Citrus Sinensis ID: 012779

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450------
Protein Sequence
MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKVKRAYTPLKMIFISFFQIGNKVCRSRDFMLKQRLSVFLTTIHRSCHTCPIREVLNRIR
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccEEEEEEEEEEEEEEEEEEccEEEEEccccccccEEEcccccHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccEEHHHHHHHccccccccccHHHHccccccccHHHHHccccccccHHHHccccccccHHHHHccccccEEEcccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccEcccEEEEcccccccccEEEEHHHHccEEEEEEEEEEEcccccEEcccccccccccHHHHHHHcc
Coil and Loop (DISEMBL)
MAGIRFSILKSLcsssiypsfkprllhtsnsYFKLARYAEQKHVKLSCAVvnnnydnsrLHSALNSINNqlkvhgfapigktqchkanavssylptsknfcSRRLATfasispflghrsyssffgsktdksteidvpaassgsetdvsnhgivgsdsfdKIKDAWKSVVDGVSytgqkakdelSPQIEQLLdahpylrdvivpVSCYLTGTVLAWVVMPRVLRRFHKYaiqgpvsllsgglsieqvpyeksfwgaledPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGlsmqfskpfslgdtikvkraytpLKMIFISFFQIGNKVCRSRDFMLKQRLSVFLTTIhrschtcpiREVLNRIR
Flexible Loop (DISEMBL)
MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAassgsetdvsnhgivGSDSFDKIKDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSmqfskpfslgdtIKVKRAYTPLKMIFISFFQIGNKVCRSRDFMLKQRLSVFLttihrschtcpirevlnrir
Low Complexity Region (SEG)
MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKVKRAYTPLKMIFISFFQIGNKVCRSRDFMLKQRLSVFLTTIHRSCHTCPIREVLNRIR
Disordered region (IsUnstruct)
***IRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSYSSFF********************************SFDKIKDAWKSVVDGVSYTGQ*******PQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKVKRAYTPLKMIFISFFQIGNKVCRSRDFMLKQRLSVFLTTIHRSCHTCPIREVL****
Disordered Region (DISOPRED)
*********K**********F**RLLHTSNSYFKLARYAEQKHVKLSCAVVNN************SINNQLKVHGFAPIGK**********SYLPTSKNFCSRRLAT********************************************IVGSDSFDKIKDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSI*GLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKVKRAYTPLKMIFISFFQIGNKVCRSRDFMLKQRLSVFLTTIHRSCHTCPIREVLNRI*
Disordered Region (DISEMBL)
MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSYSSFFGSKTDKS***************VSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKVKRAYTPLKMIFISFFQIGNKVCRSRDFMLKQRLSVFLTTIHRSCHTCPIREVLNRIR
Disordered Region (DISPRO)
**GIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGFAPIGKTQ*****AVSSYLPTSKNFCSRRLATFASISPFLG*************************************GSDSFDKIKDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKVKRAYTPLKMIFISFFQIGNKVCRSRDFMLKQRLSVFLTTIHRSCHTCPIREVLNRIR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKVKRAYTPLKMIFISFFQIGNKVCRSRDFMLKQRLSVFLTTIHRSCHTCPIREVLNRIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	456	2.2.26 [Sep-21-2011]
Q8VZL4	497	Mechanosensitive ion chan	yes	no	0.655	0.601	0.603	1e-100
P0AEB5	343	MscS family inner membran	N/A	no	0.219	0.291	0.349	7e-09
P0AEB6	343	MscS family inner membran	N/A	no	0.219	0.291	0.349	7e-09
O28726	283	Uncharacterized MscS fami	yes	no	0.177	0.286	0.271	9e-06
O25170	623	Uncharacterized MscS fami	yes	no	0.236	0.173	0.285	1e-05
Q9ZKG7	623	Uncharacterized MscS fami	yes	no	0.236	0.173	0.276	4e-05
O66994	368	Uncharacterized MscS fami	yes	no	0.379	0.470	0.234	5e-05

>sp|Q8VZL4|MSL1_ARATH Mechanosensitive ion channel protein 1, mitochondrial OS=Arabidopsis thaliana GN=MSL1 PE=2 SV=1

 Score =  365 bits (938), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/308 (60%), Positives = 228/308 (74%), Gaps = 9/308 (2%)

Query: 95  PTSKNFCSR-RLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIV 153
           P+  +F S  RL   A    +LGH SY+  F SK+D     D  +  +   T   +    
Sbjct: 49  PSMISFSSNIRLHNDAKPFNYLGHSSYARAFSSKSD-----DFGSIVASGVTGSGDGNGN 103

Query: 154 GSDSFDKIKDAWKSVVDGVSYTGQKAKD---ELSPQIEQLLDAHPYLRDVIVPVSCYLTG 210
           G+D  +K KD  ++ VD V+ T +K KD   E+ P ++Q LD++PYL+DVIVPVS  +TG
Sbjct: 104 GNDWVEKAKDVLQTSVDAVTETAKKTKDVSDEMIPHVQQFLDSNPYLKDVIVPVSLTMTG 163

Query: 211 TVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFV 270
           T+ AWVVMPR+LRRFH YA+Q    LL  G S E VPYEKSFWGALEDP RYL+TF+AF 
Sbjct: 164 TLFAWVVMPRILRRFHTYAMQSSAKLLPVGFSNEDVPYEKSFWGALEDPARYLVTFIAFA 223

Query: 271 QIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLAL 330
           QI  MVAPTTIA+QY +   +GAVILS VWFL+RWKTNV TR ++++S  GLDREK+L L
Sbjct: 224 QIAAMVAPTTIAAQYFSPTVKGAVILSLVWFLYRWKTNVITRMLSAKSFGGLDREKVLTL 283

Query: 331 DRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKP 390
           D++SSVGLF IGLMA AEACGVAVQSILTVGG+GGVATAFA+RD+LGNVLSGLSMQFS+P
Sbjct: 284 DKVSSVGLFAIGLMASAEACGVAVQSILTVGGVGGVATAFAARDILGNVLSGLSMQFSRP 343

Query: 391 FSLGDTIK 398
           FS+GDTIK
Sbjct: 344 FSMGDTIK 351

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.
Arabidopsis thaliana (taxid: 3702)

>sp|P0AEB5|YNAI_ECOLI MscS family inner membrane protein YnaI OS=Escherichia coli (strain K12) GN=ynaI PE=1 SV=1

 Score = 62.4 bits (150), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 6/106 (5%)

Query: 293 AVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGV 352
           AVIL+   FL     N F +    Q   G D      + RI  + + V+ ++   E  G+
Sbjct: 87  AVILTIKLFLL---INQFEK---QQIKKGRDITSARIMSRIIKITIIVVLVLLYGEHFGM 140

Query: 353 AVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIK 398
           ++  +LT GGIGG+A   A +D+L N  SG+ + F +PFS+GD I+
Sbjct: 141 SLSGLLTFGGIGGLAVGMAGKDILSNFFSGIMLYFDRPFSIGDWIR 186

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0AEB6|YNAI_ECO57 MscS family inner membrane protein YnaI OS=Escherichia coli O157:H7 GN=ynaI PE=3 SV=1

 Score = 62.4 bits (150), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 6/106 (5%)

Query: 293 AVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGV 352
           AVIL+   FL     N F +    Q   G D      + RI  + + V+ ++   E  G+
Sbjct: 87  AVILTIKLFLL---INQFEK---QQIKKGRDITSARIMSRIIKITIIVVLVLLYGEHFGM 140

Query: 353 AVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIK 398
           ++  +LT GGIGG+A   A +D+L N  SG+ + F +PFS+GD I+
Sbjct: 141 SLSGLLTFGGIGGLAVGMAGKDILSNFFSGIMLYFDRPFSIGDWIR 186

Escherichia coli O157:H7 (taxid: 83334)

>sp|O28726|Y1546_ARCFU Uncharacterized MscS family protein AF_1546 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_1546 PE=3 SV=1

 Score = 52.0 bits (123), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 47/81 (58%)

Query: 319 IAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGN 378
           I  + R+++  + ++   G+ ++  +A+  A G+ +  +L  GGI G+   FAS+ V+ N
Sbjct: 47  IDKMKRDQLELMLKVIYFGIIIVAFIAVLPALGLDLSGLLVAGGITGIVLGFASQSVVAN 106

Query: 379 VLSGLSMQFSKPFSLGDTIKV 399
           ++SG+ +   KP  +GD + +
Sbjct: 107 LVSGIFLISEKPIKIGDQVNI 127

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

>sp|O25170|Y415_HELPY Uncharacterized MscS family protein HP_0415 OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=HP_0415 PE=3 SV=1

 Score = 52.0 bits (123), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 4/112 (3%)

Query: 290 WRGAV-ILSFVWF---LHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMA 345
           W GAV I+   W    L +         MA++S     +E +  + ++    +F++ L+ 
Sbjct: 321 WVGAVYIMLLAWLVIALFKGYGEALVTNMATKSTHNFRKEVINLILKVVYFLIFIVALLG 380

Query: 346 LAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTI 397
           + +  G  V +I+   GIGG+A A A +DVL N  + + +     FS GD I
Sbjct: 381 VLKQLGFNVSAIIASLGIGGLAVALAVKDVLANFFASVILLLDNSFSQGDWI 432

Helicobacter pylori (strain ATCC 700392 / 26695) (taxid: 85962)

>sp|Q9ZKG7|Y415_HELPJ Uncharacterized MscS family protein jhp_0969 OS=Helicobacter pylori (strain J99) GN=jhp_0969 PE=3 SV=1

 Score = 49.7 bits (117), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 4/112 (3%)

Query: 290 WRGAV-ILSFVWF---LHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMA 345
           W GAV I+   W    L +         +A++S     +E +  + ++    +F++ L+ 
Sbjct: 321 WVGAVYIMLLAWLVIALFKGYGEALVTNVATKSTHNFRKEVINLILKVVYFLIFIVALLG 380

Query: 346 LAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTI 397
           + +  G  V +I+   GIGG+A A A +DVL N  + + +     FS GD I
Sbjct: 381 VLKQLGFNVSAIIASLGIGGLAVALAVKDVLANFFASVILLLDNSFSQGDWI 432

Helicobacter pylori (strain J99) (taxid: 85963)

>sp|O66994|Y812_AQUAE Uncharacterized MscS family protein aq_812 OS=Aquifex aeolicus (strain VF5) GN=aq_812 PE=3 SV=1

 Score = 49.7 bits (117), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 88/205 (42%), Gaps = 32/205 (15%)

Query: 255 ALEDPVRYLITFMAF-VQIGMMVAPTTIASQYL---AQAWRGAVILSFVWFLHRWKTNVF 310
           A   P  Y I    F + + ++  P   A ++L   +    G  I+ F+   H      F
Sbjct: 73  AFVKPFSYFIVVFGFYLSLLVLEVPKVYADKFLKTFSLLILGWAIIRFLNLFHNKIVEFF 132

Query: 311 TRAMASQSIAGLDREKMLALDRISSVGLFVIGLM--ALAEACGVAVQSILTVGGIGGVAT 368
            +      + G D  + +    +  +  FV+ ++  +L +  GV + +IL   G+ G+A 
Sbjct: 133 VK------VGGKDFAEEVGDFILKILKAFVVVIVGASLLQEWGVNIGAILASVGLLGLAV 186

Query: 369 AFASRDVLGNVLSGLSMQFSKPFSLGDTIKVKRAYTPLKMIFISFFQIGNKVCRSRDFML 428
           + A++D   N+LSGL +   KP  +G+T+KVK     ++        IG +  + R F  
Sbjct: 187 SLAAKDTFENILSGLIILLDKPVKVGETVKVKDFMGSVE-------DIGLRSTKIRTF-- 237

Query: 429 KQRLSVFLTTIHRSCHTCPIREVLN 453
                       +S  T P R+++N
Sbjct: 238 -----------DKSLVTIPNRDIVN 251

Aquifex aeolicus (strain VF5) (taxid: 224324)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	456
225454344	599	PREDICTED: uncharacterized protein LOC10	0.853	0.649	0.621	1e-135
224064055	534	predicted protein [Populus trichocarpa]	0.835	0.713	0.594	1e-123
449527268	521	PREDICTED: mechanosensitive ion channel	0.809	0.708	0.533	1e-113
449432136	521	PREDICTED: mechanosensitive ion channel	0.809	0.708	0.535	1e-112
356520379	539	PREDICTED: uncharacterized MscS family p	0.853	0.721	0.541	1e-110
224127740	387	predicted protein [Populus trichocarpa]	0.532	0.627	0.767	1e-109
356560335	536	PREDICTED: uncharacterized protein LOC10	0.842	0.716	0.538	1e-108
297810151	507	mechanosensitive ion channel domain-cont	0.785	0.706	0.521	1e-101
357504365	548	Mechanosensitive ion channel domain-cont	0.848	0.706	0.524	1e-100
6049873	353	F5I10.9 gene product [Arabidopsis thalia	0.657	0.849	0.605	1e-98

>gi|225454344|ref|XP_002275920.1| PREDICTED: uncharacterized protein LOC100261915 [Vitis vinifera]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 246/396 (62%), Positives = 291/396 (73%), Gaps = 7/396 (1%)

Query: 6   FSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALN 65
           F ILKSLC     P  K     + +S    A+YA Q  +K S A  N +        A N
Sbjct: 65  FPILKSLCD----PISKTHSFRSYDSCLDFAKYAYQVELKSSYASSNRSNHTKESPFAAN 120

Query: 66  SINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSYSSFFG 125
            +N + ++   A    TQC+KA  V+++ PT  N          S+ P   +RSYSS+FG
Sbjct: 121 FVNARFRIPSIASPVDTQCYKAKQVNAFSPTLLNSRFGSSIPLISVIPISKYRSYSSYFG 180

Query: 126 SKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAK---DE 182
           SK DK  E +V AA+  SE DVSN G++GSD  DK+KD W+S VD  +Y GQKAK   DE
Sbjct: 181 SKGDKPQEKEVQAATGMSEPDVSNSGVMGSDWLDKVKDVWQSTVDAAAYRGQKAKETSDE 240

Query: 183 LSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLS 242
           L+P ++QLLD+ PYL+ V++PV C LT T+LAW VMPR+LRRFHKYA QG   LL G L 
Sbjct: 241 LAPYVDQLLDSLPYLKTVVIPVGCTLTATILAWAVMPRLLRRFHKYATQGSAVLLLGSLP 300

Query: 243 IEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFL 302
            EQVPYEKSFW ALEDPVRYLITF++F QIG M+APTTIASQY+  AWRGA+ILSFVWFL
Sbjct: 301 EEQVPYEKSFWSALEDPVRYLITFISFTQIGTMIAPTTIASQYIGPAWRGALILSFVWFL 360

Query: 303 HRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGG 362
           HRWKTNVF RA+A+QS+ GLDREK+LALD++SSVGLFV+GLMALAEACGVAVQSILTVGG
Sbjct: 361 HRWKTNVFARALAAQSVVGLDREKLLALDKLSSVGLFVLGLMALAEACGVAVQSILTVGG 420

Query: 363 IGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIK 398
           IGGVATAFASRD+LGNVLSGLSMQFSKPFSLGDTIK
Sbjct: 421 IGGVATAFASRDILGNVLSGLSMQFSKPFSLGDTIK 456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064055|ref|XP_002301369.1| predicted protein [Populus trichocarpa] gi|222843095|gb|EEE80642.1| predicted protein [Populus trichocarpa]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/404 (59%), Positives = 289/404 (71%), Gaps = 23/404 (5%)

Query: 1   MAGIRFSILK-SLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNY--DN 57
           MAG+R S+LK SLC S    S   + L   N +    R A         A++N  Y  D 
Sbjct: 1   MAGLRLSMLKNSLCIS--INSLSWQSLQFCNVHGSTLRSA--------YAIINRGYYKDE 50

Query: 58  SRLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGH 117
           SRL   L +     KV        +Q ++   V  +  TS N   R    F S+ P L +
Sbjct: 51  SRLAGNLTN----FKVVRSDTCVNSQSYRIEPVRGFSSTSSNVLFRSAVPFISMRPELSY 106

Query: 118 RSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQ 177
           RS+S   G+K DK    +VPA+S G++ DVSN G + SD  +K+K+AW+S VD V+Y+GQ
Sbjct: 107 RSFSWSSGAKVDKPVGNEVPASSGGNDVDVSNSGAIVSDWINKVKEAWQSTVDAVTYSGQ 166

Query: 178 KA---KDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPV 234
           KA    DEL+P  +QLLD+H YL++V+VPV   LTGTV+AWVVMPR+LRRFHKY++Q P 
Sbjct: 167 KAIETSDELTPYAQQLLDSHLYLKNVVVPVGSTLTGTVVAWVVMPRLLRRFHKYSLQTPA 226

Query: 235 SLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAV 294
           +LLSGG+S EQ+PYEKS  GALEDP+RYLITFMAF QI +MVAPTTIASQY+AQ WRGA 
Sbjct: 227 ALLSGGISGEQIPYEKSILGALEDPLRYLITFMAFSQIAVMVAPTTIASQYIAQVWRGAA 286

Query: 295 ILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAV 354
           ILSFVWFLHRWKTNVF R +AS   A +D+EK+L LDR+SSVGLFVIGLMALAEACGVAV
Sbjct: 287 ILSFVWFLHRWKTNVFNRVIAS---ATVDQEKLLTLDRVSSVGLFVIGLMALAEACGVAV 343

Query: 355 QSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIK 398
           QS LTVGGIGGVATAFA++DVLGNVLSGLSMQFSKPFSLGDTIK
Sbjct: 344 QSFLTVGGIGGVATAFAAKDVLGNVLSGLSMQFSKPFSLGDTIK 387

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527268|ref|XP_004170634.1| PREDICTED: mechanosensitive ion channel protein 1, mitochondrial-like [Cucumis sativus]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/403 (53%), Positives = 286/403 (70%), Gaps = 34/403 (8%)

Query: 1   MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRL 60
           MA  RF+     CS   + SFKP        Y K++ Y ++  V     V+N  Y     
Sbjct: 1   MACRRFAA----CS---FQSFKP--------YTKISEYFDR--VLRPNVVLNKRYYKDES 43

Query: 61  HSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTS--KNFCSRRLATFASISPFLGHR 118
           HS   +    L +  +           + + ++LP S  K + +  L  F ++S    +R
Sbjct: 44  HSFKRATVRGLHIPSYG---------TDRIDTFLPASSMKYWNTIPLTCFGNLS---NYR 91

Query: 119 SYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQK 178
           +YSS  G K D S +  VPAASSG E D+SN   VG D  +K+KD W+S VD  S+TGQK
Sbjct: 92  NYSSASGRKADISGDTGVPAASSGVEPDISNPPDVGRDLLEKVKDVWQSAVDAASFTGQK 151

Query: 179 AK---DELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVS 235
           AK   DELSP +++LLD+HPYL++VIVPVS  L  T+LAW+VMPR+L+RFHKY+++ PV+
Sbjct: 152 AKEVSDELSPHVDKLLDSHPYLKNVIVPVSMTLGATLLAWLVMPRLLKRFHKYSMRSPVA 211

Query: 236 LLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVI 295
           ++SG L  E++PYEKSFWGALEDP+RYL+TF AF QIG++VAPT +A ++++QA RGAVI
Sbjct: 212 IISGSLPSEEIPYEKSFWGALEDPLRYLVTFFAFSQIGVIVAPTAVAPEFVSQACRGAVI 271

Query: 296 LSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQ 355
           LS VWF++RWKTNV +RA+A+++ AGLDR+++L LD++SSV LF IGLMALAEA GVAVQ
Sbjct: 272 LSLVWFIYRWKTNVLSRALATKTFAGLDRDRLLTLDKVSSVALFAIGLMALAEASGVAVQ 331

Query: 356 SILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIK 398
           S+LTVGGIGGVATAFA+RD+LGN+LSGL+MQFS+PFSLGDTIK
Sbjct: 332 SMLTVGGIGGVATAFAARDILGNILSGLTMQFSQPFSLGDTIK 374

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432136|ref|XP_004133856.1| PREDICTED: mechanosensitive ion channel protein 1, mitochondrial-like [Cucumis sativus]

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/403 (53%), Positives = 287/403 (71%), Gaps = 34/403 (8%)

Query: 1   MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRL 60
           MA  RF+     CS   + SFKP        Y K++ Y ++  V     V+N  Y     
Sbjct: 1   MACRRFAA----CS---FQSFKP--------YTKISEYFDR--VLRPNVVLNKRYYKDES 43

Query: 61  HSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTS--KNFCSRRLATFASISPFLGHR 118
           HS   +    L +  +        H+   + ++LP S  K + +  L  F ++S    +R
Sbjct: 44  HSFKRATVRGLHIPSYG------THR---IDTFLPASSMKYWNTIPLTCFGNLS---NYR 91

Query: 119 SYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQK 178
           +YSS  G K D S +  VPAASSG E D+SN   VG D  +K+KD W+S VD  S+TGQK
Sbjct: 92  NYSSASGRKADISGDTGVPAASSGVEPDISNPPDVGRDLLEKVKDVWQSAVDAASFTGQK 151

Query: 179 AK---DELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVS 235
           AK   DELSP +++LLD+HPYL++VIVPVS  L  T+LAW+VMPR+L+RFHKY+++ PV+
Sbjct: 152 AKEVSDELSPHVDKLLDSHPYLKNVIVPVSMTLGATLLAWLVMPRLLKRFHKYSMRSPVA 211

Query: 236 LLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVI 295
           ++SG L  E++PYEKSFWGALEDP+RYL+TF AF QIG++VAPT +A ++++QA RGAVI
Sbjct: 212 IISGSLPSEEIPYEKSFWGALEDPLRYLVTFFAFSQIGVIVAPTAVAPEFVSQACRGAVI 271

Query: 296 LSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQ 355
           LS VWF++RWKTNV +RA+A+++ AGLDR+++L LD++SSV LF IGLMALAEA GVAVQ
Sbjct: 272 LSLVWFIYRWKTNVLSRALATKTFAGLDRDRLLTLDKVSSVALFAIGLMALAEASGVAVQ 331

Query: 356 SILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIK 398
           S+LTVGGIGGVATAFA+RD+LGN+LSGL+MQFS+PFSLGDTIK
Sbjct: 332 SMLTVGGIGGVATAFAARDILGNILSGLTMQFSQPFSLGDTIK 374

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520379|ref|XP_003528840.1| PREDICTED: uncharacterized MscS family protein aq_812-like [Glycine max]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/401 (54%), Positives = 278/401 (69%), Gaps = 12/401 (2%)

Query: 1   MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRL 60
           MA +R S ++ L  S+I  SF   L+   + +  +         +L    +++ Y    L
Sbjct: 1   MAAVRSSSVRRL-GSTIQGSFNMELVQHCHYHHSMC----MNLARLPSDSLSHPYYKREL 55

Query: 61  HSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSY 120
             A N  +N         +G +      A  S  PT   +C R    FAS+S  L HR Y
Sbjct: 56  QFAKNRFSNLAS----ESLGSSHHFGTRASVSVKPTFSGYCFRSALPFASMSHVLNHRMY 111

Query: 121 SSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAK 180
           SS  G K  +    +V A S  ++ + +   +VG D  ++IKDAWKSV +  SY G K K
Sbjct: 112 SSSVGDKGSRDGGTEVSAGSGATDINTTGDSVVGGDWAERIKDAWKSVAEAASYAGGKVK 171

Query: 181 ---DELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLL 237
              D+L+P  +QLLD+HPYL  V++PV+  LT T+LAW ++PR+LR+FHKYA QGPVSLL
Sbjct: 172 ETSDDLTPFAQQLLDSHPYLDKVVIPVAGTLTATILAWFLLPRILRKFHKYATQGPVSLL 231

Query: 238 SGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILS 297
              +S+E VPYEKSFWGA+EDPVRYL+TF+AF QIG+MVAPTTI SQYLA  WRGAVI+S
Sbjct: 232 PASVSVEPVPYEKSFWGAMEDPVRYLVTFIAFSQIGVMVAPTTITSQYLAPLWRGAVIVS 291

Query: 298 FVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSI 357
           FVWFLHRWKTN+F R ++SQS+ GLD+EK+LALD+ISS+GLFVIG+MALAEACGVAVQS+
Sbjct: 292 FVWFLHRWKTNIFARTLSSQSLLGLDKEKVLALDKISSIGLFVIGIMALAEACGVAVQSV 351

Query: 358 LTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIK 398
           +TVGGIGGVATAFA++D+LGNV SGLSMQFSKPFS+GDTIK
Sbjct: 352 VTVGGIGGVATAFAAKDILGNVFSGLSMQFSKPFSIGDTIK 392

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127740|ref|XP_002320152.1| predicted protein [Populus trichocarpa] gi|222860925|gb|EEE98467.1| predicted protein [Populus trichocarpa]

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/249 (76%), Positives = 222/249 (89%), Gaps = 6/249 (2%)

Query: 153 VGSDSFDKIKDAWKSVVDGVSYTGQKAKD---ELSPQIEQLLDAHPYLRDVIVPVSCYLT 209
           +GSD  DK+K+AW+S V  V+Y+ QKAK+   EL+P ++QLLD+HPYL++V+VPV   LT
Sbjct: 2   IGSDWIDKVKEAWQSAVHAVTYSEQKAKEISAELTPYVQQLLDSHPYLKNVVVPVGWTLT 61

Query: 210 GTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAF 269
           GTV+AWVVMPR+LRRFHKY++Q PV+LLSGG S EQ+ YEKS WGALEDP+RY+ITFMAF
Sbjct: 62  GTVVAWVVMPRLLRRFHKYSLQTPVALLSGGTSGEQISYEKSIWGALEDPLRYVITFMAF 121

Query: 270 VQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLA 329
            QI +MVAPTTIASQY+AQAWRGAVILSFVWFLHRWKTNVF R +AS   A +DREK+L 
Sbjct: 122 SQIAVMVAPTTIASQYIAQAWRGAVILSFVWFLHRWKTNVFNRVIAS---ATVDREKLLT 178

Query: 330 LDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSK 389
           LDR+SSVGLFVIG+MALAEACGVAVQSILTVGGIGGVATAFA++DVLGNVLSGLSMQFSK
Sbjct: 179 LDRVSSVGLFVIGVMALAEACGVAVQSILTVGGIGGVATAFAAKDVLGNVLSGLSMQFSK 238

Query: 390 PFSLGDTIK 398
           PFSLGDTIK
Sbjct: 239 PFSLGDTIK 247

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560335|ref|XP_003548448.1| PREDICTED: uncharacterized protein LOC100814954 [Glycine max]

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/403 (53%), Positives = 274/403 (67%), Gaps = 19/403 (4%)

Query: 1   MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRL 60
           MA +R S ++ L  S+I  SF   L+H S     LAR+             ++++++   
Sbjct: 1   MAAVRSSSVRRL-GSTIKGSFSMELVHHSMC-MNLARFP------------SDSFNDPYY 46

Query: 61  HSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISP-FLGHRS 119
              L    NQ        +G +      A     PT   +C      FAS+S   L  R 
Sbjct: 47  KRELQFSKNQFSNLASESLGSSHHFGTRANVLVKPTFSGYCFWSSLPFASMSNHVLNRRM 106

Query: 120 YSSF-FGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQK 178
           YSS   G K  +    +V A S  S+ +     +VG D  ++IKDAWKSV +  SY G K
Sbjct: 107 YSSSSVGDKGSRDGGTEVSAGSGASDMNTGGDSVVGGDWAERIKDAWKSVAEAASYAGDK 166

Query: 179 AK---DELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVS 235
            K   D+L+P  +QLLD+HPYL  V++PV   LT T++AW ++PR+LR+FHKYA+QGPVS
Sbjct: 167 VKETSDDLTPYAQQLLDSHPYLDKVVIPVGGTLTATIIAWFLLPRILRKFHKYAMQGPVS 226

Query: 236 LLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVI 295
           LL   ++ E VPYEKSFWGA+EDPVRYL+TF+AF QIG+MVAPTTI SQYLA  WRGAVI
Sbjct: 227 LLPASVAGEPVPYEKSFWGAMEDPVRYLVTFIAFSQIGVMVAPTTITSQYLAPVWRGAVI 286

Query: 296 LSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQ 355
           +SFVWFLHRWKTNVF R+++SQS+ GLDREK+ ALD+ISS+GLFVIG+MALAEACGVAVQ
Sbjct: 287 VSFVWFLHRWKTNVFARSLSSQSLLGLDREKVFALDKISSIGLFVIGIMALAEACGVAVQ 346

Query: 356 SILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIK 398
           SI+TVGGIGGVATAFA++D+LGNV SGLSMQFSKPFS+GDTIK
Sbjct: 347 SIVTVGGIGGVATAFATKDILGNVFSGLSMQFSKPFSIGDTIK 389

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810151|ref|XP_002872959.1| mechanosensitive ion channel domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297318796|gb|EFH49218.1| mechanosensitive ion channel domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/401 (52%), Positives = 261/401 (65%), Gaps = 43/401 (10%)

Query: 1   MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRL 60
           MAG+R S+LKSL   SI  S KP     S S F      ++K    S  ++NN++  S  
Sbjct: 1   MAGVRLSLLKSL-QRSINSSSKPHSAAKSLSGF------QKKEPYASFNLLNNSHARSF- 52

Query: 61  HSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSY 120
                         G  P+   +   +    + L  +K F         SI PFLGH SY
Sbjct: 53  ------------TCGINPLDGPKASPSMVSFTRLHNAKPFN-------YSI-PFLGHSSY 92

Query: 121 SSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAK 180
           +  F SK+D      V     G+  D+        D  +K KD  ++ VD VS T +K K
Sbjct: 93  ARAFSSKSDGI----VSPGGDGNGNDI--------DWVEKAKDVLQTSVDAVSETARKTK 140

Query: 181 ---DELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLL 237
              DE+ P ++Q LD++PYL++VIVP+S  +TGT+ AW+VMPR+LRRFH YA+Q    LL
Sbjct: 141 EASDEMIPHVQQFLDSNPYLKEVIVPISLTMTGTLFAWLVMPRILRRFHTYALQSSAKLL 200

Query: 238 SGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILS 297
             G S E VPYEKSFWGALEDP RYL+TF+AF QI  MVAPTTIA+QY +   +GAVILS
Sbjct: 201 PVGFSNEDVPYEKSFWGALEDPARYLVTFVAFAQIAAMVAPTTIAAQYFSPTVKGAVILS 260

Query: 298 FVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSI 357
            VWFL+RWKTNV TR ++++S  GLDREK+L LD++SSVGLF IGLMA AEACGVAVQSI
Sbjct: 261 LVWFLYRWKTNVITRMLSAKSFGGLDREKVLTLDKVSSVGLFAIGLMASAEACGVAVQSI 320

Query: 358 LTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIK 398
           LTVGG+GGVATAFA+RD+LGNVLSGLSMQFS+PFS+GDTIK
Sbjct: 321 LTVGGVGGVATAFAARDILGNVLSGLSMQFSRPFSMGDTIK 361

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357504365|ref|XP_003622471.1| Mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein [Medicago truncatula] gi|355497486|gb|AES78689.1| Mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein [Medicago truncatula]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/414 (52%), Positives = 268/414 (64%), Gaps = 27/414 (6%)

Query: 1   MAGIRFSILKSLCSS-SIYPSFKPRLLHTS-NSYFKLARYAEQKHVKLSCAVVNNNYDNS 58
           M+ IRFS +KSL SS   + +F  +  H++ N    LAR +       S     N + + 
Sbjct: 1   MSAIRFSHVKSLHSSIKGFSNFNVQNYHSNPNGSLNLARISSFCTDFSSRGYSKNGFKSP 60

Query: 59  RLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPF---- 114
           ++ +             F  +G    H+    ++   T + F S R+       PF    
Sbjct: 61  KMFAETE----------FRNLGSLSGHRGFKFNAAFET-QGFSSPRVCFSVVNIPFASNS 109

Query: 115 -----LGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHG--IVGSDSFDKIKDAWKS 167
                L  R YSS  G +  K+ E +V   +  S+      G   V  D  D++KD WKS
Sbjct: 110 MMTNGLSSRMYSSGLGGEGSKNGETEVGVGTGVSDVKGGGGGDSFVSGDLVDRMKDTWKS 169

Query: 168 VVDGVSYTGQKAK---DELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRR 224
           VV+ VSY G K K   D ++P  +Q LD+HPYL  V+VPV   LT T++AW ++PR+LR+
Sbjct: 170 VVEAVSYAGDKVKEGSDGVTPYAQQFLDSHPYLNMVVVPVGGTLTATLVAWFILPRILRK 229

Query: 225 FHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQ 284
           FHKY +Q PVSL    LS E VPYEKSFWGA+EDPVRYL+TF+AF QI  MVAPT IASQ
Sbjct: 230 FHKYGMQSPVSLFQVSLSGEPVPYEKSFWGAMEDPVRYLVTFLAFSQIAAMVAPTAIASQ 289

Query: 285 YLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLM 344
           YL   WRGAVILSFVWFLHRWKTNVF R + SQS+ GLDREKMLALD+ISS+GLFVIG+M
Sbjct: 290 YLVPTWRGAVILSFVWFLHRWKTNVFARTLTSQSVLGLDREKMLALDKISSIGLFVIGIM 349

Query: 345 ALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIK 398
           ALAEACGVAVQSI+TVGG+GGVATAFA+RDVLGNV SGLSMQFSKPFS+GDTIK
Sbjct: 350 ALAEACGVAVQSIVTVGGVGGVATAFAARDVLGNVFSGLSMQFSKPFSIGDTIK 403

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6049873|gb|AAF02788.1|AF195115_8 F5I10.9 gene product [Arabidopsis thaliana] gi|2252831|gb|AAB62830.1| A_IG005I10.9 gene product [Arabidopsis thaliana] gi|7267116|emb|CAB80787.1| AT4g00290 [Arabidopsis thaliana]

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 187/309 (60%), Positives = 229/309 (74%), Gaps = 9/309 (2%)

Query: 95  PTSKNFCSR-RLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIV 153
           P+  +F S  RL   A    +LGH SY+  F SK+D     D  +  +   T   +    
Sbjct: 49  PSMISFSSNIRLHNDAKPFNYLGHSSYARAFSSKSD-----DFGSIVASGVTGSGDGNGN 103

Query: 154 GSDSFDKIKDAWKSVVDGVSYTGQKAKD---ELSPQIEQLLDAHPYLRDVIVPVSCYLTG 210
           G+D  +K KD  ++ VD V+ T +K KD   E+ P ++Q LD++PYL+DVIVPVS  +TG
Sbjct: 104 GNDWVEKAKDVLQTSVDAVTETAKKTKDVSDEMIPHVQQFLDSNPYLKDVIVPVSLTMTG 163

Query: 211 TVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFV 270
           T+ AWVVMPR+LRRFH YA+Q    LL  G S E VPYEKSFWGALEDP RYL+TF+AF 
Sbjct: 164 TLFAWVVMPRILRRFHTYAMQSSAKLLPVGFSNEDVPYEKSFWGALEDPARYLVTFIAFA 223

Query: 271 QIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLAL 330
           QI  MVAPTTIA+QY +   +GAVILS VWFL+RWKTNV TR ++++S  GLDREK+L L
Sbjct: 224 QIAAMVAPTTIAAQYFSPTVKGAVILSLVWFLYRWKTNVITRMLSAKSFGGLDREKVLTL 283

Query: 331 DRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKP 390
           D++SSVGLF IGLMA AEACGVAVQSILTVGG+GGVATAFA+RD+LGNVLSGLSMQFS+P
Sbjct: 284 DKVSSVGLFAIGLMASAEACGVAVQSILTVGGVGGVATAFAARDILGNVLSGLSMQFSRP 343

Query: 391 FSLGDTIKV 399
           FS+GDTIKV
Sbjct: 344 FSMGDTIKV 352

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	456
TAIR|locus:2126061	497	AT4G00290 [Arabidopsis thalian	0.728	0.668	0.571	2.1e-93
TAIR|locus:505006411	263	AT4G00234 "AT4G00234" [Arabido	0.561	0.973	0.565	1.1e-71
UNIPROTKB|P0AEB5	343	ynaI "mechanosensitive channel	0.219	0.291	0.339	3.5e-08
UNIPROTKB|Q83CN5	383	CBU_1075 "Mechanosensitive ion	0.486	0.579	0.239	7.6e-08
TIGR_CMR|CBU_1075	383	CBU_1075 "membrane protein, pu	0.486	0.579	0.239	7.6e-08
UNIPROTKB|Q74CP0	364	mscS-1 "Small-conductance mech	0.232	0.291	0.254	1.2e-05
TIGR_CMR|GSU_1633	364	GSU_1633 "conserved hypothetic	0.232	0.291	0.254	1.2e-05
UNIPROTKB|Q74AJ7	348	GSU2357 "Mechanosensitive ion	0.300	0.393	0.260	2.3e-05
TIGR_CMR|GSU_2357	348	GSU_2357 "conserved hypothetic	0.300	0.393	0.260	2.3e-05
TIGR_CMR|NSE_0847	337	NSE_0847 "mechanosensitive ion	0.129	0.175	0.4	0.00078

TAIR|locus:2126061 AT4G00290 [Arabidopsis thaliana (taxid:3702)]

 Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
 Identities = 200/350 (57%), Positives = 244/350 (69%)

Query:    62 SALNSINNQLKVHGFAPI--GKTQCH-KANAVSSYL------PTSKNFCSR-RLATFASI 111
             S L SI   +K H  A    G    H +A    + L      P+  +F S  RL   A  
Sbjct:     7 SLLKSIQRSIKPHATAKSCSGLLNSHARAFTCGNLLDGPKASPSMISFSSNIRLHNDAKP 66

Query:   112 SPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDG 171
               +LGH SY+  F SK+D    I V +  +GS     N    G+D  +K KD  ++ VD 
Sbjct:    67 FNYLGHSSYARAFSSKSDDFGSI-VASGVTGSGDGNGN----GNDWVEKAKDVLQTSVDA 121

Query:   172 VSYTGQKAKD---ELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKY 228
             V+ T +K KD   E+ P ++Q LD++PYL+DVIVPVS  +TGT+ AWVVMPR+LRRFH Y
Sbjct:   122 VTETAKKTKDVSDEMIPHVQQFLDSNPYLKDVIVPVSLTMTGTLFAWVVMPRILRRFHTY 181

Query:   229 AIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQ 288
             A+Q    LL  G S E VPYEKSFWGALEDP RYL+TF+AF QI  MVAPTTIA+QY + 
Sbjct:   182 AMQSSAKLLPVGFSNEDVPYEKSFWGALEDPARYLVTFIAFAQIAAMVAPTTIAAQYFSP 241

Query:   289 AWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAE 348
               +GAVILS VWFL+RWKTNV TR ++++S  GLDREK+L LD++SSVGLF IGLMA AE
Sbjct:   242 TVKGAVILSLVWFLYRWKTNVITRMLSAKSFGGLDREKVLTLDKVSSVGLFAIGLMASAE 301

Query:   349 ACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIK 398
             ACGVAVQSILTVGG+GGVATAFA+RD+LGNVLSGLSMQFS+PFS+GDTIK
Sbjct:   302 ACGVAVQSILTVGGVGGVATAFAARDILGNVLSGLSMQFSRPFSMGDTIK 351

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:505006411 AT4G00234 "AT4G00234" [Arabidopsis thaliana (taxid:3702)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 151/267 (56%), Positives = 191/267 (71%)

Query:    99 NFCSR-RLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDS 157
             +F S  RL + A    +L H SY+  F SK+D    I V +  +GS     N    G+D 
Sbjct:     3 SFSSNIRLHSDAKPFNYLSHSSYARAFSSKSDDFGSI-VASGVTGSGD--GN----GNDW 55

Query:   158 FDKIKDAWKSVVDGVSYTGQKAKD---ELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLA 214
              +K KD  ++ V+ V+ T +K KD   E+ P ++Q LD++PYL+DVIVPVS  +TGT+ A
Sbjct:    56 VEKAKDVVQTSVNAVAETAKKTKDVSDEMIPHVQQFLDSNPYLKDVIVPVSLTVTGTLFA 115

Query:   215 WVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGM 274
             W+VMPR+LRRFH YA+Q    LL  G S E +PYEKSFWGALEDP RYL+TF+AF QI  
Sbjct:   116 WIVMPRILRRFHTYAMQSSAKLLPVGFSNEDIPYEKSFWGALEDPARYLVTFIAFAQIAA 175

Query:   275 MVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRIS 334
             MVAPTTIA+QY +   +GAVILS VWFL+RWKTNV TR ++++S  GLDR+K+L LD++S
Sbjct:   176 MVAPTTIAAQYFSPTVKGAVILSVVWFLYRWKTNVITRMLSAKSFGGLDRDKVLTLDKVS 235

Query:   335 SVGLFVIGLMALAEACGVAVQSILTVG 361
             SVGLF IGLMA AEACGVAVQSILTVG
Sbjct:   236 SVGLFAIGLMASAEACGVAVQSILTVG 262

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|P0AEB5 ynaI "mechanosensitive channel YnaI monomer" [Escherichia coli K-12 (taxid:83333)]

 Score = 154 (59.3 bits), Expect = 3.5e-08, P = 3.5e-08
 Identities = 36/106 (33%), Positives = 57/106 (53%)

Query:   293 AVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGV 352
             AVIL+   FL     N F +    +   G D      + RI  + + V+ ++   E  G+
Sbjct:    87 AVILTIKLFL---LINQFEKQQIKK---GRDITSARIMSRIIKITIIVVLVLLYGEHFGM 140

Query:   353 AVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIK 398
             ++  +LT GGIGG+A   A +D+L N  SG+ + F +PFS+GD I+
Sbjct:   141 SLSGLLTFGGIGGLAVGMAGKDILSNFFSGIMLYFDRPFSIGDWIR 186

GO:0055085 "transmembrane transport" evidence=IEA

GO:0071470 "cellular response to osmotic stress" evidence=IGI

GO:0005887 "integral to plasma membrane" evidence=RCA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008381 "mechanically-gated ion channel activity" evidence=IGI;ISS

GO:0006811 "ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q83CN5 CBU_1075 "Mechanosensitive ion channel" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 152 (58.6 bits), Expect = 7.6e-08, P = 7.6e-08
 Identities = 57/238 (23%), Positives = 110/238 (46%)

Query:   190 LLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYE 249
             LL+ H  +  +++ +      + L W++  R+L RF +   +  V L +   ++ Q P +
Sbjct:     4 LLNTHNSIIKIVLLLIIGSIASFLEWLLYRRLLPRFQR---RQRVWLQAFLQALHQ-PLQ 59

Query:   250 KSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNV 309
                W  +   V  ++  + F   G   A   ++S  L   +   VI  F     R+  + 
Sbjct:    60 VYIWVIILSFVASILATLFFFNGGFTDA---LSSTRLI--FTLVVIFWFAMRFIRYLEDG 114

Query:   310 FTRAMASQSIAGL-DREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVAT 368
              T   A Q +  + D   + A+ +++ V +    L+ L +  G+ + ++L  GG+G    
Sbjct:   115 MTH-QARQKVGKVSDETSVHAIAQLTRVVIIAFVLLMLLQTIGIKISALLAFGGVGVAVI 173

Query:   369 AFASRDVLGNVLSGLSMQFSKPFSLGDTIKVKRAYTPLKMIFISFFQIGNKVCRSRDF 426
              FA++D LGN   G+ + + +PFS+GD I+     +P + I  +   IG ++ R R F
Sbjct:   174 GFAAKDTLGNFFGGMMIYWDRPFSVGDWIR-----SPDRQIEGTVENIGWRLTRIRTF 226

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_1075 CBU_1075 "membrane protein, putative" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 152 (58.6 bits), Expect = 7.6e-08, P = 7.6e-08
 Identities = 57/238 (23%), Positives = 110/238 (46%)

Query:   190 LLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYE 249
             LL+ H  +  +++ +      + L W++  R+L RF +   +  V L +   ++ Q P +
Sbjct:     4 LLNTHNSIIKIVLLLIIGSIASFLEWLLYRRLLPRFQR---RQRVWLQAFLQALHQ-PLQ 59

Query:   250 KSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNV 309
                W  +   V  ++  + F   G   A   ++S  L   +   VI  F     R+  + 
Sbjct:    60 VYIWVIILSFVASILATLFFFNGGFTDA---LSSTRLI--FTLVVIFWFAMRFIRYLEDG 114

Query:   310 FTRAMASQSIAGL-DREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVAT 368
              T   A Q +  + D   + A+ +++ V +    L+ L +  G+ + ++L  GG+G    
Sbjct:   115 MTH-QARQKVGKVSDETSVHAIAQLTRVVIIAFVLLMLLQTIGIKISALLAFGGVGVAVI 173

Query:   369 AFASRDVLGNVLSGLSMQFSKPFSLGDTIKVKRAYTPLKMIFISFFQIGNKVCRSRDF 426
              FA++D LGN   G+ + + +PFS+GD I+     +P + I  +   IG ++ R R F
Sbjct:   174 GFAAKDTLGNFFGGMMIYWDRPFSVGDWIR-----SPDRQIEGTVENIGWRLTRIRTF 226

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q74CP0 mscS-1 "Small-conductance mechanosensitive ion channel" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 132 (51.5 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 27/106 (25%), Positives = 57/106 (53%)

Query:   294 VILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVA 353
             V+ +  W +       +   +A +   G+DR+ +  L+++ ++ L  I LM +       
Sbjct:   113 VVTNIAWRITNELLGWYGSRLAERHGGGVDRQIIPPLEKLITIFLAGIALMVVLRHFNYD 172

Query:   354 VQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKV 399
             + S++T  GIG +A   A+++ L N++SG ++   +PF +GD I++
Sbjct:   173 ILSVVTALGIGSLAIGMAAKETLANMISGFTLMVDRPFRIGDRIQL 218

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_1633 GSU_1633 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 132 (51.5 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 27/106 (25%), Positives = 57/106 (53%)

Query:   294 VILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVA 353
             V+ +  W +       +   +A +   G+DR+ +  L+++ ++ L  I LM +       
Sbjct:   113 VVTNIAWRITNELLGWYGSRLAERHGGGVDRQIIPPLEKLITIFLAGIALMVVLRHFNYD 172

Query:   354 VQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKV 399
             + S++T  GIG +A   A+++ L N++SG ++   +PF +GD I++
Sbjct:   173 ILSVVTALGIGSLAIGMAAKETLANMISGFTLMVDRPFRIGDRIQL 218

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q74AJ7 GSU2357 "Mechanosensitive ion channel family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 129 (50.5 bits), Expect = 2.3e-05, P = 2.3e-05
 Identities = 38/146 (26%), Positives = 71/146 (48%)

Query:   258 DPVRYLITFMAFVQ--IGMMV-APTTIASQYLA-QAWRGAVILSFVWFLHRWKTNVFTRA 313
             D +R L+ + A +    G+    P T+  Q LA   +   +IL    F  R      T  
Sbjct:    52 DSLRGLLLYSALLTGLYGVATQVPMTVGLQRLAGNIFLVTIILVATLFFMRLAAGFVTH- 110

Query:   314 MASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASR 373
              A +++       +     ++ V +F IG++ + ++ G+++  ILT  G+GG+A A A +
Sbjct:   111 YAKKAVL----PSISIFSNLAKVSVFSIGILIILQSLGISIAPILTALGVGGLAVALALQ 166

Query:   374 DVLGNVLSGLSMQFSKPFSLGDTIKV 399
             D L N+ +GL +  ++    GD I++
Sbjct:   167 DTLSNIFAGLHIIATRQIRQGDYIRL 192

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_2357 GSU_2357 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 129 (50.5 bits), Expect = 2.3e-05, P = 2.3e-05
 Identities = 38/146 (26%), Positives = 71/146 (48%)

Query:   258 DPVRYLITFMAFVQ--IGMMV-APTTIASQYLA-QAWRGAVILSFVWFLHRWKTNVFTRA 313
             D +R L+ + A +    G+    P T+  Q LA   +   +IL    F  R      T  
Sbjct:    52 DSLRGLLLYSALLTGLYGVATQVPMTVGLQRLAGNIFLVTIILVATLFFMRLAAGFVTH- 110

Query:   314 MASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASR 373
              A +++       +     ++ V +F IG++ + ++ G+++  ILT  G+GG+A A A +
Sbjct:   111 YAKKAVL----PSISIFSNLAKVSVFSIGILIILQSLGISIAPILTALGVGGLAVALALQ 166

Query:   374 DVLGNVLSGLSMQFSKPFSLGDTIKV 399
             D L N+ +GL +  ++    GD I++
Sbjct:   167 DTLSNIFAGLHIIATRQIRQGDYIRL 192

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|NSE_0847 NSE_0847 "mechanosensitive ion channel family protein" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 115 (45.5 bits), Expect = 0.00078, P = 0.00078
 Identities = 24/60 (40%), Positives = 35/60 (58%)

Query:   338 LFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTI 397
             L V+GLM L +   V +  IL VGGIGGV    AS+D+  +    +++   +PF +GD I
Sbjct:   127 LLVVGLMIL-DKLNVNISGILAVGGIGGVVIGLASKDLFSSFFGFITILLDRPFKVGDLI 185


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.135   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      456       456   0.00094  118 3  11 22  0.47    33
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  264 KB (2140 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  41.94u 0.17s 42.11t   Elapsed:  00:00:02
  Total cpu time:  41.94u 0.17s 42.11t   Elapsed:  00:00:02
  Start:  Sat May 11 12:46:15 2013   End:  Sat May 11 12:46:17 2013

GO:0005216 "ion channel activity" evidence=ISS

GO:0006811 "ion transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VZL4	MSL1_ARATH	No assigned EC number	0.6038	0.6557	0.6016	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	456
pfam00924	202	pfam00924, MS_channel, Mechanosensitive ion channe	3e-13
COG0668	316	COG0668, MscS, Small-conductance mechanosensitive	3e-08
COG3264	835	COG3264, COG3264, Small-conductance mechanosensiti	0.003

>gnl|CDD|201506 pfam00924, MS_channel, Mechanosensitive ion channel

 Score = 68.0 bits (167), Expect = 3e-13
 Identities = 23/68 (33%), Positives = 41/68 (60%)

Query: 333 ISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFS 392
           I    + V+G++ +    GV V ++L   G  G+A  FA +D++ N++SG+ + F KPF 
Sbjct: 1   ILKYLIIVVGILIVLSYLGVNVSALLAGLGALGLALGFALQDLVSNLVSGIIILFEKPFK 60

Query: 393 LGDTIKVK 400
           +GD I++ 
Sbjct: 61  IGDWIEIG 68

Two members of this protein family from M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins. Length = 202

>gnl|CDD|223740 COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 30/148 (20%), Positives = 59/148 (39%), Gaps = 22/148 (14%)

Query: 252 FWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFT 311
             G L   +R L+  +  + I  ++                 V L     L      +  
Sbjct: 31  LNGLLLILLRKLLLLLLILLIAFLLI-------------AYLVKLLLRSLL--LLKALIR 75

Query: 312 RAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFA 371
           R     +++         L  +  + + V+ L+ +    GV V S+L   G  G+A   A
Sbjct: 76  RLARETTLSVF-------LSNLLRILILVVALLIVLSVLGVQVTSLLAGLGALGLAIGLA 128

Query: 372 SRDVLGNVLSGLSMQFSKPFSLGDTIKV 399
            +D+L N+++G+ +   +PF +GD I++
Sbjct: 129 LQDLLSNLIAGIFLLLERPFKVGDWIEI 156

Length = 316

>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 12/111 (10%)

Query: 292 GAVILSFVWFLHRW-----KTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMAL 346
             ++    + L R      +  V  R                ++  +    L  IG +  
Sbjct: 564 AVLLFLITYVLTRNLPGWLEVRVLQRLDLDAGTR-------YSITTLLGYLLIAIGGLVG 616

Query: 347 AEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTI 397
               G+ + S+  + G   V   F  ++++ N +SGL + F +P  +GDT+
Sbjct: 617 LSTLGIDLSSLQWLAGALSVGLGFGLQEIVSNFVSGLIILFERPVKVGDTV 667

Length = 835

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	456
PRK10334	286	mechanosensitive channel MscS; Provisional	99.96
PRK11465	741	putative mechanosensitive channel protein; Provisi	99.95
PRK10929	1109	putative mechanosensitive channel protein; Provisi	99.93
PRK11281	1113	hypothetical protein; Provisional	99.92
COG0668	316	MscS Small-conductance mechanosensitive channel [C	99.88
COG3264	835	Small-conductance mechanosensitive channel [Cell e	99.87
PF00924	206	MS_channel: Mechanosensitive ion channel; InterPro	99.85
KOG4629	714	consensus Predicted mechanosensitive ion channel [	97.95
PF05552	53	TM_helix: Conserved TM helix; InterPro: IPR008910	88.03
PRK10334	286	mechanosensitive channel MscS; Provisional	85.1

>PRK10334 mechanosensitive channel MscS; Provisional

Probab=99.96  E-value=3.5e-28  Score=243.12  Aligned_cols=159  Identities=20%  Similarity=0.227  Sum_probs=147.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Q 012779          283 SQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGG  362 (456)
Q Consensus       283 ~~~l~~il~~~iIl~i~~~l~r~l~~~i~~~l~~~~~~~~~~~~i~~i~~i~kili~ii~iiiiL~~lGi~~~sLLa~lG  362 (456)
                      ..+.++++.++++++++|++.|++..++.+.+.++..   +++....+.++++++++++++++++..+|++.+++++++|
T Consensus        25 ~~~~~~i~~al~il~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~l~~lGi~~~~l~a~~G  101 (286)
T PRK10334         25 LSYAVNIVAALAIIIVGLIIARMISNAVNRLMISRKI---DATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLG  101 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            4577889999999999999999999999888755433   6677888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcEEEECCceeeEE---------------EEEEeceeeeeeEEEEccCC
Q 012779          363 IGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKVKRAYTPLK---------------MIFISFFQIGNKVCRSRDFM  427 (456)
Q Consensus       363 v~GlalgLAaqD~L~Nl~AGI~I~~~rPFrVGD~I~I~g~~G~Ve---------------~I~IPNs~I~~~~I~N~t~~  427 (456)
                      ++|+++|||+||+++|++||++|+++|||++||||+++|.+|+|+               .+.+||+++.++.++|+|.+
T Consensus       102 ~~glaiG~a~q~~l~N~~sGi~i~~~rpf~vGD~I~i~~~~G~V~~I~~r~T~i~t~d~~~v~IPNs~~~~~~i~N~s~~  181 (286)
T PRK10334        102 AAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSRE  181 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEECCEEEEEEEEEeEEEEEEcCCCCEEEEcchHhcCCeeEEcCCC
Confidence            999999999999999999999999999999999999999999998               56899999999999999999


Q ss_pred             CceEEEEEeeeEEeeCCCCh
Q 012779          428 LKQRLSVFLTTIHRSCHTCP  447 (456)
Q Consensus       428 ~~rRi~~~~t~igv~Ydt~p  447 (456)
                      +.||+.+.   ++++||+|+
T Consensus       182 ~~rr~~~~---v~V~y~~d~  198 (286)
T PRK10334        182 PVRRNEFI---IGVAYDSDI  198 (286)
T ss_pred             CeEEEEEE---EEecCCCCH
Confidence            88999999   999999986

>PRK11465 putative mechanosensitive channel protein; Provisional

Probab=99.95  E-value=3.7e-25  Score=242.99  Aligned_cols=196  Identities=14%  Similarity=0.152  Sum_probs=150.1

Q ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHHHHhh-cch----hhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 012779          243 IEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMV-APT----TIASQYLAQAWRGAVIL---SFVWFLHRWKTNVFTRAM  314 (456)
Q Consensus       243 kt~~~~d~~l~~~L~~Pl~l~i~li~~~~l~~~~-~p~----~~~~~~l~~il~~~iIl---~i~~~l~r~l~~~i~~~l  314 (456)
                      ++.+.|++.+.+.++ |+.++++++++......+ ...    ......+..+..+++++   .++|.+.+   ..+++.+
T Consensus       417 ~r~~~~~~~~l~~lr-~l~~~~~vl~ll~a~~~l~l~~~~~~~~g~~~i~~l~~i~iil~i~~v~w~l~~---~~ie~~l  492 (741)
T PRK11465        417 KRLNGWLSAALKTAR-ILTVCVAVMLLLNAWGLFDFWNWLQNGAGEKTVDILIRIALILFFSAVGWTVLA---SLIENRL  492 (741)
T ss_pred             HHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhcchHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence            467889999999888 888877777664322211 111    11223344444444444   55555544   3333333


Q ss_pred             hhc-----cccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 012779          315 ASQ-----SIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSK  389 (456)
Q Consensus       315 ~~~-----~~~~~~~~~i~~i~~i~kili~ii~iiiiL~~lGi~~~sLLa~lGv~GlalgLAaqD~L~Nl~AGI~I~~~r  389 (456)
                      .++     .....+++..+.+++++++++++++++++++.+|++++++++++|++|+++|||+|++++|+++|++|+++|
T Consensus       493 ~~~~~~~~~~~~r~~Tl~~ll~~~~~~~i~~i~~l~vL~~lGi~it~LlA~aGi~GlaiGfaaQ~~l~N~isGi~Il~e~  572 (741)
T PRK11465        493 ASDIHGRPLPSARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDIITGVFIQFEN  572 (741)
T ss_pred             hhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            211     111235677889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcEEEECCceeeEEE---------------EEEeceeeeeeEEEEccCCCceEEEEEeeeEEeeCCCChH
Q 012779          390 PFSLGDTIKVKRAYTPLKM---------------IFISFFQIGNKVCRSRDFMLKQRLSVFLTTIHRSCHTCPI  448 (456)
Q Consensus       390 PFrVGD~I~I~g~~G~Ve~---------------I~IPNs~I~~~~I~N~t~~~~rRi~~~~t~igv~Ydt~p~  448 (456)
                      ||++||||+++|.+|+||+               +.+||+++.+  ++|++++ .+|+.++   ++|+|++|.+
T Consensus       573 pf~vGD~I~v~g~~GtVe~I~lRsT~iRt~dg~~i~IPNs~i~~--v~N~Sr~-~~~~~v~---v~V~Y~~Did  640 (741)
T PRK11465        573 GMNTGDLVTIGPLTGTVERMSIRSVGVRQDTGAYHIIPWSSITT--FANFVRG-IGSVVAN---YDVDRHEDAD  640 (741)
T ss_pred             CcCCCCEEEECCeEEEEEEEeeeEEEEEcCCCCEEEEECCccee--eEEeccC-ceEEEEE---EEeCCCCCHH
Confidence            9999999999999999984               5899999974  9999976 5578888   9999999864

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=99.93  E-value=9.2e-24  Score=240.63  Aligned_cols=163  Identities=18%  Similarity=0.231  Sum_probs=146.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Q 012779          286 LAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGG  365 (456)
Q Consensus       286 l~~il~~~iIl~i~~~l~r~l~~~i~~~l~~~~~~~~~~~~i~~i~~i~kili~ii~iiiiL~~lGi~~~sLLa~lGv~G  365 (456)
                      +.+++.+++++++++++.|.+..++++.+.++.  +.++....++.++++++++++++++++..+|++.+++.+.+|++|
T Consensus       833 l~~ll~AllIliv~~~l~r~l~~lle~~l~~~~--~l~~~~~~~i~~l~~y~I~~ig~l~~L~~lGI~~t~l~al~galG  910 (1109)
T PRK10929        833 LGSVLIAILVFIITTQLVRNLPALLELALLQHL--DLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALG  910 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            567888999999999999999999988764332  236677888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCcEEEECCceeeEE---------------EEEEeceeeeeeEEEEccCCCc-
Q 012779          366 VATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKVKRAYTPLK---------------MIFISFFQIGNKVCRSRDFMLK-  429 (456)
Q Consensus       366 lalgLAaqD~L~Nl~AGI~I~~~rPFrVGD~I~I~g~~G~Ve---------------~I~IPNs~I~~~~I~N~t~~~~-  429 (456)
                      +++|||+||+++|++||++|+++|||++||||+++|.+|+|+               +|.|||+++.+..++|||..+. 
T Consensus       911 VgIGfAlQ~ilsNfiSGIiIL~erPfrVGD~I~I~~~~GtV~~I~lRsT~Irt~Dg~~IiIPNs~~it~~IiN~S~~d~~  990 (1109)
T PRK10929        911 VGLGFGLQEIFANFISGLIILFEKPIRIGDTVTIRDLTGSVTKINTRATTISDWDRKEIIVPNKAFITEQFINWSLSDSV  990 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEECCEEEEEEEEeeeEEEEEeCCCCEEEEEChhhhcCceEecCCCCcc
Confidence            999999999999999999999999999999999999999997               6799999999999999998875 


Q ss_pred             eEEEEEeeeEEeeCCCCh--HHHHHh
Q 012779          430 QRLSVFLTTIHRSCHTCP--IREVLN  453 (456)
Q Consensus       430 rRi~~~~t~igv~Ydt~p--~rev~~  453 (456)
                      +|+.+.   |||+|++|+  .+++++
T Consensus       991 ~Rv~i~---VgV~Y~sDie~v~~iL~ 1013 (1109)
T PRK10929        991 TRVVLT---IPAPADANSEEVTEILL 1013 (1109)
T ss_pred             eEEEEE---EEeCCCCCHHHHHHHHH
Confidence            699999   999999986  444443

>PRK11281 hypothetical protein; Provisional

Probab=99.92  E-value=1.2e-22  Score=232.10  Aligned_cols=158  Identities=15%  Similarity=0.199  Sum_probs=143.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Q 012779          285 YLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIG  364 (456)
Q Consensus       285 ~l~~il~~~iIl~i~~~l~r~l~~~i~~~l~~~~~~~~~~~~i~~i~~i~kili~ii~iiiiL~~lGi~~~sLLa~lGv~  364 (456)
                      .+++++.++++++++|++.|++..+++.+..++.  ..++.....+.++++++++++++++++..+|++.+++.+.+|++
T Consensus       835 tl~~Ll~allIl~i~~~l~r~l~~ll~~~~~~rl--~l~~~~~~~i~~li~y~I~~i~iliaL~~lGi~~t~L~~l~gaL  912 (1113)
T PRK11281        835 TLGNLLFALIILVVTYVLVRNLPGLLEVLVLSRL--NLRQGTSYAITTLLTYIIIAVGAVTAFSTLGVSWDKLQWLVAAL  912 (1113)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            5788999999999999999999998877653322  12445667789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcEEEECCceeeEE---------------EEEEeceeeeeeEEEEccCCCc
Q 012779          365 GVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKVKRAYTPLK---------------MIFISFFQIGNKVCRSRDFMLK  429 (456)
Q Consensus       365 GlalgLAaqD~L~Nl~AGI~I~~~rPFrVGD~I~I~g~~G~Ve---------------~I~IPNs~I~~~~I~N~t~~~~  429 (456)
                      |+++|||+||+++|++||++|+++|||++||+|+++|.+|+|+               +|.|||+.+.+..++|||..+.
T Consensus       913 gVgIGfglQ~ilsNfISGiiIl~eRPfrIGD~I~I~~~~G~V~~I~lRsT~Irt~D~~~ViIPNs~~~t~~IiN~S~~~~  992 (1113)
T PRK11281        913 SVGLGFGLQEIFANFVSGLIILFERPVRIGDTVTIGTFSGTVSKIRIRATTITDFDRKEVIVPNKAFVTERLINWSLSDT  992 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCEEEECCEEEEEEEEEeEEEEEEcCCCCEEEEechhhhcCceEeCCCCCc
Confidence            9999999999999999999999999999999999999999997               6799999999999999998764


Q ss_pred             -eEEEEEeeeEEeeCCCCh
Q 012779          430 -QRLSVFLTTIHRSCHTCP  447 (456)
Q Consensus       430 -rRi~~~~t~igv~Ydt~p  447 (456)
                       +|+.+.   |+|+||+|+
T Consensus       993 ~~Rv~i~---vgV~Y~sDi 1008 (1113)
T PRK11281        993 VTRVVIK---VGVAYGSDL 1008 (1113)
T ss_pred             ceEEEEE---EEeCCCCCH
Confidence             789999   999999975

>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

Probab=99.88  E-value=2.1e-20  Score=185.86  Aligned_cols=122  Identities=20%  Similarity=0.293  Sum_probs=114.8

Q ss_pred             chHHHH-HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEC-
Q 012779          323 DREKML-ALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKVK-  400 (456)
Q Consensus       323 ~~~~i~-~i~~i~kili~ii~iiiiL~~lGi~~~sLLa~lGv~GlalgLAaqD~L~Nl~AGI~I~~~rPFrVGD~I~I~-  400 (456)
                      +..... .+.++.+++++++++++++..+|++++++++++|++|+++|||+|++++|+++|++++++|||++||||+++ 
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~lla~~G~~glaigla~q~~~~n~~~Gi~il~~~~f~vGD~I~i~~  158 (316)
T COG0668          79 RETTLSVFLSNLLRILILVVALLIVLSVLGVQVTSLLAGLGALGLAIGLALQDLLSNLIAGIFLLLERPFKVGDWIEIGS  158 (316)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHhheecCcCcCCEEEECC
Confidence            334445 789999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CceeeEE---------------EEEEeceeeeeeEEEEccCCCceEEEEEeeeEEeeCCCCh
Q 012779          401 RAYTPLK---------------MIFISFFQIGNKVCRSRDFMLKQRLSVFLTTIHRSCHTCP  447 (456)
Q Consensus       401 g~~G~Ve---------------~I~IPNs~I~~~~I~N~t~~~~rRi~~~~t~igv~Ydt~p  447 (456)
                      +.+|+|+               .+.+||+++.+..+.|++++..+|+.+.   ++++|++|+
T Consensus       159 ~~~G~V~~i~~~~T~ir~~dg~~v~iPNs~i~~~~i~N~s~~~~~~~~~~---v~v~~~~~~  217 (316)
T COG0668         159 GVEGTVEDIGLRSTTIRTLDGRIVTIPNSKLFTANVVNYSREPGRRVEVK---VGVAYDSDL  217 (316)
T ss_pred             CceEEEEEEEEEEEEEEcCCCCEEEccchhhccCceEeCCCCCcEEEEEE---EeeccCCCH
Confidence            7999997               5699999999999999999999899999   999999985

>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

Probab=99.87  E-value=2.3e-20  Score=204.60  Aligned_cols=162  Identities=17%  Similarity=0.264  Sum_probs=145.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Q 012779          286 LAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGG  365 (456)
Q Consensus       286 l~~il~~~iIl~i~~~l~r~l~~~i~~~l~~~~~~~~~~~~i~~i~~i~kili~ii~iiiiL~~lGi~~~sLLa~lGv~G  365 (456)
                      +..++.+++++++++++.|++..+.+...-++..  .+......+.+++++++..+++++.++.+|+|.+++--..|++|
T Consensus       558 l~~ll~avl~~~~~~~l~r~~~~~L~~~vl~r~~--~~~G~r~~I~t~~~Y~~~~i~~l~~lS~~Gi~lssL~~~~gALs  635 (835)
T COG3264         558 LGALLQAVLLFLITYVLTRNLPGWLEVRVLQRLD--LDAGTRYSITTLLGYLLIAIGGLVGLSTLGIDLSSLQWLAGALS  635 (835)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCcchHHHHHHHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHhh
Confidence            5678889999999999999999988855544322  36667778999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCcEEEECCceeeEE---------------EEEEeceeeeeeEEEEccCCC-c
Q 012779          366 VATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKVKRAYTPLK---------------MIFISFFQIGNKVCRSRDFML-K  429 (456)
Q Consensus       366 lalgLAaqD~L~Nl~AGI~I~~~rPFrVGD~I~I~g~~G~Ve---------------~I~IPNs~I~~~~I~N~t~~~-~  429 (456)
                      +++||+.|++.+||+||++|+++|||||||||++++.+|+|.               +|.+||+.+.+..+.||+..+ .
T Consensus       636 vGiGFGLQ~I~~NFVSGlIiL~ErpvkvGD~It~g~~~G~V~~I~vRAT~I~~fd~~~vIVPNs~fI~~qV~NWs~~~~~  715 (835)
T COG3264         636 VGLGFGLQEIVSNFVSGLIILFERPVKVGDTVTIGTVSGTVRKISVRATTIRTFDRKEVIVPNSAFITEQVINWSLRDTT  715 (835)
T ss_pred             hhhchhHHHHHHHhhhhhhhheecCcccCCEEEECCceEEEEEEEeeEEEEEeCCCCeEEeccHHHHhhheeeeeccCce
Confidence            999999999999999999999999999999999999999996               779999999999999999887 5


Q ss_pred             eEEEEEeeeEEeeCCCChH--HHHH
Q 012779          430 QRLSVFLTTIHRSCHTCPI--REVL  452 (456)
Q Consensus       430 rRi~~~~t~igv~Ydt~p~--rev~  452 (456)
                      .|+.++   ||++|+|||+  +|++
T Consensus       716 ~R~~i~---v~vay~sD~~~V~~~L  737 (835)
T COG3264         716 TRLVIP---VGVAYGSDPELVRELL  737 (835)
T ss_pred             EEEEEE---ecccCCCCHHHHHHHH
Confidence            799999   9999999984  4444

>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation

Probab=99.85  E-value=3.3e-21  Score=181.77  Aligned_cols=121  Identities=25%  Similarity=0.438  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcEEEECCceeeEE----
Q 012779          332 RISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKVKRAYTPLK----  407 (456)
Q Consensus       332 ~i~kili~ii~iiiiL~~lGi~~~sLLa~lGv~GlalgLAaqD~L~Nl~AGI~I~~~rPFrVGD~I~I~g~~G~Ve----  407 (456)
                      ++++++++++++++++..+|.+..++++++|++|+++|||+||+++|++||++|.++|||++||||+++|..|.|+    
T Consensus         2 ~i~~~~~~~~~~~~~l~~~g~~~~~l~~~~g~~~~~i~f~~~~~~~n~~~gi~i~~~~pf~vGD~I~i~~~~G~V~~I~l   81 (206)
T PF00924_consen    2 KIIRIVIIIVGILIILSILGIDVSSLLASLGVLGLAIGFAFQDIISNFISGIIILFERPFKVGDRIEIGGVEGRVEEIGL   81 (206)
T ss_dssp             -HHHHHHHHHHHHHHHHCCT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC-SS-TT-EEESSS-EEEEEEE-S
T ss_pred             hHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCEEEEEEeehHHHhcCc
Confidence            6789999999999999999999999999999999999999999999999999999999999999999999999997    


Q ss_pred             -----------EEEEeceeeeeeEEEEccC-CCceEEEEEeeeEEeeCCCCh--HHHHHhhc
Q 012779          408 -----------MIFISFFQIGNKVCRSRDF-MLKQRLSVFLTTIHRSCHTCP--IREVLNRI  455 (456)
Q Consensus       408 -----------~I~IPNs~I~~~~I~N~t~-~~~rRi~~~~t~igv~Ydt~p--~rev~~~~  455 (456)
                                 .+.+||+++.+..+.|+++ ++.+|..+.   +.++|++++  .+++.+.+
T Consensus        82 ~~t~l~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~v~---~~v~~~~~~~~~~~~~~~i  140 (206)
T PF00924_consen   82 RSTRLRTWDGEIVIIPNSKLISSPIVNYSRSSPYRRVVVE---IPVDYDTDPEKIEELREKI  140 (206)
T ss_dssp             SEEEEEETTS-EEEEEHHHHHCS-EEETTT-SSEEEEEEE---EEE-TTS----HHHHHHHH
T ss_pred             ceeeeecCCCCEEEEEchheeeEEEEEeeccCCceeeeee---eeEecCCCchHHHHHHHHH
Confidence                       5699999999999999999 777889999   999999983  66776654

They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.

>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]

Probab=97.95  E-value=8.5e-06  Score=90.60  Aligned_cols=120  Identities=20%  Similarity=0.151  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCCCCcEEEECCce
Q 012779          325 EKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSG-LSMQFSKPFSLGDTIKVKRAY  403 (456)
Q Consensus       325 ~~i~~i~~i~kili~ii~iiiiL~~lGi~~~sLLa~lGv~GlalgLAaqD~L~Nl~AG-I~I~~~rPFrVGD~I~I~g~~  403 (456)
                      +.+.-+.+++.+++.++++++.+..+|++.+.+++..+-.-+++.+.+.+++.+++.+ ++++...||-+||+|.++|+.
T Consensus       478 taV~kL~~il~~Iv~vv~~~i~lil~~i~~~~~l~~~~sq~v~l~fif~~~~k~~~esiIFlfv~HPyDvGDRv~VDg~~  557 (714)
T KOG4629|consen  478 TAVNKLDRILNFIVAVVLLVIWLILLGINTSKLLLVISSQLVGLAFIFGNIVKELLESIIFLFVMHPYDVGDRVVVDGVN  557 (714)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeeeeecccceeeeeehhhHHHHHHHHHhheeecCCCCCCCeEEEeceE
Confidence            4456677778888887888888888899998888887766678889999999999984 566778899999999999988


Q ss_pred             eeEE---------------EEEEeceeeeeeEEEEccCCCceEEEEEeeeEEeeCCCCh
Q 012779          404 TPLK---------------MIFISFFQIGNKVCRSRDFMLKQRLSVFLTTIHRSCHTCP  447 (456)
Q Consensus       404 G~Ve---------------~I~IPNs~I~~~~I~N~t~~~~rRi~~~~t~igv~Ydt~p  447 (456)
                      -.|+               .|.+||+.+....|.|+.+.+.+--.+.   +.+...|++
T Consensus       558 ~vVeemnLlsTvF~~~dg~kI~~PNS~L~~k~I~N~rRS~~~~~~v~---f~i~~~T~~  613 (714)
T KOG4629|consen  558 LVVEEMNLLSTVFLRVDGRKIFIPNSVLWTKAISNYRRSPDMGDEVE---FLISSSTPF  613 (714)
T ss_pred             EEEEEeccceEEEEEECCeEEEeecHHHHhhhhhhhhcCccccccEE---EEecCCCCH
Confidence            8886               5789999999999999998877655666   888888875

>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence

Probab=88.03  E-value=0.94  Score=34.22  Aligned_cols=38  Identities=16%  Similarity=0.415  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012779          282 ASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSI  319 (456)
Q Consensus       282 ~~~~l~~il~~~iIl~i~~~l~r~l~~~i~~~l~~~~~  319 (456)
                      +..|+|+++.+++++.++|++.+++.+++.+.+++...
T Consensus        11 ii~~lP~iv~AilIl~vG~~va~~v~~~~~~~l~~~~~   48 (53)
T PF05552_consen   11 IIAYLPNIVGAILILIVGWWVAKFVRKLVRRLLEKRGV   48 (53)
T ss_dssp             --GGHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            35789999999999999999999999999999987654

It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.

>PRK10334 mechanosensitive channel MscS; Provisional

Probab=85.10  E-value=46  Score=33.74  Aligned_cols=59  Identities=15%  Similarity=0.182  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccccccCCcccccccchHHHHHHHHHHHHHHHHHHHH
Q 012779          197 LRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAF  269 (456)
Q Consensus       197 L~~~i~~ll~~ll~~ll~wlv~~~Ilrrl~~~i~~~~~~~l~~~~~kt~~~~d~~l~~~L~~Pl~l~i~li~~  269 (456)
                      +..+...++.+++..+++|++.+++.+.+.+...+              ...+..+...+.+.++++++++++
T Consensus        24 ~~~~~~~i~~al~il~~~~~~~~~i~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~i~~~~~   82 (286)
T PRK10334         24 LLSYAVNIVAALAIIIVGLIIARMISNAVNRLMIS--------------RKIDATVADFLSALVRYGIIAFTL   82 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------cCCChHHHHHHHHHHHHHHHHHHH
Confidence            33455566666777777888886655545444432              234455555666677776665554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	456
2vv5_A	286	MSCS, small-conductance mechanosensitive channel;	2e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A Length = 286

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 3/125 (2%)

Query: 275 MVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRIS 334
           +VA   +   Y         I+     + R  +N   R M S+ I   D      L  + 
Sbjct: 17  LVANQALLLSYAVNIVAALAIIIVGLIIARMISNAVNRLMISRKI---DATVADFLSALV 73

Query: 335 SVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLG 394
             G+    L+A     GV   S++ V G  G+    A +  L N+ +G+ +   +PF  G
Sbjct: 74  RYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLALQGSLSNLAAGVLLVMFRPFRAG 133

Query: 395 DTIKV 399
           + + +
Sbjct: 134 EYVDL 138

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 78/539 (14%), Positives = 147/539 (27%), Gaps = 178/539 (33%)

Query: 17  IYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGF 76
           +Y   + RL + +  + K      Q ++KL  A+         L  A N     + + G 
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-------LELRPAKN-----VLIDGV 158

Query: 77  APIGKT--------------------------QCHKANAV-----SSYLPTSKNFCSRRL 105
              GKT                           C+    V             N+ SR  
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 106 ATFASISPFLGHRSY-SSFFGSKTDKSTEI--DVPAASSGSETDVSNHGIVGSDSFD--- 159
            +          ++       SK  ++  +             +V N      ++F+   
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL----------NVQNAKAW--NAFNLSC 266

Query: 160 KI----KDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLA- 214
           KI    +   K V D +S                    H  L    + ++     ++L  
Sbjct: 267 KILLTTRF--KQVTDFLSAATTT---------------HISLDHHSMTLTPDEVKSLLLK 309

Query: 215 WVVM-----PRVLRRFHKYAIQGPVSLLSGGLSI----EQVPYEK------SFWGALEDP 259
           ++       PR +   +   +      +  GL+     + V  +K      S    LE  
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 260 V---RY--LITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWF-LHRWKTNVFTRA 313
                +  L  F     I     PT               +LS +WF + +    V    
Sbjct: 370 EYRKMFDRLSVFPPSAHI-----PTI--------------LLSLIWFDVIKSDVMVVVNK 410

Query: 314 MASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAV--QSILTVGGIGGVATAFA 371
           +   S+     ++       S++ +  I L    +        +SI+    I      F 
Sbjct: 411 LHKYSLVEKQPKE-------STISIPSIYLELKVKLENEYALHRSIVDHYNI---PKTFD 460

Query: 372 SRDVLGNVLSGLSMQFSKPFSLG---DTIKVKRAYTPLKMIFISF-FQIGNKVCRS---- 423
           S D++   L            +G     I+     T  +M+F+ F F +  K+       
Sbjct: 461 SDDLIPPYLDQYFYSH-----IGHHLKNIEHPERMTLFRMVFLDFRF-LEQKIRHDSTAW 514

Query: 424 ----------------RDFMLKQR---------LSVFL----TTIHRSCHTCPIREVLN 453
                           + ++             +  FL      +  S +T  +R  L 
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM 573

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	456
2vv5_A	286	MSCS, small-conductance mechanosensitive channel;	99.95
3udc_A	285	Small-conductance mechanosensitive channel, C-TER	99.93

>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A

Probab=99.95  E-value=1.4e-27  Score=237.05  Aligned_cols=158  Identities=19%  Similarity=0.225  Sum_probs=146.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q 012779          284 QYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGI  363 (456)
Q Consensus       284 ~~l~~il~~~iIl~i~~~l~r~l~~~i~~~l~~~~~~~~~~~~i~~i~~i~kili~ii~iiiiL~~lGi~~~sLLa~lGv  363 (456)
                      .++++++.++++++++|++.+++..++.+++.+..   .+++....+.++++++++++++++++..+|++++++++++|+
T Consensus        26 ~~~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~  102 (286)
T 2vv5_A           26 SYAVNIVAALAIIIVGLIIARMISNAVNRLMISRK---IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGA  102 (286)
T ss_dssp             GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            45678889999999999999999999888876543   367788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcEEEECCceeeEE---------------EEEEeceeeeeeEEEEccCCC
Q 012779          364 GGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKVKRAYTPLK---------------MIFISFFQIGNKVCRSRDFML  428 (456)
Q Consensus       364 ~GlalgLAaqD~L~Nl~AGI~I~~~rPFrVGD~I~I~g~~G~Ve---------------~I~IPNs~I~~~~I~N~t~~~  428 (456)
                      +|+++|||+||+++|++||++|+++|||++||||+++|.+|+|+               .+.+||+++.+..++|+|+.+
T Consensus       103 ~g~aig~a~q~~l~n~~sGi~i~~~~pf~vGD~I~i~g~~G~V~~I~l~~T~i~t~dg~~v~IPNs~l~~~~i~N~s~~~  182 (286)
T 2vv5_A          103 AGLVVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREP  182 (286)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHTTCSSCTTCEEESSSCEEEEEEECSSEEEEECTTSCEEEEEHHHHHTSCEEESSSSS
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHhcCCccCCCEEEECCEEEEEEEEEeEEEEEEeCCCCEEEechHHHhhCceEECCCCC
Confidence            99999999999999999999999999999999999999999998               469999999999999999998


Q ss_pred             ceEEEEEeeeEEeeCCCCh
Q 012779          429 KQRLSVFLTTIHRSCHTCP  447 (456)
Q Consensus       429 ~rRi~~~~t~igv~Ydt~p  447 (456)
                      .||+.+.   ++++|++|+
T Consensus       183 ~~r~~~~---v~v~y~~d~  198 (286)
T 2vv5_A          183 VRRNEFI---IGVAYDSDI  198 (286)
T ss_dssp             EEEEEEE---EEECTTSCH
T ss_pred             cEEEEEE---EEEcCCCCH
Confidence            8899888   999999986

>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*

Probab=99.93  E-value=3.2e-24  Score=212.67  Aligned_cols=119  Identities=17%  Similarity=0.230  Sum_probs=108.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcEEEECCce
Q 012779          324 REKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKVKRAY  403 (456)
Q Consensus       324 ~~~i~~i~~i~kili~ii~iiiiL~~lGi~~~sLLa~lGv~GlalgLAaqD~L~Nl~AGI~I~~~rPFrVGD~I~I~g~~  403 (456)
                      ++....+.++++++++++++++++..+|++.+++++++|++|+++|||+||+++|++||++|+++|||++||||+++|.+
T Consensus        62 ~tl~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~l~a~~g~~g~aig~a~q~~l~n~~~Gi~i~~~~pf~vGD~I~i~~~~  141 (285)
T 3udc_A           62 DTLTSLTKNAVRYIIYFLAGASILKLFNIDMTSLLAVAGIGSLAIGFGAQNLVKDMISGFFIIFEDQFSVGDYVTINGIS  141 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSCCTTCEEEETTEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCCEEEECCEE
Confidence            35567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEE---------------EEEEeceeeeeeEEEEccCCCceEEEEEeeeEEeeCCCChH
Q 012779          404 TPLK---------------MIFISFFQIGNKVCRSRDFMLKQRLSVFLTTIHRSCHTCPI  448 (456)
Q Consensus       404 G~Ve---------------~I~IPNs~I~~~~I~N~t~~~~rRi~~~~t~igv~Ydt~p~  448 (456)
                      |+|+               .+.+||+++  ..++|++++. +|..+.   ++++|++|++
T Consensus       142 G~V~~I~l~~T~i~t~d~~~v~iPN~~l--~~i~N~s~~~-~~~~~~---v~v~~~~d~~  195 (285)
T 3udc_A          142 GTVEEIGLRVTKIRGFSDGLHIIPNGEI--KMVTNLTKDS-MMAVVN---IAFPIDEDVD  195 (285)
T ss_dssp             EEEEEECSSEEEEEETTTEEEEEEGGGC--SCEEECSSSC-EEEEEE---EEEETTSCHH
T ss_pred             EEEEEeeeeEEEEecCCCCEEEeccccc--ccccccCCCC-ceEEEE---EeeecCCCHH
Confidence            9997               469999999  4599999765 455677   9999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	456
d2vv5a3	86	f.34.1.1 (A:27-112) Mechanosensitive channel prote	3e-08

>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]} Length = 86

class: Membrane and cell surface proteins and peptides
fold: Mechanosensitive channel protein MscS (YggB), transmembrane region
superfamily: Mechanosensitive channel protein MscS (YggB), transmembrane region
family: Mechanosensitive channel protein MscS (YggB), transmembrane region
domain: Mechanosensitive channel protein MscS (YggB), transmembrane region
species: Escherichia coli [TaxId: 562]

 Score = 48.5 bits (116), Expect = 3e-08
 Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 3/87 (3%)

Query: 285 YLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLM 344
           Y         I+     + R  +N   R M S+    +D      L  +   G+    L+
Sbjct: 1   YAVNIVAALAIIIVGLIIARMISNAVNRLMISR---KIDATVADFLSALVRYGIIAFTLI 57

Query: 345 ALAEACGVAVQSILTVGGIGGVATAFA 371
           A     GV   S++ V G  G+    A
Sbjct: 58  AALGRVGVQTASVIAVLGAAGLVVGLA 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	456
d2vv5a1	67	Mechanosensitive channel protein MscS (YggB), midd	99.31
d2vv5a3	86	Mechanosensitive channel protein MscS (YggB), tran	99.18

>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Mechanosensitive channel protein MscS (YggB), middle domain
domain: Mechanosensitive channel protein MscS (YggB), middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=5.7e-13  Score=103.04  Aligned_cols=51  Identities=18%  Similarity=0.219  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHhhcCCCCCCcEEEECCceeeEE---------------EEEEeceeeeeeEEEEcc
Q 012779          375 VLGNVLSGLSMQFSKPFSLGDTIKVKRAYTPLK---------------MIFISFFQIGNKVCRSRD  425 (456)
Q Consensus       375 ~L~Nl~AGI~I~~~rPFrVGD~I~I~g~~G~Ve---------------~I~IPNs~I~~~~I~N~t  425 (456)
                      +|+|++||++|+++|||++||||++++.+|+|+               .+.+||+++.+..++|||
T Consensus         2 tlsN~~sGi~i~~~~pf~vGD~I~i~~~~G~V~~I~l~~T~l~~~dg~~i~iPN~~~~~~~i~N~S   67 (67)
T d2vv5a1           2 SLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFS   67 (67)
T ss_dssp             HHHHHHHHHHHHTTCSSCTTCEEESSSCEEEEEEECSSEEEEECTTSCEEEEEHHHHHTSCEEESS
T ss_pred             cHHHHHHHhhheeeCCccCCCEEEECCEEEEEEEEeceEEEEEccCCCEEEEECHHHcCCccEECc
Confidence            789999999999999999999999999999997               458888888888888875

>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Mechanosensitive channel protein MscS (YggB), transmembrane region
superfamily: Mechanosensitive channel protein MscS (YggB), transmembrane region
family: Mechanosensitive channel protein MscS (YggB), transmembrane region
domain: Mechanosensitive channel protein MscS (YggB), transmembrane region
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=4.2e-11  Score=96.14  Aligned_cols=85  Identities=22%  Similarity=0.288  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Q 012779          286 LAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGG  365 (456)
Q Consensus       286 l~~il~~~iIl~i~~~l~r~l~~~i~~~l~~~~~~~~~~~~i~~i~~i~kili~ii~iiiiL~~lGi~~~sLLa~lGv~G  365 (456)
                      .++++.+++++.++|++.|++.+.+++.++++..   |++..+.+.++.++++++++++++++.+|+|++++++++|++|
T Consensus         2 ~~~il~~l~il~i~~~i~~~i~~~~~~~~~~~~~---~~~~~~~i~~~~~~~i~~i~~~~~L~~~Gi~~t~l~a~~G~~g   78 (86)
T d2vv5a3           2 AVNIVAALAIIIVGLIIARMISNAVNRLMISRKI---DATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAG   78 (86)
T ss_dssp             GSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            3577888999999999999999999888876543   7788899999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 012779          366 VATAFASR  373 (456)
Q Consensus       366 lalgLAaq  373 (456)
                      +++|||+|
T Consensus        79 vaiGfa~Q   86 (86)
T d2vv5a3          79 LVVGLALQ   86 (86)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHhcC
Confidence            99999998