PEFDSMTMSWNSK 181 (456)
Q Consensus 113 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---------~~~~~~~--~~~~~~~~~~~~~ 181 (456)
|||+++|++.+|+.+.++++.+..++++++++++|+.+......+.... .+++... ..|.+.......
T Consensus 83 LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~~~~~~~~~~~~~- 161 (528)
T COG0365 83 LATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLGLWYDEAVEKASE- 161 (528)
T ss_pred HHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEeccccccHHHHhhccCC-
Confidence 9999999999999999999999999999999999998776654332111 1333322 334444433221
Q ss_pred ccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhH-HHHHHHhHhcc
Q 012774 182 HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALME 260 (456)
Q Consensus 182 ~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~ 260 (456)
..+......+++++++|||||||+||+|+++|..+...............++|++++..++.|+.|. ..++.++..|+
T Consensus 162 -~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Ga 240 (528)
T COG0365 162 -KFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGA 240 (528)
T ss_pred -CCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHHHHHHhcCC
Confidence 2223347889999999999999999999999998877776666544356799999999999999999 55899999999
Q ss_pred eEEEecC--C-CHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceE
Q 012774 261 TAVVMQR--F-DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLV 337 (456)
Q Consensus 261 ~~~~~~~--~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~ 337 (456)
+.++.+. + +++.+++.|+++++|.++++|+.++.|++......+++++||.+.++|||++++.++++.+.+ +++|.
T Consensus 241 t~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~-g~~i~ 319 (528)
T COG0365 241 TTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEWFYSAL-GVWIL 319 (528)
T ss_pred eEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcccccchhheeeeccCCCCCHHHHHHHHHHh-CCCEe
Confidence 9998853 2 499999999999999999999999999998766678899999999999999999999999999 79999
Q ss_pred eccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecC--CcccccCCCccccccccC
Q 012774 338 QAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP--TIMKGYVGEPEVTSATLL 415 (456)
Q Consensus 338 ~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~--~~~~gy~~~~~~~~~~~~ 415 (456)
+.||+||+|.+...... ..+.++.|+|+||+++.++|++ |+++++|+ |+|+++.+ +++++||++++.+.+.+.
T Consensus 320 d~~gqTEtg~~~~~~~~---~~~~g~~g~p~pG~~~~vvdd~-g~~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~ 394 (528)
T COG0365 320 DIYGQTETGMGFIAGRP---PVKNGSSGLPLPGYAVRRVDDE-GNPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYF 394 (528)
T ss_pred ccccccccCccccCCCC---CcCCCCCCCCCCCceeEEECCC-CCcCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHh
Confidence 99999999955544222 3345666999999999999955 99999999 99999987 889999999999999885
Q ss_pred CCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 416 PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 416 ~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
.. ||.|||.+++|+||+++|+||.||+||+.|+||.|+|+
T Consensus 395 ~~-~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~Ev 434 (528)
T COG0365 395 GR-WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEI 434 (528)
T ss_pred hc-eeecCceeEEccCCCEEEEeeccceEeccCeeccHHHH
Confidence 44 99999999999999999999999999999999999885
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-65 Score=521.86 Aligned_cols=427 Identities=20% Similarity=0.238 Sum_probs=342.8
Q ss_pred eeeCCCCCCCCCCCCCCCCHHHHhhhcccCCCCCCCCCcEEEECCC---CceecHHHHHHHHHHHHHHhHhh--cCCCCC
Q 012774 21 TFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVT---GLRVSFSEFTRRTNSLASYLQNV--TRLSKN 95 (456)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~---~~~~Ty~eL~~~~~~~a~~L~~~--~gi~~g 95 (456)
.|+........+. ....++.++|.+.++++ |+++|+++... .+++||+||.++++++|++|.+. +|+++|
T Consensus 45 ~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~----p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g 119 (746)
T PTZ00342 45 VYCMKDHKKKSSL-YVYKHIMKLLLEKYKLN----NNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEK 119 (746)
T ss_pred ceecCchhhcccc-cccchHHHHHHHHHhhc----CCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcC
Confidence 4555444333332 33579999999999999 99999987422 36899999999999999999972 499998
Q ss_pred -----------CEEEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhc----c-
Q 012774 96 -----------DTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----L- 159 (456)
Q Consensus 96 -----------d~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~----~- 159 (456)
|+|+|+++|+++|+++.+||+++|++.||+++.++.+++.++++++++++++++.+..+.+.+ .
T Consensus 120 ~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~~~~ 199 (746)
T PTZ00342 120 KYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELP 199 (746)
T ss_pred ccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999999999999999999999998777666542 1
Q ss_pred CC-eEEEEcCCch--------------------------------------------------------hhhhcccCC--
Q 012774 160 KH-RTILIDSPEF--------------------------------------------------------DSMTMSWNS-- 180 (456)
Q Consensus 160 ~~-~~~~~~~~~~--------------------------------------------------------~~~~~~~~~-- 180 (456)
.. .+++++.... .++......
T Consensus 200 ~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 279 (746)
T PTZ00342 200 HLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLG 279 (746)
T ss_pred CceEEEEECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCC
Confidence 11 2444443110 000000000
Q ss_pred -------------CccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCC-CCCCCcEEEEecchhhH
Q 012774 181 -------------KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP-KRVSPAVMLFTMPYFHI 246 (456)
Q Consensus 181 -------------~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~ 246 (456)
..........++++++++|||||||.||||++||+++.+.+........ .....+++++.+|++|+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi 359 (746)
T PTZ00342 280 ISIILFDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHI 359 (746)
T ss_pred CEEEEHHHHHhhcccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHH
Confidence 0000112346789999999999999999999999999988765543210 12356899999999999
Q ss_pred hhHHHHHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcC--------CCCCC---------------
Q 012774 247 YGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKG--------GSTDG--------------- 303 (456)
Q Consensus 247 ~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------~~~~~--------------- 303 (456)
+++...+.++..|+++++.+. ++..+++.|+++++|+++++|.++.++... .....
T Consensus 360 ~~~~~~~~~l~~G~~i~~~~~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~ 438 (746)
T PTZ00342 360 YERVIAYLSFMLGGTINIWSK-DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNN 438 (746)
T ss_pred HHHHHHHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhc
Confidence 999777888999999998865 899999999999999999999999988652 10000
Q ss_pred -------------------CCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccCCCCCCCCCcc
Q 012774 304 -------------------YDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGST 364 (456)
Q Consensus 304 -------------------~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~ 364 (456)
...+++|.+++||+++++++.+.|+..+ ++++++.||+||+++.++... ......+++
T Consensus 439 ~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~-g~~i~~gYGlTEt~~~~~~~~--~~~~~~gsv 515 (746)
T PTZ00342 439 GGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLL-NVNYYQGYGLTETTGPIFVQH--ADDNNTESI 515 (746)
T ss_pred CCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhc-CCCEEEeeccCcccceeeecc--CCCCCcccc
Confidence 0026899999999999999999999888 899999999999987665432 223467899
Q ss_pred cccc-CCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccc
Q 012774 365 GRLS-AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDL 443 (456)
Q Consensus 365 G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ 443 (456)
|+|+ |+++++|+|.++......+..|||+++||+++.|||++|+.|++.|+.||||+|||+|++|+||+|+|+||+||+
T Consensus 516 G~p~~pg~e~ki~d~~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~dG~l~i~gR~kdl 595 (746)
T PTZ00342 516 GGPISPNTKYKVRTWETYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGL 595 (746)
T ss_pred cCcCCCcEEEEEecccccccCCCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEECCCCeEEEEccCCCe
Confidence 9998 999999998555444455567999999999999999999999999988999999999999999999999999999
Q ss_pred eee-CCeeecCCCC
Q 012774 444 IKY-KGYQVLPLLN 456 (456)
Q Consensus 444 ik~-~G~~v~p~e~ 456 (456)
||+ +|++|+|.|+
T Consensus 596 Ikls~Ge~I~p~eI 609 (746)
T PTZ00342 596 VKLSQGEYIETDML 609 (746)
T ss_pred EEeCCCEEEchHHH
Confidence 996 6999999874
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-63 Score=513.08 Aligned_cols=411 Identities=23% Similarity=0.260 Sum_probs=337.5
Q ss_pred CCCCCHHHHhhhcccCCCCCCCCCcEEEE---CCC----CceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCc
Q 012774 35 DAPISAVDYVSSLRATLPWRDDDTVALIN---SVT----GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIE 107 (456)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~p~~~A~~~---~~~----~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~ 107 (456)
....++++++...++.+ |+++|+.. .+. .+.+||+||.++++++|++|.+ +|+++||+|+|+++|+++
T Consensus 41 ~~~~tl~~~l~~~a~~~----p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~-~Gv~~gd~Vai~~~n~~e 115 (651)
T PLN02736 41 PEIGTLHDNFVYAVETF----RDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQ-HGIPKGACVGLYFINRPE 115 (651)
T ss_pred CCCCCHHHHHHHHHHhC----CCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCCHH
Confidence 34469999999999999 99999842 111 2469999999999999999998 999999999999999999
Q ss_pred HHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-----CCe-EEEEcCC------------
Q 012774 108 IPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KHR-TILIDSP------------ 169 (456)
Q Consensus 108 ~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~-~~~~~~~------------ 169 (456)
|+++++||+++|++++|+++.++.+++.+++++++++++|++++....+... ..+ +++++..
T Consensus 116 ~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~ 195 (651)
T PLN02736 116 WLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTG 195 (651)
T ss_pred HHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCCCceEEEEECCCchhhhhhhccCC
Confidence 9999999999999999999999999999999999999999998776654321 122 2333211
Q ss_pred ----chhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhh
Q 012774 170 ----EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFH 245 (456)
Q Consensus 170 ----~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 245 (456)
.++++....... ........++++++++|||||||.||||++||+++..++......+ ...++|++++.+|++|
T Consensus 196 ~~~~~~~~~~~~~~~~-~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~-~~~~~d~~l~~lPl~h 273 (651)
T PLN02736 196 VEIVTYSKLLAQGRSS-PQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLST-KFYPSDVHISYLPLAH 273 (651)
T ss_pred cEEEEHHHHHHhcccC-CCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhcc-CCCCCCEEEEeCCHHH
Confidence 122222211100 1112234678999999999999999999999999998888777666 6788999999999999
Q ss_pred HhhHHHHHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCC-------------------------
Q 012774 246 IYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS------------------------- 300 (456)
Q Consensus 246 ~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 300 (456)
.+++...+.++..|+++++.+. ++..+++.|+++++|+++++|.++..+.+...
T Consensus 274 ~~~~~~~~~~l~~G~~i~~~~~-~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (651)
T PLN02736 274 IYERVNQIVMLHYGVAVGFYQG-DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQAL 352 (651)
T ss_pred HHHHHHHHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 9999888889999999988765 78899999999999999999999988755310
Q ss_pred ---CCC-------------CCC-CCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccCCCCCCCCCc
Q 012774 301 ---TDG-------------YDL-SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGS 363 (456)
Q Consensus 301 ---~~~-------------~~l-~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~ 363 (456)
... ..+ +++|.+++||+++++++.+.+++.+ ++++++.||+||+++.++... ......++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~-g~~~~~~YG~TE~~~~~~~~~--~~~~~~~~ 429 (651)
T PLN02736 353 ENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICF-GGRVLEGYGMTETSCVISGMD--EGDNLSGH 429 (651)
T ss_pred HcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHh-CCCeEEEechHHhchheeccC--CCCCCCCc
Confidence 000 011 4899999999999999999999888 789999999999987655432 22245689
Q ss_pred cccccCCcEEEEEcCCCCC---CCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEeccc
Q 012774 364 TGRLSAGLEAKIVDPETGD---SLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRL 440 (456)
Q Consensus 364 ~G~~~~~~~~~i~d~~~~~---~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~ 440 (456)
+|+|+|+++++|+|.+++. ...++..|||+++||+++.||+++++.+.+.|+.+|||+|||+|++|+||+|+|.||.
T Consensus 430 vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d~dG~l~i~GR~ 509 (651)
T PLN02736 430 VGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRK 509 (651)
T ss_pred cCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhccCCCeeccceEEEcCCCcEEEEEec
Confidence 9999999999999844332 2334457999999999999999999999999988999999999999999999999999
Q ss_pred ccceee-CCeeecCCCC
Q 012774 441 KDLIKY-KGYQVLPLLN 456 (456)
Q Consensus 441 ~d~ik~-~G~~v~p~e~ 456 (456)
||+||+ +|++|+|.||
T Consensus 510 kd~ik~~~G~~V~p~eI 526 (651)
T PLN02736 510 KNIFKLAQGEYIAPEKI 526 (651)
T ss_pred hhheEcCCCcEechHHH
Confidence 999997 6999999875
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-64 Score=514.41 Aligned_cols=408 Identities=23% Similarity=0.311 Sum_probs=327.5
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEEC-----C--CCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINS-----V--TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI 110 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~-----~--~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~ 110 (456)
.|+.+++.+.++++ |+++|+... . ..+++||+||.++++++|++|.+ +|+++||+|+|+++|+++|++
T Consensus 43 ~t~~~~l~~~~~~~----p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~-~Gv~~gd~Vai~~~n~~e~~~ 117 (660)
T PLN02861 43 DSPWQFFSDAVKKY----PNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRS-RGVNPGDRCGIYGSNCPEWII 117 (660)
T ss_pred CCHHHHHHHHHHhC----CCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHH
Confidence 58999999999999 999999641 1 12579999999999999999998 899999999999999999999
Q ss_pred HHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhc----c--CCe-EEEEcCC--------------
Q 012774 111 LYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----L--KHR-TILIDSP-------------- 169 (456)
Q Consensus 111 ~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~----~--~~~-~~~~~~~-------------- 169 (456)
+++||+++|++++|+++.++.+++.+++++++++++|++++....+.. . ..+ ++.++..
T Consensus 118 ~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 197 (660)
T PLN02861 118 AMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVS 197 (660)
T ss_pred HHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcE
Confidence 999999999999999999999999999999999999998766554422 1 122 3333321
Q ss_pred --chhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCC----CCCCCcEEEEecch
Q 012774 170 --EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP----KRVSPAVMLFTMPY 243 (456)
Q Consensus 170 --~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~----~~~~~~~~~~~~p~ 243 (456)
+++++...... ........++++++++|||||||.||||++||++++..+......+. ....+|++++.+|+
T Consensus 198 ~~~~~~~~~~~~~--~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl 275 (660)
T PLN02861 198 CFSWEEFSLMGSL--DCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPL 275 (660)
T ss_pred EEEHHHHHHhCcc--cCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcH
Confidence 12222221110 11122345789999999999999999999999999987766544331 14678999999999
Q ss_pred hhHhhHHHHHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCC------------------------
Q 012774 244 FHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG------------------------ 299 (456)
Q Consensus 244 ~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------------------------ 299 (456)
+|++++...+.++..|+++++.. +++..+++.|+++++|+++++|.++..+....
T Consensus 276 ~H~~~~~~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~ 354 (660)
T PLN02861 276 AHVYDQVIETYCISKGASIGFWQ-GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLG 354 (660)
T ss_pred HHHHHHHHHHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 99999866667899999988874 58999999999999999999999999886410
Q ss_pred ------CC---CC-C----------CC-CCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccCCCCC
Q 012774 300 ------ST---DG-Y----------DL-SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDEC 358 (456)
Q Consensus 300 ------~~---~~-~----------~l-~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~ 358 (456)
.. .. . .+ .++|.+++||+++++++. +|.+.++...+++.||+||+++.++.... ...
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~-~~~~~~~~~~l~~~YG~TE~~~~~~~~~~-~~~ 432 (660)
T PLN02861 355 NLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVE-EFLRVTSCSVLSQGYGLTESCGGCFTSIA-NVF 432 (660)
T ss_pred HHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHH-HHHHHHcCCCeeEecchhhhhhceeeccc-ccC
Confidence 00 00 0 11 579999999999999975 46666644579999999999765543222 222
Q ss_pred CCCCccccccCCcEEEEEcC-CCC-CCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEE
Q 012774 359 RRWGSTGRLSAGLEAKIVDP-ETG-DSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFI 436 (456)
Q Consensus 359 ~~~~~~G~~~~~~~~~i~d~-~~~-~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~ 436 (456)
...+++|+|+|+++++|+|. +.| ..++++..|||+++|++++.|||++|+.|.+.| .+|||+|||+|++|+||+|+|
T Consensus 433 ~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f-~dGw~~TGDlg~~d~dG~l~i 511 (660)
T PLN02861 433 SMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVL-IDGWFHTGDIGEWQPNGAMKI 511 (660)
T ss_pred CCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhh-hccCcccCceEEECCCCcEEE
Confidence 34689999999999999983 333 344566789999999999999999999999999 589999999999999999999
Q ss_pred ecccccceee-CCeeecCCCC
Q 012774 437 VDRLKDLIKY-KGYQVLPLLN 456 (456)
Q Consensus 437 ~GR~~d~ik~-~G~~v~p~e~ 456 (456)
.||+||+||+ +|++|+|.||
T Consensus 512 ~GR~kd~Ik~~~G~~I~p~eI 532 (660)
T PLN02861 512 IDRKKNIFKLSQGEYVAVENL 532 (660)
T ss_pred EeccccceEcCCCeEEcHHHH
Confidence 9999999997 6999999874
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-63 Score=502.24 Aligned_cols=408 Identities=22% Similarity=0.254 Sum_probs=341.1
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.++.+.+.+.++++ |+++|+.+.. ..++||+||.++++++|+.|.+ .+||+|+++++|++++++++|||++
T Consensus 19 ~~~~~~~~~~~~~~----p~~~a~~~~~-~~~~Ty~el~~~~~~lA~~L~~----~~gd~Val~~~n~~e~~~~~lA~~~ 89 (539)
T PRK06334 19 KTVLESFLKLCSEM----TTATVCWDEQ-LGKLSYNQVRKAVIALATKVSK----YPDQHIGIMMPASAGAYIAYFATLL 89 (539)
T ss_pred CcHHHHHHHHHHhC----CCceEEEeCC-CCcccHHHHHHHHHHHHHHHhh----ccCCeEEEEcCCchHHHHHHHHHHh
Confidence 58999999999999 9999998752 3689999999999999999987 3899999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-------CCeEEEEcCCc----hhhhhccc---CCCc-
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-------KHRTILIDSPE----FDSMTMSW---NSKH- 182 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-------~~~~~~~~~~~----~~~~~~~~---~~~~- 182 (456)
+|++++|+++..+.+++.++++.+++++++++++....+.+. ...++.++... +....... ....
T Consensus 90 ~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (539)
T PRK06334 90 SGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKELSFWEKCRIGIYMSIPFE 169 (539)
T ss_pred cCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhhccHHHhhhhhhhhcCCch
Confidence 999999999999999999999999999999998776655432 11233332110 00100000 0000
Q ss_pred ----cccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhH-HHHHHHhH
Q 012774 183 ----ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAA 257 (456)
Q Consensus 183 ----~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~ 257 (456)
........++++++++|||||||.||+|+++|+++..+.......+ ....+|++++.+|++|.+++ ..++.++.
T Consensus 170 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~ 248 (539)
T PRK06334 170 WLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFF-SPKEDDVMMSFLPPFHAYGFNSCTLFPLL 248 (539)
T ss_pred hhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-CCCCCceEEEecchHhhhhhHHHHHHHHH
Confidence 0011234678999999999999999999999999988877666655 57789999999999999998 45778899
Q ss_pred hcceEEEec-CCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCce
Q 012774 258 LMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVL 336 (456)
Q Consensus 258 ~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i 336 (456)
.|+++++.. .+++..+++.|+++++|++.++|+++..|++........++++|.+++||+++++++.+++++.+++..+
T Consensus 249 ~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i 328 (539)
T PRK06334 249 SGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQL 328 (539)
T ss_pred cCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccccccccEEEECCccCCHHHHHHHHHHCCCCeE
Confidence 999998875 5799999999999999999999999999988765555678999999999999999999999999988999
Q ss_pred EeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCcccccccc-C
Q 012774 337 VQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL-L 415 (456)
Q Consensus 337 ~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~-~ 415 (456)
++.||+||++.+++.... ......+++|+|+++++++|+|++++.++++|+.|||+|+|+.++.||+++++.+.... .
T Consensus 329 ~~~YG~TE~~~~~~~~~~-~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~ 407 (539)
T PRK06334 329 RQGYGTTECSPVITINTV-NSPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELG 407 (539)
T ss_pred EecccccccCceEEeccC-CCCCCCCcCceecCCCEEEEEcCCCCccCCCCceEEEEEecCcccccccCCcccccceeeC
Confidence 999999999876654322 22233467999999999999997778999999999999999999999999988654322 3
Q ss_pred CCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 416 PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 416 ~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
.+|||+|||+|++|++|+++|.||.||+||++|++|+|.||
T Consensus 408 ~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eI 448 (539)
T PRK06334 408 GETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEAL 448 (539)
T ss_pred CceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHH
Confidence 46899999999999999999999999999999999999875
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-63 Score=485.87 Aligned_cols=397 Identities=31% Similarity=0.430 Sum_probs=324.9
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECC--CCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSV--TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL 115 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~--~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~ 115 (456)
.++..++.++++.+ |+.+|+.... ..+.+||+|+.+++.++|++|++ +|+..||+|+|++.|+++|+++.+||
T Consensus 16 ~~~~~~~~~~~~~~----~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~-lg~~~gdrvai~a~nr~eW~i~d~a~ 90 (613)
T COG1022 16 HTLPKRLAERVKDR----PDGVALMYKELGGWEAITYRELYERVRALASGLLS-LGIPAGDRVAIFAANRPEWAIADLAI 90 (613)
T ss_pred ccHHHHHHHHhhcC----CcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 58899999999999 8888987653 24789999999999999999999 99977999999999999999999999
Q ss_pred HHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchH-HHHhccCC--e-E---E-EEc---------CCchhhhhccc
Q 012774 116 LSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV-HKLAKLKH--R-T---I-LID---------SPEFDSMTMSW 178 (456)
Q Consensus 116 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-~~~~~~~~--~-~---~-~~~---------~~~~~~~~~~~ 178 (456)
+.+|++.||+.+..++++++++|++++++++|++.... +.+..... . + . ..+ ...++......
T Consensus 91 ~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (613)
T COG1022 91 LALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEG 170 (613)
T ss_pred HHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhcccccccccc
Confidence 99999999999999999999999999999999987443 33331111 0 0 0 000 00011100000
Q ss_pred CC-------CccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHH
Q 012774 179 NS-------KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFF 251 (456)
Q Consensus 179 ~~-------~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~ 251 (456)
.. .......+..++|+|.++|||||||.||||++||+|+++++....+..+...++|++++.+|+.|++...+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~Er~~ 250 (613)
T COG1022 171 ISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAF 250 (613)
T ss_pred chhhhhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHHHHH
Confidence 00 00111235678999999999999999999999999999999999998832789999999999999999865
Q ss_pred HHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCC----C-------------------------
Q 012774 252 CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST----D------------------------- 302 (456)
Q Consensus 252 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----~------------------------- 302 (456)
. ..+..++........++..+++.+++.+||.++++|.+|+.+-+.... .
T Consensus 251 ~-~~~~~~~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~ 329 (613)
T COG1022 251 E-GGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLG 329 (613)
T ss_pred H-HHHHhhcceEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcc
Confidence 3 333333334444445799999999999999999999999866432110 0
Q ss_pred -C----------------C-CC-CCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccCCCCCCCCCc
Q 012774 303 -G----------------Y-DL-SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGS 363 (456)
Q Consensus 303 -~----------------~-~l-~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~ 363 (456)
. . .+ .++|++++||+++++++...++.. ++++.++||+||+++.++.. ++.....++
T Consensus 330 ~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l--Gi~i~eGYGlTEts~~~~v~--~~~~~~~gt 405 (613)
T COG1022 330 GGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL--GIPILEGYGLTETSAVVSVN--PPDRFVLGT 405 (613)
T ss_pred cCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc--CCCeEEEecccccccceEEc--cccCcccCC
Confidence 0 0 11 378999999999999999999998 89999999999999888773 455567899
Q ss_pred cccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccc
Q 012774 364 TGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDL 443 (456)
Q Consensus 364 ~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ 443 (456)
+|+|+|+++++|+| .|||+|+||.+++|||++|+.|.+.|++||||+|||+|.+|++|+|++.||++|+
T Consensus 406 vG~p~p~~evKI~d-----------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~i~gRkK~~ 474 (613)
T COG1022 406 VGKPLPGIEVKIAD-----------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKEL 474 (613)
T ss_pred cCCcCCCceEEEcc-----------CceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCcEEEeecccce
Confidence 99999999999998 3999999999999999999999999999999999999999999999999999999
Q ss_pred eee-CCeeecCCC
Q 012774 444 IKY-KGYQVLPLL 455 (456)
Q Consensus 444 ik~-~G~~v~p~e 455 (456)
||. +|++|.|..
T Consensus 475 i~l~~GknIaP~~ 487 (613)
T COG1022 475 IKLSNGKNIAPEP 487 (613)
T ss_pred EECCCCcccChHH
Confidence 998 599999964
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-62 Score=490.53 Aligned_cols=425 Identities=38% Similarity=0.592 Sum_probs=359.7
Q ss_pred eeeCCCCCCCCCCCCCCCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEE
Q 012774 21 TFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFV 100 (456)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l 100 (456)
.|++.++....|. .+|+.+++.++++++ |+++|+++...++++||.||.++++++|+.|.+ .|+++||+|++
T Consensus 9 ~~~~~~~~~~~~~---~~~~~~~l~~~~~~~----~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~-~g~~~gd~V~i 80 (537)
T PLN02246 9 IFRSKLPDIYIPN---HLPLHDYCFERLSEF----SDRPCLIDGATGRVYTYADVELLSRRVAAGLHK-LGIRQGDVVML 80 (537)
T ss_pred EecCCCCCCCCCC---CCcHHHHHHHHHHhC----CCCeEEEecCCCceeeHHHHHHHHHHHHHHHHH-hCCCCCCEEEE
Confidence 3445555444433 379999999999998 999999986556899999999999999999998 89999999999
Q ss_pred EcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc----CCeEEEEcCCc-----h
Q 012774 101 LSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHRTILIDSPE-----F 171 (456)
Q Consensus 101 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~~-----~ 171 (456)
+++|+++++++++||+++|++++|+++..+.+++..+++.++++++|+++.....+... ...++.++... +
T Consensus 81 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 160 (537)
T PLN02246 81 LLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDDPPEGCLHF 160 (537)
T ss_pred ECCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhcCCceEEEeCCCCCCceeH
Confidence 99999999999999999999999999999999999999999999999998776655432 23444444221 2
Q ss_pred hhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhcc----CCCCCCCCcEEEEecchhhHh
Q 012774 172 DSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA----SSPKRVSPAVMLFTMPYFHIY 247 (456)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~----~~~~~~~~~~~~~~~p~~~~~ 247 (456)
.++..... .........++++++++|||||||.||+|+++|+++......... .+ .+..+|++++.+|++|.+
T Consensus 161 ~~~~~~~~--~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~-~~~~~d~~l~~~pl~~~~ 237 (537)
T PLN02246 161 SELTQADE--NELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNL-YFHSDDVILCVLPMFHIY 237 (537)
T ss_pred HHHhcCCC--CCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhcccccc-CCCCCcEEEEeechHHHH
Confidence 22221111 111223346789999999999999999999999999887765433 23 568899999999999999
Q ss_pred hH-HHHHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHH
Q 012774 248 GL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMA 326 (456)
Q Consensus 248 g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~ 326 (456)
++ ..++.++..|+++++.+.+++..+++.|+++++|++.++|+++..|.+........++++|.+++||+++++++.+.
T Consensus 238 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~ 317 (537)
T PLN02246 238 SLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDA 317 (537)
T ss_pred HHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCccceeEEEEecCcCCHHHHHH
Confidence 98 55678899999999999999999999999999999999999999998876655567889999999999999999999
Q ss_pred HHHhCCCCceEeccCccccccccccccC---CCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCccccc
Q 012774 327 FASKFPKVVLVQAYGLTESTAGVFRTVG---PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGY 403 (456)
Q Consensus 327 ~~~~~~~~~i~~~yG~tE~~~~~~~~~~---~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy 403 (456)
+++.+++..+.+.||+||++.+++.+.. .......+++|+|+++++++|+|++++++++.|+.|||+++|+.++.||
T Consensus 318 ~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY 397 (537)
T PLN02246 318 FRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGY 397 (537)
T ss_pred HHHHcCCCeEeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCceEEEEECCchhccc
Confidence 9999988999999999999876543211 1112345789999999999999977899999999999999999999999
Q ss_pred CCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 404 VGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 404 ~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+++++.+...+..++||+|||+|+++++|++++.||.||+||++|++|+|.||
T Consensus 398 ~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eI 450 (537)
T PLN02246 398 LNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAEL 450 (537)
T ss_pred cCCchhhhhcccCCCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHH
Confidence 99999999988788999999999999999999999999999999999999774
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-62 Score=497.70 Aligned_cols=406 Identities=25% Similarity=0.326 Sum_probs=338.0
Q ss_pred CCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
+.|+.++|.+.++++ |+++|+++. ++++||+||.++++++|+.|.+ .|+++||+|+++++|+++++++++||+
T Consensus 6 ~~~~~~~~~~~~~~~----p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~-~Gv~~gd~V~v~~~n~~~~~~~~la~~ 78 (563)
T PLN02860 6 QAHICQCLTRLATLR----GNAVVTISG--NRRRTGHEFVDGVLSLAAGLLR-LGLRNGDVVAIAALNSDLYLEWLLAVA 78 (563)
T ss_pred hhHHHHHHHHHHHhc----CCceEEecC--CceeeHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCCHHHHHHHHHHh
Confidence 379999999999999 999999986 7899999999999999999999 899999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHH---HHh--ccC-Ce-EEEEcCCc------hhhhhcccCC---
Q 012774 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH---KLA--KLK-HR-TILIDSPE------FDSMTMSWNS--- 180 (456)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---~~~--~~~-~~-~~~~~~~~------~~~~~~~~~~--- 180 (456)
++|++++|+++.++.+++.+++++++++++++++.... .+. ... .. .+..+... +..+......
T Consensus 79 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (563)
T PLN02860 79 CAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTTEMLKQR 158 (563)
T ss_pred hccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccccchhhccccchhccC
Confidence 99999999999999999999999999999999875422 221 111 11 12222111 1111110000
Q ss_pred --CccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHh
Q 012774 181 --KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAAL 258 (456)
Q Consensus 181 --~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~ 258 (456)
..........++++++++|||||||.||+|+++|+++..+.......+ ...++|+++..+|++|.+++...+.++..
T Consensus 159 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~g~~~~~~~l~~ 237 (563)
T PLN02860 159 ALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIV-GYGEDDVYLHTAPLCHIGGLSSALAMLMV 237 (563)
T ss_pred ccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhc-CCCCCCEEEEecCchhhccHHHHHHHHHc
Confidence 000111234568999999999999999999999999987766655555 67788999999999999999888899999
Q ss_pred cceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCC--CCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCce
Q 012774 259 METAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVL 336 (456)
Q Consensus 259 G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i 336 (456)
|+++++.+.+++..+++.|+++++|+++++|+++..|++.... ....++++|.+++||+++++++.+.|++.|++.++
T Consensus 238 G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~ 317 (563)
T PLN02860 238 GACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKL 317 (563)
T ss_pred CceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhcCCCce
Confidence 9999999999999999999999999999999999999875432 22457899999999999999999999999988999
Q ss_pred EeccCccccccccccccCCC---------------------CCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEe
Q 012774 337 VQAYGLTESTAGVFRTVGPD---------------------ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR 395 (456)
Q Consensus 337 ~~~yG~tE~~~~~~~~~~~~---------------------~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~ 395 (456)
++.||+||++..+....... ......++|+|+++++++|++++ +|+.|||+++
T Consensus 318 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~------~g~~Gel~v~ 391 (563)
T PLN02860 318 FSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE------SSRVGRILTR 391 (563)
T ss_pred ecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCC------CCceeEEEEe
Confidence 99999999976544321111 01112368999999999999843 5789999999
Q ss_pred cCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 396 GPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 396 g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|+.++.||+++++.+.+.+..+|||+|||+|++|+||+++|.||.||+||++|++|+|.||
T Consensus 392 g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eI 452 (563)
T PLN02860 392 GPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEV 452 (563)
T ss_pred cCcccccccCCccccchhccCCCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHH
Confidence 9999999999999999988889999999999999999999999999999999999999874
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-62 Score=472.78 Aligned_cols=412 Identities=25% Similarity=0.373 Sum_probs=344.2
Q ss_pred CCCCCHHHHhhhcccCCCCCCCCCcEEEECC------CCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcH
Q 012774 35 DAPISAVDYVSSLRATLPWRDDDTVALINSV------TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI 108 (456)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~p~~~A~~~~~------~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~ 108 (456)
+...|+++.+.+.+..+ ++.+++-.-. ..+.+||.|..+++.+++..|++ +|+++++.|+|+..|++||
T Consensus 72 ~~~~T~~~~f~~~~~~~----~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~-lG~~~~~~VGIy~~N~pEW 146 (691)
T KOG1256|consen 72 DGPLTLYEGFRRSVEKS----GNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRK-LGVKEDSKVGIYAFNRPEW 146 (691)
T ss_pred CCcccHHHHhhcchhcc----CCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHH-hCCCCCceEEEeccCChhh
Confidence 56789999999999999 9999985432 24789999999999999999997 9999999999999999999
Q ss_pred HHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEc-cchHHHHhcc-------CCe-EEEEcCC----------
Q 012774 109 PILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFAT-SSVVHKLAKL-------KHR-TILIDSP---------- 169 (456)
Q Consensus 109 ~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~-~~~~~~~~~~-------~~~-~~~~~~~---------- 169 (456)
+++.+||...|.+.|||...++++.+.++++++++.+++++ ++....+.+. .++ ++.++..
T Consensus 147 iis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~ 226 (691)
T KOG1256|consen 147 IISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAEN 226 (691)
T ss_pred HHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEEecCCchhhhhhhhc
Confidence 99999999999999999999999999999999999999999 5555554421 122 2333322
Q ss_pred ------chhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHH---hccCCC--CCCCCcEEE
Q 012774 170 ------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS---SFASSP--KRVSPAVML 238 (456)
Q Consensus 170 ------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~---~~~~~~--~~~~~~~~~ 238 (456)
+|+++.+.+............+++.|.|.|||||||.||||++||+|+++.+.. ...... .....|+++
T Consensus 227 ~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~l 306 (691)
T KOG1256|consen 227 NGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYL 306 (691)
T ss_pred CCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEE
Confidence 266666655432222224678899999999999999999999999999986543 222221 234479999
Q ss_pred EecchhhHhhHHHHHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCC----CC------------
Q 012774 239 FTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS----TD------------ 302 (456)
Q Consensus 239 ~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----~~------------ 302 (456)
+++|+.|++........+..|+.+.+.++ |+..+.+.|++.+||.+.++|.+++++-+... ..
T Consensus 307 SyLPLAHi~er~~~~~~~~~G~~IgF~~g-D~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~ 385 (691)
T KOG1256|consen 307 SYLPLAHIFERVVELYTFYIGAKIGFARG-DILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAM 385 (691)
T ss_pred EeCcHHHHHHHHHHHhHhhcccEEEEecC-ChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999999777777799999999985 88999999999999999999999987644211 00
Q ss_pred ----------CCC-----C--------------CCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCcccccccccccc
Q 012774 303 ----------GYD-----L--------------SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353 (456)
Q Consensus 303 ----------~~~-----l--------------~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~ 353 (456)
+.. + .++|.+++|++|+++++...++..+ +++|.++||+|||++.++...
T Consensus 386 ~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~-g~~v~eGYGlTEts~g~~~~~ 464 (691)
T KOG1256|consen 386 AYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAAL-GCRVLEGYGLTETSAGTTLTL 464 (691)
T ss_pred HHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhc-CceeeecccccccCCceEecc
Confidence 000 0 4689999999999999999999998 899999999999985555432
Q ss_pred CCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCCc
Q 012774 354 GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGF 433 (456)
Q Consensus 354 ~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~ 433 (456)
. .+. ..+++|.|+|+++++++|+++...-..|..|||||+|+.+++|||++|+.|++.++.|||++|||+|+|+++|.
T Consensus 465 ~-~d~-~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTGDiG~~~p~G~ 542 (691)
T KOG1256|consen 465 P-GDN-VLGSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTGDIGEWDPNGT 542 (691)
T ss_pred C-CCC-CCCCcCCcccCceEEEechHHhCcCcCCCcceEEEecchhceeccCChHHHhhhhccccccccccceeECCCcc
Confidence 2 222 67999999999999999988777777788999999999999999999999999999999999999999999999
Q ss_pred EEEecccccceeeC-CeeecCCC
Q 012774 434 LFIVDRLKDLIKYK-GYQVLPLL 455 (456)
Q Consensus 434 l~~~GR~~d~ik~~-G~~v~p~e 455 (456)
|.|+||++++||.. |+.|.|..
T Consensus 543 l~IidRkK~ifklaqGEyVaPe~ 565 (691)
T KOG1256|consen 543 LKIIDRKKNIFKLAQGEYVAPEK 565 (691)
T ss_pred EEEEecccceEEcCCCCccChHH
Confidence 99999999999996 99999954
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-62 Score=494.39 Aligned_cols=399 Identities=24% Similarity=0.305 Sum_probs=342.1
Q ss_pred CHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHh
Q 012774 39 SAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSL 118 (456)
Q Consensus 39 ~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~~ 118 (456)
++.+++.+.++++ |+++|+++. ++++||+||.++++++|+.|.+ .|+++||+|+++++|+++++++++||+++
T Consensus 50 ~~~~~~~~~a~~~----pd~~Al~~~--~~~~Ty~el~~~~~~la~~L~~-~gi~~gd~V~i~~~n~~~~~~~~la~~~~ 122 (549)
T PRK07788 50 PFAGLVAHAARRA----PDRAALIDE--RGTLTYAELDEQSNALARGLLA-LGVRAGDGVAVLARNHRGFVLALYAAGKV 122 (549)
T ss_pred hHHHHHHHHHHHC----CCceEEEEC--CCceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHhc
Confidence 8899999999999 999999987 7899999999999999999998 89999999999999999999999999999
Q ss_pred CCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-----CCeEEEEcC----------CchhhhhcccCCCcc
Q 012774 119 GVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KHRTILIDS----------PEFDSMTMSWNSKHE 183 (456)
Q Consensus 119 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~~~----------~~~~~~~~~~~~~~~ 183 (456)
|++++|+++.++.+++.++++.++++++|++++....+... ....+.... ..++++.....
T Consensus 123 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 198 (549)
T PRK07788 123 GARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGSTDETLDDLIAGSS---- 198 (549)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCccccCCcCcccHHHHhcCCC----
Confidence 99999999999999999999999999999998876665432 112221111 12223222111
Q ss_pred ccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEE
Q 012774 184 LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAV 263 (456)
Q Consensus 184 ~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~ 263 (456)
........++.++++|||||||.||+|.++|+++...+......+ ....+++++...|++|.+++...+.++..|++++
T Consensus 199 ~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v 277 (549)
T PRK07788 199 TAPLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRV-PFRAGETTLLPAPMFHATGWAHLTLAMALGSTVV 277 (549)
T ss_pred CCCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhC-CCCcCCeEEEccchHHHHHHHHHHHHHHhCCEEE
Confidence 111223456789999999999999999999999998877776666 5778899999999999999977888999999999
Q ss_pred EecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCC--CCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccC
Q 012774 264 VMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYG 341 (456)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG 341 (456)
+...+++..+++.++++++|++.++|+++..+++.... ...+++++|.+++||+++++++.+++++.+ +..+++.||
T Consensus 278 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG 356 (549)
T PRK07788 278 LRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAF-GPVLYNLYG 356 (549)
T ss_pred ECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHh-CccceeccC
Confidence 99889999999999999999999999999999987654 455688999999999999999999999988 778999999
Q ss_pred ccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeee
Q 012774 342 LTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMR 421 (456)
Q Consensus 342 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~ 421 (456)
+||++....... .+.....+++|+|+++++++|+| +++++++.|+.|||+++|+.++.||++++.. . . .+|||+
T Consensus 357 ~TE~~~~~~~~~-~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~--~-~-~~g~~~ 430 (549)
T PRK07788 357 STEVAFATIATP-EDLAEAPGTVGRPPKGVTVKILD-ENGNEVPRGVVGRIFVGNGFPFEGYTDGRDK--Q-I-IDGLLS 430 (549)
T ss_pred cchhchhhccCh-hhhhhcCCCcccCCCCcEEEEEC-CCcCCCCCCCeEEEEEeCCCccccccCCCcc--c-c-cCCcee
Confidence 999986544322 12223457899999999999999 7789999999999999999999999998765 2 2 479999
Q ss_pred ccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 422 TGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 422 TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|||+|++|+||+++|.||.||+||++|++|+|.|+
T Consensus 431 TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eI 465 (549)
T PRK07788 431 SGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEV 465 (549)
T ss_pred cCceEEEcCCCCEEEeccCcceEEECCEEECHHHH
Confidence 99999999999999999999999999999999874
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-62 Score=498.77 Aligned_cols=413 Identities=21% Similarity=0.267 Sum_probs=329.9
Q ss_pred CCCCCHHHHhhhccc-C--CCCCCCCCcEEEECCC----CceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCc
Q 012774 35 DAPISAVDYVSSLRA-T--LPWRDDDTVALINSVT----GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIE 107 (456)
Q Consensus 35 ~~~~~~~~~l~~~~~-~--~~~~~p~~~A~~~~~~----~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~ 107 (456)
.+.+|....+.++.. . + |+++|+++..+ .+++||+||.++++++|+.|++ +|+++||+|+++++|+++
T Consensus 55 ~~~~n~~~~~l~~~~~~~~~----~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~GDrV~i~~~n~~e 129 (647)
T PTZ00237 55 GGELNTCYNVLDIHVKNPLK----RDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLN-LNISKNDNVLIYMANTLE 129 (647)
T ss_pred CCeeeHHHHHHHHhhcccCC----CCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHH
Confidence 666787776665543 2 5 89999987421 3689999999999999999998 899999999999999999
Q ss_pred HHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccc---------hHHHHh---cc---C-CeEEEEcC---
Q 012774 108 IPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSS---------VVHKLA---KL---K-HRTILIDS--- 168 (456)
Q Consensus 108 ~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~---------~~~~~~---~~---~-~~~~~~~~--- 168 (456)
+++++|||+++|++++|+++.++.+++.+++++++++++|+++. ....+. .. . ..++.+..
T Consensus 130 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~ 209 (647)
T PTZ00237 130 PLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDI 209 (647)
T ss_pred HHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCc
Confidence 99999999999999999999999999999999999999999752 111111 10 1 12332210
Q ss_pred ------------------CchhhhhcccC---CCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHH-HHHHHHHhcc
Q 012774 169 ------------------PEFDSMTMSWN---SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRN-LTAAVASSFA 226 (456)
Q Consensus 169 ------------------~~~~~~~~~~~---~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~-l~~~~~~~~~ 226 (456)
..|+++..... ...........++++++++|||||||.||+|+++|.+ +.........
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~ 289 (647)
T PTZ00237 210 TSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRS 289 (647)
T ss_pred ccccccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHH
Confidence 01222211100 0000112335678999999999999999999999998 4433322222
Q ss_pred CCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecC--CC----HHHHHHHHHHhcceeEEecHHHHHHHhcCCC
Q 012774 227 SSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR--FD----LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS 300 (456)
Q Consensus 227 ~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~--~~----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 300 (456)
.. ....++++++..|+.|+.+...++.++..|+++++.+. +. +..+++.|+++++|+++++|++++.|++...
T Consensus 290 ~~-~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 368 (647)
T PTZ00237 290 II-EKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDP 368 (647)
T ss_pred hc-CCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCc
Confidence 33 45678999999999998766678899999999998764 12 6889999999999999999999999987532
Q ss_pred -----CCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEE
Q 012774 301 -----TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKI 375 (456)
Q Consensus 301 -----~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i 375 (456)
....+++++|.+++||+++++++.+++++.+ ++++++.||+||++++...... ......+++|+|+|+++++|
T Consensus 369 ~~~~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~-g~~i~~~yG~TE~~~~~~~~~~-~~~~~~~s~G~p~~g~~~~i 446 (647)
T PTZ00237 369 EATIIRSKYDLSNLKEIWCGGEVIEESIPEYIENKL-KIKSSRGYGQTEIGITYLYCYG-HINIPYNATGVPSIFIKPSI 446 (647)
T ss_pred cccccccccCcchheEEEecCccCCHHHHHHHHHhc-CCCEEeeechHHhChhhhccCC-CCCCCCCCCccCcCCceEEE
Confidence 2345689999999999999999999999988 7999999999999866543222 22233478999999999999
Q ss_pred EcCCCCCCCCCCCcceEEEecC---CcccccCCCccccccccCC-CCeeeccceEEEccCCcEEEecccccceeeCCeee
Q 012774 376 VDPETGDSLPPGKEGELSIRGP---TIMKGYVGEPEVTSATLLP-DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQV 451 (456)
Q Consensus 376 ~d~~~~~~~~~g~~Gel~i~g~---~~~~gy~~~~~~~~~~~~~-~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v 451 (456)
+| ++|++++.|+.|||++++| +++.|||++++.+.+.|.. +|||+|||+|++|+||+++|+||.||+||++|+||
T Consensus 447 ~d-~~g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI 525 (647)
T PTZ00237 447 LS-EDGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKV 525 (647)
T ss_pred EC-CCCCCCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEECCEEe
Confidence 99 6899999999999999986 7899999999998877754 78999999999999999999999999999999999
Q ss_pred cCCCC
Q 012774 452 LPLLN 456 (456)
Q Consensus 452 ~p~e~ 456 (456)
+|.||
T Consensus 526 ~p~eI 530 (647)
T PTZ00237 526 QLNTI 530 (647)
T ss_pred CHHHH
Confidence 99875
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-62 Score=499.42 Aligned_cols=413 Identities=18% Similarity=0.243 Sum_probs=333.2
Q ss_pred CCCCCHHHHhhh-ccc-CCCCCCCCCcEEEECC----CCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcH
Q 012774 35 DAPISAVDYVSS-LRA-TLPWRDDDTVALINSV----TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI 108 (456)
Q Consensus 35 ~~~~~~~~~l~~-~~~-~~~~~~p~~~A~~~~~----~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~ 108 (456)
++.+|+...+.+ .+. .+ |+++|+++.. ..+++||+||.++++++|+.|++ +|+++||+|+++++|++++
T Consensus 84 g~~~N~~~~~l~~~~~~~~----~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~GdrV~i~~pn~~e~ 158 (666)
T PLN02654 84 GGKTNICYNCLDRNVEAGN----GDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKD-VGVKKGDAVVIYLPMLMEL 158 (666)
T ss_pred CCEeeHHHHHHHHhhccCC----CCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHH
Confidence 566888665554 443 36 9999998732 23689999999999999999998 9999999999999999999
Q ss_pred HHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHH---------H----hc-----cCCe-EEEEcCC
Q 012774 109 PILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHK---------L----AK-----LKHR-TILIDSP 169 (456)
Q Consensus 109 ~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~---------~----~~-----~~~~-~~~~~~~ 169 (456)
++++|||+++|++++|+++.++.+++..++++++++++|+++..... + .. .... ++..+..
T Consensus 159 v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (666)
T PLN02654 159 PIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQ 238 (666)
T ss_pred HHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEeccc
Confidence 99999999999999999999999999999999999999998754211 1 10 0111 1111110
Q ss_pred ----------------chhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHH-HhccCCCCCC
Q 012774 170 ----------------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVA-SSFASSPKRV 232 (456)
Q Consensus 170 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~-~~~~~~~~~~ 232 (456)
.|+++.... ...........+++++++|||||||.||||+++|++++.... .....+ ...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~-~~~ 315 (666)
T PLN02654 239 LAMKREDTKWQEGRDVWWQDVVPNY--PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAF-DYK 315 (666)
T ss_pred ccccccccccccCCcccHHHHhhcC--CCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhc-CCC
Confidence 011111100 000111224678999999999999999999999999865433 333344 678
Q ss_pred CCcEEEEecchhhHhhH-HHHHHHhHhcceEEEecC----CCHHHHHHHHHHhcceeEEecHHHHHHHhcCCC--CCCCC
Q 012774 233 SPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYD 305 (456)
Q Consensus 233 ~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~ 305 (456)
++|++++..|+.|+.+. ..++.++..|+++++.+. +++..+++.|+++++|+++++|++++.|++... ....+
T Consensus 316 ~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~ 395 (666)
T PLN02654 316 PTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHS 395 (666)
T ss_pred CCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCC
Confidence 89999999999999987 557789999999999863 589999999999999999999999999988653 23456
Q ss_pred CCCceEEEecCCCCCHHHHHHHHHhCCC--CceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCC
Q 012774 306 LSSLETVACGAAPLGKDTIMAFASKFPK--VVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDS 383 (456)
Q Consensus 306 l~~lr~v~~gG~~~~~~~~~~~~~~~~~--~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~ 383 (456)
++++|.++++|+++++++++++.+.++. +++.+.||+||+++............+.+++|+|++|++++|+| ++|+.
T Consensus 396 l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~ 474 (666)
T PLN02654 396 RKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKE 474 (666)
T ss_pred hhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCC
Confidence 8899999999999999999999998842 78999999999987655422211234668999999999999999 77888
Q ss_pred CCCCCcceEEEec--CCcccccCCCccccccccCC--CCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 384 LPPGKEGELSIRG--PTIMKGYVGEPEVTSATLLP--DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 384 ~~~g~~Gel~i~g--~~~~~gy~~~~~~~~~~~~~--~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
++.++.|||++++ |+++.|||++++.+...+.. +|||+|||+|++|+||+++|+||.||+||++|+||+|.||
T Consensus 475 ~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EI 551 (666)
T PLN02654 475 IEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEV 551 (666)
T ss_pred CCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHH
Confidence 9888899999999 78999999999888766532 7899999999999999999999999999999999999875
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-60 Score=483.99 Aligned_cols=428 Identities=36% Similarity=0.591 Sum_probs=356.0
Q ss_pred eeeCCCCCCCCCCCCCCCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEE
Q 012774 21 TFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFV 100 (456)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l 100 (456)
.|++..+..+.+ ...|+.+.+.+.++.+ |+++|+++...++.+||+||.++++++|..|.+ .|+++||+|++
T Consensus 14 ~~~~~~~~~~~~---~~~~~~~~l~~~a~~~----p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~-~g~~~g~~V~i 85 (546)
T PLN02330 14 IFRSRYPSVPVP---DKLTLPDFVLQDAELY----ADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRS-LGLRKGQVVVV 85 (546)
T ss_pred eeccCCCCCCCC---CCCcHHHHHhhhhhcC----CCccEEEecCCCCcccHHHHHHHHHHHHHHHHH-hCCCCCCEEEE
Confidence 344444443322 2478999999999999 999999986557899999999999999999999 89999999999
Q ss_pred EcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccCCeEEEEcC------Cchhhh
Q 012774 101 LSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDS------PEFDSM 174 (456)
Q Consensus 101 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 174 (456)
+++|+++++++++||+++|++++|+++..+.+++.++++.++++++++++.....+......++.++. ..+.++
T Consensus 86 ~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 165 (546)
T PLN02330 86 VLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLGLPVIVLGEEKIEGAVNWKEL 165 (546)
T ss_pred ECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcCCcEEEecCCCCCCcccHHHH
Confidence 99999999999999999999999999999999999999999999999999888777665555555542 224444
Q ss_pred hcccCCC-ccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCC-CCCCCCcEEEEecchhhHhhH-HH
Q 012774 175 TMSWNSK-HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS-PKRVSPAVMLFTMPYFHIYGL-FF 251 (456)
Q Consensus 175 ~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~g~-~~ 251 (456)
....... ..........+++++++|||||||.||+|.++|+++..++....... ......++.+.++|++|.+++ ..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~ 245 (546)
T PLN02330 166 LEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGI 245 (546)
T ss_pred HhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHHHH
Confidence 3322111 01112234568899999999999999999999999987665432222 122345688999999999988 45
Q ss_pred HHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCC--CceEEEecCCCCCHHHHHHHHH
Q 012774 252 CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS--SLETVACGAAPLGKDTIMAFAS 329 (456)
Q Consensus 252 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~--~lr~v~~gG~~~~~~~~~~~~~ 329 (456)
++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++.......++. ++|.+++||+++++++++++++
T Consensus 246 ~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~i~~~g~~l~~~~~~~~~~ 325 (546)
T PLN02330 246 CCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEA 325 (546)
T ss_pred HHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchheeeeEEEcCCcCCHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999886544444444 4799999999999999999999
Q ss_pred hCCCCceEeccCccccccccccccCCCC---CCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCC
Q 012774 330 KFPKVVLVQAYGLTESTAGVFRTVGPDE---CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGE 406 (456)
Q Consensus 330 ~~~~~~i~~~yG~tE~~~~~~~~~~~~~---~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~ 406 (456)
.|++.++++.||+||++.+......... ....+++|.|+++++++|+|++++++++.|+.|||+++|+.++.||+++
T Consensus 326 ~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~Gel~v~g~~~~~gy~~~ 405 (546)
T PLN02330 326 KFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNN 405 (546)
T ss_pred HcCCCeEEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCCceEEEEecchhhhhhccC
Confidence 9989999999999999765543211111 1234689999999999999988899999999999999999999999999
Q ss_pred ccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 407 PEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 407 ~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
++.+.+.++.+|||+|||+|++++||++++.||.+|+||++|++|+|.|+
T Consensus 406 ~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~i 455 (546)
T PLN02330 406 KEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAEL 455 (546)
T ss_pred ccchhhhccCCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHH
Confidence 99999888889999999999999999999999999999999999999764
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-62 Score=501.31 Aligned_cols=410 Identities=25% Similarity=0.291 Sum_probs=326.5
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEEC----------CCC-----------ceecHHHHHHHHHHHHHHhHhhcCCCCCC
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINS----------VTG-----------LRVSFSEFTRRTNSLASYLQNVTRLSKND 96 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~----------~~~-----------~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd 96 (456)
.|+.+++.+.++.+ ||++|+... ..+ +.+||+||.++++++|++|.+ +|+++||
T Consensus 58 ~t~~~l~~~~~~~~----pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-lG~~~gd 132 (696)
T PLN02387 58 TTLAALFEQSCKKY----SDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVA-LGHNKEE 132 (696)
T ss_pred CCHHHHHHHHHHHC----CCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHH-hCCCCCC
Confidence 58999999999999 999999421 012 348999999999999999998 8999999
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-----CC-eEEEEcCCc
Q 012774 97 TAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KH-RTILIDSPE 170 (456)
Q Consensus 97 ~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~-~~~~~~~~~ 170 (456)
+|+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++++....+... .. .++.++...
T Consensus 133 ~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~~l~~ii~~~~~~ 212 (696)
T PLN02387 133 RVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEG 212 (696)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccCCceEEEEECCCC
Confidence 999999999999999999999999999999999999999999999999999998776655422 12 244444211
Q ss_pred -----------------hhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCC
Q 012774 171 -----------------FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVS 233 (456)
Q Consensus 171 -----------------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~ 233 (456)
+.++....... ........++++++++|||||||.||||++||+++..++...........+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~ 291 (696)
T PLN02387 213 VDSDSSLSGSSNWTVSSFSEVEKLGKEN-PVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGK 291 (696)
T ss_pred chhhhhhhccCCcEEEEHHHHHHhhccC-CCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCC
Confidence 22221111110 111223467999999999999999999999999999888776554435678
Q ss_pred CcEEEEecchhhHhhHHHHHHHhHhcceEEEecCCC--------HHHHHHHHHHhcceeEEecHHHHHHHhcCCCCC---
Q 012774 234 PAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFD--------LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD--- 302 (456)
Q Consensus 234 ~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~--------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--- 302 (456)
+|++++.+|++|++++...+..+..|+++.+..... +..++..++++++|++.++|.++..+.+.....
T Consensus 292 ~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~ 371 (696)
T PLN02387 292 NDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDA 371 (696)
T ss_pred CCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhc
Confidence 899999999999999876666677787776643211 234567899999999999999999886431100
Q ss_pred ----------------------------C--C-------------CC-CCceEEEecCCCCCHHHHHHHHHhCCCCceEe
Q 012774 303 ----------------------------G--Y-------------DL-SSLETVACGAAPLGKDTIMAFASKFPKVVLVQ 338 (456)
Q Consensus 303 ----------------------------~--~-------------~l-~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~ 338 (456)
. . .+ +++|.+++||+++++++.+.++..+ ++++++
T Consensus 372 ~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~-g~~v~~ 450 (696)
T PLN02387 372 KGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICL-GAPIGQ 450 (696)
T ss_pred ccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHc-CCCeeE
Confidence 0 0 01 5899999999999999988888777 899999
Q ss_pred ccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCC-CCC--CCCCcceEEEecCCcccccCCCccccccccC
Q 012774 339 AYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETG-DSL--PPGKEGELSIRGPTIMKGYVGEPEVTSATLL 415 (456)
Q Consensus 339 ~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~-~~~--~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~ 415 (456)
.||+||+++.++.... .....+++|+|+|+++++|+|.+++ ..+ .++..|||+|+|++++.|||++|+.|.+.|.
T Consensus 451 ~YG~TEt~~~~~~~~~--~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~ 528 (696)
T PLN02387 451 GYGLTETCAGATFSEW--DDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYK 528 (696)
T ss_pred eechhhcccceeecCc--ccCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHHHHhhhhc
Confidence 9999999876654322 2335689999999999999984443 322 3445799999999999999999999999983
Q ss_pred --CCC--eeeccceEEEccCCcEEEecccccceee-CCeeecCCCC
Q 012774 416 --PDG--WMRTGDLCYIDEDGFLFIVDRLKDLIKY-KGYQVLPLLN 456 (456)
Q Consensus 416 --~~g--~~~TGDl~~~~~dg~l~~~GR~~d~ik~-~G~~v~p~e~ 456 (456)
.+| ||+|||+|++|+||+|+|.||+||+||+ +|++|+|.||
T Consensus 529 ~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eI 574 (696)
T PLN02387 529 VDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKV 574 (696)
T ss_pred cccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHH
Confidence 345 9999999999999999999999999998 5999999874
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=501.56 Aligned_cols=407 Identities=22% Similarity=0.261 Sum_probs=326.1
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECC-------------------------CCceecHHHHHHHHHHHHHHhHhhcCC
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSV-------------------------TGLRVSFSEFTRRTNSLASYLQNVTRL 92 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~-------------------------~~~~~Ty~eL~~~~~~~a~~L~~~~gi 92 (456)
.|++++|.+.++.+ |+++|+.+.. ..+++||+||.++++++|+.|.+ +|+
T Consensus 69 ~t~~~~~~~~~~~~----p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~-~Gv 143 (700)
T PTZ00216 69 PNFLQRLERICKER----GDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAE-LGL 143 (700)
T ss_pred CCHHHHHHHHHHhC----CCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHH-hCC
Confidence 58999999999999 9999998621 25789999999999999999998 899
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhc------c-CCeEEE
Q 012774 93 SKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK------L-KHRTIL 165 (456)
Q Consensus 93 ~~gd~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~------~-~~~~~~ 165 (456)
++||+|+|+++|+++|+++++||+++|++++|+++.++++++.+++++++++++|++......+.. . ...++.
T Consensus 144 ~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~~ii~ 223 (700)
T PTZ00216 144 TKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTIIY 223 (700)
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhccCCceEEEE
Confidence 999999999999999999999999999999999999999999999999999999998765544321 1 123444
Q ss_pred EcCC------------chhhhhcccC--CCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCC---
Q 012774 166 IDSP------------EFDSMTMSWN--SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--- 228 (456)
Q Consensus 166 ~~~~------------~~~~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~--- 228 (456)
++.. .++++..... ...........++++++++|||||||.||||++||+++.+.+......+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~ 303 (700)
T PTZ00216 224 LDSLPASVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDL 303 (700)
T ss_pred ECCCccccccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccc
Confidence 4321 2333322221 0101112234678999999999999999999999999998876654332
Q ss_pred -CCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecCCCHHHHHH-------HHHHhcceeEEecHHHHHHHhcCCC
Q 012774 229 -PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLK-------AVEEFRVTHAAVTPPIVVAMSKGGS 300 (456)
Q Consensus 229 -~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~-------~i~~~~~t~~~~~P~~~~~l~~~~~ 300 (456)
....+++++++++|++|+++.......+..|+++.+. ++..+.+ .++++++|++.++|.+++.+.+...
T Consensus 304 ~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~---~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~ 380 (700)
T PTZ00216 304 IGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFG---SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVE 380 (700)
T ss_pred cCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEEC---CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHH
Confidence 1236789999999999999886555567778776663 4555554 6889999999999999988764210
Q ss_pred C-------------------------CCC----------------CCCCceEEEecCCCCCHHHHHHHHHhCCCCceEec
Q 012774 301 T-------------------------DGY----------------DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (456)
Q Consensus 301 ~-------------------------~~~----------------~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~ 339 (456)
. ... .-+++|.+++||+++++++.+.++..+ + ++++.
T Consensus 381 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~-~-~l~~~ 458 (700)
T PTZ00216 381 AKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVF-G-MVIQG 458 (700)
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHh-h-hHhhc
Confidence 0 000 015799999999999999998887776 5 99999
Q ss_pred cCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCC-CCCCCCCcceEEEecCCcccccCCCccccccccCCCC
Q 012774 340 YGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETG-DSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG 418 (456)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~-~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g 418 (456)
||+||+++.++... ......+++|+|+++++++|+|.++. ...+++..|||+|+|++++.|||++|+.|++.|+.+|
T Consensus 459 YG~TEt~~~~~~~~--~~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dG 536 (700)
T PTZ00216 459 WGLTETVCCGGIQR--TGDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDG 536 (700)
T ss_pred cCcccccccccccC--CCCCCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcCCcccchhcCChhHhhhhccccC
Confidence 99999987655422 22335689999999999999995432 2345567899999999999999999999999998899
Q ss_pred eeeccceEEEccCCcEEEeccccccee-eCCeeecCCCC
Q 012774 419 WMRTGDLCYIDEDGFLFIVDRLKDLIK-YKGYQVLPLLN 456 (456)
Q Consensus 419 ~~~TGDl~~~~~dg~l~~~GR~~d~ik-~~G~~v~p~e~ 456 (456)
||+|||+|++|+||+|+|+||+||+|| .+|++|+|.||
T Consensus 537 w~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eI 575 (700)
T PTZ00216 537 WFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEAL 575 (700)
T ss_pred CeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHH
Confidence 999999999999999999999999999 79999999874
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-61 Score=491.55 Aligned_cols=414 Identities=19% Similarity=0.229 Sum_probs=333.0
Q ss_pred CCCCCHHH-HhhhcccCCCCCCCCCcEEEECC----CCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHH
Q 012774 35 DAPISAVD-YVSSLRATLPWRDDDTVALINSV----TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP 109 (456)
Q Consensus 35 ~~~~~~~~-~l~~~~~~~~~~~p~~~A~~~~~----~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~ 109 (456)
.+.+|+.. ++.+.+..+ |+++|+++.. ..+++||+||.++++++|+.|++ +|+++||+|+++++|+++++
T Consensus 48 ~~~~n~~~~~l~~~~~~~----p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~Gd~V~i~~~n~~e~v 122 (628)
T TIGR02316 48 GGRTNLCHNALDRHLDER----GEQLALVTVSSETGQERTLTYRQLHREVNVFASALRA-LGVGRGDRVLIYMPMIAEAV 122 (628)
T ss_pred CCEeeHHHHHHHHHhCcC----CCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHH
Confidence 45577754 555566667 9999998731 24689999999999999999998 89999999999999999999
Q ss_pred HHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchH---------HHH----hc---cCCeEEEEcCC----
Q 012774 110 ILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV---------HKL----AK---LKHRTILIDSP---- 169 (456)
Q Consensus 110 ~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~----~~---~~~~~~~~~~~---- 169 (456)
++++||+++|++++|+++.++.+++.+++++++++++|+++... ..+ .. ....+++++..
T Consensus 123 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~ 202 (628)
T TIGR02316 123 FAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPM 202 (628)
T ss_pred HHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc
Confidence 99999999999999999999999999999999999999976421 111 11 12234444321
Q ss_pred --------chhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHH-HhccCCCCCCCCcEEEEe
Q 012774 170 --------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVA-SSFASSPKRVSPAVMLFT 240 (456)
Q Consensus 170 --------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~-~~~~~~~~~~~~~~~~~~ 240 (456)
.+.++..... ..........++++++++|||||||.||||+++|.++..... .....+ ...++|++++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d~~~~~ 280 (628)
T TIGR02316 203 RLIPGRDVDYAALRTQHE-DAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIF-GIRAGQVMFSA 280 (628)
T ss_pred CcccCccccHHHHhhccc-cCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhc-CCCCCcEEEEc
Confidence 1222211110 001111224568999999999999999999999999864433 333334 67788999999
Q ss_pred cchhhHhhH-HHHHHHhHhcceEEEecC----CCHHHHHHHHHHhcceeEEecHHHHHHHhcCCC--CCCCCCCCceEEE
Q 012774 241 MPYFHIYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVA 313 (456)
Q Consensus 241 ~p~~~~~g~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~v~ 313 (456)
.|+.|+.++ ..++.++..|+++++.+. +++..+++.|+++++|+++++|++++.|.+... ....+++++|.++
T Consensus 281 ~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~ 360 (628)
T TIGR02316 281 SDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLF 360 (628)
T ss_pred CCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEE
Confidence 999999886 667889999999999863 578999999999999999999999999987643 2345689999999
Q ss_pred ecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccC--CCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcce
Q 012774 314 CGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG--PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGE 391 (456)
Q Consensus 314 ~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~--~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Ge 391 (456)
+||+++++++.+++++.+ +..+++.||+||++..++.... .......+++|+|++|++++|+|++++++++.|+.||
T Consensus 361 ~gGe~l~~~~~~~~~~~~-~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~Ge 439 (628)
T TIGR02316 361 LAGEPLDEPTAHWITDGL-GKPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGV 439 (628)
T ss_pred EecCCCCHHHHHHHHHHh-CCCEEecccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCCcEE
Confidence 999999999999999888 7899999999999854433221 1112345789999999999999966899999999999
Q ss_pred EEEecC---CcccccCCCcccccccc---CCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 392 LSIRGP---TIMKGYVGEPEVTSATL---LPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 392 l~i~g~---~~~~gy~~~~~~~~~~~---~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|+++|| +++.||+++++.+.+.+ ..++||+|||+|++|+||+++|+||.||+||++|+||+|.||
T Consensus 440 l~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eI 510 (628)
T TIGR02316 440 LTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREI 510 (628)
T ss_pred EEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHH
Confidence 999998 56789999987766543 246799999999999999999999999999999999999875
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=489.85 Aligned_cols=408 Identities=26% Similarity=0.346 Sum_probs=334.0
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEEC------CCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINS------VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPIL 111 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~------~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~ 111 (456)
.|++++|.+.++++ |+++|+++. ...+++||+||.+++.++|+.|++ +|+++||+|+++++|+++++++
T Consensus 25 ~t~~~~l~~~a~~~----p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~-~Gi~~gd~V~i~~~n~~e~~~~ 99 (632)
T PRK07529 25 ASTYELLSRAAARH----PDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHS-LGVGPGDVVAFLLPNLPETHFA 99 (632)
T ss_pred CCHHHHHHHHHHHC----CCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHH
Confidence 59999999999999 999999863 135799999999999999999998 9999999999999999999999
Q ss_pred HHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccch-----HHHHh----cc-CC-eEEEEcCC-----------
Q 012774 112 YFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSV-----VHKLA----KL-KH-RTILIDSP----------- 169 (456)
Q Consensus 112 ~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~----~~-~~-~~~~~~~~----------- 169 (456)
+|||+++| +++|+++.++++++.++++.++++++|++... ..++. .. .. .++.++..
T Consensus 100 ~lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 178 (632)
T PRK07529 100 LWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAV 178 (632)
T ss_pred HHHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCcccccccccccc
Confidence 99999999 56999999999999999999999999997543 12221 11 11 22333321
Q ss_pred ------------chhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEE
Q 012774 170 ------------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVM 237 (456)
Q Consensus 170 ------------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~ 237 (456)
++.+.................++++++++|||||||.||+|.++|+++..+.......+ ...+++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-~~~~~d~~ 257 (632)
T PRK07529 179 PLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLL-GLGPGDTV 257 (632)
T ss_pred cccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhc-CCCCCCEE
Confidence 12222221111101111234668999999999999999999999999988877666655 56889999
Q ss_pred EEecchhhHhhH-HHHHHHhHhcceEEEecC--C-C---HHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCce
Q 012774 238 LFTMPYFHIYGL-FFCFRAAALMETAVVMQR--F-D---LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLE 310 (456)
Q Consensus 238 ~~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~--~-~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr 310 (456)
++.+|++|.+++ ..++.++..|+++++.+. + + ...+++.++++++|++.++|+++..|++... ...+++++|
T Consensus 258 l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-~~~~~~slr 336 (632)
T PRK07529 258 FCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV-DGHDISSLR 336 (632)
T ss_pred EEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc-cCCCccceE
Confidence 999999999988 567889999999998753 1 1 3688999999999999999999999988653 234688999
Q ss_pred EEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcC-CCC---CCCCC
Q 012774 311 TVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDP-ETG---DSLPP 386 (456)
Q Consensus 311 ~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~-~~~---~~~~~ 386 (456)
.+++||+++++++.+++++.+ ++++++.||+||++.++.... .......+++|+|+|+++++|+.. +++ +++++
T Consensus 337 ~v~~gg~~l~~~l~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~-~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~ 414 (632)
T PRK07529 337 YALCGAAPLPVEVFRRFEAAT-GVRIVEGYGLTEATCVSSVNP-PDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAV 414 (632)
T ss_pred EEEEcCCCCCHHHHHHHHHHh-CCcEeeeecccccCcccccCC-ccccccCCCcccccCCceEEEEEcCCCCcccccCCC
Confidence 999999999999999999988 899999999999987665432 222335689999999999998632 445 78999
Q ss_pred CCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 387 GKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 387 g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|+.|||+|+|++++.||++++. +...+..+|||+|||+|++|+||++++.||.||+||++|++|+|.||
T Consensus 415 g~~Gel~v~gp~v~~GY~~~~~-~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eI 483 (632)
T PRK07529 415 DEVGVLCIAGPNVFSGYLEAAH-NKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAI 483 (632)
T ss_pred CCceEEEEECCCccccccCCcc-ccccccCCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHH
Confidence 9999999999999999998654 55566578999999999999999999999999999999999999874
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-60 Score=489.24 Aligned_cols=414 Identities=20% Similarity=0.246 Sum_probs=335.8
Q ss_pred CCCCCHHHHhh-hcccCCCCCCCCCcEEEECCC----CceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHH
Q 012774 35 DAPISAVDYVS-SLRATLPWRDDDTVALINSVT----GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP 109 (456)
Q Consensus 35 ~~~~~~~~~l~-~~~~~~~~~~p~~~A~~~~~~----~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~ 109 (456)
++.+|+...+. +.++.+ |+++|+++..+ .+++||+||.+++.++|+.|++ +|+++||+|+++++|+++++
T Consensus 53 ~~~~n~~~~~l~~~~~~~----p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~ 127 (625)
T TIGR02188 53 GGELNVSYNCVDRHLEAR----PDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKS-LGVKKGDRVAIYMPMIPEAA 127 (625)
T ss_pred CCEEEHHHHHHHHhhccC----CCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHH
Confidence 45567766554 456666 99999987422 3589999999999999999998 99999999999999999999
Q ss_pred HHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchH---------HH----HhccC--C-eEEEEcCC----
Q 012774 110 ILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV---------HK----LAKLK--H-RTILIDSP---- 169 (456)
Q Consensus 110 ~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~----~~~~~--~-~~~~~~~~---- 169 (456)
++++||+++|++++|+++.++.+++.+++++++++++|+++... .. +.... . .+++++..
T Consensus 128 ~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (625)
T TIGR02188 128 IAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPV 207 (625)
T ss_pred HHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCc
Confidence 99999999999999999999999999999999999999986532 11 11111 1 23333211
Q ss_pred --------chhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEec
Q 012774 170 --------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTM 241 (456)
Q Consensus 170 --------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~ 241 (456)
.++++..... .........++++++++|||||||.||+|+++|+++..+.............+|++++..
T Consensus 208 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 285 (625)
T TIGR02188 208 PWVEGRDVWWHDLMAKAS--AYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTA 285 (625)
T ss_pred CccccccccHHHHHhhcC--CCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECC
Confidence 1222221111 011222356789999999999999999999999998765544333322577889999999
Q ss_pred chhhHhhH-HHHHHHhHhcceEEEecC----CCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCC--CCCCCCCceEEEe
Q 012774 242 PYFHIYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVAC 314 (456)
Q Consensus 242 p~~~~~g~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~v~~ 314 (456)
|++|+.+. ..++.++..|+++++.+. +++..+++.|+++++|+++++|++++.|.+.... ...+++++|.+++
T Consensus 286 ~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~ 365 (625)
T TIGR02188 286 DVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGS 365 (625)
T ss_pred CchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEE
Confidence 99999887 567889999999998753 4899999999999999999999999999876432 3356889999999
Q ss_pred cCCCCCHHHHHHHHHhCC--CCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCC-CCCcce
Q 012774 315 GAAPLGKDTIMAFASKFP--KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLP-PGKEGE 391 (456)
Q Consensus 315 gG~~~~~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~-~g~~Ge 391 (456)
||+++++++++++.+.++ ++++++.||+||+++.++.........+.+++|+|++|++++|+| ++|+.++ +|+.||
T Consensus 366 ~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~~~g~~Ge 444 (625)
T TIGR02188 366 VGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVEGPGEGGY 444 (625)
T ss_pred ecCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCCCCCCeEE
Confidence 999999999999999884 378999999999987755432222234568899999999999999 7889999 899999
Q ss_pred EEEec--CCcccccCCCccccccccC--CCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 392 LSIRG--PTIMKGYVGEPEVTSATLL--PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 392 l~i~g--~~~~~gy~~~~~~~~~~~~--~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|+++| |+++.||+++++.+.+.+. .+|||+|||+|++|+||++++.||.||+||++|++|+|.||
T Consensus 445 L~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eI 513 (625)
T TIGR02188 445 LVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEI 513 (625)
T ss_pred EEEccCCCcccccccCChHHHHHHHhccCCCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHH
Confidence 99999 6899999999987776654 37899999999999999999999999999999999999875
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-60 Score=482.13 Aligned_cols=405 Identities=30% Similarity=0.482 Sum_probs=348.0
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhc-CCCCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVT-RLSKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~-gi~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
.++.++|.+.+.++ |+++|+++. ++++||+||.+++.++|..|.+ . |+++||+|+++++|+++++++++||+
T Consensus 10 ~tl~~~l~~~a~~~----~~~~a~~~~--~~~~Ty~~l~~~v~~~a~~L~~-~~g~~~g~~V~i~~~~~~~~~~~~lA~~ 82 (546)
T PRK08314 10 TSLFHNLEVSARRY----PDKTAIVFY--GRAISYRELLEEAERLAGYLQQ-ECGVRKGDRVLLYMQNSPQFVIAYYAIL 82 (546)
T ss_pred CCHHHHHHHHHHHc----CCCcceeec--CceecHHHHHHHHHHHHHHHHH-hhCCCCCCEEEEECCCChHHHHHHHHHH
Confidence 78999999999999 999999987 7899999999999999999998 6 99999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc----CCe-EEEEcCC----------------------
Q 012774 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHR-TILIDSP---------------------- 169 (456)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~-~~~~~~~---------------------- 169 (456)
++|++++|+++..+.+++.++++.++++++|++++....+... ... +++....
T Consensus 83 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (546)
T PRK08314 83 RANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQ 162 (546)
T ss_pred HcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhccCcceEEEecchhhcccccccCcccccccccccc
Confidence 9999999999999999999999999999999998776655432 112 1111100
Q ss_pred --------chhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEec
Q 012774 170 --------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTM 241 (456)
Q Consensus 170 --------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~ 241 (456)
.+++..... ..........+++++++|||||||.||+|.++|+++..++......+ .....|++++.+
T Consensus 163 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~l~~~ 238 (546)
T PRK08314 163 ALAPGGVVAWKEALAAG---LAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWS-NSTPESVVLAVL 238 (546)
T ss_pred cccccccccHHHHhccc---CCCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-CCCCCceEEEEc
Confidence 011111000 01112234668999999999999999999999999998888776666 678899999999
Q ss_pred chhhHhhH-HHHHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCC
Q 012774 242 PYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLG 320 (456)
Q Consensus 242 p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~ 320 (456)
|++|.+|+ ..++.++..|+++++.+.+++..+++.++++++|++.++|+++..+.........+++++|.+++||++++
T Consensus 239 p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~ 318 (546)
T PRK08314 239 PLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMP 318 (546)
T ss_pred CchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCchhhheeeeccccCC
Confidence 99999998 56778999999999999999999999999999999999999999998765555567889999999999999
Q ss_pred HHHHHHHHHhCCCCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcc
Q 012774 321 KDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIM 400 (456)
Q Consensus 321 ~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~ 400 (456)
+++++++.+.+ +.++++.||+||++...... .......+++|.|+++++++|+|+++++.++.|+.|||+++|++++
T Consensus 319 ~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~--~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~ 395 (546)
T PRK08314 319 EAVAERLKELT-GLDYVEGYGLTETMAQTHSN--PPDRPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVF 395 (546)
T ss_pred HHHHHHHHHHc-CCcEEecccccccccceecC--CCcCCCCCccCcccCCeEEEEEeCCCCcCCCCCCceEEEEECCchh
Confidence 99999999988 78999999999998765442 2222345789999999999999988899999999999999999999
Q ss_pred cccCCCccccccccCC---CCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 401 KGYVGEPEVTSATLLP---DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 401 ~gy~~~~~~~~~~~~~---~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
.||+++++.+++.|.. ++||+|||+|+++++|++++.||.||+||++|++|+|.||
T Consensus 396 ~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eI 454 (546)
T PRK08314 396 KGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEV 454 (546)
T ss_pred ccccCChhHhhhhhhhcCCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHH
Confidence 9999999988887642 3599999999999999999999999999999999999875
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-60 Score=481.04 Aligned_cols=409 Identities=24% Similarity=0.387 Sum_probs=345.7
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCC----CceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVT----GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~----~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~l 113 (456)
.++.+.+.+.++.+ |+++|+++... .+++||+||.++++++|+.|.+ .|+++||+|+++++|+++++++++
T Consensus 24 ~~l~~~l~~~a~~~----p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~-~g~~~g~~Val~~~n~~e~~~~~l 98 (547)
T PRK13295 24 RTINDDLDACVASC----PDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLAR-LGVGRGDVVSCQLPNWWEFTVLYL 98 (547)
T ss_pred CCHHHHHHHHHHHC----CCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCChHHHHHHH
Confidence 68999999999999 99999998631 2799999999999999999998 899999999999999999999999
Q ss_pred HHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccch-----HH---HHh-cc-CC-eEEEEcCC---chhhhhccc-
Q 012774 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSV-----VH---KLA-KL-KH-RTILIDSP---EFDSMTMSW- 178 (456)
Q Consensus 114 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~---~~~-~~-~~-~~~~~~~~---~~~~~~~~~- 178 (456)
||+++|++++|+++.++.+++.++++.++++++++++.. .+ .+. .. .. .++.++.. ++.++....
T Consensus 99 a~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (547)
T PRK13295 99 ACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDGADSFEALLITPA 178 (547)
T ss_pred HHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCCCccCHHHHhhCCc
Confidence 999999999999999999999999999999999998753 11 111 11 11 23333321 233332111
Q ss_pred -C--CC--ccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhH-HHH
Q 012774 179 -N--SK--HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFC 252 (456)
Q Consensus 179 -~--~~--~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~ 252 (456)
. .. ..........+++++++|||||||.||+|+++|+++..++......+ ....++++++.+|++|..++ ..+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~l~~~p~~h~~g~~~~~ 257 (547)
T PRK13295 179 WEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERL-GLGADDVILMASPMAHQTGFMYGL 257 (547)
T ss_pred cccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHh-CCCCCCeEEEecCchhhhhHHHHH
Confidence 0 00 01111234568999999999999999999999999988887766666 67889999999999999987 567
Q ss_pred HHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCC
Q 012774 253 FRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFP 332 (456)
Q Consensus 253 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~ 332 (456)
+.++..|+++++.+.+++..+++.++++++|++.++|+++..+..........++++|.+++||+++++++.+++++.+
T Consensus 258 ~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~- 336 (547)
T PRK13295 258 MMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAAL- 336 (547)
T ss_pred HHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCcccceEEEEecCCCCHHHHHHHHHHh-
Confidence 8899999999999888999999999999999999999999999987666666789999999999999999999999998
Q ss_pred CCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCcccccc
Q 012774 333 KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSA 412 (456)
Q Consensus 333 ~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~ 412 (456)
++++++.||+||++.+.+............++|+|+++++++|+| +++++++.|+.|||+|+|+.++.||+++++.+..
T Consensus 337 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~ 415 (547)
T PRK13295 337 GAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVD-ADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGT 415 (547)
T ss_pred CCCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEEC-CCCCCCCCCCCCeEEEEcCcccccccCCcccccc
Confidence 899999999999987655432222223346889999999999999 6788999999999999999999999999998877
Q ss_pred ccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 413 TLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 413 ~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
. .+|||+|||+|+++++|++++.||.||+||++|++|+|.|+
T Consensus 416 ~--~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~I 457 (547)
T PRK13295 416 D--ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEI 457 (547)
T ss_pred C--CCCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHH
Confidence 6 57899999999999999999999999999999999999764
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-62 Score=476.41 Aligned_cols=393 Identities=33% Similarity=0.522 Sum_probs=323.1
Q ss_pred hhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEe
Q 012774 44 VSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIIS 123 (456)
Q Consensus 44 l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~~G~~~v 123 (456)
|.++|+++ ||++|+++ +.++++||+||.++++++|..|.+ +|+++||+|+++++|+++++++++||+++|++++
T Consensus 1 f~~~a~~~----pd~~a~~~-~~~~~~Ty~~l~~~v~~la~~L~~-~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v 74 (417)
T PF00501_consen 1 FERQAQRY----PDRIALID-DEGRSLTYKQLYERVRKLAAALRK-LGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPV 74 (417)
T ss_dssp HHHHHHHS----TTSEEEEE-TTTEEEEHHHHHHHHHHHHHHHHH-TTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEE
T ss_pred ChhHHhhC----CCceEEEE-CCCEEEEHHHHHHHHHHHhhHHHH-hCCCccccccccCCccceeeeeeccccccccccc
Confidence 45677888 99999999 348999999999999999999997 9999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHhhhcCCeEEEE----ccchHHHHh---c---cCCeEEEEcCCch---hhhhcccCCCccccccC-C
Q 012774 124 PANPVNTESEISRQIQLSNPVIAFA----TSSVVHKLA---K---LKHRTILIDSPEF---DSMTMSWNSKHELDRAK-V 189 (456)
Q Consensus 124 ~l~~~~~~~~l~~~l~~~~~~~vi~----~~~~~~~~~---~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~ 189 (456)
|++|.++.+++.++++.++++++|+ +......+. . ....++.++...+ +.+....... ... .. .
T Consensus 75 ~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~ 152 (417)
T PF00501_consen 75 PLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDLPKKEALKSASLSD-EPQ-SPED 152 (417)
T ss_dssp EEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSCTTCHHHHHHHHCH-CSH-STTH
T ss_pred ccccccccccccccccccceeEEEEeccccccccccchhhhcccccccccccccccccccccccccccccc-ccc-cCCC
Confidence 9999999999999999999999997 222222222 1 1122444442221 1111110000 000 00 1
Q ss_pred CCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhc--cCCCCCCCCcEEEEecchhhHhhH-HHHHHHhHhcceEEEec
Q 012774 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF--ASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQ 266 (456)
Q Consensus 190 ~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~~~~~ 266 (456)
.++++++++|||||||.||+|.++|+++.+.+.... ... ... |++++.+|++|.+++ ..++.++..|+++++.+
T Consensus 153 ~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~-~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~ 229 (417)
T PF00501_consen 153 SPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYF-GLG--DRILSFLPLSHIFGLISALLAALFSGATLVLPS 229 (417)
T ss_dssp TTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTT-TTT--TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEES
T ss_pred CccceeEeecccccccccccccccccccccccccccccccc-ccC--ceEEeeccccccccccccccccccccccccccc
Confidence 568999999999999999999999999998877753 222 222 599999999999999 88999999999999998
Q ss_pred CCC---HHHHHHHHHHhcceeEEecHHHHHHHhcCCCC----CCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEec
Q 012774 267 RFD---LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST----DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (456)
Q Consensus 267 ~~~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~ 339 (456)
..+ ++.+++.++++++|+++++|+++..+++.... ...+++++|.+++||+++++++.+++++.++..++++.
T Consensus 230 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~ 309 (417)
T PF00501_consen 230 PFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINL 309 (417)
T ss_dssp SHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEE
T ss_pred cccccccccchhcccccccccccccccccccccccccccccccccccccccccccccccCChhhccccccccccccceec
Confidence 754 47789999999999999999999999983222 23578899999999999999999999999955699999
Q ss_pred cCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCe
Q 012774 340 YGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGW 419 (456)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~ 419 (456)
||+||++.+++.........+.+++|.|+|+++++|+|++++++++.|+.|||+|+|+.++.||+++++.+.+.|..+||
T Consensus 310 YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~ 389 (417)
T PF00501_consen 310 YGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGW 389 (417)
T ss_dssp EEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSE
T ss_pred ccccccceeeecccccccccccccccccccccccccccccccccccccccccccccCCccceeeeccccccccccccccc
Confidence 99999999887543233444678899999999999999777999999999999999999999999999999999976689
Q ss_pred eeccceEEEccCCcEEEecccccceeeC
Q 012774 420 MRTGDLCYIDEDGFLFIVDRLKDLIKYK 447 (456)
Q Consensus 420 ~~TGDl~~~~~dg~l~~~GR~~d~ik~~ 447 (456)
|+|||+|++|+||+++++||.||+||++
T Consensus 390 ~~TGD~g~~d~~G~~~~~GR~~~~i~~~ 417 (417)
T PF00501_consen 390 YRTGDLGRLDEDGYLYILGRSDDMIKVR 417 (417)
T ss_dssp EEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred eecceEEEECCCCeEEEEEeeCCEEEeC
Confidence 9999999999999999999999999985
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-60 Score=485.32 Aligned_cols=414 Identities=20% Similarity=0.269 Sum_probs=334.0
Q ss_pred CCCCCHHH-HhhhcccCCCCCCCCCcEEEECC----CCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHH
Q 012774 35 DAPISAVD-YVSSLRATLPWRDDDTVALINSV----TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP 109 (456)
Q Consensus 35 ~~~~~~~~-~l~~~~~~~~~~~p~~~A~~~~~----~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~ 109 (456)
++.+|+.. .+.+.++++ |+++|+++.. ..+++||+||.++++++|+.|.+ +|+++||+|+++++|+++++
T Consensus 63 ~~~~n~~~~~l~~~~~~~----p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~ 137 (637)
T PRK00174 63 DGELNVSYNCLDRHLKTR----GDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKS-LGVKKGDRVAIYMPMIPEAA 137 (637)
T ss_pred CCEeEHHHHHHHHhhccC----CCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHH
Confidence 45567655 455566677 9999998642 23589999999999999999998 99999999999999999999
Q ss_pred HHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchH---------HHH----hcc-CC-eEEEEcCC-----
Q 012774 110 ILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV---------HKL----AKL-KH-RTILIDSP----- 169 (456)
Q Consensus 110 ~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~----~~~-~~-~~~~~~~~----- 169 (456)
++++||+++|++++|+++.++.+++.+++++++++++|+++... ..+ ... .. .+++++..
T Consensus 138 ~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (637)
T PRK00174 138 VAMLACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVD 217 (637)
T ss_pred HHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcC
Confidence 99999999999999999999999999999999999999976532 111 111 11 23333211
Q ss_pred -------chhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecc
Q 012774 170 -------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMP 242 (456)
Q Consensus 170 -------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p 242 (456)
.+.++..... ..........+++++++|||||||.||+|+++|++++.+.............+|++++..|
T Consensus 218 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 295 (637)
T PRK00174 218 WVEGRDLWWHELVAGAS--DECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTAD 295 (637)
T ss_pred cCCCCcccHHHHHhhcC--CCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCC
Confidence 1222222111 0111223466899999999999999999999999987654433322225677899999999
Q ss_pred hhhHhhH-HHHHHHhHhcceEEEecC----CCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCC--CCCCCCCceEEEec
Q 012774 243 YFHIYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACG 315 (456)
Q Consensus 243 ~~~~~g~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~v~~g 315 (456)
++|..+. ..++.++..|+++++.+. +++..+++.|+++++|++.++|++++.|++.... ...+++++|.+++|
T Consensus 296 ~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~ 375 (637)
T PRK00174 296 VGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSV 375 (637)
T ss_pred chHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEe
Confidence 9999887 567889999999998753 4799999999999999999999999999886432 23567899999999
Q ss_pred CCCCCHHHHHHHHHhCC--CCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEE
Q 012774 316 AAPLGKDTIMAFASKFP--KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELS 393 (456)
Q Consensus 316 G~~~~~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~ 393 (456)
|+++++++.+++.+.++ ++++++.||+||++..+..........+.+++|+|++|++++|+| +++++++.|+.|||+
T Consensus 376 Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~~~~~g~~Gel~ 454 (637)
T PRK00174 376 GEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVD-EEGNPLEGGEGGNLV 454 (637)
T ss_pred CCCCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCCCCCCcCCCcccCCCCCceEEEEC-CCCCCCCCCCcEEEE
Confidence 99999999999998874 378999999999987655422211223467899999999999999 778999999999999
Q ss_pred Eec--CCcccccCCCccccccccC--CCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 394 IRG--PTIMKGYVGEPEVTSATLL--PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 394 i~g--~~~~~gy~~~~~~~~~~~~--~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
++| |+++.||+++++.+.+.+. .+|||+|||+|++|+||+++|.||.||+||++|++|+|.||
T Consensus 455 v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eI 521 (637)
T PRK00174 455 IKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEI 521 (637)
T ss_pred EcCCCCcccccccCCHHHHHHhhhcCCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHH
Confidence 999 6899999999987776652 37899999999999999999999999999999999999875
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-60 Score=477.88 Aligned_cols=400 Identities=22% Similarity=0.295 Sum_probs=337.6
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.++.++|.+.++++ |+++|+++. ++++||+||.++++++|+.|.+ +|+++||+|+++++|+++++++++||++
T Consensus 43 ~~~~~~l~~~a~~~----p~~~a~~~~--~~~~Ty~el~~~~~~~A~~L~~-~g~~~g~~V~i~~~n~~~~~~~~lA~~~ 115 (537)
T PRK13382 43 MGPTSGFAIAAQRC----PDRPGLIDE--LGTLTWRELDERSDALAAALQA-LPIGEPRVVGIMCRNHRGFVEALLAANR 115 (537)
T ss_pred CCHHHHHHHHHHhC----CCCeEEEeC--CCeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEecCcHHHHHHHHHHHH
Confidence 68999999999999 999999987 7799999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc------CCeEEEEcCC----chhhhhcccCCCcccccc
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KHRTILIDSP----EFDSMTMSWNSKHELDRA 187 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 187 (456)
+|++++|+++.++.+++.++++.++++++|++.+....+... ...++.++.. .++.+..... . ...
T Consensus 116 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~ 191 (537)
T PRK13382 116 IGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDEDHDLTVEVLIAAHA---G-QRP 191 (537)
T ss_pred cCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCcccccHHHHhhccC---c-CCC
Confidence 999999999999999999999999999999998766544321 1112222211 1222221111 0 011
Q ss_pred CCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecC
Q 012774 188 KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR 267 (456)
Q Consensus 188 ~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~ 267 (456)
....++.++++|||||||.||+|+++|+++..........+ ....+++++...|++|.+++..++.++..|+++++...
T Consensus 192 ~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~g~~~~~~~l~~g~~~~~~~~ 270 (537)
T PRK13382 192 EPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRT-PWRAEEPTVIVAPMFHAWGFSQLVLAASLACTIVTRRR 270 (537)
T ss_pred CCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhh-CCCCCCeEEEecChHhhhHHHHHHHHHhcCcEEEECCC
Confidence 23457889999999999999999999998887777666655 56788899999999999999888899999999999889
Q ss_pred CCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCC--CCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCcccc
Q 012774 268 FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES 345 (456)
Q Consensus 268 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~ 345 (456)
++++.+++.|+++++|++.++|+++..|++.... ...+++++|.+++||+++++++++.|.+.+ +.++++.||+||+
T Consensus 271 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~TE~ 349 (537)
T PRK13382 271 FDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQF-GDVIYNNYNATEA 349 (537)
T ss_pred cCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHc-CCcEEeccccccc
Confidence 9999999999999999999999999999876432 234567899999999999999999999998 6789999999999
Q ss_pred ccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccce
Q 012774 346 TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDL 425 (456)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl 425 (456)
+.++..... ......+++|+|+++++++|+| +++++++.|+.|||+++|+.++.||+ ++.+.. + .+|||+|||+
T Consensus 350 ~~~~~~~~~-~~~~~~~~vG~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~--~~~~~~-~-~~g~~~TGDl 423 (537)
T PRK13382 350 GMIATATPA-DLRAAPDTAGRPAEGTEIRILD-QDFREVPTGEVGTIFVRNDTQFDGYT--SGSTKD-F-HDGFMASGDV 423 (537)
T ss_pred CcceecChh-HhccCCCCccccCcCcEEEEEC-CCCCCCCCCCeeEEEEEcCCcccCcc--ccchhh-c-cCCCEeeCce
Confidence 876554321 1223567899999999999999 67889999999999999999999998 444433 4 3799999999
Q ss_pred EEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 426 CYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 426 ~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+++++||++++.||.||+||++|++|+|.|+
T Consensus 424 ~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eI 454 (537)
T PRK13382 424 GYLDENGRLFVVGRDDEMIVSGGENVYPIEV 454 (537)
T ss_pred EEEeCCCcEEEeccccceeEECCEEECHHHH
Confidence 9999999999999999999999999999874
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-60 Score=481.07 Aligned_cols=405 Identities=23% Similarity=0.345 Sum_probs=331.0
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCC--------ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTG--------LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP 109 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~--------~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~ 109 (456)
+|+.+++.+.++++ |+++|+++.+.+ +++||+||.++++++|+.|.+ .|+++||+|+++++|+++++
T Consensus 6 ~~~~~~l~~~a~~~----p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~-~g~~~gd~V~~~~~n~~~~~ 80 (552)
T PRK09274 6 ANIARHLPRAAQER----PDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNA-AGIGRGMRAVLMVTPSLEFF 80 (552)
T ss_pred hhHHHHHHHHHHhC----CCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCcHHHH
Confidence 68999999999988 999999885322 289999999999999999998 89999999999999999999
Q ss_pred HHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEcc--chHHHHhcc---CC-eEEEEcC------Cchhhhhcc
Q 012774 110 ILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATS--SVVHKLAKL---KH-RTILIDS------PEFDSMTMS 177 (456)
Q Consensus 110 ~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~--~~~~~~~~~---~~-~~~~~~~------~~~~~~~~~ 177 (456)
++++||+++|++++|++|.++.+++.++++.++++++|+++ .....+... .. .++.++. ..+.++...
T Consensus 81 ~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 160 (552)
T PRK09274 81 ALTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWGKPSVRRLVTVGGRLLWGGTTLATLLRD 160 (552)
T ss_pred HHHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccCccchhheeccccccccCCccHHHhccc
Confidence 99999999999999999999999999999999999999875 222222211 11 1222221 123332211
Q ss_pred cCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhH
Q 012774 178 WNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAA 257 (456)
Q Consensus 178 ~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~ 257 (456)
.. ..........++++++++|||||||.||+|.++|+++...+......+ ...++++.++.+|++|.+++ .
T Consensus 161 ~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~~~~~pl~~~~~~-------~ 231 (552)
T PRK09274 161 GA-AAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDY-GIEPGEIDLPTFPLFALFGP-------A 231 (552)
T ss_pred Cc-cccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHh-CCCCCceeeeccCHHHhhhh-------h
Confidence 11 011122334668999999999999999999999999998887766666 67788999999999876543 3
Q ss_pred hcceEEEec-------CCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHh
Q 012774 258 LMETAVVMQ-------RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASK 330 (456)
Q Consensus 258 ~G~~~~~~~-------~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~ 330 (456)
.|+++++.+ .++++.+++.|+++++|+++++|+++..|.+.......+++++|.+++||+++++++.+++++.
T Consensus 232 ~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~ 311 (552)
T PRK09274 232 LGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIERFRAM 311 (552)
T ss_pred hCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCCCchhhEEEecCCcCCHHHHHHHHHH
Confidence 577777654 4689999999999999999999999999998765556678999999999999999999999999
Q ss_pred CC-CCceEeccCccccccccccccCC------C--CCCCCCccccccCCcEEEEEcCC--------CCCCCCCCCcceEE
Q 012774 331 FP-KVVLVQAYGLTESTAGVFRTVGP------D--ECRRWGSTGRLSAGLEAKIVDPE--------TGDSLPPGKEGELS 393 (456)
Q Consensus 331 ~~-~~~i~~~yG~tE~~~~~~~~~~~------~--~~~~~~~~G~~~~~~~~~i~d~~--------~~~~~~~g~~Gel~ 393 (456)
++ ++++++.||+||++.+++..... . ......++|+|+++++++|+|+. +++.++.|+.|||+
T Consensus 312 ~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~ 391 (552)
T PRK09274 312 LPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIV 391 (552)
T ss_pred cCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCeeEEE
Confidence 96 48999999999998765432111 0 11122478999999999999853 46788999999999
Q ss_pred EecCCcccccCCCcccccccc--CCCC--eeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 394 IRGPTIMKGYVGEPEVTSATL--LPDG--WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 394 i~g~~~~~gy~~~~~~~~~~~--~~~g--~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
++|+.++.||+++++.+...+ +.+| ||+|||+|++|+||++++.||.||+||++|++|+|.||
T Consensus 392 v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eI 458 (552)
T PRK09274 392 VAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPC 458 (552)
T ss_pred EecCcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHH
Confidence 999999999999999888765 3356 99999999999999999999999999999999999875
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-60 Score=489.21 Aligned_cols=422 Identities=24% Similarity=0.321 Sum_probs=334.6
Q ss_pred ceeeCCCCCCCCCCCCCCCCHHHHhhhcccCCCCCCCCCcEEEECC-------CCceecHHHHHHHHHHHHHHhHhhcCC
Q 012774 20 KTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSV-------TGLRVSFSEFTRRTNSLASYLQNVTRL 92 (456)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~A~~~~~-------~~~~~Ty~eL~~~~~~~a~~L~~~~gi 92 (456)
|.|+.+.+....-.+....|+.++|.+.++.+ |+++|+++.+ ..+.+||+||.++++++|+.|.+ . +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~----~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-~-~ 76 (631)
T PRK07769 3 MAFHNPFDVNGKIRFPPNTNLVRHVERWAKVR----GDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQ-V-T 76 (631)
T ss_pred cccCCcccccccccccccCCHHHHHHHHHHhC----CCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHH-h-c
Confidence 34444443332222334479999999999888 9999998631 12589999999999999999988 5 8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecC-CCCCC--HHHHHHHhhhcCCeEEEEccchHHHHhcc----C----C
Q 012774 93 SKNDTAFVLSTNSIEIPILYFSLLSLGVIISPA-NPVNT--ESEISRQIQLSNPVIAFATSSVVHKLAKL----K----H 161 (456)
Q Consensus 93 ~~gd~V~l~~~~~~~~~~~~la~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~----~ 161 (456)
++||+|+++++|++++++++|||+++|++++|+ ++..+ .+++.+++++++++++|++++....+.+. . .
T Consensus 77 ~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~ 156 (631)
T PRK07769 77 KPGDRVAILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERP 156 (631)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccc
Confidence 999999999999999999999999999999999 45554 67899999999999999998765544321 1 1
Q ss_pred eEEEEcCCchhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEec
Q 012774 162 RTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTM 241 (456)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~ 241 (456)
.++.++.. .. ... . ........++++++++|||||||.||+|+++|+++...+......+ ....++++++++
T Consensus 157 ~~~~~~~~--~~---~~~-~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~ 228 (631)
T PRK07769 157 RVIAVDAV--PD---EVG-A-TWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDAL-EGQEGDRGVSWL 228 (631)
T ss_pred eEEEcccc--cc---ccc-c-ccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHc-CCCCcceEEEeC
Confidence 22222211 00 000 0 1111234568999999999999999999999999988877666665 577889999999
Q ss_pred chhhHhhHHHHHHHhHhcceEEEecC--C--CHHHHHHHHHHhcc---eeEEecHHHHHHHhcC---CC--CCCCCCCCc
Q 012774 242 PYFHIYGLFFCFRAAALMETAVVMQR--F--DLKMMLKAVEEFRV---THAAVTPPIVVAMSKG---GS--TDGYDLSSL 309 (456)
Q Consensus 242 p~~~~~g~~~~~~~l~~G~~~~~~~~--~--~~~~~~~~i~~~~~---t~~~~~P~~~~~l~~~---~~--~~~~~l~~l 309 (456)
|++|.+|+...+.+++.|+++++... + ++..+++.+.++++ +.+.++|+++..+... .. ....+++++
T Consensus 229 Pl~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~l 308 (631)
T PRK07769 229 PFFHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNV 308 (631)
T ss_pred CCcCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhhe
Confidence 99999999777778888999888752 4 89999999999886 7889999988766542 11 113568899
Q ss_pred eEEEecCCCCCHHHHHHHHHhCC-----CCceEeccCccccccccccccCCCC-------------------------CC
Q 012774 310 ETVACGAAPLGKDTIMAFASKFP-----KVVLVQAYGLTESTAGVFRTVGPDE-------------------------CR 359 (456)
Q Consensus 310 r~v~~gG~~~~~~~~~~~~~~~~-----~~~i~~~yG~tE~~~~~~~~~~~~~-------------------------~~ 359 (456)
|.+++||+++++++.++|.+.|+ ...+++.||+||++..++....... ..
T Consensus 309 r~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 388 (631)
T PRK07769 309 KGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAV 388 (631)
T ss_pred eeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCce
Confidence 99999999999999999999872 3469999999998765543221110 00
Q ss_pred CCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCC-----------------CCeeec
Q 012774 360 RWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP-----------------DGWMRT 422 (456)
Q Consensus 360 ~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~-----------------~g~~~T 422 (456)
...++|+|.++.+++|+|+++++.++.|+.|||+|+|++++.||+++++.+++.|.. +|||+|
T Consensus 389 ~~~s~G~~~~~~~~~ivd~~~g~~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~T 468 (631)
T PRK07769 389 AQVSAGKVGVSEWAVIVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRT 468 (631)
T ss_pred eEEeCCCcCCCcEEEEEcCCCCcCCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeec
Confidence 124789999999999999778999999999999999999999999999999888742 489999
Q ss_pred cceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 423 GDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 423 GDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
||+|++ +||+|+|+||.||+||++|++|+|.||
T Consensus 469 GDlg~~-~dG~l~i~GR~~d~Ik~~G~~V~p~eI 501 (631)
T PRK07769 469 GDYGVY-FDGELYITGRVKDLVIIDGRNHYPQDL 501 (631)
T ss_pred cccccE-ECCEEEEEcccccEEEECCeeeCHHHH
Confidence 999999 499999999999999999999999875
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-60 Score=471.38 Aligned_cols=399 Identities=19% Similarity=0.297 Sum_probs=340.4
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
|++.+.|.+.++++ |+++|+++. +.++||.||.++++++|+.|.+ .| .+|++|+|+++|+++++++++||++
T Consensus 1 ~~~~~~~~~~a~~~----p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~-~~-~~~~~v~i~~~~~~~~~~~~la~~~ 72 (487)
T PRK07638 1 MGITKEYKKHASLQ----PNKIAIKEN--DRVLTYKDWFESVCKVANWLNE-KE-SKNKTIAILLENRIEFLQLFAGAAM 72 (487)
T ss_pred CChHHHHHHHHHhC----CCCeEEecC--CcEeeHHHHHHHHHHHHHHHHH-hC-CCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 57889999999998 999999987 7899999999999999999998 67 4899999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccCCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEEE
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 197 (456)
+|++++|+++.++.+++.++++.++++++++++.....+.....+++.++ .+......... .........++++++
T Consensus 73 ~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~a~i 148 (487)
T PRK07638 73 AGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDEEGRVIEID--EWKRMIEKYLP--TYAPIENVQNAPFYM 148 (487)
T ss_pred cCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhccceEEEeh--hhhhhhhhccc--cccccccCCCCcEEE
Confidence 99999999999999999999999999999999866555443333333332 22222111110 111122345678999
Q ss_pred EcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecCCCHHHHHHHH
Q 012774 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAV 277 (456)
Q Consensus 198 ~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i 277 (456)
+|||||||.||+|+++|+++..++......+ ....+|+++...|++|..++...+.++..|+++++.+.+++..+++.|
T Consensus 149 ~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~~~~~~l~~~~~l~~~~~~l~~g~~~~~~~~~~~~~~~~~i 227 (487)
T PRK07638 149 GFTSGSTGKPKAFLRAQQSWLHSFDCNVHDF-HMKREDSVLIAGTLVHSLFLYGAISTLYVGQTVHLMRKFIPNQVLDKL 227 (487)
T ss_pred EeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-CcCCCCEEEEeecchHHHHHHHHHHHHccCcEEEEcCCCCHHHHHHHH
Confidence 9999999999999999999988887766666 678889999999999998888888999999999999999999999999
Q ss_pred HHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccCCCC
Q 012774 278 EEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDE 357 (456)
Q Consensus 278 ~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~ 357 (456)
+++++|++.++|+++..|.+... ...+.+.++++|++++.++.+++++.+++.++++.||+||++.++.... ...
T Consensus 228 ~~~~~t~~~~~P~~~~~l~~~~~----~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~-~~~ 302 (487)
T PRK07638 228 ETENISVMYTVPTMLESLYKENR----VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVD-EES 302 (487)
T ss_pred HHcCCeEEEeCcHHHHHHHhCcC----cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecc-ccc
Confidence 99999999999999999988622 2345667788999999999999999999999999999999987655432 223
Q ss_pred CCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEe
Q 012774 358 CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIV 437 (456)
Q Consensus 358 ~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~ 437 (456)
....+++|+|+++++++|+| +++.++++|+.|||+++|+.++.||+++++.+.+.+ .+|||+|||+|++|+||++++.
T Consensus 303 ~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~d~~g~l~i~ 380 (487)
T PRK07638 303 ERRPNSVGRPFHNVQVRICN-EAGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARELN-ADGWMTVRDVGYEDEEGFIYIV 380 (487)
T ss_pred CCCCCCCCcccCCcEEEEEC-CCCCCCCCCCCeEEEEecccceeeecCCHHHHhhhc-cCCcEecCccEeEcCCCeEEEE
Confidence 34567899999999999999 678999999999999999999999999998776654 6899999999999999999999
Q ss_pred cccccceeeCCeeecCCCC
Q 012774 438 DRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 438 GR~~d~ik~~G~~v~p~e~ 456 (456)
||.+|+||++|++|+|.|+
T Consensus 381 GR~~d~i~~~G~~v~~~ei 399 (487)
T PRK07638 381 GREKNMILFGGINIFPEEI 399 (487)
T ss_pred ecCCCeEEeCCEEECHHHH
Confidence 9999999999999999764
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-60 Score=473.87 Aligned_cols=401 Identities=27% Similarity=0.416 Sum_probs=344.0
Q ss_pred CHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHh
Q 012774 39 SAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSL 118 (456)
Q Consensus 39 ~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~~ 118 (456)
.+.+.+.+.++.+ |+++|++++ ++.+||+||.++++++|+.|++++|+.+|++|+++++|+++++++++||+++
T Consensus 3 ~~~~~~~~~a~~~----p~~~a~~~~--~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~ 76 (496)
T PRK06839 3 GIAYWIEKRAYLH----PDRIAIITE--EEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKV 76 (496)
T ss_pred cHHHHHHHHHHHC----CCCeEEEEC--CceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 5778889999988 999999987 8999999999999999999986479999999999999999999999999999
Q ss_pred CCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccC-----CeEEEEcCCchhhhhcccCCCccccccCCCCCC
Q 012774 119 GVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK-----HRTILIDSPEFDSMTMSWNSKHELDRAKVCQSD 193 (456)
Q Consensus 119 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (456)
|++++|+++..+.+++..+++.++++++++++.....+.... ..++.+. ++.+..... .........++
T Consensus 77 G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~ 150 (496)
T PRK06839 77 ECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISIT--SLKEIEDRK----IDNFVEKNESA 150 (496)
T ss_pred CcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccCcceEEEec--chHhhhccC----CCCCCCCCCCC
Confidence 999999999999999999999999999999987765544321 1222222 222222211 11122345688
Q ss_pred EEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhH-HHHHHHhHhcceEEEecCCCHHH
Q 012774 194 VAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKM 272 (456)
Q Consensus 194 ~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~ 272 (456)
+++++|||||||.||+|.++|+++..+.......+ ....++++++.+|++|..++ ..++.++..|+++++.+.++++.
T Consensus 151 ~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~ 229 (496)
T PRK06839 151 SFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAI-DLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTK 229 (496)
T ss_pred cEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHc-CCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEccCCCHHH
Confidence 99999999999999999999999876665555555 57788999999999999988 45578899999999988899999
Q ss_pred HHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccc
Q 012774 273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352 (456)
Q Consensus 273 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~ 352 (456)
+++.++++++|++.++|++++.+++.......+++++|.+++||+++++++.+.+++. ++++.+.||+||++..+...
T Consensus 230 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~~~~~~~ 307 (496)
T PRK06839 230 ALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDR--GFLFGQGFGMTETSPTVFML 307 (496)
T ss_pred HHHHHHhhCCeEEEehHHHHHHHHhCcccccCCCcccceEEECCCCCCHHHHHHHHHh--CCeeEeeccCCCCCcceEec
Confidence 9999999999999999999999998876666678999999999999999999999986 89999999999998765443
Q ss_pred cCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCC
Q 012774 353 VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDG 432 (456)
Q Consensus 353 ~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg 432 (456)
.........+++|+|+++++++|+| +++..++.|+.|||+|+|+.++.||+++++.+...+ .+|||+|||+|+++++|
T Consensus 308 ~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g 385 (496)
T PRK06839 308 SEEDARRKVGSIGKPVLFCDYELID-ENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLARVDEDG 385 (496)
T ss_pred ccccccccCCCCcccCCCceEEEEC-CCcCCCCCCCceEEEEECCCcchhhcCChHHHHHHH-cCCCeeecceEEEcCCC
Confidence 3323334568999999999999999 566679999999999999999999999999988777 58999999999999999
Q ss_pred cEEEecccccceeeCCeeecCCCC
Q 012774 433 FLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 433 ~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
++++.||.||+||++|++|+|.|+
T Consensus 386 ~~~~~GR~~d~i~~~G~~v~p~~i 409 (496)
T PRK06839 386 FVYIVGRKKEMIISGGENIYPLEV 409 (496)
T ss_pred cEEEeccccceEEECCEEECHHHH
Confidence 999999999999999999999764
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-59 Score=471.15 Aligned_cols=406 Identities=27% Similarity=0.398 Sum_probs=347.2
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
+|+.+++.+.++.+ |+++|+++. ++.+||.||.++++++|..|.+ .|+.+|++|+++++|+++++++++||++
T Consensus 2 ~~~~~~~~~~~~~~----~~~~a~~~~--~~~~ty~el~~~v~~~a~~L~~-~g~~~~~~v~i~~~~~~~~~~~~la~~~ 74 (497)
T PRK06145 2 FNLSASIAFHARRT----PDRAALVYR--DQEISYAEFHQRILQAAGMLHA-RGIGQGDVVALLMKNSAAFLELAFAASY 74 (497)
T ss_pred ccHHHHHHHHHHHC----CCceEEEEC--CcceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 68899999999998 999999987 7899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccCCeEEEEcCCc---hhhhhcccCCCccccccCCCCCCE
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPE---FDSMTMSWNSKHELDRAKVCQSDV 194 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 194 (456)
+|++++|+++..+.+++.++++.+++++++++++....... ....+.++... +..+... . ..........++++
T Consensus 75 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~ 151 (497)
T PRK06145 75 LGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL-ETPKIVIDAAAQADSRRLAQG-G-LEIPPQAAVAPTDL 151 (497)
T ss_pred cCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhhc-ccceEEecCcccchhHHHhcc-C-CCCCCCCCCCccce
Confidence 99999999999999999999999999999998776544321 12233333211 1111110 0 00111223567899
Q ss_pred EEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhH-HHHHHHhHhcceEEEecCCCHHHH
Q 012774 195 AAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMM 273 (456)
Q Consensus 195 a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~ 273 (456)
++++|||||||.||+|+++|+++..........+ +...+++++..+|++|.+++ ...+.++..|+++++.+.+++..+
T Consensus 152 a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~ 230 (497)
T PRK06145 152 VRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIAL-GLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEAV 230 (497)
T ss_pred EEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-CCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECCcCCHHHH
Confidence 9999999999999999999999987665555555 67888999999999999888 445778899999999999999999
Q ss_pred HHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCcccccccccccc
Q 012774 274 LKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353 (456)
Q Consensus 274 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~ 353 (456)
++.++++++|.+.++|+++..++........+++++|.+++||+++++++++.+.+.|++..+++.||+||++...+...
T Consensus 231 ~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~ 310 (497)
T PRK06145 231 LAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLME 310 (497)
T ss_pred HHHHHHhCCeEEEehHHHHHHHHcCCCccccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceecc
Confidence 99999999999999999999998876655667889999999999999999999999998899999999999987655432
Q ss_pred CCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCCc
Q 012774 354 GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGF 433 (456)
Q Consensus 354 ~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~ 433 (456)
........+++|+|+++++++++| ++++.++.|+.|||+++|++++.||+++++.+.+.| .++||+|||+|++++||+
T Consensus 311 ~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~ 388 (497)
T PRK06145 311 AGREIEKIGSTGRALAHVEIRIAD-GAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAF-YGDWFRSGDVGYLDEEGF 388 (497)
T ss_pred CccccccCCCcccCCCCceEEEEC-CCCCCCCCCCceEEEEECcchhhhhcCChHHHHHHH-hCCCeeccceEEEcCCCc
Confidence 222333567899999999999999 678889999999999999999999999999999888 589999999999999999
Q ss_pred EEEecccccceeeCCeeecCCCC
Q 012774 434 LFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 434 l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+++.||.||+||++|++|+|.|+
T Consensus 389 l~~~GR~~~~i~~~G~~v~~~~I 411 (497)
T PRK06145 389 LYLTDRKKDMIISGGENIASSEV 411 (497)
T ss_pred EEEeccccceEEeCCeEECHHHH
Confidence 99999999999999999999764
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-59 Score=475.87 Aligned_cols=409 Identities=27% Similarity=0.451 Sum_probs=337.7
Q ss_pred CCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
..|+.+.+.+.++.+ |+++|+++. ++.+||+||.++++++|+.|.+..|+++||+|+++++|++++++++|||+
T Consensus 23 ~~~~~~~l~~~a~~~----p~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~ 96 (562)
T PRK05677 23 YPNIQAVLKQSCQRF----ADKPAFSNL--GKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAM 96 (562)
T ss_pred cCcHHHHHHHHHHhC----CCCeeEEEC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 358999999999988 999999987 78999999999999999999863599999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhc----cCCeEEEEcC-Cc---------------------
Q 012774 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----LKHRTILIDS-PE--------------------- 170 (456)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~----~~~~~~~~~~-~~--------------------- 170 (456)
++|++++|+++..+.+++.++++.++++++|+++.....+.+ ...+.+.+.. .+
T Consensus 97 ~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (562)
T PRK05677 97 RAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMV 176 (562)
T ss_pred HcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhccCcceeEEecccccccchhhhhcccchhhccccc
Confidence 999999999999999999999999999999998765543321 1222222210 00
Q ss_pred ----------hhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCC-CC-CCCcEEE
Q 012774 171 ----------FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP-KR-VSPAVML 238 (456)
Q Consensus 171 ----------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~-~~-~~~~~~~ 238 (456)
+.+...... ..........++++++++|||||||.||+|+++|+++..........+. .. ...++++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~ 255 (562)
T PRK05677 177 PAYHLPQAVKFNDALAKGA-GQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILI 255 (562)
T ss_pred cccCCcccccHHHHHhcCC-CCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEE
Confidence 000000000 0011112345689999999999999999999999999876654443321 12 2447889
Q ss_pred EecchhhHhhH-HHHHHHhHhcceEEEec-CCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecC
Q 012774 239 FTMPYFHIYGL-FFCFRAAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGA 316 (456)
Q Consensus 239 ~~~p~~~~~g~-~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG 316 (456)
+.+|++|.+++ ..++.++..|++.++.+ .+++..+++.|+++++|+++++|+++..+..........++++|.+++||
T Consensus 256 ~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~v~~gG 335 (562)
T PRK05677 256 APLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGG 335 (562)
T ss_pred EcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceEEEEcC
Confidence 99999999998 45667777888766664 57899999999999999999999999999886554455678999999999
Q ss_pred CCCCHHHHHHHHHhCCCCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEec
Q 012774 317 APLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG 396 (456)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g 396 (456)
+++++++.+.|.+.+ ++++++.||+||++.++.... ....+.+++|+|+++++++|+| ++++.++.|+.|||+++|
T Consensus 336 ~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~--~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g 411 (562)
T PRK05677 336 MALQLATAERWKEVT-GCAICEGYGMTETSPVVSVNP--SQAIQVGTIGIPVPSTLCKVID-DDGNELPLGEVGELCVKG 411 (562)
T ss_pred ccCCHHHHHHHHHHc-CCCeeccCCccccCcceeecC--ccCCCCCccCccCCCCEEEEEC-CCCCCCCCCCCeEEEEec
Confidence 999999999999987 899999999999987665432 2233457899999999999999 568899999999999999
Q ss_pred CCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 397 PTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 397 ~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+.++.||+++++.+.+.|..+|||+|||+|++|+||++++.||.+|+||++|++|+|.|+
T Consensus 412 ~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~ei 471 (562)
T PRK05677 412 PQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNEL 471 (562)
T ss_pred CccchhhcCCchhhhhccCCCCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHH
Confidence 999999999999999999889999999999999999999999999999999999999874
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=469.89 Aligned_cols=397 Identities=26% Similarity=0.367 Sum_probs=342.5
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
+|+++.|.+++..+ ||++|+++. ++.+||+||.++++++|+.|.+ .|+++||+|+++++|+++++++++||++
T Consensus 2 ~~~~~~l~~~a~~~----p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~-~g~~~~~~v~i~~~~~~~~~~~~la~~~ 74 (483)
T PRK03640 2 ETMPNWLKQRAFLT----PDRTAIEFE--EKKVTFMELHEAVVSVAGKLAA-LGVKKGDRVALLMKNGMEMILVIHALQQ 74 (483)
T ss_pred CcHHHHHHHHHHhC----CCceEEEeC--CeeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 68999999999999 999999988 7899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccCCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEEE
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 197 (456)
+|++++|+++..+.+++..+++.++++.+++++........... ..++++....... .........++++++
T Consensus 75 ~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~a~i 146 (483)
T PRK03640 75 LGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGIS-------VKFAELMNGPKEE-AEIQEEFDLDEVATI 146 (483)
T ss_pred CCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhcc-------ccHHHHhhccccc-CCCCCCCCCCCeEEE
Confidence 99999999999999999999999999999998776554432110 1133322221111 112223466899999
Q ss_pred EcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecCCCHHHHHHHH
Q 012774 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAV 277 (456)
Q Consensus 198 ~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i 277 (456)
+|||||||.||+|.++|.++...+......+ +...+|++++.+|++|.+++..++.++..|+++++.+..++..+++.+
T Consensus 147 ~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i 225 (483)
T PRK03640 147 MYTSGTTGKPKGVIQTYGNHWWSAVGSALNL-GLTEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVEKFDAEKINKLL 225 (483)
T ss_pred EeCCCcCCCCcEEEEecHHHHHHHHHHHHhc-CCCcCcEEEEecCHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHH
Confidence 9999999999999999999988776666665 678999999999999999998888999999999999999999999999
Q ss_pred HHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccCCCC
Q 012774 278 EEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDE 357 (456)
Q Consensus 278 ~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~ 357 (456)
+++++|++.++|+++..|....... ....++|.+++||+++++.+.+.+++. ++++++.||+||++..+........
T Consensus 226 ~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~lr~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~ 302 (483)
T PRK03640 226 QTGGVTIISVVSTMLQRLLERLGEG-TYPSSFRCMLLGGGPAPKPLLEQCKEK--GIPVYQSYGMTETASQIVTLSPEDA 302 (483)
T ss_pred HHhCCcEEEeHHHHHHHHHhCcCcc-ccCCcceEEEEcCCCCCHHHHHHHHHh--CCCeeeeeccCcccccccccCcccc
Confidence 9999999999999999998764332 234689999999999999999998875 8999999999998765443222223
Q ss_pred CCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEe
Q 012774 358 CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIV 437 (456)
Q Consensus 358 ~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~ 437 (456)
....+++|+|+++++++|.+ + +++++.|+.|||+++|+.++.||+++++.+...| .+|||+|||++++++||++++.
T Consensus 303 ~~~~~~vG~p~~~~~~~i~~-~-~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~~~~~tGDl~~~~~~g~l~~~ 379 (483)
T PRK03640 303 LTKLGSAGKPLFPCELKIEK-D-GVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF-QDGWFKTGDIGYLDEEGFLYVL 379 (483)
T ss_pred cccCCCcccccCCcEEEEec-C-CCcCCCCCceEEEEECcchhhhhcCCHHHHHHHH-hcCCeeccceEEEcCCCCEEEe
Confidence 34568999999999999998 3 3789999999999999999999999999998888 5899999999999999999999
Q ss_pred cccccceeeCCeeecCCCC
Q 012774 438 DRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 438 GR~~d~ik~~G~~v~p~e~ 456 (456)
||+||++|++|++|+|.||
T Consensus 380 GR~~~~i~~~G~~v~~~~i 398 (483)
T PRK03640 380 DRRSDLIISGGENIYPAEI 398 (483)
T ss_pred ecccCeEEeCCEEECHHHH
Confidence 9999999999999999764
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-61 Score=429.51 Aligned_cols=406 Identities=25% Similarity=0.319 Sum_probs=352.3
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.++.+.|.+.|+++ ||++|++++ ++++||+||.++++++|..|++ +|+++||+|.+.++|..++++++||+++
T Consensus 28 ~~l~d~L~~~A~~~----pdriAv~d~--~~~~sY~eLdqr~d~LAa~l~~-lGi~~Gd~vlvQLpN~~ef~~~~FALlr 100 (542)
T COG1021 28 RTLTDILTDHAARY----PDRIAVIDG--ERRLSYAELDQRADRLAAGLRR-LGIKPGDTVLVQLPNVAEFYITFFALLR 100 (542)
T ss_pred CcHHHHHHHHHhhc----CCceEEecC--cccccHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCchHHHHHHHHHHHH
Confidence 68999999999999 999999998 8899999999999999999999 9999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchH--------HHHh-cc-CCeEEEEcCCc------hhhhhcccCCC
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--------HKLA-KL-KHRTILIDSPE------FDSMTMSWNSK 181 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--------~~~~-~~-~~~~~~~~~~~------~~~~~~~~~~~ 181 (456)
+|+.+|.--|.-...+|....+..+++.+|++.... ..+. +. ..+.+.+.... +..+.... .
T Consensus 101 lGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~~~~~~~~~~~a--~ 178 (542)
T COG1021 101 LGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHPSVLEAALCHPA--G 178 (542)
T ss_pred cCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCcchhhhhhhCcc--c
Confidence 999999988888899999999999999999875322 2222 22 23444443221 11111111 1
Q ss_pred ccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhH--HHHHHHhHhc
Q 012774 182 HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL--FFCFRAAALM 259 (456)
Q Consensus 182 ~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~--~~~~~~l~~G 259 (456)
...+..+.+.+++++++.+.||||.||.++.+|....-++....+.+ ++.+..++++.+|..|-+-+ -..++.++.|
T Consensus 179 ~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC-~~~~~tvyL~~LP~AHNfplssPG~LGv~~ag 257 (542)
T COG1021 179 LFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEIC-GFDQQTVYLCALPAAHNFPLSSPGALGVFLAG 257 (542)
T ss_pred cCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhh-CcCccceEEEecccccCCCCCCcchhheeeec
Confidence 11223446778899999999999999999999999988888888888 89999999999999998887 5688999999
Q ss_pred ceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEec
Q 012774 260 ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (456)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~ 339 (456)
+++++.++.+++..+.+|+++++|+..++|.+...|++.......+++|||.+-+||+.+++++.++....+ ++.+.+.
T Consensus 258 G~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~LsSLrllQVGGarl~~~~Arrv~~~l-gC~LQQV 336 (542)
T COG1021 258 GTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVL-GCQLQQV 336 (542)
T ss_pred cEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCCchheeEEeecCcccCHHHHhhchhhh-CchHHHH
Confidence 999999999999999999999999999999999999999998889999999999999999999999999999 9999999
Q ss_pred cCccccccccccccCCCCCCCCCcccccc-CCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCC
Q 012774 340 YGLTESTAGVFRTVGPDECRRWGSTGRLS-AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG 418 (456)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g 418 (456)
|||.|.-...+.. ++....-..+-|+|+ |.-+++|+| .+|+++++|++|+|..+||.-.+|||+.|+.++..|+.+|
T Consensus 337 FGMAEGLvnyTRL-DDp~E~i~~TQGrPlsP~DEvrvvD-~dg~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~G 414 (542)
T COG1021 337 FGMAEGLVNYTRL-DDPPEIIIHTQGRPLSPDDEVRVVD-ADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADG 414 (542)
T ss_pred hhhhhhhhccccc-CCchHheeecCCCcCCCcceeEEec-CCCCCCCCCCcceeeecCCeeeeeeccCchhhhhccCcCC
Confidence 9999954333332 222223346789999 677999999 8899999999999999999999999999999999999999
Q ss_pred eeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 419 WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 419 ~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+|+|||++++|+||++.+.||.||+|+.+|+||...|+
T Consensus 415 FYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEv 452 (542)
T COG1021 415 FYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEV 452 (542)
T ss_pred ceecCceeEecCCceEEEEeeehhhhccccchhhHHHH
Confidence 99999999999999999999999999999999987653
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-60 Score=489.96 Aligned_cols=394 Identities=20% Similarity=0.251 Sum_probs=330.0
Q ss_pred CHHHHhhhcccC--CCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 39 SAVDYVSSLRAT--LPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 39 ~~~~~l~~~~~~--~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
|+.+++.+.+.. + ||++|+++. +.+||+||.++++++|+.|.+ .|+++||+|+|+++|+++++++++||+
T Consensus 5 ~~~~~~~~~a~~~~~----pd~~a~~~~---~~~Ty~eL~~~~~~lA~~L~~-~g~~~g~~V~i~~~~~~~~~~~~la~~ 76 (705)
T PRK06060 5 NLAGLLAEQASEAGW----YDRPAFYAA---DVVTHGQIHDGAARLGEVLRN-RGLSSGDRVLLCLPDSPDLVQLLLACL 76 (705)
T ss_pred CHHHHHHHHHhhccC----CCceEEEec---CceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 788999888775 5 899999864 479999999999999999998 899999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccCCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEE
Q 012774 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (456)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 196 (456)
++|++++|++|.++.+++.+++++++++++|++......+.... ++ . ...+................++++++
T Consensus 77 ~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~--~---~~~~~~~~~~~~~~~~~~~~~~~~a~ 149 (705)
T PRK06060 77 ARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPSR--VA--E---AAELMSEAARVAPGGYEPMGGDALAY 149 (705)
T ss_pred HhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhcccc--cc--h---hhhhhhhccccCCCCCCCCCCCCeEE
Confidence 99999999999999999999999999999999876655443211 11 0 11111110000011112345688999
Q ss_pred EEcCCCCCCCCchhcccHHHHHHHHHHhc-cCCCCCCCCcEEEEecchhhHhhH-HHHHHHhHhcceEEEec-CCCHHHH
Q 012774 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSF-ASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQ-RFDLKMM 273 (456)
Q Consensus 197 i~~TSGtTG~PK~V~~th~~l~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~~~~~-~~~~~~~ 273 (456)
++|||||||.||+|+++|+++...+.... ..+ .....+++++..|++|..++ ..++.++..|+++++.+ .+++..+
T Consensus 150 il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~ 228 (705)
T PRK06060 150 ATYTSGTTGPPKAAIHRHADPLTFVDAMCRKAL-RLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEAA 228 (705)
T ss_pred EEECCCCCCCCcEEEEccccHHHHHHHHHHHhh-CCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCCCCCHHHH
Confidence 99999999999999999999988765543 233 56788999999999998887 56778899999999886 5788999
Q ss_pred HHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCcccccccccccc
Q 012774 274 LKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353 (456)
Q Consensus 274 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~ 353 (456)
+..++++++|+++++|+++..+++... ...++++|.+++||+++++++.+++.+.+++.++++.||+||++..+....
T Consensus 229 ~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~ 306 (705)
T PRK06060 229 AILSARFGPSVLYGVPNFFARVIDSCS--PDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNR 306 (705)
T ss_pred HHHHHhcCCeEEeeHHHHHHHHHHhcc--cccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEecc
Confidence 999999999999999999999987543 235789999999999999999999999997899999999999986544321
Q ss_pred CCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCCc
Q 012774 354 GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGF 433 (456)
Q Consensus 354 ~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~ 433 (456)
......+++|+|+++++++|+| +++++++.|+.|||+|+|+.++.||+++++.+. ..+|||+|||+|++++||+
T Consensus 307 --~~~~~~~~iG~p~~~~~v~i~d-~~g~~~~~g~~GEl~i~g~~v~~GY~~~~~~~~---~~~~~~~TGDl~~~~~dG~ 380 (705)
T PRK06060 307 --VDEWRLGTLGRVLPPYEIRVVA-PDGTTAGPGVEGDLWVRGPAIAKGYWNRPDSPV---ANEGWLDTRDRVCIDSDGW 380 (705)
T ss_pred --CCCCCcCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEccchhhhhhhCCCcccc---cCCCcEECCeeEEECCCce
Confidence 1223457899999999999999 678899999999999999999999999988653 3579999999999999999
Q ss_pred EEEecccccceeeCCeeecCCCC
Q 012774 434 LFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 434 l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+++.||.||+||++|++|+|.||
T Consensus 381 l~~~GR~dd~ik~~G~~v~~~eI 403 (705)
T PRK06060 381 VTYRCRADDTEVIGGVNVDPREV 403 (705)
T ss_pred EEEecccCceEEECCEEECHHHH
Confidence 99999999999999999999874
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-59 Score=474.36 Aligned_cols=410 Identities=22% Similarity=0.287 Sum_probs=330.5
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.|+.+.+.+.++++ |+++|+++.+.++.+||+||.++++++|+.|.+ .|+++||+|+++++|+++++++++||++
T Consensus 14 ~~~~~~l~~~a~~~----p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~-~g~~~g~~V~i~~~~~~e~~~~~lA~~~ 88 (540)
T PRK05857 14 STVLDRVFEQARQQ----PEAIALRRCDGTSALRYRELVAEVGGLAADLRA-QSVSRGSRVLVISDNGPETYLSVLACAK 88 (540)
T ss_pred cchHHHHHHHHhhC----CCcEEEeecCCCceeeHHHHHHHHHHHHHHHHH-hCcCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 58999999999999 999999875446789999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-----CCeEEEEcCCchhhh-hcccCCCccccccCCCC
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KHRTILIDSPEFDSM-TMSWNSKHELDRAKVCQ 191 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 191 (456)
+|++++|+++..+.+++.++++.++++++|+++........+ ....+.++....... .................
T Consensus 89 ~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (540)
T PRK05857 89 LGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIPVIAVDIAAVTRESEHSLDAASLAGNADQGS 168 (540)
T ss_pred cCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccceeEeecccccccccccccccccccccCCCC
Confidence 999999999999999999999999999999987653221111 122333322111000 00000000111233466
Q ss_pred CCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhcc---CCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecCC
Q 012774 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA---SSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRF 268 (456)
Q Consensus 192 ~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~ 268 (456)
+++++++|||||||.||+|.++|+++.++...... .......++++++.+|++|..++...+.++..|+++++ ...
T Consensus 169 ~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~~~~~~l~~G~~~v~-~~~ 247 (540)
T PRK05857 169 EDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLWWILTCLMHGGLCVT-GGE 247 (540)
T ss_pred CCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHHHHHHHhhcceeEEe-cCC
Confidence 89999999999999999999999999776543221 11134567899999999999999878889999998765 456
Q ss_pred CHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccc
Q 012774 269 DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG 348 (456)
Q Consensus 269 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~ 348 (456)
++..+++.|+++++|+++++|+++..|.+.......+++++|.+++||++++....+ +.+.+ ++++++.||+||++..
T Consensus 248 ~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~-~~~~~-g~~i~~~YG~TE~~~~ 325 (540)
T PRK05857 248 NTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADVR-FIEAT-GVRTAQVYGLSETGCT 325 (540)
T ss_pred ChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCccceEEEEcCccCCchhHH-HHHHh-CCeeecccCCCcCCce
Confidence 889999999999999999999999999887665666789999999999999887765 45555 8999999999999864
Q ss_pred cccccCCCC---CCCCCccccccCCcEEEEEcCCCCCCC-----CCCCcceEEEecCCcccccCCCccccccccCCCCee
Q 012774 349 VFRTVGPDE---CRRWGSTGRLSAGLEAKIVDPETGDSL-----PPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWM 420 (456)
Q Consensus 349 ~~~~~~~~~---~~~~~~~G~~~~~~~~~i~d~~~~~~~-----~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~ 420 (456)
......... ..+.+++|+|++|++++|+|++....+ +.|+.|||+++|+.++.||+++++.+.+.| .+|||
T Consensus 326 ~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~-~~g~~ 404 (540)
T PRK05857 326 ALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDGWV 404 (540)
T ss_pred eeecccccccccccccCCcCcccCCcEEEEECccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhc-CCCce
Confidence 433221111 124578999999999999995433333 357899999999999999999999999888 58999
Q ss_pred eccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 421 RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 421 ~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+|||+|++|+||++++.||.||+||++|++|+|.|+
T Consensus 405 ~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eI 440 (540)
T PRK05857 405 NTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEV 440 (540)
T ss_pred eccceEEEcCCceEEEeccccccEecCCEEECHHHH
Confidence 999999999999999999999999999999999874
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-59 Score=480.61 Aligned_cols=409 Identities=23% Similarity=0.276 Sum_probs=324.8
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECC---C--C--ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSV---T--G--LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI 110 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~---~--~--~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~ 110 (456)
.|+++++.+.++++ |+++|+.... . + ..+||+|+.++++++|+.|.+ .|+++||+|+|+++|+++|++
T Consensus 42 ~t~~~~~~~~~~~~----p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-~Gv~~gd~V~i~~~n~~ew~~ 116 (660)
T PLN02430 42 TTAWDIFSKSVEKY----PDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRA-SGAEPGSRVGIYGSNCPQWIV 116 (660)
T ss_pred CCHHHHHHHHHHhC----CCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHH
Confidence 58999999999999 9999986421 1 1 357999999999999999999 899999999999999999999
Q ss_pred HHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHH-HHhc----c-CCe-EEEEcCC--------------
Q 012774 111 LYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH-KLAK----L-KHR-TILIDSP-------------- 169 (456)
Q Consensus 111 ~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-~~~~----~-~~~-~~~~~~~-------------- 169 (456)
+++||+++|++++|+++.++++++.+++++++++++|+++.... .+.. . ..+ ++.++..
T Consensus 117 ~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 196 (660)
T PLN02430 117 AMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVK 196 (660)
T ss_pred HHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcE
Confidence 99999999999999999999999999999999999999865332 2221 1 122 3333321
Q ss_pred --chhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccC---C-CCCCCCcEEEEecch
Q 012774 170 --EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFAS---S-PKRVSPAVMLFTMPY 243 (456)
Q Consensus 170 --~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~---~-~~~~~~~~~~~~~p~ 243 (456)
.++++....... ........++++++++|||||||.||||++||+++...+...... + .....+|++++++|+
T Consensus 197 ~~~~~~~~~~~~~~-~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl 275 (660)
T PLN02430 197 TYSWIDFLHMGKEN-PSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPL 275 (660)
T ss_pred EEEHHHHHHhhccC-CCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcH
Confidence 122222211100 111123457899999999999999999999999998877654321 1 135678999999999
Q ss_pred hhHhhHHHHHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCC-----------------------
Q 012774 244 FHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS----------------------- 300 (456)
Q Consensus 244 ~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------- 300 (456)
+|.++....+.++..|+++.+... ++..+++.|++.++|++.++|.+++.+.+...
T Consensus 276 ~H~~~~~~~~~~l~~G~~i~~~~~-~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 354 (660)
T PLN02430 276 AHILDRMIEEYFFRKGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLA 354 (660)
T ss_pred HHHHHHHHHHHHHHcCCEEEEeCC-ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 999998666667889999887654 78899999999999999999999987764210
Q ss_pred --------CCCC---C----------C-CCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccCCCCC
Q 012774 301 --------TDGY---D----------L-SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDEC 358 (456)
Q Consensus 301 --------~~~~---~----------l-~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~ 358 (456)
.... + + +++|.+++||+++++++.+.++ .+.+..+++.||+||+++.++... ....
T Consensus 355 ~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~-~~~~~~i~~~YG~TE~~~~~~~~~-~~~~ 432 (660)
T PLN02430 355 WMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLR-VTSCAFVVQGYGLTETLGPTTLGF-PDEM 432 (660)
T ss_pred HHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHH-HhcCCCeeeecchhhhhhceEeec-cccC
Confidence 0000 0 1 5899999999999999866555 443578999999999987665432 2223
Q ss_pred CCCCccccccCCcEEEEEcC-CCC-CCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEE
Q 012774 359 RRWGSTGRLSAGLEAKIVDP-ETG-DSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFI 436 (456)
Q Consensus 359 ~~~~~~G~~~~~~~~~i~d~-~~~-~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~ 436 (456)
...+++|+|.++++++|+|. +.+ .+++.+..|||+|+|++++.||+++++.|.+.| .+|||+|||+|++|+||+|+|
T Consensus 433 ~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~-~dGw~~TGDig~~d~dG~l~i 511 (660)
T PLN02430 433 CMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-KDGWFHTGDIGEILPNGVLKI 511 (660)
T ss_pred CCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHHhhhhh-hccceeccceEEECCCCcEEE
Confidence 34689999999999999873 333 455666789999999999999999999999998 699999999999999999999
Q ss_pred ecccccceee-CCeeecCCCC
Q 012774 437 VDRLKDLIKY-KGYQVLPLLN 456 (456)
Q Consensus 437 ~GR~~d~ik~-~G~~v~p~e~ 456 (456)
.||+||+||+ +|++|+|.||
T Consensus 512 ~gR~kd~ik~~~G~~V~p~~I 532 (660)
T PLN02430 512 IDRKKNLIKLSQGEYVALEYL 532 (660)
T ss_pred EEcccccEEcCCCcEEchHHH
Confidence 9999999997 5999999764
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-59 Score=476.83 Aligned_cols=402 Identities=23% Similarity=0.286 Sum_probs=322.9
Q ss_pred CCCHHHHhhhcccCCCCCCCCCcEEEECC---CCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHH
Q 012774 37 PISAVDYVSSLRATLPWRDDDTVALINSV---TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113 (456)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~A~~~~~---~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~l 113 (456)
..++.++|.+.++++ |+++|+++.+ ..+++||+||.++++++|+.|.+ .|+++||+|+++++|+++++++++
T Consensus 38 ~~~l~~~l~~~a~~~----p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~-~Gv~~gd~Vai~~~n~~e~~~~~l 112 (614)
T PRK08180 38 PRRLTDRLVHWAQEA----PDRVFLAERGADGGWRRLTYAEALERVRAIAQALLD-RGLSAERPLMILSGNSIEHALLAL 112 (614)
T ss_pred CccHHHHHHHHHHHC----CCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEecCCCHHHHHHHH
Confidence 369999999999999 9999998742 13689999999999999999998 899999999999999999999999
Q ss_pred HHHHhCCeEecCCCCCC-----HHHHHHHhhhcCCeEEEEccc--hHHHHhc---cCCeEEEEcC-------Cchhhhhc
Q 012774 114 SLLSLGVIISPANPVNT-----ESEISRQIQLSNPVIAFATSS--VVHKLAK---LKHRTILIDS-------PEFDSMTM 176 (456)
Q Consensus 114 a~~~~G~~~v~l~~~~~-----~~~l~~~l~~~~~~~vi~~~~--~~~~~~~---~~~~~~~~~~-------~~~~~~~~ 176 (456)
||+++|++++|+++.++ .+++.+++++++++++|+++. ....+.. ....++..+. ..+.++..
T Consensus 113 A~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 192 (614)
T PRK08180 113 AAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVPADVEVVAVRGAVPGRAATPFAALLA 192 (614)
T ss_pred HHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhccCCceEEEecCCCCCcccccHHHHhc
Confidence 99999999999999988 799999999999999999854 2222221 1223333321 22333332
Q ss_pred ccCCC-ccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCC-CCCCcEEEEecchhhHhhH-HHHH
Q 012774 177 SWNSK-HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK-RVSPAVMLFTMPYFHIYGL-FFCF 253 (456)
Q Consensus 177 ~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~g~-~~~~ 253 (456)
..... .........++++++++|||||||.||+|++||+++..+.......+.. ....+++++++|++|.+++ ..++
T Consensus 193 ~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~ 272 (614)
T PRK08180 193 TPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNLG 272 (614)
T ss_pred cccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHhhHHHHHH
Confidence 21100 0111123457899999999999999999999999998887766555521 1256899999999999987 5667
Q ss_pred HHhHhcceEEEec-CCCH---HHHHHHHHHhcceeEEecHHHHHHHhcCCCC----CCCCCCCceEEEecCCCCCHHHHH
Q 012774 254 RAAALMETAVVMQ-RFDL---KMMLKAVEEFRVTHAAVTPPIVVAMSKGGST----DGYDLSSLETVACGAAPLGKDTIM 325 (456)
Q Consensus 254 ~~l~~G~~~~~~~-~~~~---~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----~~~~l~~lr~v~~gG~~~~~~~~~ 325 (456)
.++..|+++++.+ .+++ ..+++.++++++|+++++|+++..|++.... ....++++|.+++||+++++++.+
T Consensus 273 ~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~gGa~l~~~~~~ 352 (614)
T PRK08180 273 IVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQDVWD 352 (614)
T ss_pred HHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEEccCCCCHHHHH
Confidence 8899999998876 3443 5678889999999999999999988764322 223578999999999999999999
Q ss_pred HHHHh----C-CCCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcc
Q 012774 326 AFASK----F-PKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIM 400 (456)
Q Consensus 326 ~~~~~----~-~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~ 400 (456)
.+++. + .+.++++.||+||++.+++.... .....+++|+|++|++++|+|+ +..|||+++|++++
T Consensus 353 ~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~--~~~~~~svG~p~pg~~v~i~d~--------~~~GEi~vrg~~v~ 422 (614)
T PRK08180 353 RLDRVAEATCGERIRMMTGLGMTETAPSATFTTG--PLSRAGNIGLPAPGCEVKLVPV--------GGKLEVRVKGPNVT 422 (614)
T ss_pred HHHHHHHhhcCCCceeeeeecccccCCceEeccc--ccCCCCcccCccCCcEEEEecC--------CCCcEEEEecCccc
Confidence 99875 2 24789999999999876554222 2345689999999999999983 34599999999999
Q ss_pred cccCCCccccccccCCCCeeeccceEEE----ccCCcEEEecccccceee-CCeeecC
Q 012774 401 KGYVGEPEVTSATLLPDGWMRTGDLCYI----DEDGFLFIVDRLKDLIKY-KGYQVLP 453 (456)
Q Consensus 401 ~gy~~~~~~~~~~~~~~g~~~TGDl~~~----~~dg~l~~~GR~~d~ik~-~G~~v~p 453 (456)
.||+++|+.+.+.|+.+|||+|||+|++ |+||+++|.||+||+||+ +|++|+|
T Consensus 423 ~GY~~~p~~t~~~~~~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~ 480 (614)
T PRK08180 423 PGYWRAPELTAEAFDEEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSV 480 (614)
T ss_pred hhhcCChhHhHhhcccCCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecc
Confidence 9999999999999978999999999999 468999999999998885 6988774
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-59 Score=469.64 Aligned_cols=407 Identities=28% Similarity=0.425 Sum_probs=351.8
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.++.+.|.+.+..+ |+++|+++. ++++||+||.+++.++|+.|.+ .|+++||+|+++++|+++++++++||++
T Consensus 5 ~~i~~~l~~~~~~~----~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~-~gv~~g~~V~l~~~~~~~~~~~~la~~~ 77 (513)
T PRK07656 5 MTLPELLARAARRF----GDKEAYVFG--DQRLTYAELNARVRRAAAALAA-LGIGKGDRVAIWAPNSPHWVIAALGALK 77 (513)
T ss_pred ccHHHHHHHHHHHC----CCCeEEEeC--CCceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHh
Confidence 68999999999999 999999997 8899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-----CCe-EEEEcCC----------chhhhhcccCCC
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KHR-TILIDSP----------EFDSMTMSWNSK 181 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~-~~~~~~~----------~~~~~~~~~~~~ 181 (456)
+|++++|+++..+.+.+.++++.++++++++++......... ... ++..... .|.++......
T Consensus 78 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 156 (513)
T PRK07656 78 AGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMKTFTDFLAAGDP- 156 (513)
T ss_pred cCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCcccccCccccccHHHHHhcCCC-
Confidence 999999999999999999999999999999988766544321 111 2222211 22333222111
Q ss_pred ccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhH-HHHHHHhHhcc
Q 012774 182 HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALME 260 (456)
Q Consensus 182 ~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~ 260 (456)
.........+++++++|||||||.||+|.++|.++...+......+ ....++++++.+|++|.+++ ..++.++..|+
T Consensus 157 -~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~ 234 (513)
T PRK07656 157 -AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-GLTEGDRYLAANPFFHVFGYKAGVNAPLMRGA 234 (513)
T ss_pred -CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh-CCCCCCeEEEccchHHHHHHHHHHHHHHHcCc
Confidence 1122345678899999999999999999999999988887766666 67889999999999999998 55788999999
Q ss_pred eEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCC-ceEec
Q 012774 261 TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKV-VLVQA 339 (456)
Q Consensus 261 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~-~i~~~ 339 (456)
++++.+.++++.+++.|+++++|++.++|+++..+.+........++++|.+++||+++++++++.+++.+ +. .+++.
T Consensus 235 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~-~~~~~~~~ 313 (513)
T PRK07656 235 TILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESEL-GVDIVLTG 313 (513)
T ss_pred eEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCccceeeEEecCCCCCHHHHHHHHHHc-CCCceEeE
Confidence 99998888999999999999999999999999999998776666789999999999999999999999998 55 89999
Q ss_pred cCccccccccccccCCCC-CCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCC
Q 012774 340 YGLTESTAGVFRTVGPDE-CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG 418 (456)
Q Consensus 340 yG~tE~~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g 418 (456)
||+||+++++..+..... ....+++|.|+++++++|+| +++.+++.|+.|||+++|+.++.||++++..+...+..+|
T Consensus 314 YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~ 392 (513)
T PRK07656 314 YGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVN-ELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADG 392 (513)
T ss_pred EccccCCCceeecCccccccccCCCccccCCCcEEEEEC-CCCCCCCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCC
Confidence 999999877665432211 12257899999999999999 6789999999999999999999999999999988886689
Q ss_pred eeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 419 WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 419 ~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
||+|||+|+++++|.+++.||.||+||++|++|+|.|+
T Consensus 393 ~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~i 430 (513)
T PRK07656 393 WLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEV 430 (513)
T ss_pred ceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHH
Confidence 99999999999999999999999999999999999764
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-59 Score=472.78 Aligned_cols=408 Identities=24% Similarity=0.362 Sum_probs=339.6
Q ss_pred CCCHHH-Hhhhccc-CCCCCCCCCcEEEECC--CCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHH
Q 012774 37 PISAVD-YVSSLRA-TLPWRDDDTVALINSV--TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILY 112 (456)
Q Consensus 37 ~~~~~~-~l~~~~~-~~~~~~p~~~A~~~~~--~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~ 112 (456)
.+|+.. .+.+.++ .+ |+++|+++.+ ..+++||+||.++++++|..|.+ .|+++||+|+++++|++++++++
T Consensus 41 ~~~~~~~~~~~~~~~~~----~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~-~gv~~gd~V~i~~~n~~~~~~~~ 115 (570)
T PRK04319 41 KVNIAYEAIDRHADGGR----KDKVALRYLDASRKEKYTYKELKELSNKFANVLKE-LGVEKGDRVFIFMPRIPELYFAL 115 (570)
T ss_pred ceeHHHHHHHHhhccCC----CCceEEEEECCCCceeecHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHH
Confidence 356664 5555555 35 8999998742 34789999999999999999998 99999999999999999999999
Q ss_pred HHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhc--c-CC-eEEEEcCC--------chhhhhcccCC
Q 012774 113 FSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK--L-KH-RTILIDSP--------EFDSMTMSWNS 180 (456)
Q Consensus 113 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~--~-~~-~~~~~~~~--------~~~~~~~~~~~ 180 (456)
+||+++|++++|+++.++++++.++++.++++++++++........ . .. .++.++.. ++.++......
T Consensus 116 la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (570)
T PRK04319 116 LGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPADDLPSLKHVLLVGEDVEEGPGTLDFNALMEQASD 195 (570)
T ss_pred HHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccchhcCCCceEEEEECCCcCCCcCccCHHHHHhhcCC
Confidence 9999999999999999999999999999999999998776544321 1 11 23333321 22222221111
Q ss_pred CccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhH-HHHHHHhHhc
Q 012774 181 KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALM 259 (456)
Q Consensus 181 ~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G 259 (456)
........++++++++|||||||.||+|+++|+++..+.......+ ....+|++++..|++|..+. ..++.++..|
T Consensus 196 --~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G 272 (570)
T PRK04319 196 --EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVL-DLHEDDVYWCTADPGWVTGTSYGIFAPWLNG 272 (570)
T ss_pred --cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhc-CCCCCceEEecCChHHhhCchHHHHHHHhcC
Confidence 1122234568899999999999999999999999988877766666 67788999999999998887 6688999999
Q ss_pred ceEEEec-CCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCC--CCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCce
Q 012774 260 ETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVL 336 (456)
Q Consensus 260 ~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i 336 (456)
+++++.. .+++..+++.|+++++|+++++|++++.|.+... ....+++++|.+++||+++++++.+++++.+ +.++
T Consensus 273 ~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~i 351 (570)
T PRK04319 273 ATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGMKVF-GLPI 351 (570)
T ss_pred ceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEcccCCCHHHHHHHHHHh-CCCe
Confidence 9988875 6899999999999999999999999999987543 2345688999999999999999999999988 7899
Q ss_pred EeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEec--CCcccccCCCcccccccc
Q 012774 337 VQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG--PTIMKGYVGEPEVTSATL 414 (456)
Q Consensus 337 ~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g--~~~~~gy~~~~~~~~~~~ 414 (456)
++.||+||++..+.... .......+++|+|+|+++++|+| +++..+++|+.|||+++| +.++.||+++++.+.+.|
T Consensus 352 ~~~YG~tE~~~~~~~~~-~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~ 429 (570)
T PRK04319 352 HDNWWMTETGGIMIANY-PAMDIKPGSMGKPLPGIEAAIVD-DQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYF 429 (570)
T ss_pred EeceeecccCCEEEecC-CCCCCCCCcCcCCCCCCEEEEEC-CCCCCCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhh
Confidence 99999999987654322 22234568899999999999999 678888999999999997 889999999999999888
Q ss_pred CCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 415 LPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 415 ~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
. +|||+|||+|++++||++++.||.||+||++|++|+|.|+
T Consensus 430 ~-~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eI 470 (570)
T PRK04319 430 A-GDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEV 470 (570)
T ss_pred c-CCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHH
Confidence 4 8999999999999999999999999999999999999874
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=468.69 Aligned_cols=409 Identities=26% Similarity=0.393 Sum_probs=349.0
Q ss_pred CCCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHH
Q 012774 36 APISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL 115 (456)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~ 115 (456)
..+|+.+.+...+..+ |+++|+++. ++.+||.||.++++++|..|.+ .|+++|++|+++++|+++++++++||
T Consensus 15 ~~~n~~~~~~~~a~~~----~~~~a~~~~--~~~~ty~~l~~~~~~~a~~L~~-~g~~~g~~V~i~~~~~~~~~~~~~a~ 87 (542)
T PRK07786 15 RRQNWVNQLARHALMQ----PDAPALRFL--GNTTTWRELDDRVAALAGALSR-RGVGFGDRVLILMLNRTEFVESVLAA 87 (542)
T ss_pred cccCHHHHHHHHHHHC----CCCeEEEeC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 3479999999999999 999999987 7899999999999999999998 89999999999999999999999999
Q ss_pred HHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-----CC-eEEEEcC------CchhhhhcccCCCcc
Q 012774 116 LSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KH-RTILIDS------PEFDSMTMSWNSKHE 183 (456)
Q Consensus 116 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~-~~~~~~~------~~~~~~~~~~~~~~~ 183 (456)
+++|++++|+++..+.+++.++++.++++++++++.....+... .. .++..+. ..+.++...... .
T Consensus 88 ~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 165 (542)
T PRK07786 88 NMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSDDSVLGYEDLLAEAGP--A 165 (542)
T ss_pred HHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCCcccccCHHHHhhccCC--C
Confidence 99999999999999999999999999999999998766554321 11 1222221 223333222111 1
Q ss_pred ccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEE
Q 012774 184 LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAV 263 (456)
Q Consensus 184 ~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~ 263 (456)
........+++++++|||||||.||+|.++|+++...+......+.....++++++..|++|.+|+..++.++..|++++
T Consensus 166 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~v 245 (542)
T PRK07786 166 HAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLLGAPTV 245 (542)
T ss_pred CCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHHHHHHHHHccCEEE
Confidence 12223455789999999999999999999999998888776666522267899999999999999988899999999999
Q ss_pred Eec--CCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccC
Q 012774 264 VMQ--RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYG 341 (456)
Q Consensus 264 ~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG 341 (456)
+.+ .+++..+++.|+++++|+++++|+++..++......... .++|.+++||+++++++++.+++.+++.++++.||
T Consensus 246 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~-~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG 324 (542)
T PRK07786 246 IYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRD-LALRVLSWGAAPASDTLLRQMAATFPEAQILAAFG 324 (542)
T ss_pred EccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCccC-cceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeec
Confidence 865 579999999999999999999999999998875443333 36999999999999999999999999999999999
Q ss_pred ccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeee
Q 012774 342 LTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMR 421 (456)
Q Consensus 342 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~ 421 (456)
+||++.+.+...........+++|+|++++.++|+| ++++.++.|+.|||+++|+.++.||+++++.+...| .+|||+
T Consensus 325 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f-~~~~~~ 402 (542)
T PRK07786 325 QTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVD-ENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAF-AGGWFH 402 (542)
T ss_pred ccccccceEecCcccccccCCCccccCCCceEEEEC-CCCCCCcCCCceEEEEEChhhhhhhcCCHHHHHHHh-hCCccc
Confidence 999987665433333334567899999999999999 678899999999999999999999999999999888 589999
Q ss_pred ccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 422 TGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 422 TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|||++++++||++++.||.||+||++|++|+|.|+
T Consensus 403 TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~ei 437 (542)
T PRK07786 403 SGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEV 437 (542)
T ss_pred ccceEEEcCCceEEEEecccceEEeCCEEECHHHH
Confidence 99999999999999999999999999999999874
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=471.15 Aligned_cols=413 Identities=30% Similarity=0.407 Sum_probs=347.7
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.|+.+.|.+.++++ |+++|+++...++++||+||.++++++|..|.+ .|+++||+|+++++|+++++++++||++
T Consensus 16 ~~l~~~l~~~~~~~----~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~-~gi~~g~~V~i~~~~~~~~~~~~la~~~ 90 (559)
T PRK08315 16 QTIGQLLDRTAARY----PDREALVYRDQGLRWTYREFNEEVDALAKGLLA-LGIEKGDRVGIWAPNVPEWVLTQFATAK 90 (559)
T ss_pred ccHHHHHHHHHHHC----CCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHH
Confidence 68999999999999 999999986557899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHH-----HHh----cc---------------CCeEEEEcC-----
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH-----KLA----KL---------------KHRTILIDS----- 168 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~----~~---------------~~~~~~~~~----- 168 (456)
+|++++|+++..+.+++.++++.++++++++++.... .+. ++ ...++..+.
T Consensus 91 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (559)
T PRK08315 91 IGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEKHPG 170 (559)
T ss_pred hCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecccCCcc
Confidence 9999999999999999999999999999999865321 111 00 011222221
Q ss_pred -CchhhhhcccC----CCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecch
Q 012774 169 -PEFDSMTMSWN----SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPY 243 (456)
Q Consensus 169 -~~~~~~~~~~~----~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~ 243 (456)
..+.++..... ............+++++++|||||||.||+|.++|+++..++......+ ....+++++..+|+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~~~~~p~ 249 (559)
T PRK08315 171 MLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAM-KLTEEDRLCIPVPL 249 (559)
T ss_pred cccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhc-CCCCCceEEEecCc
Confidence 12333222110 0001112234568899999999999999999999999988887777666 67889999999999
Q ss_pred hhHhhH-HHHHHHhHhcceEEEe-cCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCH
Q 012774 244 FHIYGL-FFCFRAAALMETAVVM-QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGK 321 (456)
Q Consensus 244 ~~~~g~-~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~ 321 (456)
+|.+++ ..++.++..|+++++. ..+++..+++.++++++|+++++|+++..++.........++++|.+++||++++.
T Consensus 250 ~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~lr~~~~~G~~~~~ 329 (559)
T PRK08315 250 YHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSSLRTGIMAGSPCPI 329 (559)
T ss_pred HHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCchhhheeEecCCCCCH
Confidence 999988 5678889999998854 56899999999999999999999999998888766566678999999999999999
Q ss_pred HHHHHHHHhCCCCceEeccCccccccccccccCCC-CCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcc
Q 012774 322 DTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPD-ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIM 400 (456)
Q Consensus 322 ~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~ 400 (456)
++++.+.+.++..++++.||+||++.+++...... ...+..++|+|++++.++|+|+++++.++.|+.|||+|+|+.++
T Consensus 330 ~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~ 409 (559)
T PRK08315 330 EVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSVM 409 (559)
T ss_pred HHHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCCceEEEEECchhh
Confidence 99999999986667999999999987655432221 22346789999999999999977799999999999999999999
Q ss_pred cccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 401 KGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 401 ~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
.||++++..+...+..++||+|||+|++++||+++++||.||+||++|++|+|.|+
T Consensus 410 ~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eI 465 (559)
T PRK08315 410 KGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREI 465 (559)
T ss_pred hhhcCChhHHhhcCCCCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHH
Confidence 99999999998888778999999999999999999999999999999999999774
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-58 Score=466.49 Aligned_cols=407 Identities=25% Similarity=0.330 Sum_probs=344.0
Q ss_pred CCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
..++.+++.+.++.+ |+++|+++. ++++||+||.++++++|..|.+ .|+++|++|+++++|+++++++++||+
T Consensus 22 ~~~l~~~~~~~a~~~----p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~-~g~~~g~~V~i~~~~~~~~~~~~la~~ 94 (527)
T TIGR02275 22 DKPLTDILRDQAARY----PDAIAIICG--NRQWSYRELDQRADNLAAGLTK-LGIGQGDTAVVQLPNIAEFYIVFFALL 94 (527)
T ss_pred CCcHHHHHHHHHHHC----CCceEEEeC--CceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCcHHHHHHHHHHH
Confidence 468999999999988 999999987 7899999999999999999998 899999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchH--------HHHhc-c-CCeEEE-EcCC----chhhhhcccCCC
Q 012774 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--------HKLAK-L-KHRTIL-IDSP----EFDSMTMSWNSK 181 (456)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--------~~~~~-~-~~~~~~-~~~~----~~~~~~~~~~~~ 181 (456)
++|++++++++..+.+++.++++.++++++++++... ..+.. . ....+. .... ......... .
T Consensus 95 ~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 172 (527)
T TIGR02275 95 KLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRVEAELFLWLESP--A 172 (527)
T ss_pred HcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCCcchhhHHhhCc--C
Confidence 9999999999999999999999999999999986531 11111 1 112222 2111 011111110 0
Q ss_pred ccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHH--HHHHHhHhc
Q 012774 182 HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF--FCFRAAALM 259 (456)
Q Consensus 182 ~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~--~~~~~l~~G 259 (456)
.........++++++++|||||||.||+|+++|+++..++....... ....++++++.+|++|.+++. .++.++..|
T Consensus 173 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G 251 (527)
T TIGR02275 173 EPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-WLTQQTRYLCALPAAHNYPLSSPGALGVFYAG 251 (527)
T ss_pred ccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-CCCcCCEEEECCChHhhhhhhHHHHHHHHhcC
Confidence 01112345678999999999999999999999999988887766665 678899999999999999884 478889999
Q ss_pred ceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEec
Q 012774 260 ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (456)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~ 339 (456)
+++++.+.+++..+++.++++++|++.++|+++..+.+.......+++++|.+++||+++++++.+++.+.+ +.++++.
T Consensus 252 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~~~ 330 (527)
T TIGR02275 252 GCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDLSSLKLLQVGGAKFSEAAARRVPAVF-GCQLQQV 330 (527)
T ss_pred CeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHh-CCeEEee
Confidence 999998888999999999999999999999999999887766666788999999999999999999999988 8999999
Q ss_pred cCccccccccccccCCCCCCCCCcccccc-CCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCC
Q 012774 340 YGLTESTAGVFRTVGPDECRRWGSTGRLS-AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG 418 (456)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g 418 (456)
||+||++...... ........+++|+|+ ++..++|+| +++++++.|+.|||+++|+.++.||+++++.+.+.++.+|
T Consensus 331 YG~tE~~~~~~~~-~~~~~~~~~~~G~~~~~~~~v~i~d-~~g~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg 408 (527)
T TIGR02275 331 FGMAEGLVNYTRL-DDPAEIIFTTQGRPMSPDDEVRVVD-DHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEG 408 (527)
T ss_pred eccCccCccccCC-CCccccccccCCCCCCCCceEEEEC-CCCCCCCCCCceEEEecCCccchhhcCChhHhHhhcCcCC
Confidence 9999965443321 111223446899999 488999999 7789999999999999999999999999999999998899
Q ss_pred eeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 419 WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 419 ~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
||+|||+|++++||++++.||.||+||++|++|+|.|+
T Consensus 409 ~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~ei 446 (527)
T TIGR02275 409 FYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEI 446 (527)
T ss_pred CEEcCceEEEcCCccEEEEecccceeecCCEEECHHHH
Confidence 99999999999999999999999999999999999874
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-58 Score=471.45 Aligned_cols=409 Identities=30% Similarity=0.480 Sum_probs=343.2
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.++.+++.+.++++ |+++|+++. ++.+||+||.++++++|+.|.+ .|+++||+|+++++|+++++++++||++
T Consensus 32 ~~l~~~~~~~~~~~----p~~~a~~~~--~~~~Ty~ql~~~~~~~A~~L~~-~gi~~gd~V~l~~~n~~~~~~~~lA~~~ 104 (573)
T PRK05605 32 TTLVDLYDNAVARF----GDRPALDFF--GATTTYAELGKQVRRAAAGLRA-LGVRPGDRVAIVLPNCPQHIVAFYAVLR 104 (573)
T ss_pred CCHHHHHHHHHHHC----CCCeEEEeC--CCcccHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 69999999999999 999999987 7899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc----CCe-EEEEcC------------------------
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHR-TILIDS------------------------ 168 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~-~~~~~~------------------------ 168 (456)
+|++++|++|.++.+++.++++.++++++|+++.....+.+. ... ++.++.
T Consensus 105 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (573)
T PRK05605 105 LGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARA 184 (573)
T ss_pred cCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhccccceeEeeeccccccccccccccccccccccccc
Confidence 999999999999999999999999999999987765444321 111 111110
Q ss_pred ---------CchhhhhcccCCC--ccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCC-CCCCcE
Q 012774 169 ---------PEFDSMTMSWNSK--HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK-RVSPAV 236 (456)
Q Consensus 169 ---------~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~-~~~~~~ 236 (456)
..|+++....... ..........+++++++|||||||.||+|.++|+++..++......... ...+++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~ 264 (573)
T PRK05605 185 ALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPER 264 (573)
T ss_pred ccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcE
Confidence 0111111110000 0011123456899999999999999999999999998777654433311 235789
Q ss_pred EEEecchhhHhhH-HHHHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEec
Q 012774 237 MLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACG 315 (456)
Q Consensus 237 ~~~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~g 315 (456)
+++.+|++|.+|+ ..++.++..|+++++.+.++++.+++.++++++|++.++|++++.|.+........++++|.+++|
T Consensus 265 ~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~g 344 (573)
T PRK05605 265 VLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRNAFSG 344 (573)
T ss_pred EEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccEEEEC
Confidence 9999999999988 456678899999999988999999999999999999999999999998776666778999999999
Q ss_pred CCCCCHHHHHHHHHhCCCCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCC-CCCCCCCCcceEEE
Q 012774 316 AAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPET-GDSLPPGKEGELSI 394 (456)
Q Consensus 316 G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~-~~~~~~g~~Gel~i 394 (456)
|+++++++.+.+.+.+ +.++++.||+||+++++..... ......+++|+|++++.++|+|+++ +..++.|+.|||++
T Consensus 345 g~~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~Gel~v 422 (573)
T PRK05605 345 AMALPVSTVELWEKLT-GGLLVEGYGLTETSPIIVGNPM-SDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLV 422 (573)
T ss_pred CCcCCHHHHHHHHHHh-CCCeecccccchhchhhhcCCc-ccCCcCCccccCCCCCEEEEEcCCCCCccCCCCCeeEEEE
Confidence 9999999999999887 7899999999999877655322 2223457899999999999999666 68899999999999
Q ss_pred ecCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 395 RGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 395 ~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+|+.++.||+++++.+.+.| .+|||+|||+|++|++|++++.||.||+||++|++|+|.||
T Consensus 423 ~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eI 483 (573)
T PRK05605 423 RGPQVFKGYWNRPEETAKSF-LDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEV 483 (573)
T ss_pred ecCchhhhhcCChhHhhhcc-cCCCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHH
Confidence 99999999999999999888 46799999999999999999999999999999999999774
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-59 Score=477.40 Aligned_cols=415 Identities=20% Similarity=0.262 Sum_probs=330.4
Q ss_pred CCCCCHHH-HhhhcccCCCCCCCCCcEEEECC----CCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHH
Q 012774 35 DAPISAVD-YVSSLRATLPWRDDDTVALINSV----TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP 109 (456)
Q Consensus 35 ~~~~~~~~-~l~~~~~~~~~~~p~~~A~~~~~----~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~ 109 (456)
.+.+|+.. ++.+.++.+ |+++|+++.. ..+++||+||.++++++|+.|.+ +|+++||+|+++++|+++++
T Consensus 49 ~~~~n~~~~~l~~~~~~~----p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~ 123 (629)
T PRK10524 49 GGRTNLCHNAVDRHLAKR----PEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRS-LGVQRGDRVLIYMPMIAEAA 123 (629)
T ss_pred CcEeeHHHHHHHHhhccC----CCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHH
Confidence 45577744 455666667 9999998631 24689999999999999999998 89999999999999999999
Q ss_pred HHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccch---------HHHH----hc---cCCeEEEEcCC----
Q 012774 110 ILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSV---------VHKL----AK---LKHRTILIDSP---- 169 (456)
Q Consensus 110 ~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~----~~---~~~~~~~~~~~---- 169 (456)
++++||+++|++++|+++.++.+++.+++++++++++|+++.. .+.+ .. ....+++++..
T Consensus 124 ~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~ 203 (629)
T PRK10524 124 FAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPM 203 (629)
T ss_pred HHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc
Confidence 9999999999999999999999999999999999999997642 1111 11 12234444321
Q ss_pred --------chhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEec
Q 012774 170 --------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTM 241 (456)
Q Consensus 170 --------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~ 241 (456)
.+..+..... ...........+++++++|||||||.||+|+++|.++...............++|++++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 282 (629)
T PRK10524 204 ARVAGRDVDYATLRAQHL-GARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCAS 282 (629)
T ss_pred CcccCCcccHHHHHhcCC-CCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcC
Confidence 1222211100 0011112245688999999999999999999999987654443332222567889999999
Q ss_pred chhhHhhH-HHHHHHhHhcceEEEec----CCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCC--CCCCCCCCceEEEe
Q 012774 242 PYFHIYGL-FFCFRAAALMETAVVMQ----RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVAC 314 (456)
Q Consensus 242 p~~~~~g~-~~~~~~l~~G~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~v~~ 314 (456)
|+.|..+. ..++.++..|+++++.+ .+++..+++.|+++++|+++++|++++.|.+... ....+++++|.+++
T Consensus 283 ~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~ 362 (629)
T PRK10524 283 DIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFL 362 (629)
T ss_pred CCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEE
Confidence 99998876 56788999999999875 3578999999999999999999999999887542 23456889999999
Q ss_pred cCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccC--CCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceE
Q 012774 315 GAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG--PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGEL 392 (456)
Q Consensus 315 gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~--~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel 392 (456)
||+++++++.+++.+.+ +.++++.||+||++..+..... .....+.+++|+|+++++++|+|++++++++.|+.|||
T Consensus 363 ~Ge~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~Gel 441 (629)
T PRK10524 363 AGEPLDEPTASWISEAL-GVPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVL 441 (629)
T ss_pred eCCCCCHHHHHHHHHhc-CCCeEeccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCCcEEE
Confidence 99999999999999988 7899999999999854332211 11223467899999999999999558999999999999
Q ss_pred EEecC---CcccccCCCccccccccC---CCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 393 SIRGP---TIMKGYVGEPEVTSATLL---PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 393 ~i~g~---~~~~gy~~~~~~~~~~~~---~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+++|| +++.||+++++.+.+.+. .++||+|||+|++|+||+++|.||.||+||++|++|+|.||
T Consensus 442 ~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eI 511 (629)
T PRK10524 442 VIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREI 511 (629)
T ss_pred EEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHH
Confidence 99998 578899999876655432 46899999999999999999999999999999999999874
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-59 Score=468.69 Aligned_cols=407 Identities=26% Similarity=0.384 Sum_probs=351.1
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.++.+++...++++ |+++|+++. +..+||+||.+++.++|..|.+ .|+++||+|+++++|+++++++++||++
T Consensus 11 ~~l~~~l~~~a~~~----~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~-~gi~~~~~V~l~~~~~~~~~~~~~a~~~ 83 (523)
T PRK08316 11 QTIGDILRRSARRY----PDKTALVFG--DRSWTYAELDAAVNRVAAALLD-LGLKKGDRVAALGHNSDAYALLWLACAR 83 (523)
T ss_pred CCHHHHHHHHHHHC----CCCeEEEEC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 58999999999999 999999988 7899999999999999999999 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc----CCeEEEEc-----------CCchhhhhcccCCCc
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHRTILID-----------SPEFDSMTMSWNSKH 182 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~-----------~~~~~~~~~~~~~~~ 182 (456)
+|++++|+++..+.+++.++++.++++++++++.....+.+. ....+... ...+..+..... .
T Consensus 84 ~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 161 (523)
T PRK08316 84 AGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVLGGREAPGGWLDFADWAEAGS--V 161 (523)
T ss_pred cCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCccceeeeecccccccccchhhHHHHHhcCC--C
Confidence 999999999999999999999999999999998776655421 11111110 011222211111 0
Q ss_pred cccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHH-HHHHHhHhcce
Q 012774 183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF-FCFRAAALMET 261 (456)
Q Consensus 183 ~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~-~~~~~l~~G~~ 261 (456)
.........+++++++|||||||.||+|.++|+++..+.......+ ...+++++++.+|++|..++. .++.++..|++
T Consensus 162 ~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~ 240 (523)
T PRK08316 162 AEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-DMSADDIPLHALPLYHCAQLDVFLGPYLYVGAT 240 (523)
T ss_pred ccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHh-CCCCCceEEEccCCchhhhHHHHHHHHHhcCce
Confidence 1123345678899999999999999999999999988877766666 678899999999999999884 45567889999
Q ss_pred EEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccC
Q 012774 262 AVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYG 341 (456)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG 341 (456)
+++.+..++..+++.++++++|++.++|+++..+.+.......+++++|.+++||+.++.++.+.+++.+++.++++.||
T Consensus 241 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG 320 (523)
T PRK08316 241 NVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYG 320 (523)
T ss_pred EEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeec
Confidence 99998889999999999999999999999999999887666677899999999999999999999999998899999999
Q ss_pred ccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeee
Q 012774 342 LTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMR 421 (456)
Q Consensus 342 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~ 421 (456)
+||++.++......+.....+++|+|+++++++|+| +++..++.|+.|||+++|+.++.||+++++.+.+.| .++||+
T Consensus 321 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~-~~~~~~ 398 (523)
T PRK08316 321 QTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVD-DDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAF-RGGWFH 398 (523)
T ss_pred ccccCccccccCccccccccCCcccCCCCcEEEEEc-CCCCCCCCCCcceEEEECCchhhhhcCCHHHHHHHh-hCCCee
Confidence 999988766543333334567899999999999999 668999999999999999999999999999998888 689999
Q ss_pred ccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 422 TGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 422 TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|||+|++++||++++.||.||+||++|++|+|.|+
T Consensus 399 TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~i 433 (523)
T PRK08316 399 SGDLGVMDEEGYITVVDRKKDMIKTGGENVASREV 433 (523)
T ss_pred ccceEEEcCCceEEEecccccEEEeCCeEECHHHH
Confidence 99999999999999999999999999999999764
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-58 Score=464.85 Aligned_cols=404 Identities=26% Similarity=0.354 Sum_probs=345.3
Q ss_pred CCCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHH
Q 012774 36 APISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL 115 (456)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~ 115 (456)
...++.+++.+.++.+ |+++|+++. ++++||+||.++++++|..|.+ .|+++|++|+++++|+++++++++||
T Consensus 19 ~~~~l~~~l~~~a~~~----p~~~a~~~~--~~~~Ty~el~~~v~~la~~L~~-~gi~~g~~V~v~~~n~~~~~~~~lA~ 91 (542)
T PRK06155 19 SERTLPAMLARQAERY----PDRPLLVFG--GTRWTYAEAARAAAAAAHALAA-AGVKRGDRVALMCGNRIEFLDVFLGC 91 (542)
T ss_pred cccCHHHHHHHHHHHC----CCCeEEEeC--CccccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHH
Confidence 3478999999999999 999999987 7899999999999999999998 99999999999999999999999999
Q ss_pred HHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccC------CeEEEEcCCc-------hhhhhcccCCCc
Q 012774 116 LSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK------HRTILIDSPE-------FDSMTMSWNSKH 182 (456)
Q Consensus 116 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~------~~~~~~~~~~-------~~~~~~~~~~~~ 182 (456)
+++|++++|+++.++.+++.++++.+++++++++++....+.... ..++.++... +...... ....
T Consensus 92 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 170 (542)
T PRK06155 92 AWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVSVPAGWSTAPLP-PLDA 170 (542)
T ss_pred HHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCccccccccccchhhhc-ccCC
Confidence 999999999999999999999999999999999987776654321 1233333211 0000000 0000
Q ss_pred cccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceE
Q 012774 183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETA 262 (456)
Q Consensus 183 ~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~ 262 (456)
........++++++++|||||||.||+|+++|+++..........+ .....+++++..|++|..++..++.++..|+++
T Consensus 171 ~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~-~~~~~~~~l~~~pl~~~~~~~~~~~~l~~G~~~ 249 (542)
T PRK06155 171 PAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL-EIGADDVLYTTLPLFHTNALNAFFQALLAGATY 249 (542)
T ss_pred CCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhc-CCCCCCEEEEecCHHHHHHHHHHHHHHHcCceE
Confidence 1112234568899999999999999999999999987776666666 678899999999999999998789999999999
Q ss_pred EEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCc
Q 012774 263 VVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342 (456)
Q Consensus 263 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~ 342 (456)
++.+.+++..+++.|+++++|+++++|+++..|.+.........+++|.++.|| +++++.+.+++.+ ++++++.||+
T Consensus 250 ~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~g~--~~~~~~~~~~~~~-~~~v~~~YG~ 326 (542)
T PRK06155 250 VLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALGPG--VPAALHAAFRERF-GVDLLDGYGS 326 (542)
T ss_pred EeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccCceEEEEEcC--CCHHHHHHHHHHc-CCCEEeeecc
Confidence 999999999999999999999999999999999887766556677899888665 5789999999988 8899999999
Q ss_pred cccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecC---CcccccCCCccccccccCCCCe
Q 012774 343 TESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP---TIMKGYVGEPEVTSATLLPDGW 419 (456)
Q Consensus 343 tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~---~~~~gy~~~~~~~~~~~~~~g~ 419 (456)
||++.++.... .....+++|.+.++++++|+| ++++.++.|+.|||+++|+ .++.||+++++.+.+.| .++|
T Consensus 327 tE~~~~~~~~~---~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~-~~~~ 401 (542)
T PRK06155 327 TETNFVIAVTH---GSQRPGSMGRLAPGFEARVVD-EHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAW-RNLW 401 (542)
T ss_pred cccCccccCCC---CCCCCCCcCccCCCceEEEEC-CCCCCCCCCCceEEEEecCCccccchhhcCCHHHHHHhh-cCCc
Confidence 99987755421 234567899999999999999 6689999999999999998 68999999999988887 5899
Q ss_pred eeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 420 MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 420 ~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|+|||+|++++||++++.||.||+||++|++|+|.|+
T Consensus 402 ~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eI 438 (542)
T PRK06155 402 FHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEV 438 (542)
T ss_pred EeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHH
Confidence 9999999999999999999999999999999999764
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-58 Score=465.49 Aligned_cols=409 Identities=25% Similarity=0.358 Sum_probs=341.7
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEEC----CCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINS----VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~----~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~l 113 (456)
.|+.+.+.+.+..+ |+++|++.. ..+..+||+||.++++++|..|.+ .|+++|++|+++++|+++++++++
T Consensus 22 ~~~~~~~~~~~~~~----p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~-~g~~~g~~V~i~~~~~~~~~~~~l 96 (538)
T TIGR03208 22 RTINDHFDAAVANC----PDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLAR-LGVGRGDVVSFQLPNRWEFTALYL 96 (538)
T ss_pred CcHHHHHHHHHHHC----CCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHH
Confidence 58999999999998 999999852 124689999999999999999998 899999999999999999999999
Q ss_pred HHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchH-----HHHh---c-c--CCeEEEEcCC---chhhhhcccC
Q 012774 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV-----HKLA---K-L--KHRTILIDSP---EFDSMTMSWN 179 (456)
Q Consensus 114 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~---~-~--~~~~~~~~~~---~~~~~~~~~~ 179 (456)
||+++|++++|+++..+.+++.++++.++++++++++... .... . . ...++..+.. .++.+.....
T Consensus 97 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (538)
T TIGR03208 97 ACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGDDSFDRVLMTPE 176 (538)
T ss_pred HHHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCCCcCHHHHhhccc
Confidence 9999999999999999999999999999999999987542 1111 1 1 1123333321 2332221110
Q ss_pred CC--cc----ccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhH-HHH
Q 012774 180 SK--HE----LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFC 252 (456)
Q Consensus 180 ~~--~~----~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~ 252 (456)
.. .. .......++++++++|||||||.||+|+++|+++...+......+ ....++++++.+|++|..++ ..+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~g~~~~~ 255 (538)
T TIGR03208 177 RDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERL-ELGGGDVILMASPMAHQTGFMYGL 255 (538)
T ss_pred cccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhc-CCCCCCeEEEeCCchhHHHHHHHH
Confidence 00 00 011234668999999999999999999999999998888777766 57788999999999999887 567
Q ss_pred HHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCC
Q 012774 253 FRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFP 332 (456)
Q Consensus 253 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~ 332 (456)
+.++..|+++++.+.+++..+++.++++++|++.++|+++..+..........++++|.+++||+++++++.+++.+.+
T Consensus 256 ~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~- 334 (538)
T TIGR03208 256 MMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELL- 334 (538)
T ss_pred HHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCCcceEEEEcCCCCCHHHHHHHHHHc-
Confidence 8899999999999889999999999999999999999999998876544456688999999999999999999999988
Q ss_pred CCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCcccccc
Q 012774 333 KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSA 412 (456)
Q Consensus 333 ~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~ 412 (456)
++++++.||+||++.+..............++|+|+++++++|+| +++..++.|+.|||+++|+.++.||+++++.+.
T Consensus 335 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~- 412 (538)
T TIGR03208 335 GALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVID-ANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNS- 412 (538)
T ss_pred CCeEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEEC-CCCCCCcCCCCcEEEEecCcccccccCCccccc-
Confidence 789999999999987665432221122245789999999999999 678889999999999999999999999988765
Q ss_pred ccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 413 TLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 413 ~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
.+.+|||+|||+|++|++|+++++||.||+||++|++|+|.||
T Consensus 413 -~~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eI 455 (538)
T TIGR03208 413 -TDAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEI 455 (538)
T ss_pred -ccCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHH
Confidence 3468999999999999999999999999999999999999874
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-59 Score=552.03 Aligned_cols=402 Identities=20% Similarity=0.287 Sum_probs=351.6
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.+++++|.++++++ |+++|+++. ++++||+||.++++++|+.|.+ .|+++|++|+|+++++++++++++||++
T Consensus 3095 ~~~~~l~~~~a~~~----p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~gv~~g~~V~l~~~~s~~~vv~~lavl~ 3167 (3956)
T PRK12467 3095 RLVHQLIEAQVART----PEAPALVFG--DQQLSYAELNRRANRLAHRLIA-IGVGPDVLVGVAVERSVEMIVALLAVLK 3167 (3956)
T ss_pred ccHHHHHHHHHHhC----CCcceEeeC--CcccCHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEeCCCHHHHHHHHHHHh
Confidence 58999999999999 999999998 7899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-CCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEE
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-KHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 196 (456)
+|++++|++|.++.+++.++++++++++++++......+... ....+.++...... . ..........++++++
T Consensus 3168 aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~a~ 3241 (3956)
T PRK12467 3168 AGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPAGDTALTLDRLDLNG-----Y-SENNPSTRVMGENLAY 3241 (3956)
T ss_pred hCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccccCCceeeecchhhcc-----c-CCCCCcccCCCCceEE
Confidence 999999999999999999999999999999998776655422 22333333221110 0 1112223456789999
Q ss_pred EEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecC--CCHHHHH
Q 012774 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR--FDLKMML 274 (456)
Q Consensus 197 i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~ 274 (456)
++|||||||.||||+++|+++.+.+......+ ++..+|+++.++|+.|..+...++.++..|+++++.+. +++..++
T Consensus 3242 ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~l~ 3320 (3956)
T PRK12467 3242 VIYTSGSTGKPKGVGVRHGALANHLCWIAEAY-ELDANDRVLLFMSFSFDGAQERFLWTLICGGCLVVRDNDLWDPEELW 3320 (3956)
T ss_pred EEEccCCCCCcceeeehhHHHHHHHHHHHHhc-CCCcCCEEEEecCccHhHHHHHHHHHHhCCCEEEECCcccCCHHHHH
Confidence 99999999999999999999999998887777 78899999999999999988889999999999999875 7899999
Q ss_pred HHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccC
Q 012774 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (456)
Q Consensus 275 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~ 354 (456)
+.|+++++|++.++|+++..+.+... ..+++++|.+++|||++++++.++|.+.+++.++++.||+||++..++....
T Consensus 3321 ~~i~~~~vt~~~~~Ps~l~~l~~~~~--~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~ 3398 (3956)
T PRK12467 3321 QAIHAHRISIACFPPAYLQQFAEDAG--GADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKC 3398 (3956)
T ss_pred HHHHHcCCEEEEcCHHHHHHHHhccc--ccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEec
Confidence 99999999999999999999986532 3467889999999999999999999998888999999999999876654322
Q ss_pred CCC---CCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCC-------eeeccc
Q 012774 355 PDE---CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG-------WMRTGD 424 (456)
Q Consensus 355 ~~~---~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g-------~~~TGD 424 (456)
... .....++|+|++|++++|+| +.+++++.|+.|||+|+|+.+++||+++|+.|.++|..++ ||+|||
T Consensus 3399 ~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGD 3477 (3956)
T PRK12467 3399 GGDAVCEAPYAPIGRPVAGRSIYVLD-GQLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGD 3477 (3956)
T ss_pred ccccccCCCCCCCccccCCCEEEEEC-CCCCCCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccch
Confidence 111 12336899999999999999 7799999999999999999999999999999999997654 699999
Q ss_pred eEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 425 l~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+|++++||+|+|+||+|++||++|+||+|.||
T Consensus 3478 l~~~~~dG~l~~~GR~d~~iki~G~rIe~~EI 3509 (3956)
T PRK12467 3478 LARYRADGVIEYLGRIDHQVKIRGFRIELGEI 3509 (3956)
T ss_pred hheecCCCcEEEeccccceEeeceEeecHHHH
Confidence 99999999999999999999999999999875
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-59 Score=476.30 Aligned_cols=410 Identities=23% Similarity=0.281 Sum_probs=323.6
Q ss_pred CCCCCCCCCHHHHhhhcccCCCCCCCCCcEEEECCC----CceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCC
Q 012774 31 LPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVT----GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSI 106 (456)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~----~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~ 106 (456)
+|+.....++.++|.+.++++ |+++|+++.+. .+++||+||.++++++|+.|.+ .|+++||+|+++++|++
T Consensus 42 ~~~~~~~~~l~~~l~~~a~~~----pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-~Gv~~gd~V~i~~~n~~ 116 (624)
T PRK12582 42 HPLGPYPRSIPHLLAKWAAEA----PDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLD-LGLDPGRPVMILSGNSI 116 (624)
T ss_pred CCCCCcccCHHHHHHHHHHHC----CCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEecCCCH
Confidence 344344579999999999999 99999987421 2689999999999999999998 89999999999999999
Q ss_pred cHHHHHHHHHHhCCeEecCCCCCCH-----HHHHHHhhhcCCeEEEEccch--HHHHh---ccCCeEEEEcCC-------
Q 012774 107 EIPILYFSLLSLGVIISPANPVNTE-----SEISRQIQLSNPVIAFATSSV--VHKLA---KLKHRTILIDSP------- 169 (456)
Q Consensus 107 ~~~~~~la~~~~G~~~v~l~~~~~~-----~~l~~~l~~~~~~~vi~~~~~--~~~~~---~~~~~~~~~~~~------- 169 (456)
+++++++||+++|++++|++|.++. +++.++++.++++++|+++.. ...+. ....+++.++..
T Consensus 117 e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 196 (624)
T PRK12582 117 EHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLLDVTVVHVTGPGEGIASI 196 (624)
T ss_pred HHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhhcCceEEEEcCCCcccccc
Confidence 9999999999999999999998874 899999999999999998642 11111 123344444321
Q ss_pred chhhhhcccCCC-ccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCC---CCcEEEEecchhh
Q 012774 170 EFDSMTMSWNSK-HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRV---SPAVMLFTMPYFH 245 (456)
Q Consensus 170 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~---~~~~~~~~~p~~~ 245 (456)
.+.++....... .........++++++++|||||||.||+|+++|+++..+........ ... ..++++.++|++|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~~~~~~~l~~lPl~h 275 (624)
T PRK12582 197 AFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLR-PREPDPPPPVSLDWMPWNH 275 (624)
T ss_pred cHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhc-cccCCCCCceEEEechHHH
Confidence 233332211100 00111234568999999999999999999999999988766554333 222 3579999999999
Q ss_pred HhhH-HHHHHHhHhcceEEEecC-CCH---HHHHHHHHHhcceeEEecHHHHHHHhcCCCCC----CCCCCCceEEEecC
Q 012774 246 IYGL-FFCFRAAALMETAVVMQR-FDL---KMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD----GYDLSSLETVACGA 316 (456)
Q Consensus 246 ~~g~-~~~~~~l~~G~~~~~~~~-~~~---~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----~~~l~~lr~v~~gG 316 (456)
.+++ ..++.++..|+++++.+. +++ ..+++.++++++|+++++|+++..|.+..... ...++++|.+++||
T Consensus 276 ~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~slr~i~~gG 355 (624)
T PRK12582 276 TMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGG 355 (624)
T ss_pred HHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhheeEEEecC
Confidence 9998 445678889999988753 333 45677788999999999999999887643222 13468999999999
Q ss_pred CCCCHHHHHHHHHhC-----CCCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcce
Q 012774 317 APLGKDTIMAFASKF-----PKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGE 391 (456)
Q Consensus 317 ~~~~~~~~~~~~~~~-----~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Ge 391 (456)
+++++++.+.+++.+ .++++++.||+||++.++.... ....+.+++|+|+||++++|++ .|+.||
T Consensus 356 a~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~--~~~~~~~svG~p~pg~~v~i~~--------~G~~GE 425 (624)
T PRK12582 356 ATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTH--WDTERVGLIGLPLPGVELKLAP--------VGDKYE 425 (624)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeeccc--CCCCCCCCCCcCCCCcEEEEcc--------CCCceE
Confidence 999999999998863 1468999999999987654321 1224568999999999999964 467899
Q ss_pred EEEecCCcccccCCCccccccccCCCCeeeccceEEE-c---cCCcEEEecccccceee-CCeeecCCCC
Q 012774 392 LSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYI-D---EDGFLFIVDRLKDLIKY-KGYQVLPLLN 456 (456)
Q Consensus 392 l~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~-~---~dg~l~~~GR~~d~ik~-~G~~v~p~e~ 456 (456)
|+++|+.++.||+++++.+.+.|+.+|||+|||+|++ | ++|+|+|.||+||+||+ +|++|+|.|+
T Consensus 426 l~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~i 495 (624)
T PRK12582 426 VRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTL 495 (624)
T ss_pred EEEECCcccccccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHH
Confidence 9999999999999999999999988999999999998 4 46999999999999996 6999998753
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-58 Score=461.77 Aligned_cols=404 Identities=27% Similarity=0.405 Sum_probs=346.2
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
-++.+++.+++ .+ |+++|+.+. .++.+||+||.++++++|+.|.+ .|+++||+|+++++|+++++++++||++
T Consensus 3 ~~l~~~~~~~~-~~----~~~~a~~~~-~~~~~Ty~eL~~~~~~la~~L~~-~g~~~gd~v~i~~~~~~e~~v~~la~~~ 75 (504)
T PRK07514 3 NNLFDALRAAF-AD----RDAPFIETP-DGLRYTYGDLDAASARLANLLVA-LGVKPGDRVAVQVEKSPEALALYLATLR 75 (504)
T ss_pred ccHHHHHHHHh-hC----CCCeEEEeC-CCCEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 47899999999 77 999999874 36899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc----CCe-EEEEcCCc---hhhhhcccCCCccccccCC
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHR-TILIDSPE---FDSMTMSWNSKHELDRAKV 189 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 189 (456)
+|++++|+++..+.+++..+++.++++++++++.....+... ... ++.++... +.+..... .........
T Consensus 76 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 153 (504)
T PRK07514 76 AGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVETLDADGTGSLLEAAAAA--PDDFETVPR 153 (504)
T ss_pred cCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhccCCceEEEecCCCcccHHHhhhhc--CcccCcccC
Confidence 999999999999999999999999999999998776654422 222 33333211 11111110 001112345
Q ss_pred CCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhH-HHHHHHhHhcceEEEecCC
Q 012774 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRF 268 (456)
Q Consensus 190 ~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~ 268 (456)
..+++++++|||||||.||+|.++|+++...+......+ ...+++++++.+|++|..++ ..++.++..|+++++.+..
T Consensus 154 ~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~ 232 (504)
T PRK07514 154 GADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW-RFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKF 232 (504)
T ss_pred CCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHh-CCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECCCC
Confidence 678999999999999999999999999998887766666 67788999999999999988 5677899999999999999
Q ss_pred CHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccc
Q 012774 269 DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG 348 (456)
Q Consensus 269 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~ 348 (456)
++..+++.+. ++|++.++|+++..++.........++++|.+++||+++++++.+.|.+.+ +.++++.||+||++..
T Consensus 233 ~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~ 309 (504)
T PRK07514 233 DPDAVLALMP--RATVMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERT-GHAILERYGMTETNMN 309 (504)
T ss_pred CHHHHHHHHH--hheeeecHHHHHHHHHcCCCCCcccccceeeEEecCCCCCHHHHHHHHHHh-CCcceeeccccccccc
Confidence 9999999994 799999999999999887666666788999999999999999999999987 7899999999999765
Q ss_pred cccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEE
Q 012774 349 VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYI 428 (456)
Q Consensus 349 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~ 428 (456)
.... ........++|.|+++++++|+|++++.+++.|+.|||+++|+.++.||+++++.+.+.|..++||+|||+|++
T Consensus 310 ~~~~--~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~ 387 (504)
T PRK07514 310 TSNP--YDGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKI 387 (504)
T ss_pred ccCC--ccccccCcccccCCCCcEEEEEECCCCCCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEE
Confidence 4432 12223457899999999999999889999999999999999999999999999999999987899999999999
Q ss_pred ccCCcEEEecccccceeeCCeeecCCCC
Q 012774 429 DEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 429 ~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+++|++++.||.||+||++|++|+|.|+
T Consensus 388 ~~~g~~~~~GR~~~~i~~~G~~i~~~~I 415 (504)
T PRK07514 388 DERGYVHIVGRGKDLIISGGYNVYPKEV 415 (504)
T ss_pred cCCccEEEeccccceEEeCCeEECHHHH
Confidence 9999999999999999999999999874
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=513.25 Aligned_cols=401 Identities=20% Similarity=0.266 Sum_probs=345.7
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.++.++|.+.++.+ |+++|+++. ++.+||+||.++++++|+.|.+ .|+++|++|+++++++++++++++||++
T Consensus 458 ~~l~~~~~~~~~~~----p~~~Al~~~--~~~~Ty~eL~~~~~~la~~L~~-~g~~~g~~V~l~~~~~~~~i~~~la~~~ 530 (1296)
T PRK10252 458 TTLSALVAQQAAKT----PDAPALADA--RYQFSYREMREQVVALANLLRE-RGVKPGDSVAVALPRSVFLTLALHAIVE 530 (1296)
T ss_pred CCHHHHHHHHHHhC----CCCeEEEcC--CCcEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 68999999999999 999999988 7899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccC-CeEEEEcCCchhhhhcccCCCccccccCCCCCCEEE
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK-HRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 196 (456)
+|++++|++|..+.+++.++++.+++++++++.+....+.... ......+ ....... ........++++++
T Consensus 531 ~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~a~ 602 (1296)
T PRK10252 531 AGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADVPDLTSLCYN-----APLAPQG---AAPLQLSQPHHTAY 602 (1296)
T ss_pred hCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccCCCceeeecc-----ccccccc---CCCCCCCCCCCeEE
Confidence 9999999999999999999999999999999987766554321 1111111 1000000 11112235789999
Q ss_pred EEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEec---CCCHHHH
Q 012774 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ---RFDLKMM 273 (456)
Q Consensus 197 i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~---~~~~~~~ 273 (456)
++|||||||.||||+++|+++.+.+......+ ...+++++++..|++|..++..++.++..|+++++.+ ..++..+
T Consensus 603 i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~ 681 (1296)
T PRK10252 603 IIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY-PLTADDVVLQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAM 681 (1296)
T ss_pred EEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-CCCCCCEEEEeCCcchhhhHHHHHHHHhCCCEEEECChhccCCHHHH
Confidence 99999999999999999999999988887777 6888999999999999998888999999999999976 3689999
Q ss_pred HHHHHHhcceeEEecHHHHHHHhcCCCCCC--CCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCcccccccccc
Q 012774 274 LKAVEEFRVTHAAVTPPIVVAMSKGGSTDG--YDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFR 351 (456)
Q Consensus 274 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~ 351 (456)
++.|+++++|++.++|+++..+++...... ..++++|.+++|||++++++.+.|.+.+ +.++++.||+||++..++.
T Consensus 682 ~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~ 760 (1296)
T PRK10252 682 QQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREWQQLT-GAPLHNLYGPTEAAVDVSW 760 (1296)
T ss_pred HHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEEecCCCCHHHHHHHHhcC-CCEEEeCCCcchhhheeee
Confidence 999999999999999999999887643322 3468999999999999999999999887 8899999999999876554
Q ss_pred ccCCCC-----CCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCC------Cee
Q 012774 352 TVGPDE-----CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD------GWM 420 (456)
Q Consensus 352 ~~~~~~-----~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~------g~~ 420 (456)
...... .....++|+|+++++++|+| +.+++++.|+.|||+|+|+.+++||+++++.|.+.|..+ +||
T Consensus 761 ~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y 839 (1296)
T PRK10252 761 YPAFGEELAAVRGSSVPIGYPVWNTGLRILD-ARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMY 839 (1296)
T ss_pred eecccccccccCCCCCCcccccCCCEEEEEC-CCCCCCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEE
Confidence 322111 22346799999999999999 789999999999999999999999999999999988654 499
Q ss_pred eccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 421 RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 421 ~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+|||+|++++||+++++||.|++||++|+||+|.||
T Consensus 840 ~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eI 875 (1296)
T PRK10252 840 RTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEI 875 (1296)
T ss_pred ecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHH
Confidence 999999999999999999999999999999999875
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-58 Score=464.33 Aligned_cols=407 Identities=26% Similarity=0.412 Sum_probs=342.1
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.++.+++.+.++.+ |+++|+++. +++++||+||.++++++|+.|++ .|+++||+|+++++|+++++++++||++
T Consensus 23 ~~l~~~~~~~~~~~----pd~~a~~~~-~~~~~Ty~~l~~~v~~la~~l~~-~G~~~gd~V~i~~~n~~~~~~~~lA~~~ 96 (547)
T PRK06087 23 ASLADYWQQTARAM----PDKIAVVDN-HGASYTYSALDHAASRLANWLLA-KGIEPGDRVAFQLPGWCEFTIIYLACLK 96 (547)
T ss_pred CCHHHHHHHHHHHC----CCceEEEcC-CCCEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 57999999999999 999999875 34799999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccch-----HHHHh----cc-CC-eEEEEcCC-------chhhhhcccC
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSV-----VHKLA----KL-KH-RTILIDSP-------EFDSMTMSWN 179 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~----~~-~~-~~~~~~~~-------~~~~~~~~~~ 179 (456)
+|++++|+++..+.+++.++++.++++++++++.. .+.+. .. .. .++.++.. .+..+.....
T Consensus 97 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (547)
T PRK06087 97 VGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSSLSLSQIIADYE 176 (547)
T ss_pred cCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCCcCccCHHHHhccCC
Confidence 99999999999999999999999999999997532 11111 11 11 23333321 1122211111
Q ss_pred CCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhH-HHHHHHhHh
Q 012774 180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAAL 258 (456)
Q Consensus 180 ~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~ 258 (456)
. .........+++++++|||||||.||+|.++|.++..........+ ...+++++++.+|++|.+++ ..++.++..
T Consensus 177 ~--~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~ 253 (547)
T PRK06087 177 P--LTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL-NLTWQDVFMMPAPLGHATGFLHGVTAPFLI 253 (547)
T ss_pred c--ccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-CCCCCCeEEEecchHHHHHHHHHHHHHHhc
Confidence 0 1112234568999999999999999999999999988777666555 57889999999999999987 567788899
Q ss_pred cceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEe
Q 012774 259 METAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ 338 (456)
Q Consensus 259 G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~ 338 (456)
|+++++.+.+++..+++.|+++++|+++.+|+.+..+++.......+++++|.+++||+++++++.+.+.+. ++++++
T Consensus 254 g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~~~~~~~~~~~~~--~~~l~~ 331 (547)
T PRK06087 254 GARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVARECQQR--GIKLLS 331 (547)
T ss_pred CCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCCCeEEEEEcCCCCCHHHHHHHHHc--CCcEEE
Confidence 999999999999999999999999999988888877777655555678899999999999999999988875 899999
Q ss_pred ccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCC
Q 012774 339 AYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG 418 (456)
Q Consensus 339 ~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g 418 (456)
.||+||++...+...........+++|+|++++.++++| +++.+++.|+.|||+++|+.++.||+++++.+...+..+|
T Consensus 332 ~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g 410 (547)
T PRK06087 332 VYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD-EARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEG 410 (547)
T ss_pred EecccccCCccccCCCcchhhcCCcCCccCCCceEEEEc-CCCCCCcCCCcceEEEecccccccccCCHHHHHHHhCCCC
Confidence 999999987765432211122346789999999999999 7788999999999999999999999999999988887789
Q ss_pred eeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 419 WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 419 ~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
||+|||+++++++|+++++||.||+|+.+|++|+|.++
T Consensus 411 ~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~i 448 (547)
T PRK06087 411 WYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREV 448 (547)
T ss_pred CcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHH
Confidence 99999999999999999999999999999999999764
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-58 Score=463.76 Aligned_cols=409 Identities=25% Similarity=0.372 Sum_probs=333.2
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
-|+.+++.+.++++ |+++|+++....+.+||+||.++++++|+.|.+ .|+++||+|+++++|+++++++++||++
T Consensus 16 ~~l~~~l~~~a~~~----p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~-~gv~~gd~V~i~~~n~~~~~~~~lA~~~ 90 (534)
T PRK05852 16 PRIADLVEVAATRL----PEAPALVVTADRIAISYRDLARLVDDLAGQLTR-SGLLPGDRVALRMGSNAEFVVALLAASR 90 (534)
T ss_pred ccHHHHHHHHHHhC----CCCcEEEecCCCCcccHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCCcHHHHHHHHHHHH
Confidence 48999999999998 999999886555689999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc--C--CeEEEEcCCc------hhh-hhcccCCCccccc
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL--K--HRTILIDSPE------FDS-MTMSWNSKHELDR 186 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~--~--~~~~~~~~~~------~~~-~~~~~~~~~~~~~ 186 (456)
+|++++|+++.++.+++.++++.++++++|++.......... . ...+.+.... +.. .............
T Consensus 91 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (534)
T PRK05852 91 ADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSVHLDAATEPTPATST 170 (534)
T ss_pred cCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccccccceeeeecccccccccccccccccccCCCccccc
Confidence 999999999999999999999999999999876533221110 0 0111111100 000 0000000000011
Q ss_pred cCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhH-HHHHHHhHhcceEEEe
Q 012774 187 AKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVM 265 (456)
Q Consensus 187 ~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~~~~ 265 (456)
.....++.++++|||||||.||+|.++|+++...+......+ ....+|++++.+|++|.+++ ..++.++..|+++++.
T Consensus 171 ~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~ 249 (534)
T PRK05852 171 PEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-RLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLP 249 (534)
T ss_pred cCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-CCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeC
Confidence 112246789999999999999999999999998888777766 67889999999999999998 4567788888888875
Q ss_pred c--CCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCC--CCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccC
Q 012774 266 Q--RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD--GYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYG 341 (456)
Q Consensus 266 ~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG 341 (456)
. .+++..+++.|+++++|+++++|+++..|.+..... ...++++|.++++|+++++++++.+.+.+ +.++++.||
T Consensus 250 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~-~~~v~~~YG 328 (534)
T PRK05852 250 ARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEF-AAPVVCAFG 328 (534)
T ss_pred CCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCCCHHHHHHHHHHh-CCChhhccC
Confidence 4 478999999999999999999999999998765322 23468999999999999999999999998 889999999
Q ss_pred ccccccccccccCC------CCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccC
Q 012774 342 LTESTAGVFRTVGP------DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLL 415 (456)
Q Consensus 342 ~tE~~~~~~~~~~~------~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~ 415 (456)
+||++..++..... ......+..|. .++++++|+| ++++.+++|+.|||+++|+.+++||+++++.+.+.|
T Consensus 329 ~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~-~~g~~~~i~d-~~g~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~- 405 (534)
T PRK05852 329 MTEATHQVTTTQIEGIGQTENPVVSTGLVGR-STGAQIRIVG-SDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANF- 405 (534)
T ss_pred ccccchhhhcCCccccccccCcccccccCCC-CCCCeEEEEC-CCCCCCCCCCceEEEEecCcccchhcCCcccchhhh-
Confidence 99998765542211 01112233444 7999999999 678899999999999999999999999999999888
Q ss_pred CCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 416 PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 416 ~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
.+|||+|||+|++|+||++++.||.||+||++|.+|+|.|+
T Consensus 406 ~~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~i 446 (534)
T PRK05852 406 TDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERV 446 (534)
T ss_pred cCCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHH
Confidence 58999999999999999999999999999999999999764
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-58 Score=513.47 Aligned_cols=410 Identities=17% Similarity=0.205 Sum_probs=336.8
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEEC-------CCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINS-------VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI 110 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~-------~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~ 110 (456)
-++++++.++++.+ |+++|+++. ..++++||+||.++++++|+.|.+ .|+++|++|+++++|++++++
T Consensus 236 ~~l~~~~~~~a~~~----pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~-~gv~~g~~V~i~~~~~~~~i~ 310 (1389)
T TIGR03443 236 GAIHDIFADNAEKH----PDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLK-TGIKRGDVVMIYAYRGVDLVV 310 (1389)
T ss_pred CcHHHHHHHHHHhC----CCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEecCCHHHHH
Confidence 47999999999999 999999863 135789999999999999999998 899999999999999999999
Q ss_pred HHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccch---HHHHhc-----c----CCeEEEEcCC-ch------
Q 012774 111 LYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSV---VHKLAK-----L----KHRTILIDSP-EF------ 171 (456)
Q Consensus 111 ~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---~~~~~~-----~----~~~~~~~~~~-~~------ 171 (456)
+++||+++|++++|++|.++.+++.++++.+++++++++... ...+.. . ....+.+... ..
T Consensus 311 ~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1389)
T TIGR03443 311 AVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLVGGSLE 390 (1389)
T ss_pred HHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEecccccccccccc
Confidence 999999999999999999999999999999999999986542 111110 0 0111111110 00
Q ss_pred ---hhhhcccCC-CccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHh
Q 012774 172 ---DSMTMSWNS-KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIY 247 (456)
Q Consensus 172 ---~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 247 (456)
......... ..........++++++++|||||||.||||+++|+++.+.+......+ +...+++++...|++|..
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~~~~~d~ 469 (1389)
T TIGR03443 391 GGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRF-GLSENDKFTMLSGIAHDP 469 (1389)
T ss_pred cccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-CCCCCCEEEEecCceecc
Confidence 000000000 000111224578999999999999999999999999999887777776 678899999999999998
Q ss_pred hHHHHHHHhHhcceEEEecC---CCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHH
Q 012774 248 GLFFCFRAAALMETAVVMQR---FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTI 324 (456)
Q Consensus 248 g~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~ 324 (456)
++..++.++..|+++++.+. .++..+++.|+++++|+++++|+++..|.... ...++++|.+++||+++++...
T Consensus 470 ~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~ 546 (1389)
T TIGR03443 470 IQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA---TTPIPSLHHAFFVGDILTKRDC 546 (1389)
T ss_pred hHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc---cccCCCccEEEEecccCCHHHH
Confidence 88889999999999998864 36889999999999999999999999987543 2357899999999999999999
Q ss_pred HHHHHhCCCCceEeccCccccccccccccCCCC---------CCCCCccccccCCcEEEEEcCC-CCCCCCCCCcceEEE
Q 012774 325 MAFASKFPKVVLVQAYGLTESTAGVFRTVGPDE---------CRRWGSTGRLSAGLEAKIVDPE-TGDSLPPGKEGELSI 394 (456)
Q Consensus 325 ~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~---------~~~~~~~G~~~~~~~~~i~d~~-~~~~~~~g~~Gel~i 394 (456)
+++.+.+++.++++.||+||++..++....... .....++|+|+++++++|+|++ .+++++.|+.|||+|
T Consensus 547 ~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~~GEL~i 626 (1389)
T TIGR03443 547 LRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGEVGEIYV 626 (1389)
T ss_pred HHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEECCccCCCcCCCCCceEEEe
Confidence 999998889999999999999876554221111 1123578999999999999954 357899999999999
Q ss_pred ecCCcccccCCCccccccccC----------------------------CCCeeeccceEEEccCCcEEEecccccceee
Q 012774 395 RGPTIMKGYVGEPEVTSATLL----------------------------PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKY 446 (456)
Q Consensus 395 ~g~~~~~gy~~~~~~~~~~~~----------------------------~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~ 446 (456)
+|+++++||+++|+.|.+.|. .++||+|||+|++++||+|+|+||.||+||+
T Consensus 627 ~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki 706 (1389)
T TIGR03443 627 RAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKI 706 (1389)
T ss_pred cccccchhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEe
Confidence 999999999999999998873 2579999999999999999999999999999
Q ss_pred CCeeecCCCC
Q 012774 447 KGYQVLPLLN 456 (456)
Q Consensus 447 ~G~~v~p~e~ 456 (456)
+|+||+|.||
T Consensus 707 ~G~rI~p~eI 716 (1389)
T TIGR03443 707 RGFRIELGEI 716 (1389)
T ss_pred CcEEecHHHH
Confidence 9999999875
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-58 Score=464.40 Aligned_cols=412 Identities=27% Similarity=0.377 Sum_probs=344.5
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.++.++|.+.++++ |+++|+++...++.+||+||.++++++|+.|.+ .|+++||+|+++++|+++++++++||++
T Consensus 18 ~~l~~~l~~~~~~~----p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~-~gi~~g~~V~i~~~~~~~~~~~~~a~~~ 92 (558)
T PRK12583 18 QTIGDAFDATVARF----PDREALVVRHQALRYTWRQLADAVDRLARGLLA-LGVQPGDRVGIWAPNCAEWLLTQFATAR 92 (558)
T ss_pred CcHHHHHHHHHHHC----CCCeEEEecCCCcEecHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCChHHHHHHHHHHh
Confidence 68999999999999 999999987567899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchH-----HHHh----cc--------------CC-eEEEEcCC----
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV-----HKLA----KL--------------KH-RTILIDSP---- 169 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~----~~--------------~~-~~~~~~~~---- 169 (456)
+|++++++++..+.+++.++++.++++++|+++... ..+. .. .. .++..+..
T Consensus 93 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (558)
T PRK12583 93 IGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAPPPG 172 (558)
T ss_pred hCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCCCcc
Confidence 999999999999999999999999999999876432 1111 00 00 11111111
Q ss_pred --chhhhhcccCC----CccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecch
Q 012774 170 --EFDSMTMSWNS----KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPY 243 (456)
Q Consensus 170 --~~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~ 243 (456)
.|++....... ..........+++.++++|||||||.||+|.++|+++.+++......+ +...+|++++.+|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~~~~~p~ 251 (558)
T PRK12583 173 FLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESL-GLTEHDRLCVPVPL 251 (558)
T ss_pred ccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHh-CCCCCCeEEEecCc
Confidence 12222111100 000111234568899999999999999999999999988887776666 67888999999999
Q ss_pred hhHhhH-HHHHHHhHhcceEEEec-CCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCH
Q 012774 244 FHIYGL-FFCFRAAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGK 321 (456)
Q Consensus 244 ~~~~g~-~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~ 321 (456)
+|.+|. ..++.++..|+++++.. .+++..+++.++++++|+++++|+++..++........+++++|.+++||+++++
T Consensus 252 ~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~lr~i~~~G~~~~~ 331 (558)
T PRK12583 252 YHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRTGIMAGAPCPI 331 (558)
T ss_pred hhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCchhheEEEecCCCCCH
Confidence 999998 56778888899888653 5789999999999999999999999998887665555678999999999999999
Q ss_pred HHHHHHHHhCCCCceEeccCccccccccccccCC-CCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcc
Q 012774 322 DTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGP-DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIM 400 (456)
Q Consensus 322 ~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~ 400 (456)
++.+++.+.+++..+++.||+||++.+....... ....+..++|+|.+++.++|+|++ +..++.|+.|||+++|+.++
T Consensus 332 ~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~-~~~~~~g~~Gel~v~g~~~~ 410 (558)
T PRK12583 332 EVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPD-GATVPRGEIGELCTRGYSVM 410 (558)
T ss_pred HHHHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEECCC-CCCCCCCCeeEEEEEeCccc
Confidence 9999999998677899999999999876543221 122345789999999999999955 89999999999999999999
Q ss_pred cccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 401 KGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 401 ~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
.||+++++.+...++.++||+|||+|++++||++++.||.||+||++|++|+|.|+
T Consensus 411 ~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~I 466 (558)
T PRK12583 411 KGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREI 466 (558)
T ss_pred hhhcCChHHHHhhcCCCCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHH
Confidence 99999999998888778999999999999999999999999999999999999764
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-58 Score=472.94 Aligned_cols=403 Identities=25% Similarity=0.361 Sum_probs=322.8
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECC-------CCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSV-------TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI 110 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~-------~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~ 110 (456)
+|+.+++.+.++++ |+++|+++.+ ..+++||+||.++++++|++|.+ . +++||+|+++++|++++++
T Consensus 34 ~~~~~~~~~~~~~~----~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-~-~~~gd~V~l~~~n~~e~~~ 107 (612)
T PRK12476 34 TTLISLIERNIANV----GDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQ-V-AGPGDRVAILAPQGIDYVA 107 (612)
T ss_pred CcHHHHHHHHHHhC----CCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHH-h-cCCCCEEEEECCCChhHHH
Confidence 78999999888888 9999998631 12489999999999999999998 4 8999999999999999999
Q ss_pred HHHHHHHhCCeEecC-CCCCC--HHHHHHHhhhcCCeEEEEccchHHHHhc----cC----CeEEEEcCCchhhhhcccC
Q 012774 111 LYFSLLSLGVIISPA-NPVNT--ESEISRQIQLSNPVIAFATSSVVHKLAK----LK----HRTILIDSPEFDSMTMSWN 179 (456)
Q Consensus 111 ~~la~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~ 179 (456)
+++||+++|++++|+ ++..+ .+++.+++++++++++|++++....+.. .. ..++.++.. ....
T Consensus 108 ~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~- 181 (612)
T PRK12476 108 GFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAI-----PDSA- 181 (612)
T ss_pred HHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEeccc-----cccc-
Confidence 999999999999999 57766 7899999999999999998876654431 11 123333211 0000
Q ss_pred CCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCC-CCCCcEEEEecchhhHhhHHHHHHHhHh
Q 012774 180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK-RVSPAVMLFTMPYFHIYGLFFCFRAAAL 258 (456)
Q Consensus 180 ~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~g~~~~~~~l~~ 258 (456)
..........++++++++|||||||.||+|+++|+++..++......+ . ..+++++++++|++|.+++...+.+++.
T Consensus 182 -~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~~~~~l~~~Pl~h~~g~~~~~~~~~~ 259 (612)
T PRK12476 182 -GESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSI-DLLDRNTHGVSWLPLYHDMGLSMIGFPAVY 259 (612)
T ss_pred -cccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHh-ccCCCCceEEEeCCcccccchHHHHHHHhc
Confidence 001111234568999999999999999999999999987766555444 4 5778999999999999999766666666
Q ss_pred cceEEEecC--C--CHHHHHHHHH--HhcceeEEecHHHHHHHhcCCC----CCCCCCCCceEEEecCCCCCHHHHHHHH
Q 012774 259 METAVVMQR--F--DLKMMLKAVE--EFRVTHAAVTPPIVVAMSKGGS----TDGYDLSSLETVACGAAPLGKDTIMAFA 328 (456)
Q Consensus 259 G~~~~~~~~--~--~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~~~----~~~~~l~~lr~v~~gG~~~~~~~~~~~~ 328 (456)
|++.++... + ++..+++.++ ++++++++.+|+++..++.... ....+++++| +++||+++++++.++|+
T Consensus 260 gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr-~~~gg~~~~~~~~~~~~ 338 (612)
T PRK12476 260 GGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVV-LIIGSEPVSIDAVTTFN 338 (612)
T ss_pred CCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHhe-EEecccCCCHHHHHHHH
Confidence 777666542 3 8899999995 4899999999999887776421 1244688999 99999999999999999
Q ss_pred HhCC-----CCceEeccCccccccccccccCCCC-------------------------CCCCCccccccCCcEEEEEcC
Q 012774 329 SKFP-----KVVLVQAYGLTESTAGVFRTVGPDE-------------------------CRRWGSTGRLSAGLEAKIVDP 378 (456)
Q Consensus 329 ~~~~-----~~~i~~~yG~tE~~~~~~~~~~~~~-------------------------~~~~~~~G~~~~~~~~~i~d~ 378 (456)
+.|+ ...+++.||+||++..++....... ....+++|+|+++++++|+|+
T Consensus 339 ~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~ 418 (612)
T PRK12476 339 KAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDP 418 (612)
T ss_pred HHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEeC
Confidence 9772 3459999999998765433211100 011257899999999999996
Q ss_pred CCCCCCCCCCcceEEEecCCcccccCCCccccccccCC------------------CCeeeccceEEEccCCcEEEeccc
Q 012774 379 ETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP------------------DGWMRTGDLCYIDEDGFLFIVDRL 440 (456)
Q Consensus 379 ~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~------------------~g~~~TGDl~~~~~dg~l~~~GR~ 440 (456)
+++++++.|+.|||+++|++++.||+++++.|.+.|.. ++||+|||+|++ +||+|+|.||+
T Consensus 419 ~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~-~dG~l~i~GR~ 497 (612)
T PRK12476 419 DTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVY-LDGELYITGRI 497 (612)
T ss_pred CCCcCCCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeecccccee-ECCEEEEEecc
Confidence 66999999999999999999999999999999888741 359999999998 59999999999
Q ss_pred ccceeeCCeeecCCCC
Q 012774 441 KDLIKYKGYQVLPLLN 456 (456)
Q Consensus 441 ~d~ik~~G~~v~p~e~ 456 (456)
||+||++|++|+|.||
T Consensus 498 ~d~I~~~G~~I~p~eI 513 (612)
T PRK12476 498 ADLIVIDGRNHYPQDI 513 (612)
T ss_pred CcEEEECCcccCHHHH
Confidence 9999999999999875
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-58 Score=460.88 Aligned_cols=409 Identities=27% Similarity=0.411 Sum_probs=340.4
Q ss_pred CCCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHH
Q 012774 36 APISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL 115 (456)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~ 115 (456)
..+|+.+++...++++ |+++|+++. +.++||+||.++++++|..|.+ .|+++|++|+++++|+++++++++||
T Consensus 5 ~~~~~~~~~~~~a~~~----p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~-~g~~~g~~v~i~~~~~~~~~~~~lA~ 77 (528)
T PRK07470 5 RVMNLAHFLRQAARRF----PDRIALVWG--DRSWTWREIDARVDALAAALAA-RGVRKGDRILVHSRNCNQMFESMFAA 77 (528)
T ss_pred cCCCHHHHHHHHHHHC----CCceEEEEC--CccccHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 4489999999999999 999999987 7899999999999999999998 89999999999999999999999999
Q ss_pred HHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc------CCeEEEEcC----CchhhhhcccCCCcccc
Q 012774 116 LSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KHRTILIDS----PEFDSMTMSWNSKHELD 185 (456)
Q Consensus 116 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~------~~~~~~~~~----~~~~~~~~~~~~~~~~~ 185 (456)
+++|++++|+++..+.+++.++++.+++++++++++........ ...++.++. .++.++....... ...
T Consensus 78 ~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 156 (528)
T PRK07470 78 FRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGARAGLDYEALVARHLGA-RVA 156 (528)
T ss_pred HhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCcccccHHHHHhcCCCC-CCC
Confidence 99999999999999999999999999999999998765443311 112333322 2233332221111 112
Q ss_pred ccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCC-CCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEE
Q 012774 186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS-PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVV 264 (456)
Q Consensus 186 ~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~ 264 (456)
.....++++++++|||||||.||+|.++|+++...+....... .+....|+++..+|++|.+++..++ .+..|++.++
T Consensus 157 ~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~-~~~~g~~~~~ 235 (528)
T PRK07470 157 NAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQLC-QVARGAATVL 235 (528)
T ss_pred cccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHHHH-HHhcCceEEE
Confidence 2334668899999999999999999999999876544322222 2456789999999999999886554 5667777766
Q ss_pred ec--CCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCc
Q 012774 265 MQ--RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342 (456)
Q Consensus 265 ~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~ 342 (456)
.+ .++++.+++.|+++++|++.++|++++.+.+........++++|.+++||++++++..+++.+.+ +..+++.||+
T Consensus 236 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~~~YG~ 314 (528)
T PRK07470 236 LPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKL-GKVLVQYFGL 314 (528)
T ss_pred ecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCCcceEEEEEcCCCCCHHHHHHHHHHh-CcHHHHhCCC
Confidence 64 57899999999999999999999999999887666666789999999999999999999998888 7889999999
Q ss_pred cccccccccccCC------CCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCC
Q 012774 343 TESTAGVFRTVGP------DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP 416 (456)
Q Consensus 343 tE~~~~~~~~~~~------~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~ 416 (456)
||+++.+...... ......+++|.|+++++++++| +++++++.|+.|||+++|+.++.||+++++.+.+.| .
T Consensus 315 TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~-~ 392 (528)
T PRK07470 315 GEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQD-DEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF-R 392 (528)
T ss_pred cccCCceeecchhhccccccccceeeccCcccCCcEEEEEC-CCCCCCCCCCceEEEEeCCccchhhcCCHHHHHhhh-c
Confidence 9998765432110 0122457899999999999999 678899999999999999999999999999998887 5
Q ss_pred CCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 417 DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 417 ~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+|||+|||+|++++||++++.||.||+||++|++|+|.||
T Consensus 393 ~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~I 432 (528)
T PRK07470 393 DGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREI 432 (528)
T ss_pred CCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHH
Confidence 8999999999999999999999999999999999999764
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-57 Score=460.98 Aligned_cols=411 Identities=24% Similarity=0.388 Sum_probs=339.0
Q ss_pred CCCCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHH
Q 012774 35 DAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS 114 (456)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la 114 (456)
..+.++.+++...++++ |+++|+++. +..+||+||.++++++|..|.+ .|+++||+|+++++|+++++++++|
T Consensus 20 ~~~~~i~~~l~~~a~~~----p~~~a~~~~--~~~lTy~~l~~~~~~~a~~L~~-~gi~~gd~V~i~~~n~~~~~~~~la 92 (557)
T PRK07059 20 SQYPSLADLLEESFRQY----ADRPAFICM--GKAITYGELDELSRALAAWLQS-RGLAKGARVAIMMPNVLQYPVAIAA 92 (557)
T ss_pred CCCCCHHHHHHHHHHHc----CCCceEEEc--CceeeHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHH
Confidence 44468999999999999 999999987 7899999999999999999999 8999999999999999999999999
Q ss_pred HHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc----CCe-EEEEcCC--------------------
Q 012774 115 LLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHR-TILIDSP-------------------- 169 (456)
Q Consensus 115 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~-~~~~~~~-------------------- 169 (456)
|+++|++++|++|..+.+++.++++.++++++++++.....+... ... +++....
T Consensus 93 ~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (557)
T PRK07059 93 VLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRVKKM 172 (557)
T ss_pred HHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcccCCceeEEeccccccccccccccccccccccc
Confidence 999999999999999999999999999999999987765443321 111 1111100
Q ss_pred ----------chhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCC---C---CCC
Q 012774 170 ----------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP---K---RVS 233 (456)
Q Consensus 170 ----------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~---~---~~~ 233 (456)
.+.+...... ..........++++++++|||||||.||+|+++|.++..++........ . ...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~ 251 (557)
T PRK07059 173 VPAWSLPGHVRFNDALAEGA-RQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPD 251 (557)
T ss_pred ccccCCCCcccHHHHhhccC-CCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCC
Confidence 0111111110 0011123356789999999999999999999999999876543322110 1 123
Q ss_pred CcEEEEecchhhHhhH-HHHHHHhHhcceEEEec-CCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceE
Q 012774 234 PAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLET 311 (456)
Q Consensus 234 ~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~ 311 (456)
...+++.+|++|.+++ ...+.++..|++.++.+ ..++..+++.++++++|.+.++|+++..+.........+++++|.
T Consensus 252 ~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~ 331 (557)
T PRK07059 252 QLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIV 331 (557)
T ss_pred CcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheE
Confidence 4577888999999887 55667788888877665 458899999999999999999999999998876655667889999
Q ss_pred EEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcce
Q 012774 312 VACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGE 391 (456)
Q Consensus 312 v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Ge 391 (456)
++.||+++++.+.++|.+.+ ++++++.||+||++.++..... ......+++|.|+++++++|+| +++.+++.|+.||
T Consensus 332 ~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~vG~p~~g~~v~i~d-~~~~~~~~g~~Ge 408 (557)
T PRK07059 332 ANGGGMAVQRPVAERWLEMT-GCPITEGYGLSETSPVATCNPV-DATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEPGE 408 (557)
T ss_pred EEeccccCCHHHHHHHHHHh-CCCeeeccccccccchhhcCCC-CCCCcCCcccCccCCcEEEEEC-CCCCCCCCCCceE
Confidence 99999999999999999987 8999999999999887654322 2223457899999999999999 6789999999999
Q ss_pred EEEecCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 392 LSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 392 l~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|+++|+.++.||+++++.+.+.|..+|||+|||+|++++||++++.||.+|+||++|++|+|.|+
T Consensus 409 l~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~i 473 (557)
T PRK07059 409 ICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEI 473 (557)
T ss_pred EEEeCCccchhhhcCHHHHhhhcccCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHH
Confidence 99999999999999999999888789999999999999999999999999999999999999764
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-58 Score=551.16 Aligned_cols=404 Identities=21% Similarity=0.279 Sum_probs=351.0
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.++++++.+.++++ |+++|+++. ++++||+||.++++++|+.|.+ .|+++|++|+++++|+++++++++||++
T Consensus 511 ~~~~~~~~~~a~~~----p~~~A~~~~--~~~~TY~eL~~~~~~lA~~L~~-~gv~~g~~V~l~~~~s~~~i~~~la~~~ 583 (5163)
T PRK12316 511 RGVHRLFEEQVERT----PEAPALAFG--EETLDYAELNRRANRLAHALIE-RGVGPDVLVGVAMERSIEMVVALLAILK 583 (5163)
T ss_pred CCHHHHHHHHHHHC----CCCeEEEeC--CceEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 58999999999999 999999987 7899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-CCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEE
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-KHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 196 (456)
+|++++|++|.++.+++.+++++++++++|++......+... ...++.++... ...... ..........++++++
T Consensus 584 aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~a~ 659 (5163)
T PRK12316 584 AGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPLAAGVQVLDLDRPA--AWLEGY--SEENPGTELNPENLAY 659 (5163)
T ss_pred cCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCcccCceEEEecCcc--hhhccC--CCCCCCCCCCCCCeEE
Confidence 999999999999999999999999999999998765554322 23344443211 111111 1112223456789999
Q ss_pred EEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEec---CCCHHHH
Q 012774 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ---RFDLKMM 273 (456)
Q Consensus 197 i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~---~~~~~~~ 273 (456)
++|||||||.||||+++|+++.+.+......+ +...++++++.+|++|..++..++.++..|+++++.+ .+++..+
T Consensus 660 ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~~~ 738 (5163)
T PRK12316 660 VIYTSGSTGKPKGAGNRHRALSNRLCWMQQAY-GLGVGDTVLQKTPFSFDVSVWEFFWPLMSGARLVVAAPGDHRDPAKL 738 (5163)
T ss_pred EEECCCcCCCCCEeeEcCHHHHHHHHHHHHhc-CCCCCCEEEeeCCeehHHHHHHHHHHHhCCCEEEECCccccCCHHHH
Confidence 99999999999999999999999998888877 6888999999999999999999999999999999985 4789999
Q ss_pred HHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCcccccccccccc
Q 012774 274 LKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353 (456)
Q Consensus 274 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~ 353 (456)
++.|+++++|++.++|+++..|.+... ...++++|.+++|||++++++.+.|.+.+++.++++.||+||++..++...
T Consensus 739 ~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~ 816 (5163)
T PRK12316 739 VELINREGVDTLHFVPSMLQAFLQDED--VASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWT 816 (5163)
T ss_pred HHHHHHcCCeEEEeCHHHHHHHHhccc--cccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEe
Confidence 999999999999999999999987532 335789999999999999999999998888899999999999986554433
Q ss_pred CCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCC------CCeeeccceEE
Q 012774 354 GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP------DGWMRTGDLCY 427 (456)
Q Consensus 354 ~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~------~g~~~TGDl~~ 427 (456)
.........++|+|++|++++|+| +++++++.|+.|||+|+|+++++||+++++.|++.|.. ++||+|||+|+
T Consensus 817 ~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~ 895 (5163)
T PRK12316 817 CVEEGGDSVPIGRPIANLACYILD-ANLEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLAR 895 (5163)
T ss_pred cccccCCCCCCccccCCCEEEEEC-CCCCCCCCCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEE
Confidence 222333456899999999999999 67899999999999999999999999999999998843 35999999999
Q ss_pred EccCCcEEEecccccceeeCCeeecCCCC
Q 012774 428 IDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 428 ~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+++||+|+|+||+||+||++|+||+|.||
T Consensus 896 ~~~dG~l~~~GR~d~~ik~~G~rI~~~EI 924 (5163)
T PRK12316 896 YRADGVIEYAGRIDHQVKLRGLRIELGEI 924 (5163)
T ss_pred ECCCCCEEeecccCCEEEEceEEcChHHH
Confidence 99999999999999999999999999885
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=456.16 Aligned_cols=392 Identities=26% Similarity=0.400 Sum_probs=326.9
Q ss_pred cccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecCC
Q 012774 47 LRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126 (456)
Q Consensus 47 ~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~~G~~~v~l~ 126 (456)
+++.+ ||++|+.+...++.+||+||.++++++|+.|.+ .|+.+||+|+++++|+++++++++||+++|++++|++
T Consensus 4 ~a~~~----p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~-~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~ 78 (488)
T PRK09088 4 HARLQ----PQRLAAVDLALGRRWTYAELDALVGRLAAVLRR-RGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLN 78 (488)
T ss_pred hhhhC----CCceEEEecCCCcEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeC
Confidence 34555 999999875457899999999999999999998 8999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhhhcCCeEEEEccchHHHHhccCCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCC
Q 012774 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGR 206 (456)
Q Consensus 127 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~ 206 (456)
+..+.+++.++++.++++++|+++...... ...+ .++.+.................+++++++|||||||.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~ 149 (488)
T PRK09088 79 WRLSASELDALLQDAEPRLLLGDDAVAAGR----TDVE-----DLAAFIASADALEPADTPSIPPERVSLILFTSGTSGQ 149 (488)
T ss_pred ccCCHHHHHHHHHhCCCCEEEEcchhhccc----cccc-----chhhhhhhccccccccCCCCCCCCceEEEeCCCCCCC
Confidence 999999999999999999999987543211 1111 1111111111010111223456789999999999999
Q ss_pred CchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhH-HHHHHHhHhcceEEEecCCCHHHHHHHHHH--hcce
Q 012774 207 VKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEE--FRVT 283 (456)
Q Consensus 207 PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~--~~~t 283 (456)
||+|.++|+++........... .....+++++.+|++|.+++ ..++.++..|+++++.+.+++..++..+.+ +++|
T Consensus 150 PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t 228 (488)
T PRK09088 150 PKGVMLSERNLQQTAHNFGVLG-RVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGIT 228 (488)
T ss_pred CcEEEEehHHHHHHHHHHHHhh-CCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHhhccCCc
Confidence 9999999999987766555544 46788999999999999998 456678888999998888899999998864 8999
Q ss_pred eEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccCC-CCCCCCC
Q 012774 284 HAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGP-DECRRWG 362 (456)
Q Consensus 284 ~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~-~~~~~~~ 362 (456)
+++++|.++..+.+........++++|.+++||++++.+..+.+.+. +.++++.||+||++.+....... ....+.+
T Consensus 229 ~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~--g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~ 306 (488)
T PRK09088 229 HYFCVPQMAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDD--GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAG 306 (488)
T ss_pred EEeeHHHHHHHHHhCcCcCccccccceEEEecCCCCCHHHHHHHHHh--CCceeeeecccccccccccCCCcccccccCC
Confidence 99999999999987655455567899999999999999998888865 78999999999998754322111 1123557
Q ss_pred ccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEeccccc
Q 012774 363 STGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKD 442 (456)
Q Consensus 363 ~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d 442 (456)
++|.|.++++++|+| +++..++.|+.|||+++|++++.||+++++.+.+.++.+|||+|||+|++|++|++++.||.||
T Consensus 307 ~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d 385 (488)
T PRK09088 307 AAGIPTPTVQTRVVD-DQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKD 385 (488)
T ss_pred ccccCCCCcEEEEEC-CCCCCCcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccc
Confidence 899999999999999 6788899999999999999999999999999998887899999999999999999999999999
Q ss_pred ceeeCCeeecCCCC
Q 012774 443 LIKYKGYQVLPLLN 456 (456)
Q Consensus 443 ~ik~~G~~v~p~e~ 456 (456)
+||++|++|+|.|+
T Consensus 386 ~i~~~G~~i~~~~i 399 (488)
T PRK09088 386 MFISGGENVYPAEI 399 (488)
T ss_pred eEEeCCEEECHHHH
Confidence 99999999999764
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-57 Score=469.15 Aligned_cols=413 Identities=18% Similarity=0.234 Sum_probs=326.0
Q ss_pred CCCCCHHHHhhhcc-cCCCCCCCCCcEEEECCCC------ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCc
Q 012774 35 DAPISAVDYVSSLR-ATLPWRDDDTVALINSVTG------LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIE 107 (456)
Q Consensus 35 ~~~~~~~~~l~~~~-~~~~~~~p~~~A~~~~~~~------~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~ 107 (456)
.+.+|+.+.+.++. .+. |+++|+++.+++ +++||+||.++++++|+.|++ +|+++||+|+++++|+++
T Consensus 171 g~~ln~~~~~l~~~~~~~----pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~GdrVai~~pn~~e 245 (728)
T PLN03052 171 GAVLNVAECCLTPKPSKT----DDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDA-LGFEKGDAIAIDMPMNVH 245 (728)
T ss_pred CCEeEHHHHHHHHHhccC----CCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHH
Confidence 56678877666543 456 999999876332 489999999999999999998 999999999999999999
Q ss_pred HHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHH---------HHhc-cCCeEEEEc----------
Q 012774 108 IPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH---------KLAK-LKHRTILID---------- 167 (456)
Q Consensus 108 ~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~-~~~~~~~~~---------- 167 (456)
++++++||+++|++++|+++.++.+++.+++++++++++|+++.... .+.. ....++++.
T Consensus 246 ~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~ 325 (728)
T PLN03052 246 AVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIVLPADGKSVRVKL 325 (728)
T ss_pred HHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCCcEEEEeCCCCcccccc
Confidence 99999999999999999999999999999999999999999875421 1111 111222222
Q ss_pred ---CCchhhhhcccCC---CccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEec
Q 012774 168 ---SPEFDSMTMSWNS---KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTM 241 (456)
Q Consensus 168 ---~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~ 241 (456)
...|+++...... ...........+++++|+|||||||.||+|+++|.+++.........+ ...++|++++..
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~-~l~~~d~~~~~~ 404 (728)
T PLN03052 326 REGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHL-DIRKGDIVCWPT 404 (728)
T ss_pred ccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhc-CCCCCcEEEECC
Confidence 1123333222110 001111123458999999999999999999999999876655544444 577889999999
Q ss_pred chhhHhhHHHHHHHhHhcceEEEecC-CCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCC
Q 012774 242 PYFHIYGLFFCFRAAALMETAVVMQR-FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLG 320 (456)
Q Consensus 242 p~~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~ 320 (456)
++.|+.+...++.++..|+++++.+. .++..+++.++++++|++.++|+++..|.+.......+++++|.+++||++++
T Consensus 405 ~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dlssLr~i~s~Ge~l~ 484 (728)
T PLN03052 405 NLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGSTGEASS 484 (728)
T ss_pred CcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCChhheeEEEecCCCCC
Confidence 99999998778899999999999874 46678999999999999999999999998875455678899999999999999
Q ss_pred HHHHHHHHHhCCCCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCC--cceEEEecCC
Q 012774 321 KDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGK--EGELSIRGPT 398 (456)
Q Consensus 321 ~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~--~Gel~i~g~~ 398 (456)
++...++.+.++..++++.||+||++++..... .......+++|.|.+|++++|+| ++|++++.|+ .|||+++++.
T Consensus 485 ~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~-~~~~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~ 562 (728)
T PLN03052 485 VDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGS-LLQPQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPLM 562 (728)
T ss_pred HHHHHHHHHhcCCCCeEeeccChhhCcccccCC-CCCCCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCC
Confidence 999888888764468999999999976544321 11223467899999999999999 7899999885 6999998753
Q ss_pred c--ccccCCCccccccccC------CCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 399 I--MKGYVGEPEVTSATLL------PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 399 ~--~~gy~~~~~~~~~~~~------~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
. ..+|++++. ....|. ...||+|||++++|+||+++|+||.||+||++|+||+|.||
T Consensus 563 ~~~~~~~~~~~~-~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EI 627 (728)
T PLN03052 563 FGASSTLLNADH-YKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEI 627 (728)
T ss_pred CCCCccccCchh-hhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHH
Confidence 2 346666532 222231 12399999999999999999999999999999999999885
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-57 Score=462.73 Aligned_cols=410 Identities=30% Similarity=0.447 Sum_probs=334.7
Q ss_pred CCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
..++.+++...++.+ |+++|+++. ++++||.||.++++++|+.|.++.|+++||+|+++++|+++++++++||+
T Consensus 23 ~~~~~~~l~~~~~~~----p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~ 96 (562)
T PRK12492 23 YKSVVEVFERSCKKF----ADRPAFSNL--GVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGAL 96 (562)
T ss_pred cCcHHHHHHHHHHhC----CCCeeEecC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 368999999999988 999999876 78999999999999999999873499999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc----CCeEEE-Ec------------------------
Q 012774 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHRTIL-ID------------------------ 167 (456)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~-~~------------------------ 167 (456)
++|++++|+++..+.+++.++++.++++++++++.....+... ....+. ..
T Consensus 97 ~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (562)
T PRK12492 97 RAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMV 176 (562)
T ss_pred HcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhccCceEEEeechhhccccccchhcccccccccccc
Confidence 9999999999999999999999999999999976543332211 111000 00
Q ss_pred -------CCchhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCC--C------CC
Q 012774 168 -------SPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP--K------RV 232 (456)
Q Consensus 168 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~--~------~~ 232 (456)
...++++..... ...........+++++++|||||||.||+|+++|+++..++......+. . ..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~ 255 (562)
T PRK12492 177 PAYHLPQAVPFKQALRQGR-GLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMK 255 (562)
T ss_pred cccCCcccccHHHHHhccC-CCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhccccccccccc
Confidence 000111111100 0011112345678999999999999999999999999776654433221 0 12
Q ss_pred C-CcEEEEecchhhHhhH-HHHHHHhHhcceEEEec-CCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCc
Q 012774 233 S-PAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSL 309 (456)
Q Consensus 233 ~-~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~l 309 (456)
. .+++++.+|++|.+++ ..++..+..|+..++.. .+++..+++.++++++|++.++|+++..+.+.......+++++
T Consensus 256 ~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l 335 (562)
T PRK12492 256 EGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSAL 335 (562)
T ss_pred CCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccce
Confidence 2 3577899999999998 44556677888766653 5689999999999999999999999999988766556678899
Q ss_pred eEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCc
Q 012774 310 ETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKE 389 (456)
Q Consensus 310 r~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~ 389 (456)
|.+++||+++++++.+.|.+.+ ++++++.||+||++.+++.... ......+++|+|+++++++|+| +++.+++.|+.
T Consensus 336 r~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~~G~p~~~~~v~ivd-~~~~~~~~g~~ 412 (562)
T PRK12492 336 KLTNSGGTALVKATAERWEQLT-GCTIVEGYGLTETSPVASTNPY-GELARLGTVGIPVPGTALKVID-DDGNELPLGER 412 (562)
T ss_pred eEEEeccccCCHHHHHHHHHHh-CCceeeccCccccCceeeecCC-cccccCCccceecCCCEEEEEC-CCCCCCCCCCc
Confidence 9999999999999999999887 8999999999999876654322 2233457899999999999999 67889999999
Q ss_pred ceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 390 GELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 390 Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|||+++|+.++.||+++++.+.+.|..+|||+|||+|+++++|+++|.||.||+||++|++|+|.|+
T Consensus 413 Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eI 479 (562)
T PRK12492 413 GELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEI 479 (562)
T ss_pred eEEEEeCCccccccccCchhhhhcccCCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHH
Confidence 9999999999999999999999988778999999999999999999999999999999999999874
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-58 Score=502.58 Aligned_cols=411 Identities=26% Similarity=0.354 Sum_probs=347.2
Q ss_pred CCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
..++.+.+.+.++++ |+++|+++. .++++||+||.++++++|+.|.+ ++++||+|+++++|+++++++++||+
T Consensus 614 ~~~l~~~~~~~a~~~----p~~~a~~~~-~~~~~Ty~el~~~~~~~a~~L~~--~~~~g~~V~i~~~n~~~~~~~~la~~ 686 (1146)
T PRK08633 614 LPPLAEAWIDTAKRN----WSRLAVADS-TGGELSYGKALTGALALARLLKR--ELKDEENVGILLPPSVAGALANLALL 686 (1146)
T ss_pred CCCHHHHHHHHHHhc----CCCcEEEcC-CCCcCcHHHHHHHHHHHHHHHHH--hCCCCCeEEEECCCchHHHHHHHHHH
Confidence 368899999999998 999999874 35799999999999999999987 47999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhc------c--CCeEEEEcCC-----c---hhhhhcccCC
Q 012774 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK------L--KHRTILIDSP-----E---FDSMTMSWNS 180 (456)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~------~--~~~~~~~~~~-----~---~~~~~~~~~~ 180 (456)
++|++++|+++..+.+++.++++++++++++++++..+.+.. . ..+++..+.. . +.........
T Consensus 687 ~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1146)
T PRK08633 687 LAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKISKVDKLTALLAARLL 766 (1146)
T ss_pred HcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccchhHHHHHHHHhccC
Confidence 999999999999999999999999999999999877766542 1 1123332211 0 1111000000
Q ss_pred Cc----cccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHH-HHHHH
Q 012774 181 KH----ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF-FCFRA 255 (456)
Q Consensus 181 ~~----~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~-~~~~~ 255 (456)
.. ........++++++++|||||||.||+|.++|+++..+.......+ ...++|++++.+|++|.+++. .++.+
T Consensus 767 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~ 845 (1146)
T PRK08633 767 PARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-NLRNDDVILSSLPFFHSFGLTVTLWLP 845 (1146)
T ss_pred CHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhc-CCCCCCEEEEcCcHHHHHhHHHHHHHH
Confidence 00 0001345678999999999999999999999999998888776666 577889999999999999984 47889
Q ss_pred hHhcceEEEec-CCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCC
Q 012774 256 AALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKV 334 (456)
Q Consensus 256 l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~ 334 (456)
+..|+++++.+ .+++..+++.++++++|++.++|++++.+.+.....+.+++++|.+++||+++++++.+.+++.+ +.
T Consensus 846 l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-g~ 924 (1146)
T PRK08633 846 LLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKF-GI 924 (1146)
T ss_pred HHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCCCeeeEEEcCCcCCHHHHHHHHHHh-CC
Confidence 99999998876 47999999999999999999999999999887666666789999999999999999999999988 89
Q ss_pred ceEeccCccccccccccccCCC--------CCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCC
Q 012774 335 VLVQAYGLTESTAGVFRTVGPD--------ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGE 406 (456)
Q Consensus 335 ~i~~~yG~tE~~~~~~~~~~~~--------~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~ 406 (456)
++++.||+||++.+++...... ...+.+++|+|+||++++|+|+++++++++|+.|||+++|+.++.||+++
T Consensus 925 ~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~ 1004 (1146)
T PRK08633 925 RILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGD 1004 (1146)
T ss_pred CeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCCCceEEEEcCCCccccccCC
Confidence 9999999999987665432111 11346789999999999999988899999999999999999999999999
Q ss_pred ccccccccCC---CCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 407 PEVTSATLLP---DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 407 ~~~~~~~~~~---~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
++.+.+.+.. +|||+|||+|++|+||++++.||.||+||++|++|+|.|+
T Consensus 1005 ~~~t~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~ei 1057 (1146)
T PRK08633 1005 PEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAV 1057 (1146)
T ss_pred ccchHHHhhcCCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHH
Confidence 9999888742 2899999999999999999999999999999999999874
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-57 Score=462.90 Aligned_cols=406 Identities=26% Similarity=0.376 Sum_probs=324.8
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.++.+++.+.++.+ |+++|+++. +.++||+||.++++++|+.|.+ +|+++||+|+|+++|++++++++|||++
T Consensus 14 ~~~~~~l~~~~~~~----p~~~Al~~~--~~~~Ty~eL~~~~~~~a~~L~~-~Gl~~gd~Vai~~~n~~e~~~~~la~~~ 86 (579)
T PLN03102 14 LTPITFLKRASECY----PNRTSIIYG--KTRFTWPQTYDRCCRLAASLIS-LNITKNDVVSVLAPNTPAMYEMHFAVPM 86 (579)
T ss_pred ccHHHHHHHHHHhC----CCCeEEEEC--CcEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHHh
Confidence 57888998888888 999999987 7899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-----------CCeEEEEcCC-----------chhhhh
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----------KHRTILIDSP-----------EFDSMT 175 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----------~~~~~~~~~~-----------~~~~~~ 175 (456)
+|++++|+++..+.+++.++++.++++++|++++....+.+. ..+++.++.. ++..+.
T Consensus 87 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (579)
T PLN03102 87 AGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSSEELDYECLI 166 (579)
T ss_pred cCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccCCcccccCHHHHH
Confidence 999999999999999999999999999999987765544321 1234444321 122221
Q ss_pred cccCCCccc---cccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHH
Q 012774 176 MSWNSKHEL---DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFC 252 (456)
Q Consensus 176 ~~~~~~~~~---~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~ 252 (456)
......... .......+++++++|||||||.||+|+++|+++........... .....+++++.+|++|..++...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~~~~l~~~pl~h~~g~~~~ 245 (579)
T PLN03102 167 QRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGW-EMGTCPVYLWTLPMFHCNGWTFT 245 (579)
T ss_pred hccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhc-CCCCCCeEEecCChhhhcchhHH
Confidence 111100000 00123568899999999999999999999999754443333333 34567789999999999998777
Q ss_pred HHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCC
Q 012774 253 FRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFP 332 (456)
Q Consensus 253 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~ 332 (456)
+.++..|+++++.+.+++..+++.|+++++|+++++|+++..|.+.........++++.+++||+++++.+.+.+++ +
T Consensus 246 ~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~-~- 323 (579)
T PLN03102 246 WGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQR-L- 323 (579)
T ss_pred HHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccceEEEECCCCCCHHHHHHHHH-c-
Confidence 88889999999998889999999999999999999999999998875444444567889999999999999999876 4
Q ss_pred CCceEeccCccccccccccccCCCC------------CCCCCccccccCCcEEEEEcCCCCCCCCC--CCcceEEEecCC
Q 012774 333 KVVLVQAYGLTESTAGVFRTVGPDE------------CRRWGSTGRLSAGLEAKIVDPETGDSLPP--GKEGELSIRGPT 398 (456)
Q Consensus 333 ~~~i~~~yG~tE~~~~~~~~~~~~~------------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~--g~~Gel~i~g~~ 398 (456)
+.++++.||+||+++.+........ ....+..+.+++ .+++++.+.++.++. ++.|||+++|++
T Consensus 324 g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~v~i~~~~~~~~v~~~~~~~GEl~v~g~~ 401 (579)
T PLN03102 324 GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLA--DVDVKNKETQESVPRDGKTMGEIVIKGSS 401 (579)
T ss_pred CCeEEeecCccccCccccccccccccccCCcccccccccCCCccccccc--ceEEeccccccccCCCCCCceEEEEECcc
Confidence 8899999999999865443211100 011223333444 455666566777764 367999999999
Q ss_pred cccccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 399 IMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 399 ~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
++.||+++++.+.+.| .+|||+|||+|++|+||++++.||.||+||++|++|+|.|+
T Consensus 402 ~~~GY~~~~~~t~~~f-~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eI 458 (579)
T PLN03102 402 IMKGYLKNPKATSEAF-KHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEV 458 (579)
T ss_pred hhhhhcCChhhhHhhh-ccCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHH
Confidence 9999999999999988 58999999999999999999999999999999999999874
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-57 Score=459.09 Aligned_cols=407 Identities=33% Similarity=0.486 Sum_probs=353.2
Q ss_pred CCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
+.+++++|.+.++.+ |+++|+.+. ++.+||+||.++++++|+.|.+ .|+++|++|+++++|+++++++++||+
T Consensus 5 ~~~l~~~l~~~~~~~----p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~-~g~~~~~~V~l~~~~~~~~~~~~la~~ 77 (521)
T PRK06187 5 PLTIGRILRHGARKH----PDKEAVYFD--GRRTTYAELDERVNRLANALRA-LGVKKGDRVAVFDWNSHEYLEAYFAVP 77 (521)
T ss_pred cCCHHHHHHHHHHHC----CCceEEEeC--CceEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 379999999999999 999999998 7789999999999999999998 899999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc----C-C-eEEEEcCC----------chhhhhcccCC
Q 012774 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----K-H-RTILIDSP----------EFDSMTMSWNS 180 (456)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~-~-~~~~~~~~----------~~~~~~~~~~~ 180 (456)
++|++++|+++..+.+++..+++.+++++++++.+..+.+.+. . . .++.++.. .+.++......
T Consensus 78 ~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (521)
T PRK06187 78 KIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEYEELLAAASD 157 (521)
T ss_pred HcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCccccccccccccHHHHhhcCCc
Confidence 9999999999999999999999999999999998876665432 1 1 23333221 23333222111
Q ss_pred CccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcc
Q 012774 181 KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALME 260 (456)
Q Consensus 181 ~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~ 260 (456)
.........+++++++|||||||.||+|.++|+++..........+ +...++++++.+|++|.+++...+.++..|+
T Consensus 158 --~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~ 234 (521)
T PRK06187 158 --TFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL-KLSRDDVYLVIVPMFHVHAWGLPYLALMAGA 234 (521)
T ss_pred --cCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhh-CCCCCCEEEEeCCchHHhhHHHHHHHHHhCC
Confidence 1122345668899999999999999999999999998887777766 7889999999999999999877777999999
Q ss_pred eEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEecc
Q 012774 261 TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAY 340 (456)
Q Consensus 261 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~y 340 (456)
++++.+.+++..+++.++++++|+++++|+++..|.+.......+++++|.+++||+++++++++.+.+.+ ++++++.|
T Consensus 235 ~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~-~~~v~~~Y 313 (521)
T PRK06187 235 KQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKF-GIDLVQGY 313 (521)
T ss_pred EEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcchhhEEEEcCcCCCHHHHHHHHHHh-Ccchheee
Confidence 99999888999999999999999999999999999998776667789999999999999999999999998 89999999
Q ss_pred CccccccccccccCCCC----CCCCCccccccCCcEEEEEcCCCCCCCCC--CCcceEEEecCCcccccCCCcccccccc
Q 012774 341 GLTESTAGVFRTVGPDE----CRRWGSTGRLSAGLEAKIVDPETGDSLPP--GKEGELSIRGPTIMKGYVGEPEVTSATL 414 (456)
Q Consensus 341 G~tE~~~~~~~~~~~~~----~~~~~~~G~~~~~~~~~i~d~~~~~~~~~--g~~Gel~i~g~~~~~gy~~~~~~~~~~~ 414 (456)
|+||++.++........ ....+++|+|++++.++|+| +++.+++. |+.|||+++|+.++.||+++++.+.+.|
T Consensus 314 G~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~ 392 (521)
T PRK06187 314 GMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETI 392 (521)
T ss_pred ccCccCcccccCCcccccccccccCCccccccCCeEEEEEC-CCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHh
Confidence 99999876665332211 12567899999999999999 56778888 9999999999999999999999888888
Q ss_pred CCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 415 LPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 415 ~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
.++||+|||+++++++|++++.||.||+||++|.+|+|.++
T Consensus 393 -~~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~I 433 (521)
T PRK06187 393 -DGGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPREL 433 (521)
T ss_pred -hCCceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHH
Confidence 57899999999999999999999999999999999999763
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-58 Score=476.70 Aligned_cols=401 Identities=21% Similarity=0.294 Sum_probs=324.0
Q ss_pred CCHHHHhhhcccCCCCCCCC-CcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDD-TVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~-~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
.|+.+++.+.++++ |+ ++|+.+. ..+++||+||.++++++|+.|.+ . +++||+|+++++|++++++++|||+
T Consensus 204 ~t~~~~l~~~~~~~----p~~~~a~~~~-~~~~~Ty~el~~~~~~lA~~L~~-~-~~~gd~Val~~~n~~e~~~~~lA~~ 276 (718)
T PRK08043 204 ETLYEALLSAQYRY----GAGKPCIEDV-NFTPDSYRKLLKKTLFVGRILEK-Y-SVEGERIGLMLPNATISAAVIFGAS 276 (718)
T ss_pred CCHHHHHHHHHHHh----CCCCcceEcC-CCCcccHHHHHHHHHHHHHHHHH-h-cCCCceEEEEcCCcHHHHHHHHHHH
Confidence 68999999999999 87 5787753 24789999999999999999988 5 5999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHh--cc-----CCeEEEEcCC----chhhh-h-cccCCCcc
Q 012774 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLA--KL-----KHRTILIDSP----EFDSM-T-MSWNSKHE 183 (456)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~--~~-----~~~~~~~~~~----~~~~~-~-~~~~~~~~ 183 (456)
++|++++|+++.++.+++++++++++++++|++++..+... .. ....+.++.. .+... . ........
T Consensus 277 ~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (718)
T PRK08043 277 LRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDLKDDVTTADKLWIFAHLLMPR 356 (718)
T ss_pred HcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEEEhhhhhhhcchhHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999876654311 00 1122222211 00000 0 00000000
Q ss_pred ccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhH-HHHHHHhHhcceE
Q 012774 184 LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETA 262 (456)
Q Consensus 184 ~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~ 262 (456)
.......++++++++|||||||.||+|+++|+++..........+ +...+|++++.+|++|.+++ ..++.++..|+++
T Consensus 357 ~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~v 435 (718)
T PRK08043 357 LAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-DFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEV 435 (718)
T ss_pred cccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhh-CCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEE
Confidence 111234568999999999999999999999999998877766655 67889999999999999998 5577899999999
Q ss_pred EEecC-CCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccC
Q 012774 263 VVMQR-FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYG 341 (456)
Q Consensus 263 ~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG 341 (456)
++.+. +++..+++.++++++|+++++|+++..+.+.. ...+++++|.+++||+++++++.+.|++.+ ++++++.||
T Consensus 436 v~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~-g~~l~~~YG 512 (718)
T PRK08043 436 FLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NPYDFARLRYVVAGAEKLQESTKQLWQDKF-GLRILEGYG 512 (718)
T ss_pred EEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--CcccccceEEEEEeCccCCHHHHHHHHHHc-CCCeecccC
Confidence 98864 57788899999999999999999998876642 234678999999999999999999999988 899999999
Q ss_pred ccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCC--ccc-------ccc
Q 012774 342 LTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGE--PEV-------TSA 412 (456)
Q Consensus 342 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~--~~~-------~~~ 412 (456)
+||++.+++... ....+.+++|+|+||++++|+|+ ++. ++.|||+++|+.++.||+++ ++. +.+
T Consensus 513 ~TE~~~~~~~~~--~~~~~~~svG~p~pg~~~~i~d~-~~~----~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~ 585 (718)
T PRK08043 513 VTECAPVVSINV--PMAAKPGTVGRILPGMDARLLSV-PGI----EQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENAR 585 (718)
T ss_pred cccccceEEecC--CcccCCCCCCCcCCCCeeEEecC-CCC----CCceEEEEecCCccccccCCCCccccccccccccc
Confidence 999987665422 22335689999999999999984 332 45699999999999999983 432 222
Q ss_pred ccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 413 TLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 413 ~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
.+..+|||+|||+|++|+||++++.||.||+||++|++|+|.|+
T Consensus 586 ~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eI 629 (718)
T PRK08043 586 GEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMV 629 (718)
T ss_pred ccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHH
Confidence 23357999999999999999999999999999999999999874
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-57 Score=467.57 Aligned_cols=409 Identities=20% Similarity=0.188 Sum_probs=325.6
Q ss_pred CCCCCHHHHhhhcccCCCCCCCCCcEEEECCC---CceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHH
Q 012774 35 DAPISAVDYVSSLRATLPWRDDDTVALINSVT---GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPIL 111 (456)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~---~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~ 111 (456)
++.+|+.+.+.++ .+ |+++|+++... .+++||+||.++++++|+.|.+ .|+++||+|+++++|+++++++
T Consensus 83 ~~~~n~~~~~~~~--~~----~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~v~~ 155 (655)
T PRK03584 83 GARLNYAENLLRH--RR----DDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRA-LGVGPGDRVAAYLPNIPETVVA 155 (655)
T ss_pred CCEeeHHHHhhcc--CC----CCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHH
Confidence 6668988888764 45 89999987522 2689999999999999999998 8999999999999999999999
Q ss_pred HHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchH---------HHHh----ccC--CeEEEEcCC-------
Q 012774 112 YFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV---------HKLA----KLK--HRTILIDSP------- 169 (456)
Q Consensus 112 ~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~----~~~--~~~~~~~~~------- 169 (456)
+|||+++|++++|+++.++.+++.++++.++++++|+++... ..+. ... ..+++++..
T Consensus 156 ~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 235 (655)
T PRK03584 156 MLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAAAAA 235 (655)
T ss_pred HHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCCccccc
Confidence 999999999999999999999999999999999999976432 1111 111 123333211
Q ss_pred ------chhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHH-HHHhccCCCCCCCCcEEEEecc
Q 012774 170 ------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAA-VASSFASSPKRVSPAVMLFTMP 242 (456)
Q Consensus 170 ------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~-~~~~~~~~~~~~~~~~~~~~~p 242 (456)
.|+++..... ...........+++++++|||||||.||+|+++|++++.+ .......+ ....+|++++..+
T Consensus 236 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d~~~~~~~ 313 (655)
T PRK03584 236 ALPGALLWEDFLAPAE-AAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHC-DLGPGDRFFWYTT 313 (655)
T ss_pred ccCCcccHHHHhhccc-cCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhc-CCCCCCEEEEcCC
Confidence 1333322111 1111223346689999999999999999999999987644 33333344 5778899999999
Q ss_pred hhhHhhHHHHHHHhHhcceEEEecC----CCHHHHHHHHHHhcceeEEecHHHHHHHhcCCC--CCCCCCCCceEEEecC
Q 012774 243 YFHIYGLFFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGA 316 (456)
Q Consensus 243 ~~~~~g~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~v~~gG 316 (456)
+.|... ..++.++..|+++++.+. +++..+++.++++++|++.++|+++..+.+... ....+++++|.+++||
T Consensus 314 ~~~~~~-~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~~G 392 (655)
T PRK03584 314 CGWMMW-NWLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRTIGSTG 392 (655)
T ss_pred chHHhH-HHHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheEEEEEec
Confidence 888754 346688999999998752 589999999999999999999999999876432 2345689999999999
Q ss_pred CCCCHHHHHHHHHhC-CCCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEe
Q 012774 317 APLGKDTIMAFASKF-PKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR 395 (456)
Q Consensus 317 ~~~~~~~~~~~~~~~-~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~ 395 (456)
+++++++.+++.+.+ +++.+.+.||+||++...... ........+++|.|.+|++++|+| ++++++ .|+.|||+|+
T Consensus 393 e~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~-~~~~~~~~g~~g~p~~g~~~~ivd-~~g~~~-~g~~GeL~v~ 469 (655)
T PRK03584 393 SPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGG-NPLLPVYRGEIQCRGLGMAVEAWD-EDGRPV-VGEVGELVCT 469 (655)
T ss_pred CCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccC-CCCCCcCCCccCCCcCCceeEEEC-CCCCCC-CCCceEEEEc
Confidence 999999999999988 468899999999986543321 112233568899999999999999 678888 7999999999
Q ss_pred cC--CcccccCCCccccc--ccc-C-CCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 396 GP--TIMKGYVGEPEVTS--ATL-L-PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 396 g~--~~~~gy~~~~~~~~--~~~-~-~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|+ +++.||+++++.+. ..+ . .+|||+|||+|++|+||+++|+||.||+||++|++|+|.||
T Consensus 470 gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EI 536 (655)
T PRK03584 470 KPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEI 536 (655)
T ss_pred cCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHH
Confidence 96 78999999987543 111 1 15789999999999999999999999999999999999885
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-58 Score=541.40 Aligned_cols=405 Identities=20% Similarity=0.299 Sum_probs=349.4
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.+++++|.+.++++ |+++|+++. ++.+||+||.++++++|+.|.+ .|+++|++|+++++++++++++++||++
T Consensus 1574 ~~~~~~~~~~a~~~----p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~~~~V~l~~~~s~~~vv~~lavlk 1646 (3956)
T PRK12467 1574 RLVHQLIEDQAAAT----PEAVALVFG--EQELTYGELNRRANRLAHRLIA-LGVGPEVLVGIAVERSLEMVVGLLAILK 1646 (3956)
T ss_pred ccHHHHHHHHHHhC----CCCeEEEeC--CcEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEccCCHHHHHHHHHhhc
Confidence 58999999999999 999999997 8899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-CCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEE
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-KHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 196 (456)
+|++++|++|.++.+++.++++++++++++++......+... ...++.++... ...... ..........+++++|
T Consensus 1647 aG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~ay 1722 (3956)
T PRK12467 1647 AGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLPDGLRSLVLDQED--DWLEGY--SDSNPAVNLAPQNLAY 1722 (3956)
T ss_pred cCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCccccCCcEEEecccc--chhccC--CCCCCCCCCCCcCcEE
Confidence 999999999999999999999999999999988766554321 23344443221 110111 1111223456789999
Q ss_pred EEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecC---CCHHHH
Q 012774 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKMM 273 (456)
Q Consensus 197 i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~---~~~~~~ 273 (456)
++|||||||.||||+++|+++.+.+......+ +...+++++...|+.|..++..++.++..|+++++.+. .++..+
T Consensus 1723 iiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~lvi~~~~~~~~~~~l 1801 (3956)
T PRK12467 1723 VIYTSGSTGRPKGAGNRHGALVNRLCATQEAY-QLSAADVVLQFTSFAFDVSVWELFWPLINGARLVIAPPGAHRDPEQL 1801 (3956)
T ss_pred EEECCCcCCCCCEEEEcCHHHHHHHHHHHHhc-CCCcccEEEEecCccHHHHHHHHHHHHhCCCEEEEcChhhcCCHHHH
Confidence 99999999999999999999999888877777 67889999999999999998889999999999999863 589999
Q ss_pred HHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCcccccccccccc
Q 012774 274 LKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353 (456)
Q Consensus 274 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~ 353 (456)
++.|+++++|++.++|+++..|.+... ....++++|.+++|||++++++.+.|.+.+++..++|.||+||++..++...
T Consensus 1802 ~~~i~~~~vt~~~~~Ps~~~~l~~~~~-~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~ 1880 (3956)
T PRK12467 1802 IQLIERQQVTTLHFVPSMLQQLLQMDE-QVEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWT 1880 (3956)
T ss_pred HHHHHHcCCeEEECCHHHHHHHHhhcc-ccccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEe
Confidence 999999999999999999999987422 2345789999999999999999999999888889999999999987665432
Q ss_pred CC---CCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCC-------CCeeecc
Q 012774 354 GP---DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP-------DGWMRTG 423 (456)
Q Consensus 354 ~~---~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~-------~g~~~TG 423 (456)
.. .......++|+|+++++++|+| +.+++++.|..|||+|+|+++++||+++|+.|++.|.. ++||+||
T Consensus 1881 ~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTG 1959 (3956)
T PRK12467 1881 CRRKDLEGRDSVPIGQPIANLSTYILD-ASLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTG 1959 (3956)
T ss_pred ccccccccCCCCCcccccCCCEEEEEC-CCCCCCCCCCceEEEeccccccccccCChhhhhhhCcCCCCCCCCccceecc
Confidence 21 1122346899999999999999 78999999999999999999999999999999998853 3499999
Q ss_pred ceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 424 DLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 424 Dl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|+|++++||.|+|+||.||+||++|+||+|.||
T Consensus 1960 Dl~~~~~dG~l~~~GR~D~qVki~G~rIel~eI 1992 (3956)
T PRK12467 1960 DLARYRADGVIEYLGRIDHQVKIRGFRIELGEI 1992 (3956)
T ss_pred ceEEECCCCCEEEecccCceEEeCeEEechHHH
Confidence 999999999999999999999999999999875
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-57 Score=456.70 Aligned_cols=397 Identities=21% Similarity=0.268 Sum_probs=331.9
Q ss_pred CCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
..|+.+.+.+.+..+ |+++|+++. +..+||+||.++++++|+.|.+ .|+++||+|+++++|++++++++|||+
T Consensus 34 ~~~~~~~~~~~a~~~----p~~~a~~~~--~~~lTy~el~~~~~~la~~L~~-~gi~~g~~V~i~~~~~~~~~~~~la~~ 106 (516)
T PRK13383 34 GTNPYTLLAVTAARW----PGRTAIIDD--DGALSYRELQRATESLARRLTR-DGVAPGRAVGVMCRNGRGFVTAVFAVG 106 (516)
T ss_pred CCcHHHHHHHHHHHC----CCCcEEEeC--CCcEeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 379999999999988 999999987 6799999999999999999998 899999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccCCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEE
Q 012774 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (456)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 196 (456)
++|++++|+++.++.+++.++++.+++++++++++....+......++.++...... .. ........++.++
T Consensus 107 ~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~p~~~~~~~~ 178 (516)
T PRK13383 107 LLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADDAVAVIDPATAGA--EE------SGGRPAVAAPGRI 178 (516)
T ss_pred HhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhcceEEeccchhhh--hc------CCCCCCCCCCCcE
Confidence 999999999999999999999999999999999887766654433344333211100 00 0011123456678
Q ss_pred EEcCCCCCCCCchhcccHHHHH--HHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecCCCHHHHH
Q 012774 197 IMYSSGTTGRVKGVMLTHRNLT--AAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMML 274 (456)
Q Consensus 197 i~~TSGtTG~PK~V~~th~~l~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~ 274 (456)
++|||||||.||+|.++|.... .......... ....+++++..+|++|.+++..++.++..|+++++...++++.++
T Consensus 179 il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~ 257 (516)
T PRK13383 179 VLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRT-RLRTGSRISVAMPMFHGLGLGMLMLTIALGGTVLTHRHFDAEAAL 257 (516)
T ss_pred EEECCCCCCCCCeeeecchhhhhhhhHHhHHhhh-ccCCCCeEEEecCCcchhhHHHHHHHHhcCCEEEECCCCCHHHHH
Confidence 9999999999999999997432 1111222233 567889999999999999998788899999999998889999999
Q ss_pred HHHHHhcceeEEecHHHHHHHhcCCCC--CCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccc
Q 012774 275 KAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352 (456)
Q Consensus 275 ~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~ 352 (456)
+.++++++|.+.++|+++..+...... ....++++|.+++||++++++++++|.+.+ +..+++.||+||++..+...
T Consensus 258 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~ 336 (516)
T PRK13383 258 AQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTY-GDILYNGYGSTEVGIGALAT 336 (516)
T ss_pred HHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHc-Cchhhhcccccccccceecc
Confidence 999999999999999999999875432 233578999999999999999999999998 78899999999998665432
Q ss_pred cCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCC
Q 012774 353 VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDG 432 (456)
Q Consensus 353 ~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg 432 (456)
. .......+++|+|+++++++|+| ++++++++|+.|||+++|+.++.||++++. ..+ .+|||+|||+|++|++|
T Consensus 337 ~-~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~Y~~~~~---~~~-~~g~~~TGDl~~~d~~G 410 (516)
T PRK13383 337 P-ADLRDAPETVGKPVAGCPVRILD-RNNRPVGPRVTGRIFVGGELAGTRYTDGGG---KAV-VDGMTSTGDMGYLDNAG 410 (516)
T ss_pred c-cccccCCCcccCCCCCcEEEEEC-CCCCCCCCCCceEEEEecCcccccccCCch---hhe-ecCceecceeEEEcCCc
Confidence 2 12223457899999999999999 678999999999999999999999998754 223 47999999999999999
Q ss_pred cEEEecccccceeeCCeeecCCCC
Q 012774 433 FLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 433 ~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
++++.||.||+||++|++|+|.|+
T Consensus 411 ~l~i~GR~~~~i~~~G~~v~~~ei 434 (516)
T PRK13383 411 RLFIVGREDDMIISGGENVYPRAV 434 (516)
T ss_pred cEEEeccccceEEECCEEECHHHH
Confidence 999999999999999999999764
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-57 Score=456.43 Aligned_cols=404 Identities=26% Similarity=0.375 Sum_probs=342.8
Q ss_pred CHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHh
Q 012774 39 SAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSL 118 (456)
Q Consensus 39 ~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~~ 118 (456)
++++.+.+.++++ |+++|+.+. ++++||+||.+++.++|+.|++ .|+++|++|+++++|+++++++++||+++
T Consensus 1 ~~~~~~~~~~~~~----p~~~a~~~~--~~~~ty~~l~~~v~~~a~~l~~-~g~~~~~~V~i~~~n~~~~~~~~lA~~~~ 73 (515)
T TIGR03098 1 LLHHLLEDAAARL----PDATALVHH--DRTLTYAALSERVLALASGLRG-LGLARGERVAIYLDKRLETVTAMFGAALA 73 (515)
T ss_pred CHHHHHHHHHHHC----CCCeEEEEC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHhc
Confidence 3678888888888 999999987 7899999999999999999998 89999999999999999999999999999
Q ss_pred CCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-----C-CeEEEEcCC-----------chhhhhcccCCC
Q 012774 119 GVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----K-HRTILIDSP-----------EFDSMTMSWNSK 181 (456)
Q Consensus 119 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~-~~~~~~~~~-----------~~~~~~~~~~~~ 181 (456)
|++++|+++..+.+++..+++.++++++++++.....+... . ..++.++.. .|+.+.....
T Consensus 74 G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 151 (515)
T TIGR03098 74 GGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHASEGGGESPSWPKLLALGD-- 151 (515)
T ss_pred CEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCcccccCCccccccHHHhhcccc--
Confidence 99999999999999999999999999999987665543221 1 123333321 2333222111
Q ss_pred ccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcce
Q 012774 182 HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMET 261 (456)
Q Consensus 182 ~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~ 261 (456)
.........++.++++|||||||.||+|.+||+++...+......+ ....++++++.+|++|.+++..++.++..|++
T Consensus 152 -~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~ 229 (515)
T TIGR03098 152 -ADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL-ENRPDDRLLAVLPLSFDYGFNQLTTAFYVGAT 229 (515)
T ss_pred -ccccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHh-CCCcccEEEEECchhhHhHHHHHHHHHHcCCE
Confidence 1112234557899999999999999999999999998887776666 57888999999999999999888999999999
Q ss_pred EEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccC
Q 012774 262 AVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYG 341 (456)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG 341 (456)
+++.+.++++.+++.++++++|++.++|+++..|.+... ....++++|.+++||+++++++.+.+++.+++..+++.||
T Consensus 230 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG 308 (515)
T TIGR03098 230 VVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW-PESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYG 308 (515)
T ss_pred EEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhccc-CCCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeec
Confidence 999988999999999999999999999999999987532 2245789999999999999999999999998899999999
Q ss_pred ccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCC-----
Q 012774 342 LTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP----- 416 (456)
Q Consensus 342 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~----- 416 (456)
+||++...... ......+.+++|+|+++++++|++ ++++.++.|+.|||+++|+.++.||+++++.+.+.|..
T Consensus 309 ~tE~~~~~~~~-~~~~~~~~~~vG~~~~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~ 386 (515)
T TIGR03098 309 LTEAFRSTYLP-PEEVDRRPDSIGKAIPNAEVLVLR-EDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRP 386 (515)
T ss_pred cccccceEecc-cccccCCCCCcceecCCCEEEEEC-CCCCCCCCCCceEEEEcCchhhccccCCchhhhhhhhccCCcc
Confidence 99987644331 222234568999999999999999 67889999999999999999999999999888766543
Q ss_pred ------CCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 417 ------DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 417 ------~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
++||+|||+|++++||++++.||.||+||++|++|+|.|+
T Consensus 387 ~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~ei 432 (515)
T TIGR03098 387 GELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEV 432 (515)
T ss_pred ccccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHH
Confidence 3489999999999999999999999999999999999874
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-57 Score=454.57 Aligned_cols=408 Identities=27% Similarity=0.379 Sum_probs=338.3
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECC---CCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSV---TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS 114 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~---~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la 114 (456)
.++++++.+.++++ |+++|+++.+ +.+.+||.||.++++++|+.|.+ +|+++||+|+++++|+++++++++|
T Consensus 7 ~~l~~~~~~~a~~~----p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~-~g~~~~~~v~i~~~n~~~~~~~~la 81 (517)
T PRK08008 7 QHLRQMWDDLADVY----GHKTALIFESSGGVVRRYSYLELNEEINRTANLFYS-LGIRKGDKVALHLDNCPEFIFCWFG 81 (517)
T ss_pred ccHHHHHHHHHHHC----CCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 58999999999999 9999998753 23789999999999999999998 8999999999999999999999999
Q ss_pred HHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc------CC-eEEEEcC--------CchhhhhcccC
Q 012774 115 LLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KH-RTILIDS--------PEFDSMTMSWN 179 (456)
Q Consensus 115 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~------~~-~~~~~~~--------~~~~~~~~~~~ 179 (456)
|+++|++++++++..+.+++.++++.+++++++++++....+.+. .. .++..+. .+++.......
T Consensus 82 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (517)
T PRK08008 82 LAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPADDGVSSFTQLKAQQP 161 (517)
T ss_pred HHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcccccccCHHHHhccCC
Confidence 999999999999999999999999999999999998766544321 11 1222221 11222211111
Q ss_pred CCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhH-HHHHHHhHh
Q 012774 180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAAL 258 (456)
Q Consensus 180 ~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~ 258 (456)
.. .........+++++++|||||||.||+|+++|+++........... ....++++++.+|++|..+. ..++.++..
T Consensus 162 ~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~ 239 (517)
T PRK08008 162 AT-LCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQC-ALRDDDVYLTVMPAFHIDCQCTAAMAAFSA 239 (517)
T ss_pred cc-ccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhc-CCCCCCeEEEecCcHHHHHHHHHHHHHHhc
Confidence 00 1112234568999999999999999999999999986543322222 45778999999999998766 567788999
Q ss_pred cceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEe
Q 012774 259 METAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ 338 (456)
Q Consensus 259 G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~ 338 (456)
|+++++.+.+++..+++.++++++|++.++|++++.++...........++|.+.++ .+++++....+.+.+ +.++++
T Consensus 240 G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~-~~~~~~ 317 (517)
T PRK08008 240 GATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFY-LNLSDQEKDAFEERF-GVRLLT 317 (517)
T ss_pred CcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccccccceeeEEe-cCCCHHHHHHHHHHh-CCeEEe
Confidence 999999999999999999999999999999999999887654433345678887775 478899999999987 899999
Q ss_pred ccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEec---CCcccccCCCccccccccC
Q 012774 339 AYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG---PTIMKGYVGEPEVTSATLL 415 (456)
Q Consensus 339 ~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g---~~~~~gy~~~~~~~~~~~~ 415 (456)
.||+||++..+.... ........++|.|+++++++|+| ++++.++.|+.|||+++| ++++.||+++++.+.+.|.
T Consensus 318 ~YG~tE~~~~~~~~~-~~~~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~ 395 (517)
T PRK08008 318 SYGMTETIVGIIGDR-PGDKRRWPSIGRPGFCYEAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLE 395 (517)
T ss_pred eccccccccccccCC-ccccccCCccccCCCCcEEEEEC-CCCCCCCCCCcceEEEeCCCCcchhhhHhCChHHHhhccc
Confidence 999999986555432 22334567899999999999999 778999999999999998 6899999999999999998
Q ss_pred CCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 416 PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 416 ~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
.+|||+|||+|++|+||++++.||.||+||++|++|+|.|+
T Consensus 396 ~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~i 436 (517)
T PRK08008 396 ADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVEL 436 (517)
T ss_pred CCCCeeccceEEECCCCcEEEeecccceEEeCCEEECHHHH
Confidence 89999999999999999999999999999999999999764
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-57 Score=457.48 Aligned_cols=413 Identities=27% Similarity=0.396 Sum_probs=340.1
Q ss_pred CCCCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHH
Q 012774 35 DAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS 114 (456)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la 114 (456)
....++.+++.+.++.+ |+++|+.+. ++.+||.||.+++.++|..|.+ .|+++|++|+++++|+++++++++|
T Consensus 30 ~~~~~l~~~l~~~a~~~----p~~~al~~~--~~~~Ty~~l~~~~~~la~~L~~-~g~~~g~~V~i~~~n~~~~~~~~lA 102 (567)
T PRK06178 30 HGERPLTEYLRAWARER----PQRPAIIFY--GHVITYAELDELSDRFAALLRQ-RGVGAGDRVAVFLPNCPQFHIVFFG 102 (567)
T ss_pred cCcccHHHHHHHHHHHC----CCceEEEEC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCcHHHHHHHH
Confidence 34479999999999998 999999987 7899999999999999999998 8999999999999999999999999
Q ss_pred HHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc----CCeEEE-EcCCc-------------------
Q 012774 115 LLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHRTIL-IDSPE------------------- 170 (456)
Q Consensus 115 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~-~~~~~------------------- 170 (456)
|+++|++++|++|..+.+++.++++.++++++++++...+.+.+. ....+. .....
T Consensus 103 ~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (567)
T PRK06178 103 ILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRL 182 (567)
T ss_pred HHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccCCcceEEEeccccccccccccccccccccccc
Confidence 999999999999999999999999999999999998877655432 111221 11000
Q ss_pred ----hhhhhcccC-CCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhh
Q 012774 171 ----FDSMTMSWN-SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFH 245 (456)
Q Consensus 171 ----~~~~~~~~~-~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 245 (456)
+.++..... ............+++++++|||||||.||+|++||+++...............+++++++.+|++|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~ 262 (567)
T PRK06178 183 AAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFW 262 (567)
T ss_pred cccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchHH
Confidence 000000000 000111223456899999999999999999999999998766544333224678899999999999
Q ss_pred HhhH-HHHHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEec--CCCCCHH
Q 012774 246 IYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACG--AAPLGKD 322 (456)
Q Consensus 246 ~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~g--G~~~~~~ 322 (456)
.+|+ ..++.++..|+++++.+.+++..++..++++++|++.++|..+..+++.......+++++|.+..+ |+.++++
T Consensus 263 ~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 342 (567)
T PRK06178 263 IAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSSLRQVRVVSFVKKLNPD 342 (567)
T ss_pred HHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcchheeeeeccccccCCHH
Confidence 9998 567888999999999999999999999999999999999999999987765555667788886544 5899999
Q ss_pred HHHHHHHhCCCCceE-eccCccccccccccccCCC-----CCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEec
Q 012774 323 TIMAFASKFPKVVLV-QAYGLTESTAGVFRTVGPD-----ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG 396 (456)
Q Consensus 323 ~~~~~~~~~~~~~i~-~~yG~tE~~~~~~~~~~~~-----~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g 396 (456)
+.+.|++.+ +..++ +.||+||++..+....... .....+++|+|+||++++|+|+++++.++.|+.|||+++|
T Consensus 343 ~~~~~~~~~-g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~~Gel~v~g 421 (567)
T PRK06178 343 YRQRWRALT-GSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRT 421 (567)
T ss_pred HHHHHHHHh-CCcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCCCCcCCCCCceEEEEEC
Confidence 999999988 45554 5799999876544321111 1223467999999999999998889999999999999999
Q ss_pred CCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 397 PTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 397 ~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+.++.||+++++.+...| .+|||+|||+|++++||++++.||.+|+||++|++|+|.|+
T Consensus 422 ~~v~~gY~~~~~~~~~~~-~dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~ei 480 (567)
T PRK06178 422 PSLLKGYWNKPEATAEAL-RDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEV 480 (567)
T ss_pred CcccccccCChhhhhhcc-cCCceeecceEEEecCCeEEEEecccccEEECCEEECHHHH
Confidence 999999999999998887 58999999999999999999999999999999999999764
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-57 Score=455.96 Aligned_cols=398 Identities=20% Similarity=0.231 Sum_probs=327.4
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCC-CCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRL-SKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi-~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
.|+.+++.+++ . |+++|+++. +..+||+||.++++++|..|.+ .|+ ++||+|+++++|+++++++++||+
T Consensus 3 ~~~~~~l~~~~--~----p~~~Al~~~--~~~lTy~el~~~~~~la~~L~~-~g~~~~~~~V~i~~~n~~~~v~~~lA~~ 73 (540)
T PRK13388 3 DTIAQLLRDRA--G----DDTIAVRYG--DRTWTWREVLAEAAARAAALIA-LADPDRPLHVGVLLGNTPEMLFWLAAAA 73 (540)
T ss_pred hhHHHHHHhhc--c----CCceEEEEC--CceeeHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEECCCCcHHHHHHHHHH
Confidence 37888888764 4 899999987 7899999999999999999998 899 799999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc---CCeEEEEcCCchhhhhcccCCCccccccCCCCCC
Q 012774 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL---KHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSD 193 (456)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (456)
++|++++|++|.++.+++.++++.++++++|++++....+.+. ..+++.++...+.++...... ..+.....+++
T Consensus 74 ~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 151 (540)
T PRK13388 74 LGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLDLPGVRVLDVDTPAYAELVAAAGA--LTPHREVDAMD 151 (540)
T ss_pred hCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhcccCceEEEccchhhhhhhccccC--cCCCCCCCCCC
Confidence 9999999999999999999999999999999998776655443 234454444444443321111 11112356789
Q ss_pred EEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHH-HHHHhHhcceEEEecCCCHHH
Q 012774 194 VAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFF-CFRAAALMETAVVMQRFDLKM 272 (456)
Q Consensus 194 ~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~~~~~~ 272 (456)
+++++|||||||.||+|.++|+++..........+ ....+|++++.+|++|.+++.. ++.++..|+++++.+.+++..
T Consensus 152 ~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~ 230 (540)
T PRK13388 152 PFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERF-GLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAKFSASG 230 (540)
T ss_pred eEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHh-CCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECCCCCHHH
Confidence 99999999999999999999999988777766666 6788999999999999998854 446788999999888889999
Q ss_pred HHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccc
Q 012774 273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352 (456)
Q Consensus 273 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~ 352 (456)
+++.++++++|++..+|..+..++...........++|.+ . |++++++..+.+.+.+ +.++++.||+||++.++...
T Consensus 231 ~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~~~~l~~~-~-G~~~~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~ 307 (540)
T PRK13388 231 FLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRVA-F-GNEASPRDIAEFSRRF-GCQVEDGYGSSEGAVIVVRE 307 (540)
T ss_pred HHHHHHHhCCeEEEehHHHHHHHHhCCCCccccccceEEE-E-CCCCCHHHHHHHHHHh-CCceecccccccccceeecC
Confidence 9999999999999999999998887643322223456643 3 5667888889998888 78999999999998766532
Q ss_pred cCCCCCCCCCccccccCCcEEE-----------EEcCCCCCCC-CCCCcceEEEe-cCCcccccCCCccccccccCCCCe
Q 012774 353 VGPDECRRWGSTGRLSAGLEAK-----------IVDPETGDSL-PPGKEGELSIR-GPTIMKGYVGEPEVTSATLLPDGW 419 (456)
Q Consensus 353 ~~~~~~~~~~~~G~~~~~~~~~-----------i~d~~~~~~~-~~g~~Gel~i~-g~~~~~gy~~~~~~~~~~~~~~g~ 419 (456)
. ....+++|+|++++++. ++| ++|+.+ +.+..|||+++ |+.++.||+++++.+.+.| .+||
T Consensus 308 ~----~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d-~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~-~~g~ 381 (540)
T PRK13388 308 P----GTPPGSIGRGAPGVAIYNPETLTECAVARFD-AHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERM-RHGM 381 (540)
T ss_pred C----CCCCCCCCCCCCCcEEEcCCCCccccceecc-CccccccCCCcceEEEEecCCcccccccCChHHHHHHh-hcCc
Confidence 1 23457899999997653 333 344444 34678999998 9999999999999999888 5899
Q ss_pred eeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 420 MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 420 ~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|+|||+|++|+||++++.||.||+||++|++|+|.||
T Consensus 382 ~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eI 418 (540)
T PRK13388 382 YWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPI 418 (540)
T ss_pred eeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHH
Confidence 9999999999999999999999999999999999874
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-57 Score=459.08 Aligned_cols=408 Identities=23% Similarity=0.287 Sum_probs=337.9
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.++.++|.+.++.+ |+++|+++. ++++||+||.++++++|+.|.+ .|+++||+|+++++|+++++++++||++
T Consensus 10 ~~l~~~l~~~a~~~----p~~~a~~~~--~~~~Ty~~L~~~~~~~a~~L~~-~g~~~g~~V~i~~~n~~~~~~~~la~~~ 82 (540)
T PRK06164 10 DTLASLLDAHARAR----PDAVALIDE--DRPLSRAELRALVDRLAAWLAA-QGVRRGDRVAVWLPNCIEWVVLFLACAR 82 (540)
T ss_pred CCHHHHHHHHHHhC----CCCeEEecC--CCcccHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 68999999999999 999999976 7899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchH-----HHHhcc------CC-eEEEEcCCc----------hhhhh
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV-----HKLAKL------KH-RTILIDSPE----------FDSMT 175 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~------~~-~~~~~~~~~----------~~~~~ 175 (456)
+|++++|+++..+.+++.++++.+++++++++++.. ..+... .. .++.++... +....
T Consensus 83 ~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (540)
T PRK06164 83 LGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPGARVQLF 162 (540)
T ss_pred hCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCCCCCcccccccc
Confidence 999999999999999999999999999999987642 112111 11 222332100 00000
Q ss_pred cccC-CCcc-ccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHH
Q 012774 176 MSWN-SKHE-LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCF 253 (456)
Q Consensus 176 ~~~~-~~~~-~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~ 253 (456)
.... .... ........+++++++|||||||.||+|+++|+++..+.......+ +...++++++.+|++|.+|+..++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~g~~~~~ 241 (540)
T PRK06164 163 ALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAY-GYDPGAVLLAALPFCGVFGFSTLL 241 (540)
T ss_pred cccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-CCCCCCEEEEcCCchhHHHHHHHH
Confidence 0000 0000 001123467899999999999999999999999998888777776 677899999999999999998889
Q ss_pred HHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecC-CCCCHHHHHHHHHhCC
Q 012774 254 RAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGA-APLGKDTIMAFASKFP 332 (456)
Q Consensus 254 ~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG-~~~~~~~~~~~~~~~~ 332 (456)
.++..|+++++.+.+++..+++.|+++++|+++++|+++..+.+. .....+++++|.+..+| .+...++.+++.+.
T Consensus 242 ~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-- 318 (540)
T PRK06164 242 GALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDT-AGERADFPSARLFGFASFAPALGELAALARAR-- 318 (540)
T ss_pred HHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHh-hcccCCCcceeeeeeccCCcchHHHHHHHhhc--
Confidence 999999999999999999999999999999999999999999887 23445688999887776 45556666766665
Q ss_pred CCceEeccCccccccccccccCC-CCCCCCCcccccc-CCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCcccc
Q 012774 333 KVVLVQAYGLTESTAGVFRTVGP-DECRRWGSTGRLS-AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVT 410 (456)
Q Consensus 333 ~~~i~~~yG~tE~~~~~~~~~~~-~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~ 410 (456)
++++++.||+||++.+++..... .......+.|.++ +++.++|+|++++.+++.|+.|||+++|++++.||+++++.+
T Consensus 319 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t 398 (540)
T PRK06164 319 GVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDAT 398 (540)
T ss_pred CCceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCCCCCCeeEEEEecccccccccCCchhh
Confidence 78999999999998765543221 1122334668876 899999999888999999999999999999999999999999
Q ss_pred ccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 411 SATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 411 ~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
.+.|..+|||+|||+|++|+||++++.||.||+||++|++|+|.|+
T Consensus 399 ~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eI 444 (540)
T PRK06164 399 ARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEI 444 (540)
T ss_pred hhcccCCCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHH
Confidence 9999889999999999999999999999999999999999999874
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-58 Score=460.62 Aligned_cols=399 Identities=21% Similarity=0.281 Sum_probs=312.0
Q ss_pred CC-HHHHhhhcccCCCCCCCCCcEEEECCCC--ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHH
Q 012774 38 IS-AVDYVSSLRATLPWRDDDTVALINSVTG--LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS 114 (456)
Q Consensus 38 ~~-~~~~l~~~~~~~~~~~p~~~A~~~~~~~--~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la 114 (456)
|| +.+.|.+.++++ |+++|+++.+.+ +++||+||.++++++|+.|.+ . ++||+|+|+++|+++++++++|
T Consensus 1 ~~~~~~~l~~~~~~~----~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~-~--~~g~~V~l~~~~~~e~~~~~la 73 (525)
T PRK05851 1 MNELAAALSDAMTAS----GRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLD-R--DRPGAVGLVGEPTVELVAAIQG 73 (525)
T ss_pred CchHHHHHHHHhcCC----CCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHh-c--CCCCeEEEEcCCCHHHHHHHHH
Confidence 45 788899999999 999999987422 789999999999999999998 5 7999999999999999999999
Q ss_pred HHHhCCeEecCCCC-------CCHHHHHHHhhhcCCeEEEEccchHHHHhccCCeEEEEcCCchhhhhcccCCCcccccc
Q 012774 115 LLSLGVIISPANPV-------NTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRA 187 (456)
Q Consensus 115 ~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (456)
|+++|+++++++.. ...+++.++++.++++++|+++.....+......+ .+. ++........ .....
T Consensus 74 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~---~~~~~ 147 (525)
T PRK05851 74 AWLAGAAVSILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSSV-TVH--DLATAAHTNR---SASLT 147 (525)
T ss_pred HHHcCCCCcCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhccc-ccc--cccccccccc---cccCC
Confidence 99999986543211 12345667789999999999877665543221111 111 1111000000 11112
Q ss_pred CCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCC-CCcEEEEecchhhHhhHHHHHHHhHhcceEEEec
Q 012774 188 KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRV-SPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ 266 (456)
Q Consensus 188 ~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~ 266 (456)
...++++++++|||||||.||+|+++|+++...+......+ ... .+|++++++|++|.+++..++.++..|+++++.+
T Consensus 148 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~ 226 (525)
T PRK05851 148 PPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARV-GLDAATDVGCSWLPLYHDMGLAFLLTAALAGAPLWLAP 226 (525)
T ss_pred CCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-CCCCCCCeEEEcCCCccCccHHHHHHHHHcCCeEEEcC
Confidence 24668999999999999999999999999998888776666 566 8899999999999999988889999999999876
Q ss_pred C--C--CHHHHHHHHHHhcceeEEecHHHHHHHhcCCC-CCCCCCCCceEEEecCCCCCHHHHHHHHHh---C--CCCce
Q 012774 267 R--F--DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS-TDGYDLSSLETVACGAAPLGKDTIMAFASK---F--PKVVL 336 (456)
Q Consensus 267 ~--~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~---~--~~~~i 336 (456)
. + ++..+++.++++++|++..+|.++..+.+... ....+++++|.+++||+++++++.++|.+. + +...+
T Consensus 227 ~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~ 306 (525)
T PRK05851 227 TTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAA 306 (525)
T ss_pred HHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhc
Confidence 2 3 67889999999999988655555555543221 223457899999999999999999999875 2 22459
Q ss_pred EeccCccccccccccccCC-----------C--CCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCccccc
Q 012774 337 VQAYGLTESTAGVFRTVGP-----------D--ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGY 403 (456)
Q Consensus 337 ~~~yG~tE~~~~~~~~~~~-----------~--~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy 403 (456)
++.||+||++..+...... + .....+++|+|++|++++|+|++.+..++.|+.|||+++|++++.||
T Consensus 307 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~GY 386 (525)
T PRK05851 307 APSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGY 386 (525)
T ss_pred ccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCCeEEEEEecCchhhcc
Confidence 9999999997655432110 0 11234679999999999999965556789999999999999999999
Q ss_pred CCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 404 VGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 404 ~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+++++.+ .+|||+|||+|+++ +|+++|+||.||+||++|+||+|.||
T Consensus 387 ~~~~~~~-----~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eI 433 (525)
T PRK05851 387 LGQAPID-----PDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEI 433 (525)
T ss_pred ccCCccC-----CCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHH
Confidence 9988642 47899999999996 89999999999999999999999875
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-58 Score=546.97 Aligned_cols=404 Identities=18% Similarity=0.268 Sum_probs=347.0
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.++++++.+.++++ |+++|+++. ++++||+||.++++++|+.|.+ .|+++|++|+|+++++++++++++||++
T Consensus 2003 ~~~~~~~~~~a~~~----p~~~A~~~~--~~~lTy~eL~~~a~~lA~~L~~-~gv~~g~~V~l~~~~s~~~~~~~lAil~ 2075 (5163)
T PRK12316 2003 PGVHQRIAEQAARA----PEAIAVVFG--DQHLSYAELDSRANRLAHRLRA-RGVGPEVRVAIAAERSFELVVALLAVLK 2075 (5163)
T ss_pred CCHHHHHHHHHHhC----CCCeEEEcC--CCeEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHh
Confidence 58999999999999 999999987 7899999999999999999999 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-CCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEE
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-KHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 196 (456)
+|++++|++|.++.+++.+++++++++++++++.....+... ....+.++.. ...... ..........++++++
T Consensus 2076 aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~a~ 2150 (5163)
T PRK12316 2076 AGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLPAGVARLPLDRD--AEWADY---PDTAPAVQLAGENLAY 2150 (5163)
T ss_pred hceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccccccceEeccch--hhhhcc---CccCCCCCCCCCCeEE
Confidence 999999999999999999999999999999998766554321 2222322211 111110 0011223457789999
Q ss_pred EEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEec--CCCHHHHH
Q 012774 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ--RFDLKMML 274 (456)
Q Consensus 197 i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~--~~~~~~~~ 274 (456)
++|||||||.||||+++|+++.+.+......+ ...++++++.+.|++|..++..++.++..|+++++.+ .+++..++
T Consensus 2151 ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~~~~~~~~~~~~~~~~ 2229 (5163)
T PRK12316 2151 VIYTSGSTGLPKGVAVSHGALVAHCQAAGERY-ELSPADCELQFMSFSFDGAHEQWFHPLLNGARVLIRDDELWDPEQLY 2229 (5163)
T ss_pred EEeCccCCCCCCEeEEccHHHHHHHHHHHHhc-CCCCcceEEEecCchHHHHHHHHHHHHhCCCEEEeCCcccCCHHHHH
Confidence 99999999999999999999999988877777 6888999999999999988889999999999997765 36899999
Q ss_pred HHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccC
Q 012774 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (456)
Q Consensus 275 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~ 354 (456)
+.|+++++|+++++|+++..|.+...... ...++|.+++|||++++++.++|.+.+++.++++.||+||++..++....
T Consensus 2230 ~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~ 2308 (5163)
T PRK12316 2230 DEMERHGVTILDFPPVYLQQLAEHAERDG-RPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKC 2308 (5163)
T ss_pred HHHHHcCCeEEEcChHHHHHHHhhhhccc-CCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeeeeeeec
Confidence 99999999999999999999987543222 24589999999999999999999998888999999999999876654322
Q ss_pred CCCCC---CCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCC-------CCeeeccc
Q 012774 355 PDECR---RWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP-------DGWMRTGD 424 (456)
Q Consensus 355 ~~~~~---~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~-------~g~~~TGD 424 (456)
..... ...++|+|+++++++|+| +++++++.|+.|||+|+|+++++||+++|+.|++.|.. ++||+|||
T Consensus 2309 ~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~vp~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGD 2387 (5163)
T PRK12316 2309 RPQDPCGAAYVPIGRALGNRRAYILD-ADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGD 2387 (5163)
T ss_pred ccccccCCCcCCcccccCCCEEEEEC-CCCCCCCCCCeeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeEeccc
Confidence 21111 225799999999999999 67899999999999999999999999999999999853 35999999
Q ss_pred eEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 425 l~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+|++++||+|+|+||+||+||++|+||+|.||
T Consensus 2388 l~~~~~dG~l~~~GR~d~~iki~G~rie~~eI 2419 (5163)
T PRK12316 2388 LARYRADGVVEYLGRIDHQVKIRGFRIELGEI 2419 (5163)
T ss_pred EEEEcCCCcEEEecCCCCeEEEcCccCChHHH
Confidence 99999999999999999999999999999875
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=455.36 Aligned_cols=427 Identities=26% Similarity=0.379 Sum_probs=344.3
Q ss_pred ceeeCCCCCCCCC--CCCCCCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCE
Q 012774 20 KTFHSLRPPIDLP--PEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDT 97 (456)
Q Consensus 20 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~ 97 (456)
|-|+.++|+.... +.....++.++|...++++ |+++|+++. ++++||+||.+++.++|+.|..+.|+++||+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~~g~~~g~~ 78 (560)
T PRK08751 5 RPWLQSYPAGVAAEIDLEQFRTVAEVFATSVAKF----ADRPAYHSF--GKTITYREADQLVEQFAAYLLGELQLKKGDR 78 (560)
T ss_pred cchhhhcCCCCCCccCCcCCCcHHHHHHHHHHhC----CCCceEEEC--CceeeHHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence 4455556553222 1133468999999999999 999999987 7899999999999999999973389999999
Q ss_pred EEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhc----cCCe-EEEEcCC---
Q 012774 98 AFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----LKHR-TILIDSP--- 169 (456)
Q Consensus 98 V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~----~~~~-~~~~~~~--- 169 (456)
|+++++|+++++++++||+++|++++|++|..+.+++.++++.++++++++++.....+.. .... ++..+..
T Consensus 79 V~i~~~~~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (560)
T PRK08751 79 VALMMPNCLQYPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDML 158 (560)
T ss_pred EEEECCCCHHHHHHHHHHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCCccEEEEechhhhc
Confidence 9999999999999999999999999999999999999999999999999998776554432 1111 2211100
Q ss_pred ----------------------------chhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHH
Q 012774 170 ----------------------------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAV 221 (456)
Q Consensus 170 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~ 221 (456)
.+.+...... ...........++.++++|||||||.||+|.++|.++...+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~ 237 (560)
T PRK08751 159 GFPKAALVNFVVKYVKKLVPEYRINGAIRFREALALGR-KHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANM 237 (560)
T ss_pred ccccchhhhhhhhhhhccccccCCCccccHHHHHhccC-CCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHH
Confidence 0111110000 00111223456889999999999999999999999998777
Q ss_pred HHhccCCC---CCC-CCcEEEEecchhhHhhHH-HHHHHhHhcceEEEec-CCCHHHHHHHHHHhcceeEEecHHHHHHH
Q 012774 222 ASSFASSP---KRV-SPAVMLFTMPYFHIYGLF-FCFRAAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAM 295 (456)
Q Consensus 222 ~~~~~~~~---~~~-~~~~~~~~~p~~~~~g~~-~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 295 (456)
......+. ... ..+++++.+|++|.+++. ..+.++..|++.++.. .+++..+++.++++++|++.++|.++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 317 (560)
T PRK08751 238 QQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGL 317 (560)
T ss_pred HHHHHhhccccccCCCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHH
Confidence 65444331 122 246778889999999883 4556677777766654 57899999999999999999999999999
Q ss_pred hcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEE
Q 012774 296 SKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKI 375 (456)
Q Consensus 296 ~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i 375 (456)
.+.......+++++|.+++||+++++++.+.|++.+ +..+++.||+||++..++.... +.....+++|.|++++++++
T Consensus 318 ~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~vG~~~~~~~v~i 395 (560)
T PRK08751 318 LNTPGFDQIDFSSLKMTLGGGMAVQRSVAERWKQVT-GLTLVEAYGLTETSPAACINPL-TLKEYNGSIGLPIPSTDACI 395 (560)
T ss_pred HcCcCcCCcchhhheeeeeCCCCCCHHHHHHHHHHh-CCeEEEeeccccCCCceecccc-cccccCCCcCccCCCceEEE
Confidence 987665566788999999999999999999999987 7899999999999876554322 22234578999999999999
Q ss_pred EcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCC
Q 012774 376 VDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLL 455 (456)
Q Consensus 376 ~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e 455 (456)
+| +++..++.|+.|||+++|+.++.||+++++.+.+.|..+|||+|||+|+++++|++++.||.||+||++|++|+|.|
T Consensus 396 ~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~e 474 (560)
T PRK08751 396 KD-DAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNE 474 (560)
T ss_pred EC-CCCCCCCCCCceEEEEecCccchhhcCChhhhhhccccCCCccccceEEEcCCceEEEEeechhheeECCEEEcHHH
Confidence 99 78899999999999999999999999999999988878899999999999999999999999999999999999976
Q ss_pred C
Q 012774 456 N 456 (456)
Q Consensus 456 ~ 456 (456)
+
T Consensus 475 i 475 (560)
T PRK08751 475 I 475 (560)
T ss_pred H
Confidence 4
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-56 Score=450.13 Aligned_cols=399 Identities=25% Similarity=0.317 Sum_probs=332.4
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.++.++|.+.+. ++++|+++. ++.+||.||.++++++|+.|.++.|++++++|+++++|+++++++++||++
T Consensus 5 ~~~~~~l~~~a~------~~~~a~~~~--~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~ 76 (529)
T PRK07867 5 PTVAELLLPLAE------DDDRGLYFE--DSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAAL 76 (529)
T ss_pred ccHHHHHHHhcc------cCCceEEEC--CcEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 588899887774 688999987 789999999999999999999833889999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc--CCeEEEEcCCchhhhhcccCCCccccccCCCCCCEE
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL--KHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVA 195 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 195 (456)
+|++++|+++..+.+++.++++.++++++|++++....+... ...++.++...+.+........ ........+++++
T Consensus 77 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~ 155 (529)
T PRK07867 77 SGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLDPGVRVINVDSPAWADELAAHRDA-EPPFRVADPDDLF 155 (529)
T ss_pred cCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhccCceEEEeccccHHHHhcccCCC-CCCcccCCccceE
Confidence 999999999999999999999999999999998877655543 2334444433344433221111 1122335678999
Q ss_pred EEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhH-HHHHHHhHhcceEEEecCCCHHHHH
Q 012774 196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMML 274 (456)
Q Consensus 196 ~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~ 274 (456)
+++|||||||.||+|+++|+++..+.......+ +....|++++.+|++|.+++ ..++.++..|+++++.+.+++..++
T Consensus 156 ~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~ 234 (529)
T PRK07867 156 MLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRF-GLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASGFL 234 (529)
T ss_pred EEEECCCCCCCCcEEEecHHHHHHHHHHHHHhh-CCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEecCCCCHHHHH
Confidence 999999999999999999999988877777666 67788999999999999988 4456788899999998889999999
Q ss_pred HHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccC
Q 012774 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (456)
Q Consensus 275 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~ 354 (456)
+.++++++|++.++|+.+..++..........+++|. +.||+.+++.. .++.+.+ +.++++.||+||++..+...
T Consensus 235 ~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~~~~lr~-~~gg~~~~~~~-~~~~~~~-g~~l~~~YG~TE~~~~~~~~-- 309 (529)
T PRK07867 235 PDVRRYGATYANYVGKPLSYVLATPERPDDADNPLRI-VYGNEGAPGDI-ARFARRF-GCVVVDGFGSTEGGVAITRT-- 309 (529)
T ss_pred HHHHHhCCeEEeccHHHHHHHHhCCCcccccccceEE-EecCCCChHHH-HHHHHHh-CCcEEEeecccccccccccC--
Confidence 9999999999999999999888765433333457774 56888887764 6777777 88999999999998655431
Q ss_pred CCCCCCCCccccccCCcEEEEEcCCCCCCCCCCC------------cceEEE-ecCCcccccCCCccccccccCCCCeee
Q 012774 355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGK------------EGELSI-RGPTIMKGYVGEPEVTSATLLPDGWMR 421 (456)
Q Consensus 355 ~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~------------~Gel~i-~g~~~~~gy~~~~~~~~~~~~~~g~~~ 421 (456)
. ....+++|.|+++ +++++++++..++.|+ .|||++ +|++++.||+++++.+.+.| .+|||+
T Consensus 310 ~--~~~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~-~~g~~~ 384 (529)
T PRK07867 310 P--DTPPGALGPLPPG--VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM-RGGVYW 384 (529)
T ss_pred C--CCCCCCcCCCCCC--EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhh-cCCeEe
Confidence 1 1245689999999 6788877788888888 899999 99999999999999998888 589999
Q ss_pred ccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 422 TGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 422 TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|||+|+++++|++++.||.||+||++|++|+|.||
T Consensus 385 TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eI 419 (529)
T PRK07867 385 SGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPI 419 (529)
T ss_pred eccEEEEeCCCcEEEeccccCeEEECCEEeCHHHH
Confidence 99999999999999999999999999999999874
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-57 Score=453.13 Aligned_cols=407 Identities=27% Similarity=0.399 Sum_probs=344.1
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.|+.+++.+.++++ |+++|+++. ++.+||.||.+++++++..|.+ .|+++|++|+++++|+++++++++||++
T Consensus 12 ~~~~~~~~~~~~~~----~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~-~gv~~~~~V~i~~~~~~~~~~~~la~~~ 84 (524)
T PRK06188 12 ATYGHLLVSALKRY----PDRPALVLG--DTRLTYGQLADRISRYIQAFEA-LGLGTGDAVALLSLNRPEVLMAIGAAQL 84 (524)
T ss_pred ccHHHHHHHHHHHC----CCCeEEEEC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 58999999999999 999999998 7899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccc-hHHHHhc----c-C-CeEEEEcCCc-hhhhhcccCC-CccccccC
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSS-VVHKLAK----L-K-HRTILIDSPE-FDSMTMSWNS-KHELDRAK 188 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~----~-~-~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~ 188 (456)
+|++++|++|..+.+++.++++.++++.+++++. ....... . . ..++.+.... ...+...... ........
T Consensus 85 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (524)
T PRK06188 85 AGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPDGVDLLAAAAKFGPAPLVAA 164 (524)
T ss_pred hCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCccchhhHHHhhhccCccccccc
Confidence 9999999999999999999999999999999876 3332221 1 1 1223222211 1111111000 00111122
Q ss_pred CCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecCC
Q 012774 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRF 268 (456)
Q Consensus 189 ~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~ 268 (456)
..++++++++|||||||.||+|.++|.++...+......+ ....++++++.+|++|.+++. ++.++..|+++++.+.+
T Consensus 165 ~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~-~~~~~~~~l~~~pl~~~~g~~-~~~~l~~G~~~~~~~~~ 242 (524)
T PRK06188 165 ALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEW-EWPADPRFLMCTPLSHAGGAF-FLPTLLRGGTVIVLAKF 242 (524)
T ss_pred CCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-CCCcCcEEEEecCchhhhhHH-HHHHHHcCCEEEEcCCC
Confidence 3446699999999999999999999999998888777776 678899999999999988864 57789999999999999
Q ss_pred CHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccc
Q 012774 269 DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG 348 (456)
Q Consensus 269 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~ 348 (456)
++..+++.++++++|+++++|+++..+++........++++|.+++||++++++..+.+.+.+ +..+++.||+||++..
T Consensus 243 ~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~ 321 (524)
T PRK06188 243 DPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAEAIERF-GPIFAQYYGQTEAPMV 321 (524)
T ss_pred CHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCcceeEEEEcCCCCCHHHHHHHHHHh-CchhhheeCccccCCc
Confidence 999999999999999999999999999988766667789999999999999999999998888 6789999999999766
Q ss_pred cccccCCC----CCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccc
Q 012774 349 VFRTVGPD----ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGD 424 (456)
Q Consensus 349 ~~~~~~~~----~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGD 424 (456)
+....... ......++|+|+++++++|+| +++++++.|+.|||+++|+.++.||++++..+...+ .+|||+|||
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD 399 (524)
T PRK06188 322 ITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLD-EDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGD 399 (524)
T ss_pred eeecCchhccccccccCCccccccCCcEEEEEc-CCCCCCCCCCeeEEEEECcchhhhhcCChHHhhhhh-cCCceeecc
Confidence 55432111 123457899999999999999 568999999999999999999999999999988888 689999999
Q ss_pred eEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 425 l~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+|++++||++++.||.+++|+++|++|+|.||
T Consensus 400 l~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~I 431 (524)
T PRK06188 400 VAREDEDGFYYIVDRKKDMIVTGGFNVFPREV 431 (524)
T ss_pred eEEEcCCccEEEEeccccceecCCEEECHHHH
Confidence 99999999999999999999999999999764
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-56 Score=451.76 Aligned_cols=404 Identities=24% Similarity=0.330 Sum_probs=338.0
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.++.+++.+.++ |+++|+++. ++.+||+||.++++++|..|.+ .|+++|++|+++++|+++++++++||++
T Consensus 25 ~~~~~~~~~~a~------p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~-~g~~~g~~V~v~~~n~~~~~~~~la~~~ 95 (536)
T PRK10946 25 LPLTDILTRHAA------SDAIAVICG--ERQFSYRELNQASDNLACSLRR-QGIKPGDTALVQLGNVAEFYITFFALLK 95 (536)
T ss_pred ccHHHHHHHhhC------CCCeEEEeC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCChHHHHHHHHHHHH
Confidence 688999987775 799999997 7899999999999999999999 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccch--------HHHHhcc--CCeEEEEcCC----chhhhhcccCCCcc
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSV--------VHKLAKL--KHRTILIDSP----EFDSMTMSWNSKHE 183 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~--------~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~ 183 (456)
+|++++++.+.....++..+++.++++++++++.. ...+... ....+.+... .+..+...... .
T Consensus 96 ~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 173 (536)
T PRK10946 96 LGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDGEHSLDDAINHPAE--D 173 (536)
T ss_pred cCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCCCCccHHHHhhCccc--c
Confidence 99988887777778889999999999999997542 2222221 1223322211 22222222111 1
Q ss_pred ccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHH--HHHHHhHhcce
Q 012774 184 LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF--FCFRAAALMET 261 (456)
Q Consensus 184 ~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~--~~~~~l~~G~~ 261 (456)
.......++++++++|||||||.||+|+++|+++...+......+ ....++++++.+|++|.+++. ..+.++..|++
T Consensus 174 ~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~ 252 (536)
T PRK10946 174 FTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-GFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGT 252 (536)
T ss_pred cccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhc-CCCCCceEEEecCccccccchhhhHHHHhhcCcE
Confidence 112334678999999999999999999999999999888777666 678889999999999988873 57788999999
Q ss_pred EEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCC--CCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEec
Q 012774 262 AVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG--STDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (456)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~ 339 (456)
+++.+.+++..+++.++++++|++.++|..+..+++.. ......++++|.+++||+++++++.+.+.+.+ ++++++.
T Consensus 253 ~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~-g~~~~~~ 331 (536)
T PRK10946 253 VVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAEL-GCQLQQV 331 (536)
T ss_pred EEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHHHhc-CCeEEEe
Confidence 99998899999999999999999999999999998753 22234578999999999999999999999988 8999999
Q ss_pred cCccccccccccccCCCCCCCCCcccccc-CCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCC
Q 012774 340 YGLTESTAGVFRTVGPDECRRWGSTGRLS-AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG 418 (456)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g 418 (456)
||+||++..... .........+++|+|+ |++.++|+| +++++++.|+.|||+++|+.++.||+++++.+.+.|+.++
T Consensus 332 YG~tE~~~~~~~-~~~~~~~~~~~~G~p~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~ 409 (536)
T PRK10946 332 FGMAEGLVNYTR-LDDSDERIFTTQGRPMSPDDEVWVAD-ADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANG 409 (536)
T ss_pred ecccccceeeec-CCCccccccccCCcccCCCceEEEEC-CCCCCCCCCCccEEEEecCccchhhcCCcccchhhcccCC
Confidence 999997544322 1222223457899999 799999999 7789999999999999999999999999999999998899
Q ss_pred eeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 419 WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 419 ~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
||+|||+|++|+||++++.||.+|+||++|++|+|.|+
T Consensus 410 ~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~ei 447 (536)
T PRK10946 410 FYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEI 447 (536)
T ss_pred ceecCceEEECCCCcEEEeccccceeecCCEEEcHHHH
Confidence 99999999999999999999999999999999999764
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-56 Score=458.77 Aligned_cols=408 Identities=19% Similarity=0.177 Sum_probs=319.2
Q ss_pred CCCCCHHHHhhhcccCCCCCCCCCcEEEECCC---CceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHH
Q 012774 35 DAPISAVDYVSSLRATLPWRDDDTVALINSVT---GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPIL 111 (456)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~---~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~ 111 (456)
.+.+|+.+.+.++ . ++++|+++... .+++||+||.+++.++|+.|.+ +|+++||+|+++++|+++++++
T Consensus 84 ~~~~n~~~~~~~~---~----~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~GdrV~i~~~n~~e~~~~ 155 (652)
T TIGR01217 84 GARLNYAENLLRA---A----GTEPALLYVDETHEPAPVTWAELRRQVASLAAALRA-LGVRPGDRVSGYLPNIPQAVVA 155 (652)
T ss_pred CCeeeHHHHHhcc---C----CCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHH
Confidence 5668888888763 3 67888877422 2589999999999999999998 8999999999999999999999
Q ss_pred HHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccch---------HHHHh----ccC--CeEEEEcC--------
Q 012774 112 YFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSV---------VHKLA----KLK--HRTILIDS-------- 168 (456)
Q Consensus 112 ~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~----~~~--~~~~~~~~-------- 168 (456)
++||+++|++++|+++.++.+++.+++++++++++|+++.. ...+. ... ..+++++.
T Consensus 156 ~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 235 (652)
T TIGR01217 156 MLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEA 235 (652)
T ss_pred HHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCccccc
Confidence 99999999999999999999999999999999999997643 12221 111 12333321
Q ss_pred ------CchhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHH-HHhccCCCCCCCCcEEEEec
Q 012774 169 ------PEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAV-ASSFASSPKRVSPAVMLFTM 241 (456)
Q Consensus 169 ------~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~-~~~~~~~~~~~~~~~~~~~~ 241 (456)
..++++..... ...........+++++++|||||||.||||+++|++++... ......+ ...++|++++..
T Consensus 236 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d~~~~~~ 313 (652)
T TIGR01217 236 PKIDGALDLEDFTAAAQ-AAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHC-DLGPGDRLFYYT 313 (652)
T ss_pred ccccCcccHHHHHhccc-CCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhcc-CCCCCcEEEEeC
Confidence 11333322111 00111223456899999999999999999999999875433 3333334 678889999999
Q ss_pred chhhHhhHHHHHHHhHhcceEEEecC----CCHHHHHHHHHHhcceeEEecHHHHHHHhcCCC--CCCCCCCCceEEEec
Q 012774 242 PYFHIYGLFFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACG 315 (456)
Q Consensus 242 p~~~~~g~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~v~~g 315 (456)
|+.|+.. ..++.++..|+++++.+. .++..+++.++++++|++..+|.++..+..... ....++++||.+++|
T Consensus 314 ~~~~~~~-~~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~i~~g 392 (652)
T TIGR01217 314 TTGWMMW-NWLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQCVAST 392 (652)
T ss_pred Ccchhhh-HHHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeEEEee
Confidence 9998753 345689999999999852 378999999999999999888888877765321 234578999999999
Q ss_pred CCCCCHHHHHHHHHhCC-CCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEE
Q 012774 316 AAPLGKDTIMAFASKFP-KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSI 394 (456)
Q Consensus 316 G~~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i 394 (456)
|+++++++.+++.+.++ +..+.+.||+||++.+.... ........+++|.|.+|++++|+| ++|+++ +|+.|||++
T Consensus 393 Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~-~~~~~~~~g~~g~p~~g~~v~ivd-~~g~~~-~g~~GEl~v 469 (652)
T TIGR01217 393 GSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGA-NPTLPVHIGEIQAPGLGTAVQSWD-PEGKPV-TGEVGELVC 469 (652)
T ss_pred cCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCC-CCCCCCcCCccCCCcCCCceEEEC-CCCCCC-CCCccEEEE
Confidence 99999999999998873 45678999999975443321 122223457899999999999999 678877 599999999
Q ss_pred ecC--CcccccCCCccccc--cc-cC-CCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 395 RGP--TIMKGYVGEPEVTS--AT-LL-PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 395 ~g~--~~~~gy~~~~~~~~--~~-~~-~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+|+ +++.|||++++.+. +. |. .+|||+|||+|++|+||+++|+||.||+||++|+||+|.||
T Consensus 470 ~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EI 537 (652)
T TIGR01217 470 TNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEI 537 (652)
T ss_pred ecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHH
Confidence 996 58899999998654 12 21 26899999999999999999999999999999999999875
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-56 Score=450.63 Aligned_cols=402 Identities=21% Similarity=0.298 Sum_probs=339.0
Q ss_pred CHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHh
Q 012774 39 SAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSL 118 (456)
Q Consensus 39 ~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~~ 118 (456)
|+.+.+.+.+..+ |+++|+.+. +.++||+||.+++.++|+.|.+ .|+++|++|+++++|+.+++++++||+++
T Consensus 1 ~~~~~l~~~a~~~----p~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~-~g~~~~~~V~i~~~~~~~~~~~~la~~~~ 73 (502)
T TIGR01734 1 KLIEAIQAFAETY----PQTIAYRYQ--GQELTYQQLKEQSDRLAAFIQK-RILPKKSPIIVYGHMEPHMLVAFLGSIKS 73 (502)
T ss_pred CHHHHHHHHHHHC----CCceEEEcC--CcEEeHHHHHHHHHHHHHHHHH-hCCCCCCeEEEEeCCCHHHHHHHHHHHHh
Confidence 5778899999988 999999887 7899999999999999999998 89999999999999999999999999999
Q ss_pred CCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccCCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEEEE
Q 012774 119 GVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIM 198 (456)
Q Consensus 119 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~ 198 (456)
|++++|+++.++.+++.++++..+++.++++++....... ...+.++. ......... . ........+++.++++
T Consensus 74 G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~-~-~~~~~~~~~~~~~~il 147 (502)
T TIGR01734 74 GHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG--TQIITLSA--LEQAETSGG-P-VSFDHAVKGDDNYYII 147 (502)
T ss_pred CCEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccccC--CceEEchH--hhhhhhhcC-C-ccccccCCCCCeEEEE
Confidence 9999999999999999999999999999998765443322 12222211 111111111 0 1112234568899999
Q ss_pred cCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecC---CCHHHHHH
Q 012774 199 YSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKMMLK 275 (456)
Q Consensus 199 ~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~---~~~~~~~~ 275 (456)
|||||||.||+|.++|+++...+......+ ....+++++...|++|..++..++.++..|+++++.+. .++..+++
T Consensus 148 ~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~ 226 (502)
T TIGR01734 148 YTSGSTGNPKGVQISHDNLVSFTNWMLADF-PLSEGKQFLNQAPFSFDLSVMDLYPCLASGGTLHCLDKDITNNFKLLFE 226 (502)
T ss_pred ECCCCCCCCCEEEEecHHHHHHHHHHHHhC-CCCCCceEEeecCceechhHHHHHHHHHCCCEEEEcCHHHhcCHHHHHH
Confidence 999999999999999999998887777666 67788999999999999998888999999999998864 58899999
Q ss_pred HHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccCC
Q 012774 276 AVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGP 355 (456)
Q Consensus 276 ~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~ 355 (456)
.+.+++++.+.++|+++..+..........++++|.++++|+++++++.+++.+.+++..+++.||+||++..+......
T Consensus 227 ~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~ 306 (502)
T TIGR01734 227 ELPKTGLNVWVSTPSFVDMCLLDPNFNQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKIT 306 (502)
T ss_pred HHHHcCCeEEEEChhHHHHHHhccccccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEcc
Confidence 99999999999999999887765444555688999999999999999999999999999999999999997654432211
Q ss_pred C---CCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccC---CCCeeeccceEEEc
Q 012774 356 D---ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLL---PDGWMRTGDLCYID 429 (456)
Q Consensus 356 ~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~---~~g~~~TGDl~~~~ 429 (456)
. ......++|.+.++++++|+| ++++.++.|+.|||+++|+.++.||+++++.+.+.|. ..+||+|||+|++|
T Consensus 307 ~~~~~~~~~~~vg~~~~~~~~~i~~-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~ 385 (502)
T TIGR01734 307 QEILDQYPRLPIGFAKPDMNLFIMD-EEGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTIT 385 (502)
T ss_pred ccccccCCccccccccCCCEEEEEC-CCCCCCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEE
Confidence 1 122335799999999999999 6689999999999999999999999999998887652 23599999999998
Q ss_pred cCCcEEEecccccceeeCCeeecCCCC
Q 012774 430 EDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 430 ~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
++ ++++.||.+|+||++|++|+|.||
T Consensus 386 ~~-~l~i~GR~~d~i~~~G~~v~~~~I 411 (502)
T TIGR01734 386 DG-QLFYQGRLDFQIKLHGYRIELEDI 411 (502)
T ss_pred CC-EEEEeccccCeEEECcEEeCHHHH
Confidence 76 999999999999999999999864
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-56 Score=451.37 Aligned_cols=407 Identities=32% Similarity=0.502 Sum_probs=336.1
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.++.+++.+.+..+ |+++|+++. ++.+||+||.+++.++|+.|.+ .|+++||+|+++++|+++++++++||++
T Consensus 24 ~~~~~~~~~~a~~~----p~~~a~~~~--~~~~ty~eL~~~~~~la~~L~~-~gv~~gd~V~i~~~~~~~~~~~~lA~~~ 96 (563)
T PRK06710 24 QPLHKYVEQMASRY----PEKKALHFL--GKDITFSVFHDKVKRFANYLQK-LGVEKGDRVAIMLPNCPQAVIGYYGTLL 96 (563)
T ss_pred ccHHHHHHHHHHHC----CCceEEEec--CeeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHH
Confidence 58999999999988 999999987 8899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc----CCe-EEEEcCCc----------------------
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHR-TILIDSPE---------------------- 170 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~-~~~~~~~~---------------------- 170 (456)
+|++++|++|..+.+++.++++.++++++++++.....+... ... +++.....
T Consensus 97 ~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (563)
T PRK06710 97 AGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVV 176 (563)
T ss_pred cCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhhccceeEEeccccccccccccccchhhcccccccc
Confidence 999999999999999999999999999999987654433211 011 11110000
Q ss_pred ----------hhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCC-CCCCcEEEE
Q 012774 171 ----------FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK-RVSPAVMLF 239 (456)
Q Consensus 171 ----------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~-~~~~~~~~~ 239 (456)
++.+.... ...........++.++++|||||||.||+|.++|+++..+.......... ...++++++
T Consensus 177 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~ 254 (563)
T PRK06710 177 KVSESETIHLWNSVEKEV--NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLG 254 (563)
T ss_pred cccccchhhhhhhhhhcc--ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEE
Confidence 00000000 00001111234789999999999999999999999997654333322212 244568899
Q ss_pred ecchhhHhhH-HHHHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCC
Q 012774 240 TMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAP 318 (456)
Q Consensus 240 ~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~ 318 (456)
++|++|.+++ ..++.++..|+++++.+.+++..+++.|+++++|++.++|+++..+.+........++++|.+++||++
T Consensus 255 ~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~v~~gg~~ 334 (563)
T PRK06710 255 VLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAP 334 (563)
T ss_pred eCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhheeeCCCc
Confidence 9999999988 445678889999999988999999999999999999999999999988765555567899999999999
Q ss_pred CCHHHHHHHHHhCCCCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCC
Q 012774 319 LGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPT 398 (456)
Q Consensus 319 ~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~ 398 (456)
+++++.+++.+.+ +..+++.||+||++..+..... ......+++|+|.+++.+++++++++.+++.|+.|||+++|+.
T Consensus 335 ~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~ 412 (563)
T PRK06710 335 LPVEVQEKFETVT-GGKLVEGYGLTESSPVTHSNFL-WEKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQ 412 (563)
T ss_pred CCHHHHHHHHHhh-CCCEecccccccCccccccCcc-cccccCCccCCCCCCCeEEEEECCCCccCCCCCceEEEEecCc
Confidence 9999999999987 8899999999999876543221 1223457899999999999999888999999999999999999
Q ss_pred cccccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 399 IMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 399 ~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
++.||+++++.+...+ .+|||+|||+++++++|+++++||.||+||++|++|+|.|+
T Consensus 413 ~~~gY~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~ei 469 (563)
T PRK06710 413 IMKGYWNKPEETAAVL-QDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREV 469 (563)
T ss_pred cchhhhCChHHHhhhc-ccCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHH
Confidence 9999999999998887 58999999999999999999999999999999999999874
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-57 Score=536.89 Aligned_cols=401 Identities=20% Similarity=0.260 Sum_probs=346.2
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.++++++.++++++ |+++|+++. +..+||+||.++++++|+.|.+ .|+++|++|+|+++++++++++++|+++
T Consensus 3720 ~~~~~~~~~~~~~~----p~~~Av~~~--~~~~tY~eL~~~~~~la~~L~~-~gv~~~~~V~v~~~~s~~~~v~~lavlk 3792 (4334)
T PRK05691 3720 QSYVRLFEAQVAAH----PQRIAASCL--DQQWSYAELNRAANRLGHALRA-AGVGVDQPVALLAERGLDLLGMIVGSFK 3792 (4334)
T ss_pred cCHHHHHHHHHHhC----CCceEEEcC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHh
Confidence 58999999999999 999999998 7899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-------CCe-EEEEcCCchhhhhcccCCCccccccCC
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-------KHR-TILIDSPEFDSMTMSWNSKHELDRAKV 189 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (456)
+|++++||+|.++.+++.+++++++++++++++......... ... +++.+. ...... .........
T Consensus 3793 aG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~ 3866 (4334)
T PRK05691 3793 AGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEE-----VQAGEV-ASHNPGIYS 3866 (4334)
T ss_pred hCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeecc-----cccccc-cccCCCCCC
Confidence 999999999999999999999999999999987654332211 111 111111 100000 001122345
Q ss_pred CCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecC--
Q 012774 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR-- 267 (456)
Q Consensus 190 ~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~-- 267 (456)
.+++.+|++|||||||.||||+++|+++.+.+......+ ...+.++++...++.|..++..++.++..|+++++.+.
T Consensus 3867 ~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~fd~s~~~~~~~l~~G~~l~i~~~~~ 3945 (4334)
T PRK05691 3867 GPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYL-ALSEADVIAQTASQSFDISVWQFLAAPLFGARVEIVPNAI 3945 (4334)
T ss_pred CCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhc-CCCccceEEEecCCchhHHHHHHHHHHhCCCEEEEcCccc
Confidence 678999999999999999999999999999998887777 78999999999999999999999999999999999863
Q ss_pred -CCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccc
Q 012774 268 -FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTEST 346 (456)
Q Consensus 268 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~ 346 (456)
.++..+++.++++++|++.++|+++..++... ...++++|.+++|||++++++.++|.+.+++++++|.||+||++
T Consensus 3946 ~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t 4022 (4334)
T PRK05691 3946 AHDPQGLLAHVQAQGITVLESVPSLIQGMLAED---RQALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECS 4022 (4334)
T ss_pred cCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc---cccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccce
Confidence 57899999999999999999999999887542 23478999999999999999999999988899999999999998
Q ss_pred cccccccCCCC--CCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCC-------C
Q 012774 347 AGVFRTVGPDE--CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP-------D 417 (456)
Q Consensus 347 ~~~~~~~~~~~--~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~-------~ 417 (456)
..++....... .....++|+|+++++++|+| +.++++|.|..|||+|+|+.+++||+++|+.|+++|.+ +
T Consensus 4023 ~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~ 4101 (4334)
T PRK05691 4023 DDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLD-EALELVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGE 4101 (4334)
T ss_pred eEEEEEEcccccccCCcCCCCCccCCCEEEEEC-CCCCCCCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCc
Confidence 87654332211 12335799999999999999 88999999999999999999999999999999999853 4
Q ss_pred CeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 418 GWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 418 g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+||+|||+|++++||+|+|+||.|++||++|+||+|.||
T Consensus 4102 ~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~riel~eI 4140 (4334)
T PRK05691 4102 RLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEI 4140 (4334)
T ss_pred eeeccCcceeecCCCcEEEecccCCcEEeceEEecHHHH
Confidence 699999999999999999999999999999999999875
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-57 Score=534.69 Aligned_cols=402 Identities=23% Similarity=0.346 Sum_probs=348.5
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.+++++|.++++.+ |+++|+++. ++++||+||.++++++|+.|.+ .|+++|++|+++++++++++++++|+++
T Consensus 1131 ~~l~~~~~~~a~~~----p~~~Al~~~--~~~lTY~eL~~~~~~lA~~L~~-~gv~~g~~V~i~~~~s~~~iv~~lailk 1203 (4334)
T PRK05691 1131 AWLPELLNEQARQT----PERIALVWD--GGSLDYAELHAQANRLAHYLRD-KGVGPDVCVAIAAERSPQLLVGLLAILK 1203 (4334)
T ss_pred CCHHHHHHHHHHhC----CCCeEEEEC--CceEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 58999999999999 999999987 7899999999999999999999 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-CCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEE
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-KHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 196 (456)
+|++++|++|.++.+++.+++++++++++|+++.....+... ....+.++...... .. .........++++++
T Consensus 1204 aG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~a~ 1277 (4334)
T PRK05691 1204 AGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQAEGVSAIALDSLHLDS----WP--SQAPGLHLHGDNLAY 1277 (4334)
T ss_pred hCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccccCceEEeeccccccc----cC--CCCCCCCCCCCCeEE
Confidence 999999999999999999999999999999998766555432 12222222111111 00 011122346789999
Q ss_pred EEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEec---CCCHHHH
Q 012774 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ---RFDLKMM 273 (456)
Q Consensus 197 i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~---~~~~~~~ 273 (456)
++|||||||.||||+++|+++.+.+......+ ...+++++++..|+.|..++..++.++..|+++++.+ ..++..+
T Consensus 1278 ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~fd~s~~~~~~~L~~G~~l~i~~~~~~~~~~~l 1356 (4334)
T PRK05691 1278 VIYTSGSTGQPKGVGNTHAALAERLQWMQATY-ALDDSDVLMQKAPISFDVSVWECFWPLITGCRLVLAGPGEHRDPQRI 1356 (4334)
T ss_pred EEEcCCCCCCCceeEeecHHHHHHHHHHHHhc-CCCCCCEEEEeCCccHHHHHHHHHHHHhCCCEEEEcCccccCCHHHH
Confidence 99999999999999999999999888777777 6889999999999999998888999999999999985 3689999
Q ss_pred HHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCcccccccccccc
Q 012774 274 LKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353 (456)
Q Consensus 274 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~ 353 (456)
++.|+++++|++.++|+++..+..... ...++++|.+++|||++++++.++|.+.+++.+++|.||+||++..++...
T Consensus 1357 ~~~i~~~~vt~~~~~Ps~l~~l~~~~~--~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~ 1434 (4334)
T PRK05691 1357 AELVQQYGVTTLHFVPPLLQLFIDEPL--AAACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQ 1434 (4334)
T ss_pred HHHHHHcCCeEEECcHHHHHHHHhCcc--cccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeee
Confidence 999999999999999999999986532 235789999999999999999999999998999999999999987665432
Q ss_pred CCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCC-------CCeeeccceE
Q 012774 354 GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP-------DGWMRTGDLC 426 (456)
Q Consensus 354 ~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~-------~g~~~TGDl~ 426 (456)
.........++|+|+++++++|+| +.++.++.|+.|||+|+|+++++||+++|+.|.+.|.. .+||+|||+|
T Consensus 1435 ~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~ 1513 (4334)
T PRK05691 1435 CQAEDGERSPIGRPLGNVLCRVLD-AELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRA 1513 (4334)
T ss_pred cccccCCCCcccceeCCCEEEEEC-CCCCCCCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceE
Confidence 222233457899999999999999 77899999999999999999999999999999998853 2499999999
Q ss_pred EEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 427 YIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 427 ~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
++++||+++|+||+|++||++|+||+|.||
T Consensus 1514 ~~~~dG~l~~~GR~d~qiki~G~rie~~eI 1543 (4334)
T PRK05691 1514 RWNADGALEYLGRLDQQVKLRGFRVEPEEI 1543 (4334)
T ss_pred EECCCCCEEEecccCcEEEECCEEcCHHHH
Confidence 999999999999999999999999999875
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-56 Score=454.04 Aligned_cols=406 Identities=21% Similarity=0.277 Sum_probs=326.6
Q ss_pred CCCCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHH
Q 012774 35 DAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS 114 (456)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la 114 (456)
....|+.+.+.+.++++ |+++|+++. ++.+||+||.++++++|..|.+ .|+++||+|+++++|+++++++++|
T Consensus 34 ~~~~tl~~~l~~~a~~~----p~~~Ai~~~--~~~~Ty~eL~~~~~~la~~L~~-~g~~~gd~V~i~~~n~~~~v~~~lA 106 (600)
T PRK08279 34 DSKRSLGDVFEEAAARH----PDRPALLFE--DQSISYAELNARANRYAHWAAA-RGVGKGDVVALLMENRPEYLAAWLG 106 (600)
T ss_pred CCcccHHHHHHHHHHhC----CCCcEEEeC--CCcccHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCCCHHHHHHHHH
Confidence 34479999999999999 999999997 7899999999999999999998 8999999999999999999999999
Q ss_pred HHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-----C-CeEEEEcC------CchhhhhcccCCCc
Q 012774 115 LLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----K-HRTILIDS------PEFDSMTMSWNSKH 182 (456)
Q Consensus 115 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~-~~~~~~~~------~~~~~~~~~~~~~~ 182 (456)
|+++|++++|+++..+.+++.++++.++++++|++++....+... . ..++..+. ..+.++........
T Consensus 107 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (600)
T PRK08279 107 LAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDDPEGYEDLAAAAAGAP 186 (600)
T ss_pred HHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCccccccccHHHHhhhcccCC
Confidence 999999999999999999999999999999999998776655422 1 11222221 11222221111000
Q ss_pred ---cccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHH-HHHHHhHh
Q 012774 183 ---ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF-FCFRAAAL 258 (456)
Q Consensus 183 ---~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~-~~~~~l~~ 258 (456)
.........+++++++|||||||.||+|+++|+++..++......+ ...+++++++.+|++|.+++. .++.++..
T Consensus 187 ~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~ 265 (600)
T PRK08279 187 TTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-RLTPDDVLYCCLPLYHNTGGTVAWSSVLAA 265 (600)
T ss_pred ccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhc-CCCCCcEEEEecCchhhhhHHHHHHHHHhc
Confidence 1112234568899999999999999999999999999888777766 688899999999999999985 44567788
Q ss_pred cceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEe
Q 012774 259 METAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ 338 (456)
Q Consensus 259 G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~ 338 (456)
|+++++.+.+++..+++.++++++|++.++|+++..+............++|.+ +|+.++++++++|.+.++...+++
T Consensus 266 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~ 343 (600)
T PRK08279 266 GATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILE 343 (600)
T ss_pred CcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccccCcceeEE--ecCCCCHHHHHHHHHHhCcceeee
Confidence 888888888999999999999999999999999999987654444445667754 478899999999999996667999
Q ss_pred ccCccccccccccccCCCCCCCCCccccccC----CcEEE---------EEcCC-CCCCCCCCCcceEE--EecCCcccc
Q 012774 339 AYGLTESTAGVFRTVGPDECRRWGSTGRLSA----GLEAK---------IVDPE-TGDSLPPGKEGELS--IRGPTIMKG 402 (456)
Q Consensus 339 ~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~----~~~~~---------i~d~~-~~~~~~~g~~Gel~--i~g~~~~~g 402 (456)
.||+||++...... ....+++|.+.+ +..+. +.+.+ ....+++|+.|||+ +.|+.++.|
T Consensus 344 ~YG~tE~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~G 418 (600)
T PRK08279 344 FYAASEGNVGFINV-----FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPFDG 418 (600)
T ss_pred eecccccceeeccc-----CCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCcccccc
Confidence 99999987543321 123456777665 33332 22211 11357789999998 779999999
Q ss_pred cCCCccccccccC------CCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 403 YVGEPEVTSATLL------PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 403 y~~~~~~~~~~~~------~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
| +++..+.+.|. .++||+|||+|++|+||++++.||.||+||++|++|+|.||
T Consensus 419 Y-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eI 477 (600)
T PRK08279 419 Y-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEV 477 (600)
T ss_pred c-CCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHH
Confidence 9 88888877653 25799999999999999999999999999999999999875
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-56 Score=449.41 Aligned_cols=408 Identities=23% Similarity=0.347 Sum_probs=325.2
Q ss_pred CCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
.+|..+.+...++.+ |+++|+++. +.++||+||.++++++|..|.+ .|+++||+|+++++|+++++++++||+
T Consensus 19 ~~~~~~~~~~~~~~~----p~~~a~~~~--~~~~ty~eL~~~~~~lA~~L~~-~g~~~gd~V~i~~~n~~~~~~~~la~~ 91 (567)
T PLN02479 19 ALTPLWFLERAAVVH----PTRKSVVHG--SVRYTWAQTYQRCRRLASALAK-RSIGPGSTVAVIAPNIPAMYEAHFGVP 91 (567)
T ss_pred ccCHHHHHHHHHhhC----CCceEEEEC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCcHHHHHHHHHHH
Confidence 367888888888888 999999987 7799999999999999999998 899999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhc------------cCC-eEEEEcCC--------------
Q 012774 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK------------LKH-RTILIDSP-------------- 169 (456)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~------------~~~-~~~~~~~~-------------- 169 (456)
++|++++|+++..+.+++.++++.++++++++++...+.... ... .++++...
T Consensus 92 ~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (567)
T PLN02479 92 MAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKG 171 (567)
T ss_pred hCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccC
Confidence 999999999999999999999999999999998876543221 011 12222211
Q ss_pred --chhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHh
Q 012774 170 --EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIY 247 (456)
Q Consensus 170 --~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 247 (456)
.+.++....... .........++.++++|||||||.||+|+++|+++..........+ ....++++++.+|++|..
T Consensus 172 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~h~~ 249 (567)
T PLN02479 172 AIEYEKFLETGDPE-FAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIW-GMNEGAVYLWTLPMFHCN 249 (567)
T ss_pred cccHHHHHhccccc-cccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhc-CCCCCCEEEEecchhhhh
Confidence 122221111100 0001112234677899999999999999999999876655444444 567889999999999999
Q ss_pred hHHHHHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCC-CCCCCceEEEecCCCCCHHHHHH
Q 012774 248 GLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDG-YDLSSLETVACGAAPLGKDTIMA 326 (456)
Q Consensus 248 g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~l~~lr~v~~gG~~~~~~~~~~ 326 (456)
++...+.....++..+....+++..+++.++++++|+++++|+++..|.+...... ..++++|.++++|+++++++.++
T Consensus 250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~ 329 (567)
T PLN02479 250 GWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLFA 329 (567)
T ss_pred hHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCCHHHHHH
Confidence 98555544444555555677899999999999999999999999999987644322 25789999999999999999999
Q ss_pred HHHhCCCCceEeccCccccccccccccCCC--------C-CCCCCccccccCCcE-EEEEcCCCCCCCCCC--CcceEEE
Q 012774 327 FASKFPKVVLVQAYGLTESTAGVFRTVGPD--------E-CRRWGSTGRLSAGLE-AKIVDPETGDSLPPG--KEGELSI 394 (456)
Q Consensus 327 ~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~--------~-~~~~~~~G~~~~~~~-~~i~d~~~~~~~~~g--~~Gel~i 394 (456)
|.+. +.++++.||+||+++.+..+.... . .....+.|.+.++.. ++|+|++++.+++.+ +.|||++
T Consensus 330 ~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v 407 (567)
T PLN02479 330 MSEK--GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVM 407 (567)
T ss_pred HHhc--CCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEE
Confidence 9875 789999999999865433221000 0 011235688888875 889987778888764 6799999
Q ss_pred ecCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 395 RGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 395 ~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+|++++.||+++++.+.+.| .+|||+|||+|++|++|++++.||.||+||++|++|+|.||
T Consensus 408 ~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eI 468 (567)
T PLN02479 408 RGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEV 468 (567)
T ss_pred eccchhhhhhcCcccccchh-cCCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHH
Confidence 99999999999999999998 58999999999999999999999999999999999999874
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-56 Score=446.28 Aligned_cols=394 Identities=28% Similarity=0.374 Sum_probs=317.6
Q ss_pred cccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecCC
Q 012774 47 LRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126 (456)
Q Consensus 47 ~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~~G~~~v~l~ 126 (456)
.++++ |+++|+++.++++++||+||.++++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++|++
T Consensus 6 ~a~~~----p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~-~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~ 80 (501)
T PRK13390 6 HAQIA----PDRPAVIVAETGEQVSYRQLDDDSAALARVLYD-AGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAIN 80 (501)
T ss_pred hhhhC----CCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccc
Confidence 44556 999999886557899999999999999999998 8999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhhhcCCeEEEEccchHHHHhccC--CeE-EEEcCC-----chhhhhcccCCCccccccCCCCCCEEEEE
Q 012774 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK--HRT-ILIDSP-----EFDSMTMSWNSKHELDRAKVCQSDVAAIM 198 (456)
Q Consensus 127 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~i~ 198 (456)
+.++++++.++++.++++++++++.......... ... +.+... .+++.... . .......++.++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~a~i~ 154 (501)
T PRK13390 81 HHLTAPEADYIVGDSGARVLVASAALDGLAAKVGADLPLRLSFGGEIDGFGSFEAALAG-----A-GPRLTEQPCGAVML 154 (501)
T ss_pred cCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHhhhccceEEEecCcccccccHHHHhcc-----c-CCCCCCCcccEEEE
Confidence 9999999999999999999999876543322211 111 111110 11111110 0 00111223579999
Q ss_pred cCCCCCCCCchhcc--cHHHHHHHH---HH-hccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecCCCHHH
Q 012774 199 YSSGTTGRVKGVML--THRNLTAAV---AS-SFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKM 272 (456)
Q Consensus 199 ~TSGtTG~PK~V~~--th~~l~~~~---~~-~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~ 272 (456)
|||||||.||+|++ +|.++.... .. ....+ ....++++++.+|++|.+++...+..+..|+++++.+.+++..
T Consensus 155 ~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~h~~~~~~~~~~~~~g~~~~~~~~~~~~~ 233 (501)
T PRK13390 155 YSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFY-DISESDIYYSSAPIYHAAPLRWCSMVHALGGTVVLAKRFDAQA 233 (501)
T ss_pred eCCCCCCCCCEEEeeccccccccchhhhHhhHHHHh-CCCCCCeEEecccchhhhHHHHHHHHHhcCceEEEcCCcCHHH
Confidence 99999999999995 455543321 11 11122 4678899999999999998855555677899999988899999
Q ss_pred HHHHHHHhcceeEEecHHHHHHHhcCCCC--CCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccc
Q 012774 273 MLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVF 350 (456)
Q Consensus 273 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~ 350 (456)
+++.|+++++|++.++|+++..+.+.... ...+++++|.++.||+++++++.+.+++.+ +..+++.||+||+++++.
T Consensus 234 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~ 312 (501)
T PRK13390 234 TLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWL-GPIVYEYYSSTEAHGMTF 312 (501)
T ss_pred HHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhc-CCceeeeecccccCceEE
Confidence 99999999999999999999998875422 334578999999999999999999999987 788999999999986544
Q ss_pred cccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCC--CCeeeccceEEE
Q 012774 351 RTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP--DGWMRTGDLCYI 428 (456)
Q Consensus 351 ~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~--~g~~~TGDl~~~ 428 (456)
... .......+++|+|+++ +++|+| ++++++++|+.|||+++|++++.||+++++.+.+.+.. ++|++|||+|++
T Consensus 313 ~~~-~~~~~~~~~~G~~~~g-~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~ 389 (501)
T PRK13390 313 IDS-PDWLAHPGSVGRSVLG-DLHICD-DDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSV 389 (501)
T ss_pred ecc-hhhccCCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEE
Confidence 321 1122345789999999 799999 78899999999999999999999999999999887753 579999999999
Q ss_pred ccCCcEEEecccccceeeCCeeecCCCC
Q 012774 429 DEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 429 ~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|+||++++.||.||+||++|++|+|.||
T Consensus 390 ~~dg~l~~~gR~~~~i~~~G~~v~p~eI 417 (501)
T PRK13390 390 DEDGYLYLADRKSFMIISGGVNIYPQET 417 (501)
T ss_pred CCCCeEEEeeccccceeECCeeeCHHHH
Confidence 9999999999999999999999999874
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-56 Score=440.35 Aligned_cols=372 Identities=27% Similarity=0.365 Sum_probs=315.5
Q ss_pred CCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHH
Q 012774 56 DDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEIS 135 (456)
Q Consensus 56 p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~ 135 (456)
++++|++++ ++++||+||.++++++|..|.. +|+|+++++|+++++++++||+++|++++|+++..+.+++.
T Consensus 14 ~~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~------~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~ 85 (471)
T PRK07787 14 DIADAVRIG--GRVLSRSDLAGAATAVAERVAG------ARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAERR 85 (471)
T ss_pred CCceEEEeC--CcEEEHHHHHHHHHHHHHHhcc------CCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChHHHH
Confidence 889999997 8899999999999999999963 68999999999999999999999999999999999999999
Q ss_pred HHhhhcCCeEEEEccchHHHHhccCCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHH
Q 012774 136 RQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHR 215 (456)
Q Consensus 136 ~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~ 215 (456)
++++.+++++++++.... ........+...... + .......++++++++|||||||.||+|.++|+
T Consensus 86 ~~l~~~~~~~il~~~~~~--~~~~~~~~~~~~~~~-------~-----~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~ 151 (471)
T PRK07787 86 HILADSGAQAWLGPAPDD--PAGLPHVPVRLHARS-------W-----HRYPEPDPDAPALIVYTSGTTGPPKGVVLSRR 151 (471)
T ss_pred HHHHhcCCCEEEecCCcc--cccccceeeeccccc-------c-----ccCCCCCCCceEEEEECCCCCCCCCEEEEeHH
Confidence 999999999999976311 001110001000000 0 01112456899999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCCCcEEEEecchhhHhhH-HHHHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHH
Q 012774 216 NLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVA 294 (456)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 294 (456)
++..++......+ ...+++++++.+|++|.+|+ ..++.++..|+++++...+++..+++.|+ +++|++.++|+++..
T Consensus 152 ~l~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~ 229 (471)
T PRK07787 152 AIAADLDALAEAW-QWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSR 229 (471)
T ss_pred HHHHHHHHHHHhc-CCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHHHHHHHh-hCceEEEcchHHHHH
Confidence 9998887776666 67788999999999999998 56788999999999998899999999999 999999999999999
Q ss_pred HhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccCCCCCCCCCccccccCCcEEE
Q 012774 295 MSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAK 374 (456)
Q Consensus 295 l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 374 (456)
+.+.... ...++++|.+++||+++++++.++|.+.+ +.++++.||+||++...... .......+++|+|+++++++
T Consensus 230 l~~~~~~-~~~l~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~--~~~~~~~~~vG~~~~g~~~~ 305 (471)
T PRK07787 230 IAADPEA-ARALRGARLLVSGSAALPVPVFDRLAALT-GHRPVERYGMTETLITLSTR--ADGERRPGWVGLPLAGVETR 305 (471)
T ss_pred HHhCccc-cccccceeEEEECCCCCCHHHHHHHHHHc-CCCeecccCccccCcceecC--CCCcccCCcccccCCCcEEE
Confidence 9875322 33578999999999999999999999987 78999999999998654332 22233457899999999999
Q ss_pred EEcCCCCCCCC-CCC-cceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEeccc-ccceeeCCeee
Q 012774 375 IVDPETGDSLP-PGK-EGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRL-KDLIKYKGYQV 451 (456)
Q Consensus 375 i~d~~~~~~~~-~g~-~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~-~d~ik~~G~~v 451 (456)
|+| +++.+++ .|+ .|||+++|+.++.||+++++.+.+.|..+|||+|||+|++++||++++.||. |+++|++|++|
T Consensus 306 i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v 384 (471)
T PRK07787 306 LVD-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRI 384 (471)
T ss_pred EEC-CCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCceeEeeCCEEE
Confidence 999 5577776 343 7999999999999999999999999977999999999999999999999996 89999999999
Q ss_pred cCCCC
Q 012774 452 LPLLN 456 (456)
Q Consensus 452 ~p~e~ 456 (456)
+|.|+
T Consensus 385 ~~~eI 389 (471)
T PRK07787 385 GAGEI 389 (471)
T ss_pred CHHHH
Confidence 99874
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-56 Score=447.00 Aligned_cols=405 Identities=22% Similarity=0.319 Sum_probs=330.2
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECC--CCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSV--TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL 115 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~--~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~ 115 (456)
.++.+++.+.++.+ |+++++.+.. ..+.+||.||.++++++|+.|.+ .|+++||+|+++++|+++++++++||
T Consensus 10 ~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~-~g~~~~d~v~i~~~~~~~~~~~~la~ 84 (539)
T PRK07008 10 LLISSLIAHAARHA----GDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAA-LGVEPGDRVGTLAWNGYRHLEAYYGV 84 (539)
T ss_pred CCHHHHHHHHHhhC----CCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 47889999888888 8888887532 23689999999999999999999 89999999999999999999999999
Q ss_pred HHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-----CCeE-EEEcC-----------Cchhhhhccc
Q 012774 116 LSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KHRT-ILIDS-----------PEFDSMTMSW 178 (456)
Q Consensus 116 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~-~~~~~-----------~~~~~~~~~~ 178 (456)
+++|++++|+++..+.+++..+++.+++++++++++..+.+.+. ..+. +.+.. ..++++....
T Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (539)
T PRK07008 85 SGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCYETLVGAQ 164 (539)
T ss_pred HhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCccccCCcccccHHHHhccc
Confidence 99999999999999999999999999999999998766544321 1111 11111 1122222111
Q ss_pred CCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHH--HhccCCCCCCCCcEEEEecchhhHhhHHHHHHHh
Q 012774 179 NSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVA--SSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAA 256 (456)
Q Consensus 179 ~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l 256 (456)
.. ........+++.++++|||||||.||+|++||+++..+.. .....+ +...+|++++..|++|..++...+.++
T Consensus 165 ~~--~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~~~~~~~~~l 241 (539)
T PRK07008 165 DG--DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAM-GLSARDAVLPVVPMFHVNAWGLPYSAP 241 (539)
T ss_pred CC--CcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhccccc-CCCCCceEEecCchHHhhhHHHHHHHH
Confidence 11 1112234567899999999999999999999999865432 222334 567889999999999988877678889
Q ss_pred HhcceEEEec-CCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCc
Q 012774 257 ALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVV 335 (456)
Q Consensus 257 ~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~ 335 (456)
..|+++++.+ .+++..+++.++++++|++.++|+++..+++.......+++++|.++++|+++++++++++.+.+ +.+
T Consensus 242 ~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~ 320 (539)
T PRK07008 242 LTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACPPAMIRTFEDEY-GVE 320 (539)
T ss_pred hcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHHHh-CCc
Confidence 9999998874 67999999999999999999999999999987766666789999999999999999999999988 899
Q ss_pred eEeccCccccccccccccCCC---------CCCCCCccccccCCcEEEEEcCCCCCCCCCC--CcceEEEecCCcccccC
Q 012774 336 LVQAYGLTESTAGVFRTVGPD---------ECRRWGSTGRLSAGLEAKIVDPETGDSLPPG--KEGELSIRGPTIMKGYV 404 (456)
Q Consensus 336 i~~~yG~tE~~~~~~~~~~~~---------~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g--~~Gel~i~g~~~~~gy~ 404 (456)
+++.||+||++..+..+.... ......++|+|+|+++++|+| ++++.++.+ +.|||+++|+.++.||+
T Consensus 321 l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~ 399 (539)
T PRK07008 321 VIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDRYF 399 (539)
T ss_pred eecccccccccccceecccccccccCCchhhhhhcccCCccccceEEEEEC-CCCCccCCCCCcceEEEEeCCccchhhc
Confidence 999999999987554322110 011236789999999999999 667777753 57999999999999999
Q ss_pred CCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 405 GEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 405 ~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+++. ..+ .+|||+|||+|++|+||++++.||.||+||++|++|+|.||
T Consensus 400 ~~~~---~~~-~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eI 447 (539)
T PRK07008 400 RGDA---SPL-VDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDI 447 (539)
T ss_pred CChh---hhh-cCCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHH
Confidence 9883 344 37899999999999999999999999999999999999874
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-55 Score=441.84 Aligned_cols=406 Identities=29% Similarity=0.440 Sum_probs=332.5
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
-++.+++.+.++.+ |+++|+++. ++.+||.||.++++++|..|.+ .|+.+||+|+++++|+++++++++||++
T Consensus 21 ~~~~~~~~~~~~~~----p~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~-~gi~~g~~V~i~~~~~~~~~~~~la~~~ 93 (541)
T TIGR03205 21 GTLPDLLSKAAADY----GPRPALEFR--DRPITYTELEAMAETAAAALLR-AGYGKDASVALYLGNTPDHPINFFGALK 93 (541)
T ss_pred CCHHHHHHHHHHHc----CCCceEEEC--CcEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHh
Confidence 48999999999999 999999987 7899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccch--HHHHhc-----cCCeEEEEcCCc-------------------h
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSV--VHKLAK-----LKHRTILIDSPE-------------------F 171 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~--~~~~~~-----~~~~~~~~~~~~-------------------~ 171 (456)
+|++++|++|..+.+++.++++.++++++++++.. .....+ ....+++.+... +
T Consensus 94 ~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (541)
T TIGR03205 94 AGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTY 173 (541)
T ss_pred cCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhcccceEEEEecccccccccccccccCCCcccccH
Confidence 99999999999999999999999999999998632 111111 111222222111 1
Q ss_pred hhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCC-----CCCCCCcEEEEecchhhH
Q 012774 172 DSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS-----PKRVSPAVMLFTMPYFHI 246 (456)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~ 246 (456)
+++.... ..........+++.++++|||||||.||+|+++|+++....... ..+ ......+++++..|++|.
T Consensus 174 ~~~~~~~--~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~ 250 (541)
T TIGR03205 174 ADFVKGA--AAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICVLPLFHI 250 (541)
T ss_pred HHHHhcC--CCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEeccHHHH
Confidence 1111100 00111123456889999999999999999999999987654321 111 012345789999999999
Q ss_pred hhH-HHHHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHH
Q 012774 247 YGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIM 325 (456)
Q Consensus 247 ~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~ 325 (456)
+++ ..++.++..|+++++...++++.+++.|+++++|++.++|+++..+++........++++|.+++||+++++++.+
T Consensus 251 ~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~i~~gg~~~~~~~~~ 330 (541)
T TIGR03205 251 YALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEVAN 330 (541)
T ss_pred HHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccceEEEccccCCHHHHH
Confidence 888 4567888999999888888999999999999999999999999999876544455678999999999999999999
Q ss_pred HHHHhCCCCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEc-CCCCCCCCCCCcceEEEecCCcccccC
Q 012774 326 AFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVD-PETGDSLPPGKEGELSIRGPTIMKGYV 404 (456)
Q Consensus 326 ~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~~g~~Gel~i~g~~~~~gy~ 404 (456)
++.+.+ +.++++.||+||++..++.... ......+++|.|++++.++|++ .++++.++.|+.|||+++|+.++.||+
T Consensus 331 ~~~~~~-~~~~~~~YG~TE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~Gel~v~~~~~~~gy~ 408 (541)
T TIGR03205 331 FFERKT-GLKLKSGWGMTETCSPGTGHPP-EGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYW 408 (541)
T ss_pred HHHHHh-CCCeecccccccCCcccccCCC-CCCCCCCCcceeccCceeEEEecCCCCccCCCCCeeEEEEecCCcccccc
Confidence 998877 7899999999999876654322 2223457899999999988864 266788999999999999999999999
Q ss_pred CCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 405 GEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 405 ~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
++++.+.+.| .++||+|||++++++||++++.||.||+||++|++|+|.|+
T Consensus 409 ~~~~~~~~~~-~~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eI 459 (541)
T TIGR03205 409 NRPEESAEAF-VGDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMI 459 (541)
T ss_pred CChhhhHhhh-ccCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHH
Confidence 9999998888 47899999999999999999999999999999999999764
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-55 Score=439.94 Aligned_cols=401 Identities=20% Similarity=0.307 Sum_probs=334.6
Q ss_pred HHHhhhc-ccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhC
Q 012774 41 VDYVSSL-RATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG 119 (456)
Q Consensus 41 ~~~l~~~-~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~~G 119 (456)
.+++.++ ++.+ ||++|+++. +..+||.||.++++++|+.|.+ .|+++|++|+++++|+++++++++||+++|
T Consensus 7 ~~~~~~~~~~~~----p~~~a~~~~--~~~~ty~~l~~~~~~~a~~L~~-~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G 79 (508)
T TIGR02262 7 EDLLDRNVVEGR----GGKTAFIDD--ISSLSYGELEAQVRRLGAALRR-LGVKREERVLLLMLDGVDFPIAFLGAIRAG 79 (508)
T ss_pred HHHHHHHHhccc----CCceEEEeC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 4455554 4557 999999987 7899999999999999999998 899999999999999999999999999999
Q ss_pred CeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-----C-CeEEEEcCC-----chhhhhcccCCCccccccC
Q 012774 120 VIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----K-HRTILIDSP-----EFDSMTMSWNSKHELDRAK 188 (456)
Q Consensus 120 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 188 (456)
++++|+++..+.+++.++++.++++++++++.....+.+. . ..++..+.. .+.++..... .......
T Consensus 80 ~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 157 (508)
T TIGR02262 80 IVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLAELLATES--EQFKPAA 157 (508)
T ss_pred cEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCCcccccHHHHhhcCC--CccCCCC
Confidence 9999999999999999999999999999998766554321 1 122223221 1222221111 0111233
Q ss_pred CCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHH-hccCCCCCCCCcEEEEecchhhHhhH-HHHHHHhHhcceEEEec
Q 012774 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS-SFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQ 266 (456)
Q Consensus 189 ~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~~~~~ 266 (456)
..++++++++|||||||.||+|.++|+++...+.. ....+ +...+++++..+|++|..++ ..++.++..|+++++.+
T Consensus 158 ~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~ 236 (508)
T TIGR02262 158 TQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL-GIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMG 236 (508)
T ss_pred CCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhc-CCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeC
Confidence 45689999999999999999999999999877765 23333 67888999999999999888 55667888999888875
Q ss_pred -CCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCcccc
Q 012774 267 -RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES 345 (456)
Q Consensus 267 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~ 345 (456)
.+++..+++.|+++++|+++++|.++..++...........++|.+++||+++++++.+.|++.+ ++++++.||+||+
T Consensus 237 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~ 315 (508)
T TIGR02262 237 ERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARF-GVDIVDGIGSTEM 315 (508)
T ss_pred CCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccccccccccceeEEEcCCCCCHHHHHHHHHHh-CCchhhCcccccc
Confidence 46899999999999999999999999888766443334567899999999999999999999998 8899999999999
Q ss_pred ccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccce
Q 012774 346 TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDL 425 (456)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl 425 (456)
+.++..+. ......+++|+|++++.++|+| +++.++++|+.|||+++|+.++.||+++++.+...| .++||+|||+
T Consensus 316 ~~~~~~~~--~~~~~~~~~G~~~~g~~v~i~d-~~~~~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~-~~~~~~TGD~ 391 (508)
T TIGR02262 316 LHIFLSNL--PGDVRYGTSGKPVPGYRLRLVG-DGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTF-QGEWTRSGDK 391 (508)
T ss_pred CceeecCC--ccCCCCCCcCCCCCCcEEEEEC-CCCCCCCCCCeeEEEEecCccccccCCCHHHhHhhh-hcCceeccce
Confidence 87655422 2223457899999999999999 889999999999999999999999999999998888 5899999999
Q ss_pred EEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 426 CYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 426 ~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
++++++|.+++.||.||+||++|.+|+|.|+
T Consensus 392 ~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~i 422 (508)
T TIGR02262 392 YVRNDDGSYTYAGRTDDMLKVSGIYVSPFEI 422 (508)
T ss_pred EEEcCCccEEEeccccceeeeCCEEECHHHH
Confidence 9999999999999999999999999999764
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-55 Score=447.51 Aligned_cols=409 Identities=22% Similarity=0.305 Sum_probs=333.3
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECC-CCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSV-TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~-~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
+|+.++|...+..+ |+++|+++.. .++.+||+||.++++++|..|.+..|+++||+|+++++|+++++++++||+
T Consensus 10 ~~~~~~l~~~a~~~----~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~ 85 (576)
T PRK05620 10 LSLTRILEYGSTVH----GDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVA 85 (576)
T ss_pred CcHHHHHHHHHHhC----CCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 79999999999988 9999998652 347999999999999999999854799999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-----CC-eEEEEcCCc----------------hhhh
Q 012774 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KH-RTILIDSPE----------------FDSM 174 (456)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~-~~~~~~~~~----------------~~~~ 174 (456)
++|++++|+++..+.+++.++++.++++++|+++.....+.+. .. .++.++... |.++
T Consensus 86 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 165 (576)
T PRK05620 86 CMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEAL 165 (576)
T ss_pred hcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHH
Confidence 9999999999999999999999999999999998766554321 11 133333211 2222
Q ss_pred hcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHh--ccCCCCCCCCcEEEEecchhhHhhHHHH
Q 012774 175 TMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS--FASSPKRVSPAVMLFTMPYFHIYGLFFC 252 (456)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~g~~~~ 252 (456)
..... .........++++++++|||||||.||+|.++|+++....... ...+ ....++++++.+|++|.+++...
T Consensus 166 ~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~-~~~~~~~~l~~~pl~h~~g~~~~ 242 (576)
T PRK05620 166 LDGRS--TVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSL-AVTHGESFLCCVPIYHVLSWGVP 242 (576)
T ss_pred hhcCC--CcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhc-CCCCCCeEEEeCChHHhhhhHHH
Confidence 22111 0111233456899999999999999999999999986544332 2233 56788999999999999999888
Q ss_pred HHHhHhcceEEEec-CCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhC
Q 012774 253 FRAAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKF 331 (456)
Q Consensus 253 ~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~ 331 (456)
+.++..|+++++.. .+++..+++.|+++++|+++++|+++..++...........++|.+++||+++++++.+.|++.+
T Consensus 243 ~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~ 322 (576)
T PRK05620 243 LAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERY 322 (576)
T ss_pred HHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcccCceeEEEEcCCCCCHHHHHHHHHHh
Confidence 88999999988875 57999999999999999999999999988765433333456899999999999999999999988
Q ss_pred CCCceEeccCccccccccccccCCCC------CCCCCccccccCCcEEEEEcCCCCCCCC--CCCcceEEEecCCccccc
Q 012774 332 PKVVLVQAYGLTESTAGVFRTVGPDE------CRRWGSTGRLSAGLEAKIVDPETGDSLP--PGKEGELSIRGPTIMKGY 403 (456)
Q Consensus 332 ~~~~i~~~yG~tE~~~~~~~~~~~~~------~~~~~~~G~~~~~~~~~i~d~~~~~~~~--~g~~Gel~i~g~~~~~gy 403 (456)
+.++++.||+||++..+........ .....++|++.++++++++| + +..++ .+..|||+++|+.++.||
T Consensus 323 -~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~-g~~~~~~~~~~Gel~v~g~~~~~gY 399 (576)
T PRK05620 323 -GVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVN-D-GQVMESTDRNEGEIQVRGNWVTASY 399 (576)
T ss_pred -CCceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEec-C-CccccCCCCCceEEEEEcCcccccc
Confidence 7899999999999876554322110 01124789999999999999 4 65554 468899999999999999
Q ss_pred CCCcccc----------------ccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 404 VGEPEVT----------------SATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 404 ~~~~~~~----------------~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+++++.+ ...+..+|||+|||+|++++||++++.||.||+||++|++|+|.||
T Consensus 400 ~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eI 468 (576)
T PRK05620 400 YHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQL 468 (576)
T ss_pred cCCccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHH
Confidence 9999877 2334457899999999999999999999999999999999999764
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-55 Score=439.38 Aligned_cols=403 Identities=23% Similarity=0.327 Sum_probs=339.5
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
+|+.+.|.+.+..+ |+++|+.+. ++++||.||.++++++|..|.+ .|+.+|++|+++++|+.+++++++||++
T Consensus 2 ~~~~~~l~~~a~~~----p~~~~~~~~--~~~~t~~~l~~~~~~~a~~l~~-~g~~~~~~v~~~~~~~~~~~~~~~a~~~ 74 (503)
T PRK04813 2 MDIIETIEEFAQTQ----PDFPAYDYL--GEKLTYGQLKEDSDALAAFIDS-LKLPDKSPIIVFGHMSPEMLATFLGAVK 74 (503)
T ss_pred chHHHHHHHHHHhC----CCceEEEeC--CcEEeHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 57899999999988 999999987 7899999999999999999999 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccCCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEEE
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 197 (456)
+|++++|+++..+.+.+.++++..++++++++++... .......+.. .++....... ..........+++.+++
T Consensus 75 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~i 148 (503)
T PRK04813 75 AGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPL--EILGIPVITL--DELKDIFATG--NPYDFDHAVKGDDNYYI 148 (503)
T ss_pred cCCEEecCCCCChHHHHHHHHHhcCCCEEEecccccc--cccCCcEEeh--HHhhhhhhcc--ccccccccCCCCCcEEE
Confidence 9999999999999999999999999999999876521 1111122211 1111111000 00111223466889999
Q ss_pred EcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecC---CCHHHHH
Q 012774 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKMML 274 (456)
Q Consensus 198 ~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~---~~~~~~~ 274 (456)
+|||||||.||+|.++|+++..........+ .....++++...|++|..++..++.++..|+++++.+. .++..++
T Consensus 149 ~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~ 227 (503)
T PRK04813 149 IFTSGTTGKPKGVQISHDNLVSFTNWMLEDF-ALPEGPQFLNQAPYSFDLSVMDLYPTLASGGTLVALPKDMTANFKQLF 227 (503)
T ss_pred EECCCCCCCCcEEEeehHHHHHHHHHHHHHc-CCCcCceeeecCCcchhHhHHHHHHHHhcCCEEEEcChhhhcCHHHHH
Confidence 9999999999999999999998877766666 67888999999999999988888899999999998874 5889999
Q ss_pred HHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccC
Q 012774 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (456)
Q Consensus 275 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~ 354 (456)
+.++++++|++..+|+++..+..........++++|.++++|+++++.+.+++.+.+++..+++.||+||++..+.....
T Consensus 228 ~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~ 307 (503)
T PRK04813 228 ETLPQLPINVWVSTPSFADMCLLDPSFNEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEI 307 (503)
T ss_pred HHHHHcCCeEEEeChHHHHHHHHhhccCcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEe
Confidence 99999999999999999988766544445568899999999999999999999999988999999999999765543222
Q ss_pred CC---CCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCC-C--CeeeccceEEE
Q 012774 355 PD---ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP-D--GWMRTGDLCYI 428 (456)
Q Consensus 355 ~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~-~--g~~~TGDl~~~ 428 (456)
.. ......++|++.++++++|+| +++..++.|+.|||+++|+.++.||+++++.+.+.|.. + +||+|||+|++
T Consensus 308 ~~~~~~~~~~~~~g~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~ 386 (503)
T PRK04813 308 TDEMLDQYKRLPIGYAKPDSPLLIID-EEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL 386 (503)
T ss_pred cccccccCCCCcccccCCCCEEEEEC-CCCCCCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe
Confidence 11 123345799999999999999 78899999999999999999999999999988887632 3 59999999999
Q ss_pred ccCCcEEEecccccceeeCCeeecCCCC
Q 012774 429 DEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 429 ~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
++|++++.||.||+||++|++|+|.|+
T Consensus 387 -~~g~~~~~GR~~d~i~~~G~~v~~~~i 413 (503)
T PRK04813 387 -EDGLLFYQGRIDFQIKLNGYRIELEEI 413 (503)
T ss_pred -eCCeEEEeccccceEEECcEEeCHHHH
Confidence 999999999999999999999999764
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-55 Score=449.70 Aligned_cols=403 Identities=24% Similarity=0.335 Sum_probs=315.1
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECC-------CCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSV-------TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI 110 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~-------~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~ 110 (456)
+++.+.|.+.+..+ |+++|+++.+ ..+++||+||.++++++|+.|.+ .| .+||+|+++++|++++++
T Consensus 1 ~s~~~~l~~~a~~~----p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~-~g-~~gd~V~l~~~n~~~~~~ 74 (578)
T PRK05850 1 SSVPSLLRERASLQ----PDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRR-HG-STGDRAVILAPQGLEYIV 74 (578)
T ss_pred CcHHHHHHHHHhcC----CCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHH-hC-CCCCEEEEEcCCcccHHH
Confidence 46888999999988 9999998632 12689999999999999999998 88 689999999999999999
Q ss_pred HHHHHHHhCCeEecCCC---CCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-------CC-eEEEEcCCchhhhhcccC
Q 012774 111 LYFSLLSLGVIISPANP---VNTESEISRQIQLSNPVIAFATSSVVHKLAKL-------KH-RTILIDSPEFDSMTMSWN 179 (456)
Q Consensus 111 ~~la~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~ 179 (456)
+++||+++|++++|+++ ..+.+++.++++.+++++++++++....+... .. .++.++...+ ...
T Consensus 75 ~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-- 149 (578)
T PRK05850 75 AFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLLDL---DSP-- 149 (578)
T ss_pred HHHHHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccccc---ccC--
Confidence 99999999999999997 45788999999999999999998776655421 11 1222221110 000
Q ss_pred CCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCC-----CCCCCcEEEEecchhhHhhH-HHHH
Q 012774 180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP-----KRVSPAVMLFTMPYFHIYGL-FFCF 253 (456)
Q Consensus 180 ~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~g~-~~~~ 253 (456)
. .........+++++++|||||||.||+|.++|+++..++........ ....++++++++|++|..|+ ..++
T Consensus 150 -~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~ 227 (578)
T PRK05850 150 -R-GSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLVLGVC 227 (578)
T ss_pred -C-ccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCchhHHHHH
Confidence 0 11122345689999999999999999999999999877655433220 13567899999999999998 5578
Q ss_pred HHhHhcceEEEecC----CCHHHHHHHHHHhcceeEEecHHHH-HHHhcCCC---CCCCCCCCceEEEecCCCCCHHHHH
Q 012774 254 RAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIV-VAMSKGGS---TDGYDLSSLETVACGAAPLGKDTIM 325 (456)
Q Consensus 254 ~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~-~~l~~~~~---~~~~~l~~lr~v~~gG~~~~~~~~~ 325 (456)
.++..|+++++.+. .++..+++.+++++++.. .+|..+ ..+..... ....+++++|.+++||+++++++.+
T Consensus 228 ~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~ 306 (578)
T PRK05850 228 APILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLDLGGVLGIISGSERVHPATLK 306 (578)
T ss_pred HHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcchhhheeEEECcCCCCHHHHH
Confidence 89999999998864 278999999999999865 555554 33333211 1234578999999999999999999
Q ss_pred HHHHhCC-----CCceEeccCccccccccccccCCCCC-----------------------CCCCccccccCCcEEEEEc
Q 012774 326 AFASKFP-----KVVLVQAYGLTESTAGVFRTVGPDEC-----------------------RRWGSTGRLSAGLEAKIVD 377 (456)
Q Consensus 326 ~~~~~~~-----~~~i~~~yG~tE~~~~~~~~~~~~~~-----------------------~~~~~~G~~~~~~~~~i~d 377 (456)
+|.+.|+ +..+++.||+||++..+......... ....++|.|. +.+++|+|
T Consensus 307 ~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd 385 (578)
T PRK05850 307 RFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVD 385 (578)
T ss_pred HHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEc
Confidence 9988762 35789999999987544321110000 0011345543 57899999
Q ss_pred CCCCCCCCCCCcceEEEecCCcccccCCCccccccccCC-----------CCeeeccceEEEccCCcEEEecccccceee
Q 012774 378 PETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP-----------DGWMRTGDLCYIDEDGFLFIVDRLKDLIKY 446 (456)
Q Consensus 378 ~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~-----------~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~ 446 (456)
++++.+++.|+.|||+++|+.++.||+++++.+.+.|.. ++||+|||+|+++ ||++++.||.||+||+
T Consensus 386 ~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~ 464 (578)
T PRK05850 386 PDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIV 464 (578)
T ss_pred CCCCcCCCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEE
Confidence 777889999999999999999999999999999988842 5799999999997 9999999999999999
Q ss_pred CCeeecCCCC
Q 012774 447 KGYQVLPLLN 456 (456)
Q Consensus 447 ~G~~v~p~e~ 456 (456)
+|++|+|.||
T Consensus 465 ~G~~i~p~eI 474 (578)
T PRK05850 465 DGRNHYPDDI 474 (578)
T ss_pred CCeecCHHHH
Confidence 9999999875
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-55 Score=440.42 Aligned_cols=406 Identities=22% Similarity=0.333 Sum_probs=330.1
Q ss_pred CCCHHHHhhhcccCCCCCCCCCcEEEEC--CCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHH
Q 012774 37 PISAVDYVSSLRATLPWRDDDTVALINS--VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS 114 (456)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~A~~~~--~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la 114 (456)
++++.+++.+.++++ |++++++.. ...+++||+||.++++++|+.|.+ .|+++||+|+++++|+++++++++|
T Consensus 9 ~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~-~g~~~gd~v~i~~~~~~~~~~~~la 83 (542)
T PRK06018 9 PLLCHRIIDHAARIH----GNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDR-DGIKLGDRVATIAWNTWRHLEAWYG 83 (542)
T ss_pred CCCHHHHHHHHHHhC----CCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchHHHHHHHH
Confidence 379999999999999 999999853 123789999999999999999999 8999999999999999999999999
Q ss_pred HHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-----CC-eEEEEcCC------------chhhhhc
Q 012774 115 LLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KH-RTILIDSP------------EFDSMTM 176 (456)
Q Consensus 115 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~-~~~~~~~~------------~~~~~~~ 176 (456)
|+++|++++|+++..+.+++.++++.+++++++++.+....+.+. .. .++++... .+.++..
T Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (542)
T PRK06018 84 IMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMPQTTLKNAVAYEEWIA 163 (542)
T ss_pred HHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEecccccccccCccccccHHHHhc
Confidence 999999999999999999999999999999999998766554321 11 12222211 1222211
Q ss_pred ccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHH-HHHH-HhccCCCCCCCCcEEEEecchhhHhhHHHHHH
Q 012774 177 SWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLT-AAVA-SSFASSPKRVSPAVMLFTMPYFHIYGLFFCFR 254 (456)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~-~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~ 254 (456)
.... .........+++++++|||||||.||+|++||++.. .... .....+ +...+++++...|++|.+++...+.
T Consensus 164 ~~~~--~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~p~~h~~~~~~~~~ 240 (542)
T PRK06018 164 EADG--DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL-GTSAADTMLPVVPLFHANSWGIAFS 240 (542)
T ss_pred cCCc--ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhc-CCCCCCEEEEecCHHHHhhhHHHHh
Confidence 1110 111123456789999999999999999999999743 2222 222333 5678899999999999998877778
Q ss_pred HhHhcceEEEec-CCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCC
Q 012774 255 AAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPK 333 (456)
Q Consensus 255 ~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~ 333 (456)
++..|+++++.. .+++..+++.++++++|++.++|+++..+.+.......+++++|.+++||++++++++++|++ + +
T Consensus 241 ~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~-~-~ 318 (542)
T PRK06018 241 APSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFED-M-G 318 (542)
T ss_pred hhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHH-h-C
Confidence 889999988874 578999999999999999999999999998876655667889999999999999999999999 6 8
Q ss_pred CceEeccCccccccccccccCCCC---------CCCCCccccccCCcEEEEEcCCCCCCCCCC--CcceEEEecCCcccc
Q 012774 334 VVLVQAYGLTESTAGVFRTVGPDE---------CRRWGSTGRLSAGLEAKIVDPETGDSLPPG--KEGELSIRGPTIMKG 402 (456)
Q Consensus 334 ~~i~~~yG~tE~~~~~~~~~~~~~---------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g--~~Gel~i~g~~~~~g 402 (456)
.++++.||+||++.+++.+..... .....++|+|.++++++|+| ++++.++.+ ..|||+++|+.++.|
T Consensus 319 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~~~~~~~Gel~i~g~~~~~g 397 (542)
T PRK06018 319 VEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAVAAA 397 (542)
T ss_pred CCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEEC-CCCCCCCCCCCceeEEEEecCCcchh
Confidence 999999999999877654321111 01235789999999999999 667777653 679999999999999
Q ss_pred cCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 403 YVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 403 y~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|++. +...++.+|||+|||+++++++|++++.||.||+||++|++|+|.|+
T Consensus 398 y~~~---~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eI 448 (542)
T PRK06018 398 YYRV---DGEILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDL 448 (542)
T ss_pred hhcC---cccEecCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHH
Confidence 9984 23445568999999999999999999999999999999999999764
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-54 Score=438.39 Aligned_cols=408 Identities=30% Similarity=0.467 Sum_probs=334.4
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.++.+++...++++ |+++|+++. ++++||+||.++++++|..|.+..|+++|++|+++++|+++++++++||++
T Consensus 23 ~~l~~~l~~~a~~~----p~~~a~~~~--~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 96 (560)
T PRK08974 23 QSLVDMFEQAVARY----ADQPAFINM--GEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILR 96 (560)
T ss_pred ccHHHHHHHHHHhC----CCCceEEEC--CccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 57999999999988 999999987 789999999999999999998437999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhc----cCCeEEEEcC-Cc----------------------
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----LKHRTILIDS-PE---------------------- 170 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~----~~~~~~~~~~-~~---------------------- 170 (456)
+|++++|++|..+.+++.++++.+++++++++++....+.+ .....+.+.. ..
T Consensus 97 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (560)
T PRK08974 97 AGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVP 176 (560)
T ss_pred cCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhcCcceEEEecccccccccccccccchhhhcccccc
Confidence 99999999999999999999999999999998765443321 1111111110 00
Q ss_pred ---------hhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCC--CCCCCcEEEE
Q 012774 171 ---------FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP--KRVSPAVMLF 239 (456)
Q Consensus 171 ---------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~--~~~~~~~~~~ 239 (456)
+.+...... ...........+++++++|||||||.||+|.++|.++..++......+. .....+.++.
T Consensus 177 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 255 (560)
T PRK08974 177 KYHLPDAISFRSALHKGR-RMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVT 255 (560)
T ss_pred cccCCCcccHHHHhhccC-CCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEE
Confidence 000000000 0001112245689999999999999999999999999876654332221 2345678889
Q ss_pred ecchhhHhhH-HHHHHHhHhcceEEEec-CCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCC
Q 012774 240 TMPYFHIYGL-FFCFRAAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAA 317 (456)
Q Consensus 240 ~~p~~~~~g~-~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~ 317 (456)
.+|++|.+++ ...+.++..|+++++.. ..++..+++.++++++|++.++|+++..+..........++++|.+++||+
T Consensus 256 ~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~ 335 (560)
T PRK08974 256 ALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSVGGGM 335 (560)
T ss_pred eCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccceeEEEecCc
Confidence 9999999887 44666778888876664 568899999999999999999999999998876555566789999999999
Q ss_pred CCCHHHHHHHHHhCCCCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecC
Q 012774 318 PLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP 397 (456)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~ 397 (456)
++++.+.+.|++.+ +..+++.||+||++..+..+.. ......+++|.|+|++.++|+| +++..++.|+.|||+++|+
T Consensus 336 ~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~~Gel~v~g~ 412 (560)
T PRK08974 336 AVQQAVAERWVKLT-GQYLLEGYGLTECSPLVSVNPY-DLDYYSGSIGLPVPSTEIKLVD-DDGNEVPPGEPGELWVKGP 412 (560)
T ss_pred cCCHHHHHHHHHHh-CCcEEeeecccccCceeeccCC-CCcccCCccccCcCCCEEEEEC-CCCCCCCCCCceEEEEecC
Confidence 99999999999987 8999999999999877665432 2223457899999999999999 5789999999999999999
Q ss_pred CcccccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 398 TIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 398 ~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
.++.||+++++.+.+.| .+|||+|||+++++++|++++.||.||+|+++|.+|+|.|+
T Consensus 413 ~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~I 470 (560)
T PRK08974 413 QVMLGYWQRPEATDEVI-KDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEI 470 (560)
T ss_pred CcchhhcCChhhhhhhh-hcCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHH
Confidence 99999999999988888 68999999999999999999999999999999999999764
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=424.41 Aligned_cols=379 Identities=26% Similarity=0.325 Sum_probs=322.0
Q ss_pred cHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEcc
Q 012774 71 SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATS 150 (456)
Q Consensus 71 Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 150 (456)
||.||.+.++++|+.|.++.|+++||+|+++++|+++++++++||+++|++++|+++..+.+.+.++++.++++++++++
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 79999999999999999757999999999999999999999999999999999999999999999999999999999998
Q ss_pred chHHHHhccCCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCC
Q 012774 151 SVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK 230 (456)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~ 230 (456)
+....+.......+....... ....... ...........+++++++|||||||.||+|.++|+++..........+ .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTtG~pK~v~~s~~~~~~~~~~~~~~~-~ 157 (408)
T TIGR01733 81 ALASRLAGLVLPIILVDPLEL-AALDDAP-APPPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRY-G 157 (408)
T ss_pred chhhhccccCCceEEechhhh-hhccccc-ccccccCCCCCCCcEEEEEcCCCCCCCCEEEeccHHHHHHHHHHHHhc-C
Confidence 877766544333333332111 1111100 001111124568899999999999999999999999998888877766 6
Q ss_pred CCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecCCC---HHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCC
Q 012774 231 RVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFD---LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS 307 (456)
Q Consensus 231 ~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 307 (456)
....+++++..|++|.+++..++.++..|+++++.+... +..+.+.++++++|.+.++|.+++.+.+... ..++
T Consensus 158 ~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~~---~~~~ 234 (408)
T TIGR01733 158 LDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNLTPSLLALLAAALP---PALA 234 (408)
T ss_pred CCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEeCHHHHHHHHHhhh---hccc
Confidence 778899999999999999988999999999999887543 6899999999999999999999999998754 5678
Q ss_pred CceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccCCCC-CC--CCCccccccCCcEEEEEcCCCCCCC
Q 012774 308 SLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDE-CR--RWGSTGRLSAGLEAKIVDPETGDSL 384 (456)
Q Consensus 308 ~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~-~~--~~~~~G~~~~~~~~~i~d~~~~~~~ 384 (456)
++|.+++||+++++++++.+.+.+++..+++.||+||++.++........ .. +..++|.|+++++++|++++ ++.+
T Consensus 235 ~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~-~~~~ 313 (408)
T TIGR01733 235 SLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLDDD-LRPV 313 (408)
T ss_pred CceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEECCC-CCCC
Confidence 99999999999999999999999966999999999999887653221111 11 26789999999999999954 8999
Q ss_pred CCCCcceEEEecCCcccccCCCccccccccCCC------C--eeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 385 PPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD------G--WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 385 ~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~------g--~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+.|+.|||+++|++++.||+++++.+.+.|..+ | ||+|||+|++|++|++++.||.||+|+++|++|+|.|+
T Consensus 314 ~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~i 393 (408)
T TIGR01733 314 PVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEI 393 (408)
T ss_pred CCCCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEeCeEEechHHH
Confidence 999999999999999999999999888877443 2 99999999999999999999999999999999999874
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-54 Score=435.26 Aligned_cols=407 Identities=24% Similarity=0.343 Sum_probs=327.1
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
++..+.+.+.++.+ |+++|+.+. +..+||+||.++++++|..|.+ .|+++||+|+++++|+++++++++||++
T Consensus 18 ~~~~~~~~~~~~~~----~~~~a~~~~--~~~~ty~~L~~~~~~~a~~L~~-~g~~~g~~v~i~~~~~~~~~~~~lA~~~ 90 (545)
T PRK08162 18 LTPLSFLERAAEVY----PDRPAVIHG--DRRRTWAETYARCRRLASALAR-RGIGRGDTVAVLLPNIPAMVEAHFGVPM 90 (545)
T ss_pred CCHHHHHHHHHHHC----CCCeEEEEC--CeEEEHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCchHHHHHHHHHHH
Confidence 68899999999988 999999987 7899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhc----cC-CeEEEEcCC-------------chhhhhcccC
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----LK-HRTILIDSP-------------EFDSMTMSWN 179 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~----~~-~~~~~~~~~-------------~~~~~~~~~~ 179 (456)
+|++++|+++..+.+++.++++.+++++++++++....+.+ .. .+.+.++.. +++++.....
T Consensus 91 ~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (545)
T PRK08162 91 AGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGALDYEAFLASGD 170 (545)
T ss_pred hCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCceEEEecCccccccCCCcccccHHHHhccCC
Confidence 99999999999999999999999999999999877655432 11 112222211 1222221111
Q ss_pred CCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhc
Q 012774 180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALM 259 (456)
Q Consensus 180 ~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G 259 (456)
.. .........++.++++|||||||.||+|+++|+++........... ....++++++.+|++|..++...+.....|
T Consensus 171 ~~-~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~-~~~~~~~~l~~~pl~h~~~~~~~~~~~~~~ 248 (545)
T PRK08162 171 PD-FAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAW-GMPKHPVYLWTLPMFHCNGWCFPWTVAARA 248 (545)
T ss_pred cc-ccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-CCCCCCeeEeccCcHhhhhHHHHHHHHHHc
Confidence 00 0111122345789999999999999999999998876655544444 466788999999999999885555555667
Q ss_pred ceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEec
Q 012774 260 ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (456)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~ 339 (456)
++.++...+++..+++.++++++|++.++|+++..|.+........+.+.+.++++|+.+++++.+.+++. +.++++.
T Consensus 249 g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~ 326 (545)
T PRK08162 249 GTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPPAAVIAKMEEI--GFDLTHV 326 (545)
T ss_pred cEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCCccceEEEECCCCCCHHHHHHHHHh--CCceeec
Confidence 77777778899999999999999999999999999988654433445667778899999999999998875 8899999
Q ss_pred cCccccccccccccCCCC---------CCCCCccccccCC-cEEEEEcCCCCCCCCC-C-CcceEEEecCCcccccCCCc
Q 012774 340 YGLTESTAGVFRTVGPDE---------CRRWGSTGRLSAG-LEAKIVDPETGDSLPP-G-KEGELSIRGPTIMKGYVGEP 407 (456)
Q Consensus 340 yG~tE~~~~~~~~~~~~~---------~~~~~~~G~~~~~-~~~~i~d~~~~~~~~~-g-~~Gel~i~g~~~~~gy~~~~ 407 (456)
||+||+++.+..+..... .....+.|.+.+. ..++|+|++++++++. | +.|||+++|+.++.||++++
T Consensus 327 YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~ 406 (545)
T PRK08162 327 YGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNP 406 (545)
T ss_pred ccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCCh
Confidence 999998654443211110 0112456666553 3688999778888876 3 46999999999999999999
Q ss_pred cccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 408 EVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 408 ~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+.+...| .+|||+|||+|++|+||+++++||.||+||++|++|+|.||
T Consensus 407 ~~~~~~~-~~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eI 454 (545)
T PRK08162 407 KATEEAF-AGGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEV 454 (545)
T ss_pred hhhHHHh-hCCCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHH
Confidence 9999888 58999999999999999999999999999999999999764
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-54 Score=431.72 Aligned_cols=395 Identities=25% Similarity=0.339 Sum_probs=323.0
Q ss_pred hcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecC
Q 012774 46 SLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPA 125 (456)
Q Consensus 46 ~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~~G~~~v~l 125 (456)
..++++ |+++|+++..+++.+||.||.++++++|+.|.+ .|+++|++|+++++++++++++++||+++|++++++
T Consensus 5 ~~a~~~----p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~-~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l 79 (511)
T PRK13391 5 IHAQTT----PDKPAVIMASTGEVVTYRELDERSNRLAHLFRS-LGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCV 79 (511)
T ss_pred hhHhhC----CCceEEEecCCCCEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEecc
Confidence 455666 999999986557899999999999999999998 899999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc----C--CeEEEEcC-C---c---hhhhhcccCCCccccccCCCCC
Q 012774 126 NPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----K--HRTILIDS-P---E---FDSMTMSWNSKHELDRAKVCQS 192 (456)
Q Consensus 126 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~--~~~~~~~~-~---~---~~~~~~~~~~~~~~~~~~~~~~ 192 (456)
++.++.+.+.++++.++++++++++.....+.+. . ...+.+.. . . +.+.... .........+
T Consensus 80 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 154 (511)
T PRK13391 80 NSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGELEGFVGYAEAVAG-----LPATPIADES 154 (511)
T ss_pred ccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCCCcccccHHHHhcC-----CCCCCCCCcc
Confidence 9999999999999999999999987665543211 1 12222221 0 0 1111110 0111112344
Q ss_pred CEEEEEcCCCCCCCCchhcc--cHHHHHHH---HHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecC
Q 012774 193 DVAAIMYSSGTTGRVKGVML--THRNLTAA---VASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR 267 (456)
Q Consensus 193 ~~a~i~~TSGtTG~PK~V~~--th~~l~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~ 267 (456)
+.++++|||||||.||+|.+ +|.++... .......+ .....+++++.+|++|.+++...+.++..|+++++.+.
T Consensus 155 ~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~h~~~~~~~~~~~~~g~~~~~~~~ 233 (511)
T PRK13391 155 LGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLW-GFRSDMVYLSPAPLYHSAPQRAVMLVIRLGGTVIVMEH 233 (511)
T ss_pred cccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhc-CCCCCCeEEEcCCHHHHHHHHHHHHHHHcCceEEECCC
Confidence 67899999999999999995 46554322 22223333 46778999999999999998777889999999999998
Q ss_pred CCHHHHHHHHHHhcceeEEecHHHHHHHhcCCC--CCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCcccc
Q 012774 268 FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES 345 (456)
Q Consensus 268 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~ 345 (456)
++++.+++.++++++|++.++|+++..+.+... ....+++++|.+++||+++++++.+.+++.+ +..+++.||+||+
T Consensus 234 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~-g~~v~~~YG~tE~ 312 (511)
T PRK13391 234 FDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWW-GPIIHEYYAATEG 312 (511)
T ss_pred CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHHc-CCceeeeeccccc
Confidence 999999999999999999999999998876532 2234578999999999999999999999988 7889999999999
Q ss_pred ccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCC-Ceeeccc
Q 012774 346 TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD-GWMRTGD 424 (456)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~-g~~~TGD 424 (456)
+.+.... ........+++|+|+++ .++|+| +++.+++.|+.|||+++|+ ++.||+++++.+.+.+..+ +||+|||
T Consensus 313 ~~~~~~~-~~~~~~~~~~vG~~~~g-~~~i~d-~~~~~~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD 388 (511)
T PRK13391 313 LGFTACD-SEEWLAHPGTVGRAMFG-DLHILD-DDGAELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGD 388 (511)
T ss_pred cceEEec-CccccccCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCC
Confidence 8765432 22223455789999999 699999 7789999999999999999 8899999999998887655 8999999
Q ss_pred eEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 425 l~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+|+++++|.+++.||.||++|++|++|+|.|+
T Consensus 389 ~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~ei 420 (511)
T PRK13391 389 IGYVDEDGYLYLTDRAAFMIISGGVNIYPQEA 420 (511)
T ss_pred EEEECCCccEEEeccCCCEEEeCCEEECHHHH
Confidence 99999999999999999999999999999864
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-54 Score=468.98 Aligned_cols=403 Identities=21% Similarity=0.281 Sum_probs=327.1
Q ss_pred CCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
..++.+.+.+.+++++ |++.|+.+. +++++||+||.++++++|+.|++ |+++||+|+++++|+++++++++||+
T Consensus 630 ~~~~~~~l~~~~~~~~---~~~~ai~~~-~~~~~Ty~el~~~~~~lA~~L~~--g~~~gd~V~i~~~n~~~~~~~~la~~ 703 (1140)
T PRK06814 630 DRTLFEALIEAAKIHG---FKKLAVEDP-VNGPLTYRKLLTGAFVLGRKLKK--NTPPGENVGVMLPNANGAAVTFFALQ 703 (1140)
T ss_pred cCCHHHHHHHHHHHcC---CCCeEeECC-CCCccCHHHHHHHHHHHHHHHHh--cCCCCCeEEEEcCCchHHHHHHHHHH
Confidence 3678888888888882 456777653 36799999999999999999965 99999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHH------hc--cCCeEEEEcCCc-----hhhhhcccC-CCc
Q 012774 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKL------AK--LKHRTILIDSPE-----FDSMTMSWN-SKH 182 (456)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~------~~--~~~~~~~~~~~~-----~~~~~~~~~-~~~ 182 (456)
++|++++|+++..+.+++.++++++++++++++++..... .+ ...+++.++... ++.+..... ...
T Consensus 704 ~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1140)
T PRK06814 704 SAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQIGLADKIKGLLAGRFP 783 (1140)
T ss_pred HCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccCChHHHHHHHhhccCC
Confidence 9999999999999999999999999999999987654322 11 122344443211 000000000 000
Q ss_pred cccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhH-HHHHHHhHhcce
Q 012774 183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMET 261 (456)
Q Consensus 183 ~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~ 261 (456)
........++++++++|||||||.||+|.++|+++..+.......+ ...++|++++.+|++|.+++ ..++.++..|++
T Consensus 784 ~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~ 862 (1140)
T PRK06814 784 LVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-DFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVK 862 (1140)
T ss_pred ccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhh-CCCCcCEEEEecchHHHHHHHHHHHHHHHcCCE
Confidence 1111134678999999999999999999999999998888777766 67889999999999999998 667889999999
Q ss_pred EEEecC-CCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEecc
Q 012774 262 AVVMQR-FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAY 340 (456)
Q Consensus 262 ~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~y 340 (456)
+++.+. .+...+.+.++++++|++.++|+++..+.+.. ...+++++|.+++||+++++++.+.+.+.+ +.++++.|
T Consensus 863 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~~~~~~lr~v~~gg~~l~~~~~~~~~~~~-~~~~~~~Y 939 (1140)
T PRK06814 863 VFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA--HPYDFRSLRYVFAGAEKVKEETRQTWMEKF-GIRILEGY 939 (1140)
T ss_pred EEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc--ccccccceeEEEEcCCcCCHHHHHHHHHHh-CCcEEecc
Confidence 988864 56778899999999999999999999987753 345678999999999999999999999988 88999999
Q ss_pred CccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCee
Q 012774 341 GLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWM 420 (456)
Q Consensus 341 G~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~ 420 (456)
|+||++..+.... +...+.+++|+|+|++++++++.+ + .++.|||+++|+.++.||+++++........+|||
T Consensus 940 G~TE~~~~~~~~~--~~~~~~~~vG~p~~g~~~~~~~~~-~----~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~ 1012 (1140)
T PRK06814 940 GVTETAPVIALNT--PMHNKAGTVGRLLPGIEYRLEPVP-G----IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWY 1012 (1140)
T ss_pred ccccccceEEecC--CCCCCCCcCCccCCCCeEEEeecC-C----CCCceEEEEeCCCcchhhcCCCCCCccccCCCCeE
Confidence 9999987665422 223456799999999999998732 2 35779999999999999998765432222358999
Q ss_pred eccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 421 RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 421 ~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+|||+|++|+||++++.||.||+||++|++|+|.|+
T Consensus 1013 ~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eI 1048 (1140)
T PRK06814 1013 DTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAV 1048 (1140)
T ss_pred ecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHH
Confidence 999999999999999999999999999999999874
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-54 Score=439.58 Aligned_cols=404 Identities=22% Similarity=0.300 Sum_probs=321.4
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCC--CceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVT--GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL 115 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~--~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~ 115 (456)
.++.+++...++.+ |+.++ ++.+. .+.+||.||.++++++|.+|.+ .|+++||+|+++++|+++++++++||
T Consensus 21 ~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~-~gi~~gd~V~l~~~n~~~~~~~~lA~ 94 (579)
T PRK09192 21 PTLVEALDYAALGE----AGMNF-YDRRGQLEEALPYQTLRARAEAGARRLLA-LGLKPGDRVALIAETDGDFVEAFFAC 94 (579)
T ss_pred hhHHHHHHHhhccC----CceEE-EecCCCEEEEecHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCchhHHHHHHHH
Confidence 48999999998887 75544 44322 2679999999999999999998 89999999999999999999999999
Q ss_pred HHhCCeEecCCCCCC-------HHHHHHHhhhcCCeEEEEccchHHHHhcc--CCe-EEEEcCCchhhhhcccCCCcccc
Q 012774 116 LSLGVIISPANPVNT-------ESEISRQIQLSNPVIAFATSSVVHKLAKL--KHR-TILIDSPEFDSMTMSWNSKHELD 185 (456)
Q Consensus 116 ~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~ 185 (456)
+++|++++|+++..+ .+++.++++.++++++++++.....+... ... .... .+..+...... ...
T Consensus 95 ~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~ 169 (579)
T PRK09192 95 QYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNPLLHVL---SHAWFKALPEA--DVA 169 (579)
T ss_pred HHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhcccccccee---ehhhhcccCCC--ccc
Confidence 999999999986443 58999999999999999998776555432 111 1111 12222211111 111
Q ss_pred ccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhcc-CCCCCCCCcEEEEecchhhHhhHH-HHHHHhHhcceEE
Q 012774 186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA-SSPKRVSPAVMLFTMPYFHIYGLF-FCFRAAALMETAV 263 (456)
Q Consensus 186 ~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~g~~-~~~~~l~~G~~~~ 263 (456)
.....++++++++|||||||.||+|.++|+++..+...... .+ +..++|+++.++|++|.+++. .++.++..|++++
T Consensus 170 ~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~ 248 (579)
T PRK09192 170 LPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGL-KVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVD 248 (579)
T ss_pred cCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcc-cCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeE
Confidence 22346689999999999999999999999999988776666 45 678899999999999999985 4556788888887
Q ss_pred EecC----CCHHHHHHHHHHhcceeEEecHHHHHHHhcCCC---CCCCCCCCceEEEecCCCCCHHHHHHHHHhCC--C-
Q 012774 264 VMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS---TDGYDLSSLETVACGAAPLGKDTIMAFASKFP--K- 333 (456)
Q Consensus 264 ~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~--~- 333 (456)
+.+. .++..+++.+.++++++++.+|..+..+..... ....+++++|.+++||+++++++.+.+.+.++ +
T Consensus 249 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~ 328 (579)
T PRK09192 249 YLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGF 328 (579)
T ss_pred eeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecCccCCHHHHHHHHHHHHhcCC
Confidence 7652 368899999999999987776655555443221 22356889999999999999999999998763 1
Q ss_pred --CceEeccCccccccccccccCCCC--------------------------CCCCCccccccCCcEEEEEcCCCCCCCC
Q 012774 334 --VVLVQAYGLTESTAGVFRTVGPDE--------------------------CRRWGSTGRLSAGLEAKIVDPETGDSLP 385 (456)
Q Consensus 334 --~~i~~~yG~tE~~~~~~~~~~~~~--------------------------~~~~~~~G~~~~~~~~~i~d~~~~~~~~ 385 (456)
..+++.||+||++..++....... .....++|+|+|+++++|+| ++++.++
T Consensus 329 ~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~~~~ 407 (579)
T PRK09192 329 DDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGMPLP 407 (579)
T ss_pred ChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC-CCCCCCC
Confidence 358999999999766543221100 00124789999999999999 6688899
Q ss_pred CCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 386 PGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 386 ~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
.|+.|||+++|+.++.||+++ ..+.+.+..++||+|||+|++ ++|+++++||.||+||++|++|+|.|+
T Consensus 408 ~g~~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~v~p~eI 476 (579)
T PRK09192 408 ERVVGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDI 476 (579)
T ss_pred CCCEEEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEEEEeccccEEEECCCccCHHHH
Confidence 999999999999999999999 667777778999999999999 999999999999999999999999874
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=400.46 Aligned_cols=410 Identities=26% Similarity=0.320 Sum_probs=335.9
Q ss_pred CCCCCHHHHhhhcccCCCCCCCCCcEEEEC----------CCC-----------ceecHHHHHHHHHHHHHHhHhhcCCC
Q 012774 35 DAPISAVDYVSSLRATLPWRDDDTVALINS----------VTG-----------LRVSFSEFTRRTNSLASYLQNVTRLS 93 (456)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~p~~~A~~~~----------~~~-----------~~~Ty~eL~~~~~~~a~~L~~~~gi~ 93 (456)
+..-|+++++.+..+++ .++.++-.- .+| +.+||.|+.+++.++|++|.+ +|++
T Consensus 38 ~g~~Tl~~~~~~~~~k~----g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~-lG~k 112 (678)
T KOG1180|consen 38 PGASTLYELFEECVKKF----GKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYERVHNFGSGLVK-LGLK 112 (678)
T ss_pred CCcccHHHHHHHHHHhc----CCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHHHHHHHHHHHH-hCCC
Confidence 55679999999999999 788876310 011 469999999999999999999 9999
Q ss_pred CCCE-EEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-----CC-eEEEE
Q 012774 94 KNDT-AFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KH-RTILI 166 (456)
Q Consensus 94 ~gd~-V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~-~~~~~ 166 (456)
+++. |+|+++.+.+|..+.+||++.+..+|.+...+..+.+.|-|.++++..+|++.+.+.++... .+ .+|..
T Consensus 113 ~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~~vk~II~~ 192 (678)
T KOG1180|consen 113 PKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLKAPLKQAKTVKHIIYF 192 (678)
T ss_pred CCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHHHHHhccCceeEEEEe
Confidence 7777 99999999999999999999999999999999999999999999999999999998876521 12 23444
Q ss_pred cCC--------------------chhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhcc
Q 012774 167 DSP--------------------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA 226 (456)
Q Consensus 167 ~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~ 226 (456)
+.- +++++...+... ..++.++.++|+|+|+|||||||.||||+++|.|+++.+.....
T Consensus 193 d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~-~~~~~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~ 271 (678)
T KOG1180|consen 193 DPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKEN-EIPPHPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGE 271 (678)
T ss_pred cCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcC-CCCCCCCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhcc
Confidence 421 133333333222 12334457899999999999999999999999999999999999
Q ss_pred CCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecCCCHHH--------HHHHHHHhcceeEEecHHHHHHHhcC
Q 012774 227 SSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKM--------MLKAVEEFRVTHAAVTPPIVVAMSKG 298 (456)
Q Consensus 227 ~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~--------~~~~i~~~~~t~~~~~P~~~~~l~~~ 298 (456)
..+.+.+.|+++.++|+.|++.+.+-+.+++-|+.+-..+..+... .-..+...+||++.++|.+++++.+.
T Consensus 272 ~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKg 351 (678)
T KOG1180|consen 272 NVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKG 351 (678)
T ss_pred cCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHHHHHHH
Confidence 8888899999999999999999998899999999988775322111 11234568999999999999877543
Q ss_pred CCCC-----------------------CCC-------------------CCCceEEEecCCCCCHHHHHHHHHhCCCCce
Q 012774 299 GSTD-----------------------GYD-------------------LSSLETVACGAAPLGKDTIMAFASKFPKVVL 336 (456)
Q Consensus 299 ~~~~-----------------------~~~-------------------l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i 336 (456)
...+ ..+ =.++|++++||++++++..+.+.-.+ .+++
T Consensus 352 Vl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~-C~Pv 430 (678)
T KOG1180|consen 352 VLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICF-CCPV 430 (678)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhc-cccc
Confidence 2100 000 04789999999999999999988888 7899
Q ss_pred EeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCC--cceEEEecCCcccccCCCcccccccc
Q 012774 337 VQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGK--EGELSIRGPTIMKGYVGEPEVTSATL 414 (456)
Q Consensus 337 ~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~--~Gel~i~g~~~~~gy~~~~~~~~~~~ 414 (456)
.++||.||+++.++.. +..+...+.+|.|++.++++++|-+++.-.+.+. .|||+|+|+++..||+++++.|++.|
T Consensus 431 ~qGYGLTEtca~~tv~--e~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~f 508 (678)
T KOG1180|consen 431 LQGYGLTETCAAATVL--EPEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDF 508 (678)
T ss_pred cccccccchhcccEec--ChhhcccccccCCccceEEEEEEhhhcCccCCCCCCCceEEecCCccChhhhCChhhhhhhc
Confidence 9999999998877653 3344566899999999999999966665444443 79999999999999999999999999
Q ss_pred CC-CC--eeeccceEEEccCCcEEEecccccceee-CCeeecC
Q 012774 415 LP-DG--WMRTGDLCYIDEDGFLFIVDRLKDLIKY-KGYQVLP 453 (456)
Q Consensus 415 ~~-~g--~~~TGDl~~~~~dg~l~~~GR~~d~ik~-~G~~v~p 453 (456)
.. +| ||+|||+|.+++||.|.|++|++|++|. +|+-|+.
T Consensus 509 t~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL 551 (678)
T KOG1180|consen 509 TVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISL 551 (678)
T ss_pred eecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeeh
Confidence 87 88 9999999999999999999999999998 6998874
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-53 Score=429.04 Aligned_cols=403 Identities=24% Similarity=0.318 Sum_probs=326.3
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
+|+.+++.+.++++ |+++|+++. ++.+||.||.++++++|+.|.+ .|+++||+|+++++|+++++++++||++
T Consensus 3 ~~l~~~~~~~a~~~----p~~~a~~~~--~~~~ty~el~~~~~~la~~L~~-~g~~~~~~v~v~~~n~~~~~~~~~a~~~ 75 (533)
T PRK07798 3 WNIADLFEAVADAV----PDRVALVCG--DRRLTYAELEERANRLAHYLIA-QGLGPGDHVGIYARNRIEYVEAMLGAFK 75 (533)
T ss_pred ccHHHHHHHHHHhC----CCceEEEEC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHh
Confidence 68999999999999 999999997 8899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-----CC-eEEEEcCC----------chhhhhcccCCC
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KH-RTILIDSP----------EFDSMTMSWNSK 181 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~-~~~~~~~~----------~~~~~~~~~~~~ 181 (456)
+|++++|+++.++.+++.++++.++++++++++.....+.+. .. .++.++.. .++++......
T Consensus 76 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 154 (533)
T PRK07798 76 ARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVDYEDALAAGSP- 154 (533)
T ss_pred cCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCcccccCCccccHHHHHhccCC-
Confidence 999999999999999999999999999999998766555432 11 23333321 23333222111
Q ss_pred ccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCC--------------CCCCCCcEEEEecchhhHh
Q 012774 182 HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--------------PKRVSPAVMLFTMPYFHIY 247 (456)
Q Consensus 182 ~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~p~~~~~ 247 (456)
... ......+.++++|||||||.||+|+++|+++..........+ .....+++++..+|++|..
T Consensus 155 -~~~-~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 232 (533)
T PRK07798 155 -ERD-FGERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGA 232 (533)
T ss_pred -cCC-CCCCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhh
Confidence 111 112233457899999999999999999999876554322211 0114668999999999999
Q ss_pred hHHHHHHHhHhcceEEEec--CCCHHHHHHHHHHhcceeEEecHHHHH-HHhcCCC-CCCCCCCCceEEEecCCCCCHHH
Q 012774 248 GLFFCFRAAALMETAVVMQ--RFDLKMMLKAVEEFRVTHAAVTPPIVV-AMSKGGS-TDGYDLSSLETVACGAAPLGKDT 323 (456)
Q Consensus 248 g~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~-~l~~~~~-~~~~~l~~lr~v~~gG~~~~~~~ 323 (456)
++..++.++..|+++++.+ .+++..+++.++++++|.+.++|..+. .+.+... ....+++++|.+++||+++++++
T Consensus 233 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~i~~gG~~~~~~~ 312 (533)
T PRK07798 233 GQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIASGGALFSPSV 312 (533)
T ss_pred hHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCceEEEEECCCCCCHHH
Confidence 9988999999999999998 789999999999999999999986553 3333322 23456789999999999999999
Q ss_pred HHHHHHhCCCCceEeccCccccccccccccCCCCCCCCCccc--cccCCcEEEEEcCCCCCCCCCCCc--ceEEEecCCc
Q 012774 324 IMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTG--RLSAGLEAKIVDPETGDSLPPGKE--GELSIRGPTI 399 (456)
Q Consensus 324 ~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G--~~~~~~~~~i~d~~~~~~~~~g~~--Gel~i~g~~~ 399 (456)
.+++.+.+++..+++.||+||++.+...... .. ....| .+.++..++|++ +++++++.|+. |+|+ .++.+
T Consensus 313 ~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~-~~---~~~~g~~~~~~~~~~~i~~-~~~~~~~~g~~~~g~l~-~~~~~ 386 (533)
T PRK07798 313 KEALLELLPNVVLTDSIGSSETGFGGSGTVA-KG---AVHTGGPRFTIGPRTVVLD-EDGNPVEPGSGEIGWIA-RRGHI 386 (533)
T ss_pred HHHHHHHcCCCeEEeeecccccccccccCCC-CC---CccCCCCccCCCceEEEEC-CCCCCCCCCCCCeeEEE-eecCc
Confidence 9999999888999999999999765543211 11 12333 788999999999 66778998877 6665 55678
Q ss_pred ccccCCCccccccccCC---CCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 400 MKGYVGEPEVTSATLLP---DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 400 ~~gy~~~~~~~~~~~~~---~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+.||++++..+.+.|.. ++||+|||++++|+||++++.||.||+||++|++|+|.||
T Consensus 387 ~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eI 446 (533)
T PRK07798 387 PLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEV 446 (533)
T ss_pred cccccCChhhhHHhhccCCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHH
Confidence 99999999998888743 3599999999999999999999999999999999999874
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-53 Score=426.30 Aligned_cols=385 Identities=27% Similarity=0.371 Sum_probs=318.0
Q ss_pred cEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHh
Q 012774 59 VALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQI 138 (456)
Q Consensus 59 ~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l 138 (456)
.|+++. ++.+||.||.++++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++++++..+.+++.+++
T Consensus 3 ~~~~~~--~~~~Ty~el~~~~~~la~~l~~-~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l 79 (509)
T PRK12406 3 ATIISG--DRRRSFDELAQRAARAAGGLAA-LGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYIL 79 (509)
T ss_pred eEEEEC--CeeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHH
Confidence 367766 7899999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred hhcCCeEEEEccchHHHHhcc---CCeEEEEcCC---------------------chhhhhcccCCCccccccCCCCCCE
Q 012774 139 QLSNPVIAFATSSVVHKLAKL---KHRTILIDSP---------------------EFDSMTMSWNSKHELDRAKVCQSDV 194 (456)
Q Consensus 139 ~~~~~~~vi~~~~~~~~~~~~---~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (456)
+.+++++++++......+... ....+..... ++++.... .........+++
T Consensus 80 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 154 (509)
T PRK12406 80 EDSGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQ-----QEPYDGPPVPQP 154 (509)
T ss_pred hccCCcEEEEccchhhhhhhhhhcccceeecccccccccccccccccccCCCCccCHHHHhcc-----cCccCCCCCCCc
Confidence 999999999988766654321 1112211110 01111100 011122356889
Q ss_pred EEEEcCCCCCCCCchhcccHHHH---HHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecCCCHH
Q 012774 195 AAIMYSSGTTGRVKGVMLTHRNL---TAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLK 271 (456)
Q Consensus 195 a~i~~TSGtTG~PK~V~~th~~l---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~ 271 (456)
++++|||||||.||+|.++|... ..........+ +...++++++.+|++|..+....+.++..|+++++.+.++++
T Consensus 155 a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 233 (509)
T PRK12406 155 QSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIY-GLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPE 233 (509)
T ss_pred eEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhc-CCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHH
Confidence 99999999999999999876543 33333333344 567889999999999988876667778899999998888999
Q ss_pred HHHHHHHHhcceeEEecHHHHHHHhcCCC--CCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCcccccccc
Q 012774 272 MMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV 349 (456)
Q Consensus 272 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~ 349 (456)
.+++.++++++|++.++|+++..|++... ....+++++|.++.||+++++++++++.+.+ +..+++.||+||++.++
T Consensus 234 ~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~ 312 (509)
T PRK12406 234 ELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWW-GPVIYEYYGSTESGAVT 312 (509)
T ss_pred HHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHc-CCcEEeeccccccCceE
Confidence 99999999999999999999999987543 2345678999999999999999999999988 78899999999998765
Q ss_pred ccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCccc-ccCCCccccccccCCCCeeeccceEEE
Q 012774 350 FRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMK-GYVGEPEVTSATLLPDGWMRTGDLCYI 428 (456)
Q Consensus 350 ~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~-gy~~~~~~~~~~~~~~g~~~TGDl~~~ 428 (456)
+... .+....++++|.|+++++++++| +++++++.|+.|||+++|++++. ||+++++.+...+ .++||+|||+|++
T Consensus 313 ~~~~-~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~-~~~~~~TGD~~~~ 389 (509)
T PRK12406 313 FATS-EDALSHPGTVGKAAPGAELRFVD-EDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEID-RGGFITSGDVGYL 389 (509)
T ss_pred ecCc-ccccccCCCcCccCCCcEEEEEC-CCCCCCCCCCceEEEEECCccccccccCCchhccccc-CCCCeEEccEEEE
Confidence 5432 22233557899999999999999 67899999999999999998875 9999998887766 6899999999999
Q ss_pred ccCCcEEEecccccceeeCCeeecCCCC
Q 012774 429 DEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 429 ~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
++||++++.||.||+||++|++|+|.|+
T Consensus 390 ~~~g~~~~~GR~~d~ik~~G~~v~~~~I 417 (509)
T PRK12406 390 DADGYLFLCDRKRDMVISGGVNIYPAEI 417 (509)
T ss_pred cCCceEEEeecccceEEECCEEECHHHH
Confidence 9999999999999999999999999874
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-53 Score=426.53 Aligned_cols=386 Identities=29% Similarity=0.396 Sum_probs=319.3
Q ss_pred EEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhh
Q 012774 60 ALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQ 139 (456)
Q Consensus 60 A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~ 139 (456)
|++....++.+||+||.++++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++|+++..+.+++.++++
T Consensus 2 ~~~~~~~~~~~ty~el~~~v~~~a~~L~~-~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~ 80 (502)
T PRK08276 2 AVIMAPSGEVVTYGELEARSNRLAHGLRA-LGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVD 80 (502)
T ss_pred ceEecCCCcEEEHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHh
Confidence 44444448999999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEccchHHHHhcc------CCeEEEEcCC------chhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCC
Q 012774 140 LSNPVIAFATSSVVHKLAKL------KHRTILIDSP------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRV 207 (456)
Q Consensus 140 ~~~~~~vi~~~~~~~~~~~~------~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~P 207 (456)
..+++++++++.....+... ..+.+.+... .+++.... .........++.++++|||||||.|
T Consensus 81 ~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGtTG~P 155 (502)
T PRK08276 81 DSGAKVLIVSAALADTAAELAAELPAGVPLLLVVAGPVPGFRSYEEALAA-----QPDTPIADETAGADMLYSSGTTGRP 155 (502)
T ss_pred cCCCCEEEEccchhhHHHHHhhhccccccEEEEeCCCCCccccHHHHHhc-----CCCCCCCCCCcceEEEECCCCCCCC
Confidence 99999999998776654321 2222222211 12222111 1111223456789999999999999
Q ss_pred chhcccHHHHHHHH------HHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecCCCHHHHHHHHHHhc
Q 012774 208 KGVMLTHRNLTAAV------ASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFR 281 (456)
Q Consensus 208 K~V~~th~~l~~~~------~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~ 281 (456)
|+|.++|.++.... ....... ....++++++.+|++|.+++...+.++..|+++++.+.+++..+++.+++++
T Consensus 156 K~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~ 234 (502)
T PRK08276 156 KGIKRPLPGLDPDEAPGMMLALLGFGM-YGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIERYR 234 (502)
T ss_pred ceEEEccCCcchhhhhHHhhhhhhhcc-cCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHHhC
Confidence 99999887654322 1122222 2346789999999999999877778999999999998899999999999999
Q ss_pred ceeEEecHHHHHHHhcCCCC--CCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccCCCCCC
Q 012774 282 VTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECR 359 (456)
Q Consensus 282 ~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~ 359 (456)
+|++.++|+++..+++.... ...+++++|.+++||++++.++++++.+.+ +..+++.||+||++.+++... .....
T Consensus 235 ~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~-~~~~~ 312 (502)
T PRK08276 235 VTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWW-GPIIHEYYASSEGGGVTVITS-EDWLA 312 (502)
T ss_pred CeEEEehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHh-CcHhhhhcccccccceeEecC-ccccc
Confidence 99999999999999876532 345688999999999999999999999988 788999999999987554422 22234
Q ss_pred CCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEecc
Q 012774 360 RWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDR 439 (456)
Q Consensus 360 ~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR 439 (456)
..+++|+|+ +..++|+| +++.+++.|+.|||+++|+.++.||+++++.+.+.+.+++||+|||+|+++++|.+++.||
T Consensus 313 ~~~~~G~~~-~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR 390 (502)
T PRK08276 313 HPGSVGKAV-LGEVRILD-EDGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDR 390 (502)
T ss_pred cCCCcceec-ccEEEEEC-CCCCCCcCCCceEEEEECCCccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEecc
Confidence 557899999 88999999 6688999999999999999999999999999999997779999999999999999999999
Q ss_pred cccceeeCCeeecCCCC
Q 012774 440 LKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 440 ~~d~ik~~G~~v~p~e~ 456 (456)
.||+||++|++|+|.|+
T Consensus 391 ~~~~i~~~G~~v~~~~i 407 (502)
T PRK08276 391 KSDMIISGGVNIYPQEI 407 (502)
T ss_pred CcceEEeCCEEeCHHHH
Confidence 99999999999999764
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-53 Score=449.74 Aligned_cols=397 Identities=16% Similarity=0.184 Sum_probs=309.9
Q ss_pred CCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
.+|+.+++.+.++++ |+++|+++. ++++||+||.++++++|+.|.+ .|+++||+|+|+++|+++++++++||+
T Consensus 446 ~~sl~~ll~~~a~~~----pd~~Al~~~--~~~lTY~eL~~ra~rlA~~L~~-~Gv~~Gd~VaI~~~n~~e~v~a~lA~~ 518 (994)
T PRK07868 446 RISLGRIIAEQARDA----PKGEFLLFD--GRVHTYEAVNRRINNVVRGLIA-VGVRQGDRVGVLMETRPSALVAIAALS 518 (994)
T ss_pred CccHHHHHHHHHHHC----CCCeEEEeC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 379999999999999 999999987 7899999999999999999998 899999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccCCeEEEEcCCc--------hhhhhcc---cCCCcccc
Q 012774 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPE--------FDSMTMS---WNSKHELD 185 (456)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~---~~~~~~~~ 185 (456)
++|++++|++|. +++.++++.++++++|++++....+.....++++++... ....... .......+
T Consensus 519 ~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (994)
T PRK07868 519 RLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQLPGRVLVLGGGESRDLDLPDDADVIDMEKIDPDAVELP 595 (994)
T ss_pred hcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhcCceEEEecCCccccccCCcchhhhhhhhcCcccccCC
Confidence 999999999985 578999999999999999877766654444555553211 0000000 00000000
Q ss_pred ----ccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHH-HHhHhcc
Q 012774 186 ----RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCF-RAAALME 260 (456)
Q Consensus 186 ----~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~-~~l~~G~ 260 (456)
.....++++++++|| ||||.||++.++|.+...........+ .+..+|++++.+|++|.+++...+ .++..|+
T Consensus 596 ~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~-~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~ 673 (994)
T PRK07868 596 GWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAA-ALDRRDTVYCLTPLHHESGLLVSLGGAVVGGS 673 (994)
T ss_pred cccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhc-CCCCCCeEEEecChHHHhHHHHHHHHHhccce
Confidence 011235789999998 578888888888877654444444444 577899999999999999996555 4455555
Q ss_pred eEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEecc
Q 012774 261 TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAY 340 (456)
Q Consensus 261 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~y 340 (456)
++++.+.++++.+++.|+++++|+++++|+++..|++.......+++++|.++ |+.+++++++++.+.++++++++.|
T Consensus 674 ~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~Y 751 (994)
T PRK07868 674 RIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNHPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFF 751 (994)
T ss_pred EEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCCCceEEEe--cCCCCHHHHHHHHHHhCchheeeee
Confidence 56666789999999999999999999999999999886544445677899876 3449999999999999778999999
Q ss_pred CccccccccccccCCCCCCCCCccccccCCc-EEEEE--cC--------CCC--CCCCCCCcceEEEecCCcccccCCCc
Q 012774 341 GLTESTAGVFRTVGPDECRRWGSTGRLSAGL-EAKIV--DP--------ETG--DSLPPGKEGELSIRGPTIMKGYVGEP 407 (456)
Q Consensus 341 G~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~--d~--------~~~--~~~~~g~~Gel~i~g~~~~~gy~~~~ 407 (456)
|+||++..... . ...+.+++|+|++|+ +++|. |+ ++| +.++.|+.|||+++++.. + ++
T Consensus 752 G~TE~~~~~~~--~--~~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~----~-~p 822 (994)
T PRK07868 752 ATTDGQAVLAN--V--SGAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGP----I-DP 822 (994)
T ss_pred ecccccccccc--c--CCCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCC----C-Ch
Confidence 99998754332 1 123567999999998 66664 21 345 567889999999998753 3 33
Q ss_pred ccc--ccccC-CCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 408 EVT--SATLL-PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 408 ~~~--~~~~~-~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+.+ ...|. .+|||+|||+|++|+||+|+|+||+||+||++|.+|+|.||
T Consensus 823 ~~t~~~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EI 874 (994)
T PRK07868 823 TASVKRGVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPV 874 (994)
T ss_pred hhhhHhcccccCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHH
Confidence 322 22242 37999999999999999999999999999999999999875
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-53 Score=419.91 Aligned_cols=343 Identities=17% Similarity=0.197 Sum_probs=281.1
Q ss_pred eecHHHHHHHHHHHHHHhHhhcCC-CCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEE
Q 012774 69 RVSFSEFTRRTNSLASYLQNVTRL-SKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAF 147 (456)
Q Consensus 69 ~~Ty~eL~~~~~~~a~~L~~~~gi-~~gd~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 147 (456)
-+.|+||.++++++|+.|.+ .|+ ++|++|+++++|+++++++++||+++|++++|++|.++.+++.++++.+++++++
T Consensus 19 ~~~~~el~~~~~~~a~~L~~-~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i 97 (452)
T PRK07445 19 GYNSQRFYQLAQQLYLQLQQ-LATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIW 97 (452)
T ss_pred ecChHHHHHHHHHHHHHHHH-hcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEE
Confidence 46699999999999999999 887 5799999999999999999999999999999999999999999999999999999
Q ss_pred EccchHHHHhccCCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccC
Q 012774 148 ATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFAS 227 (456)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~ 227 (456)
++++..... .. . . ........+++.++++|||||||.||+|++||+++...+......
T Consensus 98 ~~~~~~~~~---------~~-----~----~----~~~~~~~~~~~~~~i~~TSGTTG~PKgV~~t~~~l~~~~~~~~~~ 155 (452)
T PRK07445 98 GLDQLKLSH---------PP-----P----L----PSQGILPNLETGWIMIPTGGSSGQIRFAIHTWETLTASVQGFQRY 155 (452)
T ss_pred ecCcccccc---------CC-----C----C----CccccCCCCCCcEEEEeCCCCCCCCcEEEechHHHHHHHHHHHHH
Confidence 876532110 00 0 0 000112356889999999999999999999999998877766655
Q ss_pred CCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCC
Q 012774 228 SPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS 307 (456)
Q Consensus 228 ~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 307 (456)
+ ...+ ++.++++|++|.+|+..++.++..|+++++.+..+.........++++++++++|+++..+++.. ...++
T Consensus 156 ~-~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~vP~~l~~l~~~~---~~~l~ 230 (452)
T PRK07445 156 F-QLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSLVPTQLQRLLQLR---PQWLA 230 (452)
T ss_pred h-cCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCceEEEehHHHHHHHHhhC---hhhhh
Confidence 5 3433 46788999999999988889999999999886432222234445788999999999999998632 23478
Q ss_pred CceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCC
Q 012774 308 SLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPG 387 (456)
Q Consensus 308 ~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g 387 (456)
++|.+++||+++++++.+.+++. ++++++.||+||++..+......+......++|+|+|+++++|+ .|
T Consensus 231 ~l~~i~~gG~~l~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~---------~g 299 (452)
T PRK07445 231 QFRTILLGGAPAWPSLLEQARQL--QLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIP---------AN 299 (452)
T ss_pred cceEEEECCccCCHHHHHHHHhc--CCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEc---------CC
Confidence 99999999999999999988764 88999999999997654432211112245689999999999997 35
Q ss_pred CcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 388 KEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 388 ~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+.|||+|+|+.++.||++++. ..+|||+|||+|++|+||++++.||.||+||++|+||+|.||
T Consensus 300 ~~Gel~v~g~~~~~gY~~~~~------~~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~~G~~V~p~eI 362 (452)
T PRK07445 300 QTGNITIQAQSLALGYYPQIL------DSQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEV 362 (452)
T ss_pred CcceEEEeCCccchhhcCCcc------CCCCEEECCCEEEEcCCCCEEEEeecCCEEEECCEEECHHHH
Confidence 679999999999999997532 247899999999999999999999999999999999999874
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-52 Score=424.96 Aligned_cols=401 Identities=23% Similarity=0.332 Sum_probs=321.4
Q ss_pred CHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHh
Q 012774 39 SAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSL 118 (456)
Q Consensus 39 ~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~~ 118 (456)
++.+.+...+..+ |+.+|+.+.+.++.+||.||.++++++|+.|.+ .|+++||+|+|+++|+++++++++||+++
T Consensus 3 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~-~g~~~gd~V~l~~~~~~~~~~~~la~~~~ 77 (545)
T PRK07768 3 RFTEKMYANARTS----PRGMVTGEPDAPVRHTWGEVHERARRIAGGLAA-AGVGPGDAVAVLAGAPVEIAPTAQGLWMR 77 (545)
T ss_pred hHHHHHHHHhhCC----CcceEEecCCCceEecHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCchHHHHHHHHHHHc
Confidence 5788888888888 999999887667899999999999999999999 89999999999999999999999999999
Q ss_pred CCeEecCCCCCCHHH-------HHHHhhhcCCeEEEEccchHHHHhcc---CCeEEEEcCCchhhhhcccCCCccccccC
Q 012774 119 GVIISPANPVNTESE-------ISRQIQLSNPVIAFATSSVVHKLAKL---KHRTILIDSPEFDSMTMSWNSKHELDRAK 188 (456)
Q Consensus 119 G~~~v~l~~~~~~~~-------l~~~l~~~~~~~vi~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (456)
|++++++++..+.++ +..+++.++++++++++......... ...++ .++++..... .....
T Consensus 78 g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~----~~~~~ 148 (545)
T PRK07768 78 GASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEEKGIRVL-----TVADLLAADP----IDPVE 148 (545)
T ss_pred CccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhcccCCcee-----ehhhhcccCC----CCcCC
Confidence 999999998877544 44567788999999987654433221 11121 2233322111 12234
Q ss_pred CCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCC-cEEEEecchhhHhhHH-HHHHHhHhcceEEEec
Q 012774 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSP-AVMLFTMPYFHIYGLF-FCFRAAALMETAVVMQ 266 (456)
Q Consensus 189 ~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~g~~-~~~~~l~~G~~~~~~~ 266 (456)
..++++++++|||||||.||+|+++|+++........... +.... |++++++|++|..++. .++.++..|+++++.+
T Consensus 149 ~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~ 227 (545)
T PRK07768 149 TGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAA-EFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVT 227 (545)
T ss_pred CCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhc-CCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeC
Confidence 5678999999999999999999999999988877666665 45554 8999999999999984 4667899999988875
Q ss_pred C----CCHHHHHHHHHHhcceeEEecHHHHHHHhcCC----CCCCCCCCCceEEEecCCCCCHHHHHHHHHh---C--CC
Q 012774 267 R----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG----STDGYDLSSLETVACGAAPLGKDTIMAFASK---F--PK 333 (456)
Q Consensus 267 ~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~---~--~~ 333 (456)
. .++..+++.+++++++++..+|..+..+.+.. .....+++++|.++++|+++++++.+.+.+. + +.
T Consensus 228 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~ 307 (545)
T PRK07768 228 PMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRP 307 (545)
T ss_pred HHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCc
Confidence 3 37788999999999999988887776665432 1224568899999999999999999999874 3 22
Q ss_pred CceEeccCccccccccccccCCC------------------------CCCCCCccccccCCcEEEEEcCCCCCCCCCCCc
Q 012774 334 VVLVQAYGLTESTAGVFRTVGPD------------------------ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKE 389 (456)
Q Consensus 334 ~~i~~~yG~tE~~~~~~~~~~~~------------------------~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~ 389 (456)
..+++.||+||++..+....... .....+++|+|+++++++|+| ++++.++.|+.
T Consensus 308 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~~~g~~ 386 (545)
T PRK07768 308 EAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVLPPRGV 386 (545)
T ss_pred ccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCCCCCCE
Confidence 35999999999987554321110 011335799999999999999 77899999999
Q ss_pred ceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 390 GELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 390 Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|||+++|+.++.||++.+.... .+..+|||+|||+|++++||+++++||.||+||++|++|+|.|+
T Consensus 387 Gel~v~~~~~~~gy~~~~~~~~-~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~ei 452 (545)
T PRK07768 387 GVIELRGESVTPGYLTMDGFIP-AQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDI 452 (545)
T ss_pred EEEEEccCcccccccCCCCCcc-cccCCCeeeccceEEEecCCEEEEEccccceEEECCEecCHHHH
Confidence 9999999999999998654433 33467899999999999999999999999999999999999764
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=416.34 Aligned_cols=359 Identities=21% Similarity=0.268 Sum_probs=302.8
Q ss_pred hcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecC
Q 012774 46 SLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPA 125 (456)
Q Consensus 46 ~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~~G~~~v~l 125 (456)
..+.++ |+++|+++. ++.+||+||.++++++|..|.+ .|+.+||+|+++++|+++++++++||+++|++++|+
T Consensus 11 ~~a~~~----~~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~-~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~~ 83 (458)
T PRK09029 11 HWAQVR----PQAIALRLN--DEVLTWQQLCARIDQLAAGFAQ-QGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPL 83 (458)
T ss_pred HHHHhC----CCceeeecC--CcceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEeec
Confidence 346667 999999987 8899999999999999999999 899999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccCCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEEEEcCCCCCC
Q 012774 126 NPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTG 205 (456)
Q Consensus 126 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG 205 (456)
++..+.+++..+++.+++++++++++... +.... ... .. . . .........++++++++|||||||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~--~~~-----~~---~--~--~~~~~~~~~~~~~a~i~~TSGTTG 148 (458)
T PRK09029 84 NPQLPQPLLEELLPSLTLDFALVLEGENT-FSALT--SLH-----LQ---L--V--EGAHAVAWQPQRLATMTLTSGSTG 148 (458)
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhhcc--ccc-----cc---c--c--cccCcccCCCCCeEEEEECCCCCC
Confidence 99999999999999999999998866432 11110 000 00 0 0 011122346788999999999999
Q ss_pred CCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecCCCHHHHHHHHHHhcceeE
Q 012774 206 RVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHA 285 (456)
Q Consensus 206 ~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~ 285 (456)
.||+|.++|+++..........+ ....+++++..+|++|.+++..++.++..|+++++.+. ..+++.+. ++|.+
T Consensus 149 ~PKgv~~s~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~h~~g~~~~~~~l~~G~~v~~~~~---~~~~~~i~--~~t~~ 222 (458)
T PRK09029 149 LPKAAVHTAQAHLASAEGVLSLM-PFTAQDSWLLSLPLFHVSGQGIVWRWLYAGATLVVRDK---QPLEQALA--GCTHA 222 (458)
T ss_pred CCCEEEEeHHHHHHHHHHHhhcC-CCCccceEEEecCcHhhhhhHHHHHHHhCCceEEeCCh---HHHHHHHh--hceee
Confidence 99999999999999888777776 67888999999999999998777788999999998764 45667774 78999
Q ss_pred EecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccCCCCCCCCCccc
Q 012774 286 AVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTG 365 (456)
Q Consensus 286 ~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G 365 (456)
..+|+++..+...... ..++|.+++||+++++++.+.+.+. +.++++.||+||++...+.... ....++|
T Consensus 223 ~~~P~~~~~l~~~~~~----~~~l~~i~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~~~~~~~~~----~~~~~~G 292 (458)
T PRK09029 223 SLVPTQLWRLLDNRSE----PLSLKAVLLGGAAIPVELTEQAEQQ--GIRCWCGYGLTEMASTVCAKRA----DGLAGVG 292 (458)
T ss_pred ecChHHHHHHHhcccc----CCcceEEEECCCCCCHHHHHHHHHc--CCcEeccccccccCcceeccCC----CCCCCCC
Confidence 9999999998876432 3479999999999999999998875 8999999999999865443211 1235699
Q ss_pred cccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEeccccccee
Q 012774 366 RLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIK 445 (456)
Q Consensus 366 ~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik 445 (456)
+|+++++++|++ |||+++|+.++.||+++++.+.... .+|||+|||+|++| ||++++.||.||+||
T Consensus 293 ~~~~~~~~~i~~------------gel~v~g~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~ 358 (458)
T PRK09029 293 SPLPGREVKLVD------------GEIWLRGASLALGYWRQGQLVPLVN-DEGWFATRDRGEWQ-NGELTILGRLDNLFF 358 (458)
T ss_pred CCCCCCEEEEeC------------CEEEEecCceeeeeecCcccccccc-CCCccCCCCcEEEe-CCEEEEeccccccee
Confidence 999999999987 8999999999999999988776543 58999999999999 999999999999999
Q ss_pred eCCeeecCCCC
Q 012774 446 YKGYQVLPLLN 456 (456)
Q Consensus 446 ~~G~~v~p~e~ 456 (456)
++|++|+|.|+
T Consensus 359 ~~G~~v~p~ei 369 (458)
T PRK09029 359 SGGEGIQPEEI 369 (458)
T ss_pred eCCEEeCHHHH
Confidence 99999999874
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-52 Score=416.37 Aligned_cols=351 Identities=18% Similarity=0.218 Sum_probs=272.6
Q ss_pred cCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccch---------HHHHhc-cCCeEEEEcC---
Q 012774 102 STNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSV---------VHKLAK-LKHRTILIDS--- 168 (456)
Q Consensus 102 ~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~-~~~~~~~~~~--- 168 (456)
++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.. ...+.. .....+++..
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE 80 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence 589999999999999999999999999999999999999999999998642 111111 1112222210
Q ss_pred ----------CchhhhhcccCC-----CccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCC
Q 012774 169 ----------PEFDSMTMSWNS-----KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVS 233 (456)
Q Consensus 169 ----------~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~ 233 (456)
..+.++...... ..........++++++++|||||||.||+|++||+++..........+ ....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~~~ 159 (499)
T PLN03051 81 PVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHM-DIQP 159 (499)
T ss_pred ccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhc-CCCC
Confidence 123333211000 000111122458999999999999999999999999877665544444 5678
Q ss_pred CcEEEEecchhhHhhHHHHHHHhHhcceEEEecC-CCHHHHHHHHHHhcceeEEecHHHHHHHhcCCC--CCCCCCCCce
Q 012774 234 PAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR-FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLE 310 (456)
Q Consensus 234 ~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr 310 (456)
+|++++.+|++|..++..++.++..|+++++.+. +++..+++.|+++++|++.++|+++..|++... ....+++++|
T Consensus 160 ~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~~~~Lr 239 (499)
T PLN03051 160 GDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKLR 239 (499)
T ss_pred CCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCCchhhe
Confidence 8999999999999998778889999999998874 788999999999999999999999999987643 3345688999
Q ss_pred EEEecCCCCCHHHHHHHHHhCC-CCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCC--
Q 012774 311 TVACGAAPLGKDTIMAFASKFP-KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPG-- 387 (456)
Q Consensus 311 ~v~~gG~~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g-- 387 (456)
.+++||+++++++.+++++.++ +.++++.||+||++....... .......+++|+|.++++++|+| +++++++.|
T Consensus 240 ~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~ 317 (499)
T PLN03051 240 VFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISST-LLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQP 317 (499)
T ss_pred EEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeeccc-ccCCCCCccccCCCCCceEEEEC-CCCCCCCCCCC
Confidence 9999999999999987777431 478999999999865433211 11223457899999999999999 778889888
Q ss_pred CcceEEEecCCc--ccccCCCccccccccCC--------CCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 388 KEGELSIRGPTI--MKGYVGEPEVTSATLLP--------DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 388 ~~Gel~i~g~~~--~~gy~~~~~~~~~~~~~--------~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+.|||+++|+.+ +.||++++. ++..++. .+||+|||+|++|+||+|+|+||.||+||++|+||+|.||
T Consensus 318 ~~Gel~v~g~~~~~~~gy~~~~~-~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~EI 395 (499)
T PLN03051 318 CVGEVALAPPMLGASDRLLNADH-DKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEI 395 (499)
T ss_pred cceEEEEecCcCCCCccccCCcc-cceeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHHH
Confidence 579999999976 579997653 3322211 1279999999999999999999999999999999999885
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-51 Score=403.24 Aligned_cols=358 Identities=26% Similarity=0.371 Sum_probs=299.1
Q ss_pred cHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEcc
Q 012774 71 SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATS 150 (456)
Q Consensus 71 Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 150 (456)
||+||.++++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++|+++..+.+.+..+++..+++++++++
T Consensus 1 Ty~~l~~~~~~~a~~l~~-~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 79 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKA-QGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDS 79 (436)
T ss_pred CHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999999 8999999999999999999999999999999999999999999999999999999999987
Q ss_pred chHHHHhccCCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCC
Q 012774 151 SVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK 230 (456)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~ 230 (456)
...... +. ...+..+....... .........+++++++|||||||.||+|.++|+++...+......+ +
T Consensus 80 ~~~~~~-------~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-~ 148 (436)
T TIGR01923 80 LLEEKD-------FQ--ADSLDRIEAAGRYE-TSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENL-G 148 (436)
T ss_pred cccccc-------ee--ecchHhhhhccccc-ccccccCCcCceEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHhhc-C
Confidence 642111 00 01111111111100 1112234567899999999999999999999999998888877777 6
Q ss_pred CCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCce
Q 012774 231 RVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLE 310 (456)
Q Consensus 231 ~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr 310 (456)
..++|++++.+|++|..++..++.++..|+++++.+.++ .+++.++++++|++.++|+++..+++..... +++|
T Consensus 149 ~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~--~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~----~~l~ 222 (436)
T TIGR01923 149 FTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFN--QLLEMIANERVTHISLVPTQLNRLLDEGGHN----ENLR 222 (436)
T ss_pred CCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchHH--HHHHHHHHhCCeEEEeHHHHHHHHHhCcCCC----CceE
Confidence 888999999999999999888889999999999987653 9999999999999999999999998865322 6899
Q ss_pred EEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcc
Q 012774 311 TVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEG 390 (456)
Q Consensus 311 ~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~G 390 (456)
.+++||+++++++.+.+++. +..+++.||+||++.............+ .++|+|++++++++...+. ++.|
T Consensus 223 ~~~~~G~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~-~~~G~~~~~~~~~i~~~~~------~~~G 293 (436)
T TIGR01923 223 KILLGGSAIPAPLIEEAQQY--GLPIYLSYGMTETCSQVTTATPEMLHAR-PDVGRPLAGREIKIKVDNK------EGHG 293 (436)
T ss_pred EEEECCCCCCHHHHHHHHHh--CCceeeEecCCccchhccCcCccccccc-cCCCccCCCcEEEEEeCCC------CCce
Confidence 99999999999999988875 8999999999999876554332222222 3599999999999944232 2679
Q ss_pred eEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 391 ELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 391 el~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
||+++|+.++.||+++++.+...+ .++||+|||+|++++||++++.||.||+||++|++|+|.|+
T Consensus 294 el~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~i 358 (436)
T TIGR01923 294 EIMVKGANLMKGYLYQGELTPAFE-QQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEI 358 (436)
T ss_pred EEEEECCccchhhCCChhhhhhhh-cCCCeeccceEEEcCCCCEEEeccccCeEEeCCEeeCHHHH
Confidence 999999999999999887776655 57999999999999999999999999999999999999764
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=368.11 Aligned_cols=407 Identities=23% Similarity=0.288 Sum_probs=328.6
Q ss_pred CCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
..++.+++.++++++ |+++|+++.+..+++||+|+.+.++++|+.|.. .|++.||+|+|+++|.+|++.+|||++
T Consensus 76 ~~ti~~~F~~~vrr~----p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~-~~l~~GD~VAL~men~pefv~lWlGLa 150 (649)
T KOG1179|consen 76 RRTIAELFLSQVRRQ----PDKPAIIYEGPFQSLTFAELDARSNRVANYLHA-EGLKAGDVVALLMENRPEFVALWLGLA 150 (649)
T ss_pred CCcHHHHHHHHHHhC----CCccEEEEeCCCceeeHHHHHHHHHHHHHHHHH-hhcccCCEEEEecCCChhHHHHHHhHH
Confidence 379999999999999 999999998667899999999999999999999 899999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-------CCeEEEEcCC----chhhhhcccCCCc--c
Q 012774 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-------KHRTILIDSP----EFDSMTMSWNSKH--E 183 (456)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-------~~~~~~~~~~----~~~~~~~~~~~~~--~ 183 (456)
++|++...||++..-+.|.|.++.++++++|++++..+.+.+. .+.+...+.. ..+++....+... +
T Consensus 151 KlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~~g~~~L~~~l~~~~~~~ 230 (649)
T KOG1179|consen 151 KLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVPDGIESLLAKLSAAPKHP 230 (649)
T ss_pred hhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCCchHHHHHHhhcccccCC
Confidence 9999999999999999999999999999999999988777644 2223333211 1333333222111 1
Q ss_pred ---ccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhH-HHHHHHhHhc
Q 012774 184 ---LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALM 259 (456)
Q Consensus 184 ---~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G 259 (456)
.......-.++++.+|||||||.||+.+++|.............+ ++..+|+++.++|++|..+. ..+..++..|
T Consensus 231 vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~-g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~G 309 (649)
T KOG1179|consen 231 VPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVF-GMTADDVVYTTLPLYHSAAGILGIGGCLLHG 309 (649)
T ss_pred CCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-CCCccceEEEcchhHHHHHHHHHHHHHHhcC
Confidence 111233446789999999999999999999999877776566666 89999999999999999887 7788999999
Q ss_pred ceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEec
Q 012774 260 ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (456)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~ 339 (456)
+++++-.+|+...+|+.+.++++|++.-.--+++-|++.+......-..+|..+ |..+.+++++.|.+.|...+|.+.
T Consensus 310 aT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~ 387 (649)
T KOG1179|consen 310 ATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQHKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEF 387 (649)
T ss_pred ceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcCceEEEEe--cCCCCchHHHHHHHHcCCCeEEEE
Confidence 999999999999999999999999999999999999998766555555677766 788999999999999966679999
Q ss_pred cCccccccccccccCCCCCCCCCcccc------ccCCcEEEEEcCCCCC----------CCCCCCcceEE--EecCCc--
Q 012774 340 YGLTESTAGVFRTVGPDECRRWGSTGR------LSAGLEAKIVDPETGD----------SLPPGKEGELS--IRGPTI-- 399 (456)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~~~G~------~~~~~~~~i~d~~~~~----------~~~~g~~Gel~--i~g~~~-- 399 (456)
||+||...-... .+ ...|.+|+ -+--+++-=+|+++++ ++++||.|.++ |.....
T Consensus 388 YgaTEgn~~~~N-~d----~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~ 462 (649)
T KOG1179|consen 388 YGATEGNSNLVN-YD----GRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLR 462 (649)
T ss_pred eccccCcceeee-ec----CccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchh
Confidence 999997654332 11 12233332 2222333334555654 46789999775 333344
Q ss_pred -ccccCCCccccccccCC------CCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 400 -MKGYVGEPEVTSATLLP------DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 400 -~~gy~~~~~~~~~~~~~------~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+.||.+++..+++.... |-||.|||+-.+|+.|++||.+|..|.+..+|++|+-.|+
T Consensus 463 ~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEV 526 (649)
T KOG1179|consen 463 SFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEV 526 (649)
T ss_pred hhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHH
Confidence 88999988777766432 4499999999999999999999999999999999997764
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-50 Score=388.98 Aligned_cols=415 Identities=22% Similarity=0.257 Sum_probs=335.6
Q ss_pred CCCCCHHHHhhhcccCCCCCCCCCcEEEECC----CCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHH
Q 012774 35 DAPISAVDYVSSLRATLPWRDDDTVALINSV----TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI 110 (456)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~p~~~A~~~~~----~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~ 110 (456)
....|..+.+..+..... .++.+|+++.. +...+||.|+.+++.++|..|.+ +|+++||+|++++|..+++++
T Consensus 60 g~~ln~~~n~~~~~~~~~--~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~-~g~~kGD~V~~~mPm~~e~~i 136 (626)
T KOG1175|consen 60 GAFLNACYNCLDRHIKEK--GGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRK-CGLKKGDTVAIYMPMIPEAVI 136 (626)
T ss_pred cchhhhhHhhhhhhhhhc--CCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHh-cCCCCCcEEEEeccCChHHHH
Confidence 455677777776653331 27888887642 22458999999999999999996 999999999999999999999
Q ss_pred HHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-------------C------CeEEEEc----
Q 012774 111 LYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-------------K------HRTILID---- 167 (456)
Q Consensus 111 ~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-------------~------~~~~~~~---- 167 (456)
+++||.++|++.+++....++.++...+++.+++++++.+......+.. . ...+.+.
T Consensus 137 a~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 216 (626)
T KOG1175|consen 137 AMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRNR 216 (626)
T ss_pred HHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecccc
Confidence 9999999999999999999999999999999999999976544322110 0 0011110
Q ss_pred CCchhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHh
Q 012774 168 SPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIY 247 (456)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 247 (456)
+..++..+..... .........+++.+|+|||||||.||++.+++....-.............++|+.++.....|+.
T Consensus 217 d~~~~~~~~~a~~--~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~ 294 (626)
T KOG1175|consen 217 DLFWSLELKKASP--EHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWIT 294 (626)
T ss_pred cccHHHHhhhcCC--CCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeee
Confidence 1123333332221 22245567789999999999999999999999876555544444443789999999999999999
Q ss_pred hHH-HHHHHhHhcceEEEec--CCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCC--CCCCCCceEEEecCCCCCHH
Q 012774 248 GLF-FCFRAAALMETAVVMQ--RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD--GYDLSSLETVACGAAPLGKD 322 (456)
Q Consensus 248 g~~-~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--~~~l~~lr~v~~gG~~~~~~ 322 (456)
+.. ..+++++.|+++++.+ .+++..+++.+.++++|+++..|+.++.|.+..... .+++++||.+.++||++.++
T Consensus 295 g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi~~~ 374 (626)
T KOG1175|consen 295 GHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPINPE 374 (626)
T ss_pred ccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCccCCcc
Confidence 884 4667999999999986 459999999999999999999999999887765433 34457899999999999999
Q ss_pred HHHHHHHhCCCC-ceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCC-CcceEEEecC---
Q 012774 323 TIMAFASKFPKV-VLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPG-KEGELSIRGP--- 397 (456)
Q Consensus 323 ~~~~~~~~~~~~-~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g-~~Gel~i~g~--- 397 (456)
.++++.+.+ +. +|.+.||+||+|+.++.+.......++++.+.|.+++.+.|+| ++|+.++.+ +.|+|+++.+
T Consensus 375 ~~ew~~~~~-~~~pv~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d-e~g~~~~~~~~~G~l~~~~~~P~ 452 (626)
T KOG1175|consen 375 AWEWWKRVT-GLDPIYETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILD-ENGNELPPSTGNGELRLKPPWPP 452 (626)
T ss_pred hHHHHHHhc-CccchhhceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEEC-CCCCCcCCCCceeEEEEeCCCCc
Confidence 999999998 55 7999999999999887654333256889999999999999999 588888876 8899999984
Q ss_pred CcccccCCCccccccccCC--CCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 398 TIMKGYVGEPEVTSATLLP--DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 398 ~~~~gy~~~~~~~~~~~~~--~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+.+++|++|++........ .|+|.|||.|++|+||+++++||.||+|+++|+|++++||
T Consensus 453 ~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEI 513 (626)
T KOG1175|consen 453 GMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEI 513 (626)
T ss_pred cccccccCCHHHhhhhhcccCCceEEecCceEEcCCceEEEEecccccccccceeecHHHH
Confidence 5689999999844444334 6899999999999999999999999999999999999986
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=387.14 Aligned_cols=327 Identities=18% Similarity=0.188 Sum_probs=281.9
Q ss_pred EEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhh
Q 012774 61 LINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQL 140 (456)
Q Consensus 61 ~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~ 140 (456)
+++. ++++||+||.++++++|+.|. .|+++|++|+++++|+++++++++|++++|++++|+++..+.+.+..+++.
T Consensus 2 ~~~~--~~~~ty~el~~~~~~~a~~l~--~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~ 77 (414)
T PRK08308 2 LIVN--DEEYSKSDFDLRLQRYEEMEQ--FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKR 77 (414)
T ss_pred eEec--CceecHHHHHHHHHHHHHHHH--cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHh
Confidence 5566 789999999999999999985 489999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEccchHHHHhccCCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHH
Q 012774 141 SNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAA 220 (456)
Q Consensus 141 ~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~ 220 (456)
++++++++++.... .. . .....++++++++|||||||.||+|.++|+++..+
T Consensus 78 ~~~~~~i~~~~~~~-----------~~---------~--------~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~ 129 (414)
T PRK08308 78 AGCHGLLYGESDFT-----------KL---------E--------AVNYLAEEPSLLQYSSGTTGEPKLIRRSWTEIDRE 129 (414)
T ss_pred CCCCEEEecCcccc-----------cc---------c--------CCCCCCCCceEEEECCCCCCCCcEEEEehHhHHHH
Confidence 99999998763100 00 0 01234578999999999999999999999999988
Q ss_pred HHHhccCCCCCCCCcEEEEecchhhHhhH-HHHHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCC
Q 012774 221 VASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG 299 (456)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 299 (456)
+......+ ....+++++..+|++|.+++ ..++.++..|+++++.+.+++..+++.++++++|.++++|+++..+.+..
T Consensus 130 ~~~~~~~~-~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~ 208 (414)
T PRK08308 130 IEAYNEAL-NCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQHILYAVPLMLHILGRLL 208 (414)
T ss_pred HHHHHHhh-CCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCCeEEEcCHHHHHHHHhcC
Confidence 87776666 56788999999999999998 56788999999999999899999999999999999999999999998764
Q ss_pred CCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCC
Q 012774 300 STDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPE 379 (456)
Q Consensus 300 ~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~ 379 (456)
.. ..+++.+++||+++++++.+++++. ..++++.||+||++++.... .....+++|+|+|++++++.+ +
T Consensus 209 ~~----~~~l~~~~~~G~~l~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~----~~~~~~~~G~p~~~~~~~~~~-~ 277 (414)
T PRK08308 209 PG----TFQFHAVMTSGTPLPEAWFYKLRER--TTYMMQQYGCSEAGCVSICP----DMKSHLDLGNPLPHVSVSAGS-D 277 (414)
T ss_pred Cc----cccccEEEEccCCCCHHHHHHHHHh--CChhhhccCccccCCeeecC----CCCCCCccCccCCCeEEEEec-C
Confidence 32 1368899999999999999999987 57899999999998654321 123457899999999999976 2
Q ss_pred CCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 380 TGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 380 ~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
.++.|||++++ .++||+|||+|++|+||+++++||.||+||++|++|+|.|+
T Consensus 278 ------~~~~gel~v~~-------------------~~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eI 329 (414)
T PRK08308 278 ------ENAPEEIVVKM-------------------GDKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEV 329 (414)
T ss_pred ------CCCCceEEEEc-------------------CCceEECCceEEECCCccEEEecccCCeEEECCEEECHHHH
Confidence 25569999974 25799999999999999999999999999999999999874
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-44 Score=366.81 Aligned_cols=402 Identities=22% Similarity=0.269 Sum_probs=335.6
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.++++++.+.+... |++.|+++. +..+||+||.++++++|+.|.+ .|+.++++|+++.+.++++++.++|+++
T Consensus 227 ~~i~~~f~~~a~~~----p~~~a~~~~--~~~lty~el~~~a~~la~~l~~-~g~~~~~~V~i~~~rs~~~i~~~l~ilk 299 (642)
T COG1020 227 LTIHLLFEEQAATT----PDAVALVRG--GQQLTYAELDARANRLARLLIS-LGVGPGETVAILADRSLELVVALLAVLK 299 (642)
T ss_pred chHHHHHHHHHHhC----CCceeEecC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEcCCCHHHHHHHHHHHh
Confidence 68999999999999 999999987 7899999999999999999999 8999999999999889999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccCCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEEE
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 197 (456)
+|..++|+++.++.+++.+++++..+.++++............. +.++..... .. ..........+++.+|+
T Consensus 300 aG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~---~~~~~~~~~~~~~~ayi 371 (642)
T COG1020 300 AGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGLPG--LALDDALSE---IP---DTDPIPQALLGDALAYI 371 (642)
T ss_pred cCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccccCCc--ccccccccc---CC---ccCcccccCCCCCeEEE
Confidence 99999999999999999999999999999998443322111111 111111110 00 00111223455899999
Q ss_pred EcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecC---CCHHHHH
Q 012774 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKMML 274 (456)
Q Consensus 198 ~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~---~~~~~~~ 274 (456)
+|||||||.||||.++|+++.+........+ .....|+++...++.+..+...++.++..|+.+++.+. .++..+.
T Consensus 372 iytsgstg~Pkgv~~~h~~~~~~~~~~~~~~-~~~~~d~~l~~~s~~fD~~~~~~f~~l~~G~~l~~~~~~~~~~~~~l~ 450 (642)
T COG1020 372 IYTSGSTGQPKGVRIEHRALANLLNDAGARF-GLDADDRVLALASLSFDASVFEIFGALLEGARLVLAPALLQVDPAALL 450 (642)
T ss_pred EEccCCCCCCCCceecCHHHHHHHHHHHHhc-CCCcccEEeecCCcccchhHHHHHHHHhCCCEEEecCccccCCHHHHH
Confidence 9999999999999999999998777666666 67888899999998777778899999999999999863 6899999
Q ss_pred HHHHHhcceeEEecHHHHHHHhcCCCCCC--CCCCCceEEEecCCCCCHHHHHHHHHhCC-CCceEeccCcccccccccc
Q 012774 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDG--YDLSSLETVACGAAPLGKDTIMAFASKFP-KVVLVQAYGLTESTAGVFR 351 (456)
Q Consensus 275 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~l~~lr~v~~gG~~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~ 351 (456)
+.+.++++|++..+|..+..++....... .....+|.+++||+.++.++...+....+ ...+.+.||+||+...+..
T Consensus 451 ~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~ 530 (642)
T COG1020 451 ELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPS 530 (642)
T ss_pred HHHHHcCCEEEEecHHHHHHHHhchhhccccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheee
Confidence 99999999999999999999988622221 22345999999999999999999988764 5789999999996665554
Q ss_pred ccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccC
Q 012774 352 TVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDED 431 (456)
Q Consensus 352 ~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~d 431 (456)
...........++|+|+++..++|+| ..++.++.|..||+++.|.++++||+++++.+.+.|..+.+|+|||++++..|
T Consensus 531 ~~~~~~~~~~~piG~p~~n~~~~ild-~~~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~d 609 (642)
T COG1020 531 FPISAELESRVPIGRPVANTQLYILD-QGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLAD 609 (642)
T ss_pred EEcccccCCCCCcceeeCCCeEEEEC-CCCCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECCC
Confidence 33222221246899999999999999 88999999999999999999999999999999999975558999999999999
Q ss_pred CcEEEecccccceeeCCeeecCCCC
Q 012774 432 GFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 432 g~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|.+.++||.|+++|++|++|.+.||
T Consensus 610 g~~e~lgr~D~qvki~g~Riel~ei 634 (642)
T COG1020 610 GALEYLGRKDSQVKIRGFRIELGEI 634 (642)
T ss_pred CeEEEeccccceeEeceEecCcHHH
Confidence 9999999999999999999977654
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=366.64 Aligned_cols=375 Identities=14% Similarity=0.101 Sum_probs=283.7
Q ss_pred CCCHHHHhhhcccCCCCCCCCCcEEEEC---CCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHH
Q 012774 37 PISAVDYVSSLRATLPWRDDDTVALINS---VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113 (456)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~A~~~~---~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~l 113 (456)
..|+.+++.+.++++ |+++|+... ...+++||+|+.++++++|++|.+ +|+++||+|+|+++|+++|+++.+
T Consensus 426 ~~Tl~dll~~~a~~~----pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~-lGV~~GDrVaIls~N~~Ewvia~l 500 (1452)
T PTZ00297 426 VRSLGEMWERSVTRH----STFRCLGQTSESGESEWLTYGTVDARARELGSGLLA-LGVRPGDVIGVDCEASRNIVILEV 500 (1452)
T ss_pred CCCHHHHHHHHHHHC----CCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHH
Confidence 369999999999999 999999632 223689999999999999999999 999999999999999999999999
Q ss_pred HHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc---CC-eEEEEcCC-----------------chh
Q 012774 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL---KH-RTILIDSP-----------------EFD 172 (456)
Q Consensus 114 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---~~-~~~~~~~~-----------------~~~ 172 (456)
||+++|++.+|+.+ +.+++.+++++++++++|++.+....+.+. .+ .+++++.. .|+
T Consensus 501 A~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~ 578 (1452)
T PTZ00297 501 ACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRSRKLETVVYTHSFYDEDDHAVARDLNITLIPYE 578 (1452)
T ss_pred HHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcccCCcEEEEECCCcccccccccccCCcceeeHH
Confidence 99999999999975 467899999999999999998777666432 22 34444321 144
Q ss_pred hhhcccCCCccccccCCCCCCEEEEEc---CCCCCCCCchhcccHHHHHHHHHHhccCC--CCCCCCcEEEEecchhhHh
Q 012774 173 SMTMSWNSKHELDRAKVCQSDVAAIMY---SSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPYFHIY 247 (456)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~a~i~~---TSGtTG~PK~V~~th~~l~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~ 247 (456)
++...+............+++++.++| ||||||.||||++||+|++.++....... +...++|++++.+|++|++
T Consensus 579 ~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~ 658 (1452)
T PTZ00297 579 FVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLF 658 (1452)
T ss_pred HHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHHH
Confidence 444332211111122346788998885 99999999999999999999888765422 1345789999999999999
Q ss_pred hHHHHHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCC-------------------------
Q 012774 248 GLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD------------------------- 302 (456)
Q Consensus 248 g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------- 302 (456)
+....+.++..|+++.. +++..+++.|++++||+++++|.+++.+.......
T Consensus 659 er~~~~~~l~~G~~I~~---~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~~~~ 735 (1452)
T PTZ00297 659 NRVFVLGLFAHGSAVAT---VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINI 735 (1452)
T ss_pred HHHHHHHHHHcCCEEEe---CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 98777788899998864 47899999999999999999999998775432100
Q ss_pred -CCCC----------------CCceEEEecCC--CCCHHHHHHHHHhCCCCceEeccCccccccccccccCCCCCCCCCc
Q 012774 303 -GYDL----------------SSLETVACGAA--PLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGS 363 (456)
Q Consensus 303 -~~~l----------------~~lr~v~~gG~--~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~ 363 (456)
.... .++|.+++||+ +++ ..... ++++...||+||... .. ... .. ..
T Consensus 736 g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~-----~~l~~--~i~i~~g~glTE~~~---~~-~~~-~~--~~ 801 (1452)
T PTZ00297 736 HRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTS-----FSLLE--HISVCYVPCLREVFF---LP-SEG-VF--CV 801 (1452)
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccC-----hHHhC--CceEEEecceEEeee---ec-CCC-Cc--cc
Confidence 0000 46899999873 444 33333 577888999999532 11 111 11 23
Q ss_pred cccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccc
Q 012774 364 TGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDL 443 (456)
Q Consensus 364 ~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ 443 (456)
.|.|+|+++++|.+.++... .+..|||+++ |+++|+.|.+.+ +||+ +||+|.|+||+||+
T Consensus 802 ~G~PlpgvEvKI~~~~E~~~--~~~~GEIlvr-------~~kdpe~T~e~~--~gW~---------~dG~L~IidRkKdl 861 (1452)
T PTZ00297 802 DGTPAPSLQVDLEPFDEPSD--GAGIGQLVLA-------KKGEPRRTLPIA--AQWK---------RDRTLRLLGPPLGI 861 (1452)
T ss_pred CCeecCceEEEEcccccccC--CCCCCeEEEE-------ECCChHHHHHhh--CcCc---------cCCeEEEEeccccc
Confidence 39999999999997322211 1346999995 357888888743 5664 69999999999999
Q ss_pred eeeC-CeeecCCC
Q 012774 444 IKYK-GYQVLPLL 455 (456)
Q Consensus 444 ik~~-G~~v~p~e 455 (456)
||.. |++|.|..
T Consensus 862 ikls~GEyVaP~~ 874 (1452)
T PTZ00297 862 LLPVAYEYVIAAE 874 (1452)
T ss_pred eECCCCcEEcHHH
Confidence 9985 99999964
|
|
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=291.72 Aligned_cols=236 Identities=29% Similarity=0.465 Sum_probs=200.3
Q ss_pred CCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEe--
Q 012774 188 KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVM-- 265 (456)
Q Consensus 188 ~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~-- 265 (456)
...++++++++|||||||.||+|+++|+++..........+ ...++++..+|++|..++..++.++..|++.++.
T Consensus 31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~ 107 (358)
T PRK07824 31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL---GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDV 107 (358)
T ss_pred CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc---CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCc
Confidence 34568999999999999999999999999988877665544 3457889999999999998888899999998873
Q ss_pred -cCCCHHHHHHHHHHhc--ceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCc
Q 012774 266 -QRFDLKMMLKAVEEFR--VTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342 (456)
Q Consensus 266 -~~~~~~~~~~~i~~~~--~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~ 342 (456)
..+++..+++.+++++ .++...+|..+..++.... ...+++++|.+++||+++++++.+.+.+. ++++++.||+
T Consensus 108 ~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~-~~~~~~~l~~i~~gG~~l~~~~~~~~~~~--~~~v~~~YG~ 184 (358)
T PRK07824 108 SAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA-ATAALAELDAVLVGGGPAPAPVLDAAAAA--GINVVRTYGM 184 (358)
T ss_pred CCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc-ccCCcccceEEEECCCCCCHHHHHHHHhc--CCcEEecccC
Confidence 4578999999999998 5666778888877766543 23457899999999999999999998864 8999999999
Q ss_pred cccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeec
Q 012774 343 TESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRT 422 (456)
Q Consensus 343 tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~T 422 (456)
||++..+ ...|.|++++++++.+ |||+++|+.++.||+++++.+ .+..+|||+|
T Consensus 185 TE~~~~~------------~~~G~~~~g~~v~i~~------------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~T 238 (358)
T PRK07824 185 SETSGGC------------VYDGVPLDGVRVRVED------------GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRT 238 (358)
T ss_pred CccCCCc------------CcCceeCCCCEEEecC------------CEEEEecCccccccCCCcccc--cccCCCceec
Confidence 9986532 2358999999999954 999999999999999988753 3546789999
Q ss_pred cceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 423 GDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 423 GDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
||+|++ ++|++++.||.||+||++|++|+|.|+
T Consensus 239 GDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eI 271 (358)
T PRK07824 239 DDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVV 271 (358)
T ss_pred ccEEEE-eCCEEEEEeccCCeEEECCEEECHHHH
Confidence 999999 899999999999999999999999874
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=266.06 Aligned_cols=247 Identities=23% Similarity=0.268 Sum_probs=189.5
Q ss_pred CCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHh---ccCCCCCCCCcEEEEecchhhHh-hHHHHHHHhHhcceEEEe
Q 012774 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS---FASSPKRVSPAVMLFTMPYFHIY-GLFFCFRAAALMETAVVM 265 (456)
Q Consensus 190 ~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~~-g~~~~~~~l~~G~~~~~~ 265 (456)
..++++++++||||||.||+|.++|.++..+.... .... +...+|++++..+..+.. ++...+.+...|++++..
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~-g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 151 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAA-GGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPI 151 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHc-CCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEec
Confidence 44678889999999999999999999986553322 2223 567788888766543322 233345677789998888
Q ss_pred cCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCC--CCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCcc
Q 012774 266 QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD--LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLT 343 (456)
Q Consensus 266 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~--l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~t 343 (456)
+..+++.+++.|+++++|+++++|+.+..|++.....+.+ ..++|.+++|||++++++.+.+.+.| ++++++.||+|
T Consensus 152 ~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~-g~~v~~~YG~t 230 (422)
T TIGR02155 152 SGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARL-GMKATDIYGLS 230 (422)
T ss_pred CCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHh-CCceEecccch
Confidence 7778899999999999999999999999988754333222 35899999999999999999999999 79999999999
Q ss_pred ccccccccccCCCCCCCCCcccccc--CCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeee
Q 012774 344 ESTAGVFRTVGPDECRRWGSTGRLS--AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMR 421 (456)
Q Consensus 344 E~~~~~~~~~~~~~~~~~~~~G~~~--~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~ 421 (456)
|+++......... ...|.++ +++.++|+|+++++++++|+.|||++++. +...+ +.+||+
T Consensus 231 E~~~~~~~~~~~~-----~~~g~~~~~~~~~~eivd~~~g~~v~~Ge~Gelvvt~~------------~~~~~-p~~ry~ 292 (422)
T TIGR02155 231 EVIGPGVAMECVE-----TQDGLHIWEDHFYPEIIDPHTGEVLPDGEEGELVFTTL------------TKEAL-PVIRYR 292 (422)
T ss_pred hhcCCceeecccc-----cCCCceEecCeeEEEEECCCCCCCCCCCCeeEEEEecC------------Ccccc-ceeeEE
Confidence 9853211111111 0112233 45778899988899999999999999873 22334 568999
Q ss_pred ccceEEEccC-C-----cEEEecccccceeeCCeeecCCCC
Q 012774 422 TGDLCYIDED-G-----FLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 422 TGDl~~~~~d-g-----~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|||+++++++ | .+++.||.||+||++|.+|+|.|+
T Consensus 293 TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~ei 333 (422)
T TIGR02155 293 TRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQL 333 (422)
T ss_pred cCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHH
Confidence 9999999876 4 578999999999999999999764
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-31 Score=251.65 Aligned_cols=216 Identities=20% Similarity=0.184 Sum_probs=171.4
Q ss_pred CCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCC--CCCcEEEEecchhhHhhH-HHHHHHhHhcceEEEecCC
Q 012774 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKR--VSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRF 268 (456)
Q Consensus 192 ~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~ 268 (456)
+..++++|||||||.||+|+++|+++..........+ +. ...+++++.+|++|.+++ ..++.++..|+++++.+.+
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~ 173 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKIL-GERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAA 173 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHh-CcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCC
Confidence 5578999999999999999999999988777665554 33 334689999999999887 5677888999999999888
Q ss_pred CHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccc
Q 012774 269 DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG 348 (456)
Q Consensus 269 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~ 348 (456)
++..+++.++.. |+++++|+++..+.+.. ..++++|. ++||+++++++++.+++. +...+++.||+||++++
T Consensus 174 ~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i 245 (386)
T TIGR02372 174 PASGIMRHARPG--DLIVGTPFIWEQLADLD----YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGI 245 (386)
T ss_pred ChHHHHHhhccC--CEEEECcHHHHHHHhhC----cCCCccee-EecCCCCCHHHHHHHHHh-cccchhheecccccccc
Confidence 998888888743 89999999999997642 34677876 678999999999999886 23579999999999875
Q ss_pred cccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEE
Q 012774 349 VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYI 428 (456)
Q Consensus 349 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~ 428 (456)
.+.. ..+..|+++|++++.+ + ++. + .|+ ..|++|||+|++
T Consensus 246 ~~~~-------~~~~~~~~~p~~~~~~-~--~~~--------~---~g~-------------------~~~~~tgD~g~~ 285 (386)
T TIGR02372 246 GLRE-------APDDPFRLLPDLACFA-D--TLS--------S---AGL-------------------ARRLDLQDRLAW 285 (386)
T ss_pred cccc-------CCCCCcccCCCccccC-C--Ccc--------C---CCc-------------------cceeecCceEEE
Confidence 4431 1234567888776543 1 111 0 011 236899999999
Q ss_pred ccCCcEEEecccccceeeCCeeecCCCC
Q 012774 429 DEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 429 ~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|++|+++|.||+||+||++|++|+|.|+
T Consensus 286 d~~G~l~i~GR~dd~Ik~~G~~V~p~eI 313 (386)
T TIGR02372 286 DKDGGFTILGRKDEILQVGGVNVSPGHV 313 (386)
T ss_pred cCCCcEEEecccCCEEEECCEEEcHHHH
Confidence 9999999999999999999999999874
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=229.47 Aligned_cols=413 Identities=17% Similarity=0.254 Sum_probs=294.0
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECC----CCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSV----TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~----~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~l 113 (456)
.++.|+|..+++.+ |+++|+...+ +..++||+++..+|.+++..|..+..+++||.|+|+++++.|++++++
T Consensus 770 ~~ile~Lq~R~a~t----p~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~ 845 (1363)
T KOG3628|consen 770 LTILEILQWRAAKT----PDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIY 845 (1363)
T ss_pred HHHHHHHHHHhhcC----CCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHH
Confidence 57899999999999 9999997642 347899999999999999999997789999999999999999999999
Q ss_pred HHHHhCCeEecCCCCC------CHHHHHHHhhhcCCeEEEEccchHHHHhccC---------Ce-EEEEcCCchhhhhcc
Q 012774 114 SLLSLGVIISPANPVN------TESEISRQIQLSNPVIAFATSSVVHKLAKLK---------HR-TILIDSPEFDSMTMS 177 (456)
Q Consensus 114 a~~~~G~~~v~l~~~~------~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~~~ 177 (456)
||+++|++++|+.|.- +...+..+++..++..|+++......+++.. .. +++.++.. +.....
T Consensus 846 ~Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~-~t~~k~ 924 (1363)
T KOG3628|consen 846 ACLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLP-ETIRKR 924 (1363)
T ss_pred HHHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccc-hhhhhh
Confidence 9999999999998754 3467889999999999999988776665211 11 11111110 001010
Q ss_pred cCC----CccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhH-HHH
Q 012774 178 WNS----KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFC 252 (456)
Q Consensus 178 ~~~----~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~ 252 (456)
..+ ..........++.+|++-+.--++|.--++.++|..+++.+....+.. .+.+..-++...+.+...|+ .++
T Consensus 925 ~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~-~l~~~rpl~~~~~~~sGlgf~~wc 1003 (1363)
T KOG3628|consen 925 KKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETC-QLYKSRPLLGCSSPYSGLGFNHWC 1003 (1363)
T ss_pred hhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHH-ccccCCceEEEecCccchhHHHHH
Confidence 000 001112234557899999988899999999999999999999888887 45555555555555555566 888
Q ss_pred HHHhHhcceEEEecC----CCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCc------eEEEecCCCCCHH
Q 012774 253 FRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSL------ETVACGAAPLGKD 322 (456)
Q Consensus 253 ~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~l------r~v~~gG~~~~~~ 322 (456)
+...+.|.+.++++. .++..++..|+++++.-++.+-..++.+......+..+++.. -.++..-+.....
T Consensus 1004 LlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~s~s~vv~~~~RPr~a 1083 (1363)
T KOG3628|consen 1004 LLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNTSSSIVVPAEERPRIA 1083 (1363)
T ss_pred HHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhcccccceeeecCCccHHH
Confidence 999999999888763 488999999999999999998888888877655443333221 2333344555556
Q ss_pred HHHHHHHhCCCCc-----eEeccCcccccccccccc-CCC-------------------CCCC-----CCccccccCCcE
Q 012774 323 TIMAFASKFPKVV-----LVQAYGLTESTAGVFRTV-GPD-------------------ECRR-----WGSTGRLSAGLE 372 (456)
Q Consensus 323 ~~~~~~~~~~~~~-----i~~~yG~tE~~~~~~~~~-~~~-------------------~~~~-----~~~~G~~~~~~~ 372 (456)
+...+.+.|...- +.-.|+.-=-..++...+ ..+ +... ....|...++++
T Consensus 1084 li~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~ 1163 (1363)
T KOG3628|consen 1084 LIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTD 1163 (1363)
T ss_pred HHHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccce
Confidence 6777777662111 222333322111111100 000 0000 112488889999
Q ss_pred EEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccc-cccccC---------CCCeeeccceEEEcc------C----C
Q 012774 373 AKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEV-TSATLL---------PDGWMRTGDLCYIDE------D----G 432 (456)
Q Consensus 373 ~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~-~~~~~~---------~~g~~~TGDl~~~~~------d----g 432 (456)
+.|++|++-.++..|+.||||+.|.+-+.+|+...+. ....|. ...|-||||+|+.+. + .
T Consensus 1164 i~IvnPEtk~pc~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~ 1243 (1363)
T KOG3628|consen 1164 IAIVNPETKGPCRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHD 1243 (1363)
T ss_pred eEEeCCccccccccCCcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeee
Confidence 9999999999999999999999999998888754221 111111 235999999999842 2 3
Q ss_pred cEEEecccccceeeCCeeecCCCC
Q 012774 433 FLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 433 ~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
-+|++|-.++.+.++|.+.+|..|
T Consensus 1244 ~LyVlG~i~EtlEl~GL~h~p~DI 1267 (1363)
T KOG3628|consen 1244 LLYVLGAIDETLELNGLRHFPSDI 1267 (1363)
T ss_pred eEEEeecccceeeecCcccCcchH
Confidence 599999999999999999999754
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-27 Score=229.46 Aligned_cols=248 Identities=16% Similarity=0.132 Sum_probs=180.5
Q ss_pred CCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCC--CCCCCCcEEEEecchhhHhhH-HHHHHHhHhcceEEEec
Q 012774 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQ 266 (456)
Q Consensus 190 ~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~~~~~ 266 (456)
..++++.+++||||||.||+|.+||+++..........+ .+..++|+++...+..+..+. ...+.+...|++++...
T Consensus 84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~ 163 (445)
T TIGR03335 84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEG 163 (445)
T ss_pred CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCC
Confidence 456788999999999999999999999876554332221 156788999988887765554 33455677888765443
Q ss_pred CCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCC--CCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccc
Q 012774 267 RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY--DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE 344 (456)
Q Consensus 267 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE 344 (456)
. ....++.|+++++|++.++|+.+..|++....... ...++|.+++|||++++++.+.+.+.| ++++++.||+||
T Consensus 164 ~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~-g~~v~~~YG~TE 240 (445)
T TIGR03335 164 K--CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELW-GCEVYNTYGSTE 240 (445)
T ss_pred c--hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEecCChhh
Confidence 3 34668999999999999999998887764333222 246899999999999999999999988 899999999999
Q ss_pred cccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccc
Q 012774 345 STAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGD 424 (456)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGD 424 (456)
++. +..+. . ......+-+.+.++|+|++++.++++|+.|||++++-.... ..... +--.|+|||
T Consensus 241 ~~~-~~~c~--~----~~g~h~~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~L~~~~------~r~~~---PliRYrtgD 304 (445)
T TIGR03335 241 GTM-CGECQ--A----VAGLHVPEDLVHLDVYDPRHQRFLPDGECGRIVLTTLLKPG------ERCGS---LLINYDTED 304 (445)
T ss_pred hhh-eEEec--C----CCCccccCCceEEEEEcCCCCCCCcCCCceEEEEEecCCCC------ccCCc---eEEEeecCc
Confidence 862 22211 1 11122334567899999888889999999999998743100 00001 112599999
Q ss_pred eEEEcc-C----C----cEEEecccccceeeCCeeecCCCC
Q 012774 425 LCYIDE-D----G----FLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 425 l~~~~~-d----g----~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
++++.. + | .+...||.||+++++|.+|+|+++
T Consensus 305 ~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~i 345 (445)
T TIGR03335 305 TTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDV 345 (445)
T ss_pred eEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHH
Confidence 999732 2 3 244579999999999999999753
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.6e-26 Score=200.00 Aligned_cols=205 Identities=13% Similarity=0.054 Sum_probs=157.3
Q ss_pred hhhcccCCCCCCCCCcEEEEC-C---CCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhC
Q 012774 44 VSSLRATLPWRDDDTVALINS-V---TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG 119 (456)
Q Consensus 44 l~~~~~~~~~~~p~~~A~~~~-~---~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~~G 119 (456)
|+..++++ |+++|++.. + +++++||+||.++++++|+.|.++.|+++||+|+|+++|+++++++++|++++|
T Consensus 2 ~~~~~~~~----p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G 77 (227)
T TIGR03089 2 LSPLLAAD----PASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTG 77 (227)
T ss_pred hhhhhhhC----CCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 45566777 999999743 2 234799999999999999999862599999999999999999999999999999
Q ss_pred CeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccCCeEEEEc-----C----------CchhhhhcccCCCccc
Q 012774 120 VIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILID-----S----------PEFDSMTMSWNSKHEL 184 (456)
Q Consensus 120 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-----~----------~~~~~~~~~~~~~~~~ 184 (456)
++++|++ .+++++++++++....+... ..++.+. . .++........ ...
T Consensus 78 ~v~vp~n-------------~s~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 141 (227)
T TIGR03089 78 VEVVLAG-------------DPDADVVVTGPDRLAAAAGS-GEVVALSLDPLGRRVAGELPPGVIDFAPEVRVHG--DQF 141 (227)
T ss_pred CEEEeCC-------------CCCCCEEEeCcchhhhcccC-CceEEEeccccccCCCCCCCCcccchhhhhhccC--CCC
Confidence 9999995 67899999998877765422 2222221 0 01222111110 011
Q ss_pred ccc-CCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhH-HHHHHHhHhcceE
Q 012774 185 DRA-KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETA 262 (456)
Q Consensus 185 ~~~-~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~ 262 (456)
... ...++|++.++||||+ +|+++..+. ... ++.++|+++ .+|++|++|+ ..++.++..|+++
T Consensus 142 ~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~-~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~ 206 (227)
T TIGR03089 142 APYEPPDATAPALVAGGGEW---------TGAELVAAA----RAA-GLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSL 206 (227)
T ss_pred CCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhc-CCCCCCeEE-ecCCCchHHHHHHHHHHhccCceE
Confidence 111 3456899999999985 666665544 222 578899999 9999999999 6788999999999
Q ss_pred EEecCCCHHHHHHHHHHhcce
Q 012774 263 VVMQRFDLKMMLKAVEEFRVT 283 (456)
Q Consensus 263 ~~~~~~~~~~~~~~i~~~~~t 283 (456)
++.++|+++.+++.|+++++|
T Consensus 207 v~~~rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 207 VLVTHPDPARLDQIAETERVT 227 (227)
T ss_pred EEecCCCHHHHHHHHHhhcCC
Confidence 999999999999999999987
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7e-24 Score=197.51 Aligned_cols=249 Identities=26% Similarity=0.319 Sum_probs=190.4
Q ss_pred CCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCC--CCCCCCcEEEEecch-hhHhhHHHHHHHhHhcceEEE
Q 012774 188 KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPY-FHIYGLFFCFRAAALMETAVV 264 (456)
Q Consensus 188 ~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~--~~~~~~~~~~~~~p~-~~~~g~~~~~~~l~~G~~~~~ 264 (456)
....++...+-.||||||+|+.+.++...+......+.+.+ .+...+|++....-. .+..|+..-.++-..|++++-
T Consensus 86 ~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip 165 (438)
T COG1541 86 AVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIP 165 (438)
T ss_pred cccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEc
Confidence 34456677799999999999999999998866555544444 256677777665442 223334444555567877777
Q ss_pred ecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCC--CCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCc
Q 012774 265 MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDG--YDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342 (456)
Q Consensus 265 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~ 342 (456)
...-+.+.-+++++++++|++.++|+++..|++.....+ ..-.++|.+++|+|++++++++.+.+.| |+..++.||+
T Consensus 166 ~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~-g~~~~diYGl 244 (438)
T COG1541 166 ISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRF-GCKAFDIYGL 244 (438)
T ss_pred cCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHh-CCceeecccc
Confidence 766678899999999999999999999999998876664 3346899999999999999999999999 9999999999
Q ss_pred cccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeec
Q 012774 343 TESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRT 422 (456)
Q Consensus 343 tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~T 422 (456)
||..+.... ++.........-+...++|+||++++.++.|+.|||+++.-. +..+ +--.|+|
T Consensus 245 tE~~g~g~~-----eC~~~~glhi~eD~~~~Ei~dP~t~e~l~dge~GelV~T~L~------------~~~~-PlIRYrt 306 (438)
T COG1541 245 TEGFGPGAG-----ECTERNGLHIWEDHFIFEIVDPETGEQLPDGERGELVITTLT------------KEGM-PLIRYRT 306 (438)
T ss_pred ccccCCccc-----ccccccCCCcchhhceeeeecCCcCccCCCCCeeEEEEEecc------------ccCc-ceEEEEc
Confidence 999766411 111112233445678999999999999999999999998632 1111 2236999
Q ss_pred cceEEEccC----Cc-----EEEecccccceeeCCeeecCCC
Q 012774 423 GDLCYIDED----GF-----LFIVDRLKDLIKYKGYQVLPLL 455 (456)
Q Consensus 423 GDl~~~~~d----g~-----l~~~GR~~d~ik~~G~~v~p~e 455 (456)
||+.++..+ |. -.+.||.||+++++|.+|+|..
T Consensus 307 gDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ 348 (438)
T COG1541 307 GDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQ 348 (438)
T ss_pred CCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHH
Confidence 999999763 32 4589999999999999999975
|
|
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=206.28 Aligned_cols=403 Identities=17% Similarity=0.101 Sum_probs=249.4
Q ss_pred CHHHHhhhcccCCCCCCCCCcEEEEC----C--CCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHH
Q 012774 39 SAVDYVSSLRATLPWRDDDTVALINS----V--TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILY 112 (456)
Q Consensus 39 ~~~~~l~~~~~~~~~~~p~~~A~~~~----~--~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~ 112 (456)
++..-+.+.+.+. |...+..+. . .-..+||++....++.+++.|.+ .|..+|+.|++++..+.++++..
T Consensus 37 ~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~-~~~~~~~~v~i~~~~~~d~~v~v 111 (1032)
T KOG1178|consen 37 TLEDSFRRELAEA----PENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVS-LGSLRGTTVAIYMLPSVDLVVSV 111 (1032)
T ss_pred chhhHHHHHHhhc----ccCCCceEeecccccccccchhhhhhhcccchhHHHhhh-cccccCceEEEeccCcCCeeeee
Confidence 4444566666777 776665432 1 12579999999999999999999 99999999999999999999999
Q ss_pred HHHHHhCCeEecCCCCCC----HHHHHH---HhhhcCCeEEEEccch-HHHHh-cc--CCeEEEEcCCchhhhhcccCCC
Q 012774 113 FSLLSLGVIISPANPVNT----ESEISR---QIQLSNPVIAFATSSV-VHKLA-KL--KHRTILIDSPEFDSMTMSWNSK 181 (456)
Q Consensus 113 la~~~~G~~~v~l~~~~~----~~~l~~---~l~~~~~~~vi~~~~~-~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~ 181 (456)
++++++|..+++++|.++ ++.+.. .+.... .-+..... .+... +. +..+... ...+..+... .
T Consensus 112 ~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~--~~i~~~l~i~~~~~~~~~~~~sv~~~-~~~f~~~~~~---~ 185 (1032)
T KOG1178|consen 112 FAVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVE--LEIVRRLNIIDILLNSLFPKLSVETI-ADSFQMVLHN---E 185 (1032)
T ss_pred eehhhcceEEEEecCCCcccccchHHHhhhhhheecc--ceehhhhhhHHHHhhccccccchhhc-cchhhhhhcc---C
Confidence 999999999999999999 332222 211111 11111111 11111 00 0011111 1112221111 1
Q ss_pred ccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecc-h-hhHhhHHHHHHHhHhc
Q 012774 182 HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMP-Y-FHIYGLFFCFRAAALM 259 (456)
Q Consensus 182 ~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p-~-~~~~g~~~~~~~l~~G 259 (456)
.........++..+.+.||||+||.||+|.-+|..+.+...+....+ .....+.+ ...+ . ++..-.-.....+..|
T Consensus 186 ~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f-~~t~s~~~-~~~~~~~~~d~i~~~~~~~L~~~ 263 (1032)
T KOG1178|consen 186 DTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTF-PPTGSDRF-TFKTSVYFDDTIQKFIGALLFNG 263 (1032)
T ss_pred CCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccC-CcCccchh-hhhheeecccchHHHHhhHhhcC
Confidence 12223345667789999999999999999999999999988888887 34445543 2222 2 2222223333445555
Q ss_pred ceEEEecCC---CHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCC-------------CCCCCCceEEEecCCCCCHHH
Q 012774 260 ETAVVMQRF---DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD-------------GYDLSSLETVACGAAPLGKDT 323 (456)
Q Consensus 260 ~~~~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------~~~l~~lr~v~~gG~~~~~~~ 323 (456)
+.+..+... ++..+.+.++++.++..+.+|+.+++++...... ....+.++.+..+|++...++
T Consensus 264 ~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~l 343 (1032)
T KOG1178|consen 264 NNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVLGGEPLLVSL 343 (1032)
T ss_pred ceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeeecCCccchhh
Confidence 555555332 3799999999999999999999988777654321 011247899999999999999
Q ss_pred HHHHHHhCCCCceEeccCccccccccccccCCCCC--CCCCccccccCC-------cEEEEEcCCCCCCCCCCCc----c
Q 012774 324 IMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDEC--RRWGSTGRLSAG-------LEAKIVDPETGDSLPPGKE----G 390 (456)
Q Consensus 324 ~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~--~~~~~~G~~~~~-------~~~~i~d~~~~~~~~~g~~----G 390 (456)
+..+.+.+.-.-...-|+.++..+........... .....+..+..+ ..+.+.. ..+.+.+.++. |
T Consensus 344 ~~s~~~~~~~~~~~~~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~l~ 422 (1032)
T KOG1178|consen 344 YTSTFDLLAEIFFGLPYLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSIIGSLTVLESLY-RAGGEGEGGVGKGCLG 422 (1032)
T ss_pred hhhhhhcccceeeeecccCCCCccceeHHhhCcccceecceeEEeccchhhccCCCcceeeee-ccCcccCCcccceeec
Confidence 99777776433444458888877665543211110 001111111111 1112222 22333332222 2
Q ss_pred eEEEecCCcccccCCCccccccccC-----CCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 391 ELSIRGPTIMKGYVGEPEVTSATLL-----PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 391 el~i~g~~~~~gy~~~~~~~~~~~~-----~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
.-+-.+.++..|| ..++.....+. .+.+|+|||+|+.-++|.+.+.||.|++||++|.|+...|+
T Consensus 423 ~~~~~~~~~~~g~-~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei 492 (1032)
T KOG1178|consen 423 AEQNLSSWVVDGY-STPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGEL 492 (1032)
T ss_pred ccccccceeeccc-cchhhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEEccEEEehhhh
Confidence 2222334444552 33333222211 13479999999998999999999999999999999987663
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.8e-16 Score=156.83 Aligned_cols=398 Identities=14% Similarity=0.187 Sum_probs=265.8
Q ss_pred HHHHhhhcccCCCCCCCCCcEEEECCC-C--ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCC--CcHHHHHHH
Q 012774 40 AVDYVSSLRATLPWRDDDTVALINSVT-G--LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNS--IEIPILYFS 114 (456)
Q Consensus 40 ~~~~l~~~~~~~~~~~p~~~A~~~~~~-~--~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~--~~~~~~~la 114 (456)
+...++.+-..+ +..+|.+.-+. | ..+||..+..++.++|+.-+.+-|++++|+|.++...+ .++++..++
T Consensus 96 ~~avl~~~~nhs----~~~ta~i~id~kgk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~g 171 (1363)
T KOG3628|consen 96 IIAVLRYRRNHS----ATSTAHICIDKKGKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFG 171 (1363)
T ss_pred hHHHHHhhccCC----CCCceEEEEcCCCceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhcc
Confidence 344444444444 66778766422 2 57999999999999999555558999999999988655 899999999
Q ss_pred HHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccCCeEEEEcCCchhhhhcccCCC--------ccccc
Q 012774 115 LLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSK--------HELDR 186 (456)
Q Consensus 115 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 186 (456)
|...|.+.+|+.+..+.+++..+++..+.++++........+.... ...++......|... .....
T Consensus 172 c~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~------~~~s~~k~v~~w~t~~~k~~~~~~k~~~ 245 (1363)
T KOG3628|consen 172 CFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDN------SPVSLAKAVAWWKTNDFKGNYTKDKIKK 245 (1363)
T ss_pred ccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhcc------CcccHHHHHHhhhcccccceeehhhccC
Confidence 9999999999999999999999999999999998765544443211 112222222222110 01111
Q ss_pred cCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCC-------------------CCCCCCcEEEEecchhhHh
Q 012774 187 AKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS-------------------PKRVSPAVMLFTMPYFHIY 247 (456)
Q Consensus 187 ~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~-------------------~~~~~~~~~~~~~p~~~~~ 247 (456)
+..... ..++-||.+++|.--+++.+|+ +..+.+...... ......+..+.........
T Consensus 246 P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~l 323 (1363)
T KOG3628|consen 246 PRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQL 323 (1363)
T ss_pred Cceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceeeccCccccc
Confidence 122223 7999999999999999999998 544333222111 1234455666666666666
Q ss_pred hH-HHHHHHhHhcceEEEecC---CCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCC-----------CCCCCCCceEE
Q 012774 248 GL-FFCFRAAALMETAVVMQR---FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST-----------DGYDLSSLETV 312 (456)
Q Consensus 248 g~-~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----------~~~~l~~lr~v 312 (456)
|+ ..++.+++.|.+.+.+++ +.+..+.+.+.+++++++..--..++........ ...+++++|.+
T Consensus 324 GlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~d~sslk~C 403 (1363)
T KOG3628|consen 324 GLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTPDLSSLKGC 403 (1363)
T ss_pred chhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchhhccCCCccceeee
Confidence 77 668899999999998886 6788999999999999998775555544433211 12467899999
Q ss_pred EecCCCCCHHHHHHHHHhC----CCC----c-------------eEeccCccccccccccccCC----------------
Q 012774 313 ACGAAPLGKDTIMAFASKF----PKV----V-------------LVQAYGLTESTAGVFRTVGP---------------- 355 (456)
Q Consensus 313 ~~gG~~~~~~~~~~~~~~~----~~~----~-------------i~~~yG~tE~~~~~~~~~~~---------------- 355 (456)
++.-..+..+..+-....+ ... . .+..-++.|.+.........
T Consensus 404 ~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L 483 (1363)
T KOG3628|consen 404 MVTCTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEAL 483 (1363)
T ss_pred EEeeeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeecccc
Confidence 9999998887664333322 111 1 11222334443332221110
Q ss_pred ---------CC---CCCCCccccccC-CcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCC------
Q 012774 356 ---------DE---CRRWGSTGRLSA-GLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP------ 416 (456)
Q Consensus 356 ---------~~---~~~~~~~G~~~~-~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~------ 416 (456)
+. ......+|...| +..+.++++++...|..+++|||||.+++...+|+.-+..|+..|..
T Consensus 484 ~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~ 563 (1363)
T KOG3628|consen 484 KLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESS 563 (1363)
T ss_pred ccceEEEcchhhhhhcCccccceecccceEEEEeCCCcccccccCcceeEEEecCCcccceeeccccccceEEeeecccc
Confidence 00 001123465555 45788999899999999999999999999999999777666655532
Q ss_pred ------CCeeeccceEEEccCCcEEEeccccccee-eCCee
Q 012774 417 ------DGWMRTGDLCYIDEDGFLFIVDRLKDLIK-YKGYQ 450 (456)
Q Consensus 417 ------~g~~~TGDl~~~~~dg~l~~~GR~~d~ik-~~G~~ 450 (456)
..+.|||=+|+++ +|.++|+|-++|++. +.|.+
T Consensus 564 ~~~~~n~~FmRtGLlGFv~-~gki~vl~~k~d~llq~~~~~ 603 (1363)
T KOG3628|consen 564 GKPPSNVPFMRTGLLGFVH-NGKIYVLGLKEDGLLQVSGWR 603 (1363)
T ss_pred CCCCccchhhhhcceeeee-CCeEEEEEechhhhhhhhhhh
Confidence 1379999999995 556677776666553 34443
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-14 Score=138.04 Aligned_cols=222 Identities=17% Similarity=0.119 Sum_probs=140.9
Q ss_pred EEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCC-C-CCCCCcEEEEe--cchhhHhhHHHHHHHhHhcce-EEEec-C
Q 012774 194 VAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS-P-KRVSPAVMLFT--MPYFHIYGLFFCFRAAALMET-AVVMQ-R 267 (456)
Q Consensus 194 ~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~-~-~~~~~~~~~~~--~p~~~~~g~~~~~~~l~~G~~-~~~~~-~ 267 (456)
...+..||||||.|-.+..+............... + +...++++... .+. +.+ ..+..... +...+ .
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~-~ly------~~~~~~~~~~~~~~l~ 173 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADN-NLY------QSVNNRWISLDFFDLL 173 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccCh-hHH------HHHHhccceeeecCCC
Confidence 34567799999999999999986654433322222 1 33333443332 221 111 11111111 11111 2
Q ss_pred CCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCcccccc
Q 012774 268 FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTA 347 (456)
Q Consensus 268 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~ 347 (456)
.+.+..++.|++++++++.++|+.+..|++.....+.+ .++|.++++||.++++..+.+.+.| ++++++.||+|| |.
T Consensus 174 ~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~f-g~~V~~~YG~tE-g~ 250 (430)
T TIGR02304 174 APFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVF-KNTVHQIYQATE-GF 250 (430)
T ss_pred cCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHh-CCCeeEccCCch-hh
Confidence 46889999999999999999999999999865444433 4789999999999999999999999 899999999999 55
Q ss_pred ccccccCCCCCCCCCccccccCCcEEE--EEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccce
Q 012774 348 GVFRTVGPDECRRWGSTGRLSAGLEAK--IVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDL 425 (456)
Q Consensus 348 ~~~~~~~~~~~~~~~~~G~~~~~~~~~--i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl 425 (456)
++..|. .+.+..--..+.++ ++|++ ++ ++.+|++-. + ..+ +=-.|+|||+
T Consensus 251 la~eC~-------~g~lHl~ed~~~vE~~ivD~~-~~-------~~~ViT~L~------n------~~~-PlIRYrtGD~ 302 (430)
T TIGR02304 251 LASTCR-------CGTLHLNEDLVHIEKQYLDEH-KR-------FVPIITDFT------R------TTQ-PIVRYRLNDI 302 (430)
T ss_pred eEEecC-------CCCEEEccccEEEEeeEECCC-Cc-------eEEEEecCC------C------ccc-eEEeeeCCCE
Confidence 443321 12232223344555 78843 32 344555421 1 111 1225999999
Q ss_pred EEEccC----Cc----E-EEecccccceee---CCeee--cC
Q 012774 426 CYIDED----GF----L-FIVDRLKDLIKY---KGYQV--LP 453 (456)
Q Consensus 426 ~~~~~d----g~----l-~~~GR~~d~ik~---~G~~v--~p 453 (456)
+....+ |. | .|.||.+|++++ +|..| +|
T Consensus 303 ~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p 344 (430)
T TIGR02304 303 LVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFP 344 (430)
T ss_pred EEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCH
Confidence 988543 32 3 388999999986 35444 66
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-10 Score=108.69 Aligned_cols=228 Identities=17% Similarity=0.194 Sum_probs=140.9
Q ss_pred CCCCEEEEEcCCCCCCCCchhcccHHHHHHHHH---HhccCCCCCCCCc-EEEEecchhh---HhhH--HHHHHHhHhcc
Q 012774 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVA---SSFASSPKRVSPA-VMLFTMPYFH---IYGL--FFCFRAAALME 260 (456)
Q Consensus 190 ~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~---~~~~~~~~~~~~~-~~~~~~p~~~---~~g~--~~~~~~l~~G~ 260 (456)
..+++..++.||||||.|--+.+.+..+..+.. .....+.+..... .++...|-.. ..+. ...+.....+.
T Consensus 87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~ 166 (365)
T PF04443_consen 87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS 166 (365)
T ss_pred ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence 345677889999999998767776665554432 2333221222222 2333333221 1111 22233334444
Q ss_pred eEEEec-CCCHHHHHHHHH----HhcceeEEecHHHHHHHhcCCCCCCC--CCC-CceEEEecC------CCCC-HHHHH
Q 012774 261 TAVVMQ-RFDLKMMLKAVE----EFRVTHAAVTPPIVVAMSKGGSTDGY--DLS-SLETVACGA------APLG-KDTIM 325 (456)
Q Consensus 261 ~~~~~~-~~~~~~~~~~i~----~~~~t~~~~~P~~~~~l~~~~~~~~~--~l~-~lr~v~~gG------~~~~-~~~~~ 325 (456)
...+-. .+|.+.+...+. +.++..+++.|.++..++...+.... .|+ ..+.+..|| +.++ +++.+
T Consensus 167 ~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~~ 246 (365)
T PF04443_consen 167 RFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEFYA 246 (365)
T ss_pred eeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHHHH
Confidence 433322 367777777664 45778889988887777665443333 343 456666666 5676 58888
Q ss_pred HHHHhCCCC----ceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCccc
Q 012774 326 AFASKFPKV----VLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMK 401 (456)
Q Consensus 326 ~~~~~~~~~----~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~ 401 (456)
.+.+.| |+ .+++.||+||...+.+.+. .-..++|-. +.|+|+++.++++.|+.|-|.+-.+...
T Consensus 247 ~l~~~~-Gv~~~~~i~~~ygmtEl~s~~~~~~---------~~~~~~p~w-V~iRDp~tl~~~~~Ge~Gli~vidl~~~- 314 (365)
T PF04443_consen 247 RLQEVF-GVIPIENIYDMYGMTELNSQAYECG---------HGHFHVPPW-VIIRDPETLEPLPPGETGLIQVIDLANT- 314 (365)
T ss_pred HHHHHH-CCCCHHHeeeeeeccccchhheeCC---------CCcccCCCe-EEEECCCCCcCCCCCCeeEEEEEccccc-
Confidence 888888 54 7999999999876554421 111123322 7788999999999999999998766421
Q ss_pred ccCCCccccccccCCCCeeeccceEEEccC--------CcEEEeccccc
Q 012774 402 GYVGEPEVTSATLLPDGWMRTGDLCYIDED--------GFLFIVDRLKD 442 (456)
Q Consensus 402 gy~~~~~~~~~~~~~~g~~~TGDl~~~~~d--------g~l~~~GR~~d 442 (456)
.| -+..-|.|+|.+..+ .++.++||.+.
T Consensus 315 s~-------------p~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~ 350 (365)
T PF04443_consen 315 SY-------------PGFILTEDLGVLHGDDDCGCRKGKYFEVLGRADG 350 (365)
T ss_pred CC-------------CcEEEEcceeeecCCCCCCCccCCEEEEEeCCCC
Confidence 11 233679999988654 27999999863
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=98.18 E-value=9.7e-06 Score=81.07 Aligned_cols=124 Identities=18% Similarity=0.168 Sum_probs=69.6
Q ss_pred CCCceEEEecCCCCCHHHHHHHHHhCCCCc-eEeccCccccccccccccCCCCCCCCCccccccCCc-EEEEEcCCC---
Q 012774 306 LSSLETVACGAAPLGKDTIMAFASKFPKVV-LVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGL-EAKIVDPET--- 380 (456)
Q Consensus 306 l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~-i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~d~~~--- 380 (456)
+++++.|.+.+..-...-.+.+++.+++.. +...|++||+- +.+. .. .. ...+.+.++. -.+.++.++
T Consensus 266 WP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~-i~i~-~~---~~--~~~~~l~~~~~ffEFip~~~~~~ 338 (528)
T PF03321_consen 266 WPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGF-IGIP-LD---PE--DPGYVLAPDSGFFEFIPVDEDEQ 338 (528)
T ss_dssp STT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEE-EEEE-S----CC--C--EEE-TTSSEEEEEE-STT--
T ss_pred CCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceE-EEEe-cC---CC--CCceEeecCCeEEEEEeccCCcc
Confidence 678997666555545566677788777755 44579999953 2221 11 11 1122333322 445555332
Q ss_pred -----C-----CCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEcc--CC--cEEEecccccceee
Q 012774 381 -----G-----DSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDE--DG--FLFIVDRLKDLIKY 446 (456)
Q Consensus 381 -----~-----~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~--dg--~l~~~GR~~d~ik~ 446 (456)
. ..+..|+.-||+|+..+ |.| .|+.||++++.. ++ .+.|.||.+.++.+
T Consensus 339 ~~~~~~~~l~~~ele~G~~YelviTt~~---GLy--------------RY~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l 401 (528)
T PF03321_consen 339 NPSEQPKTLLLHELEVGEEYELVITTNS---GLY--------------RYRIGDVVRVTGFYNQTPRIEFVGRRGQVLSL 401 (528)
T ss_dssp -----SSSEEGGG--TT-EEEEEEESTT---S-S--------------SEEECEEEEEEEEETTEEEEEEEEETTEEE-S
T ss_pred cccCCCceecHHHhcCCCeEEEEEeccc---cee--------------eeecCCEEEEeeccCCCcEEEEeccCCceeec
Confidence 1 13556888899998643 222 389999999942 34 79999999999999
Q ss_pred CCeeecC
Q 012774 447 KGYQVLP 453 (456)
Q Consensus 447 ~G~~v~p 453 (456)
.|+|++.
T Consensus 402 ~gEkl~e 408 (528)
T PF03321_consen 402 FGEKLSE 408 (528)
T ss_dssp SS--EEH
T ss_pred ceeecCH
Confidence 9999874
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.6e-06 Score=80.42 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=31.1
Q ss_pred CCCeeeccceEEE-ccCCcEEEecccccceeeCC---eeecCC
Q 012774 416 PDGWMRTGDLCYI-DEDGFLFIVDRLKDLIKYKG---YQVLPL 454 (456)
Q Consensus 416 ~~g~~~TGDl~~~-~~dg~l~~~GR~~d~ik~~G---~~v~p~ 454 (456)
.+|||+|||+|++ |+||+|+|.||.| +| ++|+|.
T Consensus 207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~ 244 (365)
T PRK09188 207 SRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA 244 (365)
T ss_pred cCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH
Confidence 5899999999998 7999999999997 88 789985
|
|
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0016 Score=65.17 Aligned_cols=128 Identities=14% Similarity=0.096 Sum_probs=79.3
Q ss_pred CCCceEEEecCCCCCHHHHHHHHHhCCCCceEe-ccCccccccccccccCCCCCCCCCccccccCCcE-EEEEcCCCCC-
Q 012774 306 LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ-AYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLE-AKIVDPETGD- 382 (456)
Q Consensus 306 l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~-~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~i~d~~~~~- 382 (456)
.+++++|-+....-...-...++..++++++.. .|++||+-.-+-. .+. +..........|+.. .+.++.+++.
T Consensus 292 WP~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~ginl--~p~-~~p~~~sy~L~p~~~yFEFip~~~~~~ 368 (606)
T PLN02247 292 WPRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYFGINL--KPL-SDPSDVSYTLLPNMAYFEFLPVDKNNG 368 (606)
T ss_pred CCCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEEEecc--CcC-CCccCCceeecCCcEEEEEeecCCCcc
Confidence 578888776555556677778877778887666 7999996433221 111 111112233344442 3444322211
Q ss_pred ----------------------------CCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEc----c
Q 012774 383 ----------------------------SLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYID----E 430 (456)
Q Consensus 383 ----------------------------~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~----~ 430 (456)
.+..|+.-||+|+.-+ |.| .|+.||+.++. .
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~evk~G~~YelVvTt~~---GLY--------------RYrlGDvv~V~GF~n~ 431 (606)
T PLN02247 369 EVIHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTTFT---GLY--------------RYRVGDILMVTGFYNN 431 (606)
T ss_pred cccccccccccccccccccccCceecHHHccCCCeEEEEEEecC---ceE--------------EEecCCEEEEeeecCC
Confidence 2445777788886532 111 48999999883 3
Q ss_pred CCcEEEecccccceeeCCeeecC
Q 012774 431 DGFLFIVDRLKDLIKYKGYQVLP 453 (456)
Q Consensus 431 dg~l~~~GR~~d~ik~~G~~v~p 453 (456)
.-.|.|++|.+.+..+.|+|..-
T Consensus 432 ~P~~~Fv~R~~~vlsi~gEK~tE 454 (606)
T PLN02247 432 APQFRFVQRRNVVLSIDTDKTNE 454 (606)
T ss_pred CceEEEEecCCceeecccccCCH
Confidence 45799999999999999999764
|
|
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00068 Score=67.66 Aligned_cols=127 Identities=16% Similarity=0.116 Sum_probs=77.8
Q ss_pred CCCceEEEecCCCCCHHHHHHHHHhCCCCceEe-ccCccccccccccccCCCCCCCCCc-cccccCCcE-EEEEcCC--C
Q 012774 306 LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ-AYGLTESTAGVFRTVGPDECRRWGS-TGRLSAGLE-AKIVDPE--T 380 (456)
Q Consensus 306 l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~-~yG~tE~~~~~~~~~~~~~~~~~~~-~G~~~~~~~-~~i~d~~--~ 380 (456)
.+++++|-+....-...-...++..++++++.. .|++||+-.-+-. .+. .++.. .....|+.. .+.++.+ +
T Consensus 303 WP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~~ginl--~P~--~~p~~~sy~L~p~~~yFEFip~~~~~ 378 (612)
T PLN02620 303 WPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNL--NPL--CKPSEVSYTLIPTMAYFEFLPVHRNN 378 (612)
T ss_pred CCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceEEEecc--CCC--CCcccceeeecCCcEEEEEeeccCcc
Confidence 578888776555555666677777777887665 6999996433221 111 11122 223334432 3444311 1
Q ss_pred C-----------------C-----CCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEc----cCCcE
Q 012774 381 G-----------------D-----SLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYID----EDGFL 434 (456)
Q Consensus 381 ~-----------------~-----~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~----~dg~l 434 (456)
+ + .+..|+.-||+|+..+ |.| .|+.||+.++. ..-.|
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt~~---GLy--------------RYrlGDvv~V~Gf~n~~P~~ 441 (612)
T PLN02620 379 GVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTTYA---GLY--------------RYRVGDVLRVAGFKNKAPQF 441 (612)
T ss_pred cccccccccccccccccCccccHHHccCCCeEEEEEEecC---ceE--------------EEecCCEEEEeeecCCCceE
Confidence 1 1 1446777788887532 111 48999999883 33579
Q ss_pred EEecccccceeeCCeeecC
Q 012774 435 FIVDRLKDLIKYKGYQVLP 453 (456)
Q Consensus 435 ~~~GR~~d~ik~~G~~v~p 453 (456)
.|++|.+-+..+.|+|..-
T Consensus 442 ~Fv~R~~~~lsi~gEK~tE 460 (612)
T PLN02620 442 SFICRKNVVLSIDSDKTDE 460 (612)
T ss_pred EEEeecCceeecccccCCH
Confidence 9999999999999999764
|
|
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00038 Score=70.04 Aligned_cols=124 Identities=17% Similarity=0.151 Sum_probs=72.7
Q ss_pred CCC---ceEEEecCCCCCHHHHHHHHHhCCCCc-eEeccCccccccccccccCCCCCCCCCccccc--cCCcEEEEEcCC
Q 012774 306 LSS---LETVACGAAPLGKDTIMAFASKFPKVV-LVQAYGLTESTAGVFRTVGPDECRRWGSTGRL--SAGLEAKIVDPE 379 (456)
Q Consensus 306 l~~---lr~v~~gG~~~~~~~~~~~~~~~~~~~-i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~--~~~~~~~i~d~~ 379 (456)
+++ +..+..||-. .-...++..+++.. +...|++||+-. .+- ..+ ...+...+.. +.+.-.+.++.+
T Consensus 301 WPnl~~i~~~~~G~~~---~Y~~~l~~~~g~~~~~~~~Y~ASEg~~-gi~-~~~--~~~p~~~~~~l~~~~~ffEFiP~~ 373 (597)
T PLN02249 301 WPNTKYLDVIVTGAMA---QYIPMLEYYSGGLPMASTIYASSESYF-GIN-LNP--MCKPSEVSYTIMPNMAYFEFLPHN 373 (597)
T ss_pred CCCCCeEEEEecCChH---HHHHHHHHHcCCCccccccccccceEE-Eee-cCC--CCCCCCcceEecCCcEEEEeeecc
Confidence 566 5555666644 55566666666654 566899999532 221 111 0011112211 224445555311
Q ss_pred -CC------------CCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEcc----CCcEEEeccccc
Q 012774 380 -TG------------DSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDE----DGFLFIVDRLKD 442 (456)
Q Consensus 380 -~~------------~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~----dg~l~~~GR~~d 442 (456)
.+ ..+..|+.-||+|+..+ |-| .|+.||+.++.. -=.|.|.||.+.
T Consensus 374 ~~~~~~~~~~~~v~l~eVe~G~~Y~lVvTT~~---GLy--------------RY~iGDvVrvtgf~~~~P~i~F~gR~~~ 436 (597)
T PLN02249 374 HDGDGALDETSLVELADVEVGKEYELVITTYA---GLY--------------RYRVGDILRVTGFHNSAPQFKFIRRKNV 436 (597)
T ss_pred cCCcccCCCCcEecHHHcCCCCeEEEEEEccc---cee--------------EeecCCEEEEeeccCCCcEEEEEccCCc
Confidence 11 12446777788887532 111 389999999842 236899999999
Q ss_pred ceeeCCeeecC
Q 012774 443 LIKYKGYQVLP 453 (456)
Q Consensus 443 ~ik~~G~~v~p 453 (456)
++.+.|+|+.-
T Consensus 437 ~ls~~GEKl~e 447 (597)
T PLN02249 437 LLSIESDKTDE 447 (597)
T ss_pred ceecccccCCH
Confidence 99999999864
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.12 Score=49.74 Aligned_cols=87 Identities=17% Similarity=0.101 Sum_probs=72.1
Q ss_pred eecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCC--CcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEE
Q 012774 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNS--IEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIA 146 (456)
Q Consensus 69 ~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~--~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 146 (456)
-+|+.|+..-+..+|+.|.. .|..+||+|.++..-+ ..-+-..+|+.++|+.++|+.+. ..+.-..++++.++.+|
T Consensus 109 ~~t~~D~~~wa~~~aR~~~~-~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tvI 186 (438)
T COG1541 109 GYTAKDIERWAELLARSLYS-AGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTVI 186 (438)
T ss_pred ecCHHHHHHHHHHHHHHHHH-ccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcEE
Confidence 39999999999999999999 8999999999876621 12267889999999999999873 34566778999999999
Q ss_pred EEccchHHHHh
Q 012774 147 FATSSVVHKLA 157 (456)
Q Consensus 147 i~~~~~~~~~~ 157 (456)
.+.++..-.+.
T Consensus 187 ~~tps~~l~la 197 (438)
T COG1541 187 AATPSYLLYLA 197 (438)
T ss_pred EEChHHHHHHH
Confidence 99988765543
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=87.62 E-value=4.5 Score=39.66 Aligned_cols=86 Identities=14% Similarity=0.074 Sum_probs=65.6
Q ss_pred eecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCC--cHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEE
Q 012774 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSI--EIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIA 146 (456)
Q Consensus 69 ~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~--~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 146 (456)
.+|..++......+++.+.. .|+++||++......+. .....+++....|+..++++... .+.+...++..++.++
T Consensus 94 ~~t~~~~~~~~~~~~~~~~~-~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l 171 (422)
T TIGR02155 94 GYTQNDIDTWSSVVARSIRA-AGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDII 171 (422)
T ss_pred ccCHHHHHHHHHHHHHHHHH-cCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEE
Confidence 37888887777777778877 89999999887665442 22334677889999999887654 5778889999999999
Q ss_pred EEccchHHHH
Q 012774 147 FATSSVVHKL 156 (456)
Q Consensus 147 i~~~~~~~~~ 156 (456)
+..+.....+
T Consensus 172 ~~~Ps~l~~L 181 (422)
T TIGR02155 172 MVTPSYMLNL 181 (422)
T ss_pred EEcHHHHHHH
Confidence 9988766544
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=86.95 E-value=6.3 Score=38.98 Aligned_cols=81 Identities=12% Similarity=0.182 Sum_probs=61.5
Q ss_pred eecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCc--HHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEE
Q 012774 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIE--IPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIA 146 (456)
Q Consensus 69 ~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~--~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 146 (456)
.+|..++...+...+..+.. .|+.+||++.++.+-+.. .....+++...|+.++|... ......+++..++.++
T Consensus 105 ~~T~~dl~~~~~~~~r~~~~-~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l 180 (445)
T TIGR03335 105 FLTWDDWKRYAEKYARSFVS-QGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGI 180 (445)
T ss_pred eecHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEE
Confidence 48999999888888888887 899999999988765543 23455788899998887653 2344677888999988
Q ss_pred EEccchH
Q 012774 147 FATSSVV 153 (456)
Q Consensus 147 i~~~~~~ 153 (456)
+..+...
T Consensus 181 ~~~ps~l 187 (445)
T TIGR03335 181 VASVFKL 187 (445)
T ss_pred EECHHHH
Confidence 8765543
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=81.63 E-value=16 Score=36.63 Aligned_cols=97 Identities=15% Similarity=0.122 Sum_probs=70.0
Q ss_pred CCCcEEEECC---CC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcH-HHHHHHHHHhCCeEecCCC
Q 012774 56 DDTVALINSV---TG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANP 127 (456)
Q Consensus 56 p~~~A~~~~~---~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~-~~~~la~~~~G~~~v~l~~ 127 (456)
++.+|++... +| -.+|++.+...+..... . .+++++|++....+-.... ....++++..|+..+..+.
T Consensus 166 ~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~---~-~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~ 241 (521)
T PRK06187 166 ENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCA---W-LKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRR 241 (521)
T ss_pred ccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHH---h-hCCCCCCEEEEeCCchHHhhHHHHHHHHHhCCEEEecCC
Confidence 4566766432 22 25899998876666555 3 5789999988877644322 3344558888998887766
Q ss_pred CCCHHHHHHHhhhcCCeEEEEccchHHHHh
Q 012774 128 VNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (456)
Q Consensus 128 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 157 (456)
. +++.+...+++.++..+++.+.....+.
T Consensus 242 ~-~~~~~~~~l~~~~~t~l~~~p~~~~~l~ 270 (521)
T PRK06187 242 F-DPENLLDLIETERVTFFFAVPTIWQMLL 270 (521)
T ss_pred C-CHHHHHHHHHHhCCeEEEchHHHHHHHH
Confidence 5 8889999999999999999888776654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 456 | ||||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 3e-62 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 3e-59 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 4e-59 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 4e-59 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 7e-58 | ||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 2e-57 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 3e-57 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 4e-57 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 5e-57 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 3e-55 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 1e-33 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 2e-32 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 5e-30 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 6e-30 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 6e-30 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 3e-28 | ||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 7e-28 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 7e-27 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 3e-23 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 4e-22 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 1e-19 | ||
| 1md9_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb And A | 7e-19 | ||
| 3o82_A | 544 | Structure Of Base N-Terminal Domain From Acinetobac | 5e-17 | ||
| 2qvz_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO | 1e-16 | ||
| 3cw8_X | 504 | 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb | 2e-16 | ||
| 2qvx_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO | 3e-16 | ||
| 3pbk_A | 583 | Structural And Functional Studies Of Fatty Acyl-Ade | 5e-16 | ||
| 1t5d_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl | 6e-16 | ||
| 3dlp_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, | 7e-16 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 1e-15 | ||
| 3e7w_A | 511 | Crystal Structure Of Dlta: Implications For The Rea | 7e-15 | ||
| 3rg2_A | 617 | Structure Of A Two-Domain Nrps Fusion Protein Conta | 7e-15 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 7e-15 | ||
| 3l8c_A | 521 | Structure Of Probable D-Alanine--Poly(Phosphoribito | 3e-14 | ||
| 1t5h_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE | 4e-14 | ||
| 3kxw_A | 590 | The Crystal Structure Of Fatty Acid Amp Ligase From | 8e-14 | ||
| 2wd9_A | 569 | Crystal Structure Of Human Acyl-coa Synthetase Medi | 2e-13 | ||
| 3b7w_A | 570 | Crystal Structure Of Human Acyl-Coa Synthetase Medi | 2e-13 | ||
| 3t5a_A | 480 | Crystal Structure Of N-Terminal Domain Of Faal28 G3 | 3e-13 | ||
| 3e53_A | 480 | Crystal Structure Of N-Terminal Domain Of A Fatty A | 7e-13 | ||
| 3fcc_A | 512 | Crystal Structure Of Dlta Protein In Complex With A | 3e-11 | ||
| 3dhv_A | 512 | Crystal Structure Of Dlta Protein In Complex With D | 3e-11 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 2e-10 | ||
| 3vnq_A | 544 | Co-crystal Structure Of Nrps Adenylation Protein Cy | 1e-09 | ||
| 3ite_A | 562 | The Third Adenylation Domain Of The Fungal Sidn Non | 7e-09 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 7e-09 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 3e-08 | ||
| 4gr5_A | 570 | Crystal Structure Of Slgn1deltaasub In Complex With | 4e-08 | ||
| 4dg8_A | 620 | Structure Of Pa1221, An Nrps Protein Containing Ade | 2e-06 | ||
| 1ry2_A | 663 | Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe | 3e-06 | ||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 1e-05 | ||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 2e-05 | ||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 2e-05 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 3e-05 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 3e-05 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 3e-05 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 3e-05 | ||
| 3qov_A | 436 | Crystal Structure Of A Hypothetical Acyl-Coa Ligase | 2e-04 | ||
| 4gr4_A | 469 | Crystal Structure Of Slgn1deltaasub Length = 469 | 2e-04 | ||
| 2y4n_A | 437 | Paak1 In Complex With Phenylacetyl Adenylate Length | 7e-04 | ||
| 2y27_A | 437 | Crystal Structure Of Paak1 In Complex With Atp From | 9e-04 |
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
| >pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 | Back alignment and structure |
|
| >pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 | Back alignment and structure |
|
| >pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504 | Back alignment and structure |
|
| >pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583 | Back alignment and structure |
|
| >pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511 | Back alignment and structure |
|
| >pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521 | Back alignment and structure |
|
| >pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504 | Back alignment and structure |
|
| >pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590 | Back alignment and structure |
|
| >pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569 | Back alignment and structure |
|
| >pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570 | Back alignment and structure |
|
| >pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w Mutant From Mycobacterium Tuberculosis Length = 480 | Back alignment and structure |
|
| >pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp Ligase Faal28 From Mycobacterium Tuberculosis Length = 480 | Back alignment and structure |
|
| >pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512 | Back alignment and structure |
|
| >pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544 | Back alignment and structure |
|
| >pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non- Ribosomal Peptide Synthetase Length = 562 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
| >pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 | Back alignment and structure |
|
| >pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing Adenylation And Pcp Domains Length = 620 | Back alignment and structure |
|
| >pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 | Back alignment and structure |
|
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|3QOV|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase (Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A Resolution Length = 436 | Back alignment and structure |
|
| >pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469 | Back alignment and structure |
|
| >pdb|2Y4N|A Chain A, Paak1 In Complex With Phenylacetyl Adenylate Length = 437 | Back alignment and structure |
|
| >pdb|2Y27|A Chain A, Crystal Structure Of Paak1 In Complex With Atp From Burkholderia Cenocepacia Length = 437 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 517 bits (1333), Expect = e-175
Identities = 160/474 (33%), Positives = 244/474 (51%), Gaps = 30/474 (6%)
Query: 2 EKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVAL 61
E+ Q+ + +S N++ F S P I +P +S DY+ + L
Sbjct: 28 EQAVSQVMEKQSNNNNSDVIFRSKLPDIYIPNH---LSLHDYIFQNISEFA----TKPCL 80
Query: 62 INSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVI 121
IN TG ++S+ + +A+ + +++ND +L N E + + + G
Sbjct: 81 INGPTGHVYTYSDVHVISRQIAANFHKL-GVNQNDVVMLLLPNCPEFVLSFLAASFRGAT 139
Query: 122 ISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRT----ILIDSPEFDSMTMS 177
+ ANP T +EI++Q + SN + + V K+ L++ + ID E +
Sbjct: 140 ATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEG 199
Query: 178 WNSKHEL-----------DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA 226
EL D ++ DV A+ YSSGTTG KGVMLTH+ L +VA
Sbjct: 200 CLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVD 259
Query: 227 SSPKRVSPA---VMLFTMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEEFRV 282
+ V+L +P FHIY L + ++M +F++ ++L+ ++ +V
Sbjct: 260 GENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKV 319
Query: 283 THAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342
T A + PPIV+A++K T+ YDLSS+ V GAAPLGK+ A +KFP L Q YG+
Sbjct: 320 TVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGM 379
Query: 343 TESTAGVFRTVGPDE---CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTI 399
TE+ + ++G + + G+ G + E KIVDP+TGDSL + GE+ IRG I
Sbjct: 380 TEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQI 439
Query: 400 MKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
MKGY+ P T+ T+ DGW+ TGD+ ID+D LFIVDRLK+LIKYKG+QV P
Sbjct: 440 MKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAP 493
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 497 bits (1283), Expect = e-174
Identities = 147/452 (32%), Positives = 228/452 (50%), Gaps = 28/452 (6%)
Query: 19 TKTFHSLRPPIDLPPEDAPISAVDYV-SSLRATLPWRDDDTVALINSVTGLRVSFSEFTR 77
F S P I +P + YV +L LIN G ++++
Sbjct: 6 EFIFRSKLPDIYIPKN---LPLHSYVLENLS-----NHSSKPCLINGANGDVYTYADVEL 57
Query: 78 RTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQ 137
+AS L + + + D + +S E + + G II+ ANP +T +E+++
Sbjct: 58 TARRVASGLNKI-GIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKH 116
Query: 138 IQLSNPVIAFATSSVVHKLAKLK----HRTILIDSPE-----FDSMTMSWNSKHELDRAK 188
+ S + + K+ + + +DS F +T + ++E +
Sbjct: 117 AKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSELTQA--DENEAPQVD 174
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA---VMLFTMPYFH 245
+ DV A+ YSSGTTG KGVMLTH+ L +VA + V+L +P FH
Sbjct: 175 ISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFH 234
Query: 246 IYGLFFCFRAAALM-ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY 304
IY L + ++M +F++ +L +E+++V+ A V PP++++++K D +
Sbjct: 235 IYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKH 294
Query: 305 DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG---PDECRRW 361
DLSSL + G APLGK+ +KFP+ L Q YG+TE+ + + +
Sbjct: 295 DLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKP 354
Query: 362 GSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMR 421
G+ G + E KIVDPETG SLP + GE+ IRG IMKGY+ +PE TS T+ +GW+
Sbjct: 355 GACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLH 414
Query: 422 TGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
TGD+ YID+D LFIVDRLK+LIKYKG+QV P
Sbjct: 415 TGDIGYIDDDDELFIVDRLKELIKYKGFQVAP 446
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 489 bits (1261), Expect = e-170
Identities = 132/452 (29%), Positives = 216/452 (47%), Gaps = 28/452 (6%)
Query: 22 FHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNS 81
P L +A + + T+A ++ + ++++E+ +
Sbjct: 8 KKGPAPFYPLED----GTAGEQLHK-AMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVR 62
Query: 82 LASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLS 141
LA ++ L+ N V S NS++ + L +GV ++PAN + E E+ + +S
Sbjct: 63 LAEAMKRY-GLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNIS 121
Query: 142 NPVIAFATSSVVHKLAK------LKHRTILIDSPEFDSMTMSW------------NSKHE 183
P + F + + K+ + + I++DS S N
Sbjct: 122 QPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDF 181
Query: 184 LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA--VMLFTM 241
+ + +A IM SSG+TG KGV L HR + + +L +
Sbjct: 182 VPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVV 241
Query: 242 PYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST 301
P+ H +G+F V+M RF+ ++ L++++++++ A + P + +K
Sbjct: 242 PFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLI 301
Query: 302 DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRW 361
D YDLS+L +A G APL K+ A A +F + Q YGLTE+T+ + + P+ +
Sbjct: 302 DKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAI--LITPEGDDKP 359
Query: 362 GSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMR 421
G+ G++ EAK+VD +TG +L + GEL +RGP IM GYV PE T+A + DGW+
Sbjct: 360 GAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLH 419
Query: 422 TGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
+GD+ Y DED FIVDRLK LIKYKGYQV P
Sbjct: 420 SGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAP 451
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 485 bits (1252), Expect = e-169
Identities = 130/459 (28%), Positives = 220/459 (47%), Gaps = 29/459 (6%)
Query: 15 FNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSE 74
+ +P + SA + + + +A N+VTG+ S++E
Sbjct: 4 MENDENIVVGPKPFYPIEE----GSAGTQL--RKYMERYAKLGAIAFTNAVTGVDYSYAE 57
Query: 75 FTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEI 134
+ ++ L LQN L + + S N E I + L +GV ++P N + T E+
Sbjct: 58 YLEKSCCLGKALQNY-GLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLREL 116
Query: 135 SRQIQLSNPVIAFATSSVVHKLAKLKHRT------ILIDSPEFDSMTMSWNSKHELDRAK 188
+ +S P I F++ + K+ ++ +++DS ++ + +
Sbjct: 117 VHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPP 176
Query: 189 VC------------QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVA--SSFASSPKRVSP 234
+ VA IM SSG+TG KGV LTH N+ + +
Sbjct: 177 GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPG 236
Query: 235 AVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVA 294
+L +P+ H +G+F V++ +FD + LK +++++ T + P +
Sbjct: 237 TAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAI 296
Query: 295 MSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354
++K + YDLS+L +A G APL K+ A A +F + Q YGLTE+T+ + +
Sbjct: 297 LNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAI--IIT 354
Query: 355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL 414
P+ + G++G++ +AK++D +T SL P + GE+ ++GP +MKGYV PE T +
Sbjct: 355 PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELI 414
Query: 415 LPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
+GW+ TGD+ Y DE+ FIVDRLK LIKYKGYQV P
Sbjct: 415 DEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPP 453
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 397 bits (1022), Expect = e-134
Identities = 116/460 (25%), Positives = 189/460 (41%), Gaps = 43/460 (9%)
Query: 22 FHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVT------GLRVSFSEF 75
+ P + P IS D + + + A+I++ ++F E
Sbjct: 7 YKIGFPSLYYPK----ISLADRIDAAAEKFG----EKTAIISAEPKFPSEFPESMNFLEI 58
Query: 76 TRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEIS 135
T LAS + + K + V NSI+ + ++L + P NP+ E+
Sbjct: 59 CEVTKKLASGISRK-GVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELE 117
Query: 136 RQIQLSNPVIAFATSSVVHKLAKLKHRT----ILIDSPEFDSMT--MSWNSKHELDRAKV 189
+ S S + + +T + + E +S++ M S+ +
Sbjct: 118 HILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNSLSEVMDSGSEDFENVKVN 177
Query: 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL 249
+ DVA I Y+ GTTG KGVMLTH NL A ++ ++ MP FH
Sbjct: 178 PEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLS-HMDTIVGCMPMFHSAEF 236
Query: 250 ---FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG--STDGY 304
VVM F+ +M+ + +E+++ T + PP + + S Y
Sbjct: 237 GLVNLMVTVGN---EYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTY 293
Query: 305 DLSSLETVACGAAPLGKDTIMAFASKF------PKVVLVQAYGLTESTAGVFRTVGP-DE 357
D S L+ A GA P+ + P++ Q +G+TE+ V T P
Sbjct: 294 DWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMV--TTNPPLR 351
Query: 358 CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP- 416
+ + G + +E K++ E G L G+ GE+ IRGP I KGY +
Sbjct: 352 LDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYD 411
Query: 417 ---DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
+ RTGD+ +IDE+GFL DR+K++IKYKGY + P
Sbjct: 412 EKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAP 451
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 326 bits (838), Expect = e-107
Identities = 110/407 (27%), Positives = 180/407 (44%), Gaps = 16/407 (3%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
D +A+ + G ++S++E R +A+ L L D + S+E +LY
Sbjct: 14 DDPHKLAIETA-AGDKISYAELVARAGRVANVLVAR-GLQVGDRVAAQTEKSVEALVLYL 71
Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRT---ILIDSPE 170
+ + G + P N T E+ I + P I S +A + + + P+
Sbjct: 72 ATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPD 131
Query: 171 FDSMTMSWNSKHELDRAKVCQS--DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS 228
+ A + + D+AAI+Y+SGTTGR KG ML+H NL + +
Sbjct: 132 GRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW 191
Query: 229 PKRVSPA-VMLFTMPYFHIYGLFFCFRAAALM-ETAVVMQRFDLKMMLKAVEEFRVTHAA 286
R +P V++ +P +H +GLF + + + +FD +L + R T
Sbjct: 192 --RFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RATVLM 247
Query: 287 VTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTEST 346
P + + + G+APL DT +++K +++ YG+TE+
Sbjct: 248 GVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTG-HAVLERYGMTETN 306
Query: 347 AGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGE 406
D R G+ G G+ A++ DPETG LP G G + ++GP + KGY
Sbjct: 307 MNTSNP--YDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRM 364
Query: 407 PEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
PE T + DG+ TGDL IDE G++ I+ R KDL+ G+ V P
Sbjct: 365 PEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYP 411
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 310 bits (797), Expect = e-101
Identities = 109/403 (27%), Positives = 176/403 (43%), Gaps = 14/403 (3%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
A + T +R+++++ N A L ++K D +L NS+E L++
Sbjct: 31 RLQAYVEPSTDVRMTYAQMNALANRCADVLTA-LGIAKGDRVALLMPNSVEFCCLFYGAA 89
Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRT----ILIDSPEFD 172
LG + P N E+S + S + + + ++ + + D D
Sbjct: 90 KLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGAD 149
Query: 173 SMTMSWNSKHELDR-AKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKR 231
S+ S + + D IMY+SGTTG KGV+ TH ++ +A +S ++
Sbjct: 150 SLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI--D 207
Query: 232 VSPA-VMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPP 290
V +L +P FH+ L +A T + M +FD + + E RV P
Sbjct: 208 VRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPA 267
Query: 291 IVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVF 350
I+ M + D G AP+ + I +A+K + +VQ Y LTES G
Sbjct: 268 ILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKN--IEVVQGYALTESCGGGT 325
Query: 351 RTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVT 410
+ D R+ GS GR + + + + G G EGE+ I+ ++K Y PE T
Sbjct: 326 LLLSEDALRKAGSAGRATMFTDVAVRGDD-GVIREHG-EGEVVIKSDILLKEYWNRPEAT 383
Query: 411 SATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
+GW RTGD+ ID++G+L+I DRLKD+I G V P
Sbjct: 384 RDA-FDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYP 425
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 301 bits (774), Expect = 9e-98
Identities = 107/407 (26%), Positives = 168/407 (41%), Gaps = 25/407 (6%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
D A + V G+R++ ++ R LAS L + D +LS N E+ L ++
Sbjct: 21 DRTAFM--VDGVRLTHRDYLARAERLASGLLR-DGVHTGDRVAILSQNCSEMIELIGAVA 77
Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSS-------VVHKLAKLKHRTILIDSP 169
+G I+ P N EI+ + P + A + V+ L +K + D
Sbjct: 78 LIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGS 137
Query: 170 EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP 229
+ S + +D I++++ GR +G +++ NL A +S +
Sbjct: 138 GPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW- 196
Query: 230 KRVSPA-VMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVT 288
R++ A V L +P FH+ GL +V+ +FD + +E +VT A
Sbjct: 197 -RLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEF 255
Query: 289 PPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG 348
P++ + L+SL V P TI F + P +G +E++
Sbjct: 256 APMLGNILD--QAAPAQLASLRAVTGLDTPE---TIERFEATCPNATFWATFGQSETSGL 310
Query: 349 VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPE 408
T P R S GR +VD E LPPG+ GE+ +RGPT+ KGY
Sbjct: 311 S--TFAPYR-DRPKSAGRPLFWRTVAVVDAE-DRPLPPGEVGEIVLRGPTVFKGYWNNAA 366
Query: 409 VTSATLLPDGWMRTGDLCYIDEDGFLFIVDRL--KDLIKYKGYQVLP 453
T +GW TGD+ D DG+LF R K+LIK G V P
Sbjct: 367 ATQHA-FRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYP 412
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 299 bits (767), Expect = 3e-96
Identities = 100/433 (23%), Positives = 167/433 (38%), Gaps = 40/433 (9%)
Query: 42 DYVSSLRATLPWRDD--------------DTVALINSVTGLRVSFSEFTRRTNSLASYLQ 87
+ + R W + D +A+ S+ E R + LA+ Q
Sbjct: 11 ELAETYRKNGCWAGETFGDLLRDRAAKYGDRIAITCG--NTHWSYRELDTRADRLAAGFQ 68
Query: 88 NVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAF 147
+ + + D V N E + F+L LG + A P + SEI+ + +
Sbjct: 69 KL-GIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYI 127
Query: 148 ATSS------------VVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVA 195
+ V KL LK+ + ++ EF + + +V SDVA
Sbjct: 128 IPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPL--EDLHTEPVKLPEVKSSDVA 185
Query: 196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA-VMLFTMPYFHIYGLFFCFR 254
+ S G+TG K + TH + ++ S + + V L +P H Y L
Sbjct: 186 FLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC--WLDHSTVYLAALPMAHNYPLSSPGV 243
Query: 255 AAALME--TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETV 312
L V+ +E +VT A+ PP+ + S+ DLSSL+ +
Sbjct: 244 LGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVL 303
Query: 313 ACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGR-LSAGL 371
G A + + F L Q +G+ E R P+E + G+ +S
Sbjct: 304 QVGGAKFSAEAARRVKAVFG-CTLQQVFGMAEGLVNYTRLDDPEE-IIVNTQGKPMSPYD 361
Query: 372 EAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDED 431
E+++ D + PG+ G L RGP ++GY E +A+ DG+ RTGD+ + D
Sbjct: 362 ESRVWDD-HDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRD 420
Query: 432 GFLFIVDRLKDLI 444
G++ + R KD I
Sbjct: 421 GYIVVEGRAKDQI 433
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 296 bits (760), Expect = 1e-95
Identities = 96/407 (23%), Positives = 164/407 (40%), Gaps = 19/407 (4%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
D AL GLR++ +E R ++A+ L L V++ NS ++ I +L
Sbjct: 17 DHCALAVPARGLRLTHAELRARVEAVAARLHA-DGLRPQQRVAVVAPNSADVVIAILALH 75
Query: 117 SLGVIISPANPVNTESEISRQIQLSNP--VIAFATSSVVHKLAKLKHRTILIDSPEFDSM 174
LG + + NP +E++ I+ + V + + +I +
Sbjct: 76 RLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRD 135
Query: 175 TMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSP 234
++ ++ + + A I Y+SGTTG K ++ R + V R
Sbjct: 136 GEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGR 195
Query: 235 A-VMLFTMPYFHIYGLFFCFRAAALME--TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPI 291
V+L MP +H+ G F AAL T VV++ F L+ V++ +VT TP
Sbjct: 196 HNVVLGLMPLYHVVGFF-AVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTH 254
Query: 292 VVAM--SKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV 349
+ A+ + + L SL V A + + P V YG TE+ +
Sbjct: 255 LDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLP-GEKVNIYGTTEAMNSL 313
Query: 350 FRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDS--LPPGKEGELSIRGP-TIMKGYVGE 406
+ + G+ E +IV G + G+EGEL + + GY+ +
Sbjct: 314 YMRQ-----PKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQ 368
Query: 407 PEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
P+ T+ L DGW RT D+ +G + I+ R+ D+I G + P
Sbjct: 369 PQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHP 414
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 297 bits (763), Expect = 8e-95
Identities = 93/410 (22%), Positives = 161/410 (39%), Gaps = 26/410 (6%)
Query: 53 WRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILY 112
D++A+I+ ++S+ E + ++LA L+ + +TA V N E+ I +
Sbjct: 36 HAASDSIAVIDG--ERQLSYRELNQAADNLACSLRRQG-IKPGETALVQLGNVAELYITF 92
Query: 113 FSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSS------------VVHKLAKLK 160
F+LL LGV A + SE++ P + A V + + ++
Sbjct: 93 FALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIR 152
Query: 161 HRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAA 220
+L DS E + + + +VA S GTTG K + TH + +
Sbjct: 153 VVQLLNDSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYS 212
Query: 221 VASSFASSPKRVSPA-VMLFTMPYFHIYGLFFCFRAAALME--TAVVMQRFDLKMMLKAV 277
V S + + L +P H Y + + T V+ + +
Sbjct: 213 VRRSVEIC--QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLI 270
Query: 278 EEFRVTHAAVTPPIVVAM--SKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVV 335
E+ +V A+ PP V + L+SL+ + G A L ++
Sbjct: 271 EKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIG-CQ 329
Query: 336 LVQAYGLTESTAGVFRTVGPDECRRWGSTGR-LSAGLEAKIVDPETGDSLPPGKEGELSI 394
L Q +G+ E R E + + G + E + D E G+ LP G+ G L
Sbjct: 330 LQQVFGMAEGLVNYTRLDDSAE-KIIHTQGYPMCPDDEVWVADAE-GNPLPQGEVGRLMT 387
Query: 395 RGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLI 444
RGP +GY P+ ++ +G+ +GDL ID +G++ + R KD I
Sbjct: 388 RGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQI 437
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 292 bits (749), Expect = 5e-94
Identities = 91/416 (21%), Positives = 166/416 (39%), Gaps = 40/416 (9%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
+A+ + ++ + LA L + + + NSI+ IL +
Sbjct: 16 HHIAITDG--QESYTYQNLYCEASLLAKRL----KAYQQSRVGLYIDNSIQSIILIHACW 69
Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTIL----------- 165
+ I+ N T +E++ Q++ + + F T + + ++ +
Sbjct: 70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNG 129
Query: 166 -------IDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLT 218
I + + S + D+A+IM++SGTTG K V T RN
Sbjct: 130 LLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHY 189
Query: 219 AAVASSFASSPKRVSPA-VMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAV 277
A+ S L +P +HI GL RA T ++ +F+ + +L +
Sbjct: 190 ASAIGCKESL--GFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTMI 247
Query: 278 EEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLV 337
+ R+TH ++ P + + + G + Y+L + G A L I + +
Sbjct: 248 KNERITHISLVPQTLNWLMQQGLHEPYNLQK---ILLGGAKLSATMIETALQYN--LPIY 302
Query: 338 QAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP 397
++G+TE+ + R + G SA ++ KI +P GEL I+G
Sbjct: 303 NSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEG------HGELMIKGA 356
Query: 398 TIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
+M GY+ ++T +G+ TGD+ ID +G++ I DR KDLI G + P
Sbjct: 357 NVMNGYLYPTDLTGT--FENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYP 410
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 293 bits (752), Expect = 6e-94
Identities = 95/435 (21%), Positives = 165/435 (37%), Gaps = 40/435 (9%)
Query: 42 DYVSSLRATLPWRDD--------------DTVALINSVTGLRVSFSEFTRRTNSLASYLQ 87
+ R W D ++A+I ++S+ E R + +LA+ L
Sbjct: 16 ERAQHYRNKGYWIDQPLTRILTVGVQSHPHSLAII--CGERQLSYIELDRLSTNLATRLA 73
Query: 88 NVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAF 147
L K DTA V N E I++F+LL GV++ A + + E++ I+ P +
Sbjct: 74 EKG-LGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLI 132
Query: 148 ATSS------------VVHKLAKLKHRTILIDSPEFDSMT--MSWNSKHELDRAKVCQSD 193
+ + + +L + + ++ +D + +
Sbjct: 133 GSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPAETFVDFSSTPADE 192
Query: 194 VAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA-VMLFTMPYFHIYGLFFC 252
VA S G+TG K + TH + +V +S ++ +L +P H + L
Sbjct: 193 VAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC--GLNSNTRLLCALPAPHNFMLSSP 250
Query: 253 FRAAALME--TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLE 310
L V+ + ++ +V A++ P V+ + + + SL+
Sbjct: 251 GALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLK 310
Query: 311 TVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGR-LSA 369
+ G A + L Q +G+ E R DE + + + GR +S+
Sbjct: 311 LLQVGGASFPESLARQVPEVLN-CKLQQVFGMAEGLVNYTRLDDSDE-QIFTTQGRPISS 368
Query: 370 GLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYID 429
E KIVD +P G+ G L+ RGP GY PE S D + +GDL
Sbjct: 369 DDEIKIVDE-QYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRT 427
Query: 430 EDGFLFIVDRLKDLI 444
DG L +V R+KD I
Sbjct: 428 PDGNLRVVGRIKDQI 442
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 290 bits (744), Expect = 2e-93
Identities = 94/442 (21%), Positives = 174/442 (39%), Gaps = 39/442 (8%)
Query: 23 HSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSL 82
H +P S +L D AL ++++E +
Sbjct: 7 HHHHSSGLVPRGSHMSSLFP---ALSPAPTGAPADRPALR--FGERSLTYAELAAAAGAT 61
Query: 83 ASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSN 142
A R+ V +T ++E + + L GV P NP + + E++ + S
Sbjct: 62 AG------RIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSA 115
Query: 143 P--VIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYS 200
P V+A + + L L+ + + + + D A ++Y+
Sbjct: 116 PSLVLAPPDAELPPALGALERVDVDVRARG------------AVPEDGADDGDPALVVYT 163
Query: 201 SGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA-VMLFTMPYFHIYGLFFCFRAAALM 259
SGTTG KG ++ R L + + + + + V++ +P FH++GL
Sbjct: 164 SGTTGPPKGAVIPRRALATTLDALADAW--QWTGEDVLVQGLPLFHVHGLVLGILGPLRR 221
Query: 260 -ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDG---YDLSSLETVACG 315
+ + RF + + + + T P + +++ D L+ + G
Sbjct: 222 GGSVRHLGRFSTEGAARELND-GATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSG 280
Query: 316 AAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKI 375
+A L A+ +++ YG+TE+ +V D R G+ G G+E ++
Sbjct: 281 SAALPVHDHERIAAATG-RRVIERYGMTETLMNT--SVRADGEPRAGTVGVPLPGVELRL 337
Query: 376 VDPETGD--SLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGF 433
V+ + +L GE+ +RGP + Y+ P+ T+A DG+ RTGD+ D DG+
Sbjct: 338 VEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGY 397
Query: 434 LFIVDR-LKDLIKYKGYQVLPL 454
+ IV R DLIK GY++
Sbjct: 398 VRIVGRKATDLIKSGGYKIGAG 419
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 287 bits (736), Expect = 7e-92
Identities = 99/445 (22%), Positives = 171/445 (38%), Gaps = 37/445 (8%)
Query: 28 PIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQ 87
++ PP + Y+ L T A I+ ++ E R AS L+
Sbjct: 15 TVEAPPAL--FNFAAYLFRLNETRA----GKTAYID--DTGSTTYGELEERARRFASALR 66
Query: 88 NVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAF 147
+ + + ++ +++ +P+ + L GV+ AN + T ++ + S+
Sbjct: 67 TL-GVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVI 125
Query: 148 ATSSVVHKLAKLKH-----RTILIDSPEFDSMTMSWNSKHEL--------DRAKVCQSDV 194
A+ ++V + + LI S +S EL A D+
Sbjct: 126 ASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGCDDI 185
Query: 195 AAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA-VMLFTMPYFHIYGL---- 249
A +YSSG+TG+ KG + TH NL A +A ++ V+ F YGL
Sbjct: 186 AFWLYSSGSTGKPKGTVHTHANL-YWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGL 244
Query: 250 FFCFRAAALMETAVVM-QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSS 308
F A TA++M +R + + E R T P + M + +
Sbjct: 245 TFPLSVGA---TAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVA 301
Query: 309 LETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLS 368
+ L ++ F + F ++ G TE +F + +G+TGR
Sbjct: 302 IRICTSAGEALPREIGERFTAHF-GCEILDGIGSTE-MLHIFLSNRAGA-VEYGTTGRPV 358
Query: 369 AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYI 428
G E ++ D E G ++P G+ G+L I+GP+ Y E + AT W+R+GD
Sbjct: 359 PGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSGDKYCR 416
Query: 429 DEDGFLFIVDRLKDLIKYKGYQVLP 453
+G R D++K G V P
Sbjct: 417 LPNGCYVYAGRSDDMLKVSGQYVSP 441
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 192 bits (490), Expect = 2e-55
Identities = 97/460 (21%), Positives = 169/460 (36%), Gaps = 69/460 (15%)
Query: 45 SSLRATLPWR-----DDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAF 99
SL + R + + +N +++ + + ++A+ LQ D
Sbjct: 11 QSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQA-EGAKPGDRVL 69
Query: 100 VLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISR---QIQLSNPVIAFATSSVVHKL 156
+L + + + L G I P P E + + + S PVI + + K
Sbjct: 70 LLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKF 129
Query: 157 AK--LKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTH 214
L + P ++ N + +D+A + Y+SG+T KGVM++H
Sbjct: 130 TADELNTNPKFLKIPAIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSH 189
Query: 215 RNLTA---AVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCF-------RAAALMETAVV 264
NL + +SF + + ++ +P H GL C A +M
Sbjct: 190 HNLLDNLNKIFTSFHMNDET----IIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSF 245
Query: 265 MQRFDLKMMLKAVEEFRVTHAAVTPP----IVVAMSKGGSTDGYDLSSLETVACGAAPLG 320
+Q LK + +++ T + P V + +G DLSS T GA P+
Sbjct: 246 LQN--PLSWLKHITKYKATISGS-PNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVR 302
Query: 321 KDTIMAFASKF-----PKVVLVQAYGLTESTAGV-FRTVGPDECRRWGSTGRLSAGL--- 371
++T+ F F K YGL E+T V T G + +
Sbjct: 303 EETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHF 362
Query: 372 -------------------EAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSA 412
E KI+DP+T + GE+ ++ ++ KGY +PE T
Sbjct: 363 ADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRH 422
Query: 413 TL--------LPDGWMRTGDLCYIDEDGFLFIVDRLKDLI 444
++RTGDL ++ + L++ R+KDLI
Sbjct: 423 AFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLI 461
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 190 bits (486), Expect = 5e-55
Identities = 100/411 (24%), Positives = 175/411 (42%), Gaps = 52/411 (12%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
R +++E +R L L+ + + D L N YF++ +G ++ +
Sbjct: 47 RTTYAEVYQRARRLMGGLRALG-VGVGDRVATLGFNHFRHLEAYFAVPGMGAVL---HTA 102
Query: 129 NT---ESEISRQIQLSNPVIAFATSSVVHKLAKLKHRT------ILIDSP------EFDS 173
N EI+ + + + +++ + ++ +++D ++
Sbjct: 103 NPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEE 162
Query: 174 MTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRN-----LTAAVASSFASS 228
+ + + Y++GTTG KGV+ +HR L A++ A S
Sbjct: 163 ALGEEADPVRVP-----ERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALS 217
Query: 229 PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVM--QRFDLKMMLKAVEEFRVTHAA 286
K V+L +P FH+ + AA L+ V+ R D +++ + VT A
Sbjct: 218 EK----DVVLPVVPMFHVNAWCLPY-AATLVGAKQVLPGPRLDPASLVELFDGEGVTFTA 272
Query: 287 VTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTEST 346
P + +A++ + G+ L +L + G + + I F V + Q YGLTE T
Sbjct: 273 GVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERM--GVEVRQGYGLTE-T 329
Query: 347 AGV---------FRTVGPDE-CRRWGSTGRLSAGLEAKIVDPETGDSLPP-GKE-GELSI 394
+ V ++ +E TG + ++ D E G +P GK GE+ +
Sbjct: 330 SPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEE-GRPVPKDGKALGEVQL 388
Query: 395 RGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIK 445
+GP I GY G E T + L PDG+ RTGD+ DE+G++ I DRLKDLIK
Sbjct: 389 KGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIK 439
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 5e-55
Identities = 81/439 (18%), Positives = 159/439 (36%), Gaps = 64/439 (14%)
Query: 54 RDDDTVALI---NSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI 110
+ + AL L +F E + + A+ L L + D V+ E +
Sbjct: 55 KRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWL 114
Query: 111 LYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKH-----RTIL 165
+ + G+I P ++I ++Q+S A V+ ++ + R L
Sbjct: 115 VILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKL 174
Query: 166 IDSPEFDSMTMSW-----NSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAA 220
+ S + +++ + + + +AI ++SGT+G K ++
Sbjct: 175 LVSEKSCDGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS----- 229
Query: 221 VASSFASSPKRVSPAVMLFTMPYFH----------------IYGLFFCFRAAALMETAVV 264
S + + I + +
Sbjct: 230 ------------SLGLKAKMDAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTF 277
Query: 265 MQ---RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGK 321
+ +FD ++LK + + + PIV M Y L+ L
Sbjct: 278 VHLLPKFDPLVILKTLSSYPIKSMM-GAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLP 336
Query: 322 DTIMAFASKFPKVVLVQAYGLTESTA--GVFRTVGPDECRRWGSTGRLSAGLEAKIVDPE 379
+T+ + ++ + + ++YG TE+ V +T+ + G G ++ + +I+D +
Sbjct: 337 ETLENWRAQT-GLDIRESYGQTETGLTCMVSKTMKI----KPGYMGTAASCYDVQIIDDK 391
Query: 380 TGDSLPPGKEGELSIRGPT-----IMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFL 434
G+ LPPG EG++ IR I GYV P+ T+A + + GD DEDG+
Sbjct: 392 -GNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYF 449
Query: 435 FIVDRLKDLIKYKGYQVLP 453
+ R D+I GY++ P
Sbjct: 450 QFMGRADDIINSSGYRIGP 468
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 188 bits (479), Expect = 1e-54
Identities = 92/486 (18%), Positives = 167/486 (34%), Gaps = 80/486 (16%)
Query: 23 HSLRPPIDLPPEDAPISAVDYVSSLRATLPWR-----DDDTVALINSVTG-----LRVSF 72
H L P + +S SL A L D ++ + +++
Sbjct: 6 HHHHHSSGLVPRGSHMSV----RSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTW 61
Query: 73 SEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTES 132
S+ RRT ++A L D + + +E + + L G I P +
Sbjct: 62 SQLYRRTLNVAQELSRCGS--TGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGV 119
Query: 133 EISR---QIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSM-TMSWNSKHELDRAK 188
R + S+PV TSS V + + R P + + ++ + +
Sbjct: 120 TDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLDLDAPNGYTFKE 179
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSPA--VMLFTMPY 243
A + Y+SG+T GV+++H+N+ + S + + + P ++ +P+
Sbjct: 180 DEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPF 239
Query: 244 FHIYGLFFCF-------RAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPP----IV 292
+H GL A L +QR + + +A P +
Sbjct: 240 YHDMGLVIGICAPILGGYPAVLTSPVSFLQRPAR--WMHLMASDFHAFSAA-PNFAFELA 296
Query: 293 VAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKF-----PKVVLVQAYGLTESTA 347
+ G DL ++ T+ G+ + TI FA +F + V+ +Y L E+T
Sbjct: 297 ARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATV 356
Query: 348 GV-----------------------FRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSL 384
V + S + +IVD +T
Sbjct: 357 YVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSP-IVRIVDSDTCIEC 415
Query: 385 PPGKEGELSIRGPTIMKGYVGEPEVTSATL-----------LPDGWMRTGDLCYIDEDGF 433
P G GE+ + G + GY +P+ + T W+RTGD ++ DG
Sbjct: 416 PDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGK 474
Query: 434 LFIVDR 439
+FI+ R
Sbjct: 475 MFIIGR 480
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 6e-43
Identities = 82/426 (19%), Positives = 151/426 (35%), Gaps = 73/426 (17%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
+F + ++ A++ + K D + + + L LG I PA +
Sbjct: 86 IFTFKDLKYYSDKAANFFVKH-GIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHM 144
Query: 129 NTESEISRQIQLSNP--VIAFATSSVVHKLAKLKHRT------ILIDSPEFDSMTMSWNS 180
+I +I+ + ++ A V ++ + + + +
Sbjct: 145 LKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFR- 203
Query: 181 KHELDRA-----------KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP 229
EL+ + D+ + +SSGT G K V +
Sbjct: 204 -KELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGH--------- 253
Query: 230 KRVSPAVMLFTMPYFH----------------IYGLFFCFRAAALMETAVVM---QRFDL 270
+ T Y+ ++ + AV + RF+
Sbjct: 254 --------ILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEA 305
Query: 271 KMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASK 330
K ML+ ++ VT PP + Y+ S+L+ PL + F
Sbjct: 306 KNMLEKASKYGVTTFC-APPTIYRFLIKEDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEF 364
Query: 331 FPKVVLVQAYGLTESTA--GVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGK 388
+ L++ +G TE+ F + P + GS G+ + G + +++D + G G+
Sbjct: 365 T-GIKLMEGFGQTETVVTIATFPWMEP----KPGSIGKPTPGYKIELMDRD-GRLCEVGE 418
Query: 389 EGELSIRGPT-----IMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDL 443
EGE+ I + Y +PE T T DG+ TGD+ ++DEDG+L+ V R D+
Sbjct: 419 EGEIVINTMEGKPVGLFVHYGKDPERTEETWH-DGYYHTGDMAWMDEDGYLWFVGRADDI 477
Query: 444 IKYKGY 449
IK GY
Sbjct: 478 IKTSGY 483
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 127 bits (319), Expect = 7e-33
Identities = 47/262 (17%), Positives = 77/262 (29%), Gaps = 31/262 (11%)
Query: 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKR--VSPAVMLFTMPYF-HIY 247
+ S GTTG K V+ + A ++ + R L +P HI
Sbjct: 90 ADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIV 149
Query: 248 GLFFCFRAAAL----------------------METAVVMQRFDLKMMLKAVEEFRVTHA 285
G RA L T + + + +
Sbjct: 150 GAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFL 209
Query: 286 AVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASK-FPKVVLVQAYGLTE 344
TPP++ + K SL + G L D I AS+ P +YG T
Sbjct: 210 VTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTS 269
Query: 345 STAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGY- 403
+ + E ++ S + +VD T ++ G+ G + + +
Sbjct: 270 ALGVSRSLLITSESQQ-VIYDSFSPFITYDVVDSITAQTVEYGERGNVIVT--HLSPWAF 326
Query: 404 -VGEPEVTSATLLPDGWMRTGD 424
E +A LP GD
Sbjct: 327 YPRVAERDTAIRLPGVSGFAGD 348
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-23
Identities = 63/308 (20%), Positives = 111/308 (36%), Gaps = 30/308 (9%)
Query: 141 SNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYS 200
S +AF + + +L + +S ++ ++ A ++Y+
Sbjct: 125 SRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQDTSDILNN-YPENLDAYLLYT 183
Query: 201 SGTTGRVKGVMLTHRNLTAAVAS------SFASSPKRVSPA--VMLFTMPYF--HIYGLF 250
SG+TG KGV ++ NL++ + + A + + F HI +F
Sbjct: 184 SGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMF 243
Query: 251 FCFRAAALMETAVVMQRFDLKM--MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSS 308
+R V + + + E VTHA + P ++ D
Sbjct: 244 LAWRFGL----CAVTGERLSMLDDLPRTFRELGVTHAGIVP----SLLDQTGLVPEDAPH 295
Query: 309 LETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGST---G 365
L + G + T ++S +V LV YG TE T + + G T G
Sbjct: 296 LVYLGVGGEKMTPRTQQIWSSS-DRVALVNVYGPTEVT--IGCSAGR--ILPDSDTRCIG 350
Query: 366 RLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWM-RTGD 424
A ++ P + + + G GEL I G + GY+ P+ + M RTGD
Sbjct: 351 HPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGD 410
Query: 425 LCYIDEDG 432
+ +D D
Sbjct: 411 IVRMDADS 418
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 98.7 bits (247), Expect = 2e-22
Identities = 68/312 (21%), Positives = 116/312 (37%), Gaps = 40/312 (12%)
Query: 141 SNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYS 200
S + + + + +T+ + + D+ V + + I+Y+
Sbjct: 98 SGAELLIHAAGLSIDAVGQQIQTVSAEELLENE-----GGSVSQDQW-VKEHETFYIIYT 151
Query: 201 SGTTGRVKGVMLTHR---NLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAA- 256
SG+TG KGV ++ + T + + F S ++ + P F F +
Sbjct: 152 SGSTGNPKGVQISAANLQSFTDWICADFPVSGGKI---FLNQA-P--------FSFDLSV 199
Query: 257 -----ALMETA-VVM----QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDL 306
L + K++ + +++ + TP V L
Sbjct: 200 MDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLL 259
Query: 307 SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV-FRTVGPDECRRWGST- 364
+T L A +FPK + YG TE+T V + D R S
Sbjct: 260 PHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLP 319
Query: 365 -GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD--GWM- 420
G + I+D E G LP G++GE+ I GP++ +GY+GEPE+T W
Sbjct: 320 VGFAKPDMNIFIMDEE-GQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAY 378
Query: 421 RTGDLCYIDEDG 432
RTGD +I +DG
Sbjct: 379 RTGDAGFI-QDG 389
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 1e-20
Identities = 65/298 (21%), Positives = 115/298 (38%), Gaps = 36/298 (12%)
Query: 155 KLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTH 214
+ L R + D+ + D + + A V + I+Y+SG+TG KGV +T+
Sbjct: 109 TVTDLPVRIVSEDNLK-DIFFTHKGNTPNPEHA-VKGDENFYIIYTSGSTGNPKGVQITY 166
Query: 215 R---NLTAAVASSFASSPKRVSPAVMLFTMPY------FHIYGLFFCFRAAALMETA-VV 264
+ T F +V + P+ IY +L+ +
Sbjct: 167 NCLVSFTKWAVEDFNLQTGQV---FLNQA-PFSFDLSVMDIYP--------SLVTGGTLW 214
Query: 265 M----QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLG 320
K + ++E+ + TP S L +++T L
Sbjct: 215 AIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLP 274
Query: 321 KDTIMAFASKFPKVVLVQAYGLTESTAGV-FRTVGPDECRRWGST--GRLSAGLEAKIVD 377
+ +FPK ++ YG TE+T V V + ++ S G + I+
Sbjct: 275 NEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK 334
Query: 378 PETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSA--TLLPDGWM-RTGDLCYIDEDG 432
+ G P G++GE+ I GP++ GY+G PE+T T++ +TGD Y+ E+G
Sbjct: 335 ED-GTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENG 390
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 3e-20
Identities = 62/312 (19%), Positives = 101/312 (32%), Gaps = 39/312 (12%)
Query: 141 SNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYS 200
S + + A+L + + D T + A + +D A IMY+
Sbjct: 560 SAAACLLTHQEMKEQAAELPYTGTTLFI---DDQTRFEEQASDPATA-IDPNDPAYIMYT 615
Query: 201 SGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA-VMLFTMPY------FHIYGLFFCF 253
SGTTG+ KG + TH N+ V S L Y F Y
Sbjct: 616 SGTTGKPKGNITTHANIQGLVKHVDYM---AFSDQDTFLSVSNYAFDAFTFDFYA----- 667
Query: 254 RAAALMETA-VVM----QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSS 308
+++ A +++ D + + + + V T + ++ +
Sbjct: 668 ---SMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLT---DAGEDWMKG 721
Query: 309 LETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV-FRTVGPDECRRWGST-GR 366
L + G + L+ YG TE T V G+
Sbjct: 722 LRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGK 781
Query: 367 LSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD-----GWM- 420
+ I++ E P G GEL I G + KGYV ++T + + +
Sbjct: 782 PISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLY 840
Query: 421 RTGDLCYIDEDG 432
RTGDL DG
Sbjct: 841 RTGDLARWLPDG 852
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 91.8 bits (229), Expect = 4e-20
Identities = 54/260 (20%), Positives = 90/260 (34%), Gaps = 29/260 (11%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA--VMLFTMPY------ 243
D I+++SGTTG+ KGV ++H NL + + V ++ PY
Sbjct: 145 DDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQP-PYSFDLSV 203
Query: 244 FHIYGLFFCFRAAALMETA-VVM----QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKG 298
+ L + D K + + + V TP
Sbjct: 204 MYWAP--------TLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLS 255
Query: 299 GSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV-FRTVGPDE 357
+ +L L T +FP ++ AYG TE+T + + +
Sbjct: 256 DDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM 315
Query: 358 CRRWGST--GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLL 415
+ G I+D + G L G++GE+ + GP + KGY+ PE T+
Sbjct: 316 VDNYTRLPIGYPKPDSPTYIIDED-GKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFF 374
Query: 416 PD--GWM-RTGDLCYIDEDG 432
TGD+ + ED
Sbjct: 375 TFKGQPAYHTGDIGSLTEDN 394
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 2e-18
Identities = 64/306 (20%), Positives = 110/306 (35%), Gaps = 47/306 (15%)
Query: 141 SNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYS 200
S + +VH + ++ + F+ T+ L +D+A ++Y+
Sbjct: 135 SQARMLLTQKHLVHLIHNIQFNGQVEI---FEEDTIKIREGTNLHVP-SKSTDLAYVIYT 190
Query: 201 SGTTGRVKGVMLTHR---NLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAA- 256
SGTTG KG ML H+ NL +S + K + F F A+
Sbjct: 191 SGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDR---IGQFA-S--------ISFDASV 238
Query: 257 -----ALMETA-VVM----QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDL 306
AL+ A + + D + + + +T + P VV + D +
Sbjct: 239 WEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHL------DPERI 292
Query: 307 SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV-FRTVGPDECRRWGSTG 365
S++T+ + + + KV + AYG TE+T + G
Sbjct: 293 LSIQTLITAGSATSPSLVNKW---KEKVTYINAYGPTETTICATTWVATKETIGHSVPIG 349
Query: 366 RLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD-----GWM 420
+ IVD G+ GEL I G + +GY PE+TS + + +
Sbjct: 350 APIQNTQIYIVDEN-LQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKL 408
Query: 421 -RTGDL 425
+TGD
Sbjct: 409 YKTGDQ 414
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 8e-17
Identities = 60/262 (22%), Positives = 93/262 (35%), Gaps = 34/262 (12%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA-VMLFTMPY------FH 245
+A I +SSGTTGR K + TH +T +P L P
Sbjct: 165 QIAYINFSSGTTGRPKAIACTHAGITRLCLGQSFL---AFAPQMRFLVNSPLSFDAATLE 221
Query: 246 IYGLFFCFRAAALMETA-VVM---QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST 301
I+G AL+ V+ D ++ + + E A +T + +
Sbjct: 222 IWG--------ALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLV---DL 270
Query: 302 DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV-FRTVGPDECRR 360
D L L + G L + + P++ LV YG TE+T V D+
Sbjct: 271 DPDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEE 330
Query: 361 WGST-GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD-- 417
G+ AG ++D + P + GE+ G + +GY + T A+ +
Sbjct: 331 DDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPY 390
Query: 418 ----GWM-RTGDLCYIDEDGFL 434
RTGD DE G L
Sbjct: 391 RGRLLRAYRTGDRARYDEQGRL 412
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 1e-10
Identities = 70/294 (23%), Positives = 102/294 (34%), Gaps = 64/294 (21%)
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHR---NLTAAVASSFASSPKRVSPA-VMLFTMPYF 244
V Q ++ I SSGTTG+ V T VA S ++ + +
Sbjct: 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAG--ARRGDKVHVSYG-- 142
Query: 245 HIYGLF---FCFRAAALMETAVV--MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG 299
YGLF A V + ++ +++FR VTP +++++
Sbjct: 143 --YGLFTGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEI 200
Query: 300 STDGYDL--SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTA-GVFRTVGPD 356
G D SSL GA P D +A + + V YGL+E GV
Sbjct: 201 ERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYGLSEVMGPGVAS----- 254
Query: 357 ECRRWGSTGRLSAGLE-------AKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEV 409
EC G +I+DPETG+ LP G+ GEL V
Sbjct: 255 ECVETKD------GPTIWEDHFYPEIIDPETGEVLPDGELGEL-----------V----F 293
Query: 410 TSATLLPDGW----MRTGDLCYID-EDG-----FLFIVDRLKDLIKYKGYQVLP 453
T +L + RT DL + I R D++ +G V P
Sbjct: 294 T--SLTKEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFP 345
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 66/294 (22%), Positives = 98/294 (33%), Gaps = 64/294 (21%)
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHR---NLTAAVASSFASSPKRVSPA-VMLFTMPYF 244
V + V + SSGTTG+ V T R A S ++ P + Y
Sbjct: 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAG--GRPGDTLHNAFGY- 145
Query: 245 HIYGLF---FCFRAAALMETAVV--MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG 299
GLF A +V M + ++ + +F VTP ++ +
Sbjct: 146 ---GLFTGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEM 202
Query: 300 STDGYDL--SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE-STAGVFRTVGPD 356
G D SSL+ GA P + ++ + + YGL+E GV
Sbjct: 203 VRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYGLSEVMGPGVAC----- 256
Query: 357 ECRRWGSTGRLSAGLE-------AKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEV 409
EC G +I+DP TG+ LP G +GEL V
Sbjct: 257 ECVETKD------GPVIWEDHFYPEIIDPVTGEVLPDGSQGEL-----------V----F 295
Query: 410 TSATLLPDGW----MRTGDLCYID-EDG-----FLFIVDRLKDLIKYKGYQVLP 453
T +L + RT DL + I R D++ +G V P
Sbjct: 296 T--SLTKEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFP 347
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 6e-10
Identities = 63/295 (21%), Positives = 103/295 (34%), Gaps = 68/295 (23%)
Query: 191 QSDVAAIMYSSGTTGRVKGVMLTHR---NLTAAVASSFASSPKRVSPA-VMLFTMPYFHI 246
+ D I SSGTTG ++ + + VA + V + Y
Sbjct: 85 KRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVG--IRKTDVFQNSSGY--- 139
Query: 247 YGLF---FCFRAAALMETAVV--MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST 301
G+F F+ A + + K +K + +F+ T P + +++
Sbjct: 140 -GMFTGGLGFQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQE 198
Query: 302 DGYDL--SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE-STAGVFRTVGPDEC 358
+G D ++L+T+ GA P + V ++G+TE + GV EC
Sbjct: 199 EGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSFGMTEMNGPGVAF-----EC 252
Query: 359 RRWGSTGRLSAGLE-------AKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTS 411
+ G+ +I+DPETG+ +P G+ GEL V +T
Sbjct: 253 QE-------QNGMHFWEDCYLVEIIDPETGEPVPEGEIGEL-----------V----LT- 289
Query: 412 ATLLPDGW----MRTGDLCYIDEDG---------FLFIVDRLKDLIKYKGYQVLP 453
TL + RT DL I I R D+ KG + P
Sbjct: 290 -TLDREMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFP 343
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 2e-05
Identities = 67/460 (14%), Positives = 134/460 (29%), Gaps = 116/460 (25%)
Query: 9 FDTKSGFNSATKTFHSLRPPI--DLPPEDAPISAVDYVSSLRATLPWRD-DDTVALINSV 65
F+T + +D D ++ L + D + ++V
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQ----DM---PKSILSKEEIDHIIMSKDAV 61
Query: 66 TGLRVSFSEF-TRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISP 124
+G F +++ + +++ V R+ + F++S E P
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRI---NYKFLMSPIKTEQ-------------RQP 105
Query: 125 ANPVNTESEISRQIQLSNPVIAFATSSV--VHKLAKLKHRTILIDSPEFDSMTMSWNSKH 182
+ + T I ++ +L N FA +V + KL R L+
Sbjct: 106 S--MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL--RQALL---------------- 145
Query: 183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMP 242
EL AK +V ++ G G K + V S+ +
Sbjct: 146 ELRPAK----NV--LID--GVLGSGKTW------VALDVCLSYK-----------VQCKM 180
Query: 243 YFHIYGLFF--CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS 300
F I+ L C ++E ++Q+ ++ + + + + +
Sbjct: 181 DFKIFWLNLKNCNSPETVLE---MLQKLLYQIDPNWTSR---SDHSSNIKLRIHSIQAEL 234
Query: 301 TD-----GY--DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353
Y L L V AF ++ + +T+ + T
Sbjct: 235 RRLLKSKPYENCLLVLLNVQ------NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 354 GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSAT 413
+ T L K +D D LP E+ P + + E
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQD-LPR----EVLTTNPRRLSI-IAE------- 335
Query: 414 LLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
+ DG + +++ D+L +I+ VL
Sbjct: 336 SIRDGLATWDNWKHVN-------CDKLTTIIE-SSLNVLE 367
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 370 GLEAKIVDPETGDSLPPGKEGELSIRG--PTIMKGYVGEPEVTSATLLP--DGWMRTGDL 425
G++ +VD E G EG L I P + G+ E T +GD
Sbjct: 443 GVQPALVDNE-GHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDG 501
Query: 426 CYIDEDGFLFIVDRLKDLI 444
DEDG+ +I R+ D++
Sbjct: 502 ARRDEDGYYWITGRVDDVL 520
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 4e-05
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 370 GLEAKIVDPETGDSLPPGK-EGELSIRG--PTIMKGYVGEPEVTSATLLP--DGWMRTGD 424
G++A ++DP TG+ L EG L+++ P+ + + T L G+ TGD
Sbjct: 450 GIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGD 509
Query: 425 LCYIDEDGFLFIVDRLKDLI 444
D+DG+++I+ R+ D++
Sbjct: 510 GAAKDKDGYIWILGRVDDVV 529
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 456 | |||
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 100.0 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 100.0 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 98.87 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 98.76 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 98.65 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 93.77 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 93.23 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 93.09 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 86.1 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 84.91 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 81.53 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 80.51 |
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-72 Score=568.28 Aligned_cols=428 Identities=34% Similarity=0.546 Sum_probs=372.7
Q ss_pred CceeeCCCCCCCCCCCCCCCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEE
Q 012774 19 TKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTA 98 (456)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V 98 (456)
..+|++..++.+.|. .+|+++++.++++++ |+++|+++..+++++||+||.++++++|+.|++ .|+++||+|
T Consensus 6 ~~i~~~~~~~~~~p~---~~~l~~~l~~~a~~~----p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V 77 (536)
T 3ni2_A 6 EFIFRSKLPDIYIPK---NLPLHSYVLENLSNH----SSKPCLINGANGDVYTYADVELTARRVASGLNK-IGIQQGDVI 77 (536)
T ss_dssp CCCBCCSSCCCCCCS---SCCHHHHHTTTGGGS----TTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEE
T ss_pred ceEEecCCCCCCCCC---CCcHHHHHHHHhhcC----CCceEEEECCCCCEEEHHHHHHHHHHHHHHHHH-cCCCCCCEE
Confidence 346677777776664 379999999999999 999999997667899999999999999999999 899999999
Q ss_pred EEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhc----cCCeEEEEcCC-----
Q 012774 99 FVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----LKHRTILIDSP----- 169 (456)
Q Consensus 99 ~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~----~~~~~~~~~~~----- 169 (456)
+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.....+.. ...+++.++..
T Consensus 78 ~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (536)
T 3ni2_A 78 MLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCL 157 (536)
T ss_dssp EEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCCTTCE
T ss_pred EEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999876655442 24555555432
Q ss_pred chhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCC---CCCCCCcEEEEecchhhH
Q 012774 170 EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS---PKRVSPAVMLFTMPYFHI 246 (456)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~ 246 (456)
.+.++..... .........++++++++|||||||.||+|+++|+++.+.+....... .....++++++.+|++|.
T Consensus 158 ~~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~ 235 (536)
T 3ni2_A 158 HFSELTQADE--NEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHI 235 (536)
T ss_dssp ETHHHHTSCG--GGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSH
T ss_pred CHHHHhhccc--cccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHH
Confidence 1333322211 11223345779999999999999999999999999988876654321 156789999999999999
Q ss_pred hhH-HHHHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHH
Q 012774 247 YGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIM 325 (456)
Q Consensus 247 ~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~ 325 (456)
+++ ..++.++..|+++++.+.+++..+++.|+++++|++.++|+++..+++.......+++++|.+++||+++++++.+
T Consensus 236 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~ 315 (536)
T 3ni2_A 236 YALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELED 315 (536)
T ss_dssp HHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHH
Confidence 998 5578899999999999999999999999999999999999999999998776777899999999999999999999
Q ss_pred HHHHhCCCCceEeccCcccccccccccc---CCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccc
Q 012774 326 AFASKFPKVVLVQAYGLTESTAGVFRTV---GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402 (456)
Q Consensus 326 ~~~~~~~~~~i~~~yG~tE~~~~~~~~~---~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~g 402 (456)
++++.+|++++++.||+||++.+++.+. ........+++|+|+++++++|+|++++++++.|+.|||+|+|++++.|
T Consensus 316 ~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~G 395 (536)
T 3ni2_A 316 TVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKG 395 (536)
T ss_dssp HHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSE
T ss_pred HHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchh
Confidence 9999999999999999999987655432 1223345688999999999999998889999999999999999999999
Q ss_pred cCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 403 YVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 403 y~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|+++++.|.+.|+.+|||+|||+|++|+||+++|.||+||+||++|++|+|.||
T Consensus 396 Y~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eI 449 (536)
T 3ni2_A 396 YLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAEL 449 (536)
T ss_dssp ETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHH
T ss_pred hcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHH
Confidence 999999999999889999999999999999999999999999999999999764
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-71 Score=562.39 Aligned_cols=427 Identities=30% Similarity=0.490 Sum_probs=345.1
Q ss_pred CceeeCCCCCCCCCCCCCCCCHHHHhhhcccCCCCCCCCCcEEE---ECCCCceecHHHHHHHHHHHHHHhHhhcCCCCC
Q 012774 19 TKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALI---NSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKN 95 (456)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~A~~---~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~g 95 (456)
..++.++.+..+.+. .|+.++|.++++++ |+++|++ +...++++||+||.++++++|+.|++ .|+++|
T Consensus 5 ~~~~~~~~~~~~~~~----~tl~~~l~~~a~~~----p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~g 75 (550)
T 3rix_A 5 KNIKKGPAPFYPLED----GTAGEQLHKAMKRY----ALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-YGLNTN 75 (550)
T ss_dssp GGSEECCCCSSCCCC----SCHHHHHHHHHHHH----HTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-HTCCTT
T ss_pred cceeeCCCCCCCccc----CCHHHHHHHHHHhC----CCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHH-hCCCCC
Confidence 456777777777776 89999999999999 9998875 55457899999999999999999999 899999
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc------CCeEEEEcCC
Q 012774 96 DTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KHRTILIDSP 169 (456)
Q Consensus 96 d~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~------~~~~~~~~~~ 169 (456)
|+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++++....+... ...++.++..
T Consensus 76 d~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (550)
T 3rix_A 76 HRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSK 155 (550)
T ss_dssp CEEEEECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCS
T ss_pred CEEEEEcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCC
Confidence 9999999999999999999999999999999999999999999999999999998876655421 1233433321
Q ss_pred -------chhhhhcccCCC----cc-ccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCC--CCCCCCc
Q 012774 170 -------EFDSMTMSWNSK----HE-LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPA 235 (456)
Q Consensus 170 -------~~~~~~~~~~~~----~~-~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~--~~~~~~~ 235 (456)
.+.++....... .. .......++++++++|||||||.||+|+++|+++...+....... ....+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~ 235 (550)
T 3rix_A 156 TDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDT 235 (550)
T ss_dssp SCBTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTC
T ss_pred ccccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCc
Confidence 122222211110 01 111122457899999999999999999999999998887766552 2567899
Q ss_pred EEEEecchhhHhhHHHHHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEec
Q 012774 236 VMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACG 315 (456)
Q Consensus 236 ~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~g 315 (456)
++++.+|++|.+++...+.++..|+++++.+.+++..+++.|+++++|+++++|+++..|++.......+++++|.+++|
T Consensus 236 ~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~g 315 (550)
T 3rix_A 236 AILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASG 315 (550)
T ss_dssp EEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEEC
T ss_pred EEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEe
Confidence 99999999999999888899999999999999999999999999999999999999999999877667789999999999
Q ss_pred CCCCCHHHHHHHHHhCCCCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEe
Q 012774 316 AAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR 395 (456)
Q Consensus 316 G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~ 395 (456)
|+++++++.+++.+.++...+++.||+||++..++... ......+++|+|+++++++|+|+++++++++|+.|||+|+
T Consensus 316 G~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~--~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~ 393 (550)
T 3rix_A 316 GAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITP--EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR 393 (550)
T ss_dssp SSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECC--TTCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEE
T ss_pred cCCCCHHHHHHHHHHcCCCccccccCcCccccceecCC--CCCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEe
Confidence 99999999999999995456999999999988766533 2334668999999999999999888999999999999999
Q ss_pred cCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 396 GPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 396 g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|++++.||+++++.|.+.|+.+|||+|||+|++|+||+++|.||.||+||++|++|+|.||
T Consensus 394 g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eI 454 (550)
T 3rix_A 394 GPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAEL 454 (550)
T ss_dssp STTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-------------------
T ss_pred CCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHH
Confidence 9999999999999999999889999999999999999999999999999999999999986
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-70 Score=550.36 Aligned_cols=423 Identities=31% Similarity=0.475 Sum_probs=360.3
Q ss_pred ceeeCCCCCCCCCCCCCCCCHHH-HhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEE
Q 012774 20 KTFHSLRPPIDLPPEDAPISAVD-YVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTA 98 (456)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V 98 (456)
|.|+++.+..+.|. .+|+.+ ++.++++++ +++|+++...++++||+||.++++++|+.|++ .|+++||+|
T Consensus 10 ~~~~~~~~~~~~p~---~~~l~~~~l~~~~~~~-----~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V 80 (548)
T 2d1s_A 10 IVVGPKPFYPIEEG---SAGTQLRKYMERYAKL-----GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQN-YGLVVDGRI 80 (548)
T ss_dssp SEECCCCSSCCCSS---CHHHHHHHHHHHHHHH-----TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-HTCCTTCEE
T ss_pred eEecCCCCCCCCCC---cCcHHHHHHHhhhccc-----CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHH-cCCCCCCEE
Confidence 56777666555543 258999 888877643 78999985447899999999999999999998 899999999
Q ss_pred EEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhc----c--CCeEEEEcCC---
Q 012774 99 FVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----L--KHRTILIDSP--- 169 (456)
Q Consensus 99 ~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~----~--~~~~~~~~~~--- 169 (456)
+|+++|+++++++++||+++|++++|+++.++.+++.+++++++++++|+++.....+.. . ...++.++..
T Consensus 81 ~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (548)
T 2d1s_A 81 ALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDY 160 (548)
T ss_dssp EEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCB
T ss_pred EEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccc
Confidence 999999999999999999999999999999999999999999999999999877665432 1 2344444432
Q ss_pred ----chhhhhcccCCCccccccCC------CCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccC---CCCCCCCcE
Q 012774 170 ----EFDSMTMSWNSKHELDRAKV------CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFAS---SPKRVSPAV 236 (456)
Q Consensus 170 ----~~~~~~~~~~~~~~~~~~~~------~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~---~~~~~~~~~ 236 (456)
.+.++....... ....... .++++++++|||||||.||+|+++|+++.+.+...... + +..++++
T Consensus 161 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~-~~~~~d~ 238 (548)
T 2d1s_A 161 RGYQCLDTFIKRNTPP-GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGN-QVSPGTA 238 (548)
T ss_dssp TTBCBHHHHHHHTSCT-TCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSC-CCCTTCE
T ss_pred cccccHHHHHhcCccc-cCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhcc-CCCccce
Confidence 244443322111 0111111 23899999999999999999999999999888776665 4 5678999
Q ss_pred EEEecchhhHhhHHH-HHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEec
Q 012774 237 MLFTMPYFHIYGLFF-CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACG 315 (456)
Q Consensus 237 ~~~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~g 315 (456)
+++.+|++|.+++.. ++.++ .|+++++.+.+++..+++.|+++++|+++++|+++..|.+.......+++++|.+++|
T Consensus 239 ~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~g 317 (548)
T 2d1s_A 239 VLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASG 317 (548)
T ss_dssp EEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEEC
T ss_pred EEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEc
Confidence 999999999999865 55666 9999999999999999999999999999999999999998766556678999999999
Q ss_pred CCCCCHHHHHHHHHhCCCCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEe
Q 012774 316 AAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR 395 (456)
Q Consensus 316 G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~ 395 (456)
|+++++++.+++.+.+++.++++.||+||++..++.. .....+.+++|+|+++++++|+|+++++++++|+.|||+|+
T Consensus 318 G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~--~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~ 395 (548)
T 2d1s_A 318 GAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT--PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK 395 (548)
T ss_dssp SSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEEC--CTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEE
T ss_pred CccCCHHHHHHHHHHcCCCceeeccccccccceeeec--CcccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEEC
Confidence 9999999999999999889999999999998776552 22234568999999999999999888999999999999999
Q ss_pred cCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 396 GPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 396 g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|+.++.||+++++.|.+.|+.+|||+|||+|++|+||+++|.||.||+||++|++|+|.|+
T Consensus 396 g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eI 456 (548)
T 2d1s_A 396 GPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAEL 456 (548)
T ss_dssp STTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHH
T ss_pred CHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHH
Confidence 9999999999999999999889999999999999999999999999999999999999764
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-70 Score=552.78 Aligned_cols=421 Identities=27% Similarity=0.389 Sum_probs=347.9
Q ss_pred eCCCCCCCCCCCCCCCCHHHHhhhcccCCCCCCCCCcEEEECCC------CceecHHHHHHHHHHHHHHhHhhcCCCCCC
Q 012774 23 HSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVT------GLRVSFSEFTRRTNSLASYLQNVTRLSKND 96 (456)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~------~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd 96 (456)
+...|+...|. +|+.++|.++++++ |+++|+++.+. .+++||+||.++++++|+.|.+ .|+++||
T Consensus 8 ~~~~p~~~~~~----~~l~~~l~~~a~~~----p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd 78 (549)
T 3g7s_A 8 KIGFPSLYYPK----ISLADRIDAAAEKF----GEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISR-KGVRKGE 78 (549)
T ss_dssp CCCCCCCCCCC----CCTTHHHHHHHHHH----TTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHH-TTCCTTC
T ss_pred ccCCCCCCcCC----CCHHHHHHHHHHhC----CCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHH-cCCCCCC
Confidence 34444444554 89999999999999 99999998732 1899999999999999999998 8999999
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhc----cCCe-EEEEc--CC
Q 012774 97 TAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----LKHR-TILID--SP 169 (456)
Q Consensus 97 ~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~----~~~~-~~~~~--~~ 169 (456)
+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.....+.. .... +++.+ ..
T Consensus 79 ~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (549)
T 3g7s_A 79 HVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEVN 158 (549)
T ss_dssp EEEEECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETCSSS
T ss_pred EEEEECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCCCCc
Confidence 99999999999999999999999999999999999999999999999999999887765542 2233 33333 22
Q ss_pred chhhhhcccCCCccccccCCC-CCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhh
Q 012774 170 EFDSMTMSWNSKHELDRAKVC-QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYG 248 (456)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~-~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g 248 (456)
.+.++...... ........ ++++++++|||||||.||+|+++|+++.+.+......+ +..+.+++++.+|++|.++
T Consensus 159 ~~~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~~ 235 (549)
T 3g7s_A 159 SLSEVMDSGSE--DFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-GLSHMDTIVGCMPMFHSAE 235 (549)
T ss_dssp CHHHHHHHSCS--CCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-CCCTTCEEECCSCTTSHHH
T ss_pred CHHHHHhcCcc--ccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-CCCCCCEEEEeCcHHHHHH
Confidence 34444333221 11122233 38999999999999999999999999999888777766 6789999999999999999
Q ss_pred HHHHHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCC--CCCCCceEEEecCCCCCHHHHHH
Q 012774 249 LFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDG--YDLSSLETVACGAAPLGKDTIMA 326 (456)
Q Consensus 249 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~l~~lr~v~~gG~~~~~~~~~~ 326 (456)
+..++.++..|+++++.+.+++..+++.|+++++|+++++|+++..|++...... .+++++|.+++||+++++++.++
T Consensus 236 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~ 315 (549)
T 3g7s_A 236 FGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEK 315 (549)
T ss_dssp HHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHH
T ss_pred HHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHH
Confidence 9778889999999999999999999999999999999999999999987643332 56899999999999999999999
Q ss_pred HHHh----C--CCCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcc
Q 012774 327 FASK----F--PKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIM 400 (456)
Q Consensus 327 ~~~~----~--~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~ 400 (456)
+.+. + |++++++.||+||++.+++.... .......++|+|+++++++|+|++++++++.|+.|||+|+|+.++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~-~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~ 394 (549)
T 3g7s_A 316 LLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPP-LRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIF 394 (549)
T ss_dssp HHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCG-GGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSC
T ss_pred HHHHHHhhcCCccccccceEeccccchhhhcCCc-cccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchh
Confidence 9987 5 34899999999999887665332 222456889999999999999988999999999999999999999
Q ss_pred cccCCCccccccccC--CCC--eeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 401 KGYVGEPEVTSATLL--PDG--WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 401 ~gy~~~~~~~~~~~~--~~g--~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
.||+++++.+++.|. .+| ||+|||+|++|+||+|+|.||.||+||++|++|+|.||
T Consensus 395 ~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eI 454 (549)
T 3g7s_A 395 KGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFEL 454 (549)
T ss_dssp SEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHH
T ss_pred hhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHH
Confidence 999999999999884 567 99999999999999999999999999999999999874
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-69 Score=540.29 Aligned_cols=404 Identities=27% Similarity=0.408 Sum_probs=345.5
Q ss_pred HHhhhcccCCCCCCCCCcEEEE-CCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCC
Q 012774 42 DYVSSLRATLPWRDDDTVALIN-SVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV 120 (456)
Q Consensus 42 ~~l~~~~~~~~~~~p~~~A~~~-~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~~G~ 120 (456)
+++.+.++++ |+++|+.. ...++++||+||.++++++|+.|++ .|+++||+|+++++|++++++++|||+++|+
T Consensus 4 ~l~~~~a~~~----p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga 78 (503)
T 4fuq_A 4 NLFARLFDKL----DDPHKLAIETAAGDKISYAELVARAGRVANVLVA-RGLQVGDRVAAQTEKSVEALVLYLATVRAGG 78 (503)
T ss_dssp CHHHHHHSCC----SCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHhC----CCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHcCc
Confidence 4667778888 88888763 1237899999999999999999999 8999999999999999999999999999999
Q ss_pred eEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHh----ccCCeEEEEcCCchhhhhcc-cCCCccccccCCCCCCEE
Q 012774 121 IISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLA----KLKHRTILIDSPEFDSMTMS-WNSKHELDRAKVCQSDVA 195 (456)
Q Consensus 121 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a 195 (456)
+++|+++.++.+++.+++++++++++|+++.....+. .....+..++......+... .............+++++
T Consensus 79 ~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a 158 (503)
T 4fuq_A 79 VYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLA 158 (503)
T ss_dssp EEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSCSHHHHHHHTSCSCCCCCCCCTTSEE
T ss_pred EEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCcccccchhhhcCCCCcCcCCCCCCCeE
Confidence 9999999999999999999999999999876543222 22334444432221111100 001112223345679999
Q ss_pred EEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhH-HHHHHHhHhcceEEEecCCCHHHHH
Q 012774 196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMML 274 (456)
Q Consensus 196 ~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~ 274 (456)
+++|||||||.||+|+++|+++.+........+ ...+++++++.+|++|.+++ ...+.++..|+++++.+.++++.++
T Consensus 159 ~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~ 237 (503)
T 4fuq_A 159 AILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-RFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKIL 237 (503)
T ss_dssp EEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHH
T ss_pred EEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHH
Confidence 999999999999999999999999888877777 78899999999999999997 5577889999999999999999999
Q ss_pred HHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccC
Q 012774 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (456)
Q Consensus 275 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~ 354 (456)
+.++ ++|+++++|+++..+++........++++|.+++||+++++++.+.|.+.+ +.++++.||+||++..... .
T Consensus 238 ~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~--~ 312 (503)
T 4fuq_A 238 DLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTSN--P 312 (503)
T ss_dssp HHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTTEECBCC--C
T ss_pred HHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceEcccccCccccc--C
Confidence 9998 899999999999999998777777789999999999999999999999988 8899999999999876543 2
Q ss_pred CCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCCcE
Q 012774 355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFL 434 (456)
Q Consensus 355 ~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l 434 (456)
.......+++|+|+++++++|+|++++++++.|+.|||+|+|++++.||+++++.+.+.|..+|||+|||+|++|+||++
T Consensus 313 ~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l 392 (503)
T 4fuq_A 313 YDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYV 392 (503)
T ss_dssp SSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEE
T ss_pred CCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcE
Confidence 23344568899999999999999889999999999999999999999999999999999988999999999999999999
Q ss_pred EEecccccceeeCCeeecCCCC
Q 012774 435 FIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 435 ~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+|.||.||+||++|++|+|.||
T Consensus 393 ~~~GR~dd~ik~~G~~v~p~eI 414 (503)
T 4fuq_A 393 HILGRGKDLVITGGFNVYPKEI 414 (503)
T ss_dssp EECCSSTTCEEETTEEECHHHH
T ss_pred EEEecCCCEEEECCEEECHHHH
Confidence 9999999999999999999764
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-69 Score=577.13 Aligned_cols=437 Identities=36% Similarity=0.552 Sum_probs=359.0
Q ss_pred CCCCCCCCceeeCCCCCCCCCCCCCCCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcC
Q 012774 12 KSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTR 91 (456)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~g 91 (456)
.+..+.....|++..++.+.|. .+|++++|.++++++ |+++|+++..+++++||+||.++++++|+.|++ .|
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~p~---~~tl~~~l~~~a~~~----pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~-~G 109 (979)
T 3tsy_A 38 QSNNNNSDVIFRSKLPDIYIPN---HLSLHDYIFQNISEF----ATKPCLINGPTGHVYTYSDVHVISRQIAANFHK-LG 109 (979)
T ss_dssp -------CCCBCCSSCCCCCCT---TSCHHHHHTTTGGGT----TTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-TT
T ss_pred cccCCCCCceeecCCCCCCCCC---CCCHHHHHHHHHHhC----CCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHH-cC
Confidence 3444555667777777766653 379999999999999 999999997667899999999999999999999 89
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHh----ccCCeEEEEc
Q 012774 92 LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLA----KLKHRTILID 167 (456)
Q Consensus 92 i~~gd~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~----~~~~~~~~~~ 167 (456)
+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++...+.+. .....++.++
T Consensus 110 v~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 189 (979)
T 3tsy_A 110 VNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCID 189 (979)
T ss_dssp CCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECC
T ss_pred CCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeC
Confidence 999999999999999999999999999999999999999999999999999999999977654432 2244455544
Q ss_pred CC----------chhhhhcccCC-CccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCC---CCCCC
Q 012774 168 SP----------EFDSMTMSWNS-KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS---PKRVS 233 (456)
Q Consensus 168 ~~----------~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~---~~~~~ 233 (456)
.. .+.++...... ..........++++++++|||||||.||+|+++|+++.+.+....... ....+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~ 269 (979)
T 3tsy_A 190 DNESVPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHS 269 (979)
T ss_dssp CCTTSCCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCS
T ss_pred CcccccCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCC
Confidence 32 12222221110 001222345779999999999999999999999999998877654322 14678
Q ss_pred CcEEEEecchhhHhhH-HHHHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEE
Q 012774 234 PAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETV 312 (456)
Q Consensus 234 ~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v 312 (456)
++++++.+|++|.+++ ..++.++..|+++++.+.+++..+++.|+++++|++.++|+++..|.+.......+++++|.+
T Consensus 270 ~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~ 349 (979)
T 3tsy_A 270 DDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVV 349 (979)
T ss_dssp SCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEE
T ss_pred CCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEE
Confidence 9999999999999998 557888999999999999999999999999999999999999999999877677789999999
Q ss_pred EecCCCCCHHHHHHHHHhCCCCceEeccCcccccccccccc---CCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCc
Q 012774 313 ACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV---GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKE 389 (456)
Q Consensus 313 ~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~---~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~ 389 (456)
++||+++++++.+++++.+|++++++.||+||++.+++... ........+++|+|+++++++|+|+++++++++|+.
T Consensus 350 ~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~ 429 (979)
T 3tsy_A 350 KSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQP 429 (979)
T ss_dssp EESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCC
T ss_pred EEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCc
Confidence 99999999999999999999999999999999987655432 122334567899999999999999888999999999
Q ss_pred ceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 390 GELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 390 Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|||+|+|+.+++||+++|+.|.+.|+.+|||+|||+|++|+||+|+|+||.||+||++|++|+|.||
T Consensus 430 GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eI 496 (979)
T 3tsy_A 430 GEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAEL 496 (979)
T ss_dssp EEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC--------------
T ss_pred cEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHH
Confidence 9999999999999999999999999889999999999999999999999999999999999999986
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-70 Score=547.91 Aligned_cols=406 Identities=24% Similarity=0.316 Sum_probs=347.3
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.|+.++|.++++++ |+++|+++. ++++||+||.++++++|+.|++ .|+++||+|+++++|++++++++|||++
T Consensus 25 ~tl~~~l~~~a~~~----p~~~A~~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 97 (539)
T 1mdb_A 25 ETFGDLLRDRAAKY----GDRIAITCG--NTHWSYRELDTRADRLAAGFQK-LGIQQKDRVVVQLPNIKEFFEVIFALFR 97 (539)
T ss_dssp CCHHHHHHHHHHHH----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHC----CCCEEEEeC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 69999999999999 999999997 7899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccch--------HHHHh-cc-CCe-EEEEcC-CchhhhhcccCCCcccc
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSV--------VHKLA-KL-KHR-TILIDS-PEFDSMTMSWNSKHELD 185 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~--------~~~~~-~~-~~~-~~~~~~-~~~~~~~~~~~~~~~~~ 185 (456)
+|++++|+++.++.+++.+++++++++++|+++.. ...+. .. ..+ +++.+. ..+.++...... ...
T Consensus 98 ~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 175 (539)
T 1mdb_A 98 LGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTE--PVK 175 (539)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGGGCCCC--CCC
T ss_pred cCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccchhhhhhcccc--ccc
Confidence 99999999999999999999999999999998753 12221 11 122 333332 123222221110 111
Q ss_pred ccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHH--HHHHHhHhcceEE
Q 012774 186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF--FCFRAAALMETAV 263 (456)
Q Consensus 186 ~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~--~~~~~l~~G~~~~ 263 (456)
.....++++++++|||||||.||+|+++|+++.+.+......+ +..+++++++.+|++|.+++. .++.++..|++++
T Consensus 176 ~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 176 LPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-WLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred cCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 2345678999999999999999999999999998887776666 678899999999999999985 5889999999999
Q ss_pred EecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCcc
Q 012774 264 VMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLT 343 (456)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~t 343 (456)
+.+.+++..+++.|+++++|+++++|+++..+++.......+++++|.+++||+++++++.+++++.+ ++++++.||+|
T Consensus 255 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~T 333 (539)
T 1mdb_A 255 LSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMA 333 (539)
T ss_dssp ECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECT
T ss_pred ECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHh-CCcEEEEEcCC
Confidence 99999999999999999999999999999999876544556789999999999999999999999988 89999999999
Q ss_pred ccccccccccCCCCCCCCCccccccCCc-EEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeec
Q 012774 344 ESTAGVFRTVGPDECRRWGSTGRLSAGL-EAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRT 422 (456)
Q Consensus 344 E~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~T 422 (456)
|++..+.. .........+++|+|+++. +++|+| +++++++.|+.|||+|+|++++.||+++++.|.+.|..+|||+|
T Consensus 334 E~~~~~~~-~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~T 411 (539)
T 1mdb_A 334 EGLVNYTR-LDDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRT 411 (539)
T ss_dssp TSCEEECC-TTSCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEE
T ss_pred CCcccccC-CCCcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeec
Confidence 96543322 1111112346899999765 899999 78999999999999999999999999999999999988999999
Q ss_pred cceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 423 GDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 423 GDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
||+|++|+||+|+|.||+||+||++|++|+|.||
T Consensus 412 GDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eI 445 (539)
T 1mdb_A 412 GDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEV 445 (539)
T ss_dssp EEEEEECTTSCEEEEEEGGGCEECSSCEECHHHH
T ss_pred CceEEECCCCcEEEeccccceEEECCEEECHHHH
Confidence 9999999999999999999999999999999764
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-70 Score=544.31 Aligned_cols=407 Identities=26% Similarity=0.361 Sum_probs=350.3
Q ss_pred CCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
..|+.++|.++++++ |+++|+++.+.+.++||+||.++++++|+.|.+ .|+++||+|+++++|++++++++|||+
T Consensus 15 ~~~l~~~l~~~a~~~----p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 89 (517)
T 3r44_A 15 MKNIGWMLRQRATVS----PRLQAYVEPSTDVRMTYAQMNALANRCADVLTA-LGIAKGDRVALLMPNSVEFCCLFYGAA 89 (517)
T ss_dssp GGCHHHHHHHHHHHS----TTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhC----CCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHH-cCCCCcCEEEEEcCCCHHHHHHHHHHH
Confidence 479999999999999 999999998444599999999999999999999 899999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc----C--CeEE-EEcCCchhhhhcccCCCccccccCC
Q 012774 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----K--HRTI-LIDSPEFDSMTMSWNSKHELDRAKV 189 (456)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (456)
++|++++|+++.++.+++.+++++++++++|+++.....+... . ..++ ......+.+....... .......
T Consensus 90 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 167 (517)
T 3r44_A 90 KLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAA--DEPAVEC 167 (517)
T ss_dssp HHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEEHHHHHHHHHHCCC--CCCCCCC
T ss_pred HhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccCcccHHHHhhccCc--CCCCCCC
Confidence 9999999999999999999999999999999998776654321 1 1111 1111122222222111 2223345
Q ss_pred CCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecCCC
Q 012774 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFD 269 (456)
Q Consensus 190 ~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~ 269 (456)
.++++++++|||||||.||+|+++|+++.+.+......+ +...++++++.+|++|.+++...+.++..|+++++.+.++
T Consensus 168 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~~ 246 (517)
T 3r44_A 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-DVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFD 246 (517)
T ss_dssp CTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-CCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCC
T ss_pred CCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-CCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeCCCC
Confidence 779999999999999999999999999999988877777 7889999999999999999977666666999999999999
Q ss_pred HHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCcccccccc
Q 012774 270 LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV 349 (456)
Q Consensus 270 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~ 349 (456)
+..+++.|+++++|++.++|+++..|.+.......+++++|.+++||+++++++.+.+.+. ++++++.||+||++..+
T Consensus 247 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~YG~TE~~~~~ 324 (517)
T 3r44_A 247 ATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGGG 324 (517)
T ss_dssp HHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGTTCE
T ss_pred HHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEEEeecccccccce
Confidence 9999999999999999999999999988765555678899999999999999999999987 89999999999998776
Q ss_pred ccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEc
Q 012774 350 FRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYID 429 (456)
Q Consensus 350 ~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~ 429 (456)
+.....+.....+++|+|+++++++|+| +++..++.| .|||+|+|+.++.||+++|+.+.+.| .+|||+|||+|++|
T Consensus 325 ~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~ 401 (517)
T 3r44_A 325 TLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEID 401 (517)
T ss_dssp EEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEEC
T ss_pred eecCCccccccCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEc
Confidence 6544333345678999999999999999 778888888 89999999999999999999999999 68999999999999
Q ss_pred cCCcEEEecccccceeeCCeeecCCCC
Q 012774 430 EDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 430 ~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+||+++|.||.||+||++|++|+|.||
T Consensus 402 ~dG~l~~~GR~dd~ik~~G~~v~p~eI 428 (517)
T 3r44_A 402 DEGYLYIKDRLKDMIISGGENVYPAEI 428 (517)
T ss_dssp TTSCEEEEECGGGCEEETTEEECHHHH
T ss_pred CCeeEEEecCCcCEEEECCEEECHHHH
Confidence 999999999999999999999999764
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-69 Score=545.98 Aligned_cols=407 Identities=22% Similarity=0.272 Sum_probs=336.7
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.|+.++|.++++++ |+++|+++. ++++||+||.++++++|+.|++ .|+++||+|+|+++|++++++++|||++
T Consensus 30 ~tl~~~l~~~a~~~----p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~ 102 (544)
T 3o83_A 30 QPLTRILTVGVQSH----PHSLAIICG--ERQLSYIELDRLSTNLATRLAE-KGLGKGDTALVQLPNVAEFYIVFFALLK 102 (544)
T ss_dssp CCTTHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC----CCceEEEcC--CCceeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 69999999999999 999999998 8899999999999999999999 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchH--------HHHhcc--CC-eEEEEcCC----chhhhhcccCCCc
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--------HKLAKL--KH-RTILIDSP----EFDSMTMSWNSKH 182 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--------~~~~~~--~~-~~~~~~~~----~~~~~~~~~~~~~ 182 (456)
+|++++|+++.++.+++.+++++++++++|+++... ..+... .. .++..+.. .+.++..... ..
T Consensus 103 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 181 (544)
T 3o83_A 103 AGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPA-ET 181 (544)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTSEEHHHHHHSCC-SS
T ss_pred hCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccccchhhhhhccc-cc
Confidence 999999999999999999999999999999987542 222211 12 23333322 1222222111 11
Q ss_pred cccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHH--HHHHHhHhcc
Q 012774 183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF--FCFRAAALME 260 (456)
Q Consensus 183 ~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~--~~~~~l~~G~ 260 (456)
........++++++++|||||||.||+|+++|+++...+......+ +..+++++++.+|++|.+++. .++.++..|+
T Consensus 182 ~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~ 260 (544)
T 3o83_A 182 FVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-GLNSNTRLLCALPAPHNFMLSSPGALGVLHAGG 260 (544)
T ss_dssp CCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTC
T ss_pred ccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-CCCCCCeEEEecCcceEeecchHHHHHHHHcCC
Confidence 1112345678999999999999999999999999999988887777 788999999999999999884 5889999999
Q ss_pred eEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEecc
Q 012774 261 TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAY 340 (456)
Q Consensus 261 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~y 340 (456)
++++.+.+++..+++.|+++++|+++++|+++..+++.......+++++|.+++||+++++++.+++.+.+ ++++++.|
T Consensus 261 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~Y 339 (544)
T 3o83_A 261 CVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQVF 339 (544)
T ss_dssp EEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEeee
Confidence 99999999999999999999999999999999999887655556688999999999999999999999998 89999999
Q ss_pred CccccccccccccCCCCCCCCCcccccc-CCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCe
Q 012774 341 GLTESTAGVFRTVGPDECRRWGSTGRLS-AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGW 419 (456)
Q Consensus 341 G~tE~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~ 419 (456)
|+||++..+... .........++|+|+ ++.+++|+| ++++++++|+.|||+|+|++++.||+++++.+.+.|+.+||
T Consensus 340 G~TE~~~~~~~~-~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~ 417 (544)
T 3o83_A 340 GMAEGLVNYTRL-DDSDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNY 417 (544)
T ss_dssp ECTTSCEEECCT-TSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCC
T ss_pred ccccccceeecC-CCchhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCC
Confidence 999987554432 112222346899996 899999999 88999999999999999999999999999999999988999
Q ss_pred eeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 420 MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 420 ~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|+|||+|++|+||+++|.||.||+||++|++|+|.||
T Consensus 418 ~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eI 454 (544)
T 3o83_A 418 YYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEI 454 (544)
T ss_dssp EEEEEEEEECTTSCEEEEEEEC---------------
T ss_pred eEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHH
Confidence 9999999999999999999999999999999999986
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-69 Score=549.07 Aligned_cols=397 Identities=19% Similarity=0.165 Sum_probs=339.6
Q ss_pred CCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
..|+.++|.++++++ |+++|+++. ++++||+||.++++++|+.|++ .|+++||+|+++++|++++++++|||+
T Consensus 26 ~~tl~~~~~~~a~~~----Pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~g~~V~i~~~~s~~~vva~lail 98 (620)
T 4dg8_A 26 HPTVVARFSEMAALH----PHREAIRDR--FGSVDYRQLLDSAEQLSDYLLE-HYPQPGVCLGVYGEYSRESITCLLAIL 98 (620)
T ss_dssp SCCHHHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HCCSSCCEEEEESSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCeEEEcC--CCcCcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 369999999999999 999999998 8899999999999999999999 899999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccCCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEE
Q 012774 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (456)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 196 (456)
++|++++|++|.++.+++.+++++++++++++++....... ......+ ... .............++++++
T Consensus 99 kaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~--~~~~~~~-----~~~---~~~~~~~~~~~~~~~d~a~ 168 (620)
T 4dg8_A 99 LSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN--GLPCVPV-----RHL---PAAPASVARPCFAADQIAY 168 (620)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT--TSCEEEG-----GGC---CCCCCCSSCCCCCTTSEEE
T ss_pred HhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc--CCceeee-----ccC---CcCCccccCCCCCCCCeEE
Confidence 99999999999999999999999999999997654322111 1111111 110 0001112223346799999
Q ss_pred EEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEec--CCCHHHHH
Q 012774 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ--RFDLKMML 274 (456)
Q Consensus 197 i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~--~~~~~~~~ 274 (456)
++|||||||.||+|+++|+++.+.+.. ...+ ...+++++++.+|++|..++..++.++..|+++++.+ .+++..++
T Consensus 169 iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~ 246 (620)
T 4dg8_A 169 INFSSGTTGRPKAIACTHAGITRLCLG-QSFL-AFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLR 246 (620)
T ss_dssp EEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-TTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHH
T ss_pred EEECCCccccCeEEEEchHHHHHHHHH-HHhh-CCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHH
Confidence 999999999999999999999876654 3333 6788999999999999999988999999999999964 57999999
Q ss_pred HHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccC
Q 012774 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (456)
Q Consensus 275 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~ 354 (456)
+.|+++++|+++++|+++..|.+.. ...++++|.+++|||+++++..+++.+.++++++++.||+||++.+++....
T Consensus 247 ~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~ 323 (620)
T 4dg8_A 247 QLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVV 323 (620)
T ss_dssp HHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEEC
T ss_pred HHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEec
Confidence 9999999999999999999998642 3357899999999999999999999988889999999999999877654332
Q ss_pred C--CCCCCCCccccccCCcEEEEEcCCCCCC-CCCCCcceEEEecCCcccccCCCccccccccCCC-------Ceeeccc
Q 012774 355 P--DECRRWGSTGRLSAGLEAKIVDPETGDS-LPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD-------GWMRTGD 424 (456)
Q Consensus 355 ~--~~~~~~~~~G~~~~~~~~~i~d~~~~~~-~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~-------g~~~TGD 424 (456)
. .......++|+|+++++++|+| +++++ ++.|+.|||+|+|+++++||+++++.|++.|..+ +||+|||
T Consensus 324 ~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGD 402 (620)
T 4dg8_A 324 TDDDLEEDDIPIGKAIAGTAVLLLD-EHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGD 402 (620)
T ss_dssp CTGGGGSSSCCCBEECTTEEEEEEC-TTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEE
T ss_pred cccccCCCCCCceecccCcEEEEEC-ccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCC
Confidence 2 2223457899999999999999 45554 8899999999999999999999999999999653 7999999
Q ss_pred eEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 425 l~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+|++++||+|+|+||.||+||++|+||+|.||
T Consensus 403 l~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eI 434 (620)
T 4dg8_A 403 RARYDEQGRLRFIGRGDGQVKLNGYRLDLPAL 434 (620)
T ss_dssp EEEECTTSCEEEEECSSSEEEETTEEEEHHHH
T ss_pred EEEECCCCeEEEEccCCCEEEECCEEcCHHHH
Confidence 99999999999999999999999999999774
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-69 Score=538.84 Aligned_cols=405 Identities=20% Similarity=0.288 Sum_probs=347.9
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
||+.++|.+.++++ |+++|+++. ++++||+||.++++++|+.|.+ .|+++||+|+++++|++++++++|||++
T Consensus 1 m~l~~~l~~~a~~~----p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~i~~~n~~e~~~~~la~~~ 73 (512)
T 3fce_A 1 MKLLEQIEKWAAET----PDQTAFVWR--DAKITYKQLKEDSDALAHWISS-EYPDDRSPIMVYGHMQPEMIINFLGCVK 73 (512)
T ss_dssp CCHHHHHHHHHHHS----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HSTTCCCCEEEEESSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHC----CCceEEEeC--CceEEHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 68999999999999 999999998 7899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccCCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEEE
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 197 (456)
+|++++|+++.++.+++.++++++++++++++..... ......++ ....+...................+++++++
T Consensus 74 ~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i 149 (512)
T 3fce_A 74 AGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTV--TDLPVRIV--SEDNLKDIFFTHKGNTPNPEHAVKGDENFYI 149 (512)
T ss_dssp TTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCS--SCCSSEEE--ETHHHHHHHHHTTTCCCCGGGSCCTTSEEEE
T ss_pred hCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccc--ccccccee--chhhhhhhcccccccCCCccccCCCCCeEEE
Confidence 9999999999999999999999999999999754321 11112222 1112222211111111222344677999999
Q ss_pred EcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecC---CCHHHHH
Q 012774 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKMML 274 (456)
Q Consensus 198 ~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~---~~~~~~~ 274 (456)
+|||||||.||+|+++|+++.+.+......+ +..++|++++.+|++|..++..++.++..|+++++.+. +++..++
T Consensus 150 ~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~ 228 (512)
T 3fce_A 150 IYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-NLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLF 228 (512)
T ss_dssp EEECC----CEEEEEEHHHHHHHHHHHHHHT-TCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHH
T ss_pred EECCCCCCCCceEEEehHHHHHHHHHHHHhc-CCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHH
Confidence 9999999999999999999999888877777 78899999999999999999889999999999999976 7899999
Q ss_pred HHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccC
Q 012774 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (456)
Q Consensus 275 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~ 354 (456)
+.++++++|++.++|+++..++.........++++|.+++||+++++++.+++.+.++++++++.||+||++..++....
T Consensus 229 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~ 308 (512)
T 3fce_A 229 ASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHV 308 (512)
T ss_dssp HHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEC
T ss_pred HHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEe
Confidence 99999999999999999999998877777789999999999999999999999999999999999999999877664322
Q ss_pred CC---CCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCcccccccc---CCCCeeeccceEEE
Q 012774 355 PD---ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL---LPDGWMRTGDLCYI 428 (456)
Q Consensus 355 ~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~---~~~g~~~TGDl~~~ 428 (456)
.. ......++|+|.++++++|+| ++++++++|+.|||+|+|++++.||+++++.+++.| +.++||+|||+|++
T Consensus 309 ~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~ 387 (512)
T 3fce_A 309 TEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV 387 (512)
T ss_dssp CHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE
T ss_pred ccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe
Confidence 11 123457899999999999999 889999999999999999999999999999999887 34679999999999
Q ss_pred ccCCcEEEecccccceeeCCeeecCCCC
Q 012774 429 DEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 429 ~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+||+++|.||.||+||++|++|+|.|+
T Consensus 388 -~dG~l~i~GR~~d~ik~~G~~v~p~eI 414 (512)
T 3fce_A 388 -ENGLLFYNGRLDFQIKLHGYRMELEEI 414 (512)
T ss_dssp -ETTEEEEEEEGGGCEEETTEEECHHHH
T ss_pred -cCCEEEEecccCCEEEECCEEECHHHH
Confidence 899999999999999999999999764
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-69 Score=540.07 Aligned_cols=405 Identities=24% Similarity=0.365 Sum_probs=344.3
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEEC--CCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINS--VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL 115 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~--~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~ 115 (456)
.|+.+++.++++++ |+++|+++. ..++++||+||.++++++|+.|++ .|+++||+|+++++|++++++++|||
T Consensus 18 ~~l~~~l~~~a~~~----p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~ 92 (541)
T 1v25_A 18 LNLWDFLERAAALF----GRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRA-LGVGVGDRVATLGFNHFRHLEAYFAV 92 (541)
T ss_dssp CCTHHHHHHHHHHS----TTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC----CCceEEEEecCCCCceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 69999999999999 999999852 235789999999999999999998 89999999999999999999999999
Q ss_pred HHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-----CC-eEEEEcCC------chhhhhcccCCCcc
Q 012774 116 LSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KH-RTILIDSP------EFDSMTMSWNSKHE 183 (456)
Q Consensus 116 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~-~~~~~~~~------~~~~~~~~~~~~~~ 183 (456)
+++|++++|+++.++.+++.+++++++++++|++++....+... .. .++.++.. .++++.....
T Consensus 93 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 168 (541)
T 1v25_A 93 PGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEA---- 168 (541)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSCC----
T ss_pred HhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCcccccHHHHhhccC----
Confidence 99999999999999999999999999999999998876654421 12 23443322 1333222111
Q ss_pred ccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHh--ccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcce
Q 012774 184 LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS--FASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMET 261 (456)
Q Consensus 184 ~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~ 261 (456)
......++++++++|||||||.||+|+++|+++....... ...+ ...++|++++.+|++|.+++..++.++..|++
T Consensus 169 -~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~ 246 (541)
T 1v25_A 169 -DPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-ALSEKDVVLPVVPMFHVNAWCLPYAATLVGAK 246 (541)
T ss_dssp -CCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-CCCTTCEEEECSCTTSHHHHTHHHHHHHHTCE
T ss_pred -CcccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-cCCCCCEEEEeccchhhhHHHHHHHHHhcCce
Confidence 1133466899999999999999999999999998776653 2333 57889999999999999998777889999999
Q ss_pred EEEecC-CCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEecc
Q 012774 262 AVVMQR-FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAY 340 (456)
Q Consensus 262 ~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~y 340 (456)
+++.+. +++..+++.|+++++|+++++|+++..|++.......+++++|.+++||+++++++.+++ +.+ ++++++.|
T Consensus 247 ~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~~~Y 324 (541)
T 1v25_A 247 QVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVRQGY 324 (541)
T ss_dssp EEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEEEEE
T ss_pred EEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHh-CCceeecc
Confidence 999864 799999999999999999999999999987654444568899999999999999999999 556 89999999
Q ss_pred CccccccccccccCCCC---------CCCCCccccccCCcEEEEEcCCCCCCCCC--CCcceEEEecCCcccccCCCccc
Q 012774 341 GLTESTAGVFRTVGPDE---------CRRWGSTGRLSAGLEAKIVDPETGDSLPP--GKEGELSIRGPTIMKGYVGEPEV 409 (456)
Q Consensus 341 G~tE~~~~~~~~~~~~~---------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~--g~~Gel~i~g~~~~~gy~~~~~~ 409 (456)
|+||++.+++....... ....+++|+|+++++++|+| +++++++. ++.|||+|+|+.++.||+++|+.
T Consensus 325 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~ 403 (541)
T 1v25_A 325 GLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEA 403 (541)
T ss_dssp ECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHH
T ss_pred cccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhh
Confidence 99999877665322110 02347899999999999999 67888884 36899999999999999999999
Q ss_pred cccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 410 TSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 410 ~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|++.|..+|||+|||+|++|+||+++|.||+||+||++|++|+|.||
T Consensus 404 t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eI 450 (541)
T 1v25_A 404 TRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDL 450 (541)
T ss_dssp HHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHH
T ss_pred hhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHH
Confidence 99999879999999999999999999999999999999999999764
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-68 Score=539.84 Aligned_cols=399 Identities=21% Similarity=0.240 Sum_probs=326.8
Q ss_pred CCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
..+++++|.++++++ |+++|+++. ++++||+||.++++++|+.|.+ .|+++||+|+|+++|++++++++|||+
T Consensus 74 ~~~l~~~l~~~a~~~----pd~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~ 146 (570)
T 4gr5_A 74 GACVHELFEAQAARA----PDAVALLHE--ADELTYGALNERANRLAHRLVG-LGVAPGTLVGVHLERGFDMVVALLAVL 146 (570)
T ss_dssp SCCHHHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHC----CCCeEEECC--CCcEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 369999999999999 999999998 8899999999999999999999 899999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccCCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEE
Q 012774 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (456)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 196 (456)
++|++++|+++.++.+++.+++++++++++|+++.....+.. ...+.+....... ...........++++++
T Consensus 147 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~d~a~ 218 (570)
T 4gr5_A 147 KAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTG--TTTLYVEDEAASD------APAGNLATGVGPEDVAC 218 (570)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCS--SEEEECCC-------------CCCCCCCCCTTSEEE
T ss_pred HHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccC--Ccceeeecccccc------ccccccCCCCCCCCeEE
Confidence 999999999999999999999999999999999766443322 1222221111000 00011223456789999
Q ss_pred EEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEec--CCCHHHHH
Q 012774 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ--RFDLKMML 274 (456)
Q Consensus 197 i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~--~~~~~~~~ 274 (456)
++|||||||.||+|+++|+++.+.... .... +..+++++++.+|++|..+...++.++..|+++++.+ .+++..++
T Consensus 219 i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~ 296 (570)
T 4gr5_A 219 VMFTSGSTGRPKGVMSPHRALTGTYLG-QDYA-GFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIG 296 (570)
T ss_dssp EECCSSCCSSCCCEEEEHHHHHHHHSS-CCSS-CCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHH
T ss_pred EEECCcCCCCCeEEEEecHHHHHHHHh-hhhc-CCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHH
Confidence 999999999999999999999776544 3333 6788999999999998777778889999999999986 47999999
Q ss_pred HHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccC
Q 012774 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (456)
Q Consensus 275 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~ 354 (456)
+.|+++++|++.++|+++..|.+... ..++++|.+++||++++++..+++.+.++++++++.||+||++.+++....
T Consensus 297 ~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~ 373 (570)
T 4gr5_A 297 ELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAV 373 (570)
T ss_dssp HHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEEC
T ss_pred HHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeee
Confidence 99999999999999999999987542 347899999999999999999999999989999999999999877654322
Q ss_pred C--CCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCC--------Ceeeccc
Q 012774 355 P--DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD--------GWMRTGD 424 (456)
Q Consensus 355 ~--~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~--------g~~~TGD 424 (456)
. .......++|+|+++++++|+| +++++++.|+.|||+|+|++++.||+++++.|.+.|..+ |||+|||
T Consensus 374 ~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGD 452 (570)
T 4gr5_A 374 VAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGD 452 (570)
T ss_dssp CGGGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEE
T ss_pred cccccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCC
Confidence 1 1223446799999999999999 779999999999999999999999999999999988543 7999999
Q ss_pred eEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 425 l~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+|++|+||+|+|.||+||+||++|++|+|.||
T Consensus 453 lg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eI 484 (570)
T 4gr5_A 453 LARRRADGVLEYVGRADDQVKIRGFRVEPGEV 484 (570)
T ss_dssp EEEECTTSCEEEEEC-----------------
T ss_pred eEEECCCCeEEEEcccCCEEEECcEEeCHHHH
Confidence 99999999999999999999999999999986
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-67 Score=534.53 Aligned_cols=407 Identities=20% Similarity=0.285 Sum_probs=343.6
Q ss_pred CCHH-HHhhhcccCCCCCCCCCcEEEEC---CCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHH
Q 012774 38 ISAV-DYVSSLRATLPWRDDDTVALINS---VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113 (456)
Q Consensus 38 ~~~~-~~l~~~~~~~~~~~p~~~A~~~~---~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~l 113 (456)
+|+. +++.+.++++ |+++|+++. ..++++||+||.++++++|+.|++ .|+++||+|+|+++|++++++++|
T Consensus 55 ~n~~~~~l~~~a~~~----pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~-~Gv~~Gd~V~l~~~~~~e~~~~~l 129 (580)
T 3etc_A 55 FNFAYDVVDVYARDS----PEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVK-HGIGKGDYVMLTLKSRYDFWYCML 129 (580)
T ss_dssp CCHHHHTHHHHHHHC----TTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECTTCTHHHHHHH
T ss_pred chHHHHHHHHHHhhC----CCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHH
Confidence 5666 8999999999 999999863 124689999999999999999998 899999999999999999999999
Q ss_pred HHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchH--HHHh-------ccCCeEEEEcCC------chhhhhccc
Q 012774 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--HKLA-------KLKHRTILIDSP------EFDSMTMSW 178 (456)
Q Consensus 114 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~-------~~~~~~~~~~~~------~~~~~~~~~ 178 (456)
||+++|++++|+++.++.+++.+++++++++++|++.+.. ..+. ......+.++.. ++.+.....
T Consensus 130 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (580)
T 3etc_A 130 GLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEES 209 (580)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCCTTCEEHHHHHHHS
T ss_pred HHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccccccccHHHHHhhC
Confidence 9999999999999999999999999999999999986543 3222 122344545432 122222221
Q ss_pred CCCcccc--ccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHH-HHHHH
Q 012774 179 NSKHELD--RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF-FCFRA 255 (456)
Q Consensus 179 ~~~~~~~--~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~-~~~~~ 255 (456)
......+ .....++++++++|||||||.||+|.++|.++...+....... ....++++++..|++|..++. .++.+
T Consensus 210 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (580)
T 3etc_A 210 SPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-NVEDDGLHYTVADSGWGKCVWGKLYGQ 288 (580)
T ss_dssp CSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-CCCTTCEEEECCCTTSTHHHHHTTHHH
T ss_pred CcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-CCCCCceEEEeCChHHHHHHHHHHHHH
Confidence 1111111 1246779999999999999999999999999888776655555 678899999999999988774 46788
Q ss_pred hHhcceEEEe--cCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCC
Q 012774 256 AALMETAVVM--QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPK 333 (456)
Q Consensus 256 l~~G~~~~~~--~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~ 333 (456)
+..|+++++. ..+++..+++.|+++++|+++++|+++..|.+. .....+++++|.+++|||++++++.++|.+.+ +
T Consensus 289 l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-g 366 (580)
T 3etc_A 289 WIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE-DLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFT-G 366 (580)
T ss_dssp HHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-CC---CCTTCCEEEECSSCCCHHHHHHHHHHH-S
T ss_pred HhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-ccccCCCccceEEEEccCCCCHHHHHHHHHHh-C
Confidence 9999999887 578999999999999999999999999999886 34456789999999999999999999999987 8
Q ss_pred CceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEec-----CCcccccCCCcc
Q 012774 334 VVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG-----PTIMKGYVGEPE 408 (456)
Q Consensus 334 ~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g-----~~~~~gy~~~~~ 408 (456)
+++++.||+||++..++.. .....+.+++|+|+|+++++|+| ++++++++|+.|||+|+| +.++.||+++|+
T Consensus 367 ~~i~~~YG~TE~~~~~~~~--~~~~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~ 443 (580)
T 3etc_A 367 IKLMEGFGQTETVVTIATF--PWMEPKPGSIGKPTPGYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPE 443 (580)
T ss_dssp CCCEEEECCTTSSCCEECC--TTSCCCTTCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHH
T ss_pred CeEecccccccccceeecC--CCCCCCCCccccCCCCCEEEEEC-CCCCCCCCCCceEEEEecCCCCCCeeeccccCCHh
Confidence 9999999999998765543 22344678999999999999999 679999999999999997 789999999999
Q ss_pred ccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 409 VTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 409 ~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
.+.+.| .+|||+|||+|++|+||+|+|.||.||+||++|++|+|.||
T Consensus 444 ~t~~~f-~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eI 490 (580)
T 3etc_A 444 RTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEV 490 (580)
T ss_dssp HHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHH
T ss_pred HHHhhc-CCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHH
Confidence 999999 58999999999999999999999999999999999999874
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-68 Score=530.04 Aligned_cols=400 Identities=24% Similarity=0.322 Sum_probs=340.6
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
+|+.++|.++++++ |+++|+++...++++||+||.++++++|+.|++ .|+++||+|+++++|++++++++|||++
T Consensus 2 ~tl~~~l~~~a~~~----p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 76 (504)
T 1t5h_X 2 QTVNEMLRRAATRA----PDHCALAVPARGLRLTHAELRARVEAVAARLHA-DGLRPQQRVAVVAPNSADVVIAILALHR 76 (504)
T ss_dssp CCHHHHHHHHHHHC----TTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhC----CCceEEEEcCCCceeEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 58999999999999 999999987556899999999999999999999 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEE--ccchHHHH-hcc-CCeEEEEcCCchhhhhcccC---CCccccccCCC
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFA--TSSVVHKL-AKL-KHRTILIDSPEFDSMTMSWN---SKHELDRAKVC 190 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 190 (456)
+|++++|+++.++.+++.+++++++++++++ ++.....+ ... ..+++. ++++..... ...........
T Consensus 77 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 151 (504)
T 1t5h_X 77 LGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIF-----LGDLVRDGEPYSYGPPIEDPQRE 151 (504)
T ss_dssp HTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCCCCEEEE-----GGGTEETTEECCCSCCCCCCCCC
T ss_pred hCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccccceeEE-----ecchhhcCcccccCCccCCCCCC
Confidence 9999999999999999999999999999999 77665555 322 223221 223222110 00011113456
Q ss_pred CCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCC--CCCcEEEEecchhhHhhH-HHHHHHhHhcceEEEecC
Q 012774 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKR--VSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQR 267 (456)
Q Consensus 191 ~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~ 267 (456)
++++++++|||||||.||+|+++|+++.+.+......+ +. .+.+++++.+|++|.+++ ..++.++..|+++++.+.
T Consensus 152 ~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~ 230 (504)
T 1t5h_X 152 PAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEE 230 (504)
T ss_dssp TTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-CCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSS
T ss_pred CCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-CCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCC
Confidence 78999999999999999999999999998887776666 45 788999999999999998 568899999999999999
Q ss_pred CCHHHHHHHHHHhcceeEEecHHHHHHHhcCCC--CCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCcccc
Q 012774 268 FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES 345 (456)
Q Consensus 268 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~ 345 (456)
+++..+++.|+++++|+++++|+++..|.+... ....+++++|.+++||+++++++.++|++.+ +..+++.||+||+
T Consensus 231 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~ 309 (504)
T 1t5h_X 231 FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEA 309 (504)
T ss_dssp CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-CSEEEEEEEETTT
T ss_pred CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc-Ccceeeeeccccc
Confidence 999999999999999999999999999987642 2445689999999999999999999999998 7899999999999
Q ss_pred ccccccccCCCCCCCCCccccccCCcEEEEEcCCCC---CCCCCCCcceEEEe-cCCcccccCCCccccccccCCCCeee
Q 012774 346 TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETG---DSLPPGKEGELSIR-GPTIMKGYVGEPEVTSATLLPDGWMR 421 (456)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~---~~~~~g~~Gel~i~-g~~~~~gy~~~~~~~~~~~~~~g~~~ 421 (456)
+..... . ....+++|.|.++++++|+| +.+ ++++.|+.|||+|+ |+.++.||+++++.+.+.| .+|||+
T Consensus 310 ~~~~~~--~---~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~ 382 (504)
T 1t5h_X 310 MNSLYM--R---QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYR 382 (504)
T ss_dssp EEEEEE--E---SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEE
T ss_pred cccccc--c---CCCCCccccCCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-cCCccc
Confidence 432221 1 23458899999999999999 445 88999999999999 9999999999999999999 689999
Q ss_pred ccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 422 TGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 422 TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|||+|++|+||+++|.||.||+||++|++|+|.||
T Consensus 383 TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eI 417 (504)
T 1t5h_X 383 TSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEI 417 (504)
T ss_dssp EEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHH
T ss_pred cCcEEEECCCceEEEeCcccCEEEECCEEECHHHH
Confidence 99999999999999999999999999999999764
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-68 Score=529.38 Aligned_cols=401 Identities=25% Similarity=0.361 Sum_probs=331.3
Q ss_pred CCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
++|+.++|.++++++ ||++|+++. ++++||+||.++++++|+.|++ .|+++||+|+++++|++++++++|||+
T Consensus 5 ~~tl~~~l~~~a~~~----pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 77 (509)
T 3ivr_A 5 DFTLADVYRRNAALF----PDRTAFMVD--GVRLTHRDYLARAERLASGLLR-DGVHTGDRVAILSQNCSEMIELIGAVA 77 (509)
T ss_dssp CCCHHHHHHHHHHHS----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHC----CCceEEEEC--CcEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 389999999999999 999999997 8899999999999999999998 899999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHh----cc-CC-eEEEEcCC--chhhhhcccCCCccccccC
Q 012774 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLA----KL-KH-RTILIDSP--EFDSMTMSWNSKHELDRAK 188 (456)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~----~~-~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 188 (456)
++|++++|+++.++.+++.+++++++++++|++++....+. .. .. .++.++.. .+..+..... ........
T Consensus 78 ~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 156 (509)
T 3ivr_A 78 LIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLAS-DTPFSAPE 156 (509)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCSSCEEGGGTCC-CSCCCCCC
T ss_pred HhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCcChhhHhhccC-CCCCCcCC
Confidence 99999999999999999999999999999999988765532 11 12 23333321 2222222111 11222345
Q ss_pred CCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecCC
Q 012774 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRF 268 (456)
Q Consensus 189 ~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~ 268 (456)
..++++++++|||||||.||+|+++|+++.+.+......+ +..++|++++.+|++|.+++...+.++..|+..++...+
T Consensus 157 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~ 235 (509)
T 3ivr_A 157 FGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-RLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKF 235 (509)
T ss_dssp CCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSC
T ss_pred CCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEeccc
Confidence 6778999999999999999999999999999888887777 788999999999999999997777777777777777789
Q ss_pred CHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccc
Q 012774 269 DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG 348 (456)
Q Consensus 269 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~ 348 (456)
++..+++.|+++++|+++++|+++..+++.. ...+++++|.++.+|++ +..+.+.+.+|++++++.||+||++.+
T Consensus 236 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~ 310 (509)
T 3ivr_A 236 DPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGL 310 (509)
T ss_dssp CHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEE
T ss_pred CHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccc
Confidence 9999999999999999999999999998875 34567899999999987 888999999999999999999999887
Q ss_pred cccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEE
Q 012774 349 VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYI 428 (456)
Q Consensus 349 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~ 428 (456)
++..... ....++|+|+++++++|+| ++++++++|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++
T Consensus 311 ~~~~~~~---~~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGDl~~~ 385 (509)
T 3ivr_A 311 STFAPYR---DRPKSAGRPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRF 385 (509)
T ss_dssp EEEEEGG---GSTTSCCEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEEEEEE
T ss_pred cccCccc---cCCCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEecCCccccccCCHHHhHHHh-hcCCcccccEEEE
Confidence 6654322 1234599999999999999 679999999999999999999999999999999999 4899999999999
Q ss_pred ccCCcEEEeccc--ccceeeCCeeecCCCC
Q 012774 429 DEDGFLFIVDRL--KDLIKYKGYQVLPLLN 456 (456)
Q Consensus 429 ~~dg~l~~~GR~--~d~ik~~G~~v~p~e~ 456 (456)
|+||+++|.||. ||+||++|++|+|.|+
T Consensus 386 ~~dG~l~~~GR~d~~d~ik~~G~~v~p~ei 415 (509)
T 3ivr_A 386 DADGYLFYAGRAPEKELIKTGGENVYPAEV 415 (509)
T ss_dssp CTTSCEEEEEEC------------------
T ss_pred CCCceEEEeCCCCcceeEEECCEEECHHHH
Confidence 999999999999 9999999999999885
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-67 Score=528.94 Aligned_cols=404 Identities=21% Similarity=0.278 Sum_probs=349.0
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
||+.++|.++++++ |+++|+++. ++++||+||.++++++|+.|.++.|.++|++|+++++|++++++++|||++
T Consensus 1 m~l~~~l~~~a~~~----p~~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~ 74 (511)
T 3e7w_A 1 MKLLHAIQTHAETY----PQTDAFRSQ--GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVK 74 (511)
T ss_dssp CCHHHHHHHHHHHS----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHC----CCCeEEEcC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHH
Confidence 68999999999999 999999997 889999999999999999998745888999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccCCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEEE
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 197 (456)
+|++++|+++.++.+++.+++++++++++|+++.............+ .+.++....... ........+++++++
T Consensus 75 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~a~i 148 (511)
T 3e7w_A 75 AGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQTV-----SAEELLENEGGS-VSQDQWVKEHETFYI 148 (511)
T ss_dssp HTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCCCSSCEE-----EHHHHHTSCSCC-CCGGGSCCTTSEEEE
T ss_pred hCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhccccccee-----cHhhhhccccCC-ccccccCCCCCeEEE
Confidence 99999999999999999999999999999997543221111111121 122332221111 122334567899999
Q ss_pred EcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecC---CCHHHHH
Q 012774 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKMML 274 (456)
Q Consensus 198 ~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~---~~~~~~~ 274 (456)
+|||||||.||+|+++|+++.+.+......+ ....++++++.+|++|..++..++.++..|+++++.+. +++..++
T Consensus 149 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~ 227 (511)
T 3e7w_A 149 IYTSGSTGNPKGVQISAANLQSFTDWICADF-PVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLF 227 (511)
T ss_dssp EEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-TTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHH
T ss_pred EECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-CCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHH
Confidence 9999999999999999999999888877777 67889999999999999999889999999999999875 6899999
Q ss_pred HHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccC
Q 012774 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (456)
Q Consensus 275 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~ 354 (456)
+.++++++|++.++|+++..++.........++++|.+++||+++++++.+++++.++++++++.||+||++..++....
T Consensus 228 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~ 307 (511)
T 3e7w_A 228 EELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEI 307 (511)
T ss_dssp HHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEE
T ss_pred HHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEec
Confidence 99999999999999999999998877667778999999999999999999999999999999999999999877664322
Q ss_pred CC---CCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCC-CC--eeeccceEEE
Q 012774 355 PD---ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP-DG--WMRTGDLCYI 428 (456)
Q Consensus 355 ~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~-~g--~~~TGDl~~~ 428 (456)
.. ......++|+|+++++++|+| ++++++++|+.|||+|+|+.++.||+++++.+++.|.. +| ||+|||+|++
T Consensus 308 ~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~ 386 (511)
T 3e7w_A 308 TNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI 386 (511)
T ss_dssp CHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE
T ss_pred cccccccCCcCCCcceeCCCEEEEEC-CCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc
Confidence 11 123456799999999999999 67999999999999999999999999999999998842 23 7999999999
Q ss_pred ccCCcEEEecccccceeeCCeeecCCCC
Q 012774 429 DEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 429 ~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+||++++.||.||+||++|++|+|.|+
T Consensus 387 -~dG~l~~~GR~~d~ik~~G~~v~p~eI 413 (511)
T 3e7w_A 387 -QDGQIFCQGRLDFQIKLHGYRMELEEI 413 (511)
T ss_dssp -ETTEEEEEEESSSEEEETTEEEEHHHH
T ss_pred -cCCeEEEEccccCEEEECCEEeCHHHH
Confidence 699999999999999999999999764
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-67 Score=527.93 Aligned_cols=403 Identities=22% Similarity=0.297 Sum_probs=334.4
Q ss_pred CC-HHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 38 IS-AVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 38 ~~-~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
+| +.+++.+.++ + |+++|+++. ++++||+||.++++++|+.|++ .|+++||+|+++++|++++++++|||+
T Consensus 23 ~~~~~~~l~~~~~-~----p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~ 94 (529)
T 2v7b_A 23 FNFAAYLFRLNET-R----AGKTAYIDD--TGSTTYGELEERARRFASALRT-LGVHPEERILLVMLDTVALPVAFLGAL 94 (529)
T ss_dssp CCHHHHHHHHTGG-G----TTSEEEECS--SCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSTHHHHHHHHHH
T ss_pred eeHHHHHHHhhhc-c----CCceEEEeC--CCCccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHH
Confidence 55 7888888888 8 999999987 7899999999999999999998 899999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-------CCeEEEEcCC--------chhhhhcccCCC
Q 012774 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-------KHRTILIDSP--------EFDSMTMSWNSK 181 (456)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-------~~~~~~~~~~--------~~~~~~~~~~~~ 181 (456)
++|++++|+++.++.+++.+++++++++++|+++.....+... ...+++.+.. .++++......
T Consensus 95 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 173 (529)
T 2v7b_A 95 YAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAP- 173 (529)
T ss_dssp HHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHTSCC-
T ss_pred HcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhhhccCCC-
Confidence 9999999999999999999999999999999998776554321 1233333321 23333321111
Q ss_pred ccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHH-HHHHHHhccCCCCCCCCcEEEEecchhhHhhHH-HHHHHhHhc
Q 012774 182 HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNL-TAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF-FCFRAAALM 259 (456)
Q Consensus 182 ~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~-~~~~~l~~G 259 (456)
........++++++++|||||||.||+|+++|+++ ..........+ +..+++++++.+|++|.+++. .++.++..|
T Consensus 174 -~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G 251 (529)
T 2v7b_A 174 -AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-GIAENDVVFSAAKLFFAYGLGNGLTFPLSVG 251 (529)
T ss_dssp -CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-CCCTTCEEEESSCTTSHHHHHHHTHHHHHHT
T ss_pred -cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-CCCCCcEEEEeecHHHHHHHHHHHHHHHhcC
Confidence 11223456789999999999999999999999999 55555544444 678899999999999999984 467889999
Q ss_pred ceEEEe-cCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEe
Q 012774 260 ETAVVM-QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ 338 (456)
Q Consensus 260 ~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~ 338 (456)
+++++. +.+++..+++.|+++++|+++++|+++..+++..........++|.+++||+++++++.+++++.+ ++++++
T Consensus 252 ~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~-g~~i~~ 330 (529)
T 2v7b_A 252 ATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHF-GCEILD 330 (529)
T ss_dssp CEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHH-SCCEEE
T ss_pred cEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHh-CCceee
Confidence 999987 678999999999999999999999999999886544333124899999999999999999999988 899999
Q ss_pred ccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCC
Q 012774 339 AYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG 418 (456)
Q Consensus 339 ~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g 418 (456)
.||+||++.+++.... .....+++|+|+++++++|+| +++++++.|+.|||+|+|+.++.||+++++.+.+.| .++
T Consensus 331 ~YG~TE~~~~~~~~~~--~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~ 406 (529)
T 2v7b_A 331 GIGSTEMLHIFLSNRA--GAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF-LGE 406 (529)
T ss_dssp EEECTTTSSEEEECCT--TCCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHE-ETT
T ss_pred eEchhhcCceeecccc--CCCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhh-hcC
Confidence 9999999766554322 224568999999999999999 789999999999999999999999999999999999 489
Q ss_pred eeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 419 WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 419 ~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
||+|||+|++|+||+++|.||.||+||++|++|+|.|+
T Consensus 407 ~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eI 444 (529)
T 2v7b_A 407 WIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEV 444 (529)
T ss_dssp EEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHH
T ss_pred CcccCceEEECCCccEEEeCccCCeEEECCEEECHHHH
Confidence 99999999999999999999999999999999999764
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-67 Score=540.39 Aligned_cols=410 Identities=19% Similarity=0.222 Sum_probs=342.4
Q ss_pred CC-HHHHhhhcccCCCCCCCCCcEEEECC----CCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHH
Q 012774 38 IS-AVDYVSSLRATLPWRDDDTVALINSV----TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILY 112 (456)
Q Consensus 38 ~~-~~~~l~~~~~~~~~~~p~~~A~~~~~----~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~ 112 (456)
+| ++++|.++++++ |+++|+++.. .++++||+||.++++++|+.|++ +|+++||+|+|+++|++++++++
T Consensus 75 ~n~~~~~l~~~a~~~----pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~-~Gv~~Gd~V~i~~~~~~e~vva~ 149 (652)
T 1pg4_A 75 LNLAANCLDRHLQEN----GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-LGIKKGDVVAIYMPMVPEAAVAM 149 (652)
T ss_dssp ECHHHHHTGGGHHHH----TTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEEECCSSHHHHHHH
T ss_pred hhHHHHHHHHHhccC----CCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHH
Confidence 44 556777788888 9999999731 34789999999999999999998 89999999999999999999999
Q ss_pred HHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchH------------HH-Hhcc---C-CeEEEEcCC------
Q 012774 113 FSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV------------HK-LAKL---K-HRTILIDSP------ 169 (456)
Q Consensus 113 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~------------~~-~~~~---~-~~~~~~~~~------ 169 (456)
|||+++|++++|+++.++.+++.+++++++++++|+++... .. +... . ..+++++..
T Consensus 150 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 229 (652)
T 1pg4_A 150 LACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW 229 (652)
T ss_dssp HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC
T ss_pred HHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccc
Confidence 99999999999999999999999999999999999986532 11 1111 1 234444321
Q ss_pred ------chhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHH-hccCCCCCCCCcEEEEecc
Q 012774 170 ------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS-SFASSPKRVSPAVMLFTMP 242 (456)
Q Consensus 170 ------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~-~~~~~~~~~~~~~~~~~~p 242 (456)
.|.++...... ........++++++++|||||||.||||+++|+++...... ....+ ...++|++++.+|
T Consensus 230 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d~~l~~~~ 306 (652)
T 1pg4_A 230 QEGRDLWWRDLIEKASP--EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-DYHPGDIYWCTAD 306 (652)
T ss_dssp CBTTEEEHHHHHTTSCS--CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-TCCTTCEEEECSC
T ss_pred cCCCceeHHHHHhhcCC--CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-CCCCCCEEEEccC
Confidence 13333322111 11223345789999999999999999999999998776643 33334 6788999999999
Q ss_pred hhhHhhH-HHHHHHhHhcceEEEecC----CCHHHHHHHHHHhcceeEEecHHHHHHHhcCCC--CCCCCCCCceEEEec
Q 012774 243 YFHIYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACG 315 (456)
Q Consensus 243 ~~~~~g~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~v~~g 315 (456)
++|..++ ..++.++..|+++++.+. +++..+++.|+++++|+++++|+++..|++... ....+++++|.+++|
T Consensus 307 ~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~g 386 (652)
T 1pg4_A 307 VGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSV 386 (652)
T ss_dssp TTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEE
T ss_pred CeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEe
Confidence 9999998 668899999999999874 589999999999999999999999999988654 344578999999999
Q ss_pred CCCCCHHHHHHHHHhCC--CCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEE
Q 012774 316 AAPLGKDTIMAFASKFP--KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELS 393 (456)
Q Consensus 316 G~~~~~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~ 393 (456)
||++++++++++.+.++ ++++++.||+||++.+++.........+.+++|+|++|++++|+| +++++++.|+.|||+
T Consensus 387 Ge~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~GEl~ 465 (652)
T 1pg4_A 387 GEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLV 465 (652)
T ss_dssp SSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEE
T ss_pred cCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCceEEEE
Confidence 99999999999999883 289999999999987666533222334668999999999999999 679999999999999
Q ss_pred Eec--CCcccccCCCccccccccC--CCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 394 IRG--PTIMKGYVGEPEVTSATLL--PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 394 i~g--~~~~~gy~~~~~~~~~~~~--~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|+| |+++.||+++++.+.+.+. .+|||+|||+|++|+||+|+|+||+||+||++|+||+|.||
T Consensus 466 i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eI 532 (652)
T 1pg4_A 466 ITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEI 532 (652)
T ss_dssp ECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHH
T ss_pred EccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHH
Confidence 999 7899999999998877763 37899999999999999999999999999999999999874
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-67 Score=530.64 Aligned_cols=395 Identities=19% Similarity=0.234 Sum_probs=337.4
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.++.++|.+.++++ |+++|+++. ++++||+||.++++++|+.|.+ .|+++||+|+++++|++++++++|||++
T Consensus 39 ~~l~~~l~~~a~~~----p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 111 (563)
T 1amu_A 39 KTIHQLFEEQVSKR----PNNVAIVCE--NEQLTYHELNVKANQLARIFIE-KGIGKDTLVGIMMEKSIDLFIGILAVLK 111 (563)
T ss_dssp CCHHHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHC----CCCeEEEeC--CceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 68999999999999 999999987 7899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccC--CeEEEEcCCchhhhhcccCCCccccccCCCCCCEE
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK--HRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVA 195 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 195 (456)
+|++++|+++.++.+++.+++++++++++|++++....+.... ..+..++...+.. .. . ........+++++
T Consensus 112 ~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~-~~~~~~~~~~d~a 185 (563)
T 1amu_A 112 AGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKI---RE--G-TNLHVPSKSTDLA 185 (563)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCSTTTT---SC--C-SCCCCCCCTTSEE
T ss_pred hCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccccCceeeecchhhcc---cc--C-ccCCCCCCCCCeE
Confidence 9999999999999999999999999999999988776655432 2233332211110 00 0 1112234678999
Q ss_pred EEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecC---CCHHH
Q 012774 196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKM 272 (456)
Q Consensus 196 ~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~---~~~~~ 272 (456)
+++|||||||.||+|+++|+++.+........+ +..++|++++.+|++|..++..++.++..|+++++.+. +++..
T Consensus 186 ~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~ 264 (563)
T 1amu_A 186 YVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-NVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVK 264 (563)
T ss_dssp EEEEEC-----CEEEEEESHHHHHHHHHHHHTS-CCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHH
T ss_pred EEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-CCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHH
Confidence 999999999999999999999998887776666 67889999999999999988888899999999999875 68999
Q ss_pred HHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccc
Q 012774 273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352 (456)
Q Consensus 273 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~ 352 (456)
+++.++++++|++.++|+++..+... .++++|.+++||+++++++.++|.+ .+++++.||+||++.+++..
T Consensus 265 ~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~---~~~~~~~YG~TE~~~~~~~~ 335 (563)
T 1amu_A 265 FEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKE---KVTYINAYGPTETTICATTW 335 (563)
T ss_dssp HHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTT---TSEEEEEECCGGGSSCSEEE
T ss_pred HHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHh---CCeEEEEECcCHHhHhheee
Confidence 99999999999999999999877542 4678999999999999999999876 47899999999998766543
Q ss_pred cCCC-CCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCC------CCeeeccce
Q 012774 353 VGPD-ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP------DGWMRTGDL 425 (456)
Q Consensus 353 ~~~~-~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~------~g~~~TGDl 425 (456)
.... ......++|+|+++++++|+| +++++++.|+.|||+|+|++++.||+++|+.|.+.|.. ++||+|||+
T Consensus 336 ~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDl 414 (563)
T 1amu_A 336 VATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQ 414 (563)
T ss_dssp ECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEE
T ss_pred ecccccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCE
Confidence 3222 223457899999999999999 78999999999999999999999999999999988853 359999999
Q ss_pred EEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 426 CYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 426 ~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|++|+||+|+|.||+||+||++|++|+|.||
T Consensus 415 g~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eI 445 (563)
T 1amu_A 415 ARWLSDGNIEYLGRIDNQVKIRGHRVELEEV 445 (563)
T ss_dssp EEECTTSCEEEEEEGGGEEEETTEEEEHHHH
T ss_pred EEEcCCCeEEEeccccCEEEECCEEeCHHHH
Confidence 9999999999999999999999999999764
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-67 Score=539.02 Aligned_cols=404 Identities=23% Similarity=0.310 Sum_probs=345.5
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
+++.+++.++++ ||++|+++. ++++||+||.++++++|+.|++ .|+++||+|+++++|++++++++|||++
T Consensus 27 ~~l~~~~~~~a~------pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~V~l~~~~s~~~vva~lA~l~ 97 (617)
T 3rg2_A 27 LPLTDILTRHAA------SDSIAVIDG--ERQLSYRELNQAADNLACSLRR-QGIKPGETALVQLGNVAELYITFFALLK 97 (617)
T ss_dssp CCTTHHHHTTTT------CCSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHhhC------CCCeEEecC--CceEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCcHHHHHHHHHHHh
Confidence 799999998876 799999998 8899999999999999999999 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchH--------HHHh--ccCCeEE-EEcCCc---hhhhhcccCCCcc
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--------HKLA--KLKHRTI-LIDSPE---FDSMTMSWNSKHE 183 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--------~~~~--~~~~~~~-~~~~~~---~~~~~~~~~~~~~ 183 (456)
+|++++|+++..+.+++.++++++++++++++.... ..+. ......+ ..+... +........ ..
T Consensus 98 aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 175 (617)
T 3rg2_A 98 LGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPA--ED 175 (617)
T ss_dssp HTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCSTTBHHHHHHSCC--SS
T ss_pred cCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccccchhhhhcccc--cc
Confidence 999999999999999999999999999999986543 1111 1122222 233222 222222111 11
Q ss_pred ccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHH--HHHHHhHhcce
Q 012774 184 LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF--FCFRAAALMET 261 (456)
Q Consensus 184 ~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~--~~~~~l~~G~~ 261 (456)
.......++++++++|||||||.||+|+++|+++.+.+......+ ...+++++++.+|++|.+++. .++.++..|++
T Consensus 176 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~ 254 (617)
T 3rg2_A 176 FTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGT 254 (617)
T ss_dssp CCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCE
T ss_pred cCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCE
Confidence 222345678999999999999999999999999999888877776 688999999999999999884 58899999999
Q ss_pred EEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCC--CCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEec
Q 012774 262 AVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (456)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~ 339 (456)
+++.+.+++..+++.++++++|++.++|+++..+++.... ....++++|.+++|||++++++.++|.+.+ ++++++.
T Consensus 255 ~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~~ 333 (617)
T 3rg2_A 255 VVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQV 333 (617)
T ss_dssp EEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEEE
T ss_pred EEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEEE
Confidence 9999989999999999999999999999999998775332 233689999999999999999999999998 8999999
Q ss_pred cCccccccccccccCCCCCCCCCcccccc-CCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCC
Q 012774 340 YGLTESTAGVFRTVGPDECRRWGSTGRLS-AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG 418 (456)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g 418 (456)
||+||++..+.... ........++|+|+ ++.+++|+| +++++++.|+.|||+|+|+++++||+++++.|.+.|..++
T Consensus 334 YG~tE~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~ 411 (617)
T 3rg2_A 334 FGMAEGLVNYTRLD-DSAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANG 411 (617)
T ss_dssp EEETTEEEEECCTT-SCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTS
T ss_pred eccCcceeecccCC-CcccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCC
Confidence 99999986544321 11112235789997 788999999 7899999999999999999999999999999999999999
Q ss_pred eeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 419 WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 419 ~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
||+|||+|++++||+|+|+||.||+||++|+||+|.||
T Consensus 412 ~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eI 449 (617)
T 3rg2_A 412 FYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEI 449 (617)
T ss_dssp CEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHH
T ss_pred ceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHH
Confidence 99999999999999999999999999999999999764
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-67 Score=529.92 Aligned_cols=405 Identities=21% Similarity=0.296 Sum_probs=340.5
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.|+.++|.+.++++ |+++|+++. ++++||+||.++++++|+.|.+ .|+++||+|+++++|++++++++|||++
T Consensus 4 ~~l~~~l~~~a~~~----p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~i~~~n~~~~~~~~lA~~~ 76 (521)
T 3l8c_A 4 KDMIDSIEQFAQTQ----ADFPVYDCL--GERRTYGQLKRDSDSIAAFIDS-LALLAKSPVLVFGAQTYDMLATFVALTK 76 (521)
T ss_dssp CCHHHHHHHHHHHS----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TCCCTTCCEEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC----CCCcceecC--CCeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 58999999999999 999999998 8899999999999999999999 9999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccCCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEEE
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 197 (456)
+|++++|+++.++.+++.+++++++++++|++++....+. ....+.+. ......... ..........+++++++
T Consensus 77 ~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~d~a~i 150 (521)
T 3l8c_A 77 SGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--GISLVSLS--EIESAKLAE--MPYERTHSVKGDDNYYI 150 (521)
T ss_dssp TTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--TSEEEEHH--HHHHHHHHT--CCCCCSSCCCTTSEEEE
T ss_pred hCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc--cCcccchh--hhhhccccc--CCcccCCCCCCCCcEEE
Confidence 9999999999999999999999999999999876533222 11222111 111111111 00112234567899999
Q ss_pred EcCCCCCCCCchhcccHHHHHHHHHHhccCC-CCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecCC---CHHHH
Q 012774 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASS-PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRF---DLKMM 273 (456)
Q Consensus 198 ~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~---~~~~~ 273 (456)
+|||||||.||+|+++|+++.+......... ......+++++..|++|..++..++.++..|+++++.+.. ++..+
T Consensus 151 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~ 230 (521)
T 3l8c_A 151 IFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQL 230 (521)
T ss_dssp EECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHH
T ss_pred EEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHH
Confidence 9999999999999999999998776655441 1567889999999999999888888999999999998764 89999
Q ss_pred HHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCcccccccccccc
Q 012774 274 LKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353 (456)
Q Consensus 274 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~ 353 (456)
++.+.++++|++.++|+++..+..........++++|.+++||+++++++.+++.+.++++++++.||+||++..++...
T Consensus 231 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~ 310 (521)
T 3l8c_A 231 FTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIE 310 (521)
T ss_dssp HHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEE
T ss_pred HHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceee
Confidence 99999999999999999999998877666677899999999999999999999999999999999999999987765432
Q ss_pred CCC---CCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCcccccccc---CCCCeeeccceEE
Q 012774 354 GPD---ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL---LPDGWMRTGDLCY 427 (456)
Q Consensus 354 ~~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~---~~~g~~~TGDl~~ 427 (456)
... ......++|+|+++++++|+| ++++++++|+.|||+|+|++++.||+++++.+++.| +.+|||+|||+|+
T Consensus 311 ~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~ 389 (521)
T 3l8c_A 311 ITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGS 389 (521)
T ss_dssp ECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEE
T ss_pred cccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEE
Confidence 111 122456899999999999999 779999999999999999999999999999999987 4568999999999
Q ss_pred EccCCcEEEecccccceeeCCeeecCCCC
Q 012774 428 IDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 428 ~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+|+||+++|.||.||+||++|++|+|.|+
T Consensus 390 ~d~dG~l~~~GR~~d~i~~~G~~v~p~eI 418 (521)
T 3l8c_A 390 LTEDNILLYGGRLDFQIKYAGYRIELEDV 418 (521)
T ss_dssp ECSSSCEEEEEEGGGBCC-----CBHHHH
T ss_pred EeCCCeEEEeCcccceEeECCEEeCHHHH
Confidence 99999999999999999999999999764
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-66 Score=525.89 Aligned_cols=403 Identities=20% Similarity=0.293 Sum_probs=341.3
Q ss_pred CC-HHHHhhhcccC-----CCCCCCCCcEEEECC---CCceecHHHHHHHHHHHHHHhHhhc-CCCCCCEEEEEcCCCCc
Q 012774 38 IS-AVDYVSSLRAT-----LPWRDDDTVALINSV---TGLRVSFSEFTRRTNSLASYLQNVT-RLSKNDTAFVLSTNSIE 107 (456)
Q Consensus 38 ~~-~~~~l~~~~~~-----~~~~~p~~~A~~~~~---~~~~~Ty~eL~~~~~~~a~~L~~~~-gi~~gd~V~l~~~~~~~ 107 (456)
++ +.+++.+.+++ + |+++|+++.+ .++++||+||.++++++|+.|.+ . |+++||+|+|+++|+++
T Consensus 37 ~~~~~~~l~~~a~~~~a~~~----p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-~~Gv~~gd~V~i~~~n~~e 111 (570)
T 3c5e_A 37 FNFASDVLDHWADMEKAGKR----PPSPALWWVNGKGKELMWNFRELSENSQQAANVLSG-ACGLQRGDRVAVVLPRVPE 111 (570)
T ss_dssp CCHHHHTHHHHHHHHHTTSS----CCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHT-TTCCCTTCEEEEECCSCHH
T ss_pred ccHHHHHHHHHHhhccccCC----CCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHH-ccCCCCCCEEEEEcCCCHH
Confidence 44 46788888777 8 9999998732 24789999999999999999998 6 99999999999999999
Q ss_pred HHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhc----c-CC-eEEEEcCC------chhhhh
Q 012774 108 IPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----L-KH-RTILIDSP------EFDSMT 175 (456)
Q Consensus 108 ~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~----~-~~-~~~~~~~~------~~~~~~ 175 (456)
+++++|||+++|++++|+++.++.+++.+++++++++++|++++....+.. . .. .++.++.. .++++.
T Consensus 112 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (570)
T 3c5e_A 112 WWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLL 191 (570)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCCTTSEEHHHHH
T ss_pred HHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCccccccHHHHh
Confidence 999999999999999999999999999999999999999999887665532 1 12 23444431 233332
Q ss_pred cccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHH--HHHHhccCCCCCCCCcEEEEecchhhHhhHH-HH
Q 012774 176 MSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA--AVASSFASSPKRVSPAVMLFTMPYFHIYGLF-FC 252 (456)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~-~~ 252 (456)
..... ........++++++++|||||||.||+|+++|+ ++. ..... ..+ +...+|++++.+|++|..++. .+
T Consensus 192 ~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-~~~~~d~~~~~~p~~~~~~~~~~~ 266 (570)
T 3c5e_A 192 NEAST--THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-GLQASDIMWTISDTGWILNILCSL 266 (570)
T ss_dssp HHSCS--CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-SCCTTCEEEECCCTTSHHHHHHTT
T ss_pred hcccc--cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-CCCCCceEEEcCchHHHHHHHHHH
Confidence 22111 111233567899999999999999999999999 444 33333 444 678899999999999999985 67
Q ss_pred HHHhHhcceEEEec--CCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHh
Q 012774 253 FRAAALMETAVVMQ--RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASK 330 (456)
Q Consensus 253 ~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~ 330 (456)
+.++..|+++++.+ .+++..+++.|+++++|+++++|+++..|.+.. ....+++++|.+++||+++++++.++|++.
T Consensus 267 ~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~ 345 (570)
T 3c5e_A 267 MEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLLPETLENWRAQ 345 (570)
T ss_dssp HHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred HHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccceEEEEcCCcCCHHHHHHHHHH
Confidence 88999999999986 689999999999999999999999999998863 334568899999999999999999999998
Q ss_pred CCCCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEe-----cCCcccccCC
Q 012774 331 FPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR-----GPTIMKGYVG 405 (456)
Q Consensus 331 ~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~-----g~~~~~gy~~ 405 (456)
+ ++++++.||+||++..++.. .......+++|+|+++++++|+| +++++++.|+.|||+|+ |++++.||++
T Consensus 346 ~-g~~i~~~YG~TE~~~~~~~~--~~~~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~ 421 (570)
T 3c5e_A 346 T-GLDIRESYGQTETGLTCMVS--KTMKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVD 421 (570)
T ss_dssp H-SCCCEEEEEETTTEEEEECC--TTSCCCTTCCCEECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBCCTTCCCEETT
T ss_pred h-CCchhhccchhhcccceecC--cccccCCCcccccCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCCCchhhccccC
Confidence 8 89999999999998665442 22234568999999999999999 67999999999999999 9999999999
Q ss_pred CccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 406 EPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 406 ~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+++.+.+.| .++||+|||+|++|+||+|+|.||.||+||++|++|+|.||
T Consensus 422 ~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eI 471 (570)
T 3c5e_A 422 NPDKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEV 471 (570)
T ss_dssp CHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHH
T ss_pred ChhHhhhhh-cCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHH
Confidence 999999999 58999999999999999999999999999999999999764
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-66 Score=534.00 Aligned_cols=414 Identities=18% Similarity=0.258 Sum_probs=342.5
Q ss_pred CCCCC-HHHHhhhcccCCCCCCCCCcEEEEC----CCCceecHHHHHHHHHHHHHHhH-hhcCCCCCCEEEEEcCCCCcH
Q 012774 35 DAPIS-AVDYVSSLRATLPWRDDDTVALINS----VTGLRVSFSEFTRRTNSLASYLQ-NVTRLSKNDTAFVLSTNSIEI 108 (456)
Q Consensus 35 ~~~~~-~~~~l~~~~~~~~~~~p~~~A~~~~----~~~~~~Ty~eL~~~~~~~a~~L~-~~~gi~~gd~V~l~~~~~~~~ 108 (456)
++.+| ++++|.++++++ |+++|+++. ..++++||+||.++++++|+.|+ + +|+++||+|+|+++|++++
T Consensus 78 ~~~~n~~~~~l~~~a~~~----pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~-~Gv~~Gd~V~i~~~~~~e~ 152 (663)
T 1ry2_A 78 NGQLNACYNCVDRHALKT----PNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYS-MGVRKGDTVAVYMPMVPEA 152 (663)
T ss_dssp TCEECHHHHHTHHHHTTC----TTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHT-SCCCTTCEEEECCCSSHHH
T ss_pred CCCccHHHHHHHHHhccC----CCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCHHH
Confidence 33344 456776778888 999999973 23578999999999999999999 7 8999999999999999999
Q ss_pred HHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchH---------HHHh----cc-C-CeEEEEcCC----
Q 012774 109 PILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV---------HKLA----KL-K-HRTILIDSP---- 169 (456)
Q Consensus 109 ~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~----~~-~-~~~~~~~~~---- 169 (456)
++++|||+++|++++|+++.++.+++.+++++++++++|+++... ..+. .. . ..+++++..
T Consensus 153 v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~ 232 (663)
T 1ry2_A 153 IITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS 232 (663)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSS
T ss_pred HHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCc
Confidence 999999999999999999999999999999999999999986542 1111 11 1 234444321
Q ss_pred ---------chhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHh-ccCCCCCCCCcEEEE
Q 012774 170 ---------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS-FASSPKRVSPAVMLF 239 (456)
Q Consensus 170 ---------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~-~~~~~~~~~~~~~~~ 239 (456)
.|.++...... ........++++++++|||||||.||||+++|+++....... ...+ ...++|++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d~~~~ 309 (663)
T 1ry2_A 233 VAFHAPRDLDWATEKKKYKT--YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-DTHQEDVFFT 309 (663)
T ss_dssp CCCCSSSEEEHHHHHTTSCS--CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-CCCSSCEEEE
T ss_pred cccCCCccccHHHHHhhcCC--CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-CCCCCcEEEE
Confidence 12232221110 112233467899999999999999999999999987666433 3334 6788999999
Q ss_pred ecchhhHhhH-HHHHHHhHhcceEEEecC----CCHHHHHHHHHHhcceeEEecHHHHHHHhcCCC--CCCCCCCCceEE
Q 012774 240 TMPYFHIYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETV 312 (456)
Q Consensus 240 ~~p~~~~~g~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~v 312 (456)
.+|++|+.+. ..++.++..|+++++.+. +++..+++.|+++++|+++++|++++.|.+... ....+++++|.+
T Consensus 310 ~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i 389 (663)
T 1ry2_A 310 AGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCL 389 (663)
T ss_dssp CSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEE
T ss_pred cCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEE
Confidence 9999999998 667899999999999864 589999999999999999999999999988654 234578999999
Q ss_pred EecCCCCCHHHHHHHHHhCC--CCceEeccCccccccccccccC-CCCCCCCCccccccCCcEEEEEcCCCCCCCCC-CC
Q 012774 313 ACGAAPLGKDTIMAFASKFP--KVVLVQAYGLTESTAGVFRTVG-PDECRRWGSTGRLSAGLEAKIVDPETGDSLPP-GK 388 (456)
Q Consensus 313 ~~gG~~~~~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~-g~ 388 (456)
++|||++++++++++.+.++ ++++++.||+||++..++.... .....+.+++|+|++|++++|+|++++++++. |+
T Consensus 390 ~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~ 469 (663)
T 1ry2_A 390 GSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHA 469 (663)
T ss_dssp EECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSC
T ss_pred EEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCc
Confidence 99999999999999999883 3899999999999876655322 12334678999999999999999548999988 99
Q ss_pred cceEEEec--CCcccccCCCccccccccCC--CCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 389 EGELSIRG--PTIMKGYVGEPEVTSATLLP--DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 389 ~Gel~i~g--~~~~~gy~~~~~~~~~~~~~--~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
.|||+|+| |+++.||+++++.+.+.+.. +|||+|||+|++|+||+++|+||+||+||++|+||+|.||
T Consensus 470 ~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eI 541 (663)
T 1ry2_A 470 EGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEI 541 (663)
T ss_dssp EEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHH
T ss_pred ceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHH
Confidence 99999999 58999999999988887643 7899999999999999999999999999999999999874
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-66 Score=517.10 Aligned_cols=395 Identities=23% Similarity=0.317 Sum_probs=329.9
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
||+.++|.++++++ |+++|+++. ++++||+||.++++++|+.|++ . +||+|+++++|++++++++|||++
T Consensus 1 mtl~~~l~~~a~~~----pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~---~gd~V~i~~~n~~e~~~~~lA~~~ 70 (501)
T 3ipl_A 1 MSLDFWLYKQAQQN----GHHIAITDG--QESYTYQNLYCEASLLAKRLKA-Y---QQSRVGLYIDNSIQSIILIHACWL 70 (501)
T ss_dssp --CCCHHHHHHHHH----TTSEEEECS--SCEEEHHHHHHHHHHHHHHHHT-T---CCSEEEEECCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhc----CCceEEEeC--CcEEEHHHHHHHHHHHHHHHHH-c---CCCEEEEEcCCCHHHHHHHHHHHH
Confidence 57889999999999 999999988 7899999999999999999998 4 899999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc----CCeEEEE----cC-------Cchhhhh---cccC
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHRTILI----DS-------PEFDSMT---MSWN 179 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~----~~-------~~~~~~~---~~~~ 179 (456)
+|++++|+++.++.+++.+++++++++++|++.......... ....+.. .. ..+.... ....
T Consensus 71 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (501)
T 3ipl_A 71 ANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKE 150 (501)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC--------------------------------C
T ss_pred cCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhccccC
Confidence 999999999999999999999999999999987654332110 0000000 00 0000000 0000
Q ss_pred CCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhc
Q 012774 180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALM 259 (456)
Q Consensus 180 ~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G 259 (456)
...........++++++++|||||||.||+|+++|+++.+........+ +..+++++++.+|++|.+++..++.++..|
T Consensus 151 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G 229 (501)
T 3ipl_A 151 SPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-GFDRDTNWLSVLPIYHISGLSVLLRAVIEG 229 (501)
T ss_dssp CHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-CCCTTCEEEECSCTTSHHHHHHHHHHHHHT
T ss_pred CcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-CCCccCEEEEeCcHHHHHHHHHHHHHHHcC
Confidence 0001112345678999999999999999999999999999888877777 788999999999999999998889999999
Q ss_pred ceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEec
Q 012774 260 ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (456)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~ 339 (456)
+++++.+.+++..+++.|+++++|+++++|+++..|.+...... .++|.+++||+++++++.+.+++. ++++++.
T Consensus 230 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~~ 304 (501)
T 3ipl_A 230 FTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQY--NLPIYNS 304 (501)
T ss_dssp CEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHHT--TCCEEEE
T ss_pred ceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHHh--CCCEecc
Confidence 99999999999999999999999999999999999988754432 289999999999999999999884 8999999
Q ss_pred cCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCe
Q 012774 340 YGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGW 419 (456)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~ 419 (456)
||+||++..+............+++|+|+++++++|+|++ +|+.|||+|+|+.++.||+++++.+.. | .+||
T Consensus 305 YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~ 376 (501)
T 3ipl_A 305 FGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGT-F-ENGY 376 (501)
T ss_dssp EEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ETTE
T ss_pred ccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChhhcch-h-cCCc
Confidence 9999998765543222223356789999999999999954 456799999999999999999999887 5 6899
Q ss_pred eeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 420 MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 420 ~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|+|||+|++|+||+++|.||.||+||++|++|+|.|+
T Consensus 377 ~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~ei 413 (501)
T 3ipl_A 377 FNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQI 413 (501)
T ss_dssp EEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHH
T ss_pred eecCCEEEEcCCCeEEEEccccceEEECCEEECHHHH
Confidence 9999999999999999999999999999999999764
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-66 Score=529.24 Aligned_cols=405 Identities=23% Similarity=0.308 Sum_probs=341.1
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECC--CCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSV--TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL 115 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~--~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~ 115 (456)
+|+.++|.++++++ |+++|+++.+ .++++||+||.++++++|+.|++ .|+++||+|+++++|++++++++|||
T Consensus 11 ~tl~~~l~~~a~~~----p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~gv~~gd~V~i~~~~~~~~~~~~lA~ 85 (590)
T 3kxw_A 11 QSLVDVVRLRALHS----PNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQA-EGAKPGDRVLLLFAPGLPLIQAFLGC 85 (590)
T ss_dssp SSHHHHHHHHHHHC----TTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhC----CCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchhHHHHHHHH
Confidence 79999999999999 9999998642 35799999999999999999999 89999999999999999999999999
Q ss_pred HHhCCeEecCCCCCC---HHHHHHHhhhcCCeEEEEccchHHHHhccCC-------eEEEEcCCchhhhhcccCCCcccc
Q 012774 116 LSLGVIISPANPVNT---ESEISRQIQLSNPVIAFATSSVVHKLAKLKH-------RTILIDSPEFDSMTMSWNSKHELD 185 (456)
Q Consensus 116 ~~~G~~~v~l~~~~~---~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 185 (456)
+++|++++|+++..+ .+++.++++.+++++++++.+....+..... .+..+. .+.+.... .....
T Consensus 86 ~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~ 160 (590)
T 3kxw_A 86 LYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIA---LESIELNR--SSSWQ 160 (590)
T ss_dssp HHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEE---GGGCCGGG--GGGCC
T ss_pred HHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceee---chhccccc--cccCC
Confidence 999999999999884 5789999999999999999887766543210 011111 11111100 11122
Q ss_pred ccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHH-HHHHhHhcceEEE
Q 012774 186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFF-CFRAAALMETAVV 264 (456)
Q Consensus 186 ~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~l~~G~~~~~ 264 (456)
.....++++++++|||||||.||+|+++|+++.+.+......+ +..+++++++++|++|.+++.. ++.++..|+++++
T Consensus 161 ~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~ 239 (590)
T 3kxw_A 161 PTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-HMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIM 239 (590)
T ss_dssp CCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEE
T ss_pred CCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-CCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEE
Confidence 3345778999999999999999999999999999998887777 7889999999999999999865 7889999999999
Q ss_pred ecCC----CHHHHHHHHHHhcceeEEecHHHHHHHhcCC---CCCCCCCCCceEEEecCCCCCHHHHHHHHHhCC-----
Q 012774 265 MQRF----DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG---STDGYDLSSLETVACGAAPLGKDTIMAFASKFP----- 332 (456)
Q Consensus 265 ~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~----- 332 (456)
.+.+ ++..+++.|+++++|++.++|+++..+.+.. .....+++++|.+++||+++++++.++|.+.++
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~ 319 (590)
T 3kxw_A 240 MSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFR 319 (590)
T ss_dssp CCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCC
T ss_pred eCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCC
Confidence 8765 7899999999999999999999999887753 234567899999999999999999999999873
Q ss_pred CCceEeccCccccccccccccCC-------------------------CCCCCCCccccccCCcEEEEEcCCCCCCCCCC
Q 012774 333 KVVLVQAYGLTESTAGVFRTVGP-------------------------DECRRWGSTGRLSAGLEAKIVDPETGDSLPPG 387 (456)
Q Consensus 333 ~~~i~~~yG~tE~~~~~~~~~~~-------------------------~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g 387 (456)
+.++++.||+||++.+++..... .......++|+|+++ ++|+|++++.+++.|
T Consensus 320 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g 397 (590)
T 3kxw_A 320 KEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFD 397 (590)
T ss_dssp GGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTT
T ss_pred ccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCC
Confidence 45799999999998876643210 111233678999998 889997779999999
Q ss_pred CcceEEEecCCcccccCCCccccccccCC------CC--eeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 388 KEGELSIRGPTIMKGYVGEPEVTSATLLP------DG--WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 388 ~~Gel~i~g~~~~~gy~~~~~~~~~~~~~------~g--~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+.|||+|+|++++.||+++|+.|++.|.. +| ||+|||+|++| ||+|+|.||.||+||++|+||+|.||
T Consensus 398 ~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eI 473 (590)
T 3kxw_A 398 QVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDI 473 (590)
T ss_dssp BCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHH
T ss_pred CEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHH
Confidence 99999999999999999999999999854 24 99999999998 99999999999999999999999774
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-65 Score=515.95 Aligned_cols=405 Identities=19% Similarity=0.198 Sum_probs=318.8
Q ss_pred CCCHHHHhhhcccCCCCCCCCCcEEEECCC--------CceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcH
Q 012774 37 PISAVDYVSSLRATLPWRDDDTVALINSVT--------GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI 108 (456)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~--------~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~ 108 (456)
.+|+.++|.++++++ |+++|+++... ++++||+||.++++++|+.|.+ .|+ +||+|+++++|++++
T Consensus 19 ~~tl~~~l~~~a~~~----p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~g~-~gd~V~i~~~n~~~~ 92 (562)
T 3ite_A 19 TVPPSHYIETWAKTH----PEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIH-ASL-HGRAIAVSLDRSLIA 92 (562)
T ss_dssp CCCTTHHHHHHHHHC----TTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHH-TTC-SSCEEEEECCSCHHH
T ss_pred cCCHHHHHHHHHHHC----CCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHh-cCC-CCCEEEEEeCCCHHH
Confidence 389999999999999 99999987421 2789999999999999999998 898 799999999999999
Q ss_pred HHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-CCeEEEEcCCchhhhhcccCCCcccccc
Q 012774 109 PILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-KHRTILIDSPEFDSMTMSWNSKHELDRA 187 (456)
Q Consensus 109 ~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (456)
++++|||+++|++++|+++.++.+++.+++++++++++|+++......... ...++......+.+....... .....
T Consensus 93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 170 (562)
T 3ite_A 93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQDT--SDILN 170 (562)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCCCTTCEEEETTCHHHHHHHHHSCC--SCCCC
T ss_pred HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccccCccceeecccchhhhhhcccccc--ccccc
Confidence 999999999999999999999999999999999999999987654433211 112222222222222221111 11223
Q ss_pred CCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCC-------CCCCCCcEEEEecchhhHhhHHHHHHHhHhcc
Q 012774 188 KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS-------PKRVSPAVMLFTMPYFHIYGLFFCFRAAALME 260 (456)
Q Consensus 188 ~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~-------~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~ 260 (456)
...++++++++|||||||.||+|+++|+++.+........+ ......+++++..|+.|..++..++.++..|+
T Consensus 171 ~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 250 (562)
T 3ite_A 171 NYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGL 250 (562)
T ss_dssp CCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTC
T ss_pred CCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhccc
Confidence 34568899999999999999999999999987766543221 13567889999999999888888889999999
Q ss_pred eEEEecCCC-HHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEec
Q 012774 261 TAVVMQRFD-LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (456)
Q Consensus 261 ~~~~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~ 339 (456)
++++.+.+. +..+++.++++++|++.++|+++..+... ..+++++|.+++||+++++++.+.|++.+ ++++++.
T Consensus 251 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~ 325 (562)
T 3ite_A 251 CAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQQIWSSSD-RVALVNV 325 (562)
T ss_dssp EEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHHHHHTTCS-SCEEEEE
T ss_pred EEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHHHHHhhCC-CcEEEEe
Confidence 999887543 57788999999999999999999887543 34688999999999999999999999876 8999999
Q ss_pred cCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCC-
Q 012774 340 YGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG- 418 (456)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g- 418 (456)
||+||++..++..... .....+++|+|+++++++|+|+++++.+++|+.|||+|+|+.++.||+++++.+...+ .+|
T Consensus 326 YG~TE~~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~-~~g~ 403 (562)
T 3ite_A 326 YGPTEVTIGCSAGRIL-PDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCD-INGR 403 (562)
T ss_dssp ECCGGGCSCSEEEECC-TTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEE-ETTE
T ss_pred eccchheeeeeeeeec-CCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCcccccccc-CCCC
Confidence 9999998766553322 2335678999999999999998889999999999999999999999999999988765 355
Q ss_pred -eeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 419 -WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 419 -~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
||+|||+|++|+||+|+|.||.||+||++|+||+|.||
T Consensus 404 ~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eI 442 (562)
T 3ite_A 404 KMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEV 442 (562)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEC----------------
T ss_pred EEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHH
Confidence 99999999999999999999999999999999999986
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-65 Score=513.30 Aligned_cols=391 Identities=23% Similarity=0.326 Sum_probs=327.3
Q ss_pred CCHHHHhhhcccCCCCCCCC-CcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDD-TVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~-~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
.|+.++|.++++++ |+ ++|+++. ++++||+||.++++++|..|.. |++|+++++|++++++++|||+
T Consensus 22 ~tl~~~l~~~a~~~----p~d~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~------~~~V~i~~~~~~~~~~~~la~~ 89 (505)
T 3nyq_A 22 SSLFPALSPAPTGA----PADRPALRFG--ERSLTYAELAAAAGATAGRIGG------AGRVAVWATPAMETGVAVVAAL 89 (505)
T ss_dssp --CCTTTSSCCCSG----GGGSEEEEET--TEEEEHHHHHHHHHHHHTTCC---------CEEEECCSSHHHHHHHHHHH
T ss_pred chhHHHHHHHHHhC----CCCCeEEEEC--CeeeeHHHHHHHHHHHHhhccC------CCEEEEEcCCCHHHHHHHHHHH
Confidence 68899999999998 65 9999998 8899999999999999988743 7899999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccCCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEE
Q 012774 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (456)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 196 (456)
++|++++|+++.++.+++.+++++++++++|++++............+.++.. ...........++++++
T Consensus 90 ~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~d~a~ 159 (505)
T 3nyq_A 90 LAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVDVDVR----------ARGAVPEDGADDGDPAL 159 (505)
T ss_dssp HHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCCGGGTTSEEEECCTT----------CCCCCCCCCCCTTSEEE
T ss_pred HhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccchhhccccccccccc----------cccCCCCCCCCCCCeEE
Confidence 99999999999999999999999999999999864211000111222222211 00011223456789999
Q ss_pred EEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhH-HHHHHHhHhcceEEEecCCCHHHHHH
Q 012774 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLK 275 (456)
Q Consensus 197 i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~ 275 (456)
++|||||||.||+|+++|+++.+.+......+ +..+++++++.+|++|..++ ..++.++..|+++++.+.+++..+++
T Consensus 160 i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~ 238 (505)
T 3nyq_A 160 VVYTSGTTGPPKGAVIPRRALATTLDALADAW-QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAR 238 (505)
T ss_dssp EEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHH
T ss_pred EEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHH
Confidence 99999999999999999999999888877776 67889999999999999998 56889999999999999999999999
Q ss_pred HHHHhcceeEEecHHHHHHHhcCCCCC---CCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccc
Q 012774 276 AVEEFRVTHAAVTPPIVVAMSKGGSTD---GYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352 (456)
Q Consensus 276 ~i~~~~~t~~~~~P~~~~~l~~~~~~~---~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~ 352 (456)
.+ ++++|+++++|+++..+++..... ...++++|.+++||+++++++.+++.+.+ +.++++.||+||++..+...
T Consensus 239 ~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~ 316 (505)
T 3nyq_A 239 EL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTETLMNTSVR 316 (505)
T ss_dssp HH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECC
T ss_pred HH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCeeecccchhhcccccccC
Confidence 99 889999999999999998743221 13467899999999999999999999987 89999999999998765542
Q ss_pred cCCCCCCCCCccccccCCcEEEEEcCCCCCCCCC---CCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEc
Q 012774 353 VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPP---GKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYID 429 (456)
Q Consensus 353 ~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~---g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~ 429 (456)
.......+++|+|+++++++|+| +++++++. |+.|||+|+|+.++.||+++++.+.+.|..+|||+|||+|++|
T Consensus 317 --~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~ 393 (505)
T 3nyq_A 317 --ADGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRD 393 (505)
T ss_dssp --TTSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEEC
T ss_pred --CCCCCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEEC
Confidence 23334568899999999999999 67888776 8999999999999999999999999999889999999999999
Q ss_pred cCCcEEEeccc-ccceeeCCeeecCCCC
Q 012774 430 EDGFLFIVDRL-KDLIKYKGYQVLPLLN 456 (456)
Q Consensus 430 ~dg~l~~~GR~-~d~ik~~G~~v~p~e~ 456 (456)
+||+++|.||+ ||+||++|++|+|.||
T Consensus 394 ~dG~l~~~GR~~d~~ik~~G~~v~~~eI 421 (505)
T 3nyq_A 394 PDGYVRIVGRKATDLIKSGGYKIGAGEI 421 (505)
T ss_dssp TTSCEEEEEESSCCCEEETTEEECHHHH
T ss_pred CCccEEEeCCccCceEEeCCEEECHHHH
Confidence 99999999997 5999999999999764
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-64 Score=553.66 Aligned_cols=400 Identities=22% Similarity=0.251 Sum_probs=344.0
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.++++++.++++++ |+++|+++. ++++||+||.++++++|+.|.+ .|+++|++|+|+++++++++++++||++
T Consensus 464 ~~l~~~~~~~~~~~----p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~g~~V~i~~~~s~~~vv~~lailk 536 (1304)
T 2vsq_A 464 KPLTYWFKEAVNAN----PDAPALTYS--GQTLSYRELDEEANRIARRLQK-HGAGKGSVVALYTKRSLELVIGILGVLK 536 (1304)
T ss_dssp CCHHHHHHHHHHHC----TTSEEEESS--SCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC----CCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHh-cCcCCcCEEEEEeCCCHHHHHHHHHHHH
Confidence 68999999999999 999999987 8899999999999999999999 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccC--CeEEEEcCCchhhhhcccCCCccccccCCCCCCEE
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK--HRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVA 195 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 195 (456)
+|++++|++|.++.+++.++++++++++++++......+..+. ...+.++.. ..... ..........+++++
T Consensus 537 aG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~a 610 (1304)
T 2vsq_A 537 AGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQ--TRFEE----QASDPATAIDPNDPA 610 (1304)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSCG--GGGGS----CSSCCCCCCCTTSEE
T ss_pred HCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEeccc--ccccc----ccCCCCCCCCCCCeE
Confidence 9999999999999999999999999999999977654433221 223333221 11111 001122345678999
Q ss_pred EEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecC---CCHHH
Q 012774 196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKM 272 (456)
Q Consensus 196 ~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~---~~~~~ 272 (456)
|++|||||||.||||+++|+++.+. ......+ ...++++++...|+.|..+...++.++..|+++++.+. .++..
T Consensus 611 yiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~ 688 (1304)
T 2vsq_A 611 YIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-AFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTER 688 (1304)
T ss_dssp EEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-CCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHH
T ss_pred EEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-CCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHH
Confidence 9999999999999999999999876 4444444 67889999999999998888889999999999999874 68999
Q ss_pred HHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccc
Q 012774 273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352 (456)
Q Consensus 273 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~ 352 (456)
+++.|+++++|+++++|+++..+.+.. ...++++|.+++|||++++++.++|.+.+++.+++|.||+||++.+++..
T Consensus 689 l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~ 765 (1304)
T 2vsq_A 689 LTDLILQENVNVMFATTALFNLLTDAG---EDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAH 765 (1304)
T ss_dssp HHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEE
T ss_pred HHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheee
Confidence 999999999999999999999997642 22367899999999999999999999988778999999999998876654
Q ss_pred cCCC--CCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCC------CCeeeccc
Q 012774 353 VGPD--ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP------DGWMRTGD 424 (456)
Q Consensus 353 ~~~~--~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~------~g~~~TGD 424 (456)
.... ......++|+|++|++++|+| +.+++++.|+.|||+|+|+++++||+++|+.|+++|.. ++||+|||
T Consensus 766 ~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGD 844 (1304)
T 2vsq_A 766 VVHDLPDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGD 844 (1304)
T ss_dssp ECCCCCSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEE
T ss_pred eccCccccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCC
Confidence 3222 223456899999999999999 77899999999999999999999999999999999853 35999999
Q ss_pred eEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 425 l~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+|++++||+|+|+||+||+||++|+||+|.||
T Consensus 845 l~~~~~dG~l~~~GR~d~qvki~G~rie~~eI 876 (1304)
T 2vsq_A 845 LARWLPDGTIEYAGRIDDQVKIRGHRIELEEI 876 (1304)
T ss_dssp EEEECTTSCEEEEEEGGGEEEETTEEEEHHHH
T ss_pred eEEEcCCCeEEEEcCCCCEEEECCEeeCHHHH
Confidence 99999999999999999999999999999774
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-64 Score=499.99 Aligned_cols=385 Identities=21% Similarity=0.283 Sum_probs=316.4
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECC-----CC--ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSV-----TG--LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI 110 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~-----~~--~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~ 110 (456)
.|+.++|.++++++ |+++|+++.+ ++ +++||+||.++++++|+.|++ .|+ +||+|+|+++|++++++
T Consensus 24 ~tl~~~l~~~a~~~----pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-~g~-~gd~V~i~~~n~~e~~~ 97 (480)
T 3t5a_A 24 RSLPAALRACARLQ----PHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSR-CGS-TGDRVVISAPQGLEYVV 97 (480)
T ss_dssp CCHHHHHHHHHHHS----TTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTT-SSC-TTCEEEEECCSSHHHHH
T ss_pred ccHHHHHHHHHHhC----CCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHh-cCC-CCCEEEEEcCCcHHHHH
Confidence 79999999999999 9999998752 12 789999999999999999998 896 99999999999999999
Q ss_pred HHHHHHHhCCeEecCCC---CCCHHHHHHHhhhcCCeEEEEccchHHHHhccCC--------eEEEEcCCchhhhhcccC
Q 012774 111 LYFSLLSLGVIISPANP---VNTESEISRQIQLSNPVIAFATSSVVHKLAKLKH--------RTILIDSPEFDSMTMSWN 179 (456)
Q Consensus 111 ~~la~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 179 (456)
++|||+++|++++|+++ .++.+++.+++++++++++|+++.....+..... .++.++. ....
T Consensus 98 ~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-- 170 (480)
T 3t5a_A 98 AFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDL-----LDLD-- 170 (480)
T ss_dssp HHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGG-----SCTT--
T ss_pred HHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecc-----cccc--
Confidence 99999999999999999 7788999999999999999999888776653321 1222211 1000
Q ss_pred CCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCC------CcEEEEecchhhHhhH-HHH
Q 012774 180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVS------PAVMLFTMPYFHIYGL-FFC 252 (456)
Q Consensus 180 ~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~------~~~~~~~~p~~~~~g~-~~~ 252 (456)
...........++++++++|||||||.||+|+++|+++.+++......+ .... ++++++++|++|.+++ ..+
T Consensus 171 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~ 249 (480)
T 3t5a_A 171 APNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-FADTDGIPPPNSALVSWLPFYHDMGLVIGI 249 (480)
T ss_dssp CC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-CTTTTTCCCTTEEEEECCCTTSTTHHHHHT
T ss_pred cccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-ccccccCCCCCCeEEEeCCCcCccHHHHHH
Confidence 0112223445678999999999999999999999999988877766555 3444 8999999999999997 567
Q ss_pred HHHhHhcceEEEecCC----CHHHHHHHHHHhcceeEEecHHHHHHHhcC----CCCCCCCCCCceEEEecCCCCCHHHH
Q 012774 253 FRAAALMETAVVMQRF----DLKMMLKAVEEFRVTHAAVTPPIVVAMSKG----GSTDGYDLSSLETVACGAAPLGKDTI 324 (456)
Q Consensus 253 ~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~----~~~~~~~l~~lr~v~~gG~~~~~~~~ 324 (456)
+.++..|+++++.+.. ++..+++.++++++| +.++|+++..++.. ......+++++|.+++||+++++++.
T Consensus 250 ~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~ 328 (480)
T 3t5a_A 250 CAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATI 328 (480)
T ss_dssp HHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHH
T ss_pred HHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHH
Confidence 8999999999998753 899999999999999 78888888877653 22345678999999999999999999
Q ss_pred HHHHHhC-----CCCceEeccCccccccccccccCCCC-----------------------CCCCCccccccCCcEEEEE
Q 012774 325 MAFASKF-----PKVVLVQAYGLTESTAGVFRTVGPDE-----------------------CRRWGSTGRLSAGLEAKIV 376 (456)
Q Consensus 325 ~~~~~~~-----~~~~i~~~yG~tE~~~~~~~~~~~~~-----------------------~~~~~~~G~~~~~~~~~i~ 376 (456)
++|++.+ +++.+++.||+||++.+++....... .....++|+|++ ++++|+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~iv 407 (480)
T 3t5a_A 329 KRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIV 407 (480)
T ss_dssp HHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEE
T ss_pred HHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEE
Confidence 9999988 45689999999999887665432111 123458999999 999999
Q ss_pred cCCCCCCCCCCCcceEEEecCCcccccCCCccccccccC-----------CCCeeeccceEEEccCCcEEEecc
Q 012774 377 DPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLL-----------PDGWMRTGDLCYIDEDGFLFIVDR 439 (456)
Q Consensus 377 d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~-----------~~g~~~TGDl~~~~~dg~l~~~GR 439 (456)
|++++++++.|+.|||+|+|++++.||+++|+.|++.|. .+|||+|||+|++| ||+|+|+||
T Consensus 408 d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 408 DSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp ETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred cCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 977789999999999999999999999999999999985 46799999999996 999999998
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-42 Score=325.94 Aligned_cols=230 Identities=19% Similarity=0.200 Sum_probs=198.4
Q ss_pred CCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecCCCH
Q 012774 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDL 270 (456)
Q Consensus 191 ~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~ 270 (456)
.+++++|+|||||||.||+|++||+++.+++......+ +..++|++++++|++|.+|+..++.++..|+++++.+..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~-- 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT-- 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC--
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc--
Confidence 36889999999999999999999999999988888877 788999999999999999998889999999999888642
Q ss_pred HHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccc
Q 012774 271 KMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVF 350 (456)
Q Consensus 271 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~ 350 (456)
...++.|+++++|++.++|+++..|++... ...+++++|.+++||+++++++.+++++. ++++++.||+||++..+.
T Consensus 113 ~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~ 189 (358)
T 4gs5_A 113 ANPLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVA 189 (358)
T ss_dssp SCTTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEE
T ss_pred ccHHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceee
Confidence 134677899999999999999999988754 33468999999999999999999999875 899999999999988766
Q ss_pred cccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEcc
Q 012774 351 RTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDE 430 (456)
Q Consensus 351 ~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~ 430 (456)
.... .....+.+|.+.||+++.+.+ .|||+++|+.. .+|||+|||+|++|+
T Consensus 190 ~~~~--~~~~~g~~~~~~pgv~~~~~~-----------~Gel~~~g~~~----------------~~g~~~TGDlg~~d~ 240 (358)
T 4gs5_A 190 LKAL--NGPEASELYVFLPGIQYGVDE-----------RGCLHISGAVT----------------NGQTVQTNDLVEIHG 240 (358)
T ss_dssp EEEC--SSTTCCSCEEECTTCEEEECT-----------TSEEEEESGGG----------------TTCCEEEEEEEEECS
T ss_pred cccc--cccccceeeccCCCeEEEecC-----------cCceEEecccc----------------cCcceecCCcccccc
Confidence 5332 223457899999999988754 49999988632 578999999999999
Q ss_pred CCcEEEecccccceeeCCeeecCCCC
Q 012774 431 DGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 431 dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|| ++++||+||+||++|+||+|.||
T Consensus 241 ~g-~~~~GR~dd~Ik~~G~~v~p~eI 265 (358)
T 4gs5_A 241 NA-FQWIGRADNVINSGGVKIVLDQI 265 (358)
T ss_dssp SE-EEEEEEGGGEEEETTEEEEHHHH
T ss_pred Cc-eEEcccccCeEEECCEEECHHHH
Confidence 88 66679999999999999999764
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-41 Score=330.41 Aligned_cols=249 Identities=22% Similarity=0.218 Sum_probs=208.9
Q ss_pred CCC-CCEEEEEcCCCCCCCCchhcccHHHHHHHHHHh---ccCCCCCCCCcEEEEecchhhHhhH-HHHHHHhHhcceEE
Q 012774 189 VCQ-SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS---FASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAV 263 (456)
Q Consensus 189 ~~~-~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~~ 263 (456)
..+ +++++++|||||||.||+|+++|+++....... .... +..+++++++.+|+.|..+. ...+.++..|++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMV-GIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHT-TCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHc-CCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 344 789999999999999999999999997665544 2233 57889999999998655544 56778899999999
Q ss_pred EecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCC--CCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccC
Q 012774 264 VMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY--DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYG 341 (456)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG 341 (456)
+.+.+++..+++.|+++++|+++++|+++..|++....... .++++|.+++||+++++++.+.+++.| ++++++.||
T Consensus 161 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 239 (436)
T 3qov_A 161 PAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSFG 239 (436)
T ss_dssp CCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEE
T ss_pred eCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecCc
Confidence 99888999999999999999999999999999876443333 378999999999999999999999998 899999999
Q ss_pred ccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeee
Q 012774 342 LTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMR 421 (456)
Q Consensus 342 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~ 421 (456)
+||+++.++..... .....|.+.+++.++|+|+++++++++|+.|||+|+|. +.+.+ +++||+
T Consensus 240 ~TE~~~~~~~~~~~----~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~------------~~~~~-~~~~y~ 302 (436)
T 3qov_A 240 MTEMNGPGVAFECQ----EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTL------------DREMM-PLIRYR 302 (436)
T ss_dssp EGGGTEEEEEEECT----TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEES------------SCCSS-CCCSEE
T ss_pred chhhcCCeeEEecC----CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEecc------------CcCCc-eEEEEE
Confidence 99995542222221 12347778889999999988999999999999999983 23344 688999
Q ss_pred ccceEEEccCC------c---EEEecccccceeeCCeeecCCCC
Q 012774 422 TGDLCYIDEDG------F---LFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 422 TGDl~~~~~dg------~---l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|||+|+++++| + ++|.||.||+||++|++|+|.|+
T Consensus 303 TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~ei 346 (436)
T 3qov_A 303 TRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQV 346 (436)
T ss_dssp EEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHH
T ss_pred cCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHH
Confidence 99999999998 6 69999999999999999999764
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=325.29 Aligned_cols=249 Identities=25% Similarity=0.280 Sum_probs=207.4
Q ss_pred CCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhc---cCCCCCCCCcEEEEecch-hhHhhHHHHHHHhHhcceEEE
Q 012774 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF---ASSPKRVSPAVMLFTMPY-FHIYGLFFCFRAAALMETAVV 264 (456)
Q Consensus 189 ~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~---~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~l~~G~~~~~ 264 (456)
..++++++++|||||||.||+|+++|+++........ ..+ +..++|++++.+|+ +|..++...+.++..|+++++
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAA-GARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 4567889999999999999999999999876654332 234 57889999999998 688877778889999999998
Q ss_pred ecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCC--CCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCc
Q 012774 265 MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD--LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342 (456)
Q Consensus 265 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~--l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~ 342 (456)
.+.++++.+++.|+++++|+++++|+++..|++.......+ ++++|.+++||+++++++.+.+++.+ ++++++.||+
T Consensus 166 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~ 244 (437)
T 2y27_A 166 FGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYGL 244 (437)
T ss_dssp CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCCc
Confidence 88889999999999999999999999999998754322322 47899999999999999999999988 8999999999
Q ss_pred cccccc-cccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeee
Q 012774 343 TESTAG-VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMR 421 (456)
Q Consensus 343 tE~~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~ 421 (456)
||+++. +... ... ....++.+.+++.++|+|++++++++.|+.|||+|+|. +.+.| +++||+
T Consensus 245 TE~~g~~~~~~-~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~------------t~~~~-~~~~y~ 307 (437)
T 2y27_A 245 SEVMGPGVASE-CVE---TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL------------TKEAL-PIIRYR 307 (437)
T ss_dssp TTTTEEEEEEC-CTT---TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CCCSEE
T ss_pred hhhcCCeeEEe-cCC---CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC------------CcCCc-hhheee
Confidence 998432 3221 111 11136677789999999988899999999999999973 33445 688999
Q ss_pred ccceEEEcc-CCcE-----EEecccccceeeCCeeecCCCC
Q 012774 422 TGDLCYIDE-DGFL-----FIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 422 TGDl~~~~~-dg~l-----~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|||+|++++ ||++ +|.||.||+||++|++|+|.|+
T Consensus 308 TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~ei 348 (437)
T 2y27_A 308 TRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQI 348 (437)
T ss_dssp EEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHH
T ss_pred cCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHH
Confidence 999999999 6985 8999999999999999999763
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=325.07 Aligned_cols=249 Identities=23% Similarity=0.259 Sum_probs=207.4
Q ss_pred CCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhc---cCCCCCCCCcEEEEecch-hhHhhHHHHHHHhHhcceEEE
Q 012774 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF---ASSPKRVSPAVMLFTMPY-FHIYGLFFCFRAAALMETAVV 264 (456)
Q Consensus 189 ~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~---~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~l~~G~~~~~ 264 (456)
..++++++++|||||||.||+|+++|+++........ ..+ +..++|++++.+|+ +|..++...+.++..|+++++
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAA-GGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 4568889999999999999999999999876554332 234 67889999999998 577777778889999999999
Q ss_pred ecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCC--CCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCc
Q 012774 265 MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD--LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342 (456)
Q Consensus 265 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~--l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~ 342 (456)
.+.++++.+++.|+++++|+++++|+++..|++.......+ ++++|.+++||+++++++.+.+++.+ ++++++.||+
T Consensus 168 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~ 246 (443)
T 2y4o_A 168 MSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYGL 246 (443)
T ss_dssp CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccCc
Confidence 88889999999999999999999999999998754323332 47999999999999999999999988 8999999999
Q ss_pred cccccc-cccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeee
Q 012774 343 TESTAG-VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMR 421 (456)
Q Consensus 343 tE~~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~ 421 (456)
||+++. +... ... .....+.+.+++.++|+|++++++++.|+.|||+|+|. +.+.| +++||+
T Consensus 247 TE~~g~~~~~~-~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~------------t~~~~-p~~~y~ 309 (443)
T 2y4o_A 247 SEVMGPGVACE-CVE---TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL------------TKEAM-PVIRYR 309 (443)
T ss_dssp TTTTEEEEEEE-CTT---TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CCSSEE
T ss_pred hhhcCCeEEec-cCC---CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC------------CcccC-hhheee
Confidence 997443 2221 111 11125667789999999987899999999999999973 23444 678999
Q ss_pred ccceEEEccC-CcE-----EEecccccceeeCCeeecCCCC
Q 012774 422 TGDLCYIDED-GFL-----FIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 422 TGDl~~~~~d-g~l-----~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|||+|+++++ |++ ++.||.||+||++|++|+|.|+
T Consensus 310 TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~ei 350 (443)
T 2y4o_A 310 TRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQI 350 (443)
T ss_dssp EEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHH
T ss_pred cCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHH
Confidence 9999999999 987 8999999999999999999764
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=270.65 Aligned_cols=238 Identities=18% Similarity=0.139 Sum_probs=183.6
Q ss_pred CCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhc---cCCCCCCCCcEEEEecch-hhHhhHHHHHHHhHhcceEEE
Q 012774 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF---ASSPKRVSPAVMLFTMPY-FHIYGLFFCFRAAALMETAVV 264 (456)
Q Consensus 189 ~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~---~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~l~~G~~~~~ 264 (456)
..++++++++|||||||.||+|+++|+++........ ... +..+++++++.+|+ +|..++...+.++..|+ +++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHR-PGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTS-TTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhh-CCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEE
Confidence 4678899999999999999999999999998887433 333 57889999999999 99999977777788999 667
Q ss_pred ecCCCHH-----------------------HHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCH
Q 012774 265 MQRFDLK-----------------------MMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGK 321 (456)
Q Consensus 265 ~~~~~~~-----------------------~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~ 321 (456)
...+++. .+++.|+++++|++.++|+++..|++.......+++++|.+++|||++++
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNL 245 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCH
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCH
Confidence 7777877 88889999999999999999999987643223456789999999999999
Q ss_pred HHHHHHH-HhCCCCceEeccCccccccccccccCCCCCCCCCccccc------cCCcEEEEEcCCCCCCCCCCCcceEEE
Q 012774 322 DTIMAFA-SKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRL------SAGLEAKIVDPETGDSLPPGKEGELSI 394 (456)
Q Consensus 322 ~~~~~~~-~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~------~~~~~~~i~d~~~~~~~~~g~~Gel~i 394 (456)
++.++++ +.||++++++.||+||+++++..+. ..++|+| +++++++|+|+++++++++|+.|||+|
T Consensus 246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~-------~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~v 318 (369)
T 3hgu_A 246 DEIKFIASEILPDCEFSASYGSTSALGVSRSLL-------ITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIV 318 (369)
T ss_dssp HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECC-------BCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEE
T ss_pred HHHHHHHHHhCCCcEEEcccCchhhhcceeccc-------cccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEE
Confidence 9999999 9999999999999999987654311 1158888 999999999976999999999999999
Q ss_pred ecCCcccccCCCccccccccCCCCeeeccceEEEccC--C-------cEEEecccccceeeCCe
Q 012774 395 RGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDED--G-------FLFIVDRLKDLIKYKGY 449 (456)
Q Consensus 395 ~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~d--g-------~l~~~GR~~d~ik~~G~ 449 (456)
++.. ...+ -.+|+|||++.+.+. | .+..++|.+++.++.|.
T Consensus 319 t~l~------------~~~~--l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 319 THLS------------PWAF--YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEE------------TTEE--EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEcC------------cccc--cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 8732 1112 125899999988543 2 35567888888888874
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.6e-09 Score=105.17 Aligned_cols=126 Identities=16% Similarity=0.163 Sum_probs=79.4
Q ss_pred CCC---ceEEEecCCCCCHHHHHHHHHhCCCCceE-eccCccccccccccccCCCCCCCCCcccc-ccCC-cEEEEEcCC
Q 012774 306 LSS---LETVACGAAPLGKDTIMAFASKFPKVVLV-QAYGLTESTAGVFRTVGPDECRRWGSTGR-LSAG-LEAKIVDPE 379 (456)
Q Consensus 306 l~~---lr~v~~gG~~~~~~~~~~~~~~~~~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~d~~ 379 (456)
+++ +..++.||- ..-...++..+++.++. ..|++||+ .+... ..+. ..+...+. .+++ +-.+.++.+
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~-~~p~--~~~~~~~~~L~~~~~ffEFip~~ 368 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSET-TFGIN-LDPL--CKPEDVSYTFMPNMSYFEFIPMD 368 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSC-EEEEC-SCTT--SCGGGCCEEECTTSSEEEEEECS
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccc-eeeec-cCCC--CCcccCceeecCCcEEEEEEecc
Confidence 566 555556664 33334455555678888 89999995 22221 1111 11112222 2233 445666532
Q ss_pred CC--------CCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEcc----CCcEEEecccccceeeC
Q 012774 380 TG--------DSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDE----DGFLFIVDRLKDLIKYK 447 (456)
Q Consensus 380 ~~--------~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~----dg~l~~~GR~~d~ik~~ 447 (456)
+. ..+..|+.+||+|+..+ |.| .|++||++++.. ...+.|.||.++++.+.
T Consensus 369 ~~~~~~~v~l~eVe~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~ 431 (581)
T 4eql_A 369 GGDKNDVVDLEDVKLGCTYEPVVTNFA---GLY--------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSID 431 (581)
T ss_dssp TTCCSSCEEGGGCCTTCEEEEEEECSS---SCC--------------SEECCEEEEEEEEETTEEEEEEEEETTEEECSS
T ss_pred ccCCCcEeCHHHcCCCceEEEEEeecc---cee--------------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEee
Confidence 21 34668999999998753 222 299999999975 35899999999999999
Q ss_pred CeeecCCC
Q 012774 448 GYQVLPLL 455 (456)
Q Consensus 448 G~~v~p~e 455 (456)
|++|++.+
T Consensus 432 Gekl~~~~ 439 (581)
T 4eql_A 432 SDKTNEED 439 (581)
T ss_dssp SCCEEHHH
T ss_pred eeECCHHH
Confidence 99998754
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=98.76 E-value=4.6e-09 Score=103.59 Aligned_cols=126 Identities=17% Similarity=0.144 Sum_probs=78.9
Q ss_pred CCCce---EEEecCCCCCHHHHHHHHHhCCCCceE-eccCccccccccccccCCCCCCCCCcccc-ccCC-cEEEEEcCC
Q 012774 306 LSSLE---TVACGAAPLGKDTIMAFASKFPKVVLV-QAYGLTESTAGVFRTVGPDECRRWGSTGR-LSAG-LEAKIVDPE 379 (456)
Q Consensus 306 l~~lr---~v~~gG~~~~~~~~~~~~~~~~~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~d~~ 379 (456)
++++| .++.||- ..-...++..+++.++. ..|++||+ .+... ..+ .+ .++..+. .+|+ .-.+.++.+
T Consensus 301 WPnlk~l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~-~~p-~~-~p~~~~~~L~p~~~ffEFIP~~ 373 (609)
T 4b2g_A 301 WPNTKYLDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSEC-YFGLN-LNP-MS-KPSEVSYTIMPNMAYFEFLPHE 373 (609)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSC-EEEEC-SCT-TS-CGGGCCEEECTTSCEEEEEEGG
T ss_pred CCCCcEEEEEccCCh---HHHHHHHHHHcCCCccccCcccccce-eeeee-cCC-CC-CcccCceeecCCcEEEEEEecc
Confidence 56754 4455653 22334444444577777 89999996 33322 111 11 1112222 2333 445566432
Q ss_pred CC---------------CCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEcc----CCcEEEeccc
Q 012774 380 TG---------------DSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDE----DGFLFIVDRL 440 (456)
Q Consensus 380 ~~---------------~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~----dg~l~~~GR~ 440 (456)
+. ..++.|+.+||+|+..+ |.| .|++||++++.. ...+.|.||.
T Consensus 374 ~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~~~gR~ 436 (609)
T 4b2g_A 374 HSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYA---GLY--------------RYRVGDILRVTGFHNSAPQFHFVRRK 436 (609)
T ss_dssp GTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECTT---SCC--------------SEEEEEEEEEEEEETTEEEEEEEEET
T ss_pred ccccccccCCCCccccHhHcCCCCeEEEehhhhh---hhh--------------heecCCEEEEeecCCCCcEEEEEEec
Confidence 21 35678999999998653 333 299999999973 3689999999
Q ss_pred ccceeeCCeeecCCC
Q 012774 441 KDLIKYKGYQVLPLL 455 (456)
Q Consensus 441 ~d~ik~~G~~v~p~e 455 (456)
++++++.|++|++.+
T Consensus 437 ~~~l~~~Geki~~~~ 451 (609)
T 4b2g_A 437 NVLLSIDSDKTDEAE 451 (609)
T ss_dssp TCCBCSSSCCBCHHH
T ss_pred CCeEEccccCCCHHH
Confidence 999999999998764
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.3e-08 Score=98.18 Aligned_cols=127 Identities=14% Similarity=0.033 Sum_probs=77.7
Q ss_pred CCCceEE--EecCCCCCHHHHHHHHHhCCCCceE-eccCccccccccccccCCCCCCCCCccc-cccCC-cEEEEEcCCC
Q 012774 306 LSSLETV--ACGAAPLGKDTIMAFASKFPKVVLV-QAYGLTESTAGVFRTVGPDECRRWGSTG-RLSAG-LEAKIVDPET 380 (456)
Q Consensus 306 l~~lr~v--~~gG~~~~~~~~~~~~~~~~~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~~~G-~~~~~-~~~~i~d~~~ 380 (456)
++++++| +++|.. ..-...++..+++.++. ..|++||+ .+.+. ..+. ..++..+ ..+|+ .-.+.++.++
T Consensus 301 WPnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~-~~p~--~~~~~~~~~L~p~~~ffEFiP~~~ 374 (581)
T 4epl_A 301 FPNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEG-WIAAN-VTPR--LSPEEATFAVIPNLGYFEFLPVSE 374 (581)
T ss_dssp CTTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTE-EEEEC-CCTT--SCTTTCCEEECTTSCEEEEEEC--
T ss_pred CCCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceeccce-eeeee-cCCC--CCccccceeecCCcEEEEEEeccc
Confidence 5677533 334422 22334555555678877 89999995 33222 1111 1112222 23333 3345554222
Q ss_pred ----------CCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccC----CcEEEecccccceee
Q 012774 381 ----------GDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDED----GFLFIVDRLKDLIKY 446 (456)
Q Consensus 381 ----------~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~d----g~l~~~GR~~d~ik~ 446 (456)
...++.|+.+||+|+..+ |.| .|++||++++..- ..+.|.||.++++++
T Consensus 375 ~~~~~~~~v~l~eve~G~~YelviTt~~---GL~--------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~ 437 (581)
T 4epl_A 375 TGEGEEKPVGLTQVKIGEEYEVVITNYA---GLY--------------RYRLGDVVKVIGFYNNTPQLKFICRRNLILSI 437 (581)
T ss_dssp -----CCCEEGGGCCTTCEEEEEEESTT---SCS--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCS
T ss_pred ccCCCCceeeHHHcCCCCeEEEEEeecc---cee--------------eEEcCCEEEEecccCCCcEEEEEeecCCeEEe
Confidence 135778999999998753 222 3999999999642 579999999999999
Q ss_pred CCeeecCCC
Q 012774 447 KGYQVLPLL 455 (456)
Q Consensus 447 ~G~~v~p~e 455 (456)
.|++|++.+
T Consensus 438 ~Ge~~~~~~ 446 (581)
T 4epl_A 438 NIDKNTERD 446 (581)
T ss_dssp SSCCBCHHH
T ss_pred eeeECCHHH
Confidence 999998754
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=93.77 E-value=0.36 Score=46.19 Aligned_cols=99 Identities=17% Similarity=0.176 Sum_probs=75.8
Q ss_pred CCCcEEE-EC--CCC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCC--cHHHHHHHHHHhCCeEecCC
Q 012774 56 DDTVALI-NS--VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSI--EIPILYFSLLSLGVIISPAN 126 (456)
Q Consensus 56 p~~~A~~-~~--~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~--~~~~~~la~~~~G~~~v~l~ 126 (456)
++.+|++ +. .+| -.+|.+.+...+..+++.+.. .|+.++|++....+-+. ..+...++++..|+..++++
T Consensus 89 ~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 167 (437)
T 2y27_A 89 QDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA-AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFG 167 (437)
T ss_dssp GGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH-TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCC
T ss_pred hhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH-cCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCC
Confidence 5666654 32 233 258999999888888888877 89999999998887533 23445688889999999876
Q ss_pred CCCCHHHHHHHhhhcCCeEEEEccchHHHH
Q 012774 127 PVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (456)
Q Consensus 127 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 156 (456)
. .+++.+...++..++.+++..+.....+
T Consensus 168 ~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l 196 (437)
T 2y27_A 168 G-GQTEKQVQLIQDFRPDIIMVTPSYMLSI 196 (437)
T ss_dssp S-CCHHHHHHHHHHHCCSEEEECHHHHHHH
T ss_pred C-CCHHHHHHHHHHhCCCEEEECHHHHHHH
Confidence 5 4788999999999999999988776554
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=93.23 E-value=0.43 Score=45.71 Aligned_cols=86 Identities=15% Similarity=0.103 Sum_probs=70.1
Q ss_pred eecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCC--cHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEE
Q 012774 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSI--EIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIA 146 (456)
Q Consensus 69 ~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~--~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 146 (456)
.+|.+.+...+..+++.+.. .|+.++|++....+-+. ..+...++++..|+..++++.. +++.+...++..++.++
T Consensus 111 ~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l 188 (443)
T 2y4o_A 111 GYTARDIDTWANVTARSIRA-AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKII 188 (443)
T ss_dssp EECHHHHHHHHHHHHHHHHH-TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEE
T ss_pred ecCHHHHHHHHHHHHHHHHH-cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEE
Confidence 58999999888888888877 89999999998887543 2344568888999999988654 78889999999999999
Q ss_pred EEccchHHHH
Q 012774 147 FATSSVVHKL 156 (456)
Q Consensus 147 i~~~~~~~~~ 156 (456)
+..+.....+
T Consensus 189 ~~~Ps~~~~l 198 (443)
T 2y4o_A 189 LVTPSYMLNL 198 (443)
T ss_dssp EECHHHHHHH
T ss_pred EECHHHHHHH
Confidence 9988776554
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=93.09 E-value=0.35 Score=46.20 Aligned_cols=98 Identities=19% Similarity=0.097 Sum_probs=76.2
Q ss_pred CCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCC--CcHHHHHHHHHHhCCeEecCCC
Q 012774 57 DTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNS--IEIPILYFSLLSLGVIISPANP 127 (456)
Q Consensus 57 ~~~A~~~~---~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~--~~~~~~~la~~~~G~~~v~l~~ 127 (456)
+.+|++.. .+| -.+|.+.+...+..+++.+.. .++.++|++....+-+ ...+..+++++..|+..++.+.
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 164 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM-VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA 164 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH-cCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC
Confidence 56676532 223 358999999998888888887 8999999999888743 2344567888999999988765
Q ss_pred CCCHHHHHHHhhhcCCeEEEEccchHHHH
Q 012774 128 VNTESEISRQIQLSNPVIAFATSSVVHKL 156 (456)
Q Consensus 128 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 156 (456)
. +++.+...++..++.+++..+.....+
T Consensus 165 ~-~~~~~~~~i~~~~~t~~~~~P~~~~~l 192 (436)
T 3qov_A 165 G-NSKRQIKFISDFKTTALHAIPSYAIRL 192 (436)
T ss_dssp C-CHHHHHHHHHHHTCCEEECCHHHHHHH
T ss_pred C-CHHHHHHHHHHHCCCEEEECHHHHHHH
Confidence 4 678899999999999999988776655
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=86.10 E-value=2.4 Score=39.20 Aligned_cols=99 Identities=12% Similarity=0.026 Sum_probs=68.0
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCc--HHHHHHHHHHhCCeEecCC
Q 012774 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIE--IPILYFSLLSLGVIISPAN 126 (456)
Q Consensus 56 p~~~A~~~---~~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~--~~~~~la~~~~G~~~v~l~ 126 (456)
++.+|.+. +.+| ..+|.+.+...+..++..+.. .|+.++|++..+.+-+.. -....++++..|+.+++.+
T Consensus 90 ~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~ 168 (369)
T 3hgu_A 90 ADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQH-RPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID 168 (369)
T ss_dssp TTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTT-STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC
T ss_pred ccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHh-hCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc
Confidence 56666543 2233 358999999888887777777 899999999988876332 2334455588898665543
Q ss_pred CCCCHH-----------------------HHHHHhhhcCCeEEEEccchHHHHh
Q 012774 127 PVNTES-----------------------EISRQIQLSNPVIAFATSSVVHKLA 157 (456)
Q Consensus 127 ~~~~~~-----------------------~l~~~l~~~~~~~vi~~~~~~~~~~ 157 (456)
.++. .+.+.+++.++.+++..+.....+.
T Consensus 169 --~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~ 220 (369)
T 3hgu_A 169 --IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELL 220 (369)
T ss_dssp --CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHT
T ss_pred --CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 3444 6666888889988888877766654
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=84.91 E-value=4.6 Score=39.69 Aligned_cols=98 Identities=13% Similarity=0.120 Sum_probs=72.6
Q ss_pred CCcEEEECC---CC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHH--HHHHHHHHhCCeEecCCC
Q 012774 57 DTVALINSV---TG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP--ILYFSLLSLGVIISPANP 127 (456)
Q Consensus 57 ~~~A~~~~~---~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~--~~~la~~~~G~~~v~l~~ 127 (456)
+.+|++... +| -.+|.+.+...+......+.. .++.++|++....+-...+- ..+++.+ .|+..+.++
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~- 268 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYG-NQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT- 268 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTS-CCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhc-cCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-
Confidence 778876532 22 359999998877666554433 57889999888877654433 3356777 999888775
Q ss_pred CCCHHHHHHHhhhcCCeEEEEccchHHHHh
Q 012774 128 VNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (456)
Q Consensus 128 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 157 (456)
..+++.+...+++.++.+++..+.....+.
T Consensus 269 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 298 (548)
T 2d1s_A 269 KFDEETFLKTLQDYKCTSVILVPTLFAILN 298 (548)
T ss_dssp CCCHHHHHHHHHHTTEEEEEECHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence 568899999999999999999888777654
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=81.53 E-value=14 Score=35.51 Aligned_cols=97 Identities=10% Similarity=0.014 Sum_probs=72.3
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcH-HHHHHHHHHhCCeEecCCC
Q 012774 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANP 127 (456)
Q Consensus 56 p~~~A~~~~---~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~-~~~~la~~~~G~~~v~l~~ 127 (456)
++.+|++.. .+| -.+|++.+...+..+... +++.++|++...+|-.... +..+++++..|+..+..+
T Consensus 162 ~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~----~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 236 (501)
T 3ipl_A 162 LDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKES----LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD- 236 (501)
T ss_dssp TTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHH----TCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHh----hCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-
Confidence 678887643 222 358999988776665433 5788999998888765432 334677888999988775
Q ss_pred CCCHHHHHHHhhhcCCeEEEEccchHHHHh
Q 012774 128 VNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (456)
Q Consensus 128 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 157 (456)
..+++.+...++..++.++...+.....+.
T Consensus 237 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 266 (501)
T 3ipl_A 237 KFNAEQILTMIKNERITHISLVPQTLNWLM 266 (501)
T ss_dssp SCCHHHHHHHHHHSCCCEEEECHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCcEEEchHHHHHHHH
Confidence 478899999999999999999888776654
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=80.51 E-value=15 Score=35.91 Aligned_cols=96 Identities=17% Similarity=0.107 Sum_probs=70.9
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHH---HHHHHHHhCCeEecC
Q 012774 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI---LYFSLLSLGVIISPA 125 (456)
Q Consensus 56 p~~~A~~~~---~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~---~~la~~~~G~~~v~l 125 (456)
++.+|++.. .+| -.+|.+.+...+...+.. +++.++|++....|-...+-. .+++.+..|+..+..
T Consensus 190 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~----~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 265 (544)
T 3o83_A 190 ADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI----CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA 265 (544)
T ss_dssp TTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHH----TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred ccceEEEEECCCcccCCceEEechHHHHHHHHHHHHH----hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence 677887643 222 359999998777665543 578899999988886655433 368888899988876
Q ss_pred CCCCCHHHHHHHhhhcCCeEEEEccchHHHH
Q 012774 126 NPVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (456)
Q Consensus 126 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 156 (456)
+ ..++..+...++..++.++...+.....+
T Consensus 266 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 295 (544)
T 3o83_A 266 P-NPEPLNCFSIIQRHQVNMASLVPSAVIMW 295 (544)
T ss_dssp S-SCCHHHHHHHHHHHTCCEEEECHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHCCCEEEechHHHHHH
Confidence 5 45788888999999999999888766544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 456 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 2e-81 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 3e-72 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 1e-70 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 1e-69 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 2e-49 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 3e-49 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 1e-40 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 261 bits (669), Expect = 2e-81
Identities = 78/444 (17%), Positives = 151/444 (34%), Gaps = 46/444 (10%)
Query: 54 RDDDTVALI----NSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP 109
+ D A+I ++ +S+ E R A+ L ++ + K D + E
Sbjct: 84 ENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDL-GIKKGDVVAIYMPMVPEAA 142
Query: 110 ILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSP 169
+ + +G + S + ++ I S+ + V + + + D+
Sbjct: 143 VAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDAL 202
Query: 170 EFDSMT---------------------------MSWNSKHELDRAKVCQSDVAAIMYSSG 202
+ ++T + + E + D I+Y+SG
Sbjct: 203 KNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSG 262
Query: 203 TTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETA 262
+TG+ KGV+ T A++F + T + G +
Sbjct: 263 STGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGAT 322
Query: 263 VVM-----QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG--STDGYDLSSLETVACG 315
+M M + V++ +V P + A+ G + +G D SSL +
Sbjct: 323 TLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSV 382
Query: 316 AAPLGKDTIMAFASKF--PKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEA 373
P+ + + K K +V + TE+ + + + GS R G++
Sbjct: 383 GEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQP 442
Query: 374 KIVDPETGDSLPPGKEGELSIRG--PTIMKGYVGEPEVTSATLL--PDGWMRTGDLCYID 429
+VD E G EG L I P + G+ E T +GD D
Sbjct: 443 ALVDNE-GHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRD 501
Query: 430 EDGFLFIVDRLKDLIKYKGYQVLP 453
EDG+ +I R+ D++ G+++
Sbjct: 502 EDGYYWITGRVDDVLNVSGHRLGT 525
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 235 bits (600), Expect = 3e-72
Identities = 137/448 (30%), Positives = 223/448 (49%), Gaps = 28/448 (6%)
Query: 27 PPIDLPPEDAPISAVDYVSSLR-ATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASY 85
P P ED + + R A +P T+A ++ + ++++E+ + LA
Sbjct: 8 PAPFYPLEDGTAGEQLHKAMKRYALVP----GTIAFTDAHIEVNITYAEYFEMSVRLAEA 63
Query: 86 LQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVI 145
++ L+ N V S NS++ + L +GV ++PAN + E E+ + +S P +
Sbjct: 64 MKRY-GLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTV 122
Query: 146 AFATSSVVHKLAKLK------HRTILIDSPEFDSMTMSW------------NSKHELDRA 187
F + + K+ ++ + I++DS S N + +
Sbjct: 123 VFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPES 182
Query: 188 KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA--AVASSFASSPKRVSPAVMLFTMPYFH 245
+A IM SSG+TG KGV L HR + A + + +L +P+ H
Sbjct: 183 FDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHH 242
Query: 246 IYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD 305
+G+F V+M RF+ ++ L++++++++ A + P + +K D YD
Sbjct: 243 GFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYD 302
Query: 306 LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTG 365
LS+L +A G APL K+ A A +F + Q YGLTE+T+ + + P+ + G+ G
Sbjct: 303 LSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAI--LITPEGDDKPGAVG 360
Query: 366 RLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDL 425
++ EAK+VD +TG +L + GEL +RGP IM GYV PE T+A + DGW+ +GD+
Sbjct: 361 KVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDI 420
Query: 426 CYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
Y DED FIVDRLK LIKYKGYQV P
Sbjct: 421 AYWDEDEHFFIVDRLKSLIKYKGYQVAP 448
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 233 bits (596), Expect = 1e-70
Identities = 81/445 (18%), Positives = 157/445 (35%), Gaps = 45/445 (10%)
Query: 54 RDDDTVALI----NSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP 109
+ + A+I G +++ E +A L + K DT V E
Sbjct: 71 KTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAI 130
Query: 110 ILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSP 169
I ++ +G I S + + + +I + + T ++ + I+ D+
Sbjct: 131 ITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDAL 190
Query: 170 E--------------------------FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGT 203
D T K V D ++Y+SG+
Sbjct: 191 RETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGS 250
Query: 204 TGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAV 263
TG KGV + + + V I G + L A
Sbjct: 251 TGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCAT 310
Query: 264 VM-----QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGA 316
++ + ++E +VT V P + + + G + + + L SL +
Sbjct: 311 LVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVG 370
Query: 317 APLGKDTIMAFASKFPK--VVLVQAYGLTESTAGVFRTV-GPDECRRWGSTGRLSAGLEA 373
P+ + ++ K K + +V Y TES + + + G + GS G++A
Sbjct: 371 EPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDA 430
Query: 374 KIVDPETGDSLPPGK-EGELSIRG--PTIMKGYVGEPEVTSATLLP--DGWMRTGDLCYI 428
++DP TG+ L EG L+++ P+ + + T L G+ TGD
Sbjct: 431 VVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAK 490
Query: 429 DEDGFLFIVDRLKDLIKYKGYQVLP 453
D+DG+++I+ R+ D++ G+++
Sbjct: 491 DKDGYIWILGRVDDVVNVSGHRLST 515
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 228 bits (582), Expect = 1e-69
Identities = 101/418 (24%), Positives = 175/418 (41%), Gaps = 24/418 (5%)
Query: 57 DTVALINSVTG--LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS 114
+ TG R +++E +R L L+ + + D L N YF+
Sbjct: 26 RKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRAL-GVGVGDRVATLGFNHFRHLEAYFA 84
Query: 115 LLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH-------KLAKLKHRTILID 167
+ +G ++ ANP + EI+ + + + +++ +L ++H ++ +
Sbjct: 85 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDE 144
Query: 168 SPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA-AVASSFA 226
+ E D +V + + Y++GTTG KGV+ +HR L ++A+S
Sbjct: 145 KAPEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLV 204
Query: 227 SSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAV-VMQRFDLKMMLKAVEEFRVTHA 285
V+L +P FH+ + A + V R D +++ + VT
Sbjct: 205 DGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFT 264
Query: 286 AVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES 345
A P + +A++ + G+ L +L + G + + I F +V Q YGLTE+
Sbjct: 265 AGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVR--QGYGLTET 322
Query: 346 TAGVFRTVGPDEC---------RRWGSTGRLSAGLEAKIVDPETGDSLPPGKE-GELSIR 395
+ V + TG + ++ D E GK GE+ ++
Sbjct: 323 SPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLK 382
Query: 396 GPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
GP I GY G E T + L PDG+ RTGD+ DE+G++ I DRLKDLIK G +
Sbjct: 383 GPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISS 440
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 173 bits (440), Expect = 2e-49
Identities = 78/405 (19%), Positives = 150/405 (37%), Gaps = 24/405 (5%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
+ VA++ ++++ E + N LA + K+ ++ SI++ I ++L
Sbjct: 38 NNVAIVCE--NEQLTYHELNVKANQLARIFIEKG-IGKDTLVGIMMEKSIDLFIGILAVL 94
Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTM 176
G P + + I + S + +VH + ++ + F+ T+
Sbjct: 95 KAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEI---FEEDTI 151
Query: 177 SWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAV 236
L +D+A ++Y+SGTTG KG ML H+ ++ S +
Sbjct: 152 KIREGTNLH-VPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRI 210
Query: 237 MLFTMPYFH--IYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVA 294
F F ++ +F A + + D + + + +T + P VV
Sbjct: 211 GQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVH 270
Query: 295 MSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354
+ D + S++T+ + + + KV + AYG TE+T V
Sbjct: 271 L------DPERILSIQTLITAGSATSPSLVNKW---KEKVTYINAYGPTETTICATTWVA 321
Query: 355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL 414
E + E G+ GEL I G + +GY PE+TS
Sbjct: 322 TKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKF 381
Query: 415 LP------DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
+ + +TGD DG + + R+ + +K +G++V
Sbjct: 382 VDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVEL 426
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 174 bits (440), Expect = 3e-49
Identities = 83/437 (18%), Positives = 152/437 (34%), Gaps = 30/437 (6%)
Query: 42 DYVSSLRATLPWRDD--------------DTVALINSVTGLRVSFSEFTRRTNSLASYLQ 87
+ + R W + D +A+ S+ E R + LA+ Q
Sbjct: 11 ELAETYRKNGCWAGETFGDLLRDRAAKYGDRIAITCG--NTHWSYRELDTRADRLAAGFQ 68
Query: 88 NVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAF 147
+ + + D V N E + F+L LG + A P + SEI+ + +
Sbjct: 69 KL-GIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYI 127
Query: 148 ATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKH----------ELDRAKVCQSDVAAI 197
+ + R + P ++ ++ ++ + +V SDVA +
Sbjct: 128 IPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFL 187
Query: 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAA 257
S G+TG K + TH + ++ S S + +
Sbjct: 188 QLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVL 247
Query: 258 LM-ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGA 316
V+ +E +VT A+ PP+ + S+ DLSSL+ + G
Sbjct: 248 YAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGG 307
Query: 317 APLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIV 376
A + + F + + + E + G+ + + V
Sbjct: 308 AKFSAEAARRVKAVFGCTLQQVFGMAEGLVN--YTRLDDPEEIIVNTQGKPMSPYDESRV 365
Query: 377 DPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFI 436
+ + PG+ G L RGP ++GY E +A+ DG+ RTGD+ + DG++ +
Sbjct: 366 WDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVV 425
Query: 437 VDRLKDLIKYKGYQVLP 453
R KD I G +V
Sbjct: 426 EGRAKDQINRGGEKVAA 442
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 149 bits (377), Expect = 1e-40
Identities = 94/409 (22%), Positives = 164/409 (40%), Gaps = 17/409 (4%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
R D AL GLR++ +E R ++A+ L L V++ NS ++ I
Sbjct: 14 RAPDHCALAVPARGLRLTHAELRARVEAVAARLHADG-LRPQQRVAVVAPNSADVVIAIL 72
Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNP--VIAFATSSVVHKLAKLKHRTILIDSPEF 171
+L LG + + NP +E++ I+ + V + + +I +
Sbjct: 73 ALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDL 132
Query: 172 DSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS-SFASSPK 230
++ ++ + + A I Y+SGTTG K ++ R + V S +
Sbjct: 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLR 192
Query: 231 RVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR-FDLKMMLKAVEEFRVTHAAVTP 289
V+L MP +H+ G F AA ++ V+ F L+ V++ +VT TP
Sbjct: 193 HGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATP 252
Query: 290 PIVVAMSKGGSTDGYD--LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTA 347
+ A++ + G L SL V A + + P V YG TE+
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEK-VNIYGTTEAMN 311
Query: 348 GVFRTVGPDECRRWGSTGRLSAGLEAKIVDP--ETGDSLPPGKEGEL-SIRGPTIMKGYV 404
++ + G+ E +IV + + G+EGEL + GY+
Sbjct: 312 SLY-----MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYL 366
Query: 405 GEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLP 453
+P+ T+ L DGW RT D+ +G + I+ R+ D+I G + P
Sbjct: 367 NQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHP 414
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 456 | |||
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 |
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=2.1e-65 Score=514.94 Aligned_cols=427 Identities=31% Similarity=0.502 Sum_probs=352.9
Q ss_pred eeCCCCCCCCCCCCCCCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEE
Q 012774 22 FHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVL 101 (456)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~ 101 (456)
-++|.|..+.|+ .++.++|.+.+++++ ..|+++|+++...++++||+||.++++++|+.|++ +|+++||+|+++
T Consensus 5 ~~~p~p~~p~~~----~t~~~~l~~~~~~~~-~~P~~~a~~d~~~~~~lTy~el~~~~~~lA~~L~~-~Gi~~Gd~Vai~ 78 (541)
T d1lcia_ 5 KKGPAPFYPLED----GTAGEQLHKAMKRYA-LVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-YGLNTNHRIVVC 78 (541)
T ss_dssp EECCCCSSCCCS----SCHHHHHHHHHHHHH-TSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEEE
T ss_pred CcCCCCCCCCCC----CCHHHHHHHHHHhhC-CCCCeEEEEeCCCCeEeeHHHHHHHHHHHHHHHHH-cCcCCCCEEEEE
Confidence 356666655555 799999998887663 22788899988777899999999999999999998 899999999999
Q ss_pred cCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhc----c--CCeEEEEcCCc-----
Q 012774 102 STNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----L--KHRTILIDSPE----- 170 (456)
Q Consensus 102 ~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~----~--~~~~~~~~~~~----- 170 (456)
++|+++++++++||+++|++++|+++.++.+++.++++.++++++|++++..+.+.+ . ...+++++...
T Consensus 79 ~~ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (541)
T d1lcia_ 79 SENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGF 158 (541)
T ss_dssp CSSCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTB
T ss_pred eCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCCcccccc
Confidence 999999999999999999999999999999999999999999999999987766542 1 22233333211
Q ss_pred --hhhhhccc-----CCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCC--CCCCCcEEEEec
Q 012774 171 --FDSMTMSW-----NSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP--KRVSPAVMLFTM 241 (456)
Q Consensus 171 --~~~~~~~~-----~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~--~~~~~~~~~~~~ 241 (456)
+....... ......+.....++++++++|||||||.||+|+++|+++............ .....+++++.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (541)
T d1lcia_ 159 QSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVV 238 (541)
T ss_dssp EEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECS
T ss_pred chhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccccccccccccc
Confidence 11111110 001112223345688999999999999999999999999877666555441 467789999999
Q ss_pred chhhHhhHHHHHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCH
Q 012774 242 PYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGK 321 (456)
Q Consensus 242 p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~ 321 (456)
|++|..++...+..+..++..+.....+....+..+..+++|.++++|..+..+.........+++++|.+++||+++++
T Consensus 239 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~gG~~~~~ 318 (541)
T d1lcia_ 239 PFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSK 318 (541)
T ss_dssp CTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTCCEEECTTCCCCH
T ss_pred cccccccccccccccccccccccccccccchhHHHHhhhhccccccCccccccccccccccccccccceEEEeccccccc
Confidence 99999999888888899999999888999999999999999999999999999999888777889999999999999999
Q ss_pred HHHHHHHHhCCCCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCccc
Q 012774 322 DTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMK 401 (456)
Q Consensus 322 ~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~ 401 (456)
+..+++.+.++...+++.||+||+++.++.. .....+.+++|+|+|+++++|+|++++++++.|+.|||+|+|++++.
T Consensus 319 ~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~--~~~~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~Gel~v~g~~~~~ 396 (541)
T d1lcia_ 319 EVGEAVAKRFHLPGIRQGYGLTETTSAILIT--PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMS 396 (541)
T ss_dssp HHHHHHHHHTTCSCCBCEECCGGGSSCSEEC--CCC---CCCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCS
T ss_pred ccccccccccCCceeeecCCccccCceEEec--CcccCCCCccccccCCCEEEEEECCCCcCCCCCCeEEEEEccCccCC
Confidence 9999999999667899999999999887763 33445678999999999999999999999999999999999999999
Q ss_pred ccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 402 GYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 402 gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
||+++++.+...+..++||+|||+|++|+||++++.||.||+||++|++|+|.||
T Consensus 397 gY~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~I 451 (541)
T d1lcia_ 397 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAEL 451 (541)
T ss_dssp EETTBHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHH
T ss_pred eeCCChhhhhhcccCCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHH
Confidence 9999999988888889999999999999999999999999999999999999764
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=1.5e-66 Score=530.37 Aligned_cols=414 Identities=19% Similarity=0.220 Sum_probs=340.5
Q ss_pred CCCCCHHHHhh-hcccCCCCCCCCCcEEEECC----CCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHH
Q 012774 35 DAPISAVDYVS-SLRATLPWRDDDTVALINSV----TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP 109 (456)
Q Consensus 35 ~~~~~~~~~l~-~~~~~~~~~~p~~~A~~~~~----~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~ 109 (456)
++.+|+.+.+. +.++.+ ||++|+++.. +.+++||+||.++++++|+.|++ +|+++||+|+++++|+++++
T Consensus 68 ~~~~N~~~n~ldrh~~~~----~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~-~Gv~~Gd~V~i~~~n~~e~i 142 (643)
T d1pg4a_ 68 DGTLNLAANCLDRHLQEN----GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-LGIKKGDVVAIYMPMVPEAA 142 (643)
T ss_dssp TCEECHHHHHTGGGHHHH----TTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEEECCSSHHHH
T ss_pred CChhhHHHHHHHHHHHhC----CCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEecccchHHH
Confidence 67789988766 445666 9999998642 23679999999999999999999 89999999999999999999
Q ss_pred HHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchH-------------HHHhcc---C-CeEEEEcCCc--
Q 012774 110 ILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV-------------HKLAKL---K-HRTILIDSPE-- 170 (456)
Q Consensus 110 ~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-------------~~~~~~---~-~~~~~~~~~~-- 170 (456)
+++|||+++|++++|+++.++++++.+++++++++++|+++... ..+... . ..++++....
T Consensus 143 v~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~ 222 (643)
T d1pg4a_ 143 VAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSD 222 (643)
T ss_dssp HHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCC
T ss_pred HHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCcc
Confidence 99999999999999999999999999999999999999876421 111111 1 1233333211
Q ss_pred ----------hhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEe
Q 012774 171 ----------FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFT 240 (456)
Q Consensus 171 ----------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~ 240 (456)
+....... ..........++++++++|||||||.||+|+++|++++..............++|++++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~ 300 (643)
T d1pg4a_ 223 IDWQEGRDLWWRDLIEKA--SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCT 300 (643)
T ss_dssp CCCCBTTEEEHHHHHTTS--CSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred cccccccchhhhhhhccc--CcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEe
Confidence 11111111 112223345678999999999999999999999999776555433332267889999999
Q ss_pred cchhhHhhHH-HHHHHhHhcceEEEecC----CCHHHHHHHHHHhcceeEEecHHHHHHHhcCCC--CCCCCCCCceEEE
Q 012774 241 MPYFHIYGLF-FCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVA 313 (456)
Q Consensus 241 ~p~~~~~g~~-~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~v~ 313 (456)
+|++|++++. .++.++..|+++++.+. +++..+++.|+++++|+++++|+++..|++... ....++++||.++
T Consensus 301 ~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~ 380 (643)
T d1pg4a_ 301 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILG 380 (643)
T ss_dssp SCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEE
T ss_pred CChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEE
Confidence 9999999984 56788999999999753 488999999999999999999999999987653 3456789999999
Q ss_pred ecCCCCCHHHHHHHHHhCC--CCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcce
Q 012774 314 CGAAPLGKDTIMAFASKFP--KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGE 391 (456)
Q Consensus 314 ~gG~~~~~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Ge 391 (456)
+||+++++++++++.+.++ ++++++.||+||+++.++.........+.+++|+|++|++++|+| ++|++++.|+.||
T Consensus 381 ~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~~~~~g~~Ge 459 (643)
T d1pg4a_ 381 SVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGN 459 (643)
T ss_dssp EESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEE
T ss_pred EEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEecCCCccCCCCCccccccCCCEEEEEC-CCCCCCCCCceEE
Confidence 9999999999999999983 578999999999988766543333445678999999999999999 7799999999999
Q ss_pred EEEec--CCcccccCCCccccccccC--CCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 392 LSIRG--PTIMKGYVGEPEVTSATLL--PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 392 l~i~g--~~~~~gy~~~~~~~~~~~~--~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|+|+| |+++.||+++++.+.+.+. .+|||+|||+|++|+||+|+|+||+||+||++|+||+|.||
T Consensus 460 l~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eI 528 (643)
T d1pg4a_ 460 LVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEI 528 (643)
T ss_dssp EEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHH
T ss_pred EEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHH
Confidence 99999 5688999999987776642 47899999999999999999999999999999999999874
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=6.9e-64 Score=503.05 Aligned_cols=414 Identities=24% Similarity=0.355 Sum_probs=348.2
Q ss_pred CCCCCHHHHhhhcccCCCCCCCCCcEEEECCCC--ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHH
Q 012774 35 DAPISAVDYVSSLRATLPWRDDDTVALINSVTG--LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILY 112 (456)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~--~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~ 112 (456)
+..+||+++|.+.++++ ||++|+++...+ +++||+||.++++++|+.|.+ .|+++||+|+|+++|++++++++
T Consensus 8 ~~~~~l~~~l~~~a~~~----pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~ 82 (534)
T d1v25a_ 8 DEELNLWDFLERAAALF----GRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRA-LGVGVGDRVATLGFNHFRHLEAY 82 (534)
T ss_dssp CCCCCTHHHHHHHHHHS----TTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc----CCCeEEEEecCCceEEEcHHHHHHHHHHHHHHHHH-CCcCCCCEEEEEeCCCHHHHHHH
Confidence 45589999999999999 999999987544 469999999999999999999 89999999999999999999999
Q ss_pred HHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-----CCeEEEEc-CCchhhhhcc-cCCCcccc
Q 012774 113 FSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KHRTILID-SPEFDSMTMS-WNSKHELD 185 (456)
Q Consensus 113 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~-~~~~~~~~ 185 (456)
|||+++|++++|++|.++.+++.++++.+++++++++.......... ....+... .......... ........
T Consensus 83 lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (534)
T d1v25a_ 83 FAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEAD 162 (534)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSCCC
T ss_pred HHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeeccccccccccccccccccc
Confidence 99999999999999999999999999999999999998877665422 12222222 1111111110 00111223
Q ss_pred ccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCC-CCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEE
Q 012774 186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS-PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVV 264 (456)
Q Consensus 186 ~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~ 264 (456)
.....++++++++|||||||.||+|+++|.+++.......... ......+++++.+|++|.+++...+..+..|+++++
T Consensus 163 ~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~g~~~v~ 242 (534)
T d1v25a_ 163 PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVL 242 (534)
T ss_dssp CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEE
T ss_pred ccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhccccccceeeeecceeee
Confidence 3456678899999999999999999999999987665443333 246788999999999999999777778888887777
Q ss_pred ec-CCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCcc
Q 012774 265 MQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLT 343 (456)
Q Consensus 265 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~t 343 (456)
.. .+++..++..+.++++|++.++|+++..+.........+++++|.+++||++++++..+.+++. +.++++.||+|
T Consensus 243 ~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~--~~~i~~~yG~t 320 (534)
T d1v25a_ 243 PGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERM--GVEVRQGYGLT 320 (534)
T ss_dssp CTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECG
T ss_pred ccccccccccchhhhhccccccccCchhhhhhhhhhccccccccceeEEEEecCCCCHHHHHHHHHh--CCeeeeecccc
Confidence 64 5899999999999999999999999999988766666789999999999999999999999876 78999999999
Q ss_pred ccccccccccCCCCC---------CCCCccccccCCcEEEEEcCCCCCCCCC--CCcceEEEecCCcccccCCCcccccc
Q 012774 344 ESTAGVFRTVGPDEC---------RRWGSTGRLSAGLEAKIVDPETGDSLPP--GKEGELSIRGPTIMKGYVGEPEVTSA 412 (456)
Q Consensus 344 E~~~~~~~~~~~~~~---------~~~~~~G~~~~~~~~~i~d~~~~~~~~~--g~~Gel~i~g~~~~~gy~~~~~~~~~ 412 (456)
|++.++......... ...+++|+|++|++++|+| ++++.++. ++.|||+|+|++++.||+++++.+..
T Consensus 321 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~ 399 (534)
T d1v25a_ 321 ETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRS 399 (534)
T ss_dssp GGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHT
T ss_pred ccccceeecccCccccccCccccccccccceeccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhh
Confidence 999887754322211 1246899999999999999 67777765 68899999999999999999999999
Q ss_pred ccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 413 TLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 413 ~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
.|..+|||+|||+|++|+||++++.||.||+||++|+||+|.||
T Consensus 400 ~~~~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eI 443 (534)
T d1v25a_ 400 ALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDL 443 (534)
T ss_dssp TBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHH
T ss_pred hcccCCCCccCceeEECCCccEEEecccccEEEECCEEECHHHH
Confidence 99899999999999999999999999999999999999999764
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-63 Score=511.06 Aligned_cols=418 Identities=19% Similarity=0.248 Sum_probs=335.7
Q ss_pred CCCCCHHHH-hhhcccCCCCCCCCCcEEEECC----CCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHH
Q 012774 35 DAPISAVDY-VSSLRATLPWRDDDTVALINSV----TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP 109 (456)
Q Consensus 35 ~~~~~~~~~-l~~~~~~~~~~~p~~~A~~~~~----~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~ 109 (456)
++.+|+.+. |.++++++ ||++|+++.. +.+++||+||.++++++|++|+.++|+++||+|+++++|+++++
T Consensus 55 ~~~lN~~~n~ldr~a~~~----pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~ 130 (640)
T d1ry2a_ 55 NGQLNACYNCVDRHALKT----PNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAI 130 (640)
T ss_dssp TCEECHHHHHTHHHHTTC----TTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHH
T ss_pred CCchhHHHHHHHHHHhhC----CCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHH
Confidence 566788555 44567777 9999998632 24689999999999999999974389999999999999999999
Q ss_pred HHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchH---------HHHh----cc-CCe-EEEEcCCc----
Q 012774 110 ILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV---------HKLA----KL-KHR-TILIDSPE---- 170 (456)
Q Consensus 110 ~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~----~~-~~~-~~~~~~~~---- 170 (456)
+++|||+++|++++|+++.++++++.++++++++++++++.... ..+. .. ... ........
T Consensus 131 ~~~lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (640)
T d1ry2a_ 131 ITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSV 210 (640)
T ss_dssp HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSC
T ss_pred HHHHHhccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccc
Confidence 99999999999999999999999999999999999999875432 1111 11 111 12121110
Q ss_pred -------hhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecch
Q 012774 171 -------FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPY 243 (456)
Q Consensus 171 -------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~ 243 (456)
....................++++++++|||||||.||||+++|++++.+............++|++++.+|+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 290 (640)
T d1ry2a_ 211 AFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDI 290 (640)
T ss_dssp CCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCT
T ss_pred cccccccccccccccccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccch
Confidence 0000000111112223345668899999999999999999999999877665544433267889999999999
Q ss_pred hhHhhH-HHHHHHhHhcceEEEecC----CCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCC--CCCCCCCceEEEecC
Q 012774 244 FHIYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGA 316 (456)
Q Consensus 244 ~~~~g~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~v~~gG 316 (456)
+|++++ ..++.++..|+++++.+. +++..+++.|+++++|+++++|+++..|.+.... ...++++||.+++||
T Consensus 291 ~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG 370 (640)
T d1ry2a_ 291 GWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVG 370 (640)
T ss_dssp TSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECS
T ss_pred hhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEec
Confidence 999997 567788999999888764 3889999999999999999999999999876543 456799999999999
Q ss_pred CCCCHHHHHHHHHhCC--CCceEeccCccccccccccccCC-CCCCCCCccccccCCcEEEEEcCCCCCCCC-CCCcceE
Q 012774 317 APLGKDTIMAFASKFP--KVVLVQAYGLTESTAGVFRTVGP-DECRRWGSTGRLSAGLEAKIVDPETGDSLP-PGKEGEL 392 (456)
Q Consensus 317 ~~~~~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~-~g~~Gel 392 (456)
+++++++.+++++.++ ...+++.||+||++......... ....+.+++|+|++|++++|+|++++..++ .+..|||
T Consensus 371 ~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel 450 (640)
T d1ry2a_ 371 EPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVL 450 (640)
T ss_dssp SCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEE
T ss_pred ccCcHHHHHHHHHhcCCCcceEEeeecccccccccccccCCCcCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEE
Confidence 9999999999999984 35799999999998776543322 233467899999999999999976666544 4567999
Q ss_pred EEec--CCcccccCCCccccccccC--CCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 393 SIRG--PTIMKGYVGEPEVTSATLL--PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 393 ~i~g--~~~~~gy~~~~~~~~~~~~--~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
++++ |+++.||+++++.+.+.|. .+|||+|||+|++|+||+|+|.||.||+||++|++|+|.||
T Consensus 451 ~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eI 518 (640)
T d1ry2a_ 451 AVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEI 518 (640)
T ss_dssp EESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHH
T ss_pred EEEecCCCcccccccCHHHHHhhhccCCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHH
Confidence 9998 6899999999999888773 35899999999999999999999999999999999999874
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=1.4e-60 Score=476.72 Aligned_cols=398 Identities=19% Similarity=0.220 Sum_probs=336.6
Q ss_pred CCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
..||.++|.++|+++ ||++|+++. ++++||+||.++++++|+.|.+ +|+++||+|+++++|+++++++++||+
T Consensus 22 ~~tl~~l~~~~a~~~----Pd~~Al~~~--~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~gd~Vai~~~n~~~~v~~~la~~ 94 (514)
T d1amua_ 22 DKTIHQLFEEQVSKR----PNNVAIVCE--NEQLTYHELNVKANQLARIFIE-KGIGKDTLVGIMMEKSIDLFIGILAVL 94 (514)
T ss_dssp TCCHHHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhC----CCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHH-cCcCCcCEEEEEeCCCHHHHHHHHHHH
Confidence 379999999999999 999999998 8999999999999999999999 899999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccCCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEE
Q 012774 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (456)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 196 (456)
++|++++|+++.++.+++.++++.++++++|++....+.+.................. .. ..........++++++
T Consensus 95 ~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~p~~~~d~a~ 170 (514)
T d1amua_ 95 KAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIK---IR-EGTNLHVPSKSTDLAY 170 (514)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCSTTT---TS-CCSCCCCCCCTTSEEE
T ss_pred HhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhccccccccccccccc---cc-ccccCCCCCCcccceE
Confidence 9999999999999999999999999999999999988887654332211111111110 00 1122223456789999
Q ss_pred EEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecC---CCHHHH
Q 012774 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKMM 273 (456)
Q Consensus 197 i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~---~~~~~~ 273 (456)
++|||||||.||+|.++|.++..........+ .....+++++.+|++|..++..++.++..|+++++... .+....
T Consensus 171 i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 249 (514)
T d1amua_ 171 VIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-NVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKF 249 (514)
T ss_dssp EEEEC-----CEEEEEESHHHHHHHHHHHHTS-CCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHH
T ss_pred EEEccCCCCCcccccccccccccccccccccc-cccccccccceeccccccccccccccccccccccccccccccchhhh
Confidence 99999999999999999999999998888887 78899999999999999999888889999999888753 567888
Q ss_pred HHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCcccccccccccc
Q 012774 274 LKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353 (456)
Q Consensus 274 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~ 353 (456)
++.+..+.++.+..+|...... ...++.++|.+++||+++++++.+++.+ +..+++.||+||++.+++...
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~G~~~~~~~~~~~~~---~~~~~~~yG~tE~~~~~~~~~ 320 (514)
T d1amua_ 250 EQYINQKEITVITLPPTYVVHL------DPERILSIQTLITAGSATSPSLVNKWKE---KVTYINAYGPTETTICATTWV 320 (514)
T ss_dssp HHHHHHTTCCEEEECHHHHTTS------CTTTCCSCSEEEEESSCCCHHHHHHHTT---TSEEEEEECCGGGSSCSEEEE
T ss_pred hhhhhhhhcccccceeeecccc------cccccccccEEEEecccCCHHHhhhhcc---ceeEEEeeccccCceeeeecc
Confidence 9999999999999998765432 2446889999999999999999887765 678999999999998876544
Q ss_pred CCC-CCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccC------CCCeeeccceE
Q 012774 354 GPD-ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLL------PDGWMRTGDLC 426 (456)
Q Consensus 354 ~~~-~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~------~~g~~~TGDl~ 426 (456)
... ......+.|.+.++..+.+.| ++++.++.|+.|||+|+|+++++||++++..+.+.|. .+|||+|||+|
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g 399 (514)
T d1amua_ 321 ATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQA 399 (514)
T ss_dssp CCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEE
T ss_pred ccccccCcccccccceeeeeEeeec-ccceecCCCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEE
Confidence 322 333456789999999999999 8899999999999999999999999999988777763 36899999999
Q ss_pred EEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 427 YIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 427 ~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
++|+||+|++.||+||+||++|+||+|.+|
T Consensus 400 ~~d~~G~l~i~GR~~d~i~~~G~~i~p~~I 429 (514)
T d1amua_ 400 RWLSDGNIEYLGRIDNQVKIRGHRVELEEV 429 (514)
T ss_dssp EECTTSCEEEEEEGGGEEEETTEEEEHHHH
T ss_pred EECCCCcEEEEecccCEEEECCEEECHHHH
Confidence 999999999999999999999999999763
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=2.8e-59 Score=469.57 Aligned_cols=407 Identities=23% Similarity=0.287 Sum_probs=342.7
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.||+++|.++|+++ ||++|+++. ++++||+||.++++++|+.|.+ +|+++||+|+++++|++++++++|||++
T Consensus 25 ~tl~~~l~~~a~~~----pd~~Al~~~--~~~~Ty~el~~~v~~~A~~L~~-~Gv~~gd~V~i~~~n~~~~~v~~lA~~~ 97 (536)
T d1mdba_ 25 ETFGDLLRDRAAKY----GDRIAITCG--NTHWSYRELDTRADRLAAGFQK-LGIQQKDRVVVQLPNIKEFFEVIFALFR 97 (536)
T ss_dssp CCHHHHHHHHHHHH----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHC----CCCeEEEEC--CEeEcHHHHHHHHHHHHHHHHH-cCcCCcCEEEEEeCCCHHHHHHHHHHHH
Confidence 59999999999999 999999998 7899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHH---------Hh---ccCCeEEEEcCCchhhhhcccCCCcccc
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHK---------LA---KLKHRTILIDSPEFDSMTMSWNSKHELD 185 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~---------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (456)
+|++++|++|.++.+++.++++.++++++++++..... .. .............+..+.... .....
T Consensus 98 ~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 175 (536)
T d1mdba_ 98 LGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLH--TEPVK 175 (536)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGGGCC--CCCCC
T ss_pred hCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccccccchhhcc--cCCcC
Confidence 99999999999999999999999999999987533211 00 111112211122222211111 11223
Q ss_pred ccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhH--HHHHHHhHhcceEE
Q 012774 186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL--FFCFRAAALMETAV 263 (456)
Q Consensus 186 ~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~--~~~~~~l~~G~~~~ 263 (456)
.....++++++++|||||||.||+|++||+++..++......+ ...+++++++..|++|.+++ ...+..+..|.+++
T Consensus 176 ~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~ 254 (536)
T d1mdba_ 176 LPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-WLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (536)
T ss_dssp CCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CCccCccchHHhhhcccccccceeccccccccccccccccccc-ccccccccccccccccccceeecccccccccccccc
Confidence 3456788999999999999999999999999999998887777 68899999999999999987 34445555678888
Q ss_pred EecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCcc
Q 012774 264 VMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLT 343 (456)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~t 343 (456)
..+.+++..++..+++++++.+..+|..+..+..........++++|.+++||+++++...+++.+.+ +......|+.+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~~~~~ 333 (536)
T d1mdba_ 255 LSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMA 333 (536)
T ss_dssp ECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECT
T ss_pred ccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccccccCcceeEEEeccccccccccchhhcc-Cceeeeccccc
Confidence 88889999999999999999999999999998887666667789999999999999999999999998 78888888888
Q ss_pred ccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecc
Q 012774 344 ESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTG 423 (456)
Q Consensus 344 E~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TG 423 (456)
|.+...... ........+++|.|+++....+++.++++.++.++.|||+++|+.++.||++++..+...+..+|||+||
T Consensus 334 ~~~~~~~~~-~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tG 412 (536)
T d1mdba_ 334 EGLVNYTRL-DDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTG 412 (536)
T ss_dssp TSCEEECCT-TSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEE
T ss_pred ccccccccc-ccccccccCCcccCCCCcceEEEEcCCCCeecccccceeecCCCccccccccccccccccccccCccccC
Confidence 876655442 2223334578999987665555555889999999999999999999999999999999999889999999
Q ss_pred ceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 424 DLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 424 Dl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|++++++||+|++.||.||+||++|++|+|.||
T Consensus 413 D~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~I 445 (536)
T d1mdba_ 413 DIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEV 445 (536)
T ss_dssp EEEEECTTSCEEEEEEGGGCEECSSCEECHHHH
T ss_pred ccccccCCCceecCCCcceEEEECCEEECHHHH
Confidence 999999999999999999999999999999764
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=7.5e-55 Score=433.21 Aligned_cols=407 Identities=23% Similarity=0.300 Sum_probs=330.1
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
-|++++|.++++++ ||++|+++.+.++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||++
T Consensus 2 ~ti~~~l~~~a~~~----pd~~al~~~~~~~~~Ty~el~~~~~~~a~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~ 76 (503)
T d3cw9a1 2 QTVNEMLRRAATRA----PDHCALAVPARGLRLTHAELRARVEAVAARLHA-DGLRPQQRVAVVAPNSADVVIAILALHR 76 (503)
T ss_dssp CCHHHHHHHHHHHS----TTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC----CCCeEEEECCCCcEEeHHHHHHHHHHHHHHHHH-cCcCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 38999999999999 999999987667899999999999999999999 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHH--h-c-cCCeEEEEcCCchhhhhcccCCCccccccCCCCCC
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKL--A-K-LKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSD 193 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~--~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (456)
+|++++|+++.++++++.+++++++++++|++....... . . ...+++.+...... ................+++
T Consensus 77 ~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 154 (503)
T d3cw9a1 77 LGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRD--GEPYSYGPPIEDPQREPAQ 154 (503)
T ss_dssp HTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHHHHHTTCCCEEEEHHHHEET--TEECCCSCCCCCCCCCTTS
T ss_pred hCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHHHhhhccccccccchhhhhh--hcccccCCccccccchhhh
Confidence 999999999999999999999999999999986543221 1 1 23344433210000 0000111122334567789
Q ss_pred EEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCC-CCCCCcEEEEecchhhHhhH-HHHHHHhHhcceEEEecCCCHH
Q 012774 194 VAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP-KRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLK 271 (456)
Q Consensus 194 ~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~ 271 (456)
+++++|||||||.||+|.++|+++...+......+. .....++++..+|++|..+. ...+.+...++.+++.+.+++.
T Consensus 155 ~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (503)
T d3cw9a1 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPV 234 (503)
T ss_dssp EEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECSSCCHH
T ss_pred hhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCccccccccccccccccccccccccccccChH
Confidence 999999999999999999999999888877666542 35667899999999888777 4566777888888888999999
Q ss_pred HHHHHHHHhcceeEEecHHHHHHHhcCC--CCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCcccccccc
Q 012774 272 MMLKAVEEFRVTHAAVTPPIVVAMSKGG--STDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV 349 (456)
Q Consensus 272 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~--~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~ 349 (456)
.++..+..++++++..+|..+..+.... ......++++|.+++||++++++....+...+ +..+.+.||++|++..+
T Consensus 235 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~-~~~~~~~yg~~e~~~~~ 313 (503)
T d3cw9a1 235 DALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEAMNSL 313 (503)
T ss_dssp HHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHHHC-CSEEEEEEEETTTEEEE
T ss_pred HhhhhhhhceeeccccccccccccccccccccccccccceEEEEeccccccccccccccccc-cccccccccccccceee
Confidence 9999999999999999999988765532 23345578999999999999999999999998 77899999999998776
Q ss_pred ccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecC-CcccccCCCccccccccCCCCeeeccceEEE
Q 012774 350 FRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP-TIMKGYVGEPEVTSATLLPDGWMRTGDLCYI 428 (456)
Q Consensus 350 ~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~-~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~ 428 (456)
...... .....+.+.+.+.....+.+ ..++.++.|+.|++.+.+. ....+|++++..+.+.| .+|||+|||+|++
T Consensus 314 ~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~-~~g~~~TgD~g~~ 389 (503)
T d3cw9a1 314 YMRQPK--TGTEMAPGFFSEVRIVRIGG-GVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVW 389 (503)
T ss_dssp EEESCS--SSSEEBCCTTCCEEEECTTS-CTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEE
T ss_pred eecccc--ccccccccccccceeeeeec-ccCcccCCCccccccccccccccccccCChhhhHHHh-cCCceeccccccc
Confidence 653322 22223344444444444444 7788999999998877764 55678899999998888 6899999999999
Q ss_pred ccCCcEEEecccccceeeCCeeecCCCC
Q 012774 429 DEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 429 ~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|+||+|++.||+||+||++|++|+|.|+
T Consensus 390 ~~dG~l~~~GR~~d~ik~~G~~v~~~~I 417 (503)
T d3cw9a1 390 TPEGTVRILGRVDDMIISGGENIHPSEI 417 (503)
T ss_dssp CTTSCEEEEEESSCCEEETTEEECHHHH
T ss_pred ccCCeEEeCCCcCCeEEECCEEECHHHH
Confidence 9999999999999999999999999763
|