Citrus Sinensis ID: 012788
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 456 | 2.2.26 [Sep-21-2011] | |||||||
| A7PZL3 | 491 | Probable polygalacturonas | no | no | 0.892 | 0.828 | 0.487 | 1e-116 | |
| Q9LW07 | 456 | Probable polygalacturonas | no | no | 0.807 | 0.807 | 0.276 | 1e-27 | |
| Q7M1E7 | 514 | Polygalacturonase OS=Cham | N/A | no | 0.800 | 0.710 | 0.252 | 4e-21 | |
| P43212 | 514 | Polygalacturonase OS=Cryp | N/A | no | 0.793 | 0.704 | 0.253 | 4e-20 | |
| Q8RY29 | 433 | Polygalacturonase ADPG2 O | no | no | 0.589 | 0.621 | 0.296 | 5e-19 | |
| Q9FY19 | 507 | Polygalacturonase OS=Juni | N/A | no | 0.752 | 0.676 | 0.262 | 2e-18 | |
| O23147 | 431 | Polygalacturonase ADPG1 O | no | no | 0.833 | 0.881 | 0.232 | 7e-18 | |
| P35336 | 467 | Polygalacturonase OS=Acti | N/A | no | 0.763 | 0.745 | 0.246 | 1e-17 | |
| Q949Z1 | 475 | Polygalacturonase At1g481 | no | no | 0.578 | 0.555 | 0.266 | 3e-17 | |
| P49062 | 422 | Exopolygalacturonase clon | no | no | 0.721 | 0.779 | 0.277 | 2e-15 |
| >sp|A7PZL3|PGLR_VITVI Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 417 bits (1073), Expect = e-116, Method: Compositional matrix adjust.
Identities = 199/408 (48%), Positives = 267/408 (65%), Gaps = 1/408 (0%)
Query: 37 RPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHL 96
R HS S+ +FG VGDG+TLNT AFQ+A+ L + +GGAQLYVP+GKWLTGSF+LTSH
Sbjct: 59 RAHSASLVDFGGVGDGQTLNTKAFQDAVSELSKYGSEGGAQLYVPAGKWLTGSFSLTSHF 118
Query: 97 TLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTI 156
TLFL + AV+L SQ+ S W V+ PLPSYGRG + RY SLI G L DV++TGDNGTI
Sbjct: 119 TLFLHRDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITGDNGTI 178
Query: 157 DGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNI 216
DGQG +WW F L Y+RP+L+E + S ++ +SNLT LN+P++N+HPVY N+ IQ I
Sbjct: 179 DGQGGLWWQRFHGGKLKYTRPYLIELMYSADIQISNLTLLNSPSWNVHPVYSRNILIQGI 238
Query: 217 SVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRR 276
++ AP SP T GI PDS N IEDC I G D +++KSGWDEYGIAYG PT + IRR
Sbjct: 239 TILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRR 298
Query: 277 VLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAEL 336
+ S + +A GSEMSGGI +V+ E I +S +GI +T GRGGY++ I + +
Sbjct: 299 LTCISPYSAVIALGSEMSGGIQDVRAEDIVAINSESGIRIKTGIGRGGYVKDIYVRGMTM 358
Query: 337 YNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQEAPFANIC 396
+ AF GN GSH D+ +DP A P I I ++D++ N+++A GI PF IC
Sbjct: 359 KTMKWAFWMTGNYGSHADNHYDPKAFPVIQGINYRDMVAENVSMAARLEGIPSDPFTGIC 418
Query: 397 LSNISLSINPGSYN-SWECSNIHGSSESVFPEPCPELENSSSNSSSTC 443
+SN+++ + + W C+++ G S V P PC L + +S C
Sbjct: 419 ISNVTIHLAAKAKKVPWTCTDVEGISSGVTPTPCSTLPDQGPEKTSLC 466
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Vitis vinifera (taxid: 29760) EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5 |
| >sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 118/426 (27%), Positives = 193/426 (45%), Gaps = 58/426 (13%)
Query: 39 HSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTL 98
+++ +T+FGAVGDG T ++ AF A + + G Q VP+G +T L
Sbjct: 22 NALDVTQFGAVGDGVTDDSQAFLKA--WEAVCSGTGDGQFVVPAG--------MTFMLQP 71
Query: 99 FLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYML----RDVVVTGDNG 154
+G+ P ++ L + +G +K + ++L +V+ GD G
Sbjct: 72 LKFQGSC---KSTPVFVQMLGKLVAPSKG------NWKGDKDQWILFTDIEGLVIEGD-G 121
Query: 155 TIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQ 214
I+GQGS WW+ SRP ++F S N+ +S LT L++P +IH C+ V I
Sbjct: 122 EINGQGSSWWE------HKGSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTIS 175
Query: 215 NISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHI 274
++ ++AP SP T GI +S NV I+DCIIA G D I++ SG T+++HI
Sbjct: 176 SLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG-----------TSNIHI 224
Query: 275 RRVLLQSSSGSSVAFGSEMSGG----ISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIV 330
+ G ++ GS G + NV V+ + ++NG +T +G GY R I
Sbjct: 225 SGI--DCGPGHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMIT 282
Query: 331 ISDAELYNIN--VAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAG-NFTGI 387
+ L N+ + N G + + + ++ F + IGT+ + G +F
Sbjct: 283 FNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCS 342
Query: 388 QEAPFANICLSNISL---SINPGSYNSWECSNIHGSSESVFPE-PCPELENSSSNSS--- 440
+ P I L ++ + S G +C N+ G+S P C EL +S+
Sbjct: 343 ERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECLELSTDMFSSAQLL 402
Query: 441 -STCFS 445
TC S
Sbjct: 403 EQTCMS 408
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Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1 | Back alignment and function description |
|---|
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 113/447 (25%), Positives = 186/447 (41%), Gaps = 82/447 (18%)
Query: 42 SITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKW-----LTGSFNLTSHL 96
++ ++GAVGDGK +T AF + K A L VP+ K L HL
Sbjct: 60 NVEQYGAVGDGKHDSTEAFATT---WNAACKKASAVLLVPANKKFFVNNLVFRGPCQPHL 116
Query: 97 TLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTI 156
+ ++ I+ +P+ W + K + L D + G G I
Sbjct: 117 SFKVD--GTIVAQPDPARW-----------------KNSKIWLQFAQLTDFNLMG-TGVI 156
Query: 157 DGQGSVWW----DWFSSQSL--NYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSN 210
DGQG WW + +++ + +RP ++ S++V V LT +N+P +++ C
Sbjct: 157 DGQGQQWWAGQCKVVNGRTVCNDRNRPTAIKIDYSKSVTVKELTLMNSPEFHLVFGECEG 216
Query: 211 VHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTT 270
V IQ + + AP +SP T GI +S IE C+I G D I++ +G ++
Sbjct: 217 VKIQGLKIKAPRDSPNTDGIDIFASKRFHIEKCVIGTGDDCIAIGTG-----------SS 265
Query: 271 DVHIRRVLLQSSSGSSV-AFGSEMSGG-ISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQ 328
++ I+ ++ G S+ + G + S +S+V V + D+ NG+ +T +G G
Sbjct: 266 NITIKDLICGPGHGISIGSLGRDNSRAEVSHVHVNRAKFIDTQNGLRIKTWQGGSGLASY 325
Query: 329 IVISDAELYN------INVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAG 382
I + E+ N IN + C S A+ I +T+K+I GT+ T A
Sbjct: 326 ITYENVEMINSENPILINQFY-----CTSASACQNQRSAV-QIQGVTYKNIHGTSATAAA 379
Query: 383 -NFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHG--------SSESVFPEPCP--- 430
P I LSN+SL + G S N G + +++ P P P
Sbjct: 380 IQLMCSDSVPCTGIQLSNVSLKLTSGKPASCVDKNARGFYSGRLIPTCKNLRPGPSPKEF 439
Query: 431 -----------ELENSSSNSSSTCFSL 446
E + + + STC SL
Sbjct: 440 ELQQQPTTVMDENKGACAKGDSTCISL 466
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Chamaecyparis obtusa (taxid: 13415) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1 | Back alignment and function description |
|---|
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 106/418 (25%), Positives = 170/418 (40%), Gaps = 56/418 (13%)
Query: 42 SITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGS---FNLTSHLTL 98
++ ++GAVGDGK T AF A ++ K A L VP K + FN
Sbjct: 60 NVEKYGAVGDGKHDCTEAFSTA---WQAACKKPSAMLLVPGNKKFVVNNLFFNGPCQPHF 116
Query: 99 FLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDG 158
+ +I QNP+ W + + + G+ L G IDG
Sbjct: 117 TFKVDGIIAAYQNPASWKNNRIWLQFAK------------LTGFTLM------GKGVIDG 158
Query: 159 QGSVWW----DWFSSQSL--NYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVH 212
QG WW W + + + + RP ++F S +++ L +N+P +++ C V
Sbjct: 159 QGKQWWAGQCKWVNGREICNDRDRPTAIKFDFSTGLIIQGLKLMNSPEFHLVFGNCEGVK 218
Query: 213 IQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDV 272
I IS+ AP +SP T GI +S N ++ I G D +++ +G ++++
Sbjct: 219 IIGISITAPRDSPNTDGIDIFASKNFHLQKNTIGTGDDCVAIGTG-----------SSNI 267
Query: 273 HIRRVLLQSSSGSSV-AFGSEMSGG-ISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIV 330
I ++ G S+ + G E S +S V V D+ NG+ +T +G G I+
Sbjct: 268 VIEDLICGPGHGISIGSLGRENSRAEVSYVHVNGAKFIDTQNGLRIKTWQGGSGMASHII 327
Query: 331 ISDAELYN------INVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAG-N 383
+ E+ N IN + C S A+ I +T+K+I GT+ T A
Sbjct: 328 YENVEMINSENPILINQFY-----CTSASACQNQRSAV-QIQDVTYKNIRGTSATAAAIQ 381
Query: 384 FTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGSSESVFPEPCPELENSSSNSSS 441
P +I LS+ISL + G S N +G C L S+ S
Sbjct: 382 LKCSDSMPCKDIKLSDISLKLTSGKIASCLNDNANGYFSGHVIPACKNLSPSAKRKES 439
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Cryptomeria japonica (taxid: 3369) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q8RY29|ADPG2_ARATH Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 142/314 (45%), Gaps = 45/314 (14%)
Query: 38 PHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGK-WLTGSFNLTSHL 96
P +VS+++FGA GDGKT +T AF NA + K+ + G L VP G +L S LT
Sbjct: 65 PTTVSVSDFGAKGDGKTDDTQAFVNA--WKKACSSNGAVNLLVPKGNTYLLKSIQLTGPC 122
Query: 97 TLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDV----VVTGD 152
L I G+ + S YK + M V V GD
Sbjct: 123 NSILT--VQIFGTLSASQ----------------KRSDYKDISKWIMFDGVNNLSVDGGD 164
Query: 153 NGTIDGQGSVWWDWFSSQSLNYSR-----PHLVEFISSENVVVSNLTFLNAPAYNIHPVY 207
G +DG G WW +S N ++ P + F +S++++V NL NA I
Sbjct: 165 TGVVDGNGETWWQ--NSCKRNKAKPCTKAPTALTFYNSKSLIVKNLKVRNAQQIQISIEK 222
Query: 208 CSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGR 267
CSNV + N+ V AP +SP T GI ++ N+ + + II G D IS++SG
Sbjct: 223 CSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSESIIGTGDDCISIESG---------- 272
Query: 268 PTTDVHIRRVLLQSSSGSSV-AFGSEMSGG-ISNVQVEKIHLYDSLNGIEFRTTKGRGGY 325
+ +V I + G S+ + G + S +S V V+ L + NG+ +T +G G
Sbjct: 273 -SQNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGT 331
Query: 326 IRQIVISDAELYNI 339
I+ + ++ N+
Sbjct: 332 ASNIIFQNIQMDNV 345
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Polygalacturonase involved in cell separation in the final stages of pod shatter, in anther dehiscence and in floral organ abscission. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q9FY19|PGLR2_JUNAS Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 113/430 (26%), Positives = 178/430 (41%), Gaps = 87/430 (20%)
Query: 42 SITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLT------SH 95
++ +GAVGDGK +T AF+ + +K A VP+ K + NL H
Sbjct: 61 NVEHYGAVGDGKHDSTDAFEKT---WNAACNKLSAVFLVPANKKFVVN-NLVFYGPCQPH 116
Query: 96 LTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGT 155
+ ++ I +P+ W + K ++ L D + G G
Sbjct: 117 FSFKVD--GTIAAYPDPAKW-----------------KNSKIWMHFARLTDFNLMG-TGV 156
Query: 156 IDGQGSVWWDWFSSQSLN-------YSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYC 208
IDGQG+ WW +++N RP ++ S++V V LT N+P +++ C
Sbjct: 157 IDGQGNRWWS-DQCKTINGRTVCNDKGRPTAIKIDFSKSVTVKELTLTNSPEFHLVFGEC 215
Query: 209 SNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRP 268
V IQ I + AP +SP T GI +S IE C I G D +++ +G
Sbjct: 216 DGVKIQGIKIKAPRDSPNTDGIDIFASKRFEIEKCTIGTGDDCVAVGTG----------- 264
Query: 269 TTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHL-----YDSLNGIEFRTTKGRG 323
++++ I+ L G ++ GS + G S +V +HL D+ NG+ +T +G
Sbjct: 265 SSNITIKD--LTCGPGHGMSIGS-LGKGNSRSEVSFVHLDGAKFIDTQNGLRIKTWQGGS 321
Query: 324 GYIRQIVISDAELYN------IN----VAFGACGNCGSHPDDDFDPDALPAIDQITFKDI 373
G I + E+ N IN + AC N + I +TFK+I
Sbjct: 322 GLASHITYENVEMINAENPILINQFYCTSAAACKN----------QRSAVKIQDVTFKNI 371
Query: 374 IGTNITIAG-NFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHG--------SSESV 424
GT+ T A P +NI LSN+ L + G + N +G S +S+
Sbjct: 372 HGTSATTAAIQLMCSDSVPCSNIKLSNVFLKLTSGKVATCVNKNANGYYTNPLNPSCKSL 431
Query: 425 FPEPCP-ELE 433
P P ELE
Sbjct: 432 HPGRTPKELE 441
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Juniperus ashei (taxid: 13101) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 108/464 (23%), Positives = 191/464 (41%), Gaps = 84/464 (18%)
Query: 5 VALLLLLALCSAILINGEVSDGQCD----------------------DQPTLDPRPHSVS 42
+ +LL+L+LC A+ N + G D D+ TL+ +VS
Sbjct: 12 LCVLLMLSLCKALSSNVDDGYGHEDGSFESDSLLKLNNDDVLSLISSDETTLEA--STVS 69
Query: 43 ITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEK 102
++ FGA GDGKT +T AF+ A + K+ + G VP GK +L K
Sbjct: 70 VSNFGAKGDGKTDDTQAFKKA--WKKACSTNGVTTFLVPKGK-------------TYLLK 114
Query: 103 GAVILG-SQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDV----VVTGDNGTID 157
G ++ ++ ++ L + + + YK + +L DV + G G I+
Sbjct: 115 STRFRGPCKSLRNFQILGTLSASTKRSD-----YKDKNHWLILEDVNNLSIDGGSTGIIN 169
Query: 158 GQGSVWWDWFSSQSLNYSRP-----HLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVH 212
G G WW +S ++ S+P + + +N+ V NL NA I C+ V
Sbjct: 170 GNGKTWWQ--NSCKIDKSKPCTKAPTALTLYNLKNLNVKNLRVKNAQQIQISIEKCNKVE 227
Query: 213 IQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDV 272
+ N+ + AP +SP T GI ++ N+ + + I G D IS++ G T ++
Sbjct: 228 VSNVEITAPGDSPNTDGIHITNTQNIRVSNSDIGTGDDCISIEDG-----------TQNL 276
Query: 273 HIRRVLLQSSSGSSV-AFGSEMSGG-ISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIV 330
I + G S+ + G + S +S + V+ +S NG+ +T +G G + I
Sbjct: 277 QIFDLTCGPGHGISIGSLGDDNSKAYVSGINVDGAKFSESDNGVRIKTYQGGSGTAKNIK 336
Query: 331 ISDAELYNIN----VAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT-IAGNFT 385
+ + N+ + C D D ++ + + +K+I GT+ T +A
Sbjct: 337 FQNIRMENVKNPIIIDQDYC-----DKDKCEDQESAVQVKNVVYKNISGTSATDVAITLN 391
Query: 386 GIQEAPFANICLSNISLSINPGSYNSWECSNIHGSSESVFPEPC 429
++ P I L N+ + S C N + ++ C
Sbjct: 392 CSEKYPCQGIVLENVKIKGGTAS-----CKNANVKNQGTVSPKC 430
|
Polygalacturonase involved in cell separation in the final stages of pod shatter and in anther dehiscence. Not involved in floral organ abscission. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 101/409 (24%), Positives = 166/409 (40%), Gaps = 61/409 (14%)
Query: 40 SVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTG--SFNLTSHLT 97
+V++ +FGA GDG+ +T AF+ A + + + A L VP +L SF+
Sbjct: 89 TVNVDDFGAKGDGRD-DTKAFEKA--WKAACSSTSSAVLLVPKKNYLVRPISFSGPCKSG 145
Query: 98 LFLEKGAVILGSQNPS-------HWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVT 150
L ++ I S + S HW V D + +++ V
Sbjct: 146 LTMQIYGTIEASDDRSDYRKDGRHWLVFDSV-----------------------QNLRVE 182
Query: 151 GDNGTIDGQGSVWWDWFSSQSLNYS-----RPHLVEFISSENVVVSNLTFLNAPAYNIHP 205
G GTI+G G +WW +S N + P + F S++V+V NL NA ++
Sbjct: 183 G-GGTINGNGKIWWQ--NSCKTNKALPCKDAPTALTFYKSKHVIVKNLKIENAQQIHVSF 239
Query: 206 VYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAY 265
C NV N+ V AP SP T GI + N+ I C+I G D IS+ +G +
Sbjct: 240 DNCVNVQASNLMVTAPENSPNTDGIHVTGTQNIHISSCVIGTGDDCISIVNGSRK----- 294
Query: 266 GRPTTDVHIRRVLLQSSSGSSVAFGSEMSGG----ISNVQVEKIHLYDSLNGIEFRTTKG 321
+R + G ++ GS G +S+V V L + NG+ +T +G
Sbjct: 295 --------VRVNDITCGPGHGISIGSLGYGNSEAHVSDVVVNGAKLCGTTNGVRIKTWQG 346
Query: 322 RGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT-I 380
G I + E++N+ N + + + + +++I GT + +
Sbjct: 347 GSGSASNIKFQNVEMHNVENPIIIDQNYCDQDKPCQEQSSAVQVKNVVYQNIKGTCASNV 406
Query: 381 AGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGSSESVFPEPC 429
A F + P I L ++ L I G+ C+N+ S V C
Sbjct: 407 AITFDCSKRFPCQGIVLEDVDLEIEGGAAAKALCNNVELSETGVVSPHC 455
|
Acts in concert with the pectinesterase, in the ripening process. Is involved in cell wall metabolism, specifically in polyuronide degradation. Actinidia deliciosa (taxid: 3627) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q949Z1|PGLR4_ARATH Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 136/315 (43%), Gaps = 51/315 (16%)
Query: 43 ITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHL------ 96
+T FGAVGDG +T AFQ+A + + A + G L P G G F +TS +
Sbjct: 82 VTSFGAVGDGSCDDTAAFQDA--WKAACAVESGVVL-APEG----GVFKITSTIFSGPCK 134
Query: 97 -TLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGT 155
L + V++ P W P + K+ + D GT
Sbjct: 135 PGLVFQLDGVLMPPDGPEEW---------------PEKDNKNQWLVFYRLDGFTFSGKGT 179
Query: 156 IDGQGSVWWDW---------FSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPV 206
++G G WWD SS S + P ++ F S N+ V L N+P +++
Sbjct: 180 VEGNGQKWWDLPCKPHRGPDGSSSSGPCASPTMIRFFMSNNIEVKGLRIQNSPQFHMKFD 239
Query: 207 YCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYG 266
C V I I + +P SP T GI ++ +V I + +++ G D IS+ +G
Sbjct: 240 GCQGVLINEIQISSPKLSPNTDGIHLGNTRSVGIYNSVVSNGDDCISIGTG--------- 290
Query: 267 RPTTDVHIRRVLLQSSSGSSV-AFGSEMSGG-ISNVQVEKIHLYDSLNGIEFRTTKGRGG 324
+DV I+ V S G S+ + G S +SN+ V + DS NG+ +T +G G
Sbjct: 291 --CSDVDIQGVTCGPSHGISIGSLGVHNSQACVSNITVRNTVIRDSDNGLRVKTWQGGTG 348
Query: 325 YIRQIVISDAELYNI 339
+ ++ + ++ N+
Sbjct: 349 SVSNLLFENIQMENV 363
|
Polygalacturonase not involved in the final stages of pod shatter. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|P49062|PGLR1_ARATH Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 108/389 (27%), Positives = 167/389 (42%), Gaps = 60/389 (15%)
Query: 5 VALLLLLALC-SAILINGEVSDGQCDDQPTLDPRPHSVSITEFGAVGDGKTLNTLAFQNA 63
V L+L+AL + + NGE G+ P IT+FGAVGDG T AF N
Sbjct: 16 VGSLILMALVFGSCVANGEYLGGR-RGLAANSGNPTVYDITKFGAVGDGSTNTFKAFLNT 74
Query: 64 IFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHW--DVVDPL 121
+++ A L VP G +L G VI S +V+ +
Sbjct: 75 --WIQVCDSPVPATLLVPKGTFLAG---------------PVIFAGPCKSKVTVNVIGTI 117
Query: 122 PSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWW--DWFSSQSLNYSRPHL 179
+ G P ++ ++V+TG GT G+G W D + P
Sbjct: 118 IATTSGYATPEWFLFERVD-----NLVLTG-TGTFHGKGEAVWKADGCGKKVQCNLPPTS 171
Query: 180 VEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVC 239
++F + +NV ++ ++ +NA A+++ V NV+IQNI + AP ESP T GI ++DNV
Sbjct: 172 LKFRNMKNVEINGISSVNAKAFHMFLVKTENVNIQNIKLTAPAESPNTDGIHLSNADNVS 231
Query: 240 IEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSV-AFGS-EMSGGI 297
I D IA G D +S+ GR + +V + RV+ G SV + G + +
Sbjct: 232 ILDSTIATGDDCVSV-----------GRGSNNVTVERVICGPGHGLSVGSLGKYKNEEDV 280
Query: 298 SNVQVEKIHLYDSLNGIEFRTTKGRG-------GYIRQIVISDAELYNINVAFGACGNCG 350
S + V + ++ NG+ +T G + I+ S I+ +G+ G
Sbjct: 281 SGIHVNNCTMIETDNGLRIKTWGGSDPSKAVDIKFENIIMQSVKNPIIIDQNYGSRGG-- 338
Query: 351 SHPDDDFDPDALPAIDQITFKDIIGTNIT 379
D+ AI I FK+I GT IT
Sbjct: 339 ---------DSQVAISDILFKNIRGTTIT 358
|
May function in depolymerizing pectin during pollen development, germination, and tube growth. Acts as an exo-polygalacturonase. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 6 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 456 | ||||||
| 225431820 | 457 | PREDICTED: probable polygalacturonase-li | 0.942 | 0.940 | 0.790 | 0.0 | |
| 296083315 | 482 | unnamed protein product [Vitis vinifera] | 0.910 | 0.860 | 0.802 | 0.0 | |
| 255551873 | 454 | Polygalacturonase, putative [Ricinus com | 0.991 | 0.995 | 0.758 | 0.0 | |
| 224130360 | 450 | predicted protein [Populus trichocarpa] | 0.982 | 0.995 | 0.764 | 0.0 | |
| 356529330 | 452 | PREDICTED: probable polygalacturonase-li | 0.962 | 0.971 | 0.746 | 0.0 | |
| 224107034 | 435 | predicted protein [Populus trichocarpa] | 0.925 | 0.970 | 0.787 | 0.0 | |
| 356558153 | 579 | PREDICTED: probable polygalacturonase-li | 0.958 | 0.754 | 0.744 | 0.0 | |
| 357478841 | 459 | hypothetical protein MTR_4g120730 [Medic | 0.953 | 0.947 | 0.733 | 0.0 | |
| 356564613 | 460 | PREDICTED: probable polygalacturonase-li | 0.953 | 0.945 | 0.704 | 0.0 | |
| 356519942 | 449 | PREDICTED: probable polygalacturonase-li | 0.953 | 0.968 | 0.709 | 0.0 |
| >gi|225431820|ref|XP_002273305.1| PREDICTED: probable polygalacturonase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/430 (79%), Positives = 385/430 (89%)
Query: 1 MKMPVALLLLLALCSAILINGEVSDGQCDDQPTLDPRPHSVSITEFGAVGDGKTLNTLAF 60
MKM + LL++L L +A+ NG+ GQC + TLDPRPHSVSI EFGAVGDGKTLNT+AF
Sbjct: 1 MKMLLPLLVILVLSNAVESNGQERGGQCTNSLTLDPRPHSVSILEFGAVGDGKTLNTIAF 60
Query: 61 QNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDP 120
QNAIFYLKSFADKGGAQLYVP GKWLTGSFNLTSHLTLFLE+GAVILGSQ+PSHW+V++P
Sbjct: 61 QNAIFYLKSFADKGGAQLYVPPGKWLTGSFNLTSHLTLFLERGAVILGSQDPSHWEVIEP 120
Query: 121 LPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLV 180
LPSYGRGIELPG RY+SLINGYMLRDVV+TGDNGTI+GQGSVWWDWF+S SLNYSRPHLV
Sbjct: 121 LPSYGRGIELPGGRYRSLINGYMLRDVVITGDNGTINGQGSVWWDWFTSHSLNYSRPHLV 180
Query: 181 EFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCI 240
EF++S NVVVSNLTFLNAPAYNIHPVYCSNV +QNISV+APPESPYTVGIVPDSSD+ CI
Sbjct: 181 EFLASTNVVVSNLTFLNAPAYNIHPVYCSNVRVQNISVYAPPESPYTVGIVPDSSDSTCI 240
Query: 241 EDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNV 300
EDC IAMGHDAI+LKSGWDEYGIAYGRPTT+VHIRRV LQSSSGSS+AFGSEMSGGISNV
Sbjct: 241 EDCSIAMGHDAIALKSGWDEYGIAYGRPTTNVHIRRVNLQSSSGSSLAFGSEMSGGISNV 300
Query: 301 QVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPD 360
VE++HLY+S +GIEFRTTKGRGGYI++I+ISD + NI+ AF A G GSHPDD FDP+
Sbjct: 301 CVEQVHLYNSFSGIEFRTTKGRGGYIQEIIISDVAMENIHTAFSATGQIGSHPDDHFDPN 360
Query: 361 ALPAIDQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGS 420
ALP +D IT +++IGTNITIAG+FTGIQE+PF +ICLSNISLS P + SW CSN+ G
Sbjct: 361 ALPVLDHITLQNVIGTNITIAGSFTGIQESPFTSICLSNISLSTTPPASISWVCSNVSGF 420
Query: 421 SESVFPEPCP 430
S+ VFPEPCP
Sbjct: 421 SQWVFPEPCP 430
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296083315|emb|CBI22951.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/415 (80%), Positives = 374/415 (90%)
Query: 16 AILINGEVSDGQCDDQPTLDPRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGG 75
A+ NG+ GQC + TLDPRPHSVSI EFGAVGDGKTLNT+AFQNAIFYLKSFADKGG
Sbjct: 14 AVESNGQERGGQCTNSLTLDPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGG 73
Query: 76 AQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRY 135
AQLYVP GKWLTGSFNLTSHLTLFLE+GAVILGSQ+PSHW+V++PLPSYGRGIELPG RY
Sbjct: 74 AQLYVPPGKWLTGSFNLTSHLTLFLERGAVILGSQDPSHWEVIEPLPSYGRGIELPGGRY 133
Query: 136 KSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTF 195
+SLINGYMLRDVV+TGDNGTI+GQGSVWWDWF+S SLNYSRPHLVEF++S NVVVSNLTF
Sbjct: 134 RSLINGYMLRDVVITGDNGTINGQGSVWWDWFTSHSLNYSRPHLVEFLASTNVVVSNLTF 193
Query: 196 LNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLK 255
LNAPAYNIHPVYCSNV +QNISV+APPESPYTVGIVPDSSD+ CIEDC IAMGHDAI+LK
Sbjct: 194 LNAPAYNIHPVYCSNVRVQNISVYAPPESPYTVGIVPDSSDSTCIEDCSIAMGHDAIALK 253
Query: 256 SGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIE 315
SGWDEYGIAYGRPTT+VHIRRV LQSSSGSS+AFGSEMSGGISNV VE++HLY+S +GIE
Sbjct: 254 SGWDEYGIAYGRPTTNVHIRRVNLQSSSGSSLAFGSEMSGGISNVCVEQVHLYNSFSGIE 313
Query: 316 FRTTKGRGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIG 375
FRTTKGRGGYI++I+ISD + NI+ AF A G GSHPDD FDP+ALP +D IT +++IG
Sbjct: 314 FRTTKGRGGYIQEIIISDVAMENIHTAFSATGQIGSHPDDHFDPNALPVLDHITLQNVIG 373
Query: 376 TNITIAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGSSESVFPEPCP 430
TNITIAG+FTGIQE+PF +ICLSNISLS P + SW CSN+ G S+ VFPEPCP
Sbjct: 374 TNITIAGSFTGIQESPFTSICLSNISLSTTPPASISWVCSNVSGFSQWVFPEPCP 428
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255551873|ref|XP_002516982.1| Polygalacturonase, putative [Ricinus communis] gi|223544070|gb|EEF45596.1| Polygalacturonase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/456 (75%), Positives = 402/456 (88%), Gaps = 4/456 (0%)
Query: 3 MPVALLLLLALCSAILINGEVSDGQCDDQPTLDPRPHSVSITEFGAVGDGKTLNTLAFQN 62
MPVALLLLLAL +AI+I GE S GQCD++P+LDPRPHSVSI EFGAVGDGKTLNT++FQN
Sbjct: 1 MPVALLLLLALSNAIVIYGEESSGQCDNKPSLDPRPHSVSILEFGAVGDGKTLNTISFQN 60
Query: 63 AIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLP 122
AIFYLKSFADKGGA+LYVP G+WLTGSFNLTSHLTLFLEKGAVILGSQ+PSH+D+++PLP
Sbjct: 61 AIFYLKSFADKGGAKLYVPPGRWLTGSFNLTSHLTLFLEKGAVILGSQDPSHYDLIEPLP 120
Query: 123 SYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEF 182
SYGRGIELPG RY+SLINGY LRDVV+TGDNGTIDGQGSVWWDWF+S SLNYSRPHLVEF
Sbjct: 121 SYGRGIELPGGRYRSLINGYKLRDVVITGDNGTIDGQGSVWWDWFNSHSLNYSRPHLVEF 180
Query: 183 ISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIED 242
I SE +VVSNLTFLNAPAYNIHPVYCSNV +QN+S+ APPESP T+GIVPDSS+NVCIE+
Sbjct: 181 IESERIVVSNLTFLNAPAYNIHPVYCSNVLVQNMSLSAPPESPQTIGIVPDSSNNVCIEE 240
Query: 243 CIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQV 302
II MG+DAISLKSGWDEYGIAY R T DVHIRRV LQSSSGSS+AFGSEMSGGISNV V
Sbjct: 241 SIIKMGYDAISLKSGWDEYGIAYDRATRDVHIRRVHLQSSSGSSIAFGSEMSGGISNVHV 300
Query: 303 EKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDAL 362
E++HLY+S +GI FRTTKGRGGYI++I ISD EL NIN+A GA G+ G HPDD FDP A+
Sbjct: 301 EQVHLYNSFSGIGFRTTKGRGGYIKRIFISDVELENINLALGAIGDHGLHPDDKFDPKAV 360
Query: 363 PAIDQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGSSE 422
P +DQIT +++ GTNI+ AGNFTGIQ++PF ++CL NI+L ++ S NSW CSN+ G S+
Sbjct: 361 PVVDQITLQNLTGTNISTAGNFTGIQDSPFTSLCLFNITLMVS--SSNSWTCSNVIGYSD 418
Query: 423 SVFPEPCPELENSSSNSSSTCFS--LIRYYGRASFL 456
SVFP PCPEL++ SNSSS C+S L+ YG+++ L
Sbjct: 419 SVFPVPCPELKSPYSNSSSACYSLLLLNSYGKSASL 454
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130360|ref|XP_002328589.1| predicted protein [Populus trichocarpa] gi|222838571|gb|EEE76936.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/454 (76%), Positives = 396/454 (87%), Gaps = 6/454 (1%)
Query: 1 MKMPVALLLLLALCSAILINGEVSDGQCDDQPTLDPRPHSVSITEFGAVGDGKTLNTLAF 60
MKMPVA+LLLLAL AI I+ E S C +P+L PRPHSVSI EFGAVGDGKTLNTLAF
Sbjct: 1 MKMPVAVLLLLALSIAIRIDAEESSEVCGFKPSLKPRPHSVSILEFGAVGDGKTLNTLAF 60
Query: 61 QNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDP 120
QNAIFYLKSF DKGGAQLYVP GKWLTGSF+LTSHLTLF+EKGAVILGSQ+PSHWD+VDP
Sbjct: 61 QNAIFYLKSFTDKGGAQLYVPPGKWLTGSFSLTSHLTLFVEKGAVILGSQDPSHWDLVDP 120
Query: 121 LPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLV 180
LPSYGRGIELPG+RY+SLING ML DVVVTGDNGTIDGQGSVWWDWF S SLNYSRPHLV
Sbjct: 121 LPSYGRGIELPGKRYQSLINGDMLHDVVVTGDNGTIDGQGSVWWDWFESHSLNYSRPHLV 180
Query: 181 EFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCI 240
EF SS+ VVVSNLTFLNAPAY+IHPVYCSNV +QNISV AP ESPYT+GIVPDSS+NVCI
Sbjct: 181 EFTSSDYVVVSNLTFLNAPAYSIHPVYCSNVVVQNISVSAPGESPYTIGIVPDSSNNVCI 240
Query: 241 EDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNV 300
ED I +G+DAISLKSGWDEYGIAY RPTTDV+IRRV LQSSSGSSVAFGSEMSGGISNV
Sbjct: 241 EDSRIEVGYDAISLKSGWDEYGIAYDRPTTDVYIRRVYLQSSSGSSVAFGSEMSGGISNV 300
Query: 301 QVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPD 360
VE++H+Y+S +GIEFRTTKGRGGYI++I+ISD EL N N AFGA G+CGSHPDD+FDP+
Sbjct: 301 HVEQVHIYNSFSGIEFRTTKGRGGYIKRIIISDVELKNTNTAFGAIGDCGSHPDDNFDPN 360
Query: 361 ALPAIDQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGS 420
A+P +DQIT + +IG+NIT+AGNFTG+ E+PF ++CL N+SL+I + + W CSN+ G
Sbjct: 361 AIPVLDQITLQGVIGSNITMAGNFTGLAESPFTSLCLFNVSLAIR-NTLSPWTCSNVVGF 419
Query: 421 SESVFPEPCPELENSSSNSSSTCFSLIRYYGRAS 454
SESV PEPCPELE SSS C+SL+ YG+++
Sbjct: 420 SESVSPEPCPELE-----SSSVCYSLLNSYGKST 448
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529330|ref|XP_003533248.1| PREDICTED: probable polygalacturonase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/441 (74%), Positives = 384/441 (87%), Gaps = 2/441 (0%)
Query: 15 SAILINGEVSDGQCDDQPTLDPRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKG 74
+A+ +NG+ GQC PTLDPRPHSVSI EFGAVGDGKTLNT+AFQNAIFYLKSFADKG
Sbjct: 13 NAVRVNGD--GGQCGSNPTLDPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKG 70
Query: 75 GAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRR 134
GAQLYVP GKWLTGSFNLTSHLTLFLEKGAV++G+Q+PSHWDVV+PLPSYGRG+E+PG R
Sbjct: 71 GAQLYVPPGKWLTGSFNLTSHLTLFLEKGAVLIGTQDPSHWDVVEPLPSYGRGLEVPGGR 130
Query: 135 YKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLT 194
Y+SLINGYML DVVVTG+NGTIDG G VWWDW+S+ SLN+SRPHLVEF++S+ VVVSNLT
Sbjct: 131 YQSLINGYMLHDVVVTGNNGTIDGMGMVWWDWYSTHSLNHSRPHLVEFVASDYVVVSNLT 190
Query: 195 FLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISL 254
FLNAPAY+IHPVYCS+VHIQN+S+ PPESPYTVGIVPDSSDNVCIEDCI+AMG DAISL
Sbjct: 191 FLNAPAYSIHPVYCSHVHIQNVSISTPPESPYTVGIVPDSSDNVCIEDCIVAMGFDAISL 250
Query: 255 KSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGI 314
KSGWDEYGIAYGRPT +VHIRRV L + SGS++AFGS+MSGGISNV VE HL++S +GI
Sbjct: 251 KSGWDEYGIAYGRPTENVHIRRVQLHAFSGSALAFGSDMSGGISNVLVEHAHLFNSNSGI 310
Query: 315 EFRTTKGRGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDII 374
EFRTTKGRGGY+++IV+SD ++ N++ A A GNCGSHPDD FDP+ALP +D IT KD+I
Sbjct: 311 EFRTTKGRGGYMKEIVMSDIQMENVHTAIAATGNCGSHPDDKFDPNALPHLDHITLKDVI 370
Query: 375 GTNITIAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGSSESVFPEPCPELEN 434
GTNITIAGN GI E+PF NICLSNI+LS N S +W CSN+ G S+SV PEPCPEL N
Sbjct: 371 GTNITIAGNLAGIDESPFTNICLSNITLSTNSVSPITWACSNVSGFSDSVLPEPCPELGN 430
Query: 435 SSSNSSSTCFSLIRYYGRASF 455
+S +SSS+CF L+ G+ +
Sbjct: 431 TSYDSSSSCFYLLSVSGKTAL 451
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224107034|ref|XP_002314352.1| predicted protein [Populus trichocarpa] gi|222863392|gb|EEF00523.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/423 (78%), Positives = 375/423 (88%), Gaps = 1/423 (0%)
Query: 16 AILINGEVSDGQCDDQPTLDPRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGG 75
AI I+ E S G CD +P L PRPHSVSI EFGAVGDGKTLNTLAFQNAIFYLKSF DKGG
Sbjct: 14 AIRIDAEESSGVCDFKPGLKPRPHSVSILEFGAVGDGKTLNTLAFQNAIFYLKSFTDKGG 73
Query: 76 AQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRY 135
AQLYVP GKWLTGSF+LTSHLTLFLEKGAVILGSQ+PSHWD+VDPLPSYGRGIELPG+RY
Sbjct: 74 AQLYVPPGKWLTGSFSLTSHLTLFLEKGAVILGSQDPSHWDLVDPLPSYGRGIELPGKRY 133
Query: 136 KSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTF 195
+SLING ML DVVVTGDNGTIDGQGSVWWDWF S SLNYSRPHLVEF SS+ VVVSNLTF
Sbjct: 134 RSLINGDMLTDVVVTGDNGTIDGQGSVWWDWFESHSLNYSRPHLVEFTSSDLVVVSNLTF 193
Query: 196 LNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLK 255
LNAPAYNIHPVYCSNV +QNISV AP ESPYT+GIVPDSS+NVCIED +I +G+DAISLK
Sbjct: 194 LNAPAYNIHPVYCSNVLVQNISVSAPGESPYTIGIVPDSSNNVCIEDSLIKVGYDAISLK 253
Query: 256 SGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIE 315
SGWDEYGIAY RPT DVHIRRV LQSSSGSS+AFGSEMSGGISNV VE+++LY+S +GIE
Sbjct: 254 SGWDEYGIAYDRPTQDVHIRRVYLQSSSGSSIAFGSEMSGGISNVYVEQVYLYNSFSGIE 313
Query: 316 FRTTKGRGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIG 375
FRTTKGRGGYI++I+IS+ EL NIN+AFGA G+CGSHPDD FDP+A+P +DQIT +++ G
Sbjct: 314 FRTTKGRGGYIKRIIISNVELKNINMAFGAIGDCGSHPDDSFDPNAIPILDQITLQNVTG 373
Query: 376 TNITIAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGSSESVFPEPCPELENS 435
+NIT+AGNFTG+ E+PF +ICL N+SL+I P + SW CSN+ G SE V PEPCPEL +S
Sbjct: 374 SNITMAGNFTGLAESPFTSICLFNVSLTI-PATSTSWTCSNVIGFSEFVSPEPCPELNSS 432
Query: 436 SSN 438
SN
Sbjct: 433 YSN 435
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356558153|ref|XP_003547372.1| PREDICTED: probable polygalacturonase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/439 (74%), Positives = 381/439 (86%), Gaps = 2/439 (0%)
Query: 15 SAILINGEVSDGQCDDQPTLDPRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKG 74
+A+ +NG + GQC P LDPRPHSVSI EFGAVGDGKTLNT+AFQNAIFYLKSFADKG
Sbjct: 140 NAVRVNG--NGGQCGSNPRLDPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKG 197
Query: 75 GAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRR 134
GAQLYVP GKWLTGSFNLTSHLTLFLEKGAVI+G+Q+PSHWDVV+PLPSYGRG+E+PG R
Sbjct: 198 GAQLYVPPGKWLTGSFNLTSHLTLFLEKGAVIIGTQDPSHWDVVEPLPSYGRGLEVPGGR 257
Query: 135 YKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLT 194
Y+SLINGYML DVVVTG+NGTIDG G VWWDW+S+ SLN+SRPHLVE ++S+ VVVSNLT
Sbjct: 258 YQSLINGYMLHDVVVTGNNGTIDGMGMVWWDWYSTHSLNHSRPHLVEIVASDYVVVSNLT 317
Query: 195 FLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISL 254
FLNAPAY+IHPVYCS+VHIQN+S+ PPESPYTVGIVPDSSDNVCIEDCI+AMG DAISL
Sbjct: 318 FLNAPAYSIHPVYCSHVHIQNVSISTPPESPYTVGIVPDSSDNVCIEDCIVAMGFDAISL 377
Query: 255 KSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGI 314
KSGWDEYGIAYGRPT +VHIRRV L + SGS++AFGS+MSGGISNV VE HL++S +GI
Sbjct: 378 KSGWDEYGIAYGRPTENVHIRRVHLHAFSGSALAFGSDMSGGISNVLVEHAHLFNSKSGI 437
Query: 315 EFRTTKGRGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDII 374
EFRTTKGRGGY+++IV+SD ++ N++ A A GNCGSHPDD FDP+ALP +D IT KD+
Sbjct: 438 EFRTTKGRGGYMKEIVMSDIQMENVHTAIAATGNCGSHPDDKFDPNALPHLDHITLKDVT 497
Query: 375 GTNITIAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGSSESVFPEPCPELEN 434
GTNI+IAGN GI+E+PF NICLSNI+LS N S +WECSN+ G S+SV PEPCPEL N
Sbjct: 498 GTNISIAGNIAGIEESPFTNICLSNITLSTNSVSPITWECSNVSGFSDSVLPEPCPELGN 557
Query: 435 SSSNSSSTCFSLIRYYGRA 453
S +SSS+CF L+ G+
Sbjct: 558 PSYDSSSSCFYLLSVSGKT 576
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357478841|ref|XP_003609706.1| hypothetical protein MTR_4g120730 [Medicago truncatula] gi|355510761|gb|AES91903.1| hypothetical protein MTR_4g120730 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/436 (73%), Positives = 370/436 (84%), Gaps = 1/436 (0%)
Query: 17 ILINGEVSDGQCDDQPTLDPRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGA 76
+ +NGE D QC P+L PRPHSVSI EFGAVGDGKTLNT+AFQNAIFYLKSFADKGGA
Sbjct: 16 VRVNGERGDRQCGFNPSLKPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGA 75
Query: 77 QLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYK 136
QLYVP G WLT SFNLTSHLTLFLEKGAVI+GSQ+ +WDV+DPLPSYGRG+E+PG RY+
Sbjct: 76 QLYVPPGTWLTQSFNLTSHLTLFLEKGAVIIGSQDHYNWDVLDPLPSYGRGLEVPGGRYQ 135
Query: 137 SLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFL 196
SLINGYML+DVV+TG+NGTIDG GS WW+ FSS SLNYSRPHLVE ++S +VVVSNLTFL
Sbjct: 136 SLINGYMLQDVVITGNNGTIDGMGSTWWESFSSHSLNYSRPHLVELVASTDVVVSNLTFL 195
Query: 197 NAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKS 256
NAPAYNIHPVYC NVHI NIS+ APPESPYTVGIVPDSSD+VCIEDC IA G+DAI+LKS
Sbjct: 196 NAPAYNIHPVYCRNVHIHNISIFAPPESPYTVGIVPDSSDHVCIEDCTIATGYDAIALKS 255
Query: 257 GWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEF 316
GWDEYGIAYGRPT +VHIRRV LQ+S GS++AFGS+MSGGISNV VE +HLY+S GIEF
Sbjct: 256 GWDEYGIAYGRPTENVHIRRVHLQASYGSTLAFGSDMSGGISNVFVEHVHLYNSKGGIEF 315
Query: 317 RTTKGRGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGT 376
RT +GRGGY++ I++SD E+ NI A A G CGSHPDD FDP+ALP +D F+DIIGT
Sbjct: 316 RTIRGRGGYMKDIILSDIEMKNIYRAISATGYCGSHPDDKFDPNALPLLDHFIFQDIIGT 375
Query: 377 NITIAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGSSESVFPEPCPELENSS 436
NITIAG+F G+QE+PF NICLSNI+LS+N S SWECSN+ G S+SV P PCP+L+ S
Sbjct: 376 NITIAGSFAGLQESPFTNICLSNITLSVNYASSTSWECSNVSGFSDSVLPIPCPDLD-SP 434
Query: 437 SNSSSTCFSLIRYYGR 452
SN SS+C S + G+
Sbjct: 435 SNYSSSCLSKLSMKGK 450
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356564613|ref|XP_003550546.1| PREDICTED: probable polygalacturonase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/440 (70%), Positives = 368/440 (83%), Gaps = 5/440 (1%)
Query: 17 ILINGEVSDGQCDDQPTLDPRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGA 76
+ +NG+ QC+ P L PRPH+VSI EFGAVGDGKTLNT+AFQNAIFYLKSFADKGGA
Sbjct: 26 VRVNGDSDGRQCEVNPALKPRPHTVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGA 85
Query: 77 QLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYK 136
QLYVP G WLT SFNLTSHLTLFLEKGAVILGSQ+P HW+VVDPLPSYGRG+E+PG RY+
Sbjct: 86 QLYVPPGTWLTQSFNLTSHLTLFLEKGAVILGSQDPFHWEVVDPLPSYGRGVEVPGGRYQ 145
Query: 137 SLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFL 196
SL+NGYML DVV+TG+NG IDG G WW+ FSS SLNYSRPHL+E ++S VVVSNLTFL
Sbjct: 146 SLVNGYMLHDVVITGNNGIIDGMGLGWWELFSSHSLNYSRPHLIELVASNRVVVSNLTFL 205
Query: 197 NAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKS 256
NAPAY+IHPVYCSNVHI N+S+ AP ESPYT+GIVPDSSD+VCIEDC+IA G+DAISLKS
Sbjct: 206 NAPAYSIHPVYCSNVHIHNVSISAPQESPYTIGIVPDSSDHVCIEDCVIATGYDAISLKS 265
Query: 257 GWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEF 316
GWDEYGIAYGRPT +VHIRRV LQ+ SGS++AFGS+MSGGISN+ VE +HLY+S +GIEF
Sbjct: 266 GWDEYGIAYGRPTENVHIRRVHLQAYSGSTIAFGSDMSGGISNILVENVHLYNSKSGIEF 325
Query: 317 RTTKGRGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGT 376
RT +GRGGY+++I+ISD E+ NI A A G CGSHPDD FDP+ALP +D I +D+IGT
Sbjct: 326 RTMRGRGGYMKEIIISDIEMENIYTAMAATGYCGSHPDDKFDPNALPLLDHIILQDMIGT 385
Query: 377 NITIAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGSSESVFPEPCPELENSS 436
NITIAG+F G+QE+PF NICLSN++LSIN S WECSN+ G S+SV P+PCP+LE
Sbjct: 386 NITIAGSFAGLQESPFTNICLSNVTLSINSVSSIPWECSNVSGFSDSVLPKPCPDLE--- 442
Query: 437 SNSSSTCFSLIRYYGRASFL 456
+ S C SL+ G+ + +
Sbjct: 443 --TLSDCLSLLSIKGKTAVM 460
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519942|ref|XP_003528627.1| PREDICTED: probable polygalacturonase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/440 (70%), Positives = 369/440 (83%), Gaps = 5/440 (1%)
Query: 17 ILINGEVSDGQCDDQPTLDPRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGA 76
+ +NG+ S QC+ P L PRPH+VSI EFGAVGDGKTLNT+AFQNAIFYLKSFADKGGA
Sbjct: 15 VRVNGDGSGRQCEINPALKPRPHTVSILEFGAVGDGKTLNTMAFQNAIFYLKSFADKGGA 74
Query: 77 QLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYK 136
QLYVP G WLT SFNLTSHLTLFLEKGAVILGSQ+P HW+VVDPLPSYGRG+E+PG RY+
Sbjct: 75 QLYVPPGTWLTQSFNLTSHLTLFLEKGAVILGSQDPFHWEVVDPLPSYGRGVEVPGGRYQ 134
Query: 137 SLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFL 196
SLING ML DVV+TG+NG IDG G WW+ FSS SLNYSRPHL+E ++S++VVVSNLTFL
Sbjct: 135 SLINGNMLHDVVITGNNGNIDGMGFAWWELFSSHSLNYSRPHLIELVASDHVVVSNLTFL 194
Query: 197 NAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKS 256
NAPAY+IHPVYCSNVHI N+S+ APPESP TVGIVPDSSD+VCIEDC+IA G+DAISLKS
Sbjct: 195 NAPAYSIHPVYCSNVHIHNVSISAPPESPNTVGIVPDSSDHVCIEDCVIATGYDAISLKS 254
Query: 257 GWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEF 316
GWDEYGIAYGRPT +VHIRRV LQ+SSGS++AFGS+MSGGISN+ VE +HLY+S +GIEF
Sbjct: 255 GWDEYGIAYGRPTENVHIRRVHLQASSGSTIAFGSDMSGGISNILVENVHLYNSKSGIEF 314
Query: 317 RTTKGRGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGT 376
RT +GRGGY+++I+ISD E+ NI A A G CGSHPDD FDP+ALP +D I +D+IGT
Sbjct: 315 RTMRGRGGYMKEIIISDIEMENIYTAIAATGYCGSHPDDKFDPNALPLLDHIILQDMIGT 374
Query: 377 NITIAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGSSESVFPEPCPELENSS 436
NITIAG+F G+QE+PF NICLSNI+LS N S WECSN+ G S+ V P+PCP+LE
Sbjct: 375 NITIAGSFAGLQESPFTNICLSNITLSTNSVSSIPWECSNVSGFSDYVLPKPCPDLE--- 431
Query: 437 SNSSSTCFSLIRYYGRASFL 456
+ S C SL+ G+ + +
Sbjct: 432 --TLSNCLSLLIIKGKTAVM 449
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 456 | ||||||
| TAIR|locus:2086740 | 455 | AT3G16850 [Arabidopsis thalian | 0.940 | 0.942 | 0.599 | 8.6e-143 | |
| TAIR|locus:2083383 | 446 | AT3G06770 [Arabidopsis thalian | 0.890 | 0.910 | 0.644 | 7.8e-142 | |
| TAIR|locus:504954979 | 449 | AT5G49215 [Arabidopsis thalian | 0.975 | 0.991 | 0.602 | 4.9e-140 | |
| TAIR|locus:2098038 | 471 | AT3G62110 [Arabidopsis thalian | 0.899 | 0.870 | 0.532 | 9.8e-119 | |
| TAIR|locus:2128524 | 444 | AT4G23820 [Arabidopsis thalian | 0.894 | 0.918 | 0.469 | 9.1e-100 | |
| TAIR|locus:2082787 | 476 | AT3G61490 [Arabidopsis thalian | 0.870 | 0.834 | 0.447 | 3.7e-96 | |
| TAIR|locus:2119156 | 475 | AT4G33440 [Arabidopsis thalian | 0.870 | 0.835 | 0.455 | 5.9e-96 | |
| TAIR|locus:2101313 | 469 | AT3G48950 [Arabidopsis thalian | 0.868 | 0.844 | 0.439 | 1e-93 | |
| TAIR|locus:2117964 | 495 | AT4G23500 [Arabidopsis thalian | 0.861 | 0.793 | 0.441 | 9e-93 | |
| TAIR|locus:2152980 | 449 | AT5G41870 [Arabidopsis thalian | 0.879 | 0.893 | 0.458 | 9e-93 |
| TAIR|locus:2086740 AT3G16850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1396 (496.5 bits), Expect = 8.6e-143, P = 8.6e-143
Identities = 259/432 (59%), Positives = 319/432 (73%)
Query: 1 MKMPVXXXXXXXXCSAILINGEVSDGQCDDQPTLDPRPHSVSITEFGAVGDGKTLNTLAF 60
MKMPV + +LI+GE ++ C + LDPRPHSVSI EFGAVGDGKTLNT+AF
Sbjct: 1 MKMPVALVWLLAF-TILLISGEGNNAICKENFKLDPRPHSVSILEFGAVGDGKTLNTIAF 59
Query: 61 QNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDP 120
QNA+FYLKSFADKGGAQLYVP GKWLTGSFNLTSHLTLFLEKGA IL S +PSHWDVV P
Sbjct: 60 QNAVFYLKSFADKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGATILASPDPSHWDVVSP 119
Query: 121 LPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLV 180
LPSYGRGIELPG+RY+SLING L DVV+TG+NGT DGQG+ WW+W S SLNYSRPH++
Sbjct: 120 LPSYGRGIELPGKRYRSLINGDNLIDVVITGENGTFDGQGAAWWEWLESGSLNYSRPHII 179
Query: 181 EFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCI 240
EF+SS+++++SNLTFLNAPA NIHPVYCS +HI+ + + +SP+ +G+ PDSSDNVCI
Sbjct: 180 EFVSSKHILISNLTFLNAPAINIHPVYCSQIHIRKVLIETSVDSPHVLGVAPDSSDNVCI 239
Query: 241 EDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQXXXXXXXXXXXXXXGGISNV 300
ED I +GHDA+SLKSGWD+YGI YGRPTT VHIR + L+ GG+S+V
Sbjct: 240 EDSTINVGHDAVSLKSGWDQYGIHYGRPTTAVHIRNLRLKSPTGAGISFGSEMSGGVSDV 299
Query: 301 QVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVAFGACGNCGSHXXXXXXXX 360
VE+++++ SL G+ FRTT+GRGGYIR I ISD +L +++ A A G+ GSH
Sbjct: 300 TVERLNIHSSLIGVAFRTTRGRGGYIRNITISDVDLTSVDTAIVANGHTGSHPDDKFDRD 359
Query: 361 XXXXXXQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGS 420
I ++ G +I +AGN TGI E+PF +ICL++I L S SW CSN+ G
Sbjct: 360 ALPVVTHIVMRNFTGVDIGVAGNLTGIGESPFTSICLADIHLQTR--SEESWICSNVSGF 417
Query: 421 SESVFPEPCPEL 432
S+ V PEPC EL
Sbjct: 418 SDDVSPEPCQEL 429
|
|
| TAIR|locus:2083383 AT3G06770 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1387 (493.3 bits), Expect = 7.8e-142, P = 7.8e-142
Identities = 263/408 (64%), Positives = 316/408 (77%)
Query: 28 CDD--QPTLDPRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKW 85
CD+ + +L RPHSVSIT+FGAVGDGKTLNTLAFQNA+FYL SFADKGGAQLYVP G W
Sbjct: 28 CDELGRRSLSTRPHSVSITDFGAVGDGKTLNTLAFQNAVFYLMSFADKGGAQLYVPPGHW 87
Query: 86 LTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLR 145
LTGSF+LTSHLTLFLE GAVI+ SQ+PSHW+VVDPLPSYGRGI+LPG+RYKSLING L
Sbjct: 88 LTGSFSLTSHLTLFLENGAVIVASQDPSHWEVVDPLPSYGRGIDLPGKRYKSLINGNKLH 147
Query: 146 DVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHP 205
DVVVTGDNGTIDGQG VWWD F+S SL Y+RPHL+EF+SSENV+VSNLTFLNAPAY+I+
Sbjct: 148 DVVVTGDNGTIDGQGLVWWDRFTSHSLKYNRPHLIEFLSSENVIVSNLTFLNAPAYSIYS 207
Query: 206 VYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAY 265
+Y S+V+I I H+ P+SPYT+GIVPDSSD VCI++ I +G+DAISLKSGWDEYGIAY
Sbjct: 208 IYSSHVYIHKILAHSSPKSPYTIGIVPDSSDYVCIQNSTINVGYDAISLKSGWDEYGIAY 267
Query: 266 GRPTTDVHIRRVLLQXXXXXXXXXXXXXXGGISNVQVEKIHLYDSLNGIEFRTTKGRGGY 325
RPT +VHIR V L+ GGIS+V V+ H++ SL GI FRTTKGRGGY
Sbjct: 268 SRPTENVHIRNVYLRGASGSSISFGSEMSGGISDVVVDNAHIHYSLTGIAFRTTKGRGGY 327
Query: 326 IRQIVISDAELYNINVAFGACGNCGSHXXXXXXXXXXXXXXQITFKDIIGTNITIAGNFT 385
I++I IS+ ++ I A A G+ GSH I +I G NI IAG
Sbjct: 328 IKEIDISNIDMLRIGTAIVANGSFGSHPDDKYDVNALPLVSHIRLSNISGENIGIAGKLF 387
Query: 386 GIQEAPFANICLSNISLSINPGSYNSWECSNIHGSSESVFPEPCPELE 433
GI+E+PF+++ LSN+SLS++ GS SW+CS ++GSSESV PEPCPEL+
Sbjct: 388 GIKESPFSSVTLSNVSLSMSSGSSVSWQCSYVYGSSESVIPEPCPELK 435
|
|
| TAIR|locus:504954979 AT5G49215 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1370 (487.3 bits), Expect = 4.9e-140, P = 4.9e-140
Identities = 277/460 (60%), Positives = 324/460 (70%)
Query: 1 MKMPVXXXXXXXXCSAILINGE-VSDGQ-CDDQPTLDPRPHSVSITEFGAVGDGKTLNTL 58
M + V S ILING G CD RPHSV IT+FGAVGDGKTLNTL
Sbjct: 1 MPVSVALVLLLTLSSVILINGRSYGVGNICDRGRRPSERPHSVKITDFGAVGDGKTLNTL 60
Query: 59 AFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVV 118
AFQNA+FYLKSFADKGGAQLYVP G+WLTGSFNLTSHLTLFLEK AVIL SQ+PSHW V
Sbjct: 61 AFQNAVFYLKSFADKGGAQLYVPPGRWLTGSFNLTSHLTLFLEKDAVILASQDPSHWQVT 120
Query: 119 DPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPH 178
D LPSYGRGI+LPG+RY SLING ML DVVVTGDNGTIDGQG VWWD F+S SL YSRPH
Sbjct: 121 DALPSYGRGIDLPGKRYMSLINGDMLHDVVVTGDNGTIDGQGLVWWDRFNSHSLEYSRPH 180
Query: 179 LVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNV 238
LVEF+S+ENV+VSNLTFLNAPAY IH VYC N++I ++ + PESPYT+GIVPDSS+NV
Sbjct: 181 LVEFVSAENVIVSNLTFLNAPAYTIHSVYCRNLYIHRVTANTCPESPYTIGIVPDSSENV 240
Query: 239 CIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQXXXXXXXXXXXXXXGGIS 298
CI++ I MG+DAISLKSG DEYG++Y RPT +V IR V L+ GGIS
Sbjct: 241 CIQESSINMGYDAISLKSGCDEYGLSYARPTANVQIRNVYLRAASGSSISFGSEMSGGIS 300
Query: 299 NVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVAFGACGNCGSHXXXXXX 358
+V+V H+++SL+GI FRTT GRGGYI++I IS+ + N+ AF A G+ G+H
Sbjct: 301 DVEVSDAHIHNSLSGIAFRTTNGRGGYIKEIDISNIHMVNVGTAFLANGSFGTHPDSGFD 360
Query: 359 XXXXXXXXQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLSI-NPGS-YNSWECSN 416
I DI+G NI+ AG F G +E+PF +I LSNISLSI N S +SW+CS
Sbjct: 361 ENAYPLVSHIRLHDIVGENISTAGYFFGTKESPFTSILLSNISLSIKNSASPADSWQCSY 420
Query: 417 IHGSSESVFPEPCPELEXXXXXXXXTCFSLIRYYGRASFL 456
+ GSSE V PEPC EL+ S YYGRA L
Sbjct: 421 VDGSSEFVVPEPCLELK-----------SFDSYYGRAEAL 449
|
|
| TAIR|locus:2098038 AT3G62110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1169 (416.6 bits), Expect = 9.8e-119, P = 9.8e-119
Identities = 220/413 (53%), Positives = 284/413 (68%)
Query: 37 RPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHL 96
RPHSVSITEFGAVGDG TLNT AFQNA+FYL SF+DKGGA+L+VP+G+WLTGSF+L SHL
Sbjct: 39 RPHSVSITEFGAVGDGVTLNTKAFQNALFYLNSFSDKGGAKLFVPAGQWLTGSFDLISHL 98
Query: 97 TLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTI 156
TL+L+KGA ILGS + +W VVDPLPSYGRG ELPGRR++SLI G L DVV+TG+NGTI
Sbjct: 99 TLWLDKGATILGSTSSENWPVVDPLPSYGRGRELPGRRHRSLIYGQNLTDVVITGENGTI 158
Query: 157 DGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNI 216
DGQG+VWWDWF + LNY+RPHLVE ++S +++SNLTFLN+P +NIHPVYC +V ++N+
Sbjct: 159 DGQGTVWWDWFRNGELNYTRPHLVELMNSTGLIISNLTFLNSPFWNIHPVYCRDVVVKNL 218
Query: 217 SVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRR 276
++ AP ESP T G+ PDSS NVCIEDC I G D +S+KSGWDEYGI+Y RP++ + I R
Sbjct: 219 TILAPLESPNTDGVDPDSSTNVCIEDCYIVTGDDLVSIKSGWDEYGISYARPSSKIKINR 278
Query: 277 VLLQXXXXXXXXXXXXXXGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAEL 336
+ Q GG+S + ++ +HL++S GI +T+ GRGGY+R + I + +L
Sbjct: 279 LTGQTTSSSGIAIGSEMSGGVSEIYIKDLHLFNSNTGIRIKTSAGRGGYVRNVHILNVKL 338
Query: 337 YNINVAFGACGNCGSHXXXXXXXXXXXXXXQITFKDIIGTNITIAGNFTGIQEAPFANIC 396
N+ A G G H +ITF+++ G I +AG GI+ F NIC
Sbjct: 339 DNVKKAIRFTGKYGEHPDEKYDPKALPAIEKITFENVNGDGIGVAGLLEGIEGDVFKNIC 398
Query: 397 LSNISLSINPGSYNS-WECSNIHGSSESVFPE-PCPEL-EXXXXXXXXTCFSL 446
N++L + S S WECSN+ G S+ V PE C L E CF L
Sbjct: 399 FLNVTLRVKKNSKKSPWECSNVRGYSQWVSPEITCDSLKESIFPEHGSDCFGL 451
|
|
| TAIR|locus:2128524 AT4G23820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 990 (353.6 bits), Expect = 9.1e-100, P = 9.1e-100
Identities = 192/409 (46%), Positives = 262/409 (64%)
Query: 24 SDGQCDDQPTLDPRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSG 83
S+ C L R +SIT+FG VGDG+T+NT AF+ AI+ ++ +GG LY+P G
Sbjct: 24 SEATCSGIVPLRYRYDKISITDFGGVGDGRTVNTKAFRAAIYRIQHLKRRGGTLLYIPPG 83
Query: 84 KWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYM 143
+LT SFNLTSH+TL+L KGAVI Q+ +W ++DPLPSYGRG ELPG RY S I+G
Sbjct: 84 VYLTESFNLTSHMTLYLAKGAVIRAVQDTWNWPLIDPLPSYGRGRELPGGRYMSFIHGDG 143
Query: 144 LRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNI 203
LRDVV+TG NGTIDGQG VWW+ + S++L Y+RP+L+EF S+ +++SN+ F N+P +NI
Sbjct: 144 LRDVVITGQNGTIDGQGEVWWNMWRSRTLKYTRPNLIEFKDSKEIIISNVIFQNSPFWNI 203
Query: 204 HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGI 263
HPVYCSNV I ++++ AP +SP T GI PDSS NVCIED I+ G D +++KSGWD+YGI
Sbjct: 204 HPVYCSNVVIHHVTILAPQDSPNTDGIDPDSSYNVCIEDSYISTGDDLVAIKSGWDQYGI 263
Query: 264 AYGRPTTDVHIRRVLLQXXXXXXXXXXXXXXGGISNVQVEKIHLYDSLNGIEFRTTKGRG 323
AYGRP++++ IRR+ GGI N+ E I L + G+ +T GRG
Sbjct: 264 AYGRPSSNITIRRIT-GSSPFAGIAIGSETSGGIKNIIAEHITLSNMGVGVNIKTNIGRG 322
Query: 324 GYIRQIVISDAELYNINVAFGACGNCGSHXXXXXXXXXXXXXXQITFKDIIGTNITIAGN 383
GYI+ I ISD + G+ G H I K++ G N+ AG+
Sbjct: 323 GYIKNIKISDVYVDTAKYGIKIAGDTGDHPDENYNPNALPVVKGIHIKNVWGVNVRNAGS 382
Query: 384 FTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGSSESVFPEPCPEL 432
G++ +PF ICLS I+L + SY +W+CS++ G+S V P PC EL
Sbjct: 383 IQGLKGSPFTGICLSEINLHGSLNSYKTWKCSDVSGTSLKVSPWPCSEL 431
|
|
| TAIR|locus:2082787 AT3G61490 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
Identities = 178/398 (44%), Positives = 253/398 (63%)
Query: 37 RPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHL 96
R HS SITE+G VGDGKTLNT AFQ+A+ +L ++ +GGAQL+VP+GKWLTGSFNLTSH
Sbjct: 41 RSHSASITEYGGVGDGKTLNTKAFQSAVDHLSQYSSEGGAQLFVPAGKWLTGSFNLTSHF 100
Query: 97 TLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTI 156
TLFL K A++L +Q+ + + ++ LPSYGRG + G R+ SLI G L DV++TG+NGTI
Sbjct: 101 TLFLHKDAILLAAQDLNEYPILKALPSYGRGRDAAGGRFASLIFGTNLSDVIITGNNGTI 160
Query: 157 DGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNI 216
DGQGS WW F L Y+RP+L+E + S+ + +SNLTFL++P++NIHPVY SN+ ++ +
Sbjct: 161 DGQGSFWWQKFHGGKLKYTRPYLIELMFSDTIQISNLTFLDSPSWNIHPVYSSNIIVKGV 220
Query: 217 SVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRR 276
++ AP +SP T GI PDS N IEDC I G D I++KSGWDEYGI++G PT + IRR
Sbjct: 221 TIIAPVKSPNTDGINPDSCTNTRIEDCYIISGDDCIAVKSGWDEYGISFGMPTKHLVIRR 280
Query: 277 VLLQXXXXXXXXXXXXXXGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAEL 336
+ GGI +V+ E I Y + +G+ +T GRG +++ I + L
Sbjct: 281 LTCISPYSAAIALGSEMSGGIEDVRAEDITAYQTESGVRIKTAVGRGAFVKNIYVKGMNL 340
Query: 337 YNINVAFGACGNCGSHXXXXXXXXXXXXXXQITFKDIIGTNITIAGNFTGIQEAPFANIC 396
+ + F GN +H I ++DI+ N+++AG GI PF IC
Sbjct: 341 HTMKWVFWMTGNYKAHADSHYDPHALPEITGINYRDIVAENVSMAGRLEGISGDPFTGIC 400
Query: 397 LSNISLSINPGSYNS-WECSNIHGSSESVFPEPCPELE 433
+SN ++S+ + W CS++ G + V P+PC L+
Sbjct: 401 ISNATISMAAKHKKAIWMCSDVEGVTSGVDPKPCDLLD 438
|
|
| TAIR|locus:2119156 AT4G33440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
Identities = 182/400 (45%), Positives = 257/400 (64%)
Query: 35 DPRPHSV--SITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNL 92
DP P+ + SIT+FG VGDGKT NT AF+ A+ +L+ FA +GGAQL VP G WL+GSFNL
Sbjct: 64 DPFPNRIVMSITDFGGVGDGKTSNTAAFRRAVRHLEGFAAEGGAQLNVPEGTWLSGSFNL 123
Query: 93 TSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGD 152
TS+ TLFLE+GA+ILGS++ W +++PLPSYGRG E PG R+ SLI+G L +VV+TG+
Sbjct: 124 TSNFTLFLERGALILGSKDLDEWPIIEPLPSYGRGRERPGGRHISLIHGDNLTNVVITGE 183
Query: 153 NGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVH 212
NGTIDGQG +WW+ + +++L ++R HL+E +S N+++SNLT LN+P + IHPVYCSNV
Sbjct: 184 NGTIDGQGKMWWELWWNRTLVHTRGHLIELKNSHNILISNLTLLNSPFWTIHPVYCSNVV 243
Query: 213 IQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDV 272
I+N+++ AP +P T GI PDSS NVCIEDC I G D +++KSGWD+YG+A RP++++
Sbjct: 244 IRNMTILAPMNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDQYGMAVARPSSNI 303
Query: 273 HIRRVLLQXXXXXXXXXXXXXXGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVIS 332
IRR+ GGI N+ VE IH++DS G+ +T KGRGGYI I +
Sbjct: 304 VIRRISGTTRTCSGVGIGSEMSGGIFNITVEDIHVWDSAAGLRIKTDKGRGGYISNITFN 363
Query: 333 DAELYNINVAFGACGNCGSHXXXXXXXXXXXXXXQITFKDIIGTNITIAGNFTGIQEAPF 392
+ L + V H I +++ N A G++ F
Sbjct: 364 NVLLEKVKVPIRFSSGSNDHSDDKWDPKALPRVKGIYISNVVSLNSRKAPMLLGVEGTSF 423
Query: 393 ANICLSNISLSINPGSYNSWECSNIHGSSESVFPEPCPEL 432
++CL N++L P + W+C ++ G + VFP CP+L
Sbjct: 424 QDVCLRNVTLLGLPKT-EKWKCKDVSGYASDVFPLSCPQL 462
|
|
| TAIR|locus:2101313 AT3G48950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
Identities = 175/398 (43%), Positives = 249/398 (62%)
Query: 34 LDPRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLT 93
L+ R HS +T+FGAVGDGKT NT AF+NAI L A GGAQL VP GKWLTGSFNLT
Sbjct: 38 LNCRKHSAILTDFGAVGDGKTSNTKAFRNAISKLSQMATDGGAQLVVPPGKWLTGSFNLT 97
Query: 94 SHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGR-RYKSLINGYMLRDVVVTGD 152
SH TLF+++GA IL SQ+ S W V+ PLPSYG+G + G R+ SLI+G L DVV+TG+
Sbjct: 98 SHFTLFIQRGATILASQDESEWPVIAPLPSYGKGRDGTGTGRFNSLISGTNLTDVVITGN 157
Query: 153 NGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVH 212
NGTI+GQG WWD F + +RP+L+E + S+N+ +SN+T +++P++NIHPVYC++V
Sbjct: 158 NGTINGQGQYWWDKFKKKQFKITRPYLIEILFSKNIQISNITLIDSPSWNIHPVYCNSVI 217
Query: 213 IQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDV 272
+++++V AP P T GI PDS N IEDC I G D I++KSGWD+YGI +G PT +
Sbjct: 218 VKSVTVLAPVTVPNTDGINPDSCTNTLIEDCYIVSGDDCIAVKSGWDQYGIKFGMPTQQL 277
Query: 273 HIRRVLLQXXXXXXXXXXXXXXGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVIS 332
IRR+ GGI +V++E + L ++ + I +T GRG Y++ I
Sbjct: 278 SIRRLTCISPKSAGVALGSEMSGGIKDVRIEDVTLTNTESAIRIKTAVGRGAYVKDIYAR 337
Query: 333 DAELYNINVAFGACGNCGSHXXXXXXXXXXXXXXQITFKDIIGTNITIAGNFTGIQEAPF 392
+ + F GN GSH I ++D+ N+T++ + GI + PF
Sbjct: 338 RITMKTMKYVFWMSGNYGSHPDEGFDPKALPEITNINYRDMTAENVTMSASLDGIDKDPF 397
Query: 393 ANICLSNISLSINPGSYN-SWECSNIHGSSESVFPEPC 429
IC+SN+++++ + W C+++ G + V PEPC
Sbjct: 398 TGICISNVTIALAAKAKKMQWNCTDVAGVTSRVTPEPC 435
|
|
| TAIR|locus:2117964 AT4G23500 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
Identities = 174/394 (44%), Positives = 245/394 (62%)
Query: 37 RPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHL 96
R +S S+ EFGAVGDG T NT AF++A+ L FAD GG+ L+VP+G+WLTG+FNLTSH
Sbjct: 64 RAYSASLDEFGAVGDGVTSNTAAFRDAVSQLSRFADYGGSLLFVPAGRWLTGNFNLTSHF 123
Query: 97 TLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTI 156
TLFL + AVIL SQ S ++V++PLPSYGRG + G R+ SL+ G L DVV+TG+NGTI
Sbjct: 124 TLFLHRDAVILASQEESDYEVIEPLPSYGRGRDTDGGRFISLLFGSNLTDVVITGENGTI 183
Query: 157 DGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNI 216
DGQG WW F L Y+RP+L+E + S+ + +SNLTFLN+P+++IHPVY SN++IQ +
Sbjct: 184 DGQGEPWWGKFKRGELKYTRPYLIEIMHSDGIQISNLTFLNSPSWHIHPVYSSNIYIQGL 243
Query: 217 SVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRR 276
++ AP P T GI PDS N IEDC I G D I++KSGWD+YGI YG PT + IRR
Sbjct: 244 TILAPVTVPNTDGINPDSCTNTRIEDCYIVSGDDCIAVKSGWDQYGINYGMPTKQLLIRR 303
Query: 277 VLLQXXXXXXXXXXXXXXGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAEL 336
+ GGI +V+ E I +S +GI +T GRGGY++ + + +
Sbjct: 304 LTCISPDSAVIALGSEMSGGIEDVRAEDIVAINSESGIRIKTAIGRGGYVKDVYVRGMTM 363
Query: 337 YNINVAFGACGNCGSHXXXXXXXXXXXXXXQITFKDIIGTNITIAGNFTGIQEAPFANIC 396
+ F G+ GSH I ++D++ N+T+ GI F IC
Sbjct: 364 MTMKYVFWMTGSYGSHPDDHYDPKALPVIQNINYQDMVAENVTMPAQLAGISGDQFTGIC 423
Query: 397 LSNISLSINPGSYNS-WECSNIHGSSESVFPEPC 429
+SN++++++ W C+++ G + V P+PC
Sbjct: 424 ISNVTITLSKKPKKVLWNCTDVSGYTSGVTPQPC 457
|
|
| TAIR|locus:2152980 AT5G41870 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
Identities = 187/408 (45%), Positives = 253/408 (62%)
Query: 28 CDDQPTLDPRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKG-GAQLYVPSGKWL 86
C + R +SI++FGAVGDGKTLNT AF +AI +++ + G LYVP G +L
Sbjct: 32 CSGIVPMKHRNEMLSISDFGAVGDGKTLNTKAFNSAIDRIRNSNNSNEGTLLYVPRGVYL 91
Query: 87 TGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRD 146
T SFNLTSH+TL+L GAVI Q+ W + DPLPSYGRG E PGRRY S I+G L D
Sbjct: 92 TQSFNLTSHMTLYLADGAVIKAVQDTEKWPLTDPLPSYGRGREHPGRRYISFIHGDGLND 151
Query: 147 VVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPV 206
VV+TG NGTIDGQG WW+ + +L ++RP L+EF +S N++VS++ N+P + +HPV
Sbjct: 152 VVITGRNGTIDGQGEPWWNMWRHGTLKFTRPGLIEFNNSTNILVSHVVLQNSPFWTLHPV 211
Query: 207 YCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYG 266
YCSNV + ++++ AP +S T GI PDSS NVCIED I+ G D +++KSGWDEYGIAY
Sbjct: 212 YCSNVVVHHVTILAPTDSYNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYN 271
Query: 267 RPTTDVHIRRVLLQXXXXXXXXXXXXXXGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYI 326
RP+ D+ IRR+ GGI NV VE I LY+S GI +T GRGG I
Sbjct: 272 RPSRDITIRRIT-GSSPFAGIAIGSETSGGIQNVTVENITLYNSGIGIHIKTNIGRGGSI 330
Query: 327 RQIVISDAELYNINVAFGACGNCGSHXXXXXXXXXXXXXXQITFKDIIGTNITIAGNFTG 386
+ I IS L + G+ G H IT K++ G + AG G
Sbjct: 331 QGITISGVYLEKVRTGIKISGDTGDHPDDKFNTSALPIVRGITIKNVWGIKVERAGMVQG 390
Query: 387 IQEAPFANICLSNISLSINPGSYNS--WECSNIHGSSESVFPEPCPEL 432
++++PF N+C SN++L+ G+ S W+CS++ G+++ V P PCPEL
Sbjct: 391 LKDSPFTNLCFSNVTLT---GTKRSPIWKCSDVVGAADKVNPTPCPEL 435
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.2.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 456 | |||
| COG5434 | 542 | COG5434, PGU1, Endopygalactorunase [Cell envelope | 2e-53 | |
| PLN03003 | 456 | PLN03003, PLN03003, Probable polygalacturonase At3 | 3e-29 | |
| PLN02218 | 431 | PLN02218, PLN02218, polygalacturonase ADPG | 5e-25 | |
| pfam00295 | 325 | pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam | 6e-23 | |
| PLN02793 | 443 | PLN02793, PLN02793, Probable polygalacturonase | 2e-17 | |
| PLN02188 | 404 | PLN02188, PLN02188, polygalacturonase/glycoside hy | 5e-16 | |
| PLN03010 | 409 | PLN03010, PLN03010, polygalacturonase | 8e-13 | |
| pfam12708 | 222 | pfam12708, Pectate_lyase_3, Pectate lyase superfam | 2e-12 | |
| PLN02155 | 394 | PLN02155, PLN02155, polygalacturonase | 3e-11 |
| >gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 2e-53
Identities = 109/393 (27%), Positives = 152/393 (38%), Gaps = 50/393 (12%)
Query: 41 VSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFL 100
S+++ GAVGDG T NT A Q AI A GG + +P+G +L+G L S++TL L
Sbjct: 83 FSVSDDGAVGDGATDNTAAIQAAIDAC---ASAGGGTVLLPAGTYLSGPLFLKSNVTLHL 139
Query: 101 EKGAVILGSQNPSHWDVV-----------------DPLPSYGRGIELPGRRYKSLINGYM 143
+GA +L S NP + D G G+ N
Sbjct: 140 AEGATLLASSNPKDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNS-- 197
Query: 144 LRDVVVTGDNGTIDGQ----GSVWWDWFSSQSLNY-----SRPHLVEFISSENVVVSNLT 194
+ GTIDG G W+ RP V NV++ L
Sbjct: 198 -SNRKEIWGKGTIDGNGYKRGDKWFSG-LGAVETRIGGKGVRPRTVVLKGCRNVLLEGLN 255
Query: 195 FLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISL 254
N+P + +HPV C N+ +N+++ A T G P S NV IE C G D I++
Sbjct: 256 IKNSPLWTVHPVDCDNLTFRNLTIDANRFDN-TDGFDPGSCSNVLIEGCRFDTGDDCIAI 314
Query: 255 KSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGI 314
KSG G P+ ++ IR S G V GSEM GG+ N+ VE + ++ G+
Sbjct: 315 KSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLV-LGSEMGGGVQNITVEDCVMDNTDRGL 373
Query: 315 EFRTTKGRGGYIRQIVISD------AELYNINVAFGACGNCGSHPDDDFDPDALPAIDQI 368
+T GRGG +R IV D +IN DF P+ D
Sbjct: 374 RIKTNDGRGGGVRNIVFEDNKMRNVKTKLSINKGQITFSIVDRGGLIDFVLSGSPSKDDK 433
Query: 369 TFKDIIGTNITI---------AGNFTGIQEAPF 392
+ G TG+ E
Sbjct: 434 LTSKEGAQTVGGVVIRNLLATGGGTTGLDERSV 466
|
Length = 542 |
| >gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 3e-29
Identities = 116/426 (27%), Positives = 193/426 (45%), Gaps = 58/426 (13%)
Query: 39 HSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTL 98
+++ +T+FGAVGDG T ++ AF A + + G Q VP+G +T L
Sbjct: 22 NALDVTQFGAVGDGVTDDSQAFLKA--WEAVCSGTGDGQFVVPAG--------MTFMLQP 71
Query: 99 FLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYML----RDVVVTGDNG 154
+G+ P ++ L + +G +K + ++L +V+ GD G
Sbjct: 72 LKFQGSC---KSTPVFVQMLGKLVAPSKG------NWKGDKDQWILFTDIEGLVIEGD-G 121
Query: 155 TIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQ 214
I+GQGS WW+ SRP ++F S N+ +S LT L++P +IH C+ V I
Sbjct: 122 EINGQGSSWWEH------KGSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTIS 175
Query: 215 NISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHI 274
++ ++AP SP T GI +S NV I+DCIIA G D I++ SG T+++HI
Sbjct: 176 SLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG-----------TSNIHI 224
Query: 275 RRVLLQSSSGSSVAFGSEMSGG----ISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIV 330
+ G ++ GS G + NV V+ + ++NG +T +G GY R I
Sbjct: 225 SGI--DCGPGHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMIT 282
Query: 331 ISDAELYNIN--VAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAG-NFTGI 387
+ L N+ + N G + + + ++ F + IGT+ + G +F
Sbjct: 283 FNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCS 342
Query: 388 QEAPFANICLSNISL---SINPGSYNSWECSNIHGSSESVFP-----EPCPELENSSSNS 439
+ P I L ++ + S G +C N+ G+S P E ++ +S+
Sbjct: 343 ERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECLELSTDMFSSAQLL 402
Query: 440 SSTCFS 445
TC S
Sbjct: 403 EQTCMS 408
|
Length = 456 |
| >gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 5e-25
Identities = 103/388 (26%), Positives = 167/388 (43%), Gaps = 67/388 (17%)
Query: 38 PHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGK-WLTGSFNLTSHL 96
P +VS+++FGA GDGKT +T AF NA + K+ + G L VP G +L S LT
Sbjct: 65 PTTVSVSDFGAKGDGKTDDTQAFVNA--WKKACSSNGAVNLLVPKGNTYLLKSIQLTGPC 122
Query: 97 TLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDV----VVTGD 152
I G+ + S YK + M V V G
Sbjct: 123 KSIRT--VQIFGTLSASQ----------------KRSDYKDISKWIMFDGVNNLSVDGGS 164
Query: 153 NGTIDGQGSVWWDWFSSQSLNYSRP-----HLVEFISSENVVVSNLTFLNAPAYNIHPVY 207
G +DG G WW +S N ++P + F +S++++V NL NA I
Sbjct: 165 TGVVDGNGETWWQ--NSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQIQISIEK 222
Query: 208 CSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGR 267
CSNV + N+ V AP +SP T GI ++ N+ + + II G D IS++SG
Sbjct: 223 CSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESG---------- 272
Query: 268 PTTDVHIRRVLLQSSSGSSV-AFGSEMSGG-ISNVQVEKIHLYDSLNGIEFRTTKGRGGY 325
+ +V I + G S+ + G + S +S V V+ L + NG+ +T +G G
Sbjct: 273 -SQNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGT 331
Query: 326 IRQIVISDAELYNINVAFGACGNCGSHP---DDDF-------DPDALPAIDQITFKDIIG 375
I+ + ++ N+ +P D D+ + + + +++I G
Sbjct: 332 ASNIIFQNIQMENVK-----------NPIIIDQDYCDKSKCTSQQSAVQVKNVVYRNISG 380
Query: 376 TNIT-IAGNFTGIQEAPFANICLSNISL 402
T+ + +A F + P I L N+++
Sbjct: 381 TSASDVAITFNCSKNYPCQGIVLDNVNI 408
|
Length = 431 |
| >gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 6e-23
Identities = 69/289 (23%), Positives = 116/289 (40%), Gaps = 43/289 (14%)
Query: 146 DVVVTGDNGTIDGQGSVWWDWFSSQSL-NYSRPHLVEFISSENVVVSNLTFLNAPAYNIH 204
+ GTIDGQG WWD +S +P + F +N ++ L N+P ++
Sbjct: 59 TNLGASGGGTIDGQGPAWWDGSCKKSNGCKKKPKFLRFHKLDNSTITGLNIKNSPVFHFS 118
Query: 205 PVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIA 264
C N+ +I++ AP SP T GI SS V I + I G D I++ SG
Sbjct: 119 VEDCKNLTASDITIDAPAGSPNTDGIDIGSSSGVTISNTTIGTGDDCIAIGSG------- 171
Query: 265 YGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGG----ISNVQVEKIHLYDSLNGIEFRTTK 320
+ ++ I + G ++ GS +S V V+ + S NG+ +T
Sbjct: 172 ----SGNILITNI--TCGGGHGISIGSVGGRSDENTVSGVTVKNCTVTGSDNGVRIKTWP 225
Query: 321 GRGGYIRQIVISDAELYNINVAFGACGNCGSHPDD------DFDPDALP----AIDQITF 370
G G + I + E+ N+ ++P D P P I ITF
Sbjct: 226 GATGTVSGITFENIEMSNV-----------AYPIVIDQDYCDGKPCGKPTSGVKISDITF 274
Query: 371 KDIIGTNIT-IAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIH 418
K+I GT+ + A + +P + ++ ++ + C+N+
Sbjct: 275 KNITGTSASATAVKLLCSKGSPCSGWTWEDVDITGGK---TTSSCNNVP 320
|
Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. Length = 325 |
| >gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase | Back alignment and domain information |
|---|
Score = 83.8 bits (207), Expect = 2e-17
Identities = 111/453 (24%), Positives = 191/453 (42%), Gaps = 74/453 (16%)
Query: 7 LLLLLALCSAILINGEVSDG--QCDDQPTLDPRPHS---VSITEFGAVGDGKTLNTLAFQ 61
LLL++A A + N + Q + + RP S + + +FGA GDG T +T AF+
Sbjct: 14 LLLVVASSLAFVCNQGSFESLLQLPQRQSARTRPRSERVLHVGDFGAKGDGVTDDTQAFK 73
Query: 62 NAIFYLKSFADKGGAQLYVPSG-KWLTGSFNLT----SHLTLFLEKGAVILGSQNPSHWD 116
A S K ++ +P+G +L +L + LTL + I+ ++P W
Sbjct: 74 EAWKMACSS--KVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQIS--GTIIAPKDPDVWK 129
Query: 117 VVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSR 176
++P + + + + + V G GT++G G WW S +N++
Sbjct: 130 GLNP---------------RKWLYFHGVNHLTVEG-GGTVNGMGHEWWA--QSCKINHTN 171
Query: 177 P-----HLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIV 231
P + F +++ V NL +++ +I C V I + V AP SP T GI
Sbjct: 172 PCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIH 231
Query: 232 PDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSV-AFG 290
+S V I+D I+ G D IS+ ++ + IR + G S+ + G
Sbjct: 232 ISASRGVVIKDSIVRTGDDCISIVGN-----------SSRIKIRNIACGPGHGISIGSLG 280
Query: 291 -SEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVAFGACGNC 349
S + ++ V+ L ++ NG+ +T +G G +I + + N+
Sbjct: 281 KSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENV---------- 330
Query: 350 GSHP--DDDFDPDAL-PAIDQ--------ITFKDIIGTNITI-AGNFTGIQEAPFANICL 397
S+P D + D+ P +Q I+F I GT+ T A F +P + L
Sbjct: 331 -SNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYL 389
Query: 398 SNISLSINPGSYNSWECSNIHGSSE-SVFPEPC 429
++ L + G + C +GSS V+P PC
Sbjct: 390 EDVQLLSSTGDFTESFCWEAYGSSSGQVYPPPC 422
|
Length = 443 |
| >gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 5e-16
Identities = 108/454 (23%), Positives = 167/454 (36%), Gaps = 78/454 (17%)
Query: 5 VALLLLLALCSAILINGEVSDGQCDDQPTLDPRPHSVSITEFGAVGDGKTLNTLAFQNAI 64
+ LLL L ++N V + FGA +G T ++ AF A
Sbjct: 1 MEFRLLLLLVVVFIVNALVLSSAGGGSVVKGSSTFLFDVRSFGARANGHTDDSKAFMAA- 59
Query: 65 FYLKSFADKGGAQLYVPSGKWLTGSFNL------TSHLTLFLEKGAVILGSQNPSHWDVV 118
+ + A G L +P G + G S LT L+
Sbjct: 60 -WKAACASTGAVTLLIPPGTYYIGPVQFHGPCTNVSSLTFTLKAAT-------------- 104
Query: 119 DPLPSYGRG---IELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYS 175
L YG G IE G++ + G GT DGQG+ W +
Sbjct: 105 -DLSRYGSGNDWIEF----------GWVNGLTLTGG--GTFDGQGAAAWPFNKCPIRKDC 151
Query: 176 R--PHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPD 233
+ P V+F++ N VV +T +N+ ++I V C N + + AP +SP T GI +
Sbjct: 152 KLLPTSVKFVNMNNTVVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIE 211
Query: 234 SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGS-- 291
S V I D I G D IS+ G + V I R+ G SV GS
Sbjct: 212 RSSGVYISDSRIGTGDDCISIGQGNSQ-----------VTITRIRCGPGHGISV--GSLG 258
Query: 292 --EMSGGISNVQVEKIHLYDSLNGIEFRT-----TKGRGGYI--RQIVISDAELYN---I 339
G ++ + V + NGI +T K + IV+++ N I
Sbjct: 259 RYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVT--NPIII 316
Query: 340 NVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT-IAGNFTGIQEAPFANICLS 398
+ + +C S P + + I FK+I GT+ + +A + P + L
Sbjct: 317 DQKYCPFYSCESK-----YPSGV-TLSDIYFKNIRGTSSSQVAVLLKCSRGVPCQGVYLQ 370
Query: 399 NISLSINPGS-YNSWECSNIHGS-SESVFPEPCP 430
++ L ++ G S C N+ + P PCP
Sbjct: 371 DVHLDLSSGEGGTSSSCENVRAKYIGTQIPPPCP 404
|
Length = 404 |
| >gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase | Back alignment and domain information |
|---|
Score = 69.6 bits (170), Expect = 8e-13
Identities = 92/394 (23%), Positives = 164/394 (41%), Gaps = 62/394 (15%)
Query: 42 SITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKW-------LTGSFNLTS 94
++ +FGA GDG+T ++ AF A + + L +PSGK G TS
Sbjct: 48 NVLKFGAKGDGQTDDSNAFLQA-WNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTS 106
Query: 95 HLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNG 154
+ ++ +I+ N W +P + + I+ + +++ G +G
Sbjct: 107 ---IKVQLDGIIVAPSNIVAWS--NP-------------KSQMWISFSTVSGLMIDG-SG 147
Query: 155 TIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQ 214
TIDG+GS +W ++L+ S+ +N+ ++ +T +++P +I C+ V I
Sbjct: 148 TIDGRGSSFW-----EALHISK--------CDNLTINGITSIDSPKNHISIKTCNYVAIS 194
Query: 215 NISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHI 274
I++ AP SP T GI S N+ I D I G D I++ SG +++++I
Sbjct: 195 KINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSG-----------SSNINI 243
Query: 275 RRVLLQSSSGSSVAFGSEMSGG----ISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIV 330
++ G ++ GS + G +S+V V + NG +T +G GY R I
Sbjct: 244 TQI--NCGPGHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNIS 301
Query: 331 ISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNI---TIAGNFTGI 387
+ L N D D+ AI + + GT I + I
Sbjct: 302 FENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSNENAITLKCSAI 361
Query: 388 QEAPFANICLSNISLSINPGSYNSWECSNIHGSS 421
++ + +I +++ G EC N+ G S
Sbjct: 362 THC--KDVVMDDIDVTMENGEKPKVECQNVEGES 393
|
Length = 409 |
| >gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 2e-12
Identities = 50/225 (22%), Positives = 80/225 (35%), Gaps = 24/225 (10%)
Query: 40 SVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLF 99
++ +FGA GDG T +T A Q AI + A GGA +Y P G +L S +
Sbjct: 1 FRNVKDFGAKGDGVTDDTAAIQKAI---CASATTGGAVVYFPPGTYLVSS-------PII 50
Query: 100 LEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYM-LRDVVVTGDNGTIDG 158
L G ++G + + V+ + + + G + Y +R+ V+ G + D
Sbjct: 51 LYSGTTLVG--DGKNPPVLKLSDAAPSFVIVGGNAVIDAGDPYRQIRNFVIDGTGVSPDR 108
Query: 159 QGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISV 218
GS W +Q+ +E + N + + F A I + I N S
Sbjct: 109 TGSGIH-WQVAQA------TSIENVEIINPGLHGIDFNMGTANTIPGNNHQGIFIDNGSG 161
Query: 219 HAPPESPYTVG---IVPDSSDNVCIEDCIIA-MGHDAISLKSGWD 259
E G S I + I + GW
Sbjct: 162 GVMVEDLVFNGGDDGATFGSQQFTIRNLTFNNACSTGIGIDWGWG 206
|
This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28. Length = 222 |
| >gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 3e-11
Identities = 69/284 (24%), Positives = 118/284 (41%), Gaps = 22/284 (7%)
Query: 154 GTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHI 213
GT D + + +W S + F S+++V++S + +N+ ++ C+NV +
Sbjct: 122 GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVVV 181
Query: 214 QNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVH 273
+N+ + AP SP T G S V + G D +++ G T +
Sbjct: 182 RNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPG-----------TRNFL 230
Query: 274 IRRVLLQSSSGSSVAFGSEM----SGGISNVQVEKIHLYDSLNGIEFRT-TKGRGGYIRQ 328
I + L G V+ GS G+ NV V S NG+ ++ + G++R
Sbjct: 231 ITK--LACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRN 288
Query: 329 IVISDAELYNINVAFGACGN-CGSHPDDDFDPDALPAIDQITFKDIIGTNITI-AGNFTG 386
+ D + N+ N C +H + + I Q+T+K+I GT+ T A
Sbjct: 289 VFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGV-KISQVTYKNIQGTSATQEAMKLVC 347
Query: 387 IQEAPFANICLSNISLSINPGSYNSWECSNIHGSSESVF-PEPC 429
+ +P I L +I L+ N G+ + C N G S V P C
Sbjct: 348 SKSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVIQPTSC 391
|
Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 456 | |||
| PLN02793 | 443 | Probable polygalacturonase | 100.0 | |
| PLN02155 | 394 | polygalacturonase | 100.0 | |
| PLN02218 | 431 | polygalacturonase ADPG | 100.0 | |
| PLN02188 | 404 | polygalacturonase/glycoside hydrolase family prote | 100.0 | |
| PLN03003 | 456 | Probable polygalacturonase At3g15720 | 100.0 | |
| PLN03010 | 409 | polygalacturonase | 100.0 | |
| PF00295 | 326 | Glyco_hydro_28: Glycosyl hydrolases family 28; Int | 100.0 | |
| COG5434 | 542 | PGU1 Endopygalactorunase [Cell envelope biogenesis | 100.0 | |
| TIGR03808 | 455 | RR_plus_rpt_1 twin-arg-translocated uncharacterize | 99.95 | |
| PF12708 | 225 | Pectate_lyase_3: Pectate lyase superfamily protein | 99.89 | |
| PLN03003 | 456 | Probable polygalacturonase At3g15720 | 99.85 | |
| PLN02218 | 431 | polygalacturonase ADPG | 99.85 | |
| PLN02793 | 443 | Probable polygalacturonase | 99.84 | |
| PLN03010 | 409 | polygalacturonase | 99.84 | |
| PLN02155 | 394 | polygalacturonase | 99.84 | |
| PF00295 | 326 | Glyco_hydro_28: Glycosyl hydrolases family 28; Int | 99.82 | |
| PF03718 | 582 | Glyco_hydro_49: Glycosyl hydrolase family 49; Inte | 99.82 | |
| PLN02188 | 404 | polygalacturonase/glycoside hydrolase family prote | 99.8 | |
| TIGR03805 | 314 | beta_helix_1 parallel beta-helix repeat-containing | 99.67 | |
| COG5434 | 542 | PGU1 Endopygalactorunase [Cell envelope biogenesis | 99.44 | |
| PF13229 | 158 | Beta_helix: Right handed beta helix region; PDB: 2 | 98.85 | |
| TIGR03808 | 455 | RR_plus_rpt_1 twin-arg-translocated uncharacterize | 98.83 | |
| TIGR03805 | 314 | beta_helix_1 parallel beta-helix repeat-containing | 98.82 | |
| PF12541 | 277 | DUF3737: Protein of unknown function (DUF3737) ; I | 98.78 | |
| PF12541 | 277 | DUF3737: Protein of unknown function (DUF3737) ; I | 98.65 | |
| PF13229 | 158 | Beta_helix: Right handed beta helix region; PDB: 2 | 98.54 | |
| PF07602 | 246 | DUF1565: Protein of unknown function (DUF1565); In | 98.49 | |
| COG3420 | 408 | NosD Nitrous oxidase accessory protein [Inorganic | 98.47 | |
| PF05048 | 236 | NosD: Periplasmic copper-binding protein (NosD); I | 98.44 | |
| PRK10123 | 464 | wcaM putative colanic acid biosynthesis protein; P | 98.42 | |
| PLN02480 | 343 | Probable pectinesterase | 98.41 | |
| PF05048 | 236 | NosD: Periplasmic copper-binding protein (NosD); I | 98.4 | |
| PF03718 | 582 | Glyco_hydro_49: Glycosyl hydrolase family 49; Inte | 98.39 | |
| smart00656 | 190 | Amb_all Amb_all domain. | 98.26 | |
| COG3866 | 345 | PelB Pectate lyase [Carbohydrate transport and met | 98.24 | |
| COG3866 | 345 | PelB Pectate lyase [Carbohydrate transport and met | 98.19 | |
| PF14592 | 425 | Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF | 98.15 | |
| smart00656 | 190 | Amb_all Amb_all domain. | 97.96 | |
| PLN02682 | 369 | pectinesterase family protein | 97.92 | |
| PF12708 | 225 | Pectate_lyase_3: Pectate lyase superfamily protein | 97.91 | |
| PF00544 | 200 | Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe | 97.84 | |
| PLN02773 | 317 | pectinesterase | 97.83 | |
| PLN02176 | 340 | putative pectinesterase | 97.78 | |
| PLN02497 | 331 | probable pectinesterase | 97.78 | |
| PLN02304 | 379 | probable pectinesterase | 97.69 | |
| PRK10531 | 422 | acyl-CoA thioesterase; Provisional | 97.6 | |
| PLN02634 | 359 | probable pectinesterase | 97.59 | |
| PLN02665 | 366 | pectinesterase family protein | 97.59 | |
| PLN02432 | 293 | putative pectinesterase | 97.48 | |
| PLN02170 | 529 | probable pectinesterase/pectinesterase inhibitor | 97.41 | |
| PLN02671 | 359 | pectinesterase | 97.35 | |
| PF01095 | 298 | Pectinesterase: Pectinesterase; InterPro: IPR00007 | 97.26 | |
| PLN02201 | 520 | probable pectinesterase/pectinesterase inhibitor | 97.1 | |
| PLN02933 | 530 | Probable pectinesterase/pectinesterase inhibitor | 97.06 | |
| PF00544 | 200 | Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe | 97.05 | |
| PLN02708 | 553 | Probable pectinesterase/pectinesterase inhibitor | 97.04 | |
| PLN02484 | 587 | probable pectinesterase/pectinesterase inhibitor | 97.04 | |
| PLN02916 | 502 | pectinesterase family protein | 97.01 | |
| PLN02506 | 537 | putative pectinesterase/pectinesterase inhibitor | 97.01 | |
| COG3420 | 408 | NosD Nitrous oxidase accessory protein [Inorganic | 96.98 | |
| PLN02713 | 566 | Probable pectinesterase/pectinesterase inhibitor | 96.97 | |
| PF12218 | 67 | End_N_terminal: N terminal extension of bacterioph | 96.96 | |
| PLN03043 | 538 | Probable pectinesterase/pectinesterase inhibitor; | 96.94 | |
| PLN02468 | 565 | putative pectinesterase/pectinesterase inhibitor | 96.93 | |
| PLN02217 | 670 | probable pectinesterase/pectinesterase inhibitor | 96.93 | |
| PLN02995 | 539 | Probable pectinesterase/pectinesterase inhibitor | 96.91 | |
| PF01696 | 386 | Adeno_E1B_55K: Adenovirus EB1 55K protein / large | 96.89 | |
| PLN02416 | 541 | probable pectinesterase/pectinesterase inhibitor | 96.77 | |
| PLN02745 | 596 | Putative pectinesterase/pectinesterase inhibitor | 96.77 | |
| PLN02314 | 586 | pectinesterase | 96.77 | |
| PLN02197 | 588 | pectinesterase | 96.72 | |
| PLN02301 | 548 | pectinesterase/pectinesterase inhibitor | 96.59 | |
| PLN02488 | 509 | probable pectinesterase/pectinesterase inhibitor | 96.54 | |
| PLN02990 | 572 | Probable pectinesterase/pectinesterase inhibitor | 96.53 | |
| PLN02313 | 587 | Pectinesterase/pectinesterase inhibitor | 96.3 | |
| PF07602 | 246 | DUF1565: Protein of unknown function (DUF1565); In | 94.63 | |
| COG4677 | 405 | PemB Pectin methylesterase [Carbohydrate transport | 94.38 | |
| TIGR03804 | 44 | para_beta_helix parallel beta-helix repeat (two co | 92.8 | |
| PF03211 | 215 | Pectate_lyase: Pectate lyase; InterPro: IPR004898 | 92.56 | |
| TIGR03804 | 44 | para_beta_helix parallel beta-helix repeat (two co | 91.39 | |
| PLN02480 | 343 | Probable pectinesterase | 90.71 | |
| PLN02773 | 317 | pectinesterase | 90.41 | |
| PF09251 | 549 | PhageP22-tail: Salmonella phage P22 tail-spike; In | 90.06 | |
| PRK10123 | 464 | wcaM putative colanic acid biosynthesis protein; P | 88.81 | |
| PF14592 | 425 | Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF | 88.13 | |
| PLN02682 | 369 | pectinesterase family protein | 87.87 | |
| PLN02698 | 497 | Probable pectinesterase/pectinesterase inhibitor | 86.94 | |
| PF01696 | 386 | Adeno_E1B_55K: Adenovirus EB1 55K protein / large | 85.32 | |
| PF08480 | 198 | Disaggr_assoc: Disaggregatase related; InterPro: I | 84.34 | |
| PF08480 | 198 | Disaggr_assoc: Disaggregatase related; InterPro: I | 83.99 | |
| PF03211 | 215 | Pectate_lyase: Pectate lyase; InterPro: IPR004898 | 83.6 | |
| PLN02665 | 366 | pectinesterase family protein | 82.99 |
| >PLN02793 Probable polygalacturonase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-76 Score=598.27 Aligned_cols=363 Identities=25% Similarity=0.421 Sum_probs=321.9
Q ss_pred CCceEEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCC-ceeeeeeEe----ccceEEEeccCcEEEecCC
Q 012788 37 RPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSG-KWLTGSFNL----TSHLTLFLEKGAVILGSQN 111 (456)
Q Consensus 37 ~~~~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G-~Yl~g~l~L----~s~~tL~l~~ga~i~~~~~ 111 (456)
.+.++||+||||+|||++|||+|||+||++|| ++.+|++|+||+| +|++++|.| ||+++|+++ |+|+++.+
T Consensus 49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC--~~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~--g~l~~~~d 124 (443)
T PLN02793 49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMAC--SSKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQIS--GTIIAPKD 124 (443)
T ss_pred CceEEEhhhcccCCCCCCccHHHHHHHHHHHh--ccCCCCEEEECCCceEEEEEEEECCccCCCeEEEEE--EEEEccCC
Confidence 45799999999999999999999999999643 4678999999999 599999999 899999997 89999999
Q ss_pred CCCCCcCCCCCCCCcccccCCCcceeeEEEeeeeeEEEeccCceeeCCCccccccccc---CCCCCCCCeeEEEEeeccE
Q 012788 112 PSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSS---QSLNYSRPHLVEFISSENV 188 (456)
Q Consensus 112 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~---~~~~~~rp~~i~~~~~~nv 188 (456)
+.+|+.. ..+.||++.+.+|++|+|. |+|||+|+.||+.... ......||++|+|.+|+|+
T Consensus 125 ~~~w~~~---------------~~~~~i~~~~~~ni~ItG~-G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv 188 (443)
T PLN02793 125 PDVWKGL---------------NPRKWLYFHGVNHLTVEGG-GTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDL 188 (443)
T ss_pred hHHccCC---------------CCceEEEEecCceEEEEec-eEEECCCcccccccccccCCCCccCCceEEEEEeeccE
Confidence 9888632 1246899999999999997 9999999999975321 1122358999999999999
Q ss_pred EEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCC
Q 012788 189 VVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRP 268 (456)
Q Consensus 189 ~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~ 268 (456)
+|++++++|+|+|++++..|++|+|++++|.++..++|+||||+.+|+||+|+||+|.++||||++|++
T Consensus 189 ~v~gitl~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~----------- 257 (443)
T PLN02793 189 RVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGN----------- 257 (443)
T ss_pred EEECeEEEcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCC-----------
Confidence 999999999999999999999999999999999889999999999999999999999999999999986
Q ss_pred cccEEEEEEEEecCCCCeeEecccc----cCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCcceeEE
Q 012788 269 TTDVHIRRVLLQSSSGSSVAFGSEM----SGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVAFG 344 (456)
Q Consensus 269 s~ni~I~n~~~~~~~~~gi~igs~~----~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~~i~ 344 (456)
++||+|+||+|.. +|||+|||++ .+.|+||+|+||+|.++.+|+|||+|++++|.|+||+|+||+|+++.+||.
T Consensus 258 s~nI~I~n~~c~~--GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~ 335 (443)
T PLN02793 258 SSRIKIRNIACGP--GHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPII 335 (443)
T ss_pred cCCEEEEEeEEeC--CccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEE
Confidence 8999999999974 7999999973 467999999999999999999999999989999999999999999999999
Q ss_pred EeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccc-eeEEEEeeCCCCeeeEEEEeEEEEeCCCCCCcceeeeeeecccc
Q 012788 345 ACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT-IAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGSSES 423 (456)
Q Consensus 345 i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~-~~~~~~g~~~~~~~~I~~~nv~i~~~~~~~~~~~c~~v~g~~~~ 423 (456)
|+++|++......++...+.|+||+|+||+++... .++.+.|+++.||+||+|+||+|+...++...+.|+|++|....
T Consensus 336 I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~~~~~~C~n~~g~~~~ 415 (443)
T PLN02793 336 IDQYYCDSRKPCANQTSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGDFTESFCWEAYGSSSG 415 (443)
T ss_pred EEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecCCCCCCcEEEccEEeECC
Confidence 99999763322222333468999999999999864 57889999999999999999999987665557999999999876
Q ss_pred -ccCCCCCCc
Q 012788 424 -VFPEPCPEL 432 (456)
Q Consensus 424 -~~p~~c~~~ 432 (456)
+.|+||++.
T Consensus 416 ~~~p~~C~~~ 425 (443)
T PLN02793 416 QVYPPPCFSD 425 (443)
T ss_pred eEcCCccccC
Confidence 778899864
|
|
| >PLN02155 polygalacturonase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-75 Score=582.42 Aligned_cols=360 Identities=24% Similarity=0.341 Sum_probs=316.4
Q ss_pred CCCceEEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCCceeeeeeEe----ccceEEEeccCcEEEecCC
Q 012788 36 PRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNL----TSHLTLFLEKGAVILGSQN 111 (456)
Q Consensus 36 ~~~~~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~l~L----~s~~tL~l~~ga~i~~~~~ 111 (456)
..+.++||++|||+|||++|||+|||+||++|| +++||++|+||+|+|++++|.| ||+++|+|+ ++|+++.+
T Consensus 23 ~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC--~~~gGg~v~vP~G~yl~g~i~l~gpcksnv~l~l~--G~l~~~~d 98 (394)
T PLN02155 23 SASNVFNVVSFGAKPDGVTDSTAAFLKAWQGAC--GSASSATVVVPTGTFLLKVITFGGPCKSKITFQVA--GTVVAPED 98 (394)
T ss_pred cCCcEEEhhhcCcCCCCccccHHHHHHHHHHHc--ccCCCeEEEECCCcEEEEEEEEcccCCCCceEEEe--eEEECccc
Confidence 345789999999999999999999999997443 5678999999999999999999 899999997 57888776
Q ss_pred CCCCCcCCCCCCCCcccccCCCcceeeEEEeeeeeEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEE
Q 012788 112 PSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVS 191 (456)
Q Consensus 112 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~ 191 (456)
+..|.. ...|+.+.+++++.|+| |+|||+|+.||...........+|++++|.+|+|++|+
T Consensus 99 ~~~~~~-----------------~~~wi~~~~~~~i~i~G--G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~ 159 (394)
T PLN02155 99 YRTFGN-----------------SGYWILFNKVNRFSLVG--GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIIS 159 (394)
T ss_pred cccccc-----------------cceeEEEECcCCCEEEc--cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEE
Confidence 655531 02378889999999999 99999999999864433333457889999999999999
Q ss_pred eEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCccc
Q 012788 192 NLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTD 271 (456)
Q Consensus 192 ~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~n 271 (456)
+++++|||.|++++..|++|+|++++|.++.+++|+||||+.+|+||+|+||+|.+|||||++|++ ++|
T Consensus 160 gitl~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~g-----------s~n 228 (394)
T PLN02155 160 GVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPG-----------TRN 228 (394)
T ss_pred CeEEEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCC-----------Cce
Confidence 999999999999999999999999999999889999999999999999999999999999999997 899
Q ss_pred EEEEEEEEecCCCCeeEeccc----ccCcEEeEEEEeEEEECCcceEEEEecCC-CCceEEeEEEEceEecCcceeEEEe
Q 012788 272 VHIRRVLLQSSSGSSVAFGSE----MSGGISNVQVEKIHLYDSLNGIEFRTTKG-RGGYIRQIVISDAELYNINVAFGAC 346 (456)
Q Consensus 272 i~I~n~~~~~~~~~gi~igs~----~~~~v~nI~v~n~~~~~~~~gi~iks~~g-~~g~v~nI~~~ni~~~~~~~~i~i~ 346 (456)
|+|+||+|.. +|||+|||+ ..++|+||+|+||+|.++.+|+|||||.+ ++|+|+||+|+||+|+++++||.|+
T Consensus 229 I~I~n~~c~~--GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~ 306 (394)
T PLN02155 229 FLITKLACGP--GHGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIID 306 (394)
T ss_pred EEEEEEEEEC--CceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEE
Confidence 9999999984 799999997 36789999999999999999999999965 6899999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccc-eeEEEEeeCCCCeeeEEEEeEEEEeCCCCCCcceeeeeeeccccc-
Q 012788 347 GNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT-IAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGSSESV- 424 (456)
Q Consensus 347 ~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~-~~~~~~g~~~~~~~~I~~~nv~i~~~~~~~~~~~c~~v~g~~~~~- 424 (456)
+.|++.......+...+.|+||+|+||+++... .++.|.|+++.||+||+|+||+++..++.+..+.|+|++|....+
T Consensus 307 q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~~~~~~C~n~~G~~~~~~ 386 (394)
T PLN02155 307 QNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVI 386 (394)
T ss_pred ecccCCCCCCcCCCCCeEEEEEEEEeeEEEecCCceEEEEeCCCCCEEEEEEEeeEEEecCCCccCcEEeccEeEEcccC
Confidence 999864322212223368999999999999874 577899999999999999999999887666689999999998876
Q ss_pred cCCCCCC
Q 012788 425 FPEPCPE 431 (456)
Q Consensus 425 ~p~~c~~ 431 (456)
.|++|.+
T Consensus 387 ~p~~c~~ 393 (394)
T PLN02155 387 QPTSCLN 393 (394)
T ss_pred CcccccC
Confidence 6778975
|
|
| >PLN02218 polygalacturonase ADPG | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-74 Score=579.81 Aligned_cols=355 Identities=28% Similarity=0.443 Sum_probs=315.2
Q ss_pred CCCceEEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCC-ceeeeeeEec----cceEEEeccCcEEEecC
Q 012788 36 PRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSG-KWLTGSFNLT----SHLTLFLEKGAVILGSQ 110 (456)
Q Consensus 36 ~~~~~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G-~Yl~g~l~L~----s~~tL~l~~ga~i~~~~ 110 (456)
+++.++||+||||+|||++|||+|||+||++|| ++.|+++|+||+| +|++++|.|+ ++++|++ +|+|+++.
T Consensus 63 ~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aC--s~~Ggg~v~vP~G~tyl~~~i~l~gp~ks~~~l~l--~g~L~~s~ 138 (431)
T PLN02218 63 RTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKAC--SSNGAVNLLVPKGNTYLLKSIQLTGPCKSIRTVQI--FGTLSASQ 138 (431)
T ss_pred CCCcEEEeeecccCCCCCcccHHHHHHHHHHhh--hcCCCcEEEECCCCeEEEeeeEecCccCCceEEEE--EEEEEeCC
Confidence 567899999999999999999999999997543 4578889999999 6999999995 6778877 59999999
Q ss_pred CCCCCCcCCCCCCCCcccccCCCcceeeEEEeeeeeEEEecc-CceeeCCCcccccccccCC---CCCCCCeeEEEEeec
Q 012788 111 NPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGD-NGTIDGQGSVWWDWFSSQS---LNYSRPHLVEFISSE 186 (456)
Q Consensus 111 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~-~GtidG~g~~ww~~~~~~~---~~~~rp~~i~~~~~~ 186 (456)
+.++|+. +..||.+.+++||+|+|. +|+|||+|+.||....... ....||+++.|.+|+
T Consensus 139 d~~~y~~-----------------~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~ 201 (431)
T PLN02218 139 KRSDYKD-----------------ISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSK 201 (431)
T ss_pred Chhhccc-----------------cccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccc
Confidence 9988853 124788899999999994 3999999999997643211 124699999999999
Q ss_pred cEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccC
Q 012788 187 NVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYG 266 (456)
Q Consensus 187 nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~ 266 (456)
|++|+|++++|+|+|++++..|+||+|+|++|.++.+++|+||||+.+|+||+|+||+|.+|||||++|+|
T Consensus 202 nv~I~gitl~nSp~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksg--------- 272 (431)
T PLN02218 202 SLIVKNLRVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESG--------- 272 (431)
T ss_pred cEEEeCeEEEcCCCEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCC---------
Confidence 99999999999999999999999999999999999889999999999999999999999999999999997
Q ss_pred CCcccEEEEEEEEecCCCCeeEeccccc----CcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCccee
Q 012788 267 RPTTDVHIRRVLLQSSSGSSVAFGSEMS----GGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVA 342 (456)
Q Consensus 267 ~~s~ni~I~n~~~~~~~~~gi~igs~~~----~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~~ 342 (456)
++||+|+||+|. + +|||+|||++. +.|+||+|+||+|.++.+|+|||||+|++|+|+||+|+||+|+++++|
T Consensus 273 --s~nI~I~n~~c~-~-GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~p 348 (431)
T PLN02218 273 --SQNVQINDITCG-P-GHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNP 348 (431)
T ss_pred --CceEEEEeEEEE-C-CCCEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCCCCeEEEEEEEEeEEEEccccc
Confidence 899999999997 4 89999999973 579999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccc-eeEEEEeeCCCCeeeEEEEeEEEEeCCCCCCcceeeeeeecc
Q 012788 343 FGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT-IAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGSS 421 (456)
Q Consensus 343 i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~-~~~~~~g~~~~~~~~I~~~nv~i~~~~~~~~~~~c~~v~g~~ 421 (456)
|.|++.|+++..+...++. +.|+||+|+||+++... .++.+.|+++.||+||+|+||+++.. ...|+|+++..
T Consensus 349 I~Idq~Y~~~~~~~~~~s~-v~I~nI~~~NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~-----~~~c~n~~~~~ 422 (431)
T PLN02218 349 IIIDQDYCDKSKCTSQQSA-VQVKNVVYRNISGTSASDVAITFNCSKNYPCQGIVLDNVNIKGG-----KATCTNANVVD 422 (431)
T ss_pred EEEEeeccCCCCCCCCCCC-eEEEEEEEEeEEEEecCCcEEEEEECCCCCEeeEEEEeEEEECC-----eeeEEEeeEEE
Confidence 9999999875544333444 69999999999999764 57889999999999999999999852 46799999999
Q ss_pred ccccCCCCC
Q 012788 422 ESVFPEPCP 430 (456)
Q Consensus 422 ~~~~p~~c~ 430 (456)
..+.|+.|.
T Consensus 423 ~~~~~p~c~ 431 (431)
T PLN02218 423 KGAVSPQCN 431 (431)
T ss_pred cccCCCCCC
Confidence 887776884
|
|
| >PLN02188 polygalacturonase/glycoside hydrolase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-74 Score=576.54 Aligned_cols=357 Identities=25% Similarity=0.391 Sum_probs=311.4
Q ss_pred CCCCceEEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCCceeeeeeEec------cceEEEeccCcEEEe
Q 012788 35 DPRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLT------SHLTLFLEKGAVILG 108 (456)
Q Consensus 35 ~~~~~~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~l~L~------s~~tL~l~~ga~i~~ 108 (456)
-.++.++||+||||+|||++|||+|||+||++|| ++.||++|+||+|+|++++|.|+ ++++| +|++
T Consensus 31 ~~~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC--~~~Ggg~V~vP~G~yl~g~i~lkgpc~~~s~v~l------~L~~ 102 (404)
T PLN02188 31 GSSTFLFDVRSFGARANGHTDDSKAFMAAWKAAC--ASTGAVTLLIPPGTYYIGPVQFHGPCTNVSSLTF------TLKA 102 (404)
T ss_pred cCCceEEehhhcCcCCCCCeeCHHHHHHHHHHHh--ccCCCeEEEECCCeEEEEeEEeCCCcCcceeEEE------EEEc
Confidence 3556899999999999999999999999998653 46788999999999999999997 44444 8899
Q ss_pred cCCCCCCCcCCCCCCCCcccccCCCcceeeEEEeeeeeEEEeccCceeeCCCccccccccc--CCCCCCCCeeEEEEeec
Q 012788 109 SQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSS--QSLNYSRPHLVEFISSE 186 (456)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~--~~~~~~rp~~i~~~~~~ 186 (456)
+.+.++|+.. ..|+.+..++||+|+|. |+|||+|+.||+.... ......||++|.|.+|+
T Consensus 103 s~d~~~y~~~-----------------~~~i~~~~~~ni~I~G~-G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~ 164 (404)
T PLN02188 103 ATDLSRYGSG-----------------NDWIEFGWVNGLTLTGG-GTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMN 164 (404)
T ss_pred CCCHHHCCCc-----------------cceEEEeceeeEEEEee-EEEeCCCcccccccccccCCCCCcCceEEEEEeee
Confidence 9998888631 13566678999999996 9999999999975321 11234689999999999
Q ss_pred cEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccC
Q 012788 187 NVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYG 266 (456)
Q Consensus 187 nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~ 266 (456)
|++|+|++++|||+|++++..|++|+|++++|.++.+++|+||||+.+|+||+|+||+|.+|||||++|++
T Consensus 165 nv~i~gitl~nSp~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg--------- 235 (404)
T PLN02188 165 NTVVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQG--------- 235 (404)
T ss_pred eEEEeCeEEEcCCCeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccC---------
Confidence 99999999999999999999999999999999999889999999999999999999999999999999997
Q ss_pred CCcccEEEEEEEEecCCCCeeEecc----cccCcEEeEEEEeEEEECCcceEEEEecCC--CCceEEeEEEEceEecCcc
Q 012788 267 RPTTDVHIRRVLLQSSSGSSVAFGS----EMSGGISNVQVEKIHLYDSLNGIEFRTTKG--RGGYIRQIVISDAELYNIN 340 (456)
Q Consensus 267 ~~s~ni~I~n~~~~~~~~~gi~igs----~~~~~v~nI~v~n~~~~~~~~gi~iks~~g--~~g~v~nI~~~ni~~~~~~ 340 (456)
++||+|+|+.|.. +|||+||| ++.++|+||+|+||+|.++.+|+|||||.+ ++|+|+||+|+||+|++++
T Consensus 236 --~~nI~I~n~~c~~--ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~ 311 (404)
T PLN02188 236 --NSQVTITRIRCGP--GHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVT 311 (404)
T ss_pred --CccEEEEEEEEcC--CCcEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCcc
Confidence 8999999999964 79999999 566889999999999999999999999976 3589999999999999999
Q ss_pred eeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccc-eeEEEEeeCCCCeeeEEEEeEEEEeCCCC-CCcceeeeee
Q 012788 341 VAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT-IAGNFTGIQEAPFANICLSNISLSINPGS-YNSWECSNIH 418 (456)
Q Consensus 341 ~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~-~~~~~~g~~~~~~~~I~~~nv~i~~~~~~-~~~~~c~~v~ 418 (456)
+||.|++.|+++..+...+...+.|+||+|+||+++... .++.+.|+++.||+||+|+||+++.++++ ...|.|+|++
T Consensus 312 ~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~ 391 (404)
T PLN02188 312 NPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVR 391 (404)
T ss_pred ceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEEecCceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcce
Confidence 999999999875443222223368999999999999864 57889999999999999999999987543 3579999999
Q ss_pred eccc-cccCCCCC
Q 012788 419 GSSE-SVFPEPCP 430 (456)
Q Consensus 419 g~~~-~~~p~~c~ 430 (456)
|... .+.|++|+
T Consensus 392 g~~~g~~~p~~C~ 404 (404)
T PLN02188 392 AKYIGTQIPPPCP 404 (404)
T ss_pred eEEcccCcCCCCC
Confidence 9987 57788886
|
|
| >PLN03003 Probable polygalacturonase At3g15720 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-73 Score=570.30 Aligned_cols=358 Identities=29% Similarity=0.518 Sum_probs=312.7
Q ss_pred CceEEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCC-ceeeeeeEeccce---EEEeccCcEEEecCCCC
Q 012788 38 PHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSG-KWLTGSFNLTSHL---TLFLEKGAVILGSQNPS 113 (456)
Q Consensus 38 ~~~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G-~Yl~g~l~L~s~~---tL~l~~ga~i~~~~~~~ 113 (456)
+.++||++|||+|||++|||+|||+||++|| ++.+|++|+||+| +|++++|.|+++. .+.++..++|+++.. .
T Consensus 21 ~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC--~~~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~ap~~-~ 97 (456)
T PLN03003 21 SNALDVTQFGAVGDGVTDDSQAFLKAWEAVC--SGTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSK-G 97 (456)
T ss_pred eeEEehhhcCCCCCCCcccHHHHHHHHHHhh--hccCCCEEEECCCceEEeeeeEeCCCccCcceeeccCceEecCcc-c
Confidence 4679999999999999999999999999964 4578999999999 5899999998743 356667788887543 3
Q ss_pred CCCcCCCCCCCCcccccCCCcceeeEEEeeeeeEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeE
Q 012788 114 HWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNL 193 (456)
Q Consensus 114 ~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v 193 (456)
.|.. ....||.+.++++++|+|. |+|||+|+.||+. ...||++++|.+|+|++|+|+
T Consensus 98 ~w~~----------------~~~~wI~f~~~~~i~I~G~-GtIDGqG~~wW~~------~~~rP~~l~f~~~~nv~I~gi 154 (456)
T PLN03003 98 NWKG----------------DKDQWILFTDIEGLVIEGD-GEINGQGSSWWEH------KGSRPTALKFRSCNNLRLSGL 154 (456)
T ss_pred cccC----------------CCcceEEEEcccceEEecc-ceEeCCchhhhhc------ccCCceEEEEEecCCcEEeCe
Confidence 4531 1135899999999999997 9999999999974 246899999999999999999
Q ss_pred EEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEE
Q 012788 194 TFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVH 273 (456)
Q Consensus 194 ~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~ 273 (456)
+++|||+|++++..|++|+|++++|.++..++|+||||+.+|+||+|+||+|.+|||||++|+| ++||+
T Consensus 155 tl~NSp~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksg-----------s~NI~ 223 (456)
T PLN03003 155 THLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG-----------TSNIH 223 (456)
T ss_pred EEecCCcEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCC-----------CccEE
Confidence 9999999999999999999999999999889999999999999999999999999999999997 89999
Q ss_pred EEEEEEecCCCCeeEeccccc----CcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCcceeEEEeccC
Q 012788 274 IRRVLLQSSSGSSVAFGSEMS----GGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVAFGACGNC 349 (456)
Q Consensus 274 I~n~~~~~~~~~gi~igs~~~----~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~~i~i~~~y 349 (456)
|+||+|.. +|||+|||++. +.|+||+|+||+|.++.+|+|||||+|++|+|+||+|+||+|+++++||.|+++|
T Consensus 224 I~n~~c~~--GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~Idq~Y 301 (456)
T PLN03003 224 ISGIDCGP--GHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFY 301 (456)
T ss_pred EEeeEEEC--CCCeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCCCCeEEEEEEEEeEEecCccceEEEEccc
Confidence 99999974 89999999974 4599999999999999999999999998999999999999999999999999999
Q ss_pred CCCC-CC-CCCCCCCCeEEEEEEEEEEeeccc-eeEEEEeeCCCCeeeEEEEeEEEEeCC---CCCCcceeeeeeecccc
Q 012788 350 GSHP-DD-DFDPDALPAIDQITFKDIIGTNIT-IAGNFTGIQEAPFANICLSNISLSINP---GSYNSWECSNIHGSSES 423 (456)
Q Consensus 350 ~~~~-~~-~~~~~~~~~i~nIt~~nI~~~~~~-~~~~~~g~~~~~~~~I~~~nv~i~~~~---~~~~~~~c~~v~g~~~~ 423 (456)
++.. .. ...+...+.|+||+|+||+++... .++.|.|+++.||+||+|+||+|+... +....|.|+|++|....
T Consensus 302 ~~~~~~~~~~~~~s~v~IsnI~f~NI~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~ 381 (456)
T PLN03003 302 NGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTI 381 (456)
T ss_pred CCCCCCCcccCCCCCcEEEeEEEEeEEEEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCc
Confidence 8532 22 112223479999999999998764 577899999999999999999998763 22357999999999887
Q ss_pred ccCC-CCCCccC
Q 012788 424 VFPE-PCPELEN 434 (456)
Q Consensus 424 ~~p~-~c~~~~~ 434 (456)
+.|+ +|+++..
T Consensus 382 ~~~~~~C~~~~~ 393 (456)
T PLN03003 382 AVPGLECLELST 393 (456)
T ss_pred eECCCCccccCC
Confidence 6554 8998754
|
|
| >PLN03010 polygalacturonase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-72 Score=564.75 Aligned_cols=348 Identities=25% Similarity=0.417 Sum_probs=308.9
Q ss_pred CCceEEEeecCccCCCCCchHHHHHHHHHHhhccccCC--CcEEEecCC-ceeeeeeEecc-----ceEEEeccCcEEEe
Q 012788 37 RPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKG--GAQLYVPSG-KWLTGSFNLTS-----HLTLFLEKGAVILG 108 (456)
Q Consensus 37 ~~~~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~g--g~~v~iP~G-~Yl~g~l~L~s-----~~tL~l~~ga~i~~ 108 (456)
.+.++||+||||+|||++|||+|||+||++|| ..+ +++|+||+| +|++++|.|++ +++|+++ |+|++
T Consensus 43 ~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac---~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~--G~l~~ 117 (409)
T PLN03010 43 NGQNYNVLKFGAKGDGQTDDSNAFLQAWNATC---GGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLD--GIIVA 117 (409)
T ss_pred CCcEEeeeecCcCCCCCcccHHHHHHHHHHHc---cCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEc--cEEEc
Confidence 44789999999999999999999999999863 233 379999999 79999999995 6777776 89999
Q ss_pred cCCCCCCCcCCCCCCCCcccccCCCcceeeEEEeeeeeEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEEeeccE
Q 012788 109 SQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENV 188 (456)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv 188 (456)
+.+..+|+.. ....|+.+.+++|++|+|. |+|||+|+.||. +++|.+|+|+
T Consensus 118 ~~d~~~w~~~---------------~~~~wi~f~~v~nv~I~G~-G~IDG~G~~ww~-------------~l~~~~~~nv 168 (409)
T PLN03010 118 PSNIVAWSNP---------------KSQMWISFSTVSGLMIDGS-GTIDGRGSSFWE-------------ALHISKCDNL 168 (409)
T ss_pred cCChhhccCC---------------CCcceEEEecccccEEeec-eEEeCCCccccc-------------eEEEEeecCe
Confidence 9999888631 1134788899999999997 999999999996 4899999999
Q ss_pred EEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCC
Q 012788 189 VVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRP 268 (456)
Q Consensus 189 ~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~ 268 (456)
+|++++++|+|+|++++..|++++|++++|.++..++|+||||+.+|++|+|+||+|.++||||++|++
T Consensus 169 ~v~gitl~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksg----------- 237 (409)
T PLN03010 169 TINGITSIDSPKNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSG----------- 237 (409)
T ss_pred EEeeeEEEcCCceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCC-----------
Confidence 999999999999999999999999999999999889999999999999999999999999999999997
Q ss_pred cccEEEEEEEEecCCCCeeEecccccCc----EEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCcceeEE
Q 012788 269 TTDVHIRRVLLQSSSGSSVAFGSEMSGG----ISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVAFG 344 (456)
Q Consensus 269 s~ni~I~n~~~~~~~~~gi~igs~~~~~----v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~~i~ 344 (456)
+.|+.|+++.|.. +|||+|||++.++ |+||+|+||+|.++.+|+|||+|+|++|+|+||+|+||+|+++++||.
T Consensus 238 s~ni~I~~~~C~~--gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~ 315 (409)
T PLN03010 238 SSNINITQINCGP--GHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFENITLINTKNPII 315 (409)
T ss_pred CCcEEEEEEEeEC--cCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecCCCEEEEEeEEEeEEEecCCccEE
Confidence 7899999999974 8999999996543 999999999999999999999999989999999999999999999999
Q ss_pred EeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccc-eeEEEEeeCCCCeeeEEEEeEEEEeCCCCCCcceeeeeeecccc
Q 012788 345 ACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT-IAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGSSES 423 (456)
Q Consensus 345 i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~-~~~~~~g~~~~~~~~I~~~nv~i~~~~~~~~~~~c~~v~g~~~~ 423 (456)
|++.|++.......+...+.|+||+|+||+++... .++.|.|++..||+||+|+||+++.++++++.+.|.|+++....
T Consensus 316 I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~g~~~~~~C~nv~g~~~~ 395 (409)
T PLN03010 316 IDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSNENAITLKCSAITHCKDVVMDDIDVTMENGEKPKVECQNVEGESSD 395 (409)
T ss_pred EEeeccCCCCCCCCCCCceEEEeEEEEeeEEEeCCCccEEEEeCCCCCEeceEEEEEEEEecCCCccceEeeCccccccC
Confidence 99999874332223334469999999999999654 58899999999999999999999988766678999999998765
Q ss_pred -ccCCCCCC
Q 012788 424 -VFPEPCPE 431 (456)
Q Consensus 424 -~~p~~c~~ 431 (456)
+.|++|++
T Consensus 396 ~~~~~~C~~ 404 (409)
T PLN03010 396 TDLMRDCFK 404 (409)
T ss_pred CCCCCcccc
Confidence 55777984
|
|
| >PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-56 Score=443.54 Aligned_cols=312 Identities=32% Similarity=0.516 Sum_probs=264.6
Q ss_pred ccCCCcEEEecCCceeeeeeEec----cceEEEeccCcEEEecCCCCCCCcCCCCCCCCcccccCCCcceeeEEEeeeee
Q 012788 71 ADKGGAQLYVPSGKWLTGSFNLT----SHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRD 146 (456)
Q Consensus 71 ~~~gg~~v~iP~G~Yl~g~l~L~----s~~tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~n 146 (456)
++.++++|+||+|+|+++++.|+ +++++.|+ +++.++.....++ . ..||++.+++|
T Consensus 2 ~~~~~~~v~vP~g~~~~~~~~l~~~l~~~~~~~l~--G~~~~~~~~~~~~-----------------~-~~~i~~~~~~n 61 (326)
T PF00295_consen 2 SSIGGGTVVVPAGTYLLGPLFLKSTLHSDVGLTLD--GTINFSYDNWEGP-----------------N-SALIYAENAEN 61 (326)
T ss_dssp SEEEEESEEESTSTEEEEETSEETECETTCEEEEE--SEEEEG-EESTSE-------------------SEEEEEESEEE
T ss_pred cCCcCCEEEECCCCeEEceeEEEcccCCCeEEEEE--EEEEeCCCcccCC-----------------c-cEEEEEEceEE
Confidence 45677899999999999999998 56666665 5555552222221 1 47899999999
Q ss_pred EEEeccCceeeCCCccccccccc-CCCCCCCCeeEEEEeeccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCC
Q 012788 147 VVVTGDNGTIDGQGSVWWDWFSS-QSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESP 225 (456)
Q Consensus 147 i~I~G~~GtidG~g~~ww~~~~~-~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~ 225 (456)
++|+|. |+|||+|+.||+.... ......||+++.|.+|+|++|++++++|+|+|++++.+|++++|++++|.++...+
T Consensus 62 i~i~G~-G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~ 140 (326)
T PF00295_consen 62 ITITGK-GTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSP 140 (326)
T ss_dssp EECTTS-SEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCT
T ss_pred EEecCC-ceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCC
Confidence 999997 9999999999986543 13346799999999999999999999999999999999999999999999988889
Q ss_pred CCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccC----cEEeEE
Q 012788 226 YTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSG----GISNVQ 301 (456)
Q Consensus 226 n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~----~v~nI~ 301 (456)
|+|||++.+|+||+|+||+|.++||||++|++ ..||+|+||+|.. +||++|||++.+ .|+||+
T Consensus 141 NtDGid~~~s~nv~I~n~~i~~gDD~Iaiks~-----------~~ni~v~n~~~~~--ghGisiGS~~~~~~~~~i~nV~ 207 (326)
T PF00295_consen 141 NTDGIDIDSSKNVTIENCFIDNGDDCIAIKSG-----------SGNILVENCTCSG--GHGISIGSEGSGGSQNDIRNVT 207 (326)
T ss_dssp S--SEEEESEEEEEEESEEEESSSESEEESSE-----------ECEEEEESEEEES--SSEEEEEEESSSSE--EEEEEE
T ss_pred CcceEEEEeeeEEEEEEeecccccCccccccc-----------ccceEEEeEEEec--cccceeeeccCCccccEEEeEE
Confidence 99999999999999999999999999999996 5699999999985 799999999865 499999
Q ss_pred EEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccc-e
Q 012788 302 VEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT-I 380 (456)
Q Consensus 302 v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~-~ 380 (456)
|+||+|.++.+|++||++++++|.|+||+|+||+|+++++||.|++.|.+...+ ..+...+.|+||+|+||+++... .
T Consensus 208 ~~n~~i~~t~~gi~iKt~~~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~-~~~~~~~~i~nI~~~nitg~~~~~~ 286 (326)
T PF00295_consen 208 FENCTIINTDNGIRIKTWPGGGGYVSNITFENITMENVKYPIFIDQDYRDGGPC-GKPPSGVSISNITFRNITGTSAGSS 286 (326)
T ss_dssp EEEEEEESESEEEEEEEETTTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEES-SCSSSSSEEEEEEEEEEEEEESTSE
T ss_pred EEEEEeeccceEEEEEEecccceEEeceEEEEEEecCCceEEEEEecccccccc-CcccCCceEEEEEEEeeEEEeccce
Confidence 999999999999999999988999999999999999999999999998873222 22333468999999999999886 6
Q ss_pred eEEEEeeCCCCeeeEEEEeEEEEeCCCCCCcceeeeeeec
Q 012788 381 AGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGS 420 (456)
Q Consensus 381 ~~~~~g~~~~~~~~I~~~nv~i~~~~~~~~~~~c~~v~g~ 420 (456)
++.+.|.++.||+||+|+||+|+. . ...+.|+|+...
T Consensus 287 ~i~i~~~~~~~~~ni~f~nv~i~~-g--~~~~~c~nv~~~ 323 (326)
T PF00295_consen 287 AISIDCSPGSPCSNITFENVNITG-G--KKPAQCKNVPSG 323 (326)
T ss_dssp EEEEE-BTTSSEEEEEEEEEEEES-S--BSESEEBSCCTT
T ss_pred EEEEEECCcCcEEeEEEEeEEEEc-C--CcCeEEECCCCC
Confidence 889999999999999999999998 2 457999998743
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A .... |
| >COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-48 Score=394.48 Aligned_cols=301 Identities=33% Similarity=0.553 Sum_probs=255.8
Q ss_pred CCCceEEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCCceeeeeeEeccceEEEeccCcEEEecCCCCCC
Q 012788 36 PRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHW 115 (456)
Q Consensus 36 ~~~~~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~l~L~s~~tL~l~~ga~i~~~~~~~~~ 115 (456)
+....++|++|||+|||.+++++|||+||++| ++++|++|+||+|+|+.++|+|||+++|++++|+||+++.++.+|
T Consensus 78 ~~~t~~sv~~~ga~gDG~t~~~~aiq~AI~~c---a~a~Gg~V~lPaGtylsg~l~LKS~~~L~l~egatl~~~~~p~~y 154 (542)
T COG5434 78 ATDTAFSVSDDGAVGDGATDNTAAIQAAIDAC---ASAGGGTVLLPAGTYLSGPLFLKSNVTLHLAEGATLLASSNPKDY 154 (542)
T ss_pred cccceeeeccccccccCCccCHHHHHHHHHhh---hhhcCceEEECCceeEeeeEEEecccEEEecCCceeeCCCChhhc
Confidence 44568999999999999999999999999999 567999999999999999999999999999999999999999999
Q ss_pred Cc--------CCCC---------CCCCcccccCCCcceeeEEEeeeeeEE-EeccCceeeCCC----cccccccc--cCC
Q 012788 116 DV--------VDPL---------PSYGRGIELPGRRYKSLINGYMLRDVV-VTGDNGTIDGQG----SVWWDWFS--SQS 171 (456)
Q Consensus 116 ~~--------~~~~---------~~~~~g~~~~~~~~~~~i~~~~~~ni~-I~G~~GtidG~g----~~ww~~~~--~~~ 171 (456)
+. ..++ ..+++| +... +..++.....+|.. |.|. |+++|++ ..||.... ...
T Consensus 155 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~g--~~d~-~~~~~~~~~~~n~~~i~g~-~~i~g~~~~~g~~~~~~~g~~~~~ 230 (542)
T COG5434 155 PSFTSRFNGNSGPYVYATDSDNAMISGEG--LADG-KADLLIAGNSSNRKEIWGK-GTIDGNGYKRGDKWFSGLGAVETR 230 (542)
T ss_pred cccccccccccCcceeeecccCceeeeec--cccc-CcccceeccCCceEEEecc-ceecCccccchhhhhhcccchhhc
Confidence 84 1110 011112 1112 23344444556666 8996 9999965 22775443 112
Q ss_pred CCC--CCCeeEEEEeeccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCC
Q 012788 172 LNY--SRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGH 249 (456)
Q Consensus 172 ~~~--~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gD 249 (456)
... .||..+.+..|.||+++|++|.|++.|.+|+..|+|++++|++|.+.... |+||+++.+|+||+|++|+|.+||
T Consensus 231 i~~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtgD 309 (542)
T COG5434 231 IGGKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGD 309 (542)
T ss_pred ccccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecCC
Confidence 222 68999999999999999999999999999999999999999999998655 999999999999999999999999
Q ss_pred ceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeE
Q 012788 250 DAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQI 329 (456)
Q Consensus 250 D~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI 329 (456)
|||++|+|....+.....+++||+|+||++... ..++.+|||+.++|+||++|||.|.++.+|+|||+..+++|.++||
T Consensus 310 D~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~g-hG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~gG~v~nI 388 (542)
T COG5434 310 DCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSG-HGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRGGGVRNI 388 (542)
T ss_pred ceEEeecccCCcccccccccccEEEecceeccc-ccceEeeeecCCceeEEEEEeeeeccCcceeeeeeecccceeEEEE
Confidence 999999997777667788999999999999976 7788899999999999999999999999999999999999999999
Q ss_pred EEEceEecCcceeEEE
Q 012788 330 VISDAELYNINVAFGA 345 (456)
Q Consensus 330 ~~~ni~~~~~~~~i~i 345 (456)
+|++++|.++..+..+
T Consensus 389 ~~~~~~~~nv~t~~~i 404 (542)
T COG5434 389 VFEDNKMRNVKTKLSI 404 (542)
T ss_pred EEecccccCcccceee
Confidence 9999999998654444
|
|
| >TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-27 Score=232.53 Aligned_cols=166 Identities=20% Similarity=0.194 Sum_probs=128.3
Q ss_pred CceEEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCCceeeeeeEeccceEEEeccCcEEEecCCCCCCCc
Q 012788 38 PHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDV 117 (456)
Q Consensus 38 ~~~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~l~L~s~~tL~l~~ga~i~~~~~~~~~~~ 117 (456)
...+|+++|||++||++|+|+|||+||++| ++++++|.+|+|+|+.++|.|+++++|..+++++...-..
T Consensus 35 ~r~~dv~~fGa~~dG~td~T~ALQaAIdaA----a~gG~tV~Lp~G~Y~~G~L~L~spltL~G~~gAt~~vIdG------ 104 (455)
T TIGR03808 35 TLGRDATQYGVRPNSPDDQTRALQRAIDEA----ARAQTPLALPPGVYRTGPLRLPSGAQLIGVRGATRLVFTG------ 104 (455)
T ss_pred ccCCCHHHcCcCCCCcchHHHHHHHHHHHh----hcCCCEEEECCCceecccEEECCCcEEEecCCcEEEEEcC------
Confidence 344999999999999999999999999987 3467899999999999999999999999998886221000
Q ss_pred CCCCCCCCcccccCCCcceeeEEEeeeeeEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEEe
Q 012788 118 VDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLN 197 (456)
Q Consensus 118 ~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~n 197 (456)
. ..++...+.++|+|+| -+|+|+|..| ..++.+|.+..|++++|++++|++
T Consensus 105 ----------------~-~~lIiai~A~nVTIsG--LtIdGsG~dl----------~~rdAgI~v~~a~~v~Iedn~L~g 155 (455)
T TIGR03808 105 ----------------G-PSLLSSEGADGIGLSG--LTLDGGGIPL----------PQRRGLIHCQGGRDVRITDCEITG 155 (455)
T ss_pred ----------------C-ceEEEEecCCCeEEEe--eEEEeCCCcc----------cCCCCEEEEccCCceEEEeeEEEc
Confidence 0 2467778899999999 5999999755 246789999999999999999999
Q ss_pred CCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEec
Q 012788 198 APAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAM 247 (456)
Q Consensus 198 s~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~ 247 (456)
+..|++.+..|+ ..|.+.+|.... ..+|+++.+++++|++++|+.
T Consensus 156 sg~FGI~L~~~~-~~I~~N~I~g~~----~~~I~lw~S~g~~V~~N~I~g 200 (455)
T TIGR03808 156 SGGNGIWLETVS-GDISGNTITQIA----VTAIVSFDALGLIVARNTIIG 200 (455)
T ss_pred CCcceEEEEcCc-ceEecceEeccc----cceEEEeccCCCEEECCEEEc
Confidence 999999999999 444444444321 223555555555555555444
|
Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor. |
| >PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=184.68 Aligned_cols=220 Identities=29% Similarity=0.405 Sum_probs=127.5
Q ss_pred eEEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCCceeee-eeEeccceEEEeccC-cEEEe-cCCCCCCC
Q 012788 40 SVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTG-SFNLTSHLTLFLEKG-AVILG-SQNPSHWD 116 (456)
Q Consensus 40 ~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g-~l~L~s~~tL~l~~g-a~i~~-~~~~~~~~ 116 (456)
.+||++|||+|||++|||+|||+||+++ +++++++|+||+|+|++. +|.++++++|+++.+ .+++. ......+.
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~---~~~~g~~v~~P~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~ 77 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAA---AAAGGGVVYFPPGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFS 77 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHH---CSTTSEEEEE-SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSC
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhc---ccCCCeEEEEcCcEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccc
Confidence 4799999999999999999999999666 468999999999999998 499999999999766 33333 22222221
Q ss_pred cCCCCCCCCcccccCCCcceeeEEEeeeeeEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEE
Q 012788 117 VVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFL 196 (456)
Q Consensus 117 ~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ 196 (456)
.. .+..... ...+.+. ..++|++|.|. .... ......+.+..++++.|+++++.
T Consensus 78 ~~-------~~~~~~~-~~~~~~~-~~i~nl~i~~~-------~~~~----------~~~~~~i~~~~~~~~~i~nv~~~ 131 (225)
T PF12708_consen 78 VV-------PGIGVFD-SGNSNIG-IQIRNLTIDGN-------GIDP----------NNNNNGIRFNSSQNVSISNVRIE 131 (225)
T ss_dssp CE-------EEEEECC-SCSCCEE-EEEEEEEEEET-------CGCE-----------SCEEEEEETTEEEEEEEEEEEE
T ss_pred cc-------cceeeee-cCCCCce-EEEEeeEEEcc-------cccC----------CCCceEEEEEeCCeEEEEeEEEE
Confidence 00 0000000 0000000 12555666663 2111 00135678888889999999998
Q ss_pred eCCcceEEeecccceEEEEEEEECCCCCCCCceeeecC-ccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEE
Q 012788 197 NAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDS-SDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIR 275 (456)
Q Consensus 197 ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~-s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~ 275 (456)
|+...++.+..++...+.+.... .++.+.. +.++.+.++.+..+++++.. + .+++.++
T Consensus 132 ~~~~~~i~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~-----------~~~~~i~ 190 (225)
T PF12708_consen 132 NSGGDGIYFNTGTDYRIIGSTHV--------SGIFIDNGSNNVIVNNCIFNGGDNGIIL--G-----------NNNITIS 190 (225)
T ss_dssp S-SS-SEEEECCEECEEECCEEE--------EEEEEESCEEEEEEECEEEESSSCSEEC--E-----------EEEEEEE
T ss_pred ccCccEEEEEccccCcEeecccc--------eeeeeccceeEEEECCccccCCCceeEe--e-----------cceEEEE
Confidence 88777777765554444332221 1333332 24456677777776666321 1 3677777
Q ss_pred EEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcceE
Q 012788 276 RVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGI 314 (456)
Q Consensus 276 n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi 314 (456)
||++......||.+... .++.++|++|.++..|+
T Consensus 191 n~~~~~~~~~gi~i~~~-----~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 191 NNTFEGNCGNGINIEGG-----SNIIISNNTIENCDDGI 224 (225)
T ss_dssp CEEEESSSSESEEEEEC-----SEEEEEEEEEESSSEEE
T ss_pred eEEECCccceeEEEECC-----eEEEEEeEEEECCccCc
Confidence 77776533566666532 23666666666666554
|
... |
| >PLN03003 Probable polygalacturonase At3g15720 | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-19 Score=179.95 Aligned_cols=212 Identities=16% Similarity=0.190 Sum_probs=168.9
Q ss_pred eeEEEEeeccEEEEeEEEEeCC---cc--------eEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEe
Q 012788 178 HLVEFISSENVVVSNLTFLNAP---AY--------NIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIA 246 (456)
Q Consensus 178 ~~i~~~~~~nv~I~~v~i~ns~---~~--------~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~ 246 (456)
..|.|.+.+|++|.|--..+.. .| .+.+.+|+|++|+++++.+++. -.+++..|++|+|++.+|.
T Consensus 105 ~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~----w~i~i~~c~nV~i~~l~I~ 180 (456)
T PLN03003 105 QWILFTDIEGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPM----AHIHISECNYVTISSLRIN 180 (456)
T ss_pred ceEEEEcccceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCc----EEEEEeccccEEEEEEEEe
Confidence 4799999999999995555432 22 5789999999999999998763 3588899999999999998
Q ss_pred c-----CCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcceEEEEecCC
Q 012788 247 M-----GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKG 321 (456)
Q Consensus 247 ~-----gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~iks~~g 321 (456)
+ .-|||.+.+ ++||+|+||++... +++|+|++ +.+||+|+||++.. .+|+.|.+...
T Consensus 181 ap~~spNTDGIDi~~------------S~nV~I~n~~I~tG-DDCIaiks----gs~NI~I~n~~c~~-GHGISIGSlg~ 242 (456)
T PLN03003 181 APESSPNTDGIDVGA------------SSNVVIQDCIIATG-DDCIAINS----GTSNIHISGIDCGP-GHGISIGSLGK 242 (456)
T ss_pred CCCCCCCCCcEeecC------------cceEEEEecEEecC-CCeEEeCC----CCccEEEEeeEEEC-CCCeEEeeccC
Confidence 6 457888776 89999999999987 99999996 45899999999976 58999999742
Q ss_pred C--CceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccceeEEE---EeeC--------
Q 012788 322 R--GGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNF---TGIQ-------- 388 (456)
Q Consensus 322 ~--~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~~---~g~~-------- 388 (456)
. .+.|+||+++|+++.+..++++|+.+.+ +.+.++||+|+||++.+...|+.+ +|..
T Consensus 243 ~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~G----------g~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~ 312 (456)
T PLN03003 243 DGETATVENVCVQNCNFRGTMNGARIKTWQG----------GSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDR 312 (456)
T ss_pred CCCcceEEEEEEEeeEEECCCcEEEEEEeCC----------CCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccC
Confidence 2 2579999999999999999999998633 235899999999999999888876 2210
Q ss_pred ---CCCeeeEEEEeEEEEeCCCCC------Ccceeeeeeecc
Q 012788 389 ---EAPFANICLSNISLSINPGSY------NSWECSNIHGSS 421 (456)
Q Consensus 389 ---~~~~~~I~~~nv~i~~~~~~~------~~~~c~~v~g~~ 421 (456)
...++||+|+||+-+...... ...-|+|+.-..
T Consensus 313 ~~s~v~IsnI~f~NI~GTs~~~~ai~l~Cs~~~PC~nI~l~n 354 (456)
T PLN03003 313 KSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRD 354 (456)
T ss_pred CCCCcEEEeEEEEeEEEEeCccceEEEEeCCCCCeeeEEEEE
Confidence 125799999999987654321 233466666443
|
|
| >PLN02218 polygalacturonase ADPG | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-19 Score=183.14 Aligned_cols=215 Identities=15% Similarity=0.225 Sum_probs=169.3
Q ss_pred eeEEEEeeccEEEEe---EEEEeCC-------------------cceEEeecccceEEEEEEEECCCCCCCCceeeecCc
Q 012788 178 HLVEFISSENVVVSN---LTFLNAP-------------------AYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSS 235 (456)
Q Consensus 178 ~~i~~~~~~nv~I~~---v~i~ns~-------------------~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s 235 (456)
..+.+.+.+|++|+| -+|.... -..+.+.+|+|++|+++++.+++. -.+++..|
T Consensus 148 ~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~----w~i~~~~~ 223 (431)
T PLN02218 148 KWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQ----IQISIEKC 223 (431)
T ss_pred cCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCC----EEEEEEce
Confidence 358888999999998 4443211 124678899999999999999763 35889999
Q ss_pred cCEEEEecEEec-----CCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECC
Q 012788 236 DNVCIEDCIIAM-----GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDS 310 (456)
Q Consensus 236 ~nV~I~n~~i~~-----gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~ 310 (456)
+||+|+|.+|.+ +-|||.+.+ ++||+|+||++... +++|+|++ +.+||+|+||++..
T Consensus 224 ~nV~i~~v~I~a~~~spNTDGIdi~s------------s~nV~I~n~~I~tG-DDcIaIks----gs~nI~I~n~~c~~- 285 (431)
T PLN02218 224 SNVQVSNVVVTAPADSPNTDGIHITN------------TQNIRVSNSIIGTG-DDCISIES----GSQNVQINDITCGP- 285 (431)
T ss_pred eeEEEEEEEEeCCCCCCCCCcEeecc------------cceEEEEccEEecC-CceEEecC----CCceEEEEeEEEEC-
Confidence 999999999986 468888876 89999999999987 99999996 46899999999965
Q ss_pred cceEEEEecCCC--CceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccceeEEEEeeC
Q 012788 311 LNGIEFRTTKGR--GGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQ 388 (456)
Q Consensus 311 ~~gi~iks~~g~--~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~~~g~~ 388 (456)
.+|+.|.+.... .+.|+||+++|+++.+..++++|+.+.+ +.+.++||+|+||++.+...|+.+....
T Consensus 286 GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~G----------g~G~v~nI~f~ni~m~~V~~pI~Idq~Y 355 (431)
T PLN02218 286 GHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQG----------GSGTASNIIFQNIQMENVKNPIIIDQDY 355 (431)
T ss_pred CCCEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCC----------CCeEEEEEEEEeEEEEcccccEEEEeec
Confidence 589999987422 3689999999999999999999997532 3368999999999999998887763211
Q ss_pred -----------CCCeeeEEEEeEEEEeCCCCC------Ccceeeeeeeccccc
Q 012788 389 -----------EAPFANICLSNISLSINPGSY------NSWECSNIHGSSESV 424 (456)
Q Consensus 389 -----------~~~~~~I~~~nv~i~~~~~~~------~~~~c~~v~g~~~~~ 424 (456)
...++||+|+||+.+.+.... +..-|+|+.-....+
T Consensus 356 ~~~~~~~~~~s~v~I~nI~~~NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i 408 (431)
T PLN02218 356 CDKSKCTSQQSAVQVKNVVYRNISGTSASDVAITFNCSKNYPCQGIVLDNVNI 408 (431)
T ss_pred cCCCCCCCCCCCeEEEEEEEEeEEEEecCCcEEEEEECCCCCEeeEEEEeEEE
Confidence 124899999999998764321 234466666554443
|
|
| >PLN02793 Probable polygalacturonase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-18 Score=178.16 Aligned_cols=214 Identities=16% Similarity=0.192 Sum_probs=168.0
Q ss_pred eeEEEEeeccEEEEeEEEEeCCc--------------------ceEEeecccceEEEEEEEECCCCCCCCceeeecCccC
Q 012788 178 HLVEFISSENVVVSNLTFLNAPA--------------------YNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDN 237 (456)
Q Consensus 178 ~~i~~~~~~nv~I~~v~i~ns~~--------------------~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~n 237 (456)
..+.+.+.+|++|.|--..+... ..+.+.+|+|++|+++++.+++ .--+++..|+|
T Consensus 135 ~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp----~~~i~~~~~~n 210 (443)
T PLN02793 135 KWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQ----QMHIAFTNCRR 210 (443)
T ss_pred eEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCC----CeEEEEEccCc
Confidence 47888899999999865544221 1467889999999999999976 33488899999
Q ss_pred EEEEecEEec-----CCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcc
Q 012788 238 VCIEDCIIAM-----GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLN 312 (456)
Q Consensus 238 V~I~n~~i~~-----gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~ 312 (456)
|+|++.+|.+ ..|||.+.+ ++||+|+||++... +++|+|++ +.+||+|+||++... +
T Consensus 211 v~i~~l~I~~p~~spNTDGIdi~~------------s~nV~I~n~~I~~g-DDcIaik~----~s~nI~I~n~~c~~G-h 272 (443)
T PLN02793 211 VTISGLKVIAPATSPNTDGIHISA------------SRGVVIKDSIVRTG-DDCISIVG----NSSRIKIRNIACGPG-H 272 (443)
T ss_pred EEEEEEEEECCCCCCCCCcEeeec------------cceEEEEeCEEeCC-CCeEEecC----CcCCEEEEEeEEeCC-c
Confidence 9999999986 458888876 89999999999987 99999985 468999999999764 7
Q ss_pred eEEEEecCC--CCceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccceeEEEEe---e
Q 012788 313 GIEFRTTKG--RGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTG---I 387 (456)
Q Consensus 313 gi~iks~~g--~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~~~g---~ 387 (456)
|+.|.+... ..+.|+||+++|+++.+..++++|+.+.+ +.+.++||+|+||++.+...|+.+.. .
T Consensus 273 GisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g----------~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~ 342 (443)
T PLN02793 273 GISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQG----------GSGNASKITFQNIFMENVSNPIIIDQYYCD 342 (443)
T ss_pred cEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCC----------CCEEEEEEEEEeEEEecCCceEEEEeeecC
Confidence 999998632 23679999999999999999999997633 23589999999999999988887632 2
Q ss_pred CC---------CCeeeEEEEeEEEEeCCCCC------Ccceeeeeeecccc
Q 012788 388 QE---------APFANICLSNISLSINPGSY------NSWECSNIHGSSES 423 (456)
Q Consensus 388 ~~---------~~~~~I~~~nv~i~~~~~~~------~~~~c~~v~g~~~~ 423 (456)
.. ..++||+|+||+-+...... ...-|+|+.-...+
T Consensus 343 ~~~~~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~ 393 (443)
T PLN02793 343 SRKPCANQTSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQ 393 (443)
T ss_pred CCCCCCCCCCCeEEEeEEEEEEEEEEcccccEEEEeCCCCCEeeEEEEeeE
Confidence 11 24799999999987643211 23346666654443
|
|
| >PLN03010 polygalacturonase | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-18 Score=173.99 Aligned_cols=237 Identities=15% Similarity=0.198 Sum_probs=176.7
Q ss_pred eeEEEeccCceeeCCCc-ccccccccCCCCCCCCeeEEEEeeccEEEEeEEEEeCC---cc-eEEeecccceEEEEEEEE
Q 012788 145 RDVVVTGDNGTIDGQGS-VWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAP---AY-NIHPVYCSNVHIQNISVH 219 (456)
Q Consensus 145 ~ni~I~G~~GtidG~g~-~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~---~~-~i~~~~~~nv~i~n~~i~ 219 (456)
.++.+.=. |+|-+... ..|.. ......+.|.+.+|+.|.|--..+.. .| .+.+.+|+|++|+++++.
T Consensus 105 ~~v~l~l~-G~l~~~~d~~~w~~-------~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~~l~~~~~~nv~v~gitl~ 176 (409)
T PLN03010 105 TSIKVQLD-GIIVAPSNIVAWSN-------PKSQMWISFSTVSGLMIDGSGTIDGRGSSFWEALHISKCDNLTINGITSI 176 (409)
T ss_pred CcEEEEEc-cEEEccCChhhccC-------CCCcceEEEecccccEEeeceEEeCCCccccceEEEEeecCeEEeeeEEE
Confidence 35555543 66665433 22321 01234588999999999996666642 34 588999999999999999
Q ss_pred CCCCCCCCceeeecCccCEEEEecEEec-----CCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEeccccc
Q 012788 220 APPESPYTVGIVPDSSDNVCIEDCIIAM-----GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMS 294 (456)
Q Consensus 220 ~~~~~~n~DGi~~~~s~nV~I~n~~i~~-----gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~ 294 (456)
+++. --+++..|++|+|+|.+|.+ .-|||.+.+ ++||+|+||++... +++|+|++.
T Consensus 177 nsp~----~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~------------s~nV~I~n~~I~~g-DDcIaiksg-- 237 (409)
T PLN03010 177 DSPK----NHISIKTCNYVAISKINILAPETSPNTDGIDISY------------STNINIFDSTIQTG-DDCIAINSG-- 237 (409)
T ss_pred cCCc----eEEEEeccccEEEEEEEEeCCCCCCCCCceeeec------------cceEEEEeeEEecC-CCeEEecCC--
Confidence 9763 34888999999999999986 457777766 89999999999987 999999974
Q ss_pred CcEEeEEEEeEEEECCcceEEEEecCCC--CceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEE
Q 012788 295 GGISNVQVEKIHLYDSLNGIEFRTTKGR--GGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKD 372 (456)
Q Consensus 295 ~~v~nI~v~n~~~~~~~~gi~iks~~g~--~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~n 372 (456)
..++.|+++.+.. .+|+.|++.... ...|+||+|+|++|.+..++++|+.+.+ +.+.++||+|+|
T Consensus 238 --s~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G----------~~G~v~nItf~n 304 (409)
T PLN03010 238 --SSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQG----------GQGYARNISFEN 304 (409)
T ss_pred --CCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecC----------CCEEEEEeEEEe
Confidence 3567777777765 579999997432 2569999999999999999999997643 235899999999
Q ss_pred EEeeccceeEEEE---eeCC---------CCeeeEEEEeEEEEeCCCCC------Ccceeeeeeecc
Q 012788 373 IIGTNITIAGNFT---GIQE---------APFANICLSNISLSINPGSY------NSWECSNIHGSS 421 (456)
Q Consensus 373 I~~~~~~~~~~~~---g~~~---------~~~~~I~~~nv~i~~~~~~~------~~~~c~~v~g~~ 421 (456)
|++.+...|+.+. +..+ ..++||+|+||+-+...... ...-|+|+.-..
T Consensus 305 I~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~~~~~i~l~Cs~~~pC~ni~~~~ 371 (409)
T PLN03010 305 ITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSNENAITLKCSAITHCKDVVMDD 371 (409)
T ss_pred EEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEEeCCCccEEEEeCCCCCEeceEEEE
Confidence 9999998888763 2211 25799999999987654322 223466665443
|
|
| >PLN02155 polygalacturonase | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-18 Score=172.18 Aligned_cols=216 Identities=13% Similarity=0.149 Sum_probs=168.3
Q ss_pred eEEEEeeccEEEEeEEEEeCC--cc--------------eEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEe
Q 012788 179 LVEFISSENVVVSNLTFLNAP--AY--------------NIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIED 242 (456)
Q Consensus 179 ~i~~~~~~nv~I~~v~i~ns~--~~--------------~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n 242 (456)
.+.|.+.+|+.|.+=+|.... .| .+.+.+|++++|+++++.+++ .--+++..|+||+|++
T Consensus 108 wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp----~w~i~~~~~~nv~i~~ 183 (394)
T PLN02155 108 WILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQ----VSHMTLNGCTNVVVRN 183 (394)
T ss_pred eEEEECcCCCEEEccEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCC----CeEEEEECeeeEEEEE
Confidence 588889999999985553221 11 378899999999999999875 3348889999999999
Q ss_pred cEEec-----CCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcceEEEE
Q 012788 243 CIIAM-----GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFR 317 (456)
Q Consensus 243 ~~i~~-----gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~ik 317 (456)
.+|.+ .-|||.+.+ ++||+|+||++... +++|+|++ +.+||+|+||++.. .+|+.|+
T Consensus 184 v~I~~p~~~~NtDGidi~~------------s~nV~I~~~~I~~g-DDcIaik~----gs~nI~I~n~~c~~-GhGisIG 245 (394)
T PLN02155 184 VKLVAPGNSPNTDGFHVQF------------STGVTFTGSTVQTG-DDCVAIGP----GTRNFLITKLACGP-GHGVSIG 245 (394)
T ss_pred EEEECCCCCCCCCcccccc------------ceeEEEEeeEEecC-CceEEcCC----CCceEEEEEEEEEC-CceEEec
Confidence 99986 237777766 89999999999987 99999986 46899999999986 4899999
Q ss_pred ecCC--CCceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccceeEEEE---eeC----
Q 012788 318 TTKG--RGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFT---GIQ---- 388 (456)
Q Consensus 318 s~~g--~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~~~---g~~---- 388 (456)
+... ..+.|+||+++|+++.+..++++|+.+... +.+.++||+|+||++.+...|+.+. |..
T Consensus 246 S~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~---------~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~ 316 (394)
T PLN02155 246 SLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARP---------STGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGC 316 (394)
T ss_pred cccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCC---------CCEEEEEEEEEeEEEcCccccEEEEecccCCCCCC
Confidence 9632 257899999999999999999999975321 2368999999999999998887762 211
Q ss_pred -----CCCeeeEEEEeEEEEeCCCCC------Ccceeeeeeecccccc
Q 012788 389 -----EAPFANICLSNISLSINPGSY------NSWECSNIHGSSESVF 425 (456)
Q Consensus 389 -----~~~~~~I~~~nv~i~~~~~~~------~~~~c~~v~g~~~~~~ 425 (456)
...++||+|+||+.+.+.... ...-|+|+.-...++.
T Consensus 317 ~~~~s~v~i~~It~~ni~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~ 364 (394)
T PLN02155 317 PNEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLT 364 (394)
T ss_pred cCCCCCeEEEEEEEEeeEEEecCCceEEEEeCCCCCEEEEEEEeeEEE
Confidence 125899999999988763311 2344777765544443
|
|
| >PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-18 Score=171.37 Aligned_cols=225 Identities=21% Similarity=0.275 Sum_probs=169.8
Q ss_pred CeeEEEEeeccEEEEe-EEEEeCC-----------------cceEEeecccceEEEEEEEECCCCCCCCceeeecCccCE
Q 012788 177 PHLVEFISSENVVVSN-LTFLNAP-----------------AYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNV 238 (456)
Q Consensus 177 p~~i~~~~~~nv~I~~-v~i~ns~-----------------~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV 238 (456)
..+|.+.+++|+.|.| -+|.... ...+.+..|++++|+++++.+++. -.+++..|+||
T Consensus 51 ~~~i~~~~~~ni~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~----w~~~~~~~~nv 126 (326)
T PF00295_consen 51 SALIYAENAENITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPF----WHIHINDCDNV 126 (326)
T ss_dssp SEEEEEESEEEEECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SS----ESEEEESEEEE
T ss_pred cEEEEEEceEEEEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCCe----eEEEEEccCCe
Confidence 4578899999999998 4443211 124788999999999999999763 34888899999
Q ss_pred EEEecEEec-----CCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcce
Q 012788 239 CIEDCIIAM-----GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNG 313 (456)
Q Consensus 239 ~I~n~~i~~-----gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~g 313 (456)
+|++.+|.+ ..|||.+.+ ++||+|+||++... +++|++++.. .||+|+||++.+ .+|
T Consensus 127 ~i~~i~I~~~~~~~NtDGid~~~------------s~nv~I~n~~i~~g-DD~Iaiks~~----~ni~v~n~~~~~-ghG 188 (326)
T PF00295_consen 127 TISNITINNPANSPNTDGIDIDS------------SKNVTIENCFIDNG-DDCIAIKSGS----GNILVENCTCSG-GHG 188 (326)
T ss_dssp EEESEEEEEGGGCTS--SEEEES------------EEEEEEESEEEESS-SESEEESSEE----CEEEEESEEEES-SSE
T ss_pred EEcceEEEecCCCCCcceEEEEe------------eeEEEEEEeecccc-cCcccccccc----cceEEEeEEEec-ccc
Confidence 999999986 358888876 89999999999987 9999999754 399999999986 478
Q ss_pred EEEEecCCCC--ceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccceeEEEEe-eC--
Q 012788 314 IEFRTTKGRG--GYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTG-IQ-- 388 (456)
Q Consensus 314 i~iks~~g~~--g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~~~g-~~-- 388 (456)
+.|.+....+ ..|+||+|+|+++.+..++++|+... .+.+.|+||+|+||+++....|+.+.- +.
T Consensus 189 isiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~----------~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~ 258 (326)
T PF00295_consen 189 ISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWP----------GGGGYVSNITFENITMENVKYPIFIDQDYRDG 258 (326)
T ss_dssp EEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEET----------TTSEEEEEEEEEEEEEEEESEEEEEEEEECTT
T ss_pred ceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEec----------ccceEEeceEEEEEEecCCceEEEEEeccccc
Confidence 9999875322 36999999999999999999998753 233699999999999999887776631 11
Q ss_pred --------CCCeeeEEEEeEEEEeCCC------CCCcceeeeeeeccccc----cCCCCCCcc
Q 012788 389 --------EAPFANICLSNISLSINPG------SYNSWECSNIHGSSESV----FPEPCPELE 433 (456)
Q Consensus 389 --------~~~~~~I~~~nv~i~~~~~------~~~~~~c~~v~g~~~~~----~p~~c~~~~ 433 (456)
...++||+|+||+.+.... ..+...|+|+.-....+ .+..|.+++
T Consensus 259 ~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~g~~~~~c~nv~ 321 (326)
T PF00295_consen 259 GPCGKPPSGVSISNITFRNITGTSAGSSAISIDCSPGSPCSNITFENVNITGGKKPAQCKNVP 321 (326)
T ss_dssp EESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE-BTTSSEEEEEEEEEEEESSBSESEEBSCC
T ss_pred cccCcccCCceEEEEEEEeeEEEeccceEEEEEECCcCcEEeEEEEeEEEEcCCcCeEEECCC
Confidence 1359999999999988762 11233466666544333 234466544
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A .... |
| >PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.7e-18 Score=168.88 Aligned_cols=271 Identities=20% Similarity=0.264 Sum_probs=157.7
Q ss_pred CcEEEecCCceeeee---eEeccce-EEEeccCcEEEecCCCCCCCcCCCCCCCCcccccCCCcceeeEEEeeeeeEEEe
Q 012788 75 GAQLYVPSGKWLTGS---FNLTSHL-TLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVT 150 (456)
Q Consensus 75 g~~v~iP~G~Yl~g~---l~L~s~~-tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~ 150 (456)
..+|||+||+|.++. +.|++++ +++|++||.+++. +.+....+|+.|+
T Consensus 232 ~~~lYF~PGVy~ig~~~~l~L~sn~~~VYlApGAyVkGA----------------------------f~~~~~~~nv~i~ 283 (582)
T PF03718_consen 232 KDTLYFKPGVYWIGSDYHLRLPSNTKWVYLAPGAYVKGA----------------------------FEYTDTQQNVKIT 283 (582)
T ss_dssp SSEEEE-SEEEEEBCTC-EEE-TT--EEEE-TTEEEES-----------------------------EEE---SSEEEEE
T ss_pred cceEEeCCceEEeCCCccEEECCCccEEEEcCCcEEEEE----------------------------EEEccCCceEEEE
Confidence 469999999999984 9999985 9999999987652 2223578999999
Q ss_pred ccCceeeCCCcccccccccC------CCCC--CCCeeEE---EEeeccEEEEeEEEEeCCcceEEeeccc----ceEEEE
Q 012788 151 GDNGTIDGQGSVWWDWFSSQ------SLNY--SRPHLVE---FISSENVVVSNLTFLNAPAYNIHPVYCS----NVHIQN 215 (456)
Q Consensus 151 G~~GtidG~g~~ww~~~~~~------~~~~--~rp~~i~---~~~~~nv~I~~v~i~ns~~~~i~~~~~~----nv~i~n 215 (456)
|. |++.|....|....... .... ..-+++. ...+.+++++|++|.++|+|.+.+.+.. ...|+|
T Consensus 284 G~-GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~n 362 (582)
T PF03718_consen 284 GR-GVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISN 362 (582)
T ss_dssp SS-SEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEE
T ss_pred ee-EEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeec
Confidence 97 99999887663211111 0001 1124555 3456699999999999999999998555 489999
Q ss_pred EEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCC-CCeeEeccccc
Q 012788 216 ISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSS-GSSVAFGSEMS 294 (456)
Q Consensus 216 ~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~-~~gi~igs~~~ 294 (456)
.++.... ..++|||.+. ++-+|+||++++.||+|.+. -+++.|+||++|... +.-+.+|.. .
T Consensus 363 yKqVGaW-~~qtDGi~ly--~nS~i~dcF~h~nDD~iKlY-------------hS~v~v~~~ViWk~~Ngpiiq~GW~-p 425 (582)
T PF03718_consen 363 YKQVGAW-YFQTDGIELY--PNSTIRDCFIHVNDDAIKLY-------------HSNVSVSNTVIWKNENGPIIQWGWT-P 425 (582)
T ss_dssp EEEE----CTT----B----TT-EEEEEEEEESS-SEE---------------STTEEEEEEEEEE-SSS-SEE--CS--
T ss_pred eeeeeeE-EeccCCcccc--CCCeeeeeEEEecCchhhee-------------ecCcceeeeEEEecCCCCeEEeecc-c
Confidence 9999865 4589999996 67788999999999999664 389999999999752 233444433 3
Q ss_pred CcEEeEEEEeEEEECC---------cceEEEEecCC----C------CceEEeEEEEceEecCcc-eeEEEeccCCCCCC
Q 012788 295 GGISNVQVEKIHLYDS---------LNGIEFRTTKG----R------GGYIRQIVISDAELYNIN-VAFGACGNCGSHPD 354 (456)
Q Consensus 295 ~~v~nI~v~n~~~~~~---------~~gi~iks~~g----~------~g~v~nI~~~ni~~~~~~-~~i~i~~~y~~~~~ 354 (456)
..+.||.|+|+.+.++ ..+|...+..- . .-.|++++|+|+++++.- ..+.|...
T Consensus 426 r~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~pl------ 499 (582)
T PF03718_consen 426 RNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYPL------ 499 (582)
T ss_dssp --EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE--S------
T ss_pred cccCceEEeeeEEEeeeeecccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEeec------
Confidence 5699999999999876 23444433211 1 135899999999999854 44556421
Q ss_pred CCCCCCCCCeEEEEEEEEEEee-----ccc--e-eEE-EEee---CCCCeeeEEEEeEEEEeC
Q 012788 355 DDFDPDALPAIDQITFKDIIGT-----NIT--I-AGN-FTGI---QEAPFANICLSNISLSIN 405 (456)
Q Consensus 355 ~~~~~~~~~~i~nIt~~nI~~~-----~~~--~-~~~-~~g~---~~~~~~~I~~~nv~i~~~ 405 (456)
.-.+|+.++|+... ... + -.. ..+. ......+|.|+|.++.++
T Consensus 500 --------qn~~nl~ikN~~~~~w~~~~~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg~ 554 (582)
T PF03718_consen 500 --------QNYDNLVIKNVHFESWNGLDITSQVSGLKAYYNMANNKQNDTMGIIIENWTVGGE 554 (582)
T ss_dssp --------EEEEEEEEEEEEECEET-CGCSTT-EEE---CCTTT--B--EEEEEEEEEEETTE
T ss_pred --------CCCcceEEEEeecccccCcccccceeeccccccccccccccccceEEEeEEECCE
Confidence 12344555555544 111 1 111 1111 234578999999998654
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X. |
| >PLN02188 polygalacturonase/glycoside hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-17 Score=167.69 Aligned_cols=216 Identities=16% Similarity=0.182 Sum_probs=166.3
Q ss_pred eEEEEeeccEEEEeEEEEeCC---cc----------------eEEeecccceEEEEEEEECCCCCCCCceeeecCccCEE
Q 012788 179 LVEFISSENVVVSNLTFLNAP---AY----------------NIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVC 239 (456)
Q Consensus 179 ~i~~~~~~nv~I~~v~i~ns~---~~----------------~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~ 239 (456)
.+.|.+++|++|.|--..|.. .| .+.+.+|++++|+++++.+++. -.+++..|++|+
T Consensus 115 ~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~----w~i~~~~~~~v~ 190 (404)
T PLN02188 115 WIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKF----FHIALVECRNFK 190 (404)
T ss_pred eEEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCC----eEEEEEccccEE
Confidence 466777889999885554432 12 3578899999999999999763 458899999999
Q ss_pred EEecEEec-----CCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcceE
Q 012788 240 IEDCIIAM-----GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGI 314 (456)
Q Consensus 240 I~n~~i~~-----gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi 314 (456)
|++.+|.+ .-|||.+.+ ++||+|+||++... +++|+|++. .+||+|+|+++.. .+|+
T Consensus 191 i~~v~I~~~~~spNtDGidi~~------------s~nV~I~n~~I~~G-DDcIaiksg----~~nI~I~n~~c~~-ghGi 252 (404)
T PLN02188 191 GSGLKISAPSDSPNTDGIHIER------------SSGVYISDSRIGTG-DDCISIGQG----NSQVTITRIRCGP-GHGI 252 (404)
T ss_pred EEEEEEeCCCCCCCCCcEeeeC------------cccEEEEeeEEeCC-CcEEEEccC----CccEEEEEEEEcC-CCcE
Confidence 99999986 458888876 89999999999987 999999864 4799999999965 4899
Q ss_pred EEEecC--CCCceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccceeEEEE---ee--
Q 012788 315 EFRTTK--GRGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFT---GI-- 387 (456)
Q Consensus 315 ~iks~~--g~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~~~---g~-- 387 (456)
.|.+.. +..+.|+||+|+|+++.+..++++|+.+.+. + +.+.++||+|+||++.+...|+.+. |.
T Consensus 253 siGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~-------~-~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~ 324 (404)
T PLN02188 253 SVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANS-------P-GKSAATNMTFENIVMNNVTNPIIIDQKYCPFY 324 (404)
T ss_pred EeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCC-------C-CceEEEEEEEEeEEecCccceEEEEccccCCC
Confidence 998853 1246699999999999999999999975332 1 1258999999999999988887763 21
Q ss_pred -------CCCCeeeEEEEeEEEEeCCCCC------Ccceeeeeeeccccc
Q 012788 388 -------QEAPFANICLSNISLSINPGSY------NSWECSNIHGSSESV 424 (456)
Q Consensus 388 -------~~~~~~~I~~~nv~i~~~~~~~------~~~~c~~v~g~~~~~ 424 (456)
....++||+|+||+-+...... ...-|+|+.-...++
T Consensus 325 ~~~~~~~s~v~I~nIt~~nI~gt~~~~~a~~l~cs~~~pc~ni~~~nV~i 374 (404)
T PLN02188 325 SCESKYPSGVTLSDIYFKNIRGTSSSQVAVLLKCSRGVPCQGVYLQDVHL 374 (404)
T ss_pred CCCcCCCCCcEEEeEEEEEEEEEecCceEEEEEECCCCCEeeEEEEeeEE
Confidence 1135899999999987754311 223466666544443
|
|
| >TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.7e-15 Score=145.39 Aligned_cols=196 Identities=17% Similarity=0.222 Sum_probs=135.9
Q ss_pred HHHHHHHhhccccCCCcEEEecCCceee-eeeEec-cceEEEeccCcEEEecCCCCCCCcCCCCCCCCcccccCCCccee
Q 012788 60 FQNAIFYLKSFADKGGAQLYVPSGKWLT-GSFNLT-SHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKS 137 (456)
Q Consensus 60 iq~Ai~~a~~~~~~gg~~v~iP~G~Yl~-g~l~L~-s~~tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 137 (456)
||+|+++| +.|.+|+||+|+|.+ ++|.+. ++++|..+..
T Consensus 1 iQ~Ai~~A-----~~GDtI~l~~G~Y~~~~~l~I~~~~Iti~G~g~---------------------------------- 41 (314)
T TIGR03805 1 LQEALIAA-----QPGDTIVLPEGVFQFDRTLSLDADGVTIRGAGM---------------------------------- 41 (314)
T ss_pred CHhHHhhC-----CCCCEEEECCCEEEcceeEEEeCCCeEEEecCC----------------------------------
Confidence 69999987 678999999999975 567775 5666654311
Q ss_pred eEEEeeeeeEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEEeCCcceEEeecccceEEEEEE
Q 012788 138 LINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNIS 217 (456)
Q Consensus 138 ~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~ 217 (456)
+.. +||+.++. .....+ ...+++|+|++++++++..+++.+..|++++|++++
T Consensus 42 -------~~t-------vid~~~~~------------~~~~~i-~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~ 94 (314)
T TIGR03805 42 -------DET-------ILDFSGQV------------GGAEGL-LVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLR 94 (314)
T ss_pred -------Ccc-------EEecccCC------------CCCceE-EEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeE
Confidence 001 12211110 001123 335788999999999988888988899999999998
Q ss_pred EECCCC---CCCCceeeecCccCEEEEecEEec-CCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccc
Q 012788 218 VHAPPE---SPYTVGIVPDSSDNVCIEDCIIAM-GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEM 293 (456)
Q Consensus 218 i~~~~~---~~n~DGi~~~~s~nV~I~n~~i~~-gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~ 293 (456)
+..... ....+||.+..|++++|++|+++. .|+||.++. +++++|+||+++.. ..||.+.
T Consensus 95 i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~------------s~~~~v~nN~~~~n-~~GI~i~--- 158 (314)
T TIGR03805 95 VEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ------------SQNIVVRNNVAEEN-VAGIEIE--- 158 (314)
T ss_pred EEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECC------------CCCeEEECCEEccC-cceEEEE---
Confidence 874321 124678999889999999999987 455787765 78999999999876 6787775
Q ss_pred cCcEEeEEEEeEEEECCcceEEEEecCCCC-ceEEeEEEEceEecCc
Q 012788 294 SGGISNVQVEKIHLYDSLNGIEFRTTKGRG-GYIRQIVISDAELYNI 339 (456)
Q Consensus 294 ~~~v~nI~v~n~~~~~~~~gi~iks~~g~~-g~v~nI~~~ni~~~~~ 339 (456)
...++.|+|+++.+...|+.+-..++.. ..-+++++++.++.+.
T Consensus 159 --~S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 159 --NSQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDN 203 (314)
T ss_pred --ecCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECC
Confidence 2457788888888877888886554321 1235677776666543
|
Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown. |
| >COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-12 Score=133.74 Aligned_cols=213 Identities=17% Similarity=0.246 Sum_probs=156.2
Q ss_pred ceeeEEEeeeeeEEEeccCceeeCCCc--cccccccc---------CCCCCCCCeeEEEEeeccEEEEeEEEEeCCcceE
Q 012788 135 YKSLINGYMLRDVVVTGDNGTIDGQGS--VWWDWFSS---------QSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNI 203 (456)
Q Consensus 135 ~~~~i~~~~~~ni~I~G~~GtidG~g~--~ww~~~~~---------~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i 203 (456)
+.+.++.....+..+.+. |.+|+.+. .||..... ....+.|+.. .+.... .....+.-+-.+..++
T Consensus 165 ~~~~~~a~~~~~~~~~~~-g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~-~~~~~g-~~~~~i~~~~~rp~~~ 241 (542)
T COG5434 165 SGPYVYATDSDNAMISGE-GLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDK-WFSGLG-AVETRIGGKGVRPRTV 241 (542)
T ss_pred cCcceeeecccCceeeee-cccccCcccceeccCCceEEEeccceecCccccchhh-hhhccc-chhhcccccCcCCceE
Confidence 456778888888889986 88876433 34432110 0011112210 000000 0011111111244578
Q ss_pred EeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCC----ceEecCCCCCccccccCCCcccEEEEEEEE
Q 012788 204 HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGH----DAISLKSGWDEYGIAYGRPTTDVHIRRVLL 279 (456)
Q Consensus 204 ~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gD----D~iai~sg~~~~g~~~~~~s~ni~I~n~~~ 279 (456)
.+..|+||.+++++|.+++ -.++|+..|+|++++|.+|.+.+ |++.+.+ |+|++|++|+|
T Consensus 242 ~l~~c~NV~~~g~~i~ns~----~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s------------c~NvlI~~~~f 305 (542)
T COG5434 242 VLKGCRNVLLEGLNIKNSP----LWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS------------CSNVLIEGCRF 305 (542)
T ss_pred EEeccceEEEeeeEecCCC----cEEEeeecccCceecceEEECCCCCCCCcccccc------------ceeEEEeccEE
Confidence 9999999999999999976 36899999999999999999844 4777776 99999999999
Q ss_pred ecCCCCeeEeccccc-------CcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCcceeEEEeccCCCC
Q 012788 280 QSSSGSSVAFGSEMS-------GGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVAFGACGNCGSH 352 (456)
Q Consensus 280 ~~~~~~gi~igs~~~-------~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~ 352 (456)
... +++|++++... +.-++|+|+||.|.....++-+.++. +|.|+||++||+.|.+...+++|+....
T Consensus 306 dtg-DD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~--~ggv~ni~ved~~~~~~d~GLRikt~~~-- 380 (542)
T COG5434 306 DTG-DDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEM--GGGVQNITVEDCVMDNTDRGLRIKTNDG-- 380 (542)
T ss_pred ecC-CceEEeecccCCcccccccccccEEEecceecccccceEeeeec--CCceeEEEEEeeeeccCcceeeeeeecc--
Confidence 986 99999998742 23689999999999888888888885 7899999999999999999999987643
Q ss_pred CCCCCCCCCCCeEEEEEEEEEEeeccc
Q 012788 353 PDDDFDPDALPAIDQITFKDIIGTNIT 379 (456)
Q Consensus 353 ~~~~~~~~~~~~i~nIt~~nI~~~~~~ 379 (456)
+.+.++||+|+++.+....
T Consensus 381 --------~gG~v~nI~~~~~~~~nv~ 399 (542)
T COG5434 381 --------RGGGVRNIVFEDNKMRNVK 399 (542)
T ss_pred --------cceeEEEEEEecccccCcc
Confidence 2368999999999998874
|
|
| >PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A | Back alignment and domain information |
|---|
Probab=98.85 E-value=5e-08 Score=85.92 Aligned_cols=142 Identities=19% Similarity=0.231 Sum_probs=103.4
Q ss_pred eEEEEeeccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCC
Q 012788 179 LVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGW 258 (456)
Q Consensus 179 ~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~ 258 (456)
.|.+....+++|++++|.+....++.+..+..++|++++|.. ...|+.+....++.+++|.+.....++.+..
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~~-- 74 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNGSGIYVSG-- 74 (158)
T ss_dssp CEEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-SEEEECCS--
T ss_pred EEEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEccceEEEEe--
Confidence 367777889999999999999999999999999999999998 3678999988999999999998776676664
Q ss_pred CccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCc-ceEEEEecCCCCceEEeEEEEceEec
Q 012788 259 DEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSL-NGIEFRTTKGRGGYIRQIVISDAELY 337 (456)
Q Consensus 259 ~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~-~gi~iks~~g~~g~v~nI~~~ni~~~ 337 (456)
+.+++|++|.+......||.+.. ...+++|++|+|.+.. .|+.+.... -.++++++.++.
T Consensus 75 ----------~~~~~i~~~~i~~~~~~gi~~~~----~~~~~~i~~n~~~~~~~~gi~~~~~~-----~~~~~i~~n~i~ 135 (158)
T PF13229_consen 75 ----------SSNITIENNRIENNGDYGIYISN----SSSNVTIENNTIHNNGGSGIYLEGGS-----SPNVTIENNTIS 135 (158)
T ss_dssp -----------CS-EEES-EEECSSS-SCE-TC----EECS-EEES-EEECCTTSSCEEEECC-------S-EEECEEEE
T ss_pred ----------cCCceecCcEEEcCCCccEEEec----cCCCEEEEeEEEEeCcceeEEEECCC-----CCeEEEEEEEEE
Confidence 79999999999987455888863 3567999999999876 788887642 246788888887
Q ss_pred Ccc-eeEEEe
Q 012788 338 NIN-VAFGAC 346 (456)
Q Consensus 338 ~~~-~~i~i~ 346 (456)
+.. .+|.+.
T Consensus 136 ~~~~~gi~~~ 145 (158)
T PF13229_consen 136 NNGGNGIYLI 145 (158)
T ss_dssp CESSEEEE-T
T ss_pred eCcceeEEEE
Confidence 754 676653
|
|
| >TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-07 Score=95.96 Aligned_cols=143 Identities=15% Similarity=0.125 Sum_probs=111.1
Q ss_pred eEEEEeeccEEEEeEEEEeCC------cceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEec-CCce
Q 012788 179 LVEFISSENVVVSNLTFLNAP------AYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAM-GHDA 251 (456)
Q Consensus 179 ~i~~~~~~nv~I~~v~i~ns~------~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-gDD~ 251 (456)
++.-...+||+|+|++|.++. ...|++..|++++|++++|.++. .-||.+..|+ ..|.++.|.. .+..
T Consensus 108 lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg----~FGI~L~~~~-~~I~~N~I~g~~~~~ 182 (455)
T TIGR03808 108 LLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSG----GNGIWLETVS-GDISGNTITQIAVTA 182 (455)
T ss_pred EEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCC----cceEEEEcCc-ceEecceEeccccce
Confidence 455667899999999999976 34788899999999999999842 3689999998 7788888776 6666
Q ss_pred EecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEeccc-------------------------ccC------cEEeE
Q 012788 252 ISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSE-------------------------MSG------GISNV 300 (456)
Q Consensus 252 iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~-------------------------~~~------~v~nI 300 (456)
|.+.. +++..|+++++.+.++.||.|.-. ..+ ...++
T Consensus 183 I~lw~------------S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v 250 (455)
T TIGR03808 183 IVSFD------------ALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNV 250 (455)
T ss_pred EEEec------------cCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCe
Confidence 65544 899999999999876778876522 011 25679
Q ss_pred EEEeEEEECCc-ceEEEEecCCCCceEEeEEEEceEecCcce-eEEE
Q 012788 301 QVEKIHLYDSL-NGIEFRTTKGRGGYIRQIVISDAELYNINV-AFGA 345 (456)
Q Consensus 301 ~v~n~~~~~~~-~gi~iks~~g~~g~v~nI~~~ni~~~~~~~-~i~i 345 (456)
+|+++++.++. .|+++.+. +|+.|++.+++++++ +++.
T Consensus 251 ~V~gN~I~~~r~dgI~~nss-------s~~~i~~N~~~~~R~~alhy 290 (455)
T TIGR03808 251 IVRGNRIRNCDYSAVRGNSA-------SNIQITGNSVSDVREVALYS 290 (455)
T ss_pred EEECCEEeccccceEEEEcc-------cCcEEECcEeeeeeeeEEEE
Confidence 99999999998 89999875 567777777777776 6553
|
Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor. |
| >TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.7e-07 Score=90.43 Aligned_cols=152 Identities=18% Similarity=0.235 Sum_probs=116.8
Q ss_pred eEEEEeeccEEEEeEEEEe-------CCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCce
Q 012788 179 LVEFISSENVVVSNLTFLN-------APAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDA 251 (456)
Q Consensus 179 ~i~~~~~~nv~I~~v~i~n-------s~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~ 251 (456)
.|.+..+++++|+++++.. ...+++.+..|++++|+++++.... .+||.+..|++++|+|++++....|
T Consensus 79 GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~----d~GIyv~~s~~~~v~nN~~~~n~~G 154 (314)
T TIGR03805 79 GVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGAS----DAGIYVGQSQNIVVRNNVAEENVAG 154 (314)
T ss_pred eEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCC----cccEEECCCCCeEEECCEEccCcce
Confidence 5788899999999999972 3468999999999999999998742 3599999999999999999998888
Q ss_pred EecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEeccccc---CcEEeEEEEeEEEECCcc------eEEEEecCCC
Q 012788 252 ISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMS---GGISNVQVEKIHLYDSLN------GIEFRTTKGR 322 (456)
Q Consensus 252 iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~---~~v~nI~v~n~~~~~~~~------gi~iks~~g~ 322 (456)
|.+.. +.++.|+++++... ..|+.+-+... ...++++|+++.+.+... |-.+...+..
T Consensus 155 I~i~~------------S~~~~v~~N~~~~N-~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g 221 (314)
T TIGR03805 155 IEIEN------------SQNADVYNNIATNN-TGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAG 221 (314)
T ss_pred EEEEe------------cCCcEEECCEEecc-ceeEEEeecCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCCC
Confidence 88765 78999999999987 67998844321 245789999999986531 1112112222
Q ss_pred CceE----EeEEEEceEecCcce-eEEEec
Q 012788 323 GGYI----RQIVISDAELYNINV-AFGACG 347 (456)
Q Consensus 323 ~g~v----~nI~~~ni~~~~~~~-~i~i~~ 347 (456)
.|.+ ++++|+|.++.+... ++.+..
T Consensus 222 ~Gi~i~~~~~v~I~~N~i~~n~~~~i~~~~ 251 (314)
T TIGR03805 222 TGVVVMANRDVEIFGNVISNNDTANVLISS 251 (314)
T ss_pred cEEEEEcccceEEECCEEeCCcceeEEEEe
Confidence 3443 899999999988764 566643
|
Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown. |
| >PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.5e-08 Score=91.23 Aligned_cols=127 Identities=13% Similarity=0.208 Sum_probs=91.9
Q ss_pred EEEeeccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCC-----Cceee------ecCccCEEEEecEEecCC
Q 012788 181 EFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPY-----TVGIV------PDSSDNVCIEDCIIAMGH 249 (456)
Q Consensus 181 ~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n-----~DGi~------~~~s~nV~I~n~~i~~gD 249 (456)
.|+.|+++++++++|-|++.. +..|++++++|+.+.+.....+ -||+. +++++||.|+|+.+.+.|
T Consensus 93 ~fR~~~~i~L~nv~~~~A~Et---~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKD 169 (277)
T PF12541_consen 93 MFRECSNITLENVDIPDADET---LWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKD 169 (277)
T ss_pred HhhcccCcEEEeeEeCCCccc---CEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEeccc
Confidence 355788999999999887643 3457777888877754322222 23333 456999999999999877
Q ss_pred ceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeE
Q 012788 250 DAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQI 329 (456)
Q Consensus 250 D~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI 329 (456)
|+.. ++||+|+|+++.+. .+| -..+|+++.||++.+.+ .--|++|+
T Consensus 170 ---AFWn------------~eNVtVyDS~i~GE-----YLg----W~SkNltliNC~I~g~Q----------pLCY~~~L 215 (277)
T PF12541_consen 170 ---AFWN------------CENVTVYDSVINGE-----YLG----WNSKNLTLINCTIEGTQ----------PLCYCDNL 215 (277)
T ss_pred ---cccc------------CCceEEEcceEeee-----EEE----EEcCCeEEEEeEEeccC----------ccEeecce
Confidence 4543 89999999999854 233 24689999999998763 13688999
Q ss_pred EEEceEecCcceeEE
Q 012788 330 VISDAELYNINVAFG 344 (456)
Q Consensus 330 ~~~ni~~~~~~~~i~ 344 (456)
+.+|++|.+...++.
T Consensus 216 ~l~nC~~~~tdlaFE 230 (277)
T PF12541_consen 216 VLENCTMIDTDLAFE 230 (277)
T ss_pred EEeCcEeecceeeee
Confidence 999999998766543
|
Proteins in this family are typically between 281 and 297 amino acids in length. |
| >PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.2e-07 Score=85.61 Aligned_cols=103 Identities=20% Similarity=0.304 Sum_probs=81.4
Q ss_pred EEEEeeccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCC
Q 012788 180 VEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWD 259 (456)
Q Consensus 180 i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~ 259 (456)
.-+++++|+.|+++.+... -.|+.|+||.|+|.++.+. |. ++.|+||+|.|++|..-
T Consensus 131 Yf~m~s~ni~id~l~~~Gn----Y~Fq~~kNvei~ns~l~sK------DA--FWn~eNVtVyDS~i~GE----------- 187 (277)
T PF12541_consen 131 YFFMNSENIYIDNLVLDGN----YSFQYCKNVEIHNSKLDSK------DA--FWNCENVTVYDSVINGE----------- 187 (277)
T ss_pred EeeeeccceEEeceEEeCC----EEeeceeeEEEEccEEecc------cc--cccCCceEEEcceEeee-----------
Confidence 5667788888888887543 4678999999999999974 33 57899999999999852
Q ss_pred ccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcceEEEEe
Q 012788 260 EYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRT 318 (456)
Q Consensus 260 ~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~iks 318 (456)
..+..++|+++.||++.+ ..|+. .+.|++++||+|.+++.++...+
T Consensus 188 ----YLgW~SkNltliNC~I~g--~QpLC-------Y~~~L~l~nC~~~~tdlaFEyS~ 233 (277)
T PF12541_consen 188 ----YLGWNSKNLTLINCTIEG--TQPLC-------YCDNLVLENCTMIDTDLAFEYSN 233 (277)
T ss_pred ----EEEEEcCCeEEEEeEEec--cCccE-------eecceEEeCcEeecceeeeeecc
Confidence 112349999999999997 46665 67999999999999887776633
|
Proteins in this family are typically between 281 and 297 amino acids in length. |
| >PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.3e-06 Score=76.85 Aligned_cols=122 Identities=25% Similarity=0.320 Sum_probs=86.5
Q ss_pred eeEEEEeeccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEec-CCceEecCC
Q 012788 178 HLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAM-GHDAISLKS 256 (456)
Q Consensus 178 ~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-gDD~iai~s 256 (456)
..|.+..+..++|++.+|.+ ...++.+....+++++++.+... ..|+.+..+.+++|++|.|.. ++.||.+..
T Consensus 24 ~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~-----~~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~ 97 (158)
T PF13229_consen 24 DGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDN-----GSGIYVSGSSNITIENNRIENNGDYGIYISN 97 (158)
T ss_dssp ECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES------SEEEECCS-CS-EEES-EEECSSS-SCE-TC
T ss_pred eEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEc-----cceEEEEecCCceecCcEEEcCCCccEEEec
Confidence 45888888889999999999 77789999999999999999974 278999999999999999988 444887764
Q ss_pred CCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCc-ceEEEEec
Q 012788 257 GWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSL-NGIEFRTT 319 (456)
Q Consensus 257 g~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~-~gi~iks~ 319 (456)
+..+++|++|++....+.|+.+.... -.+++|++|++.+.. .|+.+...
T Consensus 98 -----------~~~~~~i~~n~~~~~~~~gi~~~~~~---~~~~~i~~n~i~~~~~~gi~~~~~ 147 (158)
T PF13229_consen 98 -----------SSSNVTIENNTIHNNGGSGIYLEGGS---SPNVTIENNTISNNGGNGIYLISG 147 (158)
T ss_dssp -----------EECS-EEES-EEECCTTSSCEEEECC-----S-EEECEEEECESSEEEE-TT-
T ss_pred -----------cCCCEEEEeEEEEeCcceeEEEECCC---CCeEEEEEEEEEeCcceeEEEECC
Confidence 16889999999998755888876432 347899999999875 67777543
|
|
| >PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.7e-06 Score=77.00 Aligned_cols=175 Identities=16% Similarity=0.178 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhhccccCCCcEEEecCCceeee-----eeEeccceEEEeccCcEEEecCCCCCCCcCCCCCCCCcccccC
Q 012788 57 TLAFQNAIFYLKSFADKGGAQLYVPSGKWLTG-----SFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELP 131 (456)
Q Consensus 57 T~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g-----~l~L~s~~tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~ 131 (456)
-+-|++|++.| ..|.+|+|-+|+|... ||.|+++++|..+.... |.
T Consensus 15 ~~Ti~~A~~~a-----~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~k---------------------G~--- 65 (246)
T PF07602_consen 15 FKTITKALQAA-----QPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNK---------------------GQ--- 65 (246)
T ss_pred HHHHHHHHHhC-----CCCCEEEECCceeccccCCcccEEecCCeEEeecccCC---------------------Cc---
Confidence 35799999976 6788999999999642 57788877776531110 00
Q ss_pred CCcceeeEEEeeeeeEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEEeCCcceEEeecccce
Q 012788 132 GRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNV 211 (456)
Q Consensus 132 ~~~~~~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv 211 (456)
-..++.. +...+.|.| .+... ....+.+....+.+|++++|.|+..
T Consensus 66 ---~~il~~g-~~~~~~I~g-------~~~~~------------~~qn~tI~~~~~~~i~GvtItN~n~----------- 111 (246)
T PF07602_consen 66 ---IDILITG-GGTGPTISG-------GGPDL------------SGQNVTIILANNATISGVTITNPNI----------- 111 (246)
T ss_pred ---ceEEecC-CceEEeEec-------cCccc------------cceeEEEEecCCCEEEEEEEEcCCC-----------
Confidence 0001111 111123333 22100 0233555566777777877777610
Q ss_pred EEEEEEEECCCCCCCCceeeecCccCEEEEecEEec-CCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEec
Q 012788 212 HIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAM-GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFG 290 (456)
Q Consensus 212 ~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~ig 290 (456)
...-|+.+.++ +.+|+||+|.. ..++|.+... .......++.|+++.+... ..||++.
T Consensus 112 -------------~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~------~~~~~i~~~vI~GN~~~~~-~~Gi~i~ 170 (246)
T PF07602_consen 112 -------------ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGT------SANPGINGNVISGNSIYFN-KTGISIS 170 (246)
T ss_pred -------------CcceEEEEecC-CcEEEeeEEECCccccEEEEee------ecCCcccceEeecceEEec-CcCeEEE
Confidence 01224444333 55555555554 3444443221 0112367788888888876 7788886
Q ss_pred ccccCcEEeEEEEeEEEECCcceEEEE
Q 012788 291 SEMSGGISNVQVEKIHLYDSLNGIEFR 317 (456)
Q Consensus 291 s~~~~~v~nI~v~n~~~~~~~~gi~ik 317 (456)
.-..+ +. -.++|+.+++...||.+.
T Consensus 171 ~~~~~-~~-n~I~NN~I~~N~~Gi~~~ 195 (246)
T PF07602_consen 171 DNAAP-VE-NKIENNIIENNNIGIVAI 195 (246)
T ss_pred cccCC-cc-ceeeccEEEeCCcCeEee
Confidence 54333 33 355888888776687765
|
Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT). |
| >COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.4e-05 Score=74.51 Aligned_cols=159 Identities=20% Similarity=0.264 Sum_probs=109.2
Q ss_pred CCCcEEEecCCceeeeeeEeccceEEEeccCcEEEecCCCCCCCcCCCCCCCCcccccCCCcceeeEEEeeeeeEEEecc
Q 012788 73 KGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGD 152 (456)
Q Consensus 73 ~gg~~v~iP~G~Yl~g~l~L~s~~tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~ 152 (456)
.+|..+-+. |+| .|.+.+....+|+.++++++....... .+. -...++.++|
T Consensus 32 ~pgd~~~i~-g~~-~g~~vInr~l~l~ge~ga~l~g~g~G~------------------------~vt-v~aP~~~v~G- 83 (408)
T COG3420 32 KPGDYYGIS-GRY-AGNFVINRALTLRGENGAVLDGGGKGS------------------------YVT-VAAPDVIVEG- 83 (408)
T ss_pred CCCcEEEEe-eee-cccEEEccceeeccccccEEecCCccc------------------------EEE-EeCCCceeee-
Confidence 577888787 887 467778778888889999986543321 222 1345566666
Q ss_pred CceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCC---CCCCce
Q 012788 153 NGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPE---SPYTVG 229 (456)
Q Consensus 153 ~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~---~~n~DG 229 (456)
-++.+.|..- +......+.-...+.-.|+...++.. .+++.+..+.++.+++.+|....+ ....+|
T Consensus 84 -l~vr~sg~~l---------p~m~agI~v~~~at~A~Vr~N~l~~n-~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnG 152 (408)
T COG3420 84 -LTVRGSGRSL---------PAMDAGIFVGRTATGAVVRHNDLIGN-SFGIYLHGSADVRIEGNTIQGLADLRVAERGNG 152 (408)
T ss_pred -EEEecCCCCc---------ccccceEEeccCcccceEEccccccc-ceEEEEeccCceEEEeeEEeeccccchhhccCc
Confidence 3554444321 11112233334455566666666654 468999999999999999987544 345789
Q ss_pred eeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecC
Q 012788 230 IVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSS 282 (456)
Q Consensus 230 i~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~ 282 (456)
|+++++++++|....|+.+.|||..+. +++-.|+++.++..
T Consensus 153 I~vyNa~~a~V~~ndisy~rDgIy~~~------------S~~~~~~gnr~~~~ 193 (408)
T COG3420 153 IYVYNAPGALVVGNDISYGRDGIYSDT------------SQHNVFKGNRFRDL 193 (408)
T ss_pred eEEEcCCCcEEEcCccccccceEEEcc------------cccceecccchhhe
Confidence 999999999999999999999998887 66666777766643
|
|
| >PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.9e-06 Score=79.19 Aligned_cols=134 Identities=20% Similarity=0.183 Sum_probs=69.4
Q ss_pred EEEEeeccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCC
Q 012788 180 VEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWD 259 (456)
Q Consensus 180 i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~ 259 (456)
+.+..+++..|++.++.+.. .++.+..+++++|+++++... ..||++..+++++|+++.+.....||.+..
T Consensus 16 i~l~~~~~~~i~~n~i~~~~-~gi~~~~s~~~~I~~n~i~~~-----~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~--- 86 (236)
T PF05048_consen 16 IYLWNSSNNSIENNTISNSR-DGIYVENSDNNTISNNTISNN-----RYGIHLMGSSNNTIENNTISNNGYGIYLMG--- 86 (236)
T ss_pred EEEEeCCCCEEEcCEEEeCC-CEEEEEEcCCeEEEeeEEECC-----CeEEEEEccCCCEEEeEEEEccCCCEEEEc---
Confidence 45555555555555555443 344555556666666655542 455666555556666666655445555554
Q ss_pred ccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCc
Q 012788 260 EYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNI 339 (456)
Q Consensus 260 ~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~ 339 (456)
+.+.+|+++++... ..||.+. ...+.+|+++++.+...||.+... .+.++++.++.+.
T Consensus 87 ---------s~~~~I~~N~i~~n-~~GI~l~-----~s~~~~I~~N~i~~~~~GI~l~~s-------~~n~I~~N~i~~n 144 (236)
T PF05048_consen 87 ---------SSNNTISNNTISNN-GYGIYLY-----GSSNNTISNNTISNNGYGIYLSSS-------SNNTITGNTISNN 144 (236)
T ss_pred ---------CCCcEEECCEecCC-CceEEEe-----eCCceEEECcEEeCCCEEEEEEeC-------CCCEEECeEEeCC
Confidence 33335666666554 3355443 223355555555555555555432 3344444444443
Q ss_pred -ceeEE
Q 012788 340 -NVAFG 344 (456)
Q Consensus 340 -~~~i~ 344 (456)
..+|.
T Consensus 145 ~~~Gi~ 150 (236)
T PF05048_consen 145 TDYGIY 150 (236)
T ss_pred CccceE
Confidence 44544
|
To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme []. |
| >PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.3e-05 Score=72.16 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=38.7
Q ss_pred CCCceEEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCCce--eee-eeEeccceEEEec
Q 012788 36 PRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKW--LTG-SFNLTSHLTLFLE 101 (456)
Q Consensus 36 ~~~~~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Y--l~g-~l~L~s~~tL~l~ 101 (456)
+....+|+.||- ..|=-++|.+|+. .+.||++|+|-- .+. ++.++.+-||+++
T Consensus 30 ~~~~~vni~dy~-----~~dwiasfkqaf~--------e~qtvvvpagl~cenint~ifip~gktl~v~ 85 (464)
T PRK10123 30 PARQSVNINDYN-----PHDWIASFKQAFS--------EGQTVVVPAGLVCDNINTGIFIPPGKTLHIL 85 (464)
T ss_pred CCCceeehhhcC-----cccHHHHHHHHhc--------cCcEEEecCccEecccccceEeCCCCeEEEE
Confidence 467889999995 3456688998875 357999999953 222 5777777777765
|
|
| >PLN02480 Probable pectinesterase | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.3e-05 Score=74.34 Aligned_cols=131 Identities=12% Similarity=0.112 Sum_probs=72.4
Q ss_pred EeeccEEEEeEEEEeCCc---------ceEEe-ecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceE
Q 012788 183 ISSENVVVSNLTFLNAPA---------YNIHP-VYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAI 252 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~---------~~i~~-~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~i 252 (456)
...++++++||+|+|+.. -.+-+ ...+.+.|.||++... -|-+... ...-.++||+|+..=|-|
T Consensus 129 V~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~-----QDTLy~~-~gR~yf~~C~IeG~VDFI 202 (343)
T PLN02480 129 VEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYST-----HNTLFDY-KGRHYYHSCYIQGSIDFI 202 (343)
T ss_pred EECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecc-----cceeEeC-CCCEEEEeCEEEeeeeEE
Confidence 346789999999999831 12222 4577788888888763 2333322 345667888887643332
Q ss_pred ecCCCCCccccccCCCcccEEEEEEEEecCCC------CeeEecccccCcEEeEEEEeEEEECCcceEEEE-ecCCCCce
Q 012788 253 SLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSG------SSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFR-TTKGRGGY 325 (456)
Q Consensus 253 ai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~------~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~ik-s~~g~~g~ 325 (456)
-| .-...++||++..... ..|.-.+.....-....|.||++.+.. .+.+. .| +.
T Consensus 203 ---FG-----------~g~a~fe~C~i~s~~~~~~~~~G~ITA~~r~~~~~~GfvF~~C~i~g~g-~~yLGRPW----~~ 263 (343)
T PLN02480 203 ---FG-----------RGRSIFHNCEIFVIADRRVKIYGSITAHNRESEDNSGFVFIKGKVYGIG-EVYLGRAK----GA 263 (343)
T ss_pred ---cc-----------ceeEEEEccEEEEecCCCCCCceEEEcCCCCCCCCCEEEEECCEEcccC-ceeeecCC----CC
Confidence 12 3566777887764211 112222222223345777788776632 22222 22 23
Q ss_pred EEeEEEEceEecC
Q 012788 326 IRQIVISDAELYN 338 (456)
Q Consensus 326 v~nI~~~ni~~~~ 338 (456)
...+.|.|..|.+
T Consensus 264 ya~vVf~~t~l~~ 276 (343)
T PLN02480 264 YSRVIFAKTYLSK 276 (343)
T ss_pred cceEEEEecccCC
Confidence 4566666666654
|
|
| >PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-05 Score=76.67 Aligned_cols=115 Identities=25% Similarity=0.249 Sum_probs=99.9
Q ss_pred eEEEEeeccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCC
Q 012788 179 LVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGW 258 (456)
Q Consensus 179 ~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~ 258 (456)
.+.+..+.+++|++.++.+. ..++++..+++++|++..+... ..||.+..+.+.+|+++.|.....||.+..
T Consensus 37 gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~n-----~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-- 108 (236)
T PF05048_consen 37 GIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISNN-----GYGIYLMGSSNNTISNNTISNNGYGIYLYG-- 108 (236)
T ss_pred EEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEcc-----CCCEEEEcCCCcEEECCEecCCCceEEEee--
Confidence 46888999999999999998 7899999999999999999973 489999998888999999999777998876
Q ss_pred CccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECC-cceEEEE
Q 012788 259 DEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDS-LNGIEFR 317 (456)
Q Consensus 259 ~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~-~~gi~ik 317 (456)
+.+.+|+++++... ..||.+... .+.+|++++|.+. ..|+.+.
T Consensus 109 ----------s~~~~I~~N~i~~~-~~GI~l~~s-----~~n~I~~N~i~~n~~~Gi~~~ 152 (236)
T PF05048_consen 109 ----------SSNNTISNNTISNN-GYGIYLSSS-----SNNTITGNTISNNTDYGIYFL 152 (236)
T ss_pred ----------CCceEEECcEEeCC-CEEEEEEeC-----CCCEEECeEEeCCCccceEEe
Confidence 67889999999855 889998632 6889999999988 7898843
|
To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme []. |
| >PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.2e-06 Score=83.84 Aligned_cols=171 Identities=15% Similarity=0.225 Sum_probs=99.8
Q ss_pred EEeecccceEEEEEEEECCCCCCCCceeeecCcc----CEEEEecEEec----CCceEecCCCCCccccccCCCcccEEE
Q 012788 203 IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSD----NVCIEDCIIAM----GHDAISLKSGWDEYGIAYGRPTTDVHI 274 (456)
Q Consensus 203 i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~----nV~I~n~~i~~----gDD~iai~sg~~~~g~~~~~~s~ni~I 274 (456)
+....+++..+++++|.+++. -.+++.... +..|+|..+-. .-||+.+ .+|-+|
T Consensus 323 ~~~~g~q~~~~~GiTI~~pP~----~Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~l--------------y~nS~i 384 (582)
T PF03718_consen 323 ISANGGQTLTCEGITINDPPF----HSMDLYGNENDKFSMNISNYKQVGAWYFQTDGIEL--------------YPNSTI 384 (582)
T ss_dssp CS-SSSEEEEEES-EEE--SS-----SEEEESSSGGGEEEEEEEEEEE---CTT----B----------------TT-EE
T ss_pred hccCCcceEEEEeeEecCCCc----ceEEecCCccccccceeeceeeeeeEEeccCCccc--------------cCCCee
Confidence 345677899999999999863 336665433 47888887664 4566665 567788
Q ss_pred EEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcceEEEE-ecCCCCceEEeEEEEceEecCcc---------eeEE
Q 012788 275 RRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFR-TTKGRGGYIRQIVISDAELYNIN---------VAFG 344 (456)
Q Consensus 275 ~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~ik-s~~g~~g~v~nI~~~ni~~~~~~---------~~i~ 344 (456)
+||+++.. +++|.+- ..++.++||+++...+|--|. .|. ...++||+|+|+.+-..+ .+|.
T Consensus 385 ~dcF~h~n-DD~iKlY------hS~v~v~~~ViWk~~Ngpiiq~GW~--pr~isnv~veni~IIh~r~~~~~~~~n~~I~ 455 (582)
T PF03718_consen 385 RDCFIHVN-DDAIKLY------HSNVSVSNTVIWKNENGPIIQWGWT--PRNISNVSVENIDIIHNRWIWHNNYVNTAIL 455 (582)
T ss_dssp EEEEEEES-S-SEE--------STTEEEEEEEEEE-SSS-SEE--CS-----EEEEEEEEEEEEE---SSGGCTTT-ECE
T ss_pred eeeEEEec-Cchhhee------ecCcceeeeEEEecCCCCeEEeecc--ccccCceEEeeeEEEeeeeecccCCCCceeE
Confidence 99999987 9999764 368999999999887765454 243 567999999999986542 2344
Q ss_pred Ee-ccCCCCCCC-CCCCCCCCeEEEEEEEEEEeeccceeEEEEeeCCCCeeeEEEEeEEEE
Q 012788 345 AC-GNCGSHPDD-DFDPDALPAIDQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLS 403 (456)
Q Consensus 345 i~-~~y~~~~~~-~~~~~~~~~i~nIt~~nI~~~~~~~~~~~~g~~~~~~~~I~~~nv~i~ 403 (456)
-. .+|.+-+.. ..+|+. +|++++|+||+.++.- +..+.=.+-...+|+.++|+.+.
T Consensus 456 ~ss~~y~~~~s~~~adp~~--ti~~~~~~nv~~EG~~-~~l~ri~plqn~~nl~ikN~~~~ 513 (582)
T PF03718_consen 456 GSSPFYDDMASTKTADPST--TIRNMTFSNVRCEGMC-PCLFRIYPLQNYDNLVIKNVHFE 513 (582)
T ss_dssp EE--BTTS-SSS--BEEEE--EEEEEEEEEEEEECCE--ECEEE--SEEEEEEEEEEEEEC
T ss_pred ecccccccccCCCCCCccc--ceeeEEEEeEEEeccc-ceeEEEeecCCCcceEEEEeecc
Confidence 33 345221111 112222 7999999999999753 22232234456778888998887
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X. |
| >smart00656 Amb_all Amb_all domain | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.4e-05 Score=70.15 Aligned_cols=97 Identities=24% Similarity=0.276 Sum_probs=72.4
Q ss_pred eEEeecccceEEEEEEEECCCC--CCCCceeeecCccCEEEEecEEecC----------CceEecCCCCCccccccCCCc
Q 012788 202 NIHPVYCSNVHIQNISVHAPPE--SPYTVGIVPDSSDNVCIEDCIIAMG----------HDAISLKSGWDEYGIAYGRPT 269 (456)
Q Consensus 202 ~i~~~~~~nv~i~n~~i~~~~~--~~n~DGi~~~~s~nV~I~n~~i~~g----------DD~iai~sg~~~~g~~~~~~s 269 (456)
++.+..++||.|+|++|..... ..+.|+|.+..+++|.|++|.+..+ |..+.++.+ +
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~-----------s 101 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNG-----------S 101 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcc-----------c
Confidence 4555556788888888887533 2367999999999999999999986 333455554 8
Q ss_pred ccEEEEEEEEecCCCCeeEeccccc---CcEEeEEEEeEEEECC
Q 012788 270 TDVHIRRVLLQSSSGSSVAFGSEMS---GGISNVQVEKIHLYDS 310 (456)
Q Consensus 270 ~ni~I~n~~~~~~~~~gi~igs~~~---~~v~nI~v~n~~~~~~ 310 (456)
.+++|++|.|..- ..+.-+|+... ....+|++.++.+.++
T Consensus 102 ~~vTvs~~~f~~h-~~~~liG~~d~~~~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 102 TYVTISNNYFHNH-WKVMLLGHSDSDTDDGKMRVTIAHNYFGNL 144 (190)
T ss_pred ccEEEECceEecC-CEEEEEccCCCccccccceEEEECcEEcCc
Confidence 9999999999865 66778886432 2245799999999765
|
|
| >COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.5e-05 Score=70.84 Aligned_cols=63 Identities=21% Similarity=0.199 Sum_probs=36.3
Q ss_pred EEEeeeeeEEEecc--CceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEEeCC-----cceEEe-ecccc
Q 012788 139 INGYMLRDVVVTGD--NGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAP-----AYNIHP-VYCSN 210 (456)
Q Consensus 139 i~~~~~~ni~I~G~--~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~-----~~~i~~-~~~~n 210 (456)
+....+.|.+|.|. ++++.|- .+.+.+..||.|+|++|+..+ +..|.+ ....+
T Consensus 95 ~~iki~sNkTivG~g~~a~~~g~-------------------gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~n 155 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLVGG-------------------GLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHN 155 (345)
T ss_pred EEEeeccccEEEeeccccEEEec-------------------eEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeE
Confidence 34466788888886 1233322 366666777888888777665 233444 44445
Q ss_pred eEEEEEEEEC
Q 012788 211 VHIQNISVHA 220 (456)
Q Consensus 211 v~i~n~~i~~ 220 (456)
+.|+++++..
T Consensus 156 IWIDH~tf~~ 165 (345)
T COG3866 156 IWIDHNTFSG 165 (345)
T ss_pred EEEEeeEecc
Confidence 5555555544
|
|
| >COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.5e-05 Score=71.62 Aligned_cols=138 Identities=15% Similarity=0.122 Sum_probs=99.0
Q ss_pred EEEEeeccEEEEeEEEE-eCCcceEEeecccceEEEEEEEECCCC-CCCCceeee-cCccCEEEEecEEec---------
Q 012788 180 VEFISSENVVVSNLTFL-NAPAYNIHPVYCSNVHIQNISVHAPPE-SPYTVGIVP-DSSDNVCIEDCIIAM--------- 247 (456)
Q Consensus 180 i~~~~~~nv~I~~v~i~-ns~~~~i~~~~~~nv~i~n~~i~~~~~-~~n~DGi~~-~~s~nV~I~n~~i~~--------- 247 (456)
+.+..+.|.+|.|+--. ---.|++.+.+..||.|+|++|..... -++-|+|.+ ..++|++|++|++..
T Consensus 95 ~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h 174 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSH 174 (345)
T ss_pred EEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccC
Confidence 77777888888887521 112578888889999999999987542 234599999 789999999999986
Q ss_pred CCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEeccccc----CcEEeEEEEeEEEECCc-ceEEEEecCCC
Q 012788 248 GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMS----GGISNVQVEKIHLYDSL-NGIEFRTTKGR 322 (456)
Q Consensus 248 gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~----~~v~nI~v~n~~~~~~~-~gi~iks~~g~ 322 (456)
+|..+.++-+ +..|+|++|+|... +-++-+|+-.. ++-.+|++.+|.|.+.. ++-||.--
T Consensus 175 ~DGl~Dik~~-----------AnyITiS~n~fhdh-~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG--- 239 (345)
T COG3866 175 GDGLVDIKKD-----------ANYITISYNKFHDH-DKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFG--- 239 (345)
T ss_pred CCccEEeccC-----------CcEEEEEeeeeecC-CeeeeeccCCcccccCCceeEEEeccccccccccCCceEee---
Confidence 2444556554 89999999999976 67777777542 45678999999998863 33343210
Q ss_pred CceEEeEEEE
Q 012788 323 GGYIRQIVIS 332 (456)
Q Consensus 323 ~g~v~nI~~~ 332 (456)
.-+|.|-.|+
T Consensus 240 ~vHvyNNYy~ 249 (345)
T COG3866 240 MVHVYNNYYE 249 (345)
T ss_pred EEEEeccccc
Confidence 1244555555
|
|
| >PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.1e-05 Score=75.72 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHhhccccCCCcEEEecCCcee
Q 012788 56 NTLAFQNAIFYLKSFADKGGAQLYVPSGKWL 86 (456)
Q Consensus 56 dT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl 86 (456)
+.++||+||+.| .+|.+|+++.|+|.
T Consensus 3 s~~~lq~Ai~~a-----~pGD~I~L~~Gty~ 28 (425)
T PF14592_consen 3 SVAELQSAIDNA-----KPGDTIVLADGTYK 28 (425)
T ss_dssp SHHHHHHHHHH-------TT-EEEE-SEEEE
T ss_pred CHHHHHHHHHhC-----CCCCEEEECCceee
Confidence 578999999987 68999999999996
|
|
| >smart00656 Amb_all Amb_all domain | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0005 Score=63.14 Aligned_cols=128 Identities=18% Similarity=0.068 Sum_probs=87.8
Q ss_pred eEEEEeeccEEEEeEEEEeCCc------ceEEeecccceEEEEEEEECCCC----CCCCcee-eec-CccCEEEEecEEe
Q 012788 179 LVEFISSENVVVSNLTFLNAPA------YNIHPVYCSNVHIQNISVHAPPE----SPYTVGI-VPD-SSDNVCIEDCIIA 246 (456)
Q Consensus 179 ~i~~~~~~nv~I~~v~i~ns~~------~~i~~~~~~nv~i~n~~i~~~~~----~~n~DGi-~~~-~s~nV~I~n~~i~ 246 (456)
.|.+..++||.|++++|++... .++.+..+++|.|+.|++..... ....||. ++. .+.+|+|.+|.|.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 4777779999999999998643 58999999999999999998510 1114554 443 4789999999998
Q ss_pred cCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCc-ceEEE
Q 012788 247 MGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSL-NGIEF 316 (456)
Q Consensus 247 ~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~-~gi~i 316 (456)
..+-+.-+.++..... ....+|++.+|.+.....+.-.+.. + .+.+.|+.+.+.. .++.+
T Consensus 113 ~h~~~~liG~~d~~~~----~~~~~vT~h~N~~~~~~~R~P~~r~----g--~~hv~NN~~~n~~~~~~~~ 173 (190)
T smart00656 113 NHWKVMLLGHSDSDTD----DGKMRVTIAHNYFGNLRQRAPRVRF----G--YVHVYNNYYTGWTSYAIGG 173 (190)
T ss_pred cCCEEEEEccCCCccc----cccceEEEECcEEcCcccCCCcccC----C--EEEEEeeEEeCcccEeEec
Confidence 7666666665421100 0134799999999764344444431 2 5888899888764 34333
|
|
| >PLN02682 pectinesterase family protein | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.002 Score=64.58 Aligned_cols=134 Identities=13% Similarity=0.098 Sum_probs=74.1
Q ss_pred EEEeeccEEEEeEEEEeCCcc---------eE-EeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCc
Q 012788 181 EFISSENVVVSNLTFLNAPAY---------NI-HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHD 250 (456)
Q Consensus 181 ~~~~~~nv~I~~v~i~ns~~~---------~i-~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD 250 (456)
.....+++..+|++|+|+... .+ .....+...+.+|++...- |-+... ...-.++||+|+..=|
T Consensus 158 ~~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~Q-----DTLy~~-~gRqyf~~C~IeG~VD 231 (369)
T PLN02682 158 FAVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQ-----DTLYDH-LGRHYFKDCYIEGSVD 231 (369)
T ss_pred EEEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccc-----cceEEC-CCCEEEEeeEEccccc
Confidence 344577899999999997421 11 1235677788888887642 333222 2356778888876544
Q ss_pred eEecCCCCCccccccCCCcccEEEEEEEEecC-CC-CeeEecccc-cCcEEeEEEEeEEEECCcceEEEE-ecCCCCceE
Q 012788 251 AISLKSGWDEYGIAYGRPTTDVHIRRVLLQSS-SG-SSVAFGSEM-SGGISNVQVEKIHLYDSLNGIEFR-TTKGRGGYI 326 (456)
Q Consensus 251 ~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~-~~-~gi~igs~~-~~~v~nI~v~n~~~~~~~~gi~ik-s~~g~~g~v 326 (456)
=|- | .-...+++|++... .. ..|.-.+.. ...-....|.||++.+.. -+.+. .| +..
T Consensus 232 FIF---G-----------~g~a~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF~~C~itg~g-~~yLGRpW----~~y 292 (369)
T PLN02682 232 FIF---G-----------NGLSLYEGCHLHAIARNFGALTAQKRQSVLEDTGFSFVNCKVTGSG-ALYLGRAW----GTF 292 (369)
T ss_pred EEe---c-----------CceEEEEccEEEEecCCCeEEecCCCCCCCCCceEEEEeeEecCCC-ceEeecCC----CCc
Confidence 331 1 35667777877642 11 122222211 122346777888887642 22222 22 224
Q ss_pred EeEEEEceEecCc
Q 012788 327 RQIVISDAELYNI 339 (456)
Q Consensus 327 ~nI~~~ni~~~~~ 339 (456)
..+.|.|..|.+.
T Consensus 293 arvVf~~t~m~~~ 305 (369)
T PLN02682 293 SRVVFAYTYMDNI 305 (369)
T ss_pred ceEEEEeccCCCc
Confidence 5677777776653
|
|
| >PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00057 Score=63.87 Aligned_cols=124 Identities=19% Similarity=0.281 Sum_probs=81.0
Q ss_pred EEEEeEEEEeCCc------ceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCcc
Q 012788 188 VVVSNLTFLNAPA------YNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEY 261 (456)
Q Consensus 188 v~I~~v~i~ns~~------~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~ 261 (456)
++|++++|..... .++.+..++++.|+||++.+. +.+|+.+..+....+.+..... ++.+..+
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~----~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~---- 162 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENS----GGDGIYFNTGTDYRIIGSTHVS---GIFIDNG---- 162 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEEE---EEEEESC----
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEcc----CccEEEEEccccCcEeecccce---eeeeccc----
Confidence 4477777765432 357777788888888888764 3567776644444444433221 2222222
Q ss_pred ccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEEC-CcceEEEEecCCCCceEEeEEEEceEecCcc
Q 012788 262 GIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYD-SLNGIEFRTTKGRGGYIRQIVISDAELYNIN 340 (456)
Q Consensus 262 g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~-~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~ 340 (456)
+.++.+.|+.+... ..|+..+. ++++++||++.+ ...|+.+... ++++++|++++++.
T Consensus 163 -------~~~~~~~~~~~~~~-~~g~~~~~------~~~~i~n~~~~~~~~~gi~i~~~-------~~~~i~n~~i~~~~ 221 (225)
T PF12708_consen 163 -------SNNVIVNNCIFNGG-DNGIILGN------NNITISNNTFEGNCGNGINIEGG-------SNIIISNNTIENCD 221 (225)
T ss_dssp -------EEEEEEECEEEESS-SCSEECEE------EEEEEECEEEESSSSESEEEEEC-------SEEEEEEEEEESSS
T ss_pred -------eeEEEECCccccCC-CceeEeec------ceEEEEeEEECCccceeEEEECC-------eEEEEEeEEEECCc
Confidence 46777788888876 66644332 799999999998 6789988765 33888888888887
Q ss_pred eeE
Q 012788 341 VAF 343 (456)
Q Consensus 341 ~~i 343 (456)
.+|
T Consensus 222 ~g~ 224 (225)
T PF12708_consen 222 DGI 224 (225)
T ss_dssp EEE
T ss_pred cCc
Confidence 765
|
... |
| >PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00012 Score=67.83 Aligned_cols=96 Identities=25% Similarity=0.383 Sum_probs=63.6
Q ss_pred eEEee-cccceEEEEEEEECC-----------CCCCCCceeeecCccCEEEEecEEecC--------Cc-eEecCCCCCc
Q 012788 202 NIHPV-YCSNVHIQNISVHAP-----------PESPYTVGIVPDSSDNVCIEDCIIAMG--------HD-AISLKSGWDE 260 (456)
Q Consensus 202 ~i~~~-~~~nv~i~n~~i~~~-----------~~~~n~DGi~~~~s~nV~I~n~~i~~g--------DD-~iai~sg~~~ 260 (456)
++.+. .++||.|+|++|... ......|+|.+..+++|.|++|.+..+ .| .+.++.+
T Consensus 38 G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~--- 114 (200)
T PF00544_consen 38 GLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKG--- 114 (200)
T ss_dssp EEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESS---
T ss_pred eEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeC---
Confidence 44444 677777777777761 123457999999999999999999876 33 3566554
Q ss_pred cccccCCCcccEEEEEEEEecCCCCeeEeccc----ccCcEEeEEEEeEEEECC
Q 012788 261 YGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSE----MSGGISNVQVEKIHLYDS 310 (456)
Q Consensus 261 ~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~----~~~~v~nI~v~n~~~~~~ 310 (456)
+.+|+|++|.|... ..+.-+|+. ...+ .+|++.++.+.++
T Consensus 115 --------s~~vTiS~n~f~~~-~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 115 --------SDNVTISNNIFDNH-NKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp --------TEEEEEES-EEEEE-EETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred --------CceEEEEchhcccc-ccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 89999999999864 455556764 2234 8899999988765
|
2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A .... |
| >PLN02773 pectinesterase | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0052 Score=60.62 Aligned_cols=133 Identities=13% Similarity=0.111 Sum_probs=78.4
Q ss_pred EEEeeccEEEEeEEEEeCCcc----e-EEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecC
Q 012788 181 EFISSENVVVSNLTFLNAPAY----N-IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLK 255 (456)
Q Consensus 181 ~~~~~~nv~I~~v~i~ns~~~----~-i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~ 255 (456)
.+..++++..+||+|+|+..- . -.....+.+.+.+|++... -|-+-.. .....++||+|+..=|=|-
T Consensus 97 v~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~-----QDTL~~~-~gr~yf~~c~IeG~VDFIF-- 168 (317)
T PLN02773 97 VIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGW-----QDTLYLH-YGKQYLRDCYIEGSVDFIF-- 168 (317)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecc-----cceeEeC-CCCEEEEeeEEeecccEEe--
Confidence 444688999999999998421 1 1223567888888888874 3434332 2357788888887544442
Q ss_pred CCCCccccccCCCcccEEEEEEEEecCCCCee-Eecccc-cCcEEeEEEEeEEEECCcc--eEEEE-ecCCCCceEEeEE
Q 012788 256 SGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSV-AFGSEM-SGGISNVQVEKIHLYDSLN--GIEFR-TTKGRGGYIRQIV 330 (456)
Q Consensus 256 sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi-~igs~~-~~~v~nI~v~n~~~~~~~~--gi~ik-s~~g~~g~v~nI~ 330 (456)
| .-...+++|++... ..|. .-.+.. ...-....|.||++.+... -+.+. .| +.-..++
T Consensus 169 -G-----------~g~a~Fe~c~i~s~-~~g~ITA~~r~~~~~~~GfvF~~c~it~~~~~~~~yLGRpW----~~~a~vV 231 (317)
T PLN02773 169 -G-----------NSTALLEHCHIHCK-SAGFITAQSRKSSQESTGYVFLRCVITGNGGSGYMYLGRPW----GPFGRVV 231 (317)
T ss_pred -e-----------ccEEEEEeeEEEEc-cCcEEECCCCCCCCCCceEEEEccEEecCCCCcceeecCCC----CCCceEE
Confidence 2 35578888888753 3333 212111 1123467888888876532 12222 22 2245677
Q ss_pred EEceEecC
Q 012788 331 ISDAELYN 338 (456)
Q Consensus 331 ~~ni~~~~ 338 (456)
|.|..|.+
T Consensus 232 f~~t~l~~ 239 (317)
T PLN02773 232 FAYTYMDA 239 (317)
T ss_pred EEecccCC
Confidence 77777765
|
|
| >PLN02176 putative pectinesterase | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.012 Score=58.57 Aligned_cols=130 Identities=11% Similarity=0.125 Sum_probs=69.2
Q ss_pred eeccEEEEeEEEEeCCcc----------e-EEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceE
Q 012788 184 SSENVVVSNLTFLNAPAY----------N-IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAI 252 (456)
Q Consensus 184 ~~~nv~I~~v~i~ns~~~----------~-i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~i 252 (456)
.++++..+|++|+|.... . -.....+...+.+|++... -|-+... ...-.++||+|+..=|=|
T Consensus 120 ~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~-----QDTLy~~-~gRqyf~~CyIeG~VDFI 193 (340)
T PLN02176 120 YASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGF-----QDTLFDG-KGRHYYKRCVISGGIDFI 193 (340)
T ss_pred ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecc-----cceeEeC-CcCEEEEecEEEecccEE
Confidence 467888899999887321 1 1223467777778877763 2333332 345667788887654433
Q ss_pred ecCCCCCccccccCCCcccEEEEEEEEecCC-------C-CeeEecccc-cCcEEeEEEEeEEEECCcceEEEE-ecCCC
Q 012788 253 SLKSGWDEYGIAYGRPTTDVHIRRVLLQSSS-------G-SSVAFGSEM-SGGISNVQVEKIHLYDSLNGIEFR-TTKGR 322 (456)
Q Consensus 253 ai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~-------~-~gi~igs~~-~~~v~nI~v~n~~~~~~~~gi~ik-s~~g~ 322 (456)
- | .-...++||++..-. . .-|.-.+.. ...-....|.||++.+.. -+.+. .|
T Consensus 194 F---G-----------~a~a~Fe~C~I~s~~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~g-~~yLGRPW--- 255 (340)
T PLN02176 194 F---G-----------YAQSIFEGCTLKLTLGIYPPNEPYGTITAQGRPSPSDKGGFVFKDCTVTGVG-KALLGRAW--- 255 (340)
T ss_pred e---c-----------CceEEEeccEEEEecccCCCCCCcEEEEeCCCCCCCCCcEEEEECCEEccCc-ceeeecCC---
Confidence 2 1 345677777776310 0 112221111 122346777788777642 12221 22
Q ss_pred CceEEeEEEEceEecC
Q 012788 323 GGYIRQIVISDAELYN 338 (456)
Q Consensus 323 ~g~v~nI~~~ni~~~~ 338 (456)
+.-..+.|.|..|.+
T Consensus 256 -~~yarvVf~~t~m~~ 270 (340)
T PLN02176 256 -GSYARVIFYRSRFSD 270 (340)
T ss_pred -CCCceEEEEecCcCC
Confidence 223566666666665
|
|
| >PLN02497 probable pectinesterase | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0043 Score=61.49 Aligned_cols=131 Identities=12% Similarity=0.123 Sum_probs=70.1
Q ss_pred EeeccEEEEeEEEEeCCcc-----------e-EEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCc
Q 012788 183 ISSENVVVSNLTFLNAPAY-----------N-IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHD 250 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~-----------~-i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD 250 (456)
...+++..+|++|+|+... . -.....+...+.+|++.... |-+-. ....-.++||+|+..=|
T Consensus 112 v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~Q-----DTLy~-~~gRqyf~~C~IeG~VD 185 (331)
T PLN02497 112 TLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQ-----DTLWD-SDGRHYFKRCTIQGAVD 185 (331)
T ss_pred EecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccc-----cceee-CCCcEEEEeCEEEeccc
Confidence 3567889999999987431 1 11234677778888887642 33322 23356777888876444
Q ss_pred eEecCCCCCccccccCCCcccEEEEEEEEecCCC-------CeeEeccc-ccCcEEeEEEEeEEEECCcceEEEE-ecCC
Q 012788 251 AISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSG-------SSVAFGSE-MSGGISNVQVEKIHLYDSLNGIEFR-TTKG 321 (456)
Q Consensus 251 ~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~-------~gi~igs~-~~~~v~nI~v~n~~~~~~~~gi~ik-s~~g 321 (456)
-| -| .-...++||++..-.. .-|.-.+. .........|.||++.+.. -+.+. .|
T Consensus 186 FI---FG-----------~g~a~Fe~C~I~s~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~g-~~yLGRPW-- 248 (331)
T PLN02497 186 FI---FG-----------SGQSIYESCVIQVLGGQLEPGLAGFITAQGRTNPYDANGFVFKNCLVYGTG-SAYLGRPW-- 248 (331)
T ss_pred EE---cc-----------CceEEEEccEEEEecCcCCCCCceEEEecCCCCCCCCceEEEEccEEccCC-CEEEeCCC--
Confidence 33 11 3456777777764200 11221111 1122345677777777642 22222 22
Q ss_pred CCceEEeEEEEceEecC
Q 012788 322 RGGYIRQIVISDAELYN 338 (456)
Q Consensus 322 ~~g~v~nI~~~ni~~~~ 338 (456)
+.-..+.|.+..|.+
T Consensus 249 --~~ysrvvf~~t~m~~ 263 (331)
T PLN02497 249 --RGYSRVLFYNSNLTD 263 (331)
T ss_pred --CCCceEEEEecccCC
Confidence 123566666666665
|
|
| >PLN02304 probable pectinesterase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.012 Score=59.24 Aligned_cols=130 Identities=12% Similarity=0.117 Sum_probs=68.9
Q ss_pred EeeccEEEEeEEEEeCCcc---------e-EEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceE
Q 012788 183 ISSENVVVSNLTFLNAPAY---------N-IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAI 252 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~---------~-i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~i 252 (456)
...+++..+|++|+|+... . -.....+...+.+|++.... |-+... ...-.++||+|+..=|-|
T Consensus 159 v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~Q-----DTLy~~-~gR~Yf~~CyIeG~VDFI 232 (379)
T PLN02304 159 VFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQ-----DTLHDD-RGRHYFKDCYIQGSIDFI 232 (379)
T ss_pred EECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEeccc-----ceeEeC-CCCEEEEeeEEcccccEE
Confidence 3467888999999987421 1 12235677778888877642 333322 234667788887644433
Q ss_pred ecCCCCCccccccCCCcccEEEEEEEEecCCCC-----------eeEeccc-ccCcEEeEEEEeEEEECCcceEEEE-ec
Q 012788 253 SLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGS-----------SVAFGSE-MSGGISNVQVEKIHLYDSLNGIEFR-TT 319 (456)
Q Consensus 253 ai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~-----------gi~igs~-~~~~v~nI~v~n~~~~~~~~gi~ik-s~ 319 (456)
- | .-...++||++... .. .|.-.+. ....-....|.||++.+.. -+.+. .|
T Consensus 233 F---G-----------~g~A~Fe~C~I~s~-~~~~~~g~~~~~G~ITA~~Rt~~~~~~GfvF~~C~itg~g-~vyLGRPW 296 (379)
T PLN02304 233 F---G-----------DARSLYENCRLISM-ANPVPPGSKSINGAVTAHGRTSKDENTGFSFVNCTIGGTG-RIWLGRAW 296 (379)
T ss_pred e---c-----------cceEEEEccEEEEe-cCCcccccccCceEEEecCCCCCCCCceEEEECCEEccCc-ceeecCCC
Confidence 1 1 34556777777642 11 1121111 1122345677777776532 12221 22
Q ss_pred CCCCceEEeEEEEceEecC
Q 012788 320 KGRGGYIRQIVISDAELYN 338 (456)
Q Consensus 320 ~g~~g~v~nI~~~ni~~~~ 338 (456)
.--..+.|.+..|.+
T Consensus 297 ----~pysrvVf~~t~m~~ 311 (379)
T PLN02304 297 ----RPYSRVVFAYTSMTD 311 (379)
T ss_pred ----CCcceEEEEecccCC
Confidence 223566666666655
|
|
| >PRK10531 acyl-CoA thioesterase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.014 Score=59.53 Aligned_cols=117 Identities=13% Similarity=0.141 Sum_probs=63.2
Q ss_pred EEEEeeccEEEEeEEEEeCCcc--------e-EEeecccceEEEEEEEECCCCCCCC------ceeeecCccCEEEEecE
Q 012788 180 VEFISSENVVVSNLTFLNAPAY--------N-IHPVYCSNVHIQNISVHAPPESPYT------VGIVPDSSDNVCIEDCI 244 (456)
Q Consensus 180 i~~~~~~nv~I~~v~i~ns~~~--------~-i~~~~~~nv~i~n~~i~~~~~~~n~------DGi~~~~s~nV~I~n~~ 244 (456)
......+++..+||+|+|+... . -.....+.+.+.+|+|...-+-.-. .+...+......++||+
T Consensus 200 Tv~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~Cy 279 (422)
T PRK10531 200 VFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSY 279 (422)
T ss_pred EEEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCE
Confidence 4445788999999999998532 1 1224567778888888764321111 01111122356778888
Q ss_pred EecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCC----CeeEe-cccccCcEEeEEEEeEEEECC
Q 012788 245 IAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSG----SSVAF-GSEMSGGISNVQVEKIHLYDS 310 (456)
Q Consensus 245 i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~----~gi~i-gs~~~~~v~nI~v~n~~~~~~ 310 (456)
|+..=|=|- | .-...++||++..-.. .|.-. .+.....-....|.||++.+.
T Consensus 280 IeG~VDFIF---G-----------~g~AvFenC~I~s~~~~~~~~g~ITA~~t~~~~~~GfvF~nCrit~~ 336 (422)
T PRK10531 280 IEGDVDFVF---G-----------RGAVVFDNTEFRVVNSRTQQEAYVFAPATLPNIYYGFLAINSRFNAS 336 (422)
T ss_pred EeecccEEc---c-----------CceEEEEcCEEEEecCCCCCceEEEecCCCCCCCCEEEEECCEEecC
Confidence 876444331 2 3566677777764201 11111 111112334577777877764
|
|
| >PLN02634 probable pectinesterase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.037 Score=55.37 Aligned_cols=130 Identities=12% Similarity=0.105 Sum_probs=71.7
Q ss_pred eeccEEEEeEEEEeCCcc---------e-EEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEe
Q 012788 184 SSENVVVSNLTFLNAPAY---------N-IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAIS 253 (456)
Q Consensus 184 ~~~nv~I~~v~i~ns~~~---------~-i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~ia 253 (456)
..+++..+|++|+|+... . -.....+...+.+|++... -|-+-.. ...-.++||+|+..=|=|-
T Consensus 147 ~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~-----QDTL~~~-~gR~yf~~CyIeG~VDFIF 220 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGA-----QDTLCDD-AGRHYFKECYIEGSIDFIF 220 (359)
T ss_pred ECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecc-----cceeeeC-CCCEEEEeeEEcccccEEc
Confidence 467889999999987421 1 1123467788888888763 3333322 3456778888876444331
Q ss_pred cCCCCCccccccCCCcccEEEEEEEEecCCC--CeeEeccc-ccCcEEeEEEEeEEEECCcceEEEE-ecCCCCceEEeE
Q 012788 254 LKSGWDEYGIAYGRPTTDVHIRRVLLQSSSG--SSVAFGSE-MSGGISNVQVEKIHLYDSLNGIEFR-TTKGRGGYIRQI 329 (456)
Q Consensus 254 i~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~--~gi~igs~-~~~~v~nI~v~n~~~~~~~~gi~ik-s~~g~~g~v~nI 329 (456)
| .-...++||++..... .-|.-.+. ....-....|.||++.+.. -+.+. .| +.-..+
T Consensus 221 ---G-----------~g~a~Fe~C~I~s~~~~~g~ITA~~R~~~~~~~GfvF~~C~vtg~g-~~yLGRPW----~~yarv 281 (359)
T PLN02634 221 ---G-----------NGRSMYKDCELHSIASRFGSIAAHGRTCPEEKTGFAFVGCRVTGTG-PLYVGRAM----GQYSRI 281 (359)
T ss_pred ---C-----------CceEEEeccEEEEecCCCcEEEeCCCCCCCCCcEEEEEcCEEcCCc-ceEecCCC----CCcceE
Confidence 2 3455677887764211 12222221 1123346778888887642 12221 22 234567
Q ss_pred EEEceEecC
Q 012788 330 VISDAELYN 338 (456)
Q Consensus 330 ~~~ni~~~~ 338 (456)
.|.+..|.+
T Consensus 282 Vf~~t~l~~ 290 (359)
T PLN02634 282 VYAYTYFDA 290 (359)
T ss_pred EEEecccCC
Confidence 777777665
|
|
| >PLN02665 pectinesterase family protein | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.018 Score=57.95 Aligned_cols=134 Identities=13% Similarity=0.107 Sum_probs=81.6
Q ss_pred EEEeeccEEEEeEEEEeCCc---------ce-EEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCc
Q 012788 181 EFISSENVVVSNLTFLNAPA---------YN-IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHD 250 (456)
Q Consensus 181 ~~~~~~nv~I~~v~i~ns~~---------~~-i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD 250 (456)
....++++..+|++|+|+.. -. -.....+...+.||++... -|-+... ...-.++||+|+..=|
T Consensus 149 v~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~-----QDTL~~~-~gr~yf~~CyIeG~VD 222 (366)
T PLN02665 149 LIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGF-----QDTLCDD-KGRHFFKDCYIEGTVD 222 (366)
T ss_pred EEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccc-----cceeEeC-CCCEEEEeeEEeeccc
Confidence 34567889999999999642 11 1124568888999999874 3434332 3456788999987545
Q ss_pred eEecCCCCCccccccCCCcccEEEEEEEEecCCCCe----eEecccc-cCcEEeEEEEeEEEECCcceEEEE-ecCCCCc
Q 012788 251 AISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSS----VAFGSEM-SGGISNVQVEKIHLYDSLNGIEFR-TTKGRGG 324 (456)
Q Consensus 251 ~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~g----i~igs~~-~~~v~nI~v~n~~~~~~~~gi~ik-s~~g~~g 324 (456)
=|- | .-...+++|++... ..+ |.-.+.. ...-....|.||++.+....+.+. .| +
T Consensus 223 FIF---G-----------~g~a~fe~C~i~s~-~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~~~~yLGRpW----~ 283 (366)
T PLN02665 223 FIF---G-----------SGKSLYLNTELHVV-GDGGLRVITAQARNSEAEDSGFSFVHCKVTGTGTGAYLGRAW----M 283 (366)
T ss_pred eec---c-----------ccceeeEccEEEEe-cCCCcEEEEcCCCCCCCCCceEEEEeeEEecCCCceeecCCC----C
Confidence 432 2 35668888888753 332 2222211 123346789999998764233332 23 2
Q ss_pred eEEeEEEEceEecCc
Q 012788 325 YIRQIVISDAELYNI 339 (456)
Q Consensus 325 ~v~nI~~~ni~~~~~ 339 (456)
.-..+.|.+..|.+.
T Consensus 284 ~ysrvVf~~t~m~~~ 298 (366)
T PLN02665 284 SRPRVVFAYTEMSSV 298 (366)
T ss_pred CcceEEEEccccCCe
Confidence 345788888887763
|
|
| >PLN02432 putative pectinesterase | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.036 Score=54.12 Aligned_cols=131 Identities=13% Similarity=0.090 Sum_probs=69.2
Q ss_pred EeeccEEEEeEEEEeCCcc----eEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCC
Q 012788 183 ISSENVVVSNLTFLNAPAY----NIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGW 258 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~----~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~ 258 (456)
...+++.++||+|+|...- --.....+...+.+|++... -|-+-.. ...-.++||+|+..=|-|- |
T Consensus 91 v~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~-----QDTLy~~-~gr~yf~~c~I~G~VDFIF---G- 160 (293)
T PLN02432 91 VLASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSY-----QDTLLDD-TGRHYYRNCYIEGATDFIC---G- 160 (293)
T ss_pred EECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEecc-----cceeEEC-CCCEEEEeCEEEecccEEe---c-
Confidence 3467899999999997421 11223467777777777763 2333322 2345677787776544332 1
Q ss_pred CccccccCCCcccEEEEEEEEecCC--CCeeEecccc-cCcEEeEEEEeEEEECCcceEEEE-ecCCCCceEEeEEEEce
Q 012788 259 DEYGIAYGRPTTDVHIRRVLLQSSS--GSSVAFGSEM-SGGISNVQVEKIHLYDSLNGIEFR-TTKGRGGYIRQIVISDA 334 (456)
Q Consensus 259 ~~~g~~~~~~s~ni~I~n~~~~~~~--~~gi~igs~~-~~~v~nI~v~n~~~~~~~~gi~ik-s~~g~~g~v~nI~~~ni 334 (456)
.-...+++|++.... ...|.-.+.. ...-....|.||++.+.. .+.+. .| +.-..+.|.|.
T Consensus 161 ----------~g~a~Fe~c~i~s~~~~~g~itA~~r~~~~~~~Gfvf~~c~itg~g-~~yLGRpW----~~~srvvf~~t 225 (293)
T PLN02432 161 ----------NAASLFEKCHLHSLSPNNGAITAQQRTSASENTGFTFLGCKLTGAG-TTYLGRPW----GPYSRVVFALS 225 (293)
T ss_pred ----------CceEEEEeeEEEEecCCCCeEEecCCCCCCCCceEEEEeeEEcccc-hhhccCCC----CCccEEEEEec
Confidence 345677777776420 1222222211 122335677777776532 11111 12 22356666666
Q ss_pred EecC
Q 012788 335 ELYN 338 (456)
Q Consensus 335 ~~~~ 338 (456)
.|.+
T Consensus 226 ~l~~ 229 (293)
T PLN02432 226 YMSS 229 (293)
T ss_pred ccCC
Confidence 6654
|
|
| >PLN02170 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.023 Score=59.62 Aligned_cols=134 Identities=10% Similarity=0.054 Sum_probs=76.2
Q ss_pred EEEEeeccEEEEeEEEEeCCcc----e-EEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEec
Q 012788 180 VEFISSENVVVSNLTFLNAPAY----N-IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISL 254 (456)
Q Consensus 180 i~~~~~~nv~I~~v~i~ns~~~----~-i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai 254 (456)
-.....+++..+|++|+|+..- . -.....+...+.+|++.... |-+... +..-..++|+|...=|-|
T Consensus 307 Tv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQ-----DTLy~~-~~Rqyy~~C~I~GtVDFI-- 378 (529)
T PLN02170 307 TVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQ-----DSLYTH-SKRQFYRETDITGTVDFI-- 378 (529)
T ss_pred EEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccC-----CcceeC-CCCEEEEeeEEcccccee--
Confidence 3444577899999999997431 1 12245778888888888743 334333 334577888888644433
Q ss_pred CCCCCccccccCCCcccEEEEEEEEecCCC----CeeEeccc-ccCcEEeEEEEeEEEECCcceEEEE-ecCCCCceEEe
Q 012788 255 KSGWDEYGIAYGRPTTDVHIRRVLLQSSSG----SSVAFGSE-MSGGISNVQVEKIHLYDSLNGIEFR-TTKGRGGYIRQ 328 (456)
Q Consensus 255 ~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~----~gi~igs~-~~~~v~nI~v~n~~~~~~~~gi~ik-s~~g~~g~v~n 328 (456)
-| .-...++||.+..... .-|.-.+. ....-..+.|.||++.+.. -..++ .| ..-..
T Consensus 379 -FG-----------~a~avFq~C~I~~~~~~~~~g~ITAq~R~~~~~~~Gfvf~~C~it~~~-~~yLGRPW----~~ysr 441 (529)
T PLN02170 379 -FG-----------NSAVVFQSCNIAARKPSGDRNYVTAQGRSDPNQNTGISIHNCRITAES-MTYLGRPW----KEYSR 441 (529)
T ss_pred -cc-----------cceEEEeccEEEEecCCCCceEEEecCCCCCCCCceEEEEeeEEecCC-ceeeeCCC----CCCce
Confidence 12 3567788888764211 11221111 1123456788888887753 22222 22 22356
Q ss_pred EEEEceEecC
Q 012788 329 IVISDAELYN 338 (456)
Q Consensus 329 I~~~ni~~~~ 338 (456)
+.|.+..|.+
T Consensus 442 vVf~~t~l~~ 451 (529)
T PLN02170 442 TVVMQSFIDG 451 (529)
T ss_pred EEEEecccCC
Confidence 6777766665
|
|
| >PLN02671 pectinesterase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.045 Score=54.86 Aligned_cols=132 Identities=13% Similarity=0.124 Sum_probs=70.0
Q ss_pred EEeeccEEEEeEEEEeCCcc--------e-EEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceE
Q 012788 182 FISSENVVVSNLTFLNAPAY--------N-IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAI 252 (456)
Q Consensus 182 ~~~~~nv~I~~v~i~ns~~~--------~-i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~i 252 (456)
....+++..+|++|+|.... . -.....+.+.+.+|++.... |-+... ...-.++||+|+..=|=|
T Consensus 150 ~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~Q-----DTLy~~-~gR~yf~~CyIeG~VDFI 223 (359)
T PLN02671 150 TIESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQ-----DTLLDE-TGSHYFYQCYIQGSVDFI 223 (359)
T ss_pred EEECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEeccc-----cccEeC-CCcEEEEecEEEEeccEE
Confidence 34567888889999887210 1 11234677778888887632 333222 234567788877644433
Q ss_pred ecCCCCCccccccCCCcccEEEEEEEEecCC--CCeeEeccc-ccCcEEeEEEEeEEEECCcceEEEE-ecCCCCceEEe
Q 012788 253 SLKSGWDEYGIAYGRPTTDVHIRRVLLQSSS--GSSVAFGSE-MSGGISNVQVEKIHLYDSLNGIEFR-TTKGRGGYIRQ 328 (456)
Q Consensus 253 ai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~--~~gi~igs~-~~~~v~nI~v~n~~~~~~~~gi~ik-s~~g~~g~v~n 328 (456)
- | .-...++||++.... ...|.-.+. ....-....|.||++.+.. .+.+. .|. .-..
T Consensus 224 F---G-----------~g~A~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF~~C~itg~g-~vyLGRPW~----~yar 284 (359)
T PLN02671 224 F---G-----------NAKSLYQDCVIQSTAKRSGAIAAHHRDSPTEDTGFSFVNCVINGTG-KIYLGRAWG----NYSR 284 (359)
T ss_pred e---c-----------ceeEEEeccEEEEecCCCeEEEeeccCCCCCCccEEEEccEEccCc-cEEEeCCCC----CCce
Confidence 2 1 345677777776420 112222221 1122345677777776532 22232 231 2356
Q ss_pred EEEEceEecC
Q 012788 329 IVISDAELYN 338 (456)
Q Consensus 329 I~~~ni~~~~ 338 (456)
+.|.|..|.+
T Consensus 285 vVf~~t~m~~ 294 (359)
T PLN02671 285 TVYSNCFIAD 294 (359)
T ss_pred EEEEecccCC
Confidence 6666666665
|
|
| >PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0049 Score=60.63 Aligned_cols=132 Identities=11% Similarity=0.156 Sum_probs=72.9
Q ss_pred EeeccEEEEeEEEEeCCcc------eEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCC
Q 012788 183 ISSENVVVSNLTFLNAPAY------NIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKS 256 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~------~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s 256 (456)
...+++.+++++|+|+... .+. ...+.+.+.+|++... -|-+... ..+..++||+|+..-|-|-
T Consensus 84 v~a~~f~~~nit~~Nt~g~~~~qAvAl~-~~~d~~~f~~c~~~g~-----QDTL~~~-~~r~y~~~c~IeG~vDFIf--- 153 (298)
T PF01095_consen 84 VNADDFTAENITFENTAGPSGGQAVALR-VSGDRAAFYNCRFLGY-----QDTLYAN-GGRQYFKNCYIEGNVDFIF--- 153 (298)
T ss_dssp E-STT-EEEEEEEEEHCSGSG----SEE-ET-TSEEEEEEEEE-S-----TT-EEE--SSEEEEES-EEEESEEEEE---
T ss_pred ccccceeeeeeEEecCCCCcccceeeee-ecCCcEEEEEeEEccc-----cceeeec-cceeEEEeeEEEecCcEEE---
Confidence 3578999999999996422 233 3567889999999874 4555543 3457889999998666553
Q ss_pred CCCccccccCCCcccEEEEEEEEecCCC----Ce-eEeccc-ccCcEEeEEEEeEEEECCcc--------eEEEE-ecCC
Q 012788 257 GWDEYGIAYGRPTTDVHIRRVLLQSSSG----SS-VAFGSE-MSGGISNVQVEKIHLYDSLN--------GIEFR-TTKG 321 (456)
Q Consensus 257 g~~~~g~~~~~~s~ni~I~n~~~~~~~~----~g-i~igs~-~~~~v~nI~v~n~~~~~~~~--------gi~ik-s~~g 321 (456)
| .....++||++..... .| |.-.+. ....-...+|.||++..... ...+. .|
T Consensus 154 G-----------~~~a~f~~c~i~~~~~~~~~~~~ItA~~r~~~~~~~G~vF~~c~i~~~~~~~~~~~~~~~yLGRpW-- 220 (298)
T PF01095_consen 154 G-----------NGTAVFENCTIHSRRPGGGQGGYITAQGRTSPSQKSGFVFDNCTITGDSGVSPSYSDGSVYLGRPW-- 220 (298)
T ss_dssp E-----------SSEEEEES-EEEE--SSTSSTEEEEEE---CTTSS-EEEEES-EEEESTTTCGGCCCSTEEEE--S--
T ss_pred C-----------CeeEEeeeeEEEEeccccccceeEEeCCccccCCCeEEEEEEeEEecCccccccccceeEEecCcc--
Confidence 1 3456788888875311 11 222221 12345678999999986531 22232 22
Q ss_pred CCceEEeEEEEceEecCc
Q 012788 322 RGGYIRQIVISDAELYNI 339 (456)
Q Consensus 322 ~~g~v~nI~~~ni~~~~~ 339 (456)
+.-..+.|.|..|.+.
T Consensus 221 --~~~s~vvf~~t~m~~~ 236 (298)
T PF01095_consen 221 --GPYSRVVFINTYMDDH 236 (298)
T ss_dssp --SEETEEEEES-EE-TT
T ss_pred --cceeeEEEEccccCCe
Confidence 2345788888888874
|
1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A .... |
| >PLN02201 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.091 Score=55.37 Aligned_cols=138 Identities=9% Similarity=0.090 Sum_probs=78.5
Q ss_pred EEeeccEEEEeEEEEeCCcc----eE-EeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCC
Q 012788 182 FISSENVVVSNLTFLNAPAY----NI-HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKS 256 (456)
Q Consensus 182 ~~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s 256 (456)
....+++..+|++|+|+..- .+ .....+...+.+|++... -|-+.... ..-..+||+|+..=|-| -
T Consensus 289 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~-----QDTLy~~~-~Rqyy~~C~I~GtVDFI---F 359 (520)
T PLN02201 289 AVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGY-----QDTLYTHT-MRQFYRECRITGTVDFI---F 359 (520)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeecc-----CCeeEeCC-CCEEEEeeEEeecccEE---e
Confidence 34577899999999997431 11 224567888888888874 34444433 34567888888754433 1
Q ss_pred CCCccccccCCCcccEEEEEEEEecCC-----CCeeEeccc-ccCcEEeEEEEeEEEECCcceEE----EEecCCCC-ce
Q 012788 257 GWDEYGIAYGRPTTDVHIRRVLLQSSS-----GSSVAFGSE-MSGGISNVQVEKIHLYDSLNGIE----FRTTKGRG-GY 325 (456)
Q Consensus 257 g~~~~g~~~~~~s~ni~I~n~~~~~~~-----~~gi~igs~-~~~~v~nI~v~n~~~~~~~~gi~----iks~~g~~-g~ 325 (456)
| .-...++||++..-. ...|.-.+. ....-....|.||++.+...... .++.=|+. +.
T Consensus 360 G-----------~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~C~it~~~~~~~~~~~~~~yLGRPW~~ 428 (520)
T PLN02201 360 G-----------DATAVFQNCQILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFSNISADTDLLPYLNTTATYLGRPWKL 428 (520)
T ss_pred c-----------CceEEEEccEEEEecCCCCCCceEEecCCCCCCCCcEEEEEeeEEecCccccccccccceEeecCCCC
Confidence 2 456778888887420 122332221 11234568888888876432111 11111221 33
Q ss_pred EEeEEEEceEecCc
Q 012788 326 IRQIVISDAELYNI 339 (456)
Q Consensus 326 v~nI~~~ni~~~~~ 339 (456)
-+.+.|-+..|.+.
T Consensus 429 ysrvv~~~t~l~~~ 442 (520)
T PLN02201 429 YSRTVFMQNYMSDA 442 (520)
T ss_pred CceEEEEecCcCCe
Confidence 46677777777663
|
|
| >PLN02933 Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.1 Score=55.06 Aligned_cols=139 Identities=12% Similarity=0.105 Sum_probs=78.6
Q ss_pred EEEeeccEEEEeEEEEeCCcc----eEE-eecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecC
Q 012788 181 EFISSENVVVSNLTFLNAPAY----NIH-PVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLK 255 (456)
Q Consensus 181 ~~~~~~nv~I~~v~i~ns~~~----~i~-~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~ 255 (456)
.....+++..+|++|+|.... .+- -...+...+.+|+|...- |-+... +..-..++|+|+..=|-|
T Consensus 300 ~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~Q-----DTLy~~-~~Rqyy~~C~IeGtVDFI--- 370 (530)
T PLN02933 300 VGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQ-----DTLYVH-SAKQFYRECDIYGTIDFI--- 370 (530)
T ss_pred EEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecc-----cccccC-CCceEEEeeEEeccccee---
Confidence 344577899999999997432 121 245788888899888743 334333 234578889888643433
Q ss_pred CCCCccccccCCCcccEEEEEEEEecCC-----CCeeEecccc-cCcEEeEEEEeEEEECCcceEEE----EecCCCC-c
Q 012788 256 SGWDEYGIAYGRPTTDVHIRRVLLQSSS-----GSSVAFGSEM-SGGISNVQVEKIHLYDSLNGIEF----RTTKGRG-G 324 (456)
Q Consensus 256 sg~~~~g~~~~~~s~ni~I~n~~~~~~~-----~~gi~igs~~-~~~v~nI~v~n~~~~~~~~gi~i----ks~~g~~-g 324 (456)
-| .-...++||++..-. ...|.-.+.. ...-..+.|.||++.+....... ++.=|+. +
T Consensus 371 FG-----------~a~avFq~C~i~~~~~~~~~~~~iTAq~r~~~~~~tGfvf~~C~it~~~~~~~~~~~~~~yLGRPW~ 439 (530)
T PLN02933 371 FG-----------NAAVVFQNCSLYARKPNPNHKIAFTAQSRNQSDQPTGISIISSRILAAPDLIPVKENFKAYLGRPWR 439 (530)
T ss_pred cc-----------CceEEEeccEEEEeccCCCCceEEEecCCCCCCCCceEEEEeeEEecCCcccccccccceEeccCCC
Confidence 22 355778888886421 1122222221 12345688888888864321111 1111221 2
Q ss_pred eEEeEEEEceEecCc
Q 012788 325 YIRQIVISDAELYNI 339 (456)
Q Consensus 325 ~v~nI~~~ni~~~~~ 339 (456)
.-+.+.|.+..|.+.
T Consensus 440 ~ysrvVf~~s~l~~~ 454 (530)
T PLN02933 440 KYSRTVIIKSFIDDL 454 (530)
T ss_pred CCceEEEEecccCCe
Confidence 346777777777653
|
|
| >PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.012 Score=54.53 Aligned_cols=128 Identities=25% Similarity=0.230 Sum_probs=77.0
Q ss_pred EEEE-eeccEEEEeEEEEe---------------CCcceEEeecccceEEEEEEEECCCC---CCCCce-eeec-CccCE
Q 012788 180 VEFI-SSENVVVSNLTFLN---------------APAYNIHPVYCSNVHIQNISVHAPPE---SPYTVG-IVPD-SSDNV 238 (456)
Q Consensus 180 i~~~-~~~nv~I~~v~i~n---------------s~~~~i~~~~~~nv~i~n~~i~~~~~---~~n~DG-i~~~-~s~nV 238 (456)
+.+. .++||.|++++|++ .....+.+..+++|.|+.|++..... ....|| +++. .+++|
T Consensus 39 ~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~v 118 (200)
T PF00544_consen 39 LRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNV 118 (200)
T ss_dssp EEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEE
T ss_pred EEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceE
Confidence 4444 89999999999998 24457889999999999999998621 111455 5664 58899
Q ss_pred EEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEEC-CcceEEEE
Q 012788 239 CIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYD-SLNGIEFR 317 (456)
Q Consensus 239 ~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~-~~~gi~ik 317 (456)
+|.+|.|...+.+..+++. +.. .... ..++++.+|.+.....+.-.+. . -.+.+.|+.+.+ ...++...
T Consensus 119 TiS~n~f~~~~k~~l~G~~-d~~--~~~~-~~~vT~hhN~f~~~~~R~P~~r----~--G~~Hv~NN~~~~~~~y~i~~~ 188 (200)
T PF00544_consen 119 TISNNIFDNHNKTMLIGSS-DSN--STDR-GLRVTFHHNYFANTNSRNPRVR----F--GYVHVYNNYYYNWSGYAIGAR 188 (200)
T ss_dssp EEES-EEEEEEETCEESSC-TTC--GGGT-TEEEEEES-EEEEEEE-TTEEC----S--CEEEEES-EEEEECSESEEEE
T ss_pred EEEchhccccccccccCCC-CCc--cccC-CceEEEEeEEECchhhCCCccc----c--cEEEEEEeeeECCCCEEEEcc
Confidence 9999999986555444442 111 1122 3788988888865312211222 1 247788887754 33455554
|
2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A .... |
| >PLN02708 Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.11 Score=55.24 Aligned_cols=108 Identities=11% Similarity=0.101 Sum_probs=62.3
Q ss_pred EeeccEEEEeEEEEeCCcc----eE-EeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCC
Q 012788 183 ISSENVVVSNLTFLNAPAY----NI-HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSG 257 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg 257 (456)
...+++..+|++|+|...- .+ .-...+.+.+.+|+|...- |-+... +.....++|+|...=|-| -|
T Consensus 327 v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~Q-----DTLy~~-~~rq~y~~C~I~GtVDFI---FG 397 (553)
T PLN02708 327 VLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQ-----DTLYAH-SLRQFYKSCRIQGNVDFI---FG 397 (553)
T ss_pred EEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeecc-----ccceeC-CCceEEEeeEEeecCCEE---ec
Confidence 4567899999999997531 11 1235677888888887743 334333 234567888887644433 12
Q ss_pred CCccccccCCCcccEEEEEEEEecC---------CCCeeEeccc-ccCcEEeEEEEeEEEECC
Q 012788 258 WDEYGIAYGRPTTDVHIRRVLLQSS---------SGSSVAFGSE-MSGGISNVQVEKIHLYDS 310 (456)
Q Consensus 258 ~~~~g~~~~~~s~ni~I~n~~~~~~---------~~~gi~igs~-~~~~v~nI~v~n~~~~~~ 310 (456)
.-...++||.+..- ....|...+. ....-..+.|.||++.+.
T Consensus 398 -----------~a~avfq~c~i~~~~~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~C~it~~ 449 (553)
T PLN02708 398 -----------NSAAVFQDCAILIAPRQLKPEKGENNAVTAHGRTDPAQSTGFVFQNCLINGT 449 (553)
T ss_pred -----------CceEEEEccEEEEeccccCCCCCCceEEEeCCCCCCCCCceEEEEccEEecC
Confidence 45677778877631 0122332221 112345677888888764
|
|
| >PLN02484 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.1 Score=55.98 Aligned_cols=138 Identities=12% Similarity=0.117 Sum_probs=78.8
Q ss_pred EEeeccEEEEeEEEEeCCcc----eE-EeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCC
Q 012788 182 FISSENVVVSNLTFLNAPAY----NI-HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKS 256 (456)
Q Consensus 182 ~~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s 256 (456)
....+++..+|++|+|...- .+ .....+...+.+|+|.... |-+... +..-..+||+|...=|-| -
T Consensus 356 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI---F 426 (587)
T PLN02484 356 AATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQ-----DTLYVH-SNRQFFRECDIYGTVDFI---F 426 (587)
T ss_pred EEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccC-----cccccC-CCcEEEEecEEEecccee---c
Confidence 34577899999999997431 12 2245788888999988743 334332 345678899988643333 2
Q ss_pred CCCccccccCCCcccEEEEEEEEecCC-----CCeeEecccc-cCcEEeEEEEeEEEECCcceE----EEEecCCCC-ce
Q 012788 257 GWDEYGIAYGRPTTDVHIRRVLLQSSS-----GSSVAFGSEM-SGGISNVQVEKIHLYDSLNGI----EFRTTKGRG-GY 325 (456)
Q Consensus 257 g~~~~g~~~~~~s~ni~I~n~~~~~~~-----~~gi~igs~~-~~~v~nI~v~n~~~~~~~~gi----~iks~~g~~-g~ 325 (456)
| .-...++||++..-. ..-|.-.+.. ...-..+.|.||++.+...-. ..++.=|+. ..
T Consensus 427 G-----------~a~avfq~C~i~~~~~~~~~~~~ITAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ 495 (587)
T PLN02484 427 G-----------NAAVVLQNCSIYARKPMAQQKNTITAQNRKDPNQNTGISIHACRILAASDLAASKGSFPTYLGRPWKL 495 (587)
T ss_pred c-----------cceeEEeccEEEEecCCCCCceEEEecCCCCCCCCcEEEEEeeEEecCCccccccCccceeccCCCCC
Confidence 2 466778888886420 1122222211 123457888999887653210 112222222 33
Q ss_pred EEeEEEEceEecCc
Q 012788 326 IRQIVISDAELYNI 339 (456)
Q Consensus 326 v~nI~~~ni~~~~~ 339 (456)
.+.+.|-+..|.+.
T Consensus 496 ysrvV~~~s~i~~~ 509 (587)
T PLN02484 496 YSRTVYMMSYMGDH 509 (587)
T ss_pred CceEEEEecccCCe
Confidence 46677777777653
|
|
| >PLN02916 pectinesterase family protein | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.12 Score=54.13 Aligned_cols=139 Identities=15% Similarity=0.107 Sum_probs=78.9
Q ss_pred EEEeeccEEEEeEEEEeCCcc----eE-EeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecC
Q 012788 181 EFISSENVVVSNLTFLNAPAY----NI-HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLK 255 (456)
Q Consensus 181 ~~~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~ 255 (456)
.....+++..+|++|+|+... .+ .-...+...+.+|+|... -|-+... +..-..+||+|+..=|-|
T Consensus 272 ~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~-----QDTLy~~-~~Rqyy~~C~I~GtVDFI--- 342 (502)
T PLN02916 272 FGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGY-----QDTLFVH-SLRQFYRDCHIYGTIDFI--- 342 (502)
T ss_pred EEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecc-----CceeEeC-CCCEEEEecEEeccccee---
Confidence 344567899999999997432 11 223578888888988874 3444443 334678888888754433
Q ss_pred CCCCccccccCCCcccEEEEEEEEecCC-----CCeeEeccc-ccCcEEeEEEEeEEEECCcceE----EEEecCCCC-c
Q 012788 256 SGWDEYGIAYGRPTTDVHIRRVLLQSSS-----GSSVAFGSE-MSGGISNVQVEKIHLYDSLNGI----EFRTTKGRG-G 324 (456)
Q Consensus 256 sg~~~~g~~~~~~s~ni~I~n~~~~~~~-----~~gi~igs~-~~~~v~nI~v~n~~~~~~~~gi----~iks~~g~~-g 324 (456)
-| .-...++||++.... ..-|.-.+. ....-..+.|.||++.+..... ..++.=|+. +
T Consensus 343 FG-----------~a~avFq~C~I~~~~~~~~~~g~ITAq~r~~~~~~tGfvf~~C~it~~~~~~~~~g~~~~yLGRPW~ 411 (502)
T PLN02916 343 FG-----------DAAVVFQNCDIFVRRPMDHQGNMITAQGRDDPHENTGISIQHSRVRASPEFEAVKGRFKSFLGRPWK 411 (502)
T ss_pred cc-----------CceEEEecCEEEEecCCCCCcceEEecCCCCCCCCcEEEEEeeEEecCccccccccccceEeecCCC
Confidence 12 466778888876421 112222221 1123457888888888753211 011111221 2
Q ss_pred eEEeEEEEceEecCc
Q 012788 325 YIRQIVISDAELYNI 339 (456)
Q Consensus 325 ~v~nI~~~ni~~~~~ 339 (456)
.-+.+.|-+..|.+.
T Consensus 412 ~ysrvVf~~t~~~~~ 426 (502)
T PLN02916 412 KYSRTVFLKTDLDGL 426 (502)
T ss_pred CCceEEEEecccCCe
Confidence 346777777777663
|
|
| >PLN02506 putative pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.072 Score=56.46 Aligned_cols=133 Identities=10% Similarity=0.058 Sum_probs=69.5
Q ss_pred EEEeeccEEEEeEEEEeCCcc----e-EEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecC
Q 012788 181 EFISSENVVVSNLTFLNAPAY----N-IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLK 255 (456)
Q Consensus 181 ~~~~~~nv~I~~v~i~ns~~~----~-i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~ 255 (456)
.....+++..+|++|+|.... . -.....+.+.+.+|+|...- |-+... ...-..+||+|...=|-|
T Consensus 314 ~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~Q-----DTLy~~-~~rqyy~~C~I~GtVDFI--- 384 (537)
T PLN02506 314 VAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQ-----DTLYAH-SLRQFYRECEIYGTIDFI--- 384 (537)
T ss_pred EEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeccc-----ccceec-CCceEEEeeEEecccceE---
Confidence 345678899999999998431 1 11234677777777777632 333332 234567777777643332
Q ss_pred CCCCccccccCCCcccEEEEEEEEecCCC-----CeeEeccc-ccCcEEeEEEEeEEEECCcceEEEE-ecCCCCceEEe
Q 012788 256 SGWDEYGIAYGRPTTDVHIRRVLLQSSSG-----SSVAFGSE-MSGGISNVQVEKIHLYDSLNGIEFR-TTKGRGGYIRQ 328 (456)
Q Consensus 256 sg~~~~g~~~~~~s~ni~I~n~~~~~~~~-----~gi~igs~-~~~~v~nI~v~n~~~~~~~~gi~ik-s~~g~~g~v~n 328 (456)
-| .-...++||++..-.. ..|.-.+. ....-..+.|.||++.+.. ...++ .| +.-..
T Consensus 385 FG-----------~a~avfq~C~i~~r~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~-~~yLGRPW----~~~sr 448 (537)
T PLN02506 385 FG-----------NGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSYVLATQ-PTYLGRPW----KQYSR 448 (537)
T ss_pred cc-----------CceeEEeccEEEEccCCCCCCceEEccCCCCCCCCcEEEEEcCEEccCC-ceEEecCC----CCCce
Confidence 11 3456677777764200 12222111 1122345677777776532 22221 22 22355
Q ss_pred EEEEceEecC
Q 012788 329 IVISDAELYN 338 (456)
Q Consensus 329 I~~~ni~~~~ 338 (456)
++|-+..|.+
T Consensus 449 ~v~~~t~l~~ 458 (537)
T PLN02506 449 TVFMNTYMSQ 458 (537)
T ss_pred EEEEecCCCC
Confidence 6666666554
|
|
| >COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.025 Score=55.13 Aligned_cols=123 Identities=11% Similarity=0.035 Sum_probs=79.2
Q ss_pred EEEeeeeeEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEEeCCcceEEeecccceEEEEEEE
Q 012788 139 INGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISV 218 (456)
Q Consensus 139 i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i 218 (456)
|+..+..++.|.| -+|.|.... ....|...|++.++++.+|.+-.|.-- ..+|....++...|++.++
T Consensus 123 i~l~~s~d~~i~~--n~i~G~~~~---------r~~~rGnGI~vyNa~~a~V~~ndisy~-rDgIy~~~S~~~~~~gnr~ 190 (408)
T COG3420 123 IYLHGSADVRIEG--NTIQGLADL---------RVAERGNGIYVYNAPGALVVGNDISYG-RDGIYSDTSQHNVFKGNRF 190 (408)
T ss_pred EEEeccCceEEEe--eEEeecccc---------chhhccCceEEEcCCCcEEEcCccccc-cceEEEcccccceecccch
Confidence 3345566677776 366554321 123456678888888877777665432 3466666666666666666
Q ss_pred ECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEec
Q 012788 219 HAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFG 290 (456)
Q Consensus 219 ~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~ig 290 (456)
... .-|.|...+++..|+++..+...-|.++.- +++++|+|+.-++..++||-+-
T Consensus 191 ~~~-----RygvHyM~t~~s~i~dn~s~~N~vG~ALMy------------s~~l~V~~nrS~Gnrd~Gilln 245 (408)
T COG3420 191 RDL-----RYGVHYMYTNDSRISDNSSRDNRVGYALMY------------SDRLKVSDNRSSGNRDHGILLN 245 (408)
T ss_pred hhe-----eeeEEEEeccCcEeecccccCCcceEEEEE------------eccEEEEcCcccCccccceeee
Confidence 542 346777777777777777776666666654 7788888887777667777654
|
|
| >PLN02713 Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.082 Score=56.43 Aligned_cols=137 Identities=15% Similarity=0.099 Sum_probs=80.6
Q ss_pred EeeccEEEEeEEEEeCCcc----eE-EeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCC
Q 012788 183 ISSENVVVSNLTFLNAPAY----NI-HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSG 257 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg 257 (456)
...+++..+|++|+|...- .+ .-...+...+.+|+|... -|-+.... ..-..+||+|...=|-| -|
T Consensus 337 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~-----QDTLy~~~-~Rqyy~~C~I~GtVDFI---FG 407 (566)
T PLN02713 337 VVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAY-----QDTLYTHS-LRQFYRECDIYGTVDFI---FG 407 (566)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccC-----CcceEECC-CCEEEEeeEEeccccee---cc
Confidence 4568999999999997431 11 224678888999999874 34454433 45688999998654433 22
Q ss_pred CCccccccCCCcccEEEEEEEEecCC-----CCeeEeccc-ccCcEEeEEEEeEEEECCcceE----EEEecCCCC-ceE
Q 012788 258 WDEYGIAYGRPTTDVHIRRVLLQSSS-----GSSVAFGSE-MSGGISNVQVEKIHLYDSLNGI----EFRTTKGRG-GYI 326 (456)
Q Consensus 258 ~~~~g~~~~~~s~ni~I~n~~~~~~~-----~~gi~igs~-~~~~v~nI~v~n~~~~~~~~gi----~iks~~g~~-g~v 326 (456)
.-...++||.+..-. ...|.-.+. ....-..+.|.||++....... ..++.=|+. ..-
T Consensus 408 -----------~a~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~y 476 (566)
T PLN02713 408 -----------NAAVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAADDLASSNYTVKTYLGRPWKEY 476 (566)
T ss_pred -----------cceEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecCCcccccccccceeeecCCCCc
Confidence 467788888886420 112222221 1223457899999998653210 111211221 234
Q ss_pred EeEEEEceEecCc
Q 012788 327 RQIVISDAELYNI 339 (456)
Q Consensus 327 ~nI~~~ni~~~~~ 339 (456)
+.+.|.+..|.+.
T Consensus 477 sr~V~~~s~~~~~ 489 (566)
T PLN02713 477 SRTVVMQSYIDGL 489 (566)
T ss_pred ceEEEEecccCCe
Confidence 5677777777663
|
|
| >PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00092 Score=48.14 Aligned_cols=39 Identities=26% Similarity=0.185 Sum_probs=22.1
Q ss_pred ccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCCceeeeeeE
Q 012788 48 AVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFN 91 (456)
Q Consensus 48 A~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~l~ 91 (456)
|+|||+||||+||.+|+++. ..|-.|---.-||.+.+|-
T Consensus 1 A~GDGvtdDt~A~~a~l~a~-----~~g~~IDg~GlTykVs~lP 39 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEAS-----PVGRKIDGAGLTYKVSSLP 39 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS------TTS-EE-TT-EEEESS--
T ss_pred CCCccccCcHHHHHHHHhcc-----CCCeEEecCCceEEEeeCc
Confidence 79999999999999999864 4454444333378766543
|
The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E. |
| >PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.067 Score=56.77 Aligned_cols=138 Identities=12% Similarity=0.042 Sum_probs=74.2
Q ss_pred EEEeeccEEEEeEEEEeCCcc----eE-EeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecC
Q 012788 181 EFISSENVVVSNLTFLNAPAY----NI-HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLK 255 (456)
Q Consensus 181 ~~~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~ 255 (456)
.....+++..+|++|+|.... .+ .....+...+.+|+|...- |-+... +..-..+||+|...=|-|
T Consensus 308 ~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQ-----DTLy~~-~~rq~y~~c~I~GtVDFI--- 378 (538)
T PLN03043 308 FAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQ-----DTLYVH-SLRQFYRECDIYGTVDFI--- 378 (538)
T ss_pred EEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccC-----cccccC-CCcEEEEeeEEeeccceE---
Confidence 344568899999999997532 12 2245677888888888743 333332 234677888887643333
Q ss_pred CCCCccccccCCCcccEEEEEEEEecCC-----CCeeEecccc-cCcEEeEEEEeEEEECCcceE----EEEecCCCC-c
Q 012788 256 SGWDEYGIAYGRPTTDVHIRRVLLQSSS-----GSSVAFGSEM-SGGISNVQVEKIHLYDSLNGI----EFRTTKGRG-G 324 (456)
Q Consensus 256 sg~~~~g~~~~~~s~ni~I~n~~~~~~~-----~~gi~igs~~-~~~v~nI~v~n~~~~~~~~gi----~iks~~g~~-g 324 (456)
-| .-...++||++..-. ...|.-.+.. ...-..+.|.||++.+...-. ..++.=|+. .
T Consensus 379 FG-----------~a~avfq~c~i~~r~~~~~~~~~iTA~~r~~~~~~tG~~~~~c~i~~~~~~~~~~~~~~~yLGRpW~ 447 (538)
T PLN03043 379 FG-----------NAAAIFQNCNLYARKPMANQKNAFTAQGRTDPNQNTGISIINCTIEAAPDLAMDPNSTMNFLGRPWK 447 (538)
T ss_pred ee-----------cceeeeeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEecEEecCCcccccccccceeccCCCC
Confidence 12 456677788775410 1223322211 122346778888877643110 011221221 2
Q ss_pred eEEeEEEEceEecC
Q 012788 325 YIRQIVISDAELYN 338 (456)
Q Consensus 325 ~v~nI~~~ni~~~~ 338 (456)
.-+.+.|-+..|.+
T Consensus 448 ~ysr~v~~~s~i~~ 461 (538)
T PLN03043 448 PYSRTVYMQSYIGD 461 (538)
T ss_pred CCceEEEEecccCC
Confidence 24556666666655
|
|
| >PLN02468 putative pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.092 Score=56.10 Aligned_cols=136 Identities=10% Similarity=0.080 Sum_probs=77.1
Q ss_pred EeeccEEEEeEEEEeCCcc----e-EEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCC
Q 012788 183 ISSENVVVSNLTFLNAPAY----N-IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSG 257 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~----~-i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg 257 (456)
...+++..+|++|+|+..- . -.....+...+.+|+|.... |-+.... ..-..+||+|...=|-| -|
T Consensus 342 v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~Q-----DTLy~~~-~rq~y~~C~I~GtvDFI---FG 412 (565)
T PLN02468 342 VFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQ-----DTLYAHA-QRQFYRECNIYGTVDFI---FG 412 (565)
T ss_pred EECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEecc-----chhccCC-CceEEEeeEEeccccee---ec
Confidence 3567899999999997532 1 12246788888888888743 3333332 34568888888643433 12
Q ss_pred CCccccccCCCcccEEEEEEEEecCC-----CCeeEeccc-ccCcEEeEEEEeEEEECCcceEEEEecCCCC-ceEEeEE
Q 012788 258 WDEYGIAYGRPTTDVHIRRVLLQSSS-----GSSVAFGSE-MSGGISNVQVEKIHLYDSLNGIEFRTTKGRG-GYIRQIV 330 (456)
Q Consensus 258 ~~~~g~~~~~~s~ni~I~n~~~~~~~-----~~gi~igs~-~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~-g~v~nI~ 330 (456)
.-...++||.+..-. ...|.-.+. ....-..+.|.||++......-..++.=|+. ..-+.+.
T Consensus 413 -----------~a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~yLGRPW~~~sr~v 481 (565)
T PLN02468 413 -----------NSAVVFQNCNILPRRPMKGQQNTITAQGRTDPNQNTGISIQNCTILPLGDLTSVKTFLGRPWKNYSTTV 481 (565)
T ss_pred -----------cceEEEeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEccEEecCCCccccceeeecCCCCCceEE
Confidence 466778888886320 122222221 1223456888888888653211122222221 2344566
Q ss_pred EEceEecC
Q 012788 331 ISDAELYN 338 (456)
Q Consensus 331 ~~ni~~~~ 338 (456)
|-+..|.+
T Consensus 482 ~~~s~~~~ 489 (565)
T PLN02468 482 IMHSMMGS 489 (565)
T ss_pred EEecccCC
Confidence 76666665
|
|
| >PLN02217 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.097 Score=56.65 Aligned_cols=137 Identities=12% Similarity=0.131 Sum_probs=82.6
Q ss_pred EeeccEEEEeEEEEeCCcc----eE-EeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCC
Q 012788 183 ISSENVVVSNLTFLNAPAY----NI-HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSG 257 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg 257 (456)
...+++..+|++|+|...- .+ .....+...+.+|+|.... |-+... ..+-.+++|+|...=|-| -|
T Consensus 334 v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI---FG 404 (670)
T PLN02217 334 IVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQ-----DTLYAH-SHRQFYRDCTISGTIDFL---FG 404 (670)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeecc-----chhccC-CCcEEEEeCEEEEeccEE---ec
Confidence 3577899999999997531 12 2346788999999998743 434333 345689999999754433 12
Q ss_pred CCccccccCCCcccEEEEEEEEecCCC-----CeeEeccc-ccCcEEeEEEEeEEEECCcceEE----EEecCCCC-ceE
Q 012788 258 WDEYGIAYGRPTTDVHIRRVLLQSSSG-----SSVAFGSE-MSGGISNVQVEKIHLYDSLNGIE----FRTTKGRG-GYI 326 (456)
Q Consensus 258 ~~~~g~~~~~~s~ni~I~n~~~~~~~~-----~gi~igs~-~~~~v~nI~v~n~~~~~~~~gi~----iks~~g~~-g~v 326 (456)
.-...++||++..... .-|.-.+. ....-..+.|.||++.+...-+. .+++=||. ...
T Consensus 405 -----------~a~avfq~C~I~~r~~~~~~~~~ITAqgr~~~~~~tGfvf~~C~i~~~~~~~~~~~~~~~yLGRPW~~y 473 (670)
T PLN02217 405 -----------DAAAVFQNCTLLVRKPLLNQACPITAHGRKDPRESTGFVLQGCTIVGEPDYLAVKETSKAYLGRPWKEY 473 (670)
T ss_pred -----------CceEEEEccEEEEccCCCCCceeEecCCCCCCCCCceEEEEeeEEecCccccccccccceeeccCCCCC
Confidence 4568889998874210 11222211 11234579999999988642111 11222222 335
Q ss_pred EeEEEEceEecCc
Q 012788 327 RQIVISDAELYNI 339 (456)
Q Consensus 327 ~nI~~~ni~~~~~ 339 (456)
..+.|-+..|.+.
T Consensus 474 srvVf~~t~l~~~ 486 (670)
T PLN02217 474 SRTIIMNTFIPDF 486 (670)
T ss_pred ceEEEEecccCCe
Confidence 6788888877764
|
|
| >PLN02995 Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.11 Score=55.04 Aligned_cols=137 Identities=12% Similarity=0.120 Sum_probs=76.3
Q ss_pred EeeccEEEEeEEEEeCCcc----eE-EeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCC
Q 012788 183 ISSENVVVSNLTFLNAPAY----NI-HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSG 257 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg 257 (456)
...+++..+|++|+|+... .+ .....+...+.+|+|...- |-+... ...-..+||+|+..=|-| -|
T Consensus 309 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI---FG 379 (539)
T PLN02995 309 IEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQ-----DTLMVH-SQRQFYRECYIYGTVDFI---FG 379 (539)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEeccc-----chhccC-CCceEEEeeEEeeccceE---ec
Confidence 3577889999999997532 11 2245778888888888743 333332 234578888888644433 12
Q ss_pred CCccccccCCCcccEEEEEEEEecCCC-----CeeEeccc-ccCcEEeEEEEeEEEECCcceE----EEEecCCCC-ceE
Q 012788 258 WDEYGIAYGRPTTDVHIRRVLLQSSSG-----SSVAFGSE-MSGGISNVQVEKIHLYDSLNGI----EFRTTKGRG-GYI 326 (456)
Q Consensus 258 ~~~~g~~~~~~s~ni~I~n~~~~~~~~-----~gi~igs~-~~~~v~nI~v~n~~~~~~~~gi----~iks~~g~~-g~v 326 (456)
.-...++||++..-.. .-|.-.+. ....-..+.|.||++.+..... ..++.=|+. +.-
T Consensus 380 -----------~a~avf~~C~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~y 448 (539)
T PLN02995 380 -----------NAAAVFQNCIILPRRPLKGQANVITAQGRADPFQNTGISIHNSRILPAPDLKPVVRTVKTYMGRPWMKF 448 (539)
T ss_pred -----------ccceEEeccEEEEecCCCCCcceEecCCCCCCCCCceEEEEeeEEecCCcccccccccceeccCCCCCC
Confidence 4567788888764200 11222211 1123457888888888753211 012222221 234
Q ss_pred EeEEEEceEecCc
Q 012788 327 RQIVISDAELYNI 339 (456)
Q Consensus 327 ~nI~~~ni~~~~~ 339 (456)
+.+.|-+..|.+.
T Consensus 449 srvv~~~t~~~~~ 461 (539)
T PLN02995 449 SRTVVLQTYLDNV 461 (539)
T ss_pred cceEEEeccccCc
Confidence 5677777777653
|
|
| >PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.1 Score=52.53 Aligned_cols=54 Identities=15% Similarity=0.152 Sum_probs=35.3
Q ss_pred EEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCC-ceee-eeeEeccceEEEeccCcEEEec
Q 012788 41 VSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSG-KWLT-GSFNLTSHLTLFLEKGAVILGS 109 (456)
Q Consensus 41 ~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G-~Yl~-g~l~L~s~~tL~l~~ga~i~~~ 109 (456)
=.|+.|=..++. | +++||+. -++|.+-|| +|.+ +++.|++...+.. .||+++..
T Consensus 44 Eqvkt~~~~P~e--D----le~~I~~--------haKVaL~Pg~~Y~i~~~V~I~~~cYIiG-nGA~V~v~ 99 (386)
T PF01696_consen 44 EQVKTYWMEPGE--D----LEEAIRQ--------HAKVALRPGAVYVIRKPVNIRSCCYIIG-NGATVRVN 99 (386)
T ss_pred EeEEEEEcCCCc--C----HHHHHHh--------cCEEEeCCCCEEEEeeeEEecceEEEEC-CCEEEEEe
Confidence 346667666654 4 4445542 234555555 6987 4999999998876 48888764
|
E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis. |
| >PLN02416 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.12 Score=54.80 Aligned_cols=136 Identities=13% Similarity=0.135 Sum_probs=74.2
Q ss_pred EeeccEEEEeEEEEeCCcc----e-EEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCC
Q 012788 183 ISSENVVVSNLTFLNAPAY----N-IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSG 257 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~----~-i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg 257 (456)
...+++..+|++|+|+... . -.....+.+.+.+|+|.... |-+... +..-..+||+|+..=|-| -|
T Consensus 314 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI---FG 384 (541)
T PLN02416 314 VSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQ-----DTLYVH-SFRQFYRECDIYGTIDYI---FG 384 (541)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEeccc-----chhccC-CCceEEEeeEEeecccee---ec
Confidence 3578899999999997432 1 11235677888888888743 333332 345578888888644433 12
Q ss_pred CCccccccCCCcccEEEEEEEEecCCC-C---e-eEeccc-ccCcEEeEEEEeEEEECCcceE----EEEecCCCC-ceE
Q 012788 258 WDEYGIAYGRPTTDVHIRRVLLQSSSG-S---S-VAFGSE-MSGGISNVQVEKIHLYDSLNGI----EFRTTKGRG-GYI 326 (456)
Q Consensus 258 ~~~~g~~~~~~s~ni~I~n~~~~~~~~-~---g-i~igs~-~~~~v~nI~v~n~~~~~~~~gi----~iks~~g~~-g~v 326 (456)
.-...++||++..-.. . + |.-.+. ....-..+.|.||++.+...-. ..++.=|+. ..-
T Consensus 385 -----------~a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~~ 453 (541)
T PLN02416 385 -----------NAAVVFQACNIVSKMPMPGQFTVITAQSRDTPDEDTGISIQNCSILATEDLYSNSNSVKSYLGRPWRVY 453 (541)
T ss_pred -----------cceEEEeccEEEEecCCCCCceEEECCCCCCCCCCCEEEEEeeEEecCCccccccccccccccCCCCCC
Confidence 4567788888764200 0 1 111111 1123456788888887643210 112222222 234
Q ss_pred EeEEEEceEecC
Q 012788 327 RQIVISDAELYN 338 (456)
Q Consensus 327 ~nI~~~ni~~~~ 338 (456)
..+.|-+..|.+
T Consensus 454 sr~v~~~s~i~~ 465 (541)
T PLN02416 454 SRTVVLESYIDD 465 (541)
T ss_pred ccEEEEecccCC
Confidence 566666666665
|
|
| >PLN02745 Putative pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.22 Score=53.54 Aligned_cols=136 Identities=10% Similarity=0.114 Sum_probs=80.0
Q ss_pred EeeccEEEEeEEEEeCCcc----e-EEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCC
Q 012788 183 ISSENVVVSNLTFLNAPAY----N-IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSG 257 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~----~-i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg 257 (456)
...+++..+|++|+|+..- . -.....+...+.+|+|...- |-+... ...-.++||+|...=|-| -|
T Consensus 369 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI---FG 439 (596)
T PLN02745 369 ALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQ-----DTLYAQ-THRQFYRSCVITGTIDFI---FG 439 (596)
T ss_pred EEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecc-----cccccC-CCcEEEEeeEEEeeccEE---ec
Confidence 3678899999999996431 1 12246788999999998743 333332 345688999998754433 12
Q ss_pred CCccccccCCCcccEEEEEEEEecCC-----CCeeEeccc-ccCcEEeEEEEeEEEECCcceEE----EEecCCCC-ceE
Q 012788 258 WDEYGIAYGRPTTDVHIRRVLLQSSS-----GSSVAFGSE-MSGGISNVQVEKIHLYDSLNGIE----FRTTKGRG-GYI 326 (456)
Q Consensus 258 ~~~~g~~~~~~s~ni~I~n~~~~~~~-----~~gi~igs~-~~~~v~nI~v~n~~~~~~~~gi~----iks~~g~~-g~v 326 (456)
.-...++||++.... ..-|.-.+. ....-..+.|.||++.+...... .++.=|+. ..-
T Consensus 440 -----------~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRPW~~y 508 (596)
T PLN02745 440 -----------DAAAIFQNCLIFVRKPLPNQQNTVTAQGRVDKFETTGIVLQNCRIAPDEDLKPVKTEVKSYLGRPWKEF 508 (596)
T ss_pred -----------ceeEEEEecEEEEecCCCCCCceEEecCCCCCCCCceEEEEeeEEecCccccccccccceeccCCCCCC
Confidence 467788888886420 112222221 11234678899999987542111 12222222 234
Q ss_pred EeEEEEceEecC
Q 012788 327 RQIVISDAELYN 338 (456)
Q Consensus 327 ~nI~~~ni~~~~ 338 (456)
+.+.|-+..|.+
T Consensus 509 srvv~~~s~l~~ 520 (596)
T PLN02745 509 SRTIVMESTIED 520 (596)
T ss_pred ccEEEEecccCC
Confidence 667777777665
|
|
| >PLN02314 pectinesterase | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.16 Score=54.67 Aligned_cols=136 Identities=14% Similarity=0.132 Sum_probs=78.5
Q ss_pred EeeccEEEEeEEEEeCCcc----e-EEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCC
Q 012788 183 ISSENVVVSNLTFLNAPAY----N-IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSG 257 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~----~-i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg 257 (456)
...+++..+|++|+|...- . -.....+...+.+|++.... |-+... +..-..+||+|...=|-| -|
T Consensus 362 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~Q-----DTLy~~-~~rq~y~~C~I~GtvDFI---FG 432 (586)
T PLN02314 362 AAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQ-----DTLYAH-SNRQFYRDCDITGTIDFI---FG 432 (586)
T ss_pred EEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEecc-----chheeC-CCCEEEEeeEEEecccee---cc
Confidence 4577899999999997421 1 22346778888999988743 334333 344678889988744433 12
Q ss_pred CCccccccCCCcccEEEEEEEEecCC-----CCeeEecccc-cCcEEeEEEEeEEEECCcceEEEEecCCCC-ceEEeEE
Q 012788 258 WDEYGIAYGRPTTDVHIRRVLLQSSS-----GSSVAFGSEM-SGGISNVQVEKIHLYDSLNGIEFRTTKGRG-GYIRQIV 330 (456)
Q Consensus 258 ~~~~g~~~~~~s~ni~I~n~~~~~~~-----~~gi~igs~~-~~~v~nI~v~n~~~~~~~~gi~iks~~g~~-g~v~nI~ 330 (456)
.-...++||.+.... ...|.-.+.. ...-..+.|.||++.+... +..++.-|+. ..-+.++
T Consensus 433 -----------~a~avf~~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~-~~~~~yLGRpW~~ysr~v 500 (586)
T PLN02314 433 -----------NAAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQRCTISAFGN-LTAPTYLGRPWKDFSTTV 500 (586)
T ss_pred -----------CceeeeeccEEEEecCCCCCCceEecCCCCCCCCCCEEEEEeeEEecCCc-ccccccccCCCCCCceEE
Confidence 466778888886420 1122222211 1334578889998887542 1222222222 2345566
Q ss_pred EEceEecCc
Q 012788 331 ISDAELYNI 339 (456)
Q Consensus 331 ~~ni~~~~~ 339 (456)
|-+..|.+.
T Consensus 501 ~~~s~i~~~ 509 (586)
T PLN02314 501 IMQSYIGSF 509 (586)
T ss_pred EEecccCCc
Confidence 777666653
|
|
| >PLN02197 pectinesterase | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.24 Score=53.04 Aligned_cols=137 Identities=13% Similarity=0.109 Sum_probs=77.1
Q ss_pred EEeeccEEEEeEEEEeCCcc----eE-EeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCC
Q 012788 182 FISSENVVVSNLTFLNAPAY----NI-HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKS 256 (456)
Q Consensus 182 ~~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s 256 (456)
....+++..+|++|+|+... .+ .....+...+.+|+|... -|-+... ...-.++||+|+..=|-| -
T Consensus 360 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~Gy-----QDTLy~~-~~Rqyy~~C~I~GtVDFI---F 430 (588)
T PLN02197 360 QVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGY-----QDTLYVN-NGRQFYRNIVVSGTVDFI---F 430 (588)
T ss_pred EEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEec-----CcceEec-CCCEEEEeeEEEeccccc---c
Confidence 34578899999999997431 12 224578888888888874 3444443 345578888888643322 2
Q ss_pred CCCccccccCCCcccEEEEEEEEecCC-CCe----eEecccc--cCcEEeEEEEeEEEECCcce----EEEEecCCCC-c
Q 012788 257 GWDEYGIAYGRPTTDVHIRRVLLQSSS-GSS----VAFGSEM--SGGISNVQVEKIHLYDSLNG----IEFRTTKGRG-G 324 (456)
Q Consensus 257 g~~~~g~~~~~~s~ni~I~n~~~~~~~-~~g----i~igs~~--~~~v~nI~v~n~~~~~~~~g----i~iks~~g~~-g 324 (456)
| .....++||++.... ..| |.-.+.. ...-..+.|.||++.+...- ...++.=|+. .
T Consensus 431 G-----------~a~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C~it~~~~~~~~~~~~~~yLGRPW~ 499 (588)
T PLN02197 431 G-----------KSATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCRIVPDKKLTAERLTVASYLGRPWK 499 (588)
T ss_pred c-----------ceeeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEccEEecCCcccccccccccccCCCCC
Confidence 2 344778888876320 111 1111111 12235688888888875321 1122222322 3
Q ss_pred eEEeEEEEceEecC
Q 012788 325 YIRQIVISDAELYN 338 (456)
Q Consensus 325 ~v~nI~~~ni~~~~ 338 (456)
..+.+.|-+..|.+
T Consensus 500 ~ysrvV~~~s~~~~ 513 (588)
T PLN02197 500 KFSTTVIISTEIGD 513 (588)
T ss_pred CCceEEEEecccCC
Confidence 34667777777765
|
|
| >PLN02301 pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.21 Score=53.06 Aligned_cols=110 Identities=14% Similarity=0.121 Sum_probs=63.2
Q ss_pred EEEeeccEEEEeEEEEeCCcc----eE-EeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecC
Q 012788 181 EFISSENVVVSNLTFLNAPAY----NI-HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLK 255 (456)
Q Consensus 181 ~~~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~ 255 (456)
.....+++..+|++|+|.... .+ .-...+...+.+|+|...- |-+...+ ..-..+||+|...=|-|
T Consensus 318 ~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~Q-----DTLy~~~-~Rqyy~~C~I~GtVDFI--- 388 (548)
T PLN02301 318 VAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQ-----DTLYAHS-LRQFYRDSYITGTVDFI--- 388 (548)
T ss_pred EEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeecc-----ccceecC-CcEEEEeeEEEecccee---
Confidence 334567899999999997432 11 2235677888888888743 3333332 34578888888643433
Q ss_pred CCCCccccccCCCcccEEEEEEEEecCCC-----CeeEeccc-ccCcEEeEEEEeEEEECC
Q 012788 256 SGWDEYGIAYGRPTTDVHIRRVLLQSSSG-----SSVAFGSE-MSGGISNVQVEKIHLYDS 310 (456)
Q Consensus 256 sg~~~~g~~~~~~s~ni~I~n~~~~~~~~-----~gi~igs~-~~~~v~nI~v~n~~~~~~ 310 (456)
-| .-...++||++..-.. .-|.-.+. ....-..+.|.||++.+.
T Consensus 389 FG-----------~a~avfq~c~i~~~~~~~~~~~~iTAqgr~~~~~~tG~vf~~c~i~~~ 438 (548)
T PLN02301 389 FG-----------NAAVVFQNCKIVARKPMAGQKNMVTAQGRTDPNQNTGISIQKCDIIAS 438 (548)
T ss_pred cc-----------cceeEEeccEEEEecCCCCCCceEEecCCCCCCCCCEEEEEeeEEecC
Confidence 12 4567777887764200 11222211 112345677888888764
|
|
| >PLN02488 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.38 Score=50.31 Aligned_cols=136 Identities=13% Similarity=0.141 Sum_probs=73.2
Q ss_pred EeeccEEEEeEEEEeCCcc----eE-EeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCC
Q 012788 183 ISSENVVVSNLTFLNAPAY----NI-HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSG 257 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg 257 (456)
...+++..+|++|+|...- .+ .....+...+.+|+|... -|-+... +..-..++|+|...=|-|- |
T Consensus 281 v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~Gy-----QDTLy~~-~~RqyyrdC~I~GtVDFIF---G 351 (509)
T PLN02488 281 SNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGY-----QDALYPH-RDRQFYRECFITGTVDFIC---G 351 (509)
T ss_pred EEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecc-----CcceeeC-CCCEEEEeeEEeeccceEe---c
Confidence 3466788889999987431 11 123567788888888763 3334332 3456788888886444331 2
Q ss_pred CCccccccCCCcccEEEEEEEEecCCC-----CeeEecccc-cCcEEeEEEEeEEEECCcceE----EEEecCCCC-ceE
Q 012788 258 WDEYGIAYGRPTTDVHIRRVLLQSSSG-----SSVAFGSEM-SGGISNVQVEKIHLYDSLNGI----EFRTTKGRG-GYI 326 (456)
Q Consensus 258 ~~~~g~~~~~~s~ni~I~n~~~~~~~~-----~gi~igs~~-~~~v~nI~v~n~~~~~~~~gi----~iks~~g~~-g~v 326 (456)
.-...++||++..-.. .-|.-.+.. ...-..+.|.||++....... ..++.=|+. ...
T Consensus 352 -----------~a~avFq~C~I~sr~~~~~~~~~ITAq~R~~~~~~tGfvf~~C~it~~~~~~~~~~~~~~YLGRPW~~y 420 (509)
T PLN02488 352 -----------NAAAVFQFCQIVARQPMMGQSNVITAQSRESKDDNSGFSIQKCNITASSDLDPVKATVKTYLGRPWRKY 420 (509)
T ss_pred -----------ceEEEEEccEEEEecCCCCCCEEEEeCCCCCCCCCcEEEEEeeEEecCCcccccccccceeecCCCCCC
Confidence 4667788887764200 112222211 122346788888887654211 112222221 234
Q ss_pred EeEEEEceEecC
Q 012788 327 RQIVISDAELYN 338 (456)
Q Consensus 327 ~nI~~~ni~~~~ 338 (456)
+.+.|-+..|.+
T Consensus 421 SrvVf~~s~i~~ 432 (509)
T PLN02488 421 STVAVLQSFIGD 432 (509)
T ss_pred ccEEEEeccCCC
Confidence 556666666655
|
|
| >PLN02990 Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.26 Score=52.77 Aligned_cols=137 Identities=13% Similarity=0.159 Sum_probs=77.6
Q ss_pred EeeccEEEEeEEEEeCCcc----eE-EeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCC
Q 012788 183 ISSENVVVSNLTFLNAPAY----NI-HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSG 257 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg 257 (456)
...+++..+|++|+|.... .+ .....+...+.+|+|.... |-+... +..-..++|+|...=|-|- |
T Consensus 344 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFIF---G 414 (572)
T PLN02990 344 INGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQ-----DTLYVH-SHRQFFRDCTVSGTVDFIF---G 414 (572)
T ss_pred EEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccc-----chhccC-CCcEEEEeeEEecccceEc---c
Confidence 3567899999999997532 11 2245778888999988743 333332 3456788899887544331 2
Q ss_pred CCccccccCCCcccEEEEEEEEecCC-CC---e-eEeccc-ccCcEEeEEEEeEEEECCcceEE----EEecCCCC-ceE
Q 012788 258 WDEYGIAYGRPTTDVHIRRVLLQSSS-GS---S-VAFGSE-MSGGISNVQVEKIHLYDSLNGIE----FRTTKGRG-GYI 326 (456)
Q Consensus 258 ~~~~g~~~~~~s~ni~I~n~~~~~~~-~~---g-i~igs~-~~~~v~nI~v~n~~~~~~~~gi~----iks~~g~~-g~v 326 (456)
.-...++||++..-. .. + |.-.+. ....-..+.|.||++.+...... .+++=|+. ..-
T Consensus 415 -----------~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~C~it~~~~~~~~~~~~~~yLGRpW~~y 483 (572)
T PLN02990 415 -----------DAKVVLQNCNIVVRKPMKGQSCMITAQGRSDVRESTGLVLQNCHITGEPAYIPVKSINKAYLGRPWKEF 483 (572)
T ss_pred -----------CceEEEEccEEEEecCCCCCceEEEeCCCCCCCCCceEEEEeeEEecCccccccccccceEeecCCCCC
Confidence 356778888886420 11 1 221111 11234568889998887542111 11111221 234
Q ss_pred EeEEEEceEecCc
Q 012788 327 RQIVISDAELYNI 339 (456)
Q Consensus 327 ~nI~~~ni~~~~~ 339 (456)
+.+.|.+..|.+.
T Consensus 484 srvV~~~s~i~~~ 496 (572)
T PLN02990 484 SRTIIMGTTIDDV 496 (572)
T ss_pred ceEEEEecccCCe
Confidence 5677777777653
|
|
| >PLN02313 Pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.31 Score=52.35 Aligned_cols=108 Identities=12% Similarity=0.119 Sum_probs=57.0
Q ss_pred EeeccEEEEeEEEEeCCcc----eE-EeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCC
Q 012788 183 ISSENVVVSNLTFLNAPAY----NI-HPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSG 257 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~----~i-~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg 257 (456)
...+++..+|++|+|.... .+ .....+...+.+|+|.... |-+... +..-..++|+|...=|-|- |
T Consensus 359 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~Q-----DTLy~~-~~rq~y~~c~I~GtvDFIF---G 429 (587)
T PLN02313 359 AVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQ-----DTLYVH-SNRQFFVKCHITGTVDFIF---G 429 (587)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEeccc-----chhccC-CCcEEEEeeEEeeccceec---c
Confidence 4567889999999997532 11 1234666777777777632 333332 2344677777775433331 1
Q ss_pred CCccccccCCCcccEEEEEEEEecCC-C----CeeEeccc-ccCcEEeEEEEeEEEECC
Q 012788 258 WDEYGIAYGRPTTDVHIRRVLLQSSS-G----SSVAFGSE-MSGGISNVQVEKIHLYDS 310 (456)
Q Consensus 258 ~~~~g~~~~~~s~ni~I~n~~~~~~~-~----~gi~igs~-~~~~v~nI~v~n~~~~~~ 310 (456)
.-...++||.+.... . .-|.-.+. ....-..+.|.||++.+.
T Consensus 430 -----------~a~avfq~c~i~~r~~~~~~~~~iTAqgr~~~~~~tG~v~~~c~i~~~ 477 (587)
T PLN02313 430 -----------NAAAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGT 477 (587)
T ss_pred -----------ceeEEEEccEEEEecCCCCCcceEEecCCCCCCCCceEEEEecEEecC
Confidence 355667777665310 0 11222111 112234567777777654
|
|
| >PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.4 Score=45.69 Aligned_cols=103 Identities=13% Similarity=0.146 Sum_probs=66.3
Q ss_pred cccEEEEEEEEecCCCCeeEecccc-cCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCcceeEEEec
Q 012788 269 TTDVHIRRVLLQSSSGSSVAFGSEM-SGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVAFGACG 347 (456)
Q Consensus 269 s~ni~I~n~~~~~~~~~gi~igs~~-~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~~i~i~~ 347 (456)
+.+.+|+||+|.+....||.+.... ...+.++.|++..+.....|+.+.... .+ +. ..++|..+++...+|.+..
T Consensus 121 ss~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi~i~~~~--~~-~~-n~I~NN~I~~N~~Gi~~~~ 196 (246)
T PF07602_consen 121 SSSPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYFNKTGISISDNA--AP-VE-NKIENNIIENNNIGIVAIG 196 (246)
T ss_pred cCCcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEecCcCeEEEccc--CC-cc-ceeeccEEEeCCcCeEeec
Confidence 3489999999998657898875443 567889999999999888899997653 23 22 2446666666555777543
Q ss_pred cCCCCCC-CCCCCCCCCeEEEEEEEEEEee
Q 012788 348 NCGSHPD-DDFDPDALPAIDQITFKDIIGT 376 (456)
Q Consensus 348 ~y~~~~~-~~~~~~~~~~i~nIt~~nI~~~ 376 (456)
.-.+-.. ..-.+.. -.|++-..-||.-.
T Consensus 197 ~~pDlG~~s~~~~g~-N~~~~N~~~Dl~~~ 225 (246)
T PF07602_consen 197 DAPDLGTGSEGSPGN-NIFRNNGRYDLNNS 225 (246)
T ss_pred cCCccccCCCCCCCC-cEEecCcceeeEec
Confidence 3211010 0011222 26777777777774
|
Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT). |
| >COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.38 E-value=1.5 Score=42.93 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=27.9
Q ss_pred chHHHHHHHHHHhhccccCCCcEEEecCCceeeeeeEec-c--ceEEEec
Q 012788 55 LNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLT-S--HLTLFLE 101 (456)
Q Consensus 55 ddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~l~L~-s--~~tL~l~ 101 (456)
++-.-||+|+|+|..-.....-.+.|-+|.|. +.+.++ + +++|+.+
T Consensus 92 ~~f~TIQaAvdaA~~~~~~kr~yI~vk~GvY~-e~v~Vp~~~~~ITLyGe 140 (405)
T COG4677 92 VTFTTIQAAVDAAIIKRTNKRQYIAVKAGVYQ-ETVYVPAAPGGITLYGE 140 (405)
T ss_pred cchHHHHHHHhhhcccCCCceEEEEEccceec-eeEEecCCCCceeEEec
Confidence 56678999999984211111235667799994 444443 3 3777765
|
|
| >TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.14 Score=34.86 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=14.1
Q ss_pred eeeecCccCEEEEecEEecCCceEecCC
Q 012788 229 GIVPDSSDNVCIEDCIIAMGHDAISLKS 256 (456)
Q Consensus 229 Gi~~~~s~nV~I~n~~i~~gDD~iai~s 256 (456)
||.++.+.+.+|+++.+....|||.+..
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~ 28 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD 28 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe
Confidence 3444445555555555555444555544
|
This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences. |
| >PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue | Back alignment and domain information |
|---|
Probab=92.56 E-value=2.2 Score=39.74 Aligned_cols=129 Identities=20% Similarity=0.221 Sum_probs=67.6
Q ss_pred ceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEec-CCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeE
Q 012788 210 NVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAM-GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVA 288 (456)
Q Consensus 210 nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~ 288 (456)
..+++|+.|-.+ ..||||... +-+|+|++++. +.|++.++.. ...++|.+.-..+..+--|.
T Consensus 62 GatlkNvIiG~~----~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~-----------~~~~~I~ggga~~A~DKV~Q 124 (215)
T PF03211_consen 62 GATLKNVIIGAN----QADGIHCKG--SCTLENVWWEDVCEDAATFKGD-----------GGTVTIIGGGARNASDKVFQ 124 (215)
T ss_dssp TEEEEEEEETSS-----TT-EEEES--CEEEEEEEESS-SSESEEEESS-----------EEEEEEESTEEEEEEEEEEE
T ss_pred CCEEEEEEEcCC----CcCceEEcC--CEEEEEEEecccceeeeEEcCC-----------CceEEEeCCcccCCCccEEE
Confidence 456667666432 468999875 78899999887 8999999874 22444444333321011111
Q ss_pred ecccccCcEEeEEEEeEEEECCcceEEEEecCC---CCceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeE
Q 012788 289 FGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKG---RGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAI 365 (456)
Q Consensus 289 igs~~~~~v~nI~v~n~~~~~~~~gi~iks~~g---~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i 365 (456)
.. +--.+.|+|-+..+ .|-.+.+-.+ .++.=+++.+++........-+.|..+|++ . ..|
T Consensus 125 ~N-----g~Gtv~I~nF~a~d--~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD---------~-ati 187 (215)
T PF03211_consen 125 HN-----GGGTVTIKNFYAED--FGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGD---------T-ATI 187 (215)
T ss_dssp E------SSEEEEEEEEEEEE--EEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTT---------T-EEE
T ss_pred ec-----CceeEEEEeEEEcC--CCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCC---------e-EEE
Confidence 11 11245666644432 3444444311 123446677776665544444556667765 1 356
Q ss_pred EEEEEEE
Q 012788 366 DQITFKD 372 (456)
Q Consensus 366 ~nIt~~n 372 (456)
++++++.
T Consensus 188 ~~~~~~~ 194 (215)
T PF03211_consen 188 SNSCIKG 194 (215)
T ss_dssp EEEEEEE
T ss_pred EEEEecC
Confidence 6666665
|
It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A. |
| >TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) | Back alignment and domain information |
|---|
Probab=91.39 E-value=0.37 Score=32.66 Aligned_cols=40 Identities=20% Similarity=0.153 Sum_probs=30.2
Q ss_pred EEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEec
Q 012788 203 IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAM 247 (456)
Q Consensus 203 i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~ 247 (456)
|.+..+.+.+|++.++.. +.|||++..+++-+|+++.+..
T Consensus 2 I~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 2 IYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred EEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEEc
Confidence 566677777788888876 4678888888888888887764
|
This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences. |
| >PLN02480 Probable pectinesterase | Back alignment and domain information |
|---|
Probab=90.71 E-value=13 Score=37.41 Aligned_cols=113 Identities=12% Similarity=0.173 Sum_probs=70.7
Q ss_pred EeecccceEEEEEEEECCCC-----CCCCceeee-cCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEE
Q 012788 204 HPVYCSNVHIQNISVHAPPE-----SPYTVGIVP-DSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRV 277 (456)
Q Consensus 204 ~~~~~~nv~i~n~~i~~~~~-----~~n~DGi~~-~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~ 277 (456)
.....++++++|++|.+... .....++.+ ..++++.+.||.|....|-+.... ..-.++||
T Consensus 127 vtV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~-------------gR~yf~~C 193 (343)
T PLN02480 127 FTVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK-------------GRHYYHSC 193 (343)
T ss_pred EEEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC-------------CCEEEEeC
Confidence 34456889999999999632 112345555 357889999999999888776443 34568899
Q ss_pred EEecCCCCeeEecccccCcEEeEEEEeEEEECCcc------eEEEEecCCCCceEEeEEEEceEecC
Q 012788 278 LLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLN------GIEFRTTKGRGGYIRQIVISDAELYN 338 (456)
Q Consensus 278 ~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~------gi~iks~~g~~g~v~nI~~~ni~~~~ 338 (456)
++.+. --+=+|. -...|+||++..... | .|.........-....|.|+++..
T Consensus 194 ~IeG~--VDFIFG~------g~a~fe~C~i~s~~~~~~~~~G-~ITA~~r~~~~~~GfvF~~C~i~g 251 (343)
T PLN02480 194 YIQGS--IDFIFGR------GRSIFHNCEIFVIADRRVKIYG-SITAHNRESEDNSGFVFIKGKVYG 251 (343)
T ss_pred EEEee--eeEEccc------eeEEEEccEEEEecCCCCCCce-EEEcCCCCCCCCCEEEEECCEEcc
Confidence 99864 2222231 357899999975421 2 132221111222347788888875
|
|
| >PLN02773 pectinesterase | Back alignment and domain information |
|---|
Probab=90.41 E-value=7.1 Score=38.75 Aligned_cols=113 Identities=15% Similarity=0.155 Sum_probs=73.6
Q ss_pred EeecccceEEEEEEEECCCCCCCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecC
Q 012788 204 HPVYCSNVHIQNISVHAPPESPYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSS 282 (456)
Q Consensus 204 ~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~ 282 (456)
.....+++..+|++|.+.........+.+. .+..+.+.||.|....|-+..+. ..-.++||++.+.
T Consensus 97 v~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~-------------gr~yf~~c~IeG~ 163 (317)
T PLN02773 97 VIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHY-------------GKQYLRDCYIEGS 163 (317)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCC-------------CCEEEEeeEEeec
Confidence 334578899999999986432222334332 46889999999999888887654 3467899999874
Q ss_pred CCCeeEecccccCcEEeEEEEeEEEECCcceEEEEecCCCC--ceEEeEEEEceEecCc
Q 012788 283 SGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRG--GYIRQIVISDAELYNI 339 (456)
Q Consensus 283 ~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~--g~v~nI~~~ni~~~~~ 339 (456)
--+-.|. -...|++|++.....| .|. .+++. ..-.-..|.|+++...
T Consensus 164 --VDFIFG~------g~a~Fe~c~i~s~~~g-~IT-A~~r~~~~~~~GfvF~~c~it~~ 212 (317)
T PLN02773 164 --VDFIFGN------STALLEHCHIHCKSAG-FIT-AQSRKSSQESTGYVFLRCVITGN 212 (317)
T ss_pred --ccEEeec------cEEEEEeeEEEEccCc-EEE-CCCCCCCCCCceEEEEccEEecC
Confidence 2233342 3479999999865544 232 22110 1112478899998764
|
|
| >PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) | Back alignment and domain information |
|---|
Probab=90.06 E-value=20 Score=36.54 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=11.1
Q ss_pred cccEEEEEEEEecCCCCeeEeccc
Q 012788 269 TTDVHIRRVLLQSSSGSSVAFGSE 292 (456)
Q Consensus 269 s~ni~I~n~~~~~~~~~gi~igs~ 292 (456)
+.|..++|.....+..+|+-+++.
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aD 286 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGAD 286 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS
T ss_pred eeeEEEeccceEEEeecceeccCC
Confidence 445555555554444555555543
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A .... |
| >PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional | Back alignment and domain information |
|---|
Probab=88.81 E-value=1.5 Score=42.11 Aligned_cols=64 Identities=14% Similarity=0.284 Sum_probs=32.1
Q ss_pred cccEEEEEEEEecCCCCeeEeccccc-----CcEEeEEEEeEEEECC-----cceEEEEecCCCCceEEeEEEEceEecC
Q 012788 269 TTDVHIRRVLLQSSSGSSVAFGSEMS-----GGISNVQVEKIHLYDS-----LNGIEFRTTKGRGGYIRQIVISDAELYN 338 (456)
Q Consensus 269 s~ni~I~n~~~~~~~~~gi~igs~~~-----~~v~nI~v~n~~~~~~-----~~gi~iks~~g~~g~v~nI~~~ni~~~~ 338 (456)
|.|..|.|....+ ..|+-||...- .-.+|....|+.+.++ .+||.|.+- ...+=|-+.|+.|..
T Consensus 300 cdnfvidni~mvn--sagmligygvikg~ylsipqnfkln~i~ldn~~l~yklrgiqissg----natsfvaitn~~mkr 373 (464)
T PRK10123 300 CDNFVIDNIEMIN--SAGMLIGYGVIKGKYLSIPQNFKLNNIQLDNTHLAYKLRGIQISAG----NAVSFVALTNIEMKR 373 (464)
T ss_pred ccceEEecccccc--ccccEEEeeeeeccEecccccceeceEeecccccceeeeeeEeccC----CcceEEEEeeeehhh
Confidence 6777777777665 46666654310 1134444444444443 356655442 223444455555543
|
|
| >PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A | Back alignment and domain information |
|---|
Probab=88.13 E-value=3.7 Score=42.17 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=21.2
Q ss_pred cEEeEEEEeEEEECCcceEEEEecC------------CCCceEEeEEEEceEecCc
Q 012788 296 GISNVQVEKIHLYDSLNGIEFRTTK------------GRGGYIRQIVISDAELYNI 339 (456)
Q Consensus 296 ~v~nI~v~n~~~~~~~~gi~iks~~------------g~~g~v~nI~~~ni~~~~~ 339 (456)
.+.|++|.++++.++..+|.+..-. -+...-.++++.|..+.+.
T Consensus 308 qv~nv~I~~NT~In~~~~i~~g~g~~~~~~~~~~~~~i~s~~p~~~~~~nN~i~~~ 363 (425)
T PF14592_consen 308 QVKNVLIANNTFINCKSPIHFGAGSDEERKDVLPASNIRSARPINSTFANNIIYND 363 (425)
T ss_dssp --BSEEEES-EEES-SEEEESST-THHHHHHHHHHCT---B---SEEEES-EEE--
T ss_pred ccceeEEecceEEccCCceEEccccccccccccccccccccCCceEEeeCCeEEcC
Confidence 4788888888888887677665411 0123345777777666654
|
|
| >PLN02682 pectinesterase family protein | Back alignment and domain information |
|---|
Probab=87.87 E-value=32 Score=34.86 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=70.4
Q ss_pred eecccceEEEEEEEECCCCC-----CCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEE
Q 012788 205 PVYCSNVHIQNISVHAPPES-----PYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVL 278 (456)
Q Consensus 205 ~~~~~nv~i~n~~i~~~~~~-----~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~ 278 (456)
....+++..+|++|.+.... .....+.+. .++++.+.||.|....|-+..+. ..-.++||+
T Consensus 159 ~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~~-------------gRqyf~~C~ 225 (369)
T PLN02682 159 AVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLYDHL-------------GRHYFKDCY 225 (369)
T ss_pred EEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccceEECC-------------CCEEEEeeE
Confidence 34567899999999986421 112233332 47889999999999888776554 346789999
Q ss_pred EecCCCCeeEecccccCcEEeEEEEeEEEECCcce-EEEEecCCC--CceEEeEEEEceEecCc
Q 012788 279 LQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNG-IEFRTTKGR--GGYIRQIVISDAELYNI 339 (456)
Q Consensus 279 ~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~g-i~iks~~g~--~g~v~nI~~~ni~~~~~ 339 (456)
+.+. --+-.|. -...|++|++...... -.|. .+++ ...-....|.|+++...
T Consensus 226 IeG~--VDFIFG~------g~a~Fe~C~I~s~~~~~G~IT-A~~r~~~~~~~GfvF~~C~itg~ 280 (369)
T PLN02682 226 IEGS--VDFIFGN------GLSLYEGCHLHAIARNFGALT-AQKRQSVLEDTGFSFVNCKVTGS 280 (369)
T ss_pred Eccc--ccEEecC------ceEEEEccEEEEecCCCeEEe-cCCCCCCCCCceEEEEeeEecCC
Confidence 9874 2222332 3578999999753221 1222 2221 11124577888888763
|
|
| >PLN02698 Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=86.94 E-value=12 Score=39.73 Aligned_cols=137 Identities=11% Similarity=0.122 Sum_probs=75.7
Q ss_pred EeeccEEEEeEEEEeCCcc----e-EEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCC
Q 012788 183 ISSENVVVSNLTFLNAPAY----N-IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSG 257 (456)
Q Consensus 183 ~~~~nv~I~~v~i~ns~~~----~-i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg 257 (456)
...+++..+|++|+|+... . -.....+...+.+|+|... -|-+.... ..-.+++|+|...=|=|- |
T Consensus 267 v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~-----QDTLy~~~-~rqyy~~C~I~G~vDFIF---G 337 (497)
T PLN02698 267 ITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGY-----QDTLYAAA-LRQFYRECDIYGTIDFIF---G 337 (497)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecc-----cchheeCC-CcEEEEeeEEEeccceEe---c
Confidence 3578899999999997542 1 1223577888888888863 33343332 345788888886444331 2
Q ss_pred CCccccccCCCcccEEEEEEEEecCCC-----CeeEecc-cccCcEEeEEEEeEEEECCcceEE----EEecCCCC-ceE
Q 012788 258 WDEYGIAYGRPTTDVHIRRVLLQSSSG-----SSVAFGS-EMSGGISNVQVEKIHLYDSLNGIE----FRTTKGRG-GYI 326 (456)
Q Consensus 258 ~~~~g~~~~~~s~ni~I~n~~~~~~~~-----~gi~igs-~~~~~v~nI~v~n~~~~~~~~gi~----iks~~g~~-g~v 326 (456)
.-...++||++..... ..|.-.+ .....-..+.|.||++.+...... .++.=|+. ..-
T Consensus 338 -----------~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~y 406 (497)
T PLN02698 338 -----------NAAAVFQNCYLFLRRPHGKSYNVILANGRSDPGQNTGFSLQSCRIRTSSDFSPVKHSYSSYLGRPWKKY 406 (497)
T ss_pred -----------ccceeecccEEEEecCCCCCceEEEecCCCCCCCCceEEEEeeEEecCCcccccccccceeccCCCCCC
Confidence 3556788888763201 1222211 111234568888888876542111 11222222 234
Q ss_pred EeEEEEceEecCc
Q 012788 327 RQIVISDAELYNI 339 (456)
Q Consensus 327 ~nI~~~ni~~~~~ 339 (456)
+.+.|.+..|.+.
T Consensus 407 sr~vf~~s~l~~~ 419 (497)
T PLN02698 407 SRAIVMESYIDDA 419 (497)
T ss_pred ceEEEEecccCCc
Confidence 5666766666653
|
|
| >PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen | Back alignment and domain information |
|---|
Probab=85.32 E-value=46 Score=33.87 Aligned_cols=35 Identities=17% Similarity=0.110 Sum_probs=17.2
Q ss_pred ccEEEEeEEEEeCC-cceEEeecccceEEEEEEEEC
Q 012788 186 ENVVVSNLTFLNAP-AYNIHPVYCSNVHIQNISVHA 220 (456)
Q Consensus 186 ~nv~I~~v~i~ns~-~~~i~~~~~~nv~i~n~~i~~ 220 (456)
.+|++.|+.|...+ .-++.+....+++|.+|.+.+
T Consensus 121 ~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~g 156 (386)
T PF01696_consen 121 EGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFG 156 (386)
T ss_pred eeeEEEEEEEecCCccceeEEEecceEEEEeeEEec
Confidence 34555555555444 334444444555555555544
|
E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis. |
| >PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina | Back alignment and domain information |
|---|
Probab=84.34 E-value=18 Score=32.77 Aligned_cols=123 Identities=19% Similarity=0.186 Sum_probs=66.8
Q ss_pred ccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEec-CC-------ceEecCCC
Q 012788 186 ENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAM-GH-------DAISLKSG 257 (456)
Q Consensus 186 ~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-gD-------D~iai~sg 257 (456)
++|.|.+-+|.|...++|.+..... +..-...++|.|++..|.. |. .||.. +
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~------------------~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGIv~-s- 61 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDG------------------SYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGIVT-S- 61 (198)
T ss_pred CceEEecceeecccCceEEEEecCC------------------CCCccccccEEEECcEeecCCcCCCCceeeeEEe-c-
Confidence 4677777777777777666543310 0111134566666666653 21 12222 2
Q ss_pred CCccccccCCCcccEEEEEEEEecCCCCeeEeccc-----ccCcEEeEEEEeEEEECCcceEEEEecCCCCce-------
Q 012788 258 WDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSE-----MSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGY------- 325 (456)
Q Consensus 258 ~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~-----~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~------- 325 (456)
...|.+|+|+.|.+....||.-.-. ..+.-.-.+|+|+.|.++... +..+.+.|+
T Consensus 62 ----------GF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~NT~~r---~~~~~GtGYgv~N~L~ 128 (198)
T PF08480_consen 62 ----------GFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNTRKR---KSSPAGTGYGVINYLP 128 (198)
T ss_pred ----------cccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEeeeeec---ccCCCCceeEEEecCC
Confidence 2678888888888765555553211 122344488888888876422 222211221
Q ss_pred -EEeEEEEceEecCcce
Q 012788 326 -IRQIVISDAELYNINV 341 (456)
Q Consensus 326 -v~nI~~~ni~~~~~~~ 341 (456)
=..+.++|..+.+...
T Consensus 129 ~tHsFvLenNclYnN~a 145 (198)
T PF08480_consen 129 ETHSFVLENNCLYNNAA 145 (198)
T ss_pred CcceEEEEccceeccCc
Confidence 2567778877776543
|
Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO. |
| >PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina | Back alignment and domain information |
|---|
Probab=83.99 E-value=20 Score=32.45 Aligned_cols=47 Identities=19% Similarity=0.371 Sum_probs=31.1
Q ss_pred cccEEEEEEEEecCCCC--eeE-ecccccCcEEeEEEEeEEEECCcc-eEEE
Q 012788 269 TTDVHIRRVLLQSSSGS--SVA-FGSEMSGGISNVQVEKIHLYDSLN-GIEF 316 (456)
Q Consensus 269 s~ni~I~n~~~~~~~~~--gi~-igs~~~~~v~nI~v~n~~~~~~~~-gi~i 316 (456)
.+||.|.++.|... +. .+. +|.....++.|.+|||++|.+..+ |+.-
T Consensus 33 a~nVhIhhN~fY~t-Gtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~ 83 (198)
T PF08480_consen 33 AKNVHIHHNIFYDT-GTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQ 83 (198)
T ss_pred cccEEEECcEeecC-CcCCCCceeeeEEeccccccEEEeeeecccccceEEE
Confidence 57999999999854 21 111 111122478899999999999854 4443
|
Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO. |
| >PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue | Back alignment and domain information |
|---|
Probab=83.60 E-value=38 Score=31.58 Aligned_cols=129 Identities=14% Similarity=0.075 Sum_probs=84.4
Q ss_pred eccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCcc-CEEEEecEEecCCceEecCCCCCcccc
Q 012788 185 SENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSD-NVCIEDCIIAMGHDAISLKSGWDEYGI 263 (456)
Q Consensus 185 ~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~-nV~I~n~~i~~gDD~iai~sg~~~~g~ 263 (456)
-+..+|+|+.|-.+...+||... +.+|+|+....- .-|.+.+.... .++|.+.-.+..+|-|-=..+
T Consensus 60 e~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwedV----cEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng------ 127 (215)
T PF03211_consen 60 EDGATLKNVIIGANQADGIHCKG--SCTLENVWWEDV----CEDAATFKGDGGTVTIIGGGARNASDKVFQHNG------ 127 (215)
T ss_dssp ETTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEEEEE-S------
T ss_pred cCCCEEEEEEEcCCCcCceEEcC--CEEEEEEEeccc----ceeeeEEcCCCceEEEeCCcccCCCccEEEecC------
Confidence 45789999998777778999887 889999998864 46888887766 889999998887666543333
Q ss_pred ccCCCcccEEEEEEEEecCCCCeeEecccc---c--CcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEc
Q 012788 264 AYGRPTTDVHIRRVLLQSSSGSSVAFGSEM---S--GGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISD 333 (456)
Q Consensus 264 ~~~~~s~ni~I~n~~~~~~~~~gi~igs~~---~--~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~n 333 (456)
.-.+.|.|.+..+ .|--+-|-. . +.-++|.+++........-+.|-...++...|+++.+..
T Consensus 128 -----~Gtv~I~nF~a~d---~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD~ati~~~~~~~ 194 (215)
T PF03211_consen 128 -----GGTVTIKNFYAED---FGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGDTATISNSCIKG 194 (215)
T ss_dssp -----SEEEEEEEEEEEE---EEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTTTEEEEEEEEEE
T ss_pred -----ceeEEEEeEEEcC---CCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCCeEEEEEEEecC
Confidence 4568888876653 232222211 1 234567777665544333455666666777788877776
|
It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A. |
| >PLN02665 pectinesterase family protein | Back alignment and domain information |
|---|
Probab=82.99 E-value=34 Score=34.69 Aligned_cols=115 Identities=12% Similarity=0.119 Sum_probs=72.0
Q ss_pred eecccceEEEEEEEECCCCC-----CCCceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEE
Q 012788 205 PVYCSNVHIQNISVHAPPES-----PYTVGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVL 278 (456)
Q Consensus 205 ~~~~~nv~i~n~~i~~~~~~-----~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~ 278 (456)
...++++..+|++|.|.... .....+.+. ......+.||.|....|-+.... ..-.++||+
T Consensus 150 ~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~~-------------gr~yf~~Cy 216 (366)
T PLN02665 150 IVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDDK-------------GRHFFKDCY 216 (366)
T ss_pred EEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccceeEeCC-------------CCEEEEeeE
Confidence 35678899999999996421 111233332 46889999999999888776544 346689999
Q ss_pred EecCCCCeeEecccccCcEEeEEEEeEEEECCcce-EEEEecCCCC--ceEEeEEEEceEecCcc
Q 012788 279 LQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNG-IEFRTTKGRG--GYIRQIVISDAELYNIN 340 (456)
Q Consensus 279 ~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~g-i~iks~~g~~--g~v~nI~~~ni~~~~~~ 340 (456)
+.+. --+=.|. -...|++|++.-...+ ...-|.+++. ..-....|.|+++....
T Consensus 217 IeG~--VDFIFG~------g~a~fe~C~i~s~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~ 273 (366)
T PLN02665 217 IEGT--VDFIFGS------GKSLYLNTELHVVGDGGLRVITAQARNSEAEDSGFSFVHCKVTGTG 273 (366)
T ss_pred Eeec--cceeccc------cceeeEccEEEEecCCCcEEEEcCCCCCCCCCceEEEEeeEEecCC
Confidence 9874 2222332 2468899999865443 2222322211 12234679999988754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 456 | ||||
| 3jur_A | 448 | The Crystal Structure Of A Hyperthermoactive Exopol | 2e-24 | ||
| 2uve_A | 608 | Structure Of Yersinia Enterocolitica Family 28 Exop | 2e-13 | ||
| 1bhe_A | 376 | Polygalacturonase From Erwinia Carotovora Ssp. Caro | 8e-11 |
| >pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 | Back alignment and structure |
|
| >pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase Length = 608 | Back alignment and structure |
|
| >pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 | Back alignment and structure |
|---|
Score = 370 bits (952), Expect = e-125
Identities = 102/422 (24%), Positives = 170/422 (40%), Gaps = 56/422 (13%)
Query: 37 RPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHL 96
V++ +FGA GDG+T + +F+ AI + + +GG +L VP G +LTG +L S++
Sbjct: 24 PDREVNLLDFGARGDGRTDCSESFKRAI---EELSKQGGGRLIVPEGVFLTGPIHLKSNI 80
Query: 97 TLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTI 156
L ++ I +P + V R + Y L+ +V +TG +G +
Sbjct: 81 ELHVKGT--IKFIPDPERYLPVV----LTRFEGIELYNYSPLVYALDCENVAITG-SGVL 133
Query: 157 DGQG--SVWWDWFSSQSL----------------------------------NYSRPHLV 180
DG WW W + +Y RP V
Sbjct: 134 DGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFV 193
Query: 181 EFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCI 240
+F NV+V + +N+P + IHPV NV I+NI + + P GI P+S + I
Sbjct: 194 QFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYMLI 251
Query: 241 EDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSS-VAFGSEMSGGISN 299
E C G D++ +KSG D G G P+ + +R L+ S + + GSEMSGG+ N
Sbjct: 252 EKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRN 311
Query: 300 VQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNI-NVAFGACGNCGSHPDDDFD 358
V + + +T RGGY+ I D N+ + +
Sbjct: 312 VVARNNVYMNVERALRLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNE-----E 366
Query: 359 PDALPAIDQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLS-INPGSYNSWECSNI 417
+ LP + + K++ T A G++ +I +S+ + + +
Sbjct: 367 GEYLPVVRSVFVKNLKATGGKYAVRIEGLENDYVKDILISDTIIEGAKISVLLEFGQLGM 426
Query: 418 HG 419
Sbjct: 427 EN 428
|
| >2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 | Back alignment and structure |
|---|
Score = 370 bits (951), Expect = e-123
Identities = 99/481 (20%), Positives = 177/481 (36%), Gaps = 72/481 (14%)
Query: 16 AILINGEVSDGQCDDQPTLDPRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGG 75
A +G +S +P V++ +FGA+ DGKTLNT A Q AI + K G
Sbjct: 132 AQYADGSLSVASKPITAKTSAKPQIVNVRDFGAIDDGKTLNTKAIQQAID-----SCKPG 186
Query: 76 AQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRY 135
++ +P+G + +G+ L S +TL L+ GA++LGS+NP + L Y R
Sbjct: 187 CRVEIPAGTYKSGALWLKSDMTLNLQAGAILLGSENPDDYPAGYRLYPYST-----IERP 241
Query: 136 KSLINGY--------MLRDVVVTGDNGTIDGQGSVWWDWF-------------------- 167
SLIN R++ +TG +G IDG G +
Sbjct: 242 ASLINAIDPNNSKPGTFRNIRITG-SGVIDGNGWLRAKTAEITDELGRSLPQYVASKNSK 300
Query: 168 ---------------------SSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPV 206
+ R L+ ENV ++ T N + I +
Sbjct: 301 VHEDGILAKNQVEKAVSDGMDLKNAYGQRRSSLMTLRGVENVYLAGFTVRNPAFHGIMNL 360
Query: 207 YCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYG 266
NV + ++ GI +S NV + + G D I+ +G E
Sbjct: 361 ENHNVVANGLIH-QTYDANNGDGIEFGNSQNVMVFNNFFDTGDDCINFAAGTGEKAQ-EQ 418
Query: 267 RPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYI 326
P + + G ++ GS I ++ E +Y + G+ ++T GG
Sbjct: 419 EPMKGAWLFNNYFRMGHG-AIVTGSHTGAWIEDILAENNVMYLTDIGLRAKSTSTIGGGA 477
Query: 327 RQIVISDAELYNI-NVAFGACGN-CGSHPDDDFDPDALPA------IDQITFKDIIGTNI 378
R + + + ++ + S+ + D+ P +PA + +T + G N
Sbjct: 478 RNVTFRNNAMRDLAKQVMVMTLDYADSNANIDYPPAKIPAQFYDFTLKNVTVDNSTGKNP 537
Query: 379 TIAGNFTGIQEAPFANICLSNISLS-INPGSYNSWECSNIHGSSESVFPEPCPELENSSS 437
+I +A + ++N+ L+ + P + + S + + + P +
Sbjct: 538 SIEIKGDTANKAWHRLVHVNNVQLNNVTPTAISDLRDSEFNKVTFTELRGDTPWHFSEVK 597
Query: 438 N 438
N
Sbjct: 598 N 598
|
| >1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 | Back alignment and structure |
|---|
Score = 352 bits (906), Expect = e-119
Identities = 79/388 (20%), Positives = 155/388 (39%), Gaps = 42/388 (10%)
Query: 47 GAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGK---WLTGSFNLTSHLTLFLEKG 103
+ + T Q A+ + D+G A + + +G +L+G +L S ++L ++KG
Sbjct: 16 TTLKADSSTATSTIQKAL----NNCDQGKA-VRLSAGSTSVFLSGPLSLPSGVSLLIDKG 70
Query: 104 AVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSV- 162
+ N ++ PS ++ G+ + I + + G GTIDGQG V
Sbjct: 71 VTLRAVNNAKSFE---NAPSSCGVVDKNGKGCDAFITAVSTTNSGIYG-PGTIDGQGGVK 126
Query: 163 -------WWDWF---SSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVH 212
WW+ + L + P L++ S+N + N++ +N+P +++
Sbjct: 127 LQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFT 186
Query: 213 IQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDV 272
++ P + T GI P SS N+ I IA G D +++K+ T ++
Sbjct: 187 AWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKG------RAETRNI 240
Query: 273 HIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVIS 332
I + G ++ GSE + G+ NV V+ + + + NG+ ++ K G + + S
Sbjct: 241 SILHNDFGTGHG--MSIGSE-TMGVYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYS 297
Query: 333 DAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQEAPF 392
+ + N+ + +P ITFKD+ G
Sbjct: 298 NVVMKNVAKPIVIDTVYEKK-----EGSNVPDWSDITFKDVTSETKG-VVVLNGENAKKP 351
Query: 393 ANICLSNISLSINPGSYNSWECSNIHGS 420
+ + N+ L+ + W+ N++
Sbjct: 352 IEVTMKNVKLTSDST----WQIKNVNVK 375
|
| >1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 | Back alignment and structure |
|---|
Score = 227 bits (580), Expect = 5e-70
Identities = 63/419 (15%), Positives = 138/419 (32%), Gaps = 66/419 (15%)
Query: 36 PRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSH 95
+ +I +GAV D T A +A A K G +Y+PSG + L +
Sbjct: 16 GATKTCNILSYGAVADNSTDVGPAITSAWA-----ACKSGGLVYIPSGN-----YALNTW 65
Query: 96 LTLFLEKGAV------ILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVV 149
+TL I + S ++ +
Sbjct: 66 VTLTGGSATAIQLDGIIYRTGTASGN-------------------MIAVTDTTDFELFSS 106
Query: 150 TGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCS 209
T G + G G V+ + ++ + V ++ ++APA++ CS
Sbjct: 107 TS-KGAVQGFGYVYH------AEGTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCS 159
Query: 210 NVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPT 269
+ + N+++ GI S N+ + D + + +++KS
Sbjct: 160 DGEVYNMAIRG-GNEGGLDGIDVWGS-NIWVHDVEVTNKDECVTVKSP-----------A 206
Query: 270 TDVHIRRVLLQSSSGSSVAFGSE-MSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQ 328
++ + + + A GS ++++ ++ + S ++ G G +
Sbjct: 207 NNILVESI--YCNWSGGCAMGSLGADTDVTDIVYRNVYTWSSNQMYMIKSNGGS-GTVSN 263
Query: 329 IVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT----IAGNF 384
+++ + + + G S D + ++ IT K+ GT
Sbjct: 264 VLLENFIGHGNAYSLDIDGYWSSMTAV--AGDGVQ-LNNITVKNWKGTEANGATRPPIRV 320
Query: 385 TGIQEAPFANICLSNISLSINPGSYNSWECSNIHGSSESVFPEPCPELENSSSNSSSTC 443
AP ++ L +I++ GS + C + +GS + ++S ++
Sbjct: 321 VCSDTAPCTDLTLEDIAIWTESGSSELYLCRSAYGSGYCLKDSSSHTSYTTTSTVTAAP 379
|
| >1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 | Back alignment and structure |
|---|
Score = 221 bits (565), Expect = 1e-68
Identities = 56/392 (14%), Positives = 123/392 (31%), Gaps = 54/392 (13%)
Query: 38 PHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLT 97
+ + D T T A A + + VP+G L + LTS
Sbjct: 15 GATFASASPIEARDSCTFTTAAAAKAGK--AKCSTITLNNIEVPAGTTLDLT-GLTSGTK 71
Query: 98 LFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDN-GTI 156
+ E G + + + ++G + VTG + I
Sbjct: 72 VIFE-GTTTFQYEEWAGPLIS--------------------MSG---EHITVTGASGHLI 107
Query: 157 DGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNI 216
+ G+ WWD + +P ++ ++ L N P V +++ ++
Sbjct: 108 NCDGARWWDGKGTS--GKKKPKFFYAHGLDSSSITGLNIKNTPLMAFS-VQANDITFTDV 164
Query: 217 SVHAPPESPY----TVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDV 272
+++ T +S V I + D +++ SG ++
Sbjct: 165 TINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHNQDDCLAVNSG------------ENI 212
Query: 273 HIRRVLLQSSSGSSV-AFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVI 331
G S+ + G + + NV +E + +S N + +T G G + +I
Sbjct: 213 WFTGGTCIGGHGLSIGSVGDRSNNVVKNVTIEHSTVSNSENAVRIKTISGATGSVSEITY 272
Query: 332 SDAELYNI-NVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGN-FTGIQE 389
S+ + I + + + + I + + + G+ + A +
Sbjct: 273 SNIVMSGISDYGVVIQQDYEDGKPTGKPTNGVT-IQDVKLESVTGSVDSGATEIYLLCGS 331
Query: 390 APFANICLSNISLSINPGSYNSWECSNIHGSS 421
++ ++ ++ G S C N +
Sbjct: 332 GSCSDWTWDDVKVT---GGKKSTACKNFPSVA 360
|
| >1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 | Back alignment and structure |
|---|
Score = 200 bits (511), Expect = 8e-61
Identities = 50/284 (17%), Positives = 100/284 (35%), Gaps = 27/284 (9%)
Query: 146 DVVVTGDN-GTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIH 204
D+ +TG + +I+G GS WWD ++P S N V+S L +N+P
Sbjct: 73 DLTITGASGHSINGDGSRWWDGEGGNG-GKTKPKFFAAHSLTNSVISGLKIVNSPVQVFS 131
Query: 205 PVYCSNVHIQNISVHAPPESPY----TVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDE 260
+ +++I++ T +S V I + D +++ SG
Sbjct: 132 VAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNSGE-- 189
Query: 261 YGIAYGRPTTDVHIRRVLLQSSSGSSV-AFGSEMSGGISNVQVEKIHLYDSLNGIEFRTT 319
+++ G S+ + G + NV + +S NG+ +T
Sbjct: 190 ----------NIYFSGGYCSGGHGLSIGSVGGRSDNTVKNVTFVDSTIINSDNGVRIKTN 239
Query: 320 KGRGGYIRQIVISDAELYNI-NVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNI 378
G + + D L +I N + D P I ++ G+ +
Sbjct: 240 IDTTGSVSDVTYKDITLTSIAKYGIVVQQN---YGDTSSTPTTGVPITDFVLDNVHGSVV 296
Query: 379 T-IAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGSS 421
+ ++ +++S+S G S +C+N+ +
Sbjct: 297 SSGTNILISCGSGSCSDWTWTDVSVS---GGKTSSKCTNVPSGA 337
|
| >1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 | Back alignment and structure |
|---|
Score = 194 bits (494), Expect = 2e-58
Identities = 73/376 (19%), Positives = 127/376 (33%), Gaps = 51/376 (13%)
Query: 54 TLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPS 113
T + A + S +D + + VP+G+ L S + T+ E G G +
Sbjct: 2 TCTFTSASEASESISSCSDVVLSSIEVPAGETLDLS-DAADGSTITFE-GTTSFGYKE-- 57
Query: 114 HWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDN-GTIDGQGSVWWDWFSSQSL 172
W G I G+ D+ VT + IDG GS WWD +
Sbjct: 58 -WK--------GPLIRFGGK------------DLTVTMADGAVIDGDGSRWWDSKGTNG- 95
Query: 173 NYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPY----TV 228
++P + E+ + N P I V +NVH+ + ++ T
Sbjct: 96 GKTKPKFMYIHDVEDSTFKGINIKNTPVQAIS-VQATNVHLNDFTIDNSDGDDNGGHNTD 154
Query: 229 GIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSV- 287
G S V I + D I++ SG + G S+
Sbjct: 155 GFDISESTGVYISGATVKNQDDCIAINSG------------ESISFTGGTCSGGHGLSIG 202
Query: 288 AFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNI-NVAFGAC 346
+ G + NV + + +S NG+ +T G + +I S+ +L I +
Sbjct: 203 SVGGRDDNTVKNVTISDSTVSNSANGVRIKTIYKETGDVSEITYSNIQLSGITDYGIVIE 262
Query: 347 GNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGI-QEAPFANICLSNISLSIN 405
+ + +P I +T + GT A + + ++ S + LS
Sbjct: 263 QDYENGSPTGTPSTGIP-ITDVTVDGVTGTLEDDATQVYILCGDGSCSDWTWSGVDLS-- 319
Query: 406 PGSYNSWECSNIHGSS 421
G S +C N+ +
Sbjct: 320 -GGKTSDKCENVPSGA 334
|
| >2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 | Back alignment and structure |
|---|
Score = 191 bits (486), Expect = 4e-57
Identities = 65/359 (18%), Positives = 118/359 (32%), Gaps = 50/359 (13%)
Query: 71 ADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIEL 130
+ VP+G L + L S T+ + G G + +
Sbjct: 19 TSIILNGIVVPAGTTLDMTG-LKSGTTVTFQ-GKTTFGYKEWEGPLIS------------ 64
Query: 131 PGRRYKSLINGYMLRDVVVTGDN-GTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVV 189
+G ++ + G + +ID QGS WWD S ++P S ++
Sbjct: 65 --------FSG---TNININGASGHSIDCQGSRWWDSKGSNG-GKTKPKFFYAHSLKSSN 112
Query: 190 VSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPY----TVGIVPDSSDNVCIEDCII 245
+ L LN P + + + ++ + T SS V I +
Sbjct: 113 IKGLNVLNTPVQAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANV 172
Query: 246 AMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSV-AFGSEMSGGISNVQVEK 304
D +++ SG T++ G S+ + G + V +
Sbjct: 173 KNQDDCLAINSG------------TNITFTGGTCSGGHGLSIGSVGGRSDNTVKTVTISN 220
Query: 305 IHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNI-NVAFGACGNCGSHPDDDFDPDALP 363
+ +S NG+ +T G G + + S L NI + + + +P
Sbjct: 221 SKIVNSDNGVRIKTVSGATGSVSGVTYSGITLSNIAKYGIVIEQDYENGSPTGTPTNGVP 280
Query: 364 AIDQITFKDIIGTNITIAGNFTGI-QEAPFANICLSNISLSINPGSYNSWECSNIHGSS 421
I +T I G+ + N + +N S +S++ G S +CSNI S
Sbjct: 281 -ITGLTLSKITGSVASSGTNVYILCASGACSNWKWSGVSVT---GGKKSTKCSNIPSGS 335
|
| >1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 | Back alignment and structure |
|---|
Score = 192 bits (489), Expect = 3e-56
Identities = 49/425 (11%), Positives = 112/425 (26%), Gaps = 48/425 (11%)
Query: 31 QPTLDPRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSF 90
+ + +FGA G+ + ++ A Q AI + G L +P+G +
Sbjct: 13 VAPTQQDVNYDLVDDFGANGNDTSDDSNALQRAINAIS--RKPNGGTLLIPNGTYHFLGI 70
Query: 91 NLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVT 150
+ S++ + +E +I + N + +
Sbjct: 71 QMKSNVHIRVESDVIIKPTWNGDGKNHRLFEVGVNNIVR--------------------- 109
Query: 151 GDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTF-----------LNAP 199
N + G G + + + N +SN T ++
Sbjct: 110 --NFSFQGLG--NGFLVDFKDSRDKNLAVFKLGDVRNYKISNFTIDDNKTIFASILVDVT 165
Query: 200 AYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWD 259
N + N I+ I + I +DN+ + G A+ +++
Sbjct: 166 ERNGRLHWSRNGIIERIKQNNALFG--YGLIQTYGADNILFRNLHSE-GGIALRMETDNL 222
Query: 260 EYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTT 319
++ + S ++V FG +VQV + + +
Sbjct: 223 LMKNYKQGGIRNIFADNIRC-SKGLAAVMFGPH-FMKNGDVQVTNVSSVSCGSAVRS--- 277
Query: 320 KGRGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT 379
G++ +D + G +
Sbjct: 278 --DSGFVELFSPTDEVHTRQSWKQAVESKLGRGCAQTPYARGNGGTRWAARVTQKDACLD 335
Query: 380 IAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGSSESVFPEPCPELENSSSNS 439
A GI+ F + + +++ + + + +S + C + S
Sbjct: 336 KAKLEYGIEPGSFGTVKVFDVTARFGYNADLKQDQLDYFSTSNPMCKRVCLPTKEQWSKQ 395
Query: 440 SSTCF 444
Sbjct: 396 GQIYI 400
|
| >1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 | Back alignment and structure |
|---|
Score = 180 bits (457), Expect = 9e-53
Identities = 53/294 (18%), Positives = 106/294 (36%), Gaps = 31/294 (10%)
Query: 145 RDVVVTGDN-GTIDGQGSVWWDWFSSQSLNYSRPH--LVEFISSENVVVSNLTFLNAPAY 201
++ +TG + IDG G +WD S S + +P +V ++ N ++NL N P +
Sbjct: 69 SNITITGASGHVIDGNGQAYWDGKGSNSNSNQKPDHFIVVQKTTGNSKITNLNIQNWPVH 128
Query: 202 NIHPVYCSNVHIQNISVHA------------PPESPYTVGIVPDSSDNVCIEDCIIAMGH 249
S + I + + P + T G SSD+V +++ +
Sbjct: 129 CFDITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYNQD 188
Query: 250 DAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSV-AFGSEMSGGISNVQVEKIHLY 308
D +++ SG T++ + + G S+ + G + + VQ +
Sbjct: 189 DCVAVTSG------------TNIVVSNMYCSGGHGLSIGSVGGKSDNVVDGVQFLSSQVV 236
Query: 309 DSLNGIEFRTTKGRGGYIRQIVISDAELYNI-NVAFGACGNCGSHPDDDFDPDALPAIDQ 367
+S NG ++ G G I + + L NI + + + + I
Sbjct: 237 NSQNGCRIKSNSGATGTINNVTYQNIALTNISTYGVDVQQDYLNGGPTGKPTNGVK-ISN 295
Query: 368 ITFKDIIGTNIT-IAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGS 420
I F + GT + F + + S +++ + + +N S
Sbjct: 296 IKFIKVTGTVASSAQDWFILCGDGSCSGFTFSGNAITGGGKTSSCNYPTNTCPS 349
|
| >2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 | Back alignment and structure |
|---|
Score = 166 bits (421), Expect = 1e-45
Identities = 63/385 (16%), Positives = 116/385 (30%), Gaps = 53/385 (13%)
Query: 35 DPRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKS----FADKGGAQLYVPSGK------ 84
D VS+ +F G + ++ YL++ + GG + +P+G
Sbjct: 35 DVLDERVSLWDFHCDPSGNVIQPGPNVDSRQYLQAAIDYVSSNGGGTITIPAGYTWYLGS 94
Query: 85 -------WLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKS 137
+G L S++ L +E I S P + G
Sbjct: 95 YGVGGIAGHSGIIQLRSNVNLNIE--GRIHLSPFFDLK----PFQVF------VGFDNGD 142
Query: 138 LINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLN 197
+ L + + G +G +D G + + V F S N V+ +TF N
Sbjct: 143 PASSGNLENCHIYG-HGVVDFGGYEFGASS-------QLRNGVAFGRSYNCSVTGITFQN 194
Query: 198 AP-AYNIHP---VYCSNVHIQNISVHAPPESPYTV--GIVPDSSDNVCIEDCIIAMGHDA 251
+ I Y SN +++ S V + +E C +M
Sbjct: 195 GDVTWAITLGWNGYGSNCYVRKCRFINLVNSSVNADHSTVYVNCPYSGVESCYFSMSSSF 254
Query: 252 ---ISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLY 308
I+ ++ Y T + + R + + + GS N+QVE
Sbjct: 255 ARNIACSVQLHQHDTFYRGSTVNGYCRGAYVVMHAAEAAGAGSY----AYNMQVENNIAV 310
Query: 309 DSLNG--IEFRTTKGRGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAID 366
+ T G++ +++S + +I G+ D D +
Sbjct: 311 IYGQFVILGSDVTATVSGHLNDVIVSGNIV-SIGERAAFSAPFGAFIDIGPDNSGASNVQ 369
Query: 367 QITFKDIIGTNITIAGNFTGIQEAP 391
I + G + N T
Sbjct: 370 DIQRVLVTGNSFYAPANITDSAAIT 394
|
| >1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 1e-45
Identities = 48/291 (16%), Positives = 96/291 (32%), Gaps = 37/291 (12%)
Query: 146 DVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIH- 204
+ G + DG G+++WD + + +PH I + LN+PA I
Sbjct: 67 GINFVGADHIFDGNGALYWDGKGTNN-GTHKPHPFLKIKG-SGTYKKFEVLNSPAQAISV 124
Query: 205 -----PVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWD 259
+ + + + + T G S++NV I++CI+ D I++ G
Sbjct: 125 GPTDAHLTLDGITVDDFAGDTKNLGHNTDGFDV-SANNVTIQNCIVKNQDDCIAINDG-- 181
Query: 260 EYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGG-ISNVQVEKIHLYDSLNGIEFRT 318
++ G S+ GS +G +SNV ++ + S+ G+ +
Sbjct: 182 ----------NNIRFENNQCSGGHGISI--GSIATGKHVSNVVIKGNTVTRSMYGVRIKA 229
Query: 319 -TKGRGGYIRQIVISDAELYNINVAFGACGNC----GSHPDDDFDPDALPAIDQITFKDI 373
+ + + I S+PDD +P + F
Sbjct: 230 QRTATSASVSGVTYDANTISGI------AKYGVLISQSYPDDVGNPGTGAPFSDVNFTGG 283
Query: 374 IGT-NITIAGNFTGIQEAP-FANICLSNISLSINPGSYNSWECSNIHGSSE 422
T + A ++ N S ++++ + + I G
Sbjct: 284 ATTIKVNNAATRVTVECGNCSGNWNWSQLTVTGGKAGTIKSDKAKITGGQY 334
|
| >2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 1e-42
Identities = 49/387 (12%), Positives = 118/387 (30%), Gaps = 32/387 (8%)
Query: 41 VSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFL 100
++ +FGA+GDG + + + Q AI + GG +Y+P+G++ + L L
Sbjct: 3 YNVKDFGALGDGVSDDRASIQAAI---DAAYAAGGGTVYLPAGEYRVSAAGEPGDGCLML 59
Query: 101 EKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQG 160
+ G + G+ + + + Y + + +RD+ + G+ G+
Sbjct: 60 KDGVYLAGAGMGETVIKLIDGSDQ-KITGMVRSAYGEETSNFGMRDLTLDGNRDNTSGKV 118
Query: 161 SVWWDWFSSQSLNYSRPHLVE--------------FISSENVVVSNLTFLNAPAYNIHPV 206
W++ + R +E + N+ + + +
Sbjct: 119 DGWFNGYIPGGDGADRDVTIERVEVREMSGYGFDPHEQTINLTIRDSVAHDNGLDGFVAD 178
Query: 207 YCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYG 266
Y + +N +A + +V + D V + G + ++ G ++ +
Sbjct: 179 YLVDSVFENNVAYAN--DRHGFNVVTSTHDFVMTNNVAYGNGSSGLVVQRGLEDLALPS- 235
Query: 267 RPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYI 326
++ I ++ V + N + + +G+ R + I
Sbjct: 236 ----NILIDGGAYYDNAREGVLLKMTSDITLQNADIH----GNGSSGV--RVYGAQDVQI 285
Query: 327 RQIVISDAELYNINVAFGACGNCGSH-PDDDFDPDALPAIDQITFKDIIGTNITIAGNFT 385
I D + + I+ T + I
Sbjct: 286 LDNQIHDNAQAAAVPEVLLQSFDDTAGASGTYYTTLNTRIEGNTISGSANSTYGIQERND 345
Query: 386 GIQEAPFANICLSNISLSINPGSYNSW 412
G + + ++ + I +S
Sbjct: 346 GTDYSSLIDNDIAGVQQPIQLYGPHST 372
|
| >3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 | Back alignment and structure |
|---|
Score = 146 bits (368), Expect = 3e-38
Identities = 61/397 (15%), Positives = 131/397 (32%), Gaps = 59/397 (14%)
Query: 35 DPRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTS 94
+ + VS+ +GA GDG T + AF+ AI + G +YVP G ++
Sbjct: 17 ELKQFGVSVKTYGAKGDGVTDDIRAFEKAI--------ESGFPVYVPYGTFMVSR----- 63
Query: 95 HLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNG 154
+ L V+ G+ V+ + S GRG L + N + +
Sbjct: 64 --GIKLPSNTVLTGAGK--RNAVIRFMDSVGRGESLMYNENVTTGNEN------IFLSSF 113
Query: 155 TIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQ 214
T+DG S + SR + + NV + ++ ++ ++ ++
Sbjct: 114 TLDGNNKRLGQGIS--GIGGSRESNLSIRACHNVYIRDIEAVDC------TLHGIDITCG 165
Query: 215 NISVHAPPESPYTVGIVPDSSDNVCIEDC-IIAMGHDAISLKSGWDEYGIAYGRPTTDVH 273
+ + P+ S+N+ IE+C G D I+ ++
Sbjct: 166 GLDYPYLGDG----TTAPNPSENIWIENCEATGFGDDGITTHHS------------QYIN 209
Query: 274 IRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISD 333
I ++ G E+ G +V + GIE G I I+
Sbjct: 210 ILNCYSHDPRLTANCNGFEIDDGSRHVVLSNNRSKGCYGGIEI-KAHGDAPAAYNISING 268
Query: 334 AELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFT------GI 387
++ + G H P ++ A + I +++ F +
Sbjct: 269 HMSVEDVRSY-NFRHIGHHAAT--APQSVSAKN-IVASNLVSIRPNNKRGFQDNATPRVL 324
Query: 388 QEAPFANICLSNISLSINPGSYNSWECSNIHGSSESV 424
+ + + ++ ++ + + + ++ + +
Sbjct: 325 AVSAYYGVVINGLTGYTDDPNLLTETVVSVQFRARNC 361
|
| >1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 6e-24
Identities = 37/377 (9%), Positives = 93/377 (24%), Gaps = 81/377 (21%)
Query: 43 ITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGS----FNLTSHLTL 98
+ N++A + + G + +S +
Sbjct: 169 FENSSTKPQPGSPNSIAPAPGRVLGLNTTSAS--TVVFNPGVYYFTGHDHMVLSSSVTWV 226
Query: 99 FLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDG 158
+ GA + G+ + +V +G +G + G
Sbjct: 227 YFAPGAYVKGA----------------------------VEFLSTASEVKASG-HGVLSG 257
Query: 159 QGSVWWDWFS--------SQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCS- 209
+ VW+ + + SS+ V++ +T P ++ S
Sbjct: 258 EQYVWYADPDEGYQKASGANNNGLRMWRGTLGNSSQTFVLNGVTVSAPPFNSMDWSGNSL 317
Query: 210 ---NVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYG 266
+ + T G+ + ++D D + +
Sbjct: 318 DLITCRVDDYKQ-VGAFYGQTDGL--EMYPGTILQDVFYHTDDDGLKMYY---------- 364
Query: 267 RPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYI 326
++V R +++ S + V NV + + +
Sbjct: 365 ---SNVTARNIVMWKESVAPVVEFGWTPRNTENVLFDNVDVIH---------QAYANAGN 412
Query: 327 RQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTG 386
+ Y + + + + + IT+ + + + F
Sbjct: 413 NPGIFGAVNNYLYAPDGLSSNHSTGNSN--------MTVRNITWSNFRAEGSS-SALFRI 463
Query: 387 IQEAPFANICLSNISLS 403
NI + N+S+
Sbjct: 464 NPIQNLDNISIKNVSIE 480
|
| >2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514 | Back alignment and structure |
|---|
Score = 59.2 bits (142), Expect = 1e-09
Identities = 42/162 (25%), Positives = 64/162 (39%), Gaps = 18/162 (11%)
Query: 35 DPRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTS 94
D ++SI +FG + DG T N A QNAI + S G +L++P+ G +
Sbjct: 46 DKNKEAISILDFGVIDDGVTDNYQAIQNAIDAVASLP--SGGELFIPASNQAVGYIVGS- 102
Query: 95 HLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNG 154
TL + G I G S L + Y S G LR++ VTG N
Sbjct: 103 --TLLIPGGVNIRGVGKASQLRAKSGLTGSVLRLS-----YDSDTIGRYLRNIRVTG-NN 154
Query: 155 TIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFL 196
T +G +++ S V +NV+V+ +
Sbjct: 155 TCNGID----TNITAED---SVIRQVYGWVFDNVMVNEVETA 189
|
| >3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 | Back alignment and structure |
|---|
Score = 48.5 bits (114), Expect = 3e-06
Identities = 36/237 (15%), Positives = 67/237 (28%), Gaps = 32/237 (13%)
Query: 32 PTLDPRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFAD------KGGAQLYVPSGKW 85
P ++ +GA GDG T +T A Q AI A +Y P G +
Sbjct: 41 GNPGGYPVFRNVKNYGAKGDGNTDDTAAIQAAINAGGRCGQGCDSTTTQPALVYFPPGTY 100
Query: 86 -LTGSFNLTSHLTLFLEKG--AVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGY 142
++ + L + +L + N S ++D P G +
Sbjct: 101 KVSSPLVVLYQTQLIGDAKNLPTLLAAPNFSGIALIDADPYLAGGAQ---YYVNQNNFFR 157
Query: 143 MLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYN 202
+R+ V+ + G W ++ S N+V T
Sbjct: 158 SVRNFVIDLRQVSGSATGIHWQVSQAT--------------SLINIVFQMSTAAGNQHQG 203
Query: 203 IHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWD 259
I S + ++ + + + + + AI+ W
Sbjct: 204 IFMENGSGGFLGDLVFN------GGNIGATFGNQQFTVRNLTFNNANTAINAIWNWG 254
|
| >3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 | Back alignment and structure |
|---|
Score = 45.8 bits (107), Expect = 3e-05
Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 7/109 (6%)
Query: 15 SAILINGEVSDGQCDDQPTLDPRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKG 74
+L + + Q T VS+ GA GDG T +T A +N G
Sbjct: 375 GVLLDSTGRIVSKSHPQYTGYAPSDFVSVRSQGAKGDGHTDDTQAIKNVFAKY-----AG 429
Query: 75 GAQLYVPSGKW-LTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLP 122
++ +G + +T + + + + E +VI+G+ D +P P
Sbjct: 430 CKIIFFDAGTYIVTDTIQIPAGTQIVGEVWSVIMGT-GSKFTDYNNPQP 477
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 2e-04
Identities = 61/399 (15%), Positives = 101/399 (25%), Gaps = 155/399 (38%)
Query: 37 RPHSVSITEFGAVGDGKTLNTLA------------FQNAIFYLKSFADKGGAQLYVPSGK 84
RP ++ G +G GKT +A IF
Sbjct: 148 RPAK-NVLIDGVLGSGKT--WVALDVCLSYKVQCKMDFKIF------------------- 185
Query: 85 WLT-GSFNLTSHLTLFLEKGAVILGSQ-NPSHWDVVDPLPSYGRGIE---------LPGR 133
WL + N + L+K L Q +P+ D + I L +
Sbjct: 186 WLNLKNCNSPETVLEMLQK----LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 134 RYK-SLINGYMLRDV----------------VVTGDNGTIDGQGSVWWDWFSSQSLNYSR 176
Y+ L+ +L +V + T D + +
Sbjct: 242 PYENCLL---VLLNVQNAKAWNAFNLSCKILLTTRFKQVTD----------FLSAATTTH 288
Query: 177 PHLVE----FISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPE----SPYTV 228
L E + L + Q++ P E +P +
Sbjct: 289 ISLDHHSMTLTPDEVKSL----LLK----------YLDCRPQDL----PREVLTTNPRRL 330
Query: 229 GIVPDS-SDNVC----------------IEDCIIAMGHDAISLKSGWDEYGIAYGRPTTD 271
I+ +S D + IE + + + + +D + P
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL--EPAEYRKMFDRLSVF---P-PS 384
Query: 272 VHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYD-----------SLNGIEFRTTK 320
HI +LL ++ V V K+H Y S+ I
Sbjct: 385 AHIPTILLSL-------IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 321 GRGGYI---RQIVISDAELYNINVAFGACGNCGSHPDDD 356
R IV + YNI F + P D
Sbjct: 438 KLENEYALHRSIV----DHYNIPKTF--DSDDLIPPYLD 470
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 456 | |||
| 3jur_A | 448 | EXO-poly-alpha-D-galacturonosidase; beta-helix, ce | 100.0 | |
| 1bhe_A | 376 | PEHA, polygalacturonase; family 28 glycosyl hydrol | 100.0 | |
| 2uvf_A | 608 | Exopolygalacturonase; GH28, pectin, cell WALL, hyd | 100.0 | |
| 1rmg_A | 422 | Rgase A, rhamnogalacturonase A; hydrolase, inverti | 100.0 | |
| 1czf_A | 362 | Polygalacturonase II; beta helix, hydrolase; HET: | 100.0 | |
| 2iq7_A | 339 | Endopolygalacturonase; parallel beta helix, hydrol | 100.0 | |
| 1hg8_A | 349 | Endopolygalacturonase; hydrolase, pectin degradati | 100.0 | |
| 1nhc_A | 336 | Polygalacturonase I; beta-helix, hydrolase; HET: M | 100.0 | |
| 1ia5_A | 339 | Polygalacturonase; glycosylhydrolase, hydrolase; H | 100.0 | |
| 1k5c_A | 335 | Endopolygalacturonase; beta helical structure, gly | 100.0 | |
| 2x6w_A | 600 | Tail spike protein; viral protein, beta-helix, hyd | 100.0 | |
| 1x0c_A | 549 | Isopullulanase; glycoside hydrolase family 49, gly | 100.0 | |
| 1ogo_X | 574 | Dextranase; hydrolase, dextran degradation, glycos | 100.0 | |
| 3gqn_A | 772 | Preneck appendage protein; beta helix, beta barrel | 100.0 | |
| 3gq8_A | 609 | Preneck appendage protein; beta helix, viral prote | 100.0 | |
| 1h80_A | 464 | IOTA-carrageenase; hydrolase, IOTA-carrageenan dou | 100.0 | |
| 2vbk_A | 514 | Tailspike-protein; viral adhesion protein, viral p | 100.0 | |
| 2pyg_A | 377 | Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli | 100.0 | |
| 3eqn_A | 758 | Glucan 1,3-beta-glucosidase; tandem beta-helix dom | 99.92 | |
| 3jur_A | 448 | EXO-poly-alpha-D-galacturonosidase; beta-helix, ce | 99.9 | |
| 1ia5_A | 339 | Polygalacturonase; glycosylhydrolase, hydrolase; H | 99.88 | |
| 1czf_A | 362 | Polygalacturonase II; beta helix, hydrolase; HET: | 99.88 | |
| 2iq7_A | 339 | Endopolygalacturonase; parallel beta helix, hydrol | 99.87 | |
| 1nhc_A | 336 | Polygalacturonase I; beta-helix, hydrolase; HET: M | 99.86 | |
| 2uvf_A | 608 | Exopolygalacturonase; GH28, pectin, cell WALL, hyd | 99.86 | |
| 1rmg_A | 422 | Rgase A, rhamnogalacturonase A; hydrolase, inverti | 99.84 | |
| 1hg8_A | 349 | Endopolygalacturonase; hydrolase, pectin degradati | 99.84 | |
| 1bhe_A | 376 | PEHA, polygalacturonase; family 28 glycosyl hydrol | 99.84 | |
| 1k5c_A | 335 | Endopolygalacturonase; beta helical structure, gly | 99.83 | |
| 1x0c_A | 549 | Isopullulanase; glycoside hydrolase family 49, gly | 99.73 | |
| 1ogo_X | 574 | Dextranase; hydrolase, dextran degradation, glycos | 99.73 | |
| 2inu_A | 410 | Insulin fructotransferase; right-handed parallel b | 99.59 | |
| 1h80_A | 464 | IOTA-carrageenase; hydrolase, IOTA-carrageenan dou | 99.56 | |
| 3gq8_A | 609 | Preneck appendage protein; beta helix, viral prote | 99.37 | |
| 3gqn_A | 772 | Preneck appendage protein; beta helix, beta barrel | 99.34 | |
| 2pyg_A | 377 | Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli | 99.32 | |
| 2x6w_A | 600 | Tail spike protein; viral protein, beta-helix, hyd | 99.25 | |
| 3eqn_A | 758 | Glucan 1,3-beta-glucosidase; tandem beta-helix dom | 99.24 | |
| 1ru4_A | 400 | Pectate lyase, PEL9A; parallel beta-helix; 1.60A { | 99.24 | |
| 1dbg_A | 506 | Chondroitinase B; beta helix, polysaccharide lyase | 99.23 | |
| 1pcl_A | 355 | Pectate lyase E; lyase (acting on polysaccharides) | 98.65 | |
| 1idk_A | 359 | Pectin lyase A; signal, glycoprotein, multigene fa | 98.55 | |
| 1gq8_A | 319 | Pectinesterase; hydrolase, carboxylic ester hydrol | 98.54 | |
| 3uw0_A | 364 | Pectinesterase; right-handed beta-helix, carbohydr | 98.52 | |
| 2x3h_A | 542 | K5 lyase, K5A lyase; bacteriophage, glycosaminogly | 98.48 | |
| 3zsc_A | 340 | Pectate trisaccharide-lyase; hydrolase; HET: ADA A | 98.48 | |
| 1xg2_A | 317 | Pectinesterase 1; protein-protein complex, beta he | 98.47 | |
| 1pxz_A | 346 | Major pollen allergen JUN A 1; parallel beta-helix | 98.45 | |
| 2qy1_A | 330 | Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca | 98.36 | |
| 1pxz_A | 346 | Major pollen allergen JUN A 1; parallel beta-helix | 98.31 | |
| 3zsc_A | 340 | Pectate trisaccharide-lyase; hydrolase; HET: ADA A | 98.27 | |
| 1qcx_A | 359 | Pectin lyase B; beta-helix protein, plant cell WAL | 98.2 | |
| 3vmv_A | 326 | Pectate lyase; polysaccharide lyase family 1, beta | 98.19 | |
| 2qy1_A | 330 | Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca | 98.15 | |
| 1air_A | 353 | Pectate lyase C, PELC; pectate cleavage, pectinoly | 98.14 | |
| 2inu_A | 410 | Insulin fructotransferase; right-handed parallel b | 98.09 | |
| 1ru4_A | 400 | Pectate lyase, PEL9A; parallel beta-helix; 1.60A { | 98.03 | |
| 2nsp_A | 342 | Pectinesterase A; michaelis complex, hydrolase; HE | 98.02 | |
| 1vbl_A | 416 | Pectate lyase 47; PL 47, thermostable, bacillus su | 98.0 | |
| 1qcx_A | 359 | Pectin lyase B; beta-helix protein, plant cell WAL | 98.0 | |
| 1air_A | 353 | Pectate lyase C, PELC; pectate cleavage, pectinoly | 97.95 | |
| 1idk_A | 359 | Pectin lyase A; signal, glycoprotein, multigene fa | 97.92 | |
| 2o04_A | 399 | Pectate lyase, PL; hexasaccharide compound II, cal | 97.88 | |
| 1pe9_A | 361 | Pectate lyase A; parallel beta helix; 1.60A {Erwin | 97.84 | |
| 2o04_A | 399 | Pectate lyase, PL; hexasaccharide compound II, cal | 97.7 | |
| 3vmv_A | 326 | Pectate lyase; polysaccharide lyase family 1, beta | 97.57 | |
| 1pe9_A | 361 | Pectate lyase A; parallel beta helix; 1.60A {Erwin | 97.52 | |
| 1pcl_A | 355 | Pectate lyase E; lyase (acting on polysaccharides) | 97.46 | |
| 1vbl_A | 416 | Pectate lyase 47; PL 47, thermostable, bacillus su | 97.4 | |
| 3grh_A | 422 | YBHC, acyl-COA thioester hydrolase YBGC; beta-heli | 97.21 | |
| 2vbk_A | 514 | Tailspike-protein; viral adhesion protein, viral p | 97.01 | |
| 1dbg_A | 506 | Chondroitinase B; beta helix, polysaccharide lyase | 95.72 | |
| 3t9g_A | 196 | Pectate lyase; PL3, parallel beta-helix; HET: GOL; | 95.72 | |
| 3t9g_A | 196 | Pectate lyase; PL3, parallel beta-helix; HET: GOL; | 94.5 | |
| 1gq8_A | 319 | Pectinesterase; hydrolase, carboxylic ester hydrol | 94.45 | |
| 1xg2_A | 317 | Pectinesterase 1; protein-protein complex, beta he | 94.43 | |
| 1ee6_A | 197 | Pectate lyase; parallel beta-helix, high-alkaline, | 92.92 | |
| 1ee6_A | 197 | Pectate lyase; parallel beta-helix, high-alkaline, | 92.34 | |
| 3b4n_A | 344 | Endo-pectate lyase; pectin, galacturonic acid, rig | 91.33 | |
| 2nsp_A | 342 | Pectinesterase A; michaelis complex, hydrolase; HE | 89.52 | |
| 3uw0_A | 364 | Pectinesterase; right-handed beta-helix, carbohydr | 86.73 | |
| 3ju4_A | 670 | Endo-N-acetylneuraminidase; endonf, polysia, high- | 83.07 |
| >3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-71 Score=565.93 Aligned_cols=362 Identities=30% Similarity=0.502 Sum_probs=318.6
Q ss_pred CCCCCceEEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCCceeeeeeEeccceEEEeccCcEEEecCCCC
Q 012788 34 LDPRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPS 113 (456)
Q Consensus 34 ~~~~~~~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~l~L~s~~tL~l~~ga~i~~~~~~~ 113 (456)
+..++.++||++|||+|||++|||+|||+||++| ++.+|++|+||+|+|++++|.|+|+++|+++ |+|+++.+++
T Consensus 21 p~~~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~~c---~~~ggg~v~vP~G~yl~~~l~l~s~v~l~l~--gtL~~s~d~~ 95 (448)
T 3jur_A 21 PQIPDREVNLLDFGARGDGRTDCSESFKRAIEEL---SKQGGGRLIVPEGVFLTGPIHLKSNIELHVK--GTIKFIPDPE 95 (448)
T ss_dssp CCCCSCEEEGGGGTCCCEEEEECHHHHHHHHHHH---HHHTCEEEEECSSEEEESCEECCTTEEEEES--SEEEECCCGG
T ss_pred CCCCCcEEEEEecccCCCCCeecHHHHHHHHHhh---hhcCCeEEEECCCcEEEeeeEeCCCcEEEEE--EEEEecCCHH
Confidence 3456689999999999999999999999999988 4568999999999999999999999999998 9999999999
Q ss_pred CC-CcCCCCCCCCcccccCCCcceeeEEEeeeeeEEEeccCceeeCCC--ccccccccc---------------------
Q 012788 114 HW-DVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQG--SVWWDWFSS--------------------- 169 (456)
Q Consensus 114 ~~-~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~GtidG~g--~~ww~~~~~--------------------- 169 (456)
+| +.. ...++|.+. .++.+||++.+++||+|+|. |+|||+| +.||+....
T Consensus 96 ~y~p~~---~~~~~G~~~--~~~~~lI~~~~~~ni~ItG~-GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~~ 169 (448)
T 3jur_A 96 RYLPVV---LTRFEGIEL--YNYSPLVYALDCENVAITGS-GVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKE 169 (448)
T ss_dssp GGCSCE---EEEETTEEE--EESCCSEEEESCEEEEEESS-CEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHHH
T ss_pred HhCccc---ccccccccc--cCccceEEEeCcEeeEEEEe-EEEECCCCchhhhhhcccccccccccccccccchhhhhh
Confidence 98 431 112233221 24568999999999999997 9999999 889975321
Q ss_pred -------------CCCCCCCCeeEEEEeeccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCcc
Q 012788 170 -------------QSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSD 236 (456)
Q Consensus 170 -------------~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~ 236 (456)
....+.||++|.|.+|+|++|+|++++|+|+|++++..|+|++|+|++|.++ ++|+||||+.+|+
T Consensus 170 ~~~~~~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~ 247 (448)
T 3jur_A 170 MAERGTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCK 247 (448)
T ss_dssp HHHHTCCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCE
T ss_pred hhcccCcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCc
Confidence 0123579999999999999999999999999999999999999999999986 6899999999999
Q ss_pred CEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCC-eeEecccccCcEEeEEEEeEEEECCcceEE
Q 012788 237 NVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGS-SVAFGSEMSGGISNVQVEKIHLYDSLNGIE 315 (456)
Q Consensus 237 nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~-gi~igs~~~~~v~nI~v~n~~~~~~~~gi~ 315 (456)
||+|+||+|.++||||++|++++.+|.....|++||+|+||+|++..+| ||+|||++.++++||+|+||+|.++.+|++
T Consensus 248 nV~I~n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~~~~v~nV~v~n~~~~~t~~Gir 327 (448)
T 3jur_A 248 YMLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNVVARNNVYMNVERALR 327 (448)
T ss_dssp EEEEESCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSCTTCEEEEEEESCEEESCSEEEE
T ss_pred CEEEEeeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcccCcEEEEEEEEEEEecccceEE
Confidence 9999999999999999999999999988889999999999999543255 999999999999999999999999999999
Q ss_pred EEecCCCCceEEeEEEEceEecCcceeE-EEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccceeEEEEeeCCCCeee
Q 012788 316 FRTTKGRGGYIRQIVISDAELYNINVAF-GACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQEAPFAN 394 (456)
Q Consensus 316 iks~~g~~g~v~nI~~~ni~~~~~~~~i-~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~~~g~~~~~~~~ 394 (456)
||++.+++|.|+||+|+||+|+++++++ .|++.|+.. .+...+.|+||+|+||+++....++.|.|+++.||+|
T Consensus 328 IKt~~g~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~-----~~~~~~~i~nI~~~NI~~t~~~~~i~i~g~~~~p~~~ 402 (448)
T 3jur_A 328 LKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNE-----EGEYLPVVRSVFVKNLKATGGKYAVRIEGLENDYVKD 402 (448)
T ss_dssp EECCTTTCSEEEEEEEESCEEEEESSEEEEEESCGGGC-----CCSCCCEEEEEEEESCEEEECSEEEEEECBTTBCEEE
T ss_pred EEEEcCCCceEeeEEEEEEEEECCccccEEEEeeccCC-----CCCCCceEEEEEEEeEEEEecceEEEEEeCCCCCEee
Confidence 9999988999999999999999999998 999999864 1223479999999999999877889999999999999
Q ss_pred EEEEeEEEEeCCCCCCcceeee
Q 012788 395 ICLSNISLSINPGSYNSWECSN 416 (456)
Q Consensus 395 I~~~nv~i~~~~~~~~~~~c~~ 416 (456)
|+|+||+++.... ...|.+
T Consensus 403 I~~~nv~i~~~~~---~~~~~~ 421 (448)
T 3jur_A 403 ILISDTIIEGAKI---SVLLEF 421 (448)
T ss_dssp EEEEEEEEESCSE---EEEEEE
T ss_pred EEEEEEEEEcccc---ceeEec
Confidence 9999999987543 344554
|
| >1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-64 Score=511.50 Aligned_cols=353 Identities=22% Similarity=0.396 Sum_probs=304.2
Q ss_pred CCCCceEEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecC---CceeeeeeEeccceEEEeccCcEEEecCC
Q 012788 35 DPRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPS---GKWLTGSFNLTSHLTLFLEKGAVILGSQN 111 (456)
Q Consensus 35 ~~~~~~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~---G~Yl~g~l~L~s~~tL~l~~ga~i~~~~~ 111 (456)
|.-+.+|+|++|| .+|||+|||+||++| .+ |++|+||+ |+|++++|.|+|+++|+|+.||+|+++.+
T Consensus 9 p~~p~~~~v~~~G-----~~~dT~aiq~Ai~ac----~~-Gg~v~~~~~~~g~yl~g~i~l~s~vtL~l~~Ga~L~~s~~ 78 (376)
T 1bhe_A 9 PKTPSSCTTLKAD-----SSTATSTIQKALNNC----DQ-GKAVRLSAGSTSVFLSGPLSLPSGVSLLIDKGVTLRAVNN 78 (376)
T ss_dssp CCCCCEEEEEECC-----SSBCHHHHHHHHTTC----CT-TCEEEEECSSSSEEEESCEECCTTCEEEECTTCEEEECSC
T ss_pred CCCCCeEEECCCC-----CCccHHHHHHHHHHh----cc-CCcEEEECCCCceEEEeEEEECCCCEEEECCCeEEEeCCC
Confidence 3344579999985 589999999999976 34 55666654 79999999999999999999999999999
Q ss_pred CCCCCcCCCCCCCCcccccCCCcceeeEEEeeeeeEEEeccCceeeCCC--------ccccccccc---CCCCCCCCeeE
Q 012788 112 PSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQG--------SVWWDWFSS---QSLNYSRPHLV 180 (456)
Q Consensus 112 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~GtidG~g--------~~ww~~~~~---~~~~~~rp~~i 180 (456)
+.+|+...+ .++ +.+.++..+.+||++.+++||+|+|. |+|||+| +.||+.... ......||++|
T Consensus 79 ~~~y~~~~~--~~g-~~~~~g~~~~~~I~~~~~~ni~I~G~-G~IdG~G~~~~~~~~~~ww~~~~~~~~~~~~~~rp~~i 154 (376)
T 1bhe_A 79 AKSFENAPS--SCG-VVDKNGKGCDAFITAVSTTNSGIYGP-GTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLI 154 (376)
T ss_dssp SGGGBSSTT--CSS-CEESCSCCBCCSEEEESCBSCEEECS-SEEECCTTSCCSSSSSCTTHHHHHHHHHTCEECCCCSE
T ss_pred HHHCcCCCc--ccc-ccccCCCCcccEEEEECCEeEEEEeC-EEEECCCCcccCCCccccccccccccccCccCCCCeEE
Confidence 999975432 121 22223344568999999999999997 9999999 579974311 11234689999
Q ss_pred EEEeeccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCc
Q 012788 181 EFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDE 260 (456)
Q Consensus 181 ~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~ 260 (456)
.|.+|+|++|+|++++|+|.|++++..|++++|+|++|.++.+++|+||||+.+|+||+|+||+|.++||||++|++.+
T Consensus 155 ~~~~~~nv~I~~iti~nsp~~~i~~~~~~~v~i~~v~I~~~~~~~NtDGid~~~s~nV~I~n~~i~~gDDcIaiks~~~- 233 (376)
T 1bhe_A 155 QINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKG- 233 (376)
T ss_dssp EEESCEEEEEEEEEEECCSSCSEEEESCEEEEEEEEEEECCTTCSSCCSEEEESCEEEEEESCEEECSSCSEEEEECTT-
T ss_pred EEEcceEEEEEeEEEECCCcEEEEEeCCCcEEEEeEEEECCCCCCCCceEeecCCceEEEEeCEEecCCCeEEEcccCC-
Confidence 9999999999999999999999999999999999999999988999999999999999999999999999999997421
Q ss_pred cccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCcc
Q 012788 261 YGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNIN 340 (456)
Q Consensus 261 ~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~ 340 (456)
..+++||+|+||+|.. +|||+||||+. +++||+|+||+|.++.+|++||+|++++|.|+||+|+||+|++++
T Consensus 234 -----~~~s~nI~I~n~~~~~--ghGisiGSe~~-~v~nV~v~n~~~~~t~~GirIKt~~g~~G~v~ni~f~ni~~~~v~ 305 (376)
T 1bhe_A 234 -----RAETRNISILHNDFGT--GHGMSIGSETM-GVYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNVA 305 (376)
T ss_dssp -----SCCEEEEEEEEEEECS--SSCEEEEEEES-SEEEEEEEEEEEESCSEEEEEECCTTTCCEEEEEEEEEEEEESCS
T ss_pred -----CCCceEEEEEeeEEEc--cccEEeccCCc-cEeeEEEEeeEEeCCCcEEEEEEecCCCceEeeEEEEeEEEeCCC
Confidence 2469999999999985 79999999987 999999999999999999999999999999999999999999999
Q ss_pred eeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccceeEEEEeeCCCCeeeEEEEeEEEEeCCCCCCcceeeeeeec
Q 012788 341 VAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGS 420 (456)
Q Consensus 341 ~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~~~g~~~~~~~~I~~~nv~i~~~~~~~~~~~c~~v~g~ 420 (456)
+||.|++.|+++. ++..|.|+||+|+||++++.. ++.|.|+++.||++|+|+||++... ..|.|+|++..
T Consensus 306 ~~i~i~~~y~~~~-----~~~~~~i~ni~~~ni~gt~~~-~~~l~g~~~~~~~~I~l~nv~l~~~----~~~~~~~~~~~ 375 (376)
T 1bhe_A 306 KPIVIDTVYEKKE-----GSNVPDWSDITFKDVTSETKG-VVVLNGENAKKPIEVTMKNVKLTSD----STWQIKNVNVK 375 (376)
T ss_dssp EEEEEETTSSCCC-----CCCCCEEEEEEEEEEEECSCC-EEEEECTTCSSCEEEEEEEEECCTT----CEEEEESEEEE
T ss_pred ceEEEEeeccCCC-----CCcCcEEEEEEEEEEEEEecc-eEEEEeCCCCCeeeEEEEeEEEecC----CCceEEEEEec
Confidence 9999999998632 234478999999999999764 6789999999999999999999865 36999999753
|
| >2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-63 Score=525.43 Aligned_cols=371 Identities=25% Similarity=0.341 Sum_probs=307.2
Q ss_pred CCCCceEEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCCceeeeeeEeccceEEEeccCcEEEecCCCCC
Q 012788 35 DPRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSH 114 (456)
Q Consensus 35 ~~~~~~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~l~L~s~~tL~l~~ga~i~~~~~~~~ 114 (456)
++.+..+||++|||+|||++|||+|||+||++| +.|++|+||+|+|++++|.|+|+++|+|++||+|+++.+.++
T Consensus 151 ~~~~~~~~v~~~Ga~~dg~~ddt~aiq~Ai~~c-----~~g~~v~vP~G~y~~g~i~lks~v~L~l~~gatL~~s~d~~~ 225 (608)
T 2uvf_A 151 SAKPQIVNVRDFGAIDDGKTLNTKAIQQAIDSC-----KPGCRVEIPAGTYKSGALWLKSDMTLNLQAGAILLGSENPDD 225 (608)
T ss_dssp CCCCCEEEGGGGTCCSSSSCCCHHHHHHHHHTC-----CTTEEEEECSEEEEECCEECCSSEEEEECTTEEEEECSCGGG
T ss_pred ccCCCEEecccccccCCCCccCHHHHHHHHHhc-----CCCCEEEECCCceEecceeccCceEEEecCCcEEEecCCHHH
Confidence 456779999999999999999999999999976 238999999999999999999999999999999999999988
Q ss_pred CCcCCCCCCCCcccccCCCcceeeEEEee--------eeeEEEeccCceeeCCCcccccccc--c--C------------
Q 012788 115 WDVVDPLPSYGRGIELPGRRYKSLINGYM--------LRDVVVTGDNGTIDGQGSVWWDWFS--S--Q------------ 170 (456)
Q Consensus 115 ~~~~~~~~~~~~g~~~~~~~~~~~i~~~~--------~~ni~I~G~~GtidG~g~~ww~~~~--~--~------------ 170 (456)
|+....+..|.. ..++.++|++.+ ++||+|+|. |+|||+|..||+... . +
T Consensus 226 y~~~~~~~~~~~-----~~~~~~lI~~~~~~~~~~g~~~ni~I~G~-GtIDG~G~~~~~~~~~~~~~g~~~p~~~~~~~~ 299 (608)
T 2uvf_A 226 YPAGYRLYPYST-----IERPASLINAIDPNNSKPGTFRNIRITGS-GVIDGNGWLRAKTAEITDELGRSLPQYVASKNS 299 (608)
T ss_dssp SCEEECSSTTCC-----SCEECCSEEECCSSCCCTTSEEEEEEESS-CEEECCCBCEEEEEEEECTTSCEEEEECCCCTT
T ss_pred CcCcceeeeccc-----cccccceEEeeccccccccceeeEEEEee-EEEcCcccccccccccccccccccccccccccc
Confidence 874211111111 124457899887 799999997 999999988874310 0 0
Q ss_pred -------------------CC------CCCCCeeEEEEeeccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCC
Q 012788 171 -------------------SL------NYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESP 225 (456)
Q Consensus 171 -------------------~~------~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~ 225 (456)
.. ...||++|.|.+|+|++|+|++|+|++.|++++..|+|++|+|+++.. .+++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~rP~~i~~~~~~nv~I~giti~ns~~~~i~~~~~~nv~i~~v~i~~-~~~~ 378 (608)
T 2uvf_A 300 KVHEDGILAKNQVEKAVSDGMDLKNAYGQRRSSLMTLRGVENVYLAGFTVRNPAFHGIMNLENHNVVANGLIHQT-YDAN 378 (608)
T ss_dssp THHHHBSHHHHHHHHHHHTTCCHHHHHHHSSCCSEEEESEEEEEEESCEEECCSSCSEEEESCEEEEEESCEEEC-TTCT
T ss_pred cccccccccccccccccccccccccccccCCCeEEEEEeeeeEEEeCcEEecCCCCEEEEecCCCEEEeeEEEcC-CCCC
Confidence 00 014899999999999999999999999999999999999999999864 4578
Q ss_pred CCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCee-EecccccCcEEeEEEEe
Q 012788 226 YTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSV-AFGSEMSGGISNVQVEK 304 (456)
Q Consensus 226 n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi-~igs~~~~~v~nI~v~n 304 (456)
|+||||+.+|+||+|+||+|.++||||++++|++.+|.. .++++||+|+||+|.. +||+ .|||++.++++||+|+|
T Consensus 379 NtDGidi~~s~nV~I~n~~i~~gDD~Iaiksg~~~~g~~-~~~s~nI~I~n~~~~~--ghg~~~iGS~~~~~v~nI~v~n 455 (608)
T 2uvf_A 379 NGDGIEFGNSQNVMVFNNFFDTGDDCINFAAGTGEKAQE-QEPMKGAWLFNNYFRM--GHGAIVTGSHTGAWIEDILAEN 455 (608)
T ss_dssp TCCSEEEESCEEEEEESCEEECSSCSEEEECCCSGGGGG-SCCEEEEEEESCEECS--SSCSEEEESCCTTCEEEEEEES
T ss_pred CCCeEEecCCceEEEEeeEEecCCceEEecCCcCccccc-cccccCEEEEeEEEeC--CCCeEEEcccCCCCEEEEEEEe
Confidence 999999999999999999999999999999999999987 8899999999999997 4555 59999999999999999
Q ss_pred EEEECCcceEEEEecCCCCceEEeEEEEceEecCc-ceeEEEeccCCCCCCC-CCCCC-CCCeEEEEEEEEEEeeccc--
Q 012788 305 IHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNI-NVAFGACGNCGSHPDD-DFDPD-ALPAIDQITFKDIIGTNIT-- 379 (456)
Q Consensus 305 ~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~-~~~i~i~~~y~~~~~~-~~~~~-~~~~i~nIt~~nI~~~~~~-- 379 (456)
|+|.++.+|++||++.+++|.|+||+|+|++|+++ ++||.|++.|++.... .+.+. ..+.+++|+|+||+.++..
T Consensus 456 ~~~~~t~~GirIKt~~g~gG~v~nI~~~ni~m~~v~~~~i~I~~~y~~~~~~~~~~~~~~~~~~~~V~i~nI~~~n~~gt 535 (608)
T 2uvf_A 456 NVMYLTDIGLRAKSTSTIGGGARNVTFRNNAMRDLAKQVMVMTLDYADSNANIDYPPAKIPAQFYDFTLKNVTVDNSTGK 535 (608)
T ss_dssp CEEESCSEEEEEEEETTTCCEEEEEEEEEEEEEEESSEEEEEEEECCCCSCCCSSCCCSSCCEEEEEEEEEEEEEEECSS
T ss_pred EEEECCCceEEEeeecCCCceEECcEEEeeEEEccccccEEEEeccCCCCcccccCCcCCCCccccEEEEeEEEEeeece
Confidence 99999999999999999999999999999999999 5999999999864331 22232 2356788888888777643
Q ss_pred -eeEEEEe--eCCCCeeeEEEEeEEEEeCCCCC----Ccceeeeeeec
Q 012788 380 -IAGNFTG--IQEAPFANICLSNISLSINPGSY----NSWECSNIHGS 420 (456)
Q Consensus 380 -~~~~~~g--~~~~~~~~I~~~nv~i~~~~~~~----~~~~c~~v~g~ 420 (456)
.++.+.+ .+..||+||+|+||+++...+.. ..|.|+|+.-.
T Consensus 536 ~~~i~i~g~~~~~~p~~ni~~~nv~i~~~~~~~i~~~~~~~~~nv~i~ 583 (608)
T 2uvf_A 536 NPSIEIKGDTANKAWHRLVHVNNVQLNNVTPTAISDLRDSEFNKVTFT 583 (608)
T ss_dssp SCSEEEECBGGGTBCEEEEEEEEEEEESCCCCEEESEESCEEEEEEEE
T ss_pred EEeEEEEEEcCCCCccccEEEEeEEEEccCceeEEeccCceEEeEEEe
Confidence 2455555 45579999999999998765321 24555665544
|
| >1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-61 Score=495.78 Aligned_cols=332 Identities=18% Similarity=0.281 Sum_probs=289.2
Q ss_pred CceEEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCCceeeee-eEec--cceEEEeccCcEEEecCCCCC
Q 012788 38 PHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGS-FNLT--SHLTLFLEKGAVILGSQNPSH 114 (456)
Q Consensus 38 ~~~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~-l~L~--s~~tL~l~~ga~i~~~~~~~~ 114 (456)
...++|++|||++||++|||+|||+||++| +++++|+||+|+|++++ |.|+ ++++|+++ | +++...+..
T Consensus 18 ~~~~~V~~~GA~~dg~tddT~Aiq~Ai~ac-----~~g~~V~vP~G~Yli~~~l~l~g~s~v~l~l~-G-~~l~~~~~~- 89 (422)
T 1rmg_A 18 TKTCNILSYGAVADNSTDVGPAITSAWAAC-----KSGGLVYIPSGNYALNTWVTLTGGSATAIQLD-G-IIYRTGTAS- 89 (422)
T ss_dssp HCEEEGGGGTCCCSSSSBCHHHHHHHHHHH-----TBTCEEEECSSEEEECSCEEEESCEEEEEEEC-S-EEEECCCCS-
T ss_pred CcEEEeeeccccCCCCcccHHHHHHHHHHC-----CCCCEEEECCCeEEeCCceeecCCCeEEEEEc-C-cEEcccCCC-
Confidence 458999999999999999999999999977 35889999999999995 9999 68888876 4 444433210
Q ss_pred CCcCCCCCCCCcccccCCCcceeeEEEeeeeeEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEE
Q 012788 115 WDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLT 194 (456)
Q Consensus 115 ~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~ 194 (456)
..|..++...+++++.|+|. |+|||+|..||.. ...||++|+|.+|+|++|+|++
T Consensus 90 ------------------~~~~~~~~~~~~~~i~i~G~-G~IdG~G~~~w~~------~~~rp~~i~~~~~~nv~I~~it 144 (422)
T 1rmg_A 90 ------------------GNMIAVTDTTDFELFSSTSK-GAVQGFGYVYHAE------GTYGARILRLTDVTHFSVHDII 144 (422)
T ss_dssp ------------------SEEEEEEEEEEEEEECSSSC-CEEECCTHHHHTT------TCCCCEEEEEEEEEEEEEEEEE
T ss_pred ------------------CceEEEEecCceeEEeeccC-EEEECCcchhhcC------CCCCceEEEEcccceEEEECeE
Confidence 12345677788888899996 9999999999963 1238999999999999999999
Q ss_pred EEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEE
Q 012788 195 FLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHI 274 (456)
Q Consensus 195 i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I 274 (456)
++|++.|++++..|+|++|+|++|.+ .+.+|+|||++.+ +||+|+||+|.++||||+++++ ++||+|
T Consensus 145 i~nsp~~~i~i~~~~nv~I~n~~I~~-~d~~ntDGidi~~-~nV~I~n~~i~~gDD~Iai~s~-----------~~nI~I 211 (422)
T 1rmg_A 145 LVDAPAFHFTMDTCSDGEVYNMAIRG-GNEGGLDGIDVWG-SNIWVHDVEVTNKDECVTVKSP-----------ANNILV 211 (422)
T ss_dssp EECCSSCSEEEEEEEEEEEEEEEEEC-CSSTTCCSEEEEE-EEEEEEEEEEESSSEEEEEEEE-----------EEEEEE
T ss_pred EECCCceEEEEeCcCCEEEEeEEEEC-CCCCCCccEeecC-CeEEEEeeEEeCCCCeEEeCCC-----------CcCEEE
Confidence 99999999999999999999999999 4567999999998 9999999999999999999984 999999
Q ss_pred EEEEEecCCCCeeEecccc-cCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCcceeEEEeccCCCCC
Q 012788 275 RRVLLQSSSGSSVAFGSEM-SGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVAFGACGNCGSHP 353 (456)
Q Consensus 275 ~n~~~~~~~~~gi~igs~~-~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~ 353 (456)
+||+|.. ++||+|||++ .+.++||+|+||+|.++.+|++||++.+ .|.|+||+|+||+|++++++|.|++.|+...
T Consensus 212 ~n~~~~~--~~GisIGS~g~~~~v~nV~v~n~~~~~~~~Gi~Ikt~~g-~G~v~nI~~~NI~~~~v~~~i~i~~~y~~~~ 288 (422)
T 1rmg_A 212 ESIYCNW--SGGCAMGSLGADTDVTDIVYRNVYTWSSNQMYMIKSNGG-SGTVSNVLLENFIGHGNAYSLDIDGYWSSMT 288 (422)
T ss_dssp EEEEEES--SSEEEEEEECTTEEEEEEEEEEEEEESSSCSEEEEEBBC-CEEEEEEEEEEEEEEEESCSEEEETBCTTSC
T ss_pred EeEEEcC--CcceeecccCCCCcEEEEEEEeEEEeccceEEEEEecCC-CcEEEEEEEEeEEEECccccEEEEeeccCCC
Confidence 9999985 6899999986 4679999999999999999999999764 5899999999999999999999999997632
Q ss_pred CCCCCCCCCCeEEEEEEEEEEeecc----ceeEEEEeeCCCCeeeEEEEeEEEEeCCCCCCcceeeeeeecc
Q 012788 354 DDDFDPDALPAIDQITFKDIIGTNI----TIAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGSS 421 (456)
Q Consensus 354 ~~~~~~~~~~~i~nIt~~nI~~~~~----~~~~~~~g~~~~~~~~I~~~nv~i~~~~~~~~~~~c~~v~g~~ 421 (456)
. .+...+.|+||+|+||+++.. ..++.|.|.++.+|+||+|+||+++...+.+..+.|+|+.|..
T Consensus 289 ~---~~~~~~~i~nI~~~nI~gt~~~g~~~~~i~i~~~~~~~~~ni~l~nv~i~~~~g~~~~~~C~n~~g~g 357 (422)
T 1rmg_A 289 A---VAGDGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELYLCRSAYGSG 357 (422)
T ss_dssp C---BSSSCCEEEEEEEEEEEEEESCTTTSCSEEEECBTTBCEEEEEEEEEEEEESSSSCEEEEEESEEEES
T ss_pred c---ccCCCceEEEEEEEeEEEEecccccceeEEEEeCCCCcEeeEEEEeEEEEcCCCCccceEEECCCccc
Confidence 1 123346999999999999974 2478899999999999999999999887766679999999763
|
| >1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-58 Score=464.56 Aligned_cols=318 Identities=16% Similarity=0.224 Sum_probs=272.3
Q ss_pred ceEEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCCceeeeee-EeccceEEEeccCcEEEecCCCCCCCc
Q 012788 39 HSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSF-NLTSHLTLFLEKGAVILGSQNPSHWDV 117 (456)
Q Consensus 39 ~~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~l-~L~s~~tL~l~~ga~i~~~~~~~~~~~ 117 (456)
.+++|++ ++|||+||++| +..++++|+||+|+|+ .| .|+++++|+++ +++.+. +..|.
T Consensus 28 ~~Ctv~~-----------~~aiq~ai~~c---~~~~g~~v~vP~G~~l--~l~~l~~~~~l~~~--g~~~~~--~~~w~- 86 (362)
T 1czf_A 28 DSCTFTT-----------AAAAKAGKAKC---STITLNNIEVPAGTTL--DLTGLTSGTKVIFE--GTTTFQ--YEEWA- 86 (362)
T ss_dssp CEEEESS-----------HHHHHHHGGGC---SEEEEESCEECTTCCE--EECSCCTTCEEEEE--SEEEEC--CCCSC-
T ss_pred CEEEECC-----------HHHHHHHHHHh---hccCCCEEEECCCEEE--EeeccCCCeEEEEe--CcEEec--cccCC-
Confidence 5688877 68999999998 4567889999999997 35 67889999987 344442 23342
Q ss_pred CCCCCCCCcccccCCCcceeeEEEeeeeeEEEecc-CceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEE
Q 012788 118 VDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGD-NGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFL 196 (456)
Q Consensus 118 ~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~-~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ 196 (456)
.+||.+. .+||+|+|. +|+|||+|+.||+..... ...||++++|.+|+|++|+|++++
T Consensus 87 ------------------g~~i~~~-~~nv~I~G~~~g~IdG~G~~~w~~~~~~--~~~rP~~i~~~~~~nv~i~~iti~ 145 (362)
T 1czf_A 87 ------------------GPLISMS-GEHITVTGASGHLINCDGARWWDGKGTS--GKKKPKFFYAHGLDSSSITGLNIK 145 (362)
T ss_dssp ------------------CCSEEEE-EESCEEEECTTCEEECCGGGTCCSCTTS--SSCCCCCEEEEEEETEEEESCEEE
T ss_pred ------------------CcEEEEe-CccEEEEcCCCcEEECCCchhhcccCCC--CCCCCeEEEEeecccEEEEEEEEe
Confidence 1467664 599999993 399999999999865332 567999999999999999999999
Q ss_pred eCCcceEEeecccceEEEEEEEECCCC----CCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccE
Q 012788 197 NAPAYNIHPVYCSNVHIQNISVHAPPE----SPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDV 272 (456)
Q Consensus 197 ns~~~~i~~~~~~nv~i~n~~i~~~~~----~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni 272 (456)
|+|.|++++. |+||+|+|++|.++.+ ++|+||||+.+|+||+|+||+|.++||||++|+ .+||
T Consensus 146 nsp~~~i~i~-~~nv~i~~~~I~~~~~d~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIaiks------------g~nI 212 (362)
T 1czf_A 146 NTPLMAFSVQ-ANDITFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHNQDDCLAVNS------------GENI 212 (362)
T ss_dssp CCSSCCEEEE-CSSEEEESCEEECGGGGTTTCCSCCSEEECSCEEEEEESCEEECSSCSEEESS------------EEEE
T ss_pred cCCccEEEEe-eCCEEEEEEEEECCccccccCCCCCceeecCcceEEEEeeEEecCCCEEEEeC------------CeEE
Confidence 9999999999 9999999999999643 789999999999999999999999999999998 4999
Q ss_pred EEEEEEEecCCCCeeEeccc---ccCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCcc-eeEEEecc
Q 012788 273 HIRRVLLQSSSGSSVAFGSE---MSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNIN-VAFGACGN 348 (456)
Q Consensus 273 ~I~n~~~~~~~~~gi~igs~---~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~-~~i~i~~~ 348 (456)
+|+||+|.. +|||+|||+ ..+.++||+|+||+|.++.+|+|||+|++++|.|+||+|+||+|++++ +||.|++.
T Consensus 213 ~i~n~~~~~--ghGisiGS~G~~~~~~v~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nI~~~ni~~~~v~~~~i~I~~~ 290 (362)
T 1czf_A 213 WFTGGTCIG--GHGLSIGSVGDRSNNVVKNVTIEHSTVSNSENAVRIKTISGATGSVSEITYSNIVMSGISDYGVVIQQD 290 (362)
T ss_dssp EEESCEEES--SCCEEEEEECSSSCCEEEEEEEEEEEEEEEEEEEEEEEETTCCEEEEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred EEEEEEEeC--CceeEEeeccccCCCCEEEEEEEeeEEECCceEEEEEEeCCCCceEeeEEEEeEEEECcccccEEEEEe
Confidence 999999996 789999997 347899999999999999999999999998999999999999999987 79999999
Q ss_pred CCCCCCCCCCCCCCCeEEEEEEEEEEeeccc--eeEEEEeeCCCCeeeEEEEeEEEEeCCCCCCcceeeeee
Q 012788 349 CGSHPDDDFDPDALPAIDQITFKDIIGTNIT--IAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIH 418 (456)
Q Consensus 349 y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~--~~~~~~g~~~~~~~~I~~~nv~i~~~~~~~~~~~c~~v~ 418 (456)
|++. .....|+..+.|+||+|+||+++... .++.+.|. +.||+||+|+||+++... ..+.|+|+.
T Consensus 291 Y~~~-~~~~~p~~~~~i~nI~~~ni~gt~~~~~~~i~i~c~-~~~c~ni~~~nv~i~~~~---~~~~C~n~~ 357 (362)
T 1czf_A 291 YEDG-KPTGKPTNGVTIQDVKLESVTGSVDSGATEIYLLCG-SGSCSDWTWDDVKVTGGK---KSTACKNFP 357 (362)
T ss_dssp EETT-EECSCCCSSEEEEEEEEEEEEEEECTTSEEEEEECC-TTTEEEEEEEEEEEESSB---CCSCCBSCC
T ss_pred cCCC-CCCCCCCCCceEEEEEEEEEEEEecCCceEEEEEeC-CCcCcCEEEEeEEEEcCC---CcccCcCCC
Confidence 9863 22233444468999999999999875 68899998 799999999999998632 356788876
|
| >2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-56 Score=445.21 Aligned_cols=315 Identities=20% Similarity=0.239 Sum_probs=268.9
Q ss_pred chHHHHHHHHHHhhccccCCCcEEEecCCceeeeee-EeccceEEEeccCcEEEecCCCCCCCcCCCCCCCCcccccCCC
Q 012788 55 LNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSF-NLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGR 133 (456)
Q Consensus 55 ddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~l-~L~s~~tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~~~ 133 (456)
.||+|||+||++| ++.++++|+||+|+|+. | .|+++++|.++ +++.+. +..|.
T Consensus 6 ~dt~aiq~ai~~c---~~~~g~~v~vP~G~~~~--l~~l~~~~~l~~~--g~~~~~--~~~w~----------------- 59 (339)
T 2iq7_A 6 TDAAAAIKGKASC---TSIILNGIVVPAGTTLD--MTGLKSGTTVTFQ--GKTTFG--YKEWE----------------- 59 (339)
T ss_dssp SCHHHHHHHGGGC---SEEEEESCEECTTCCEE--ECSCCTTCEEEEE--SEEEEC--CCCSC-----------------
T ss_pred CCHHHHHHHHHHh---hccCCCeEEECCCEEEE--eeccCCCeEEEEe--CcEEcc--ccccc-----------------
Confidence 4799999999998 45678899999999983 5 67889999887 344442 23342
Q ss_pred cceeeEEEeeeeeEEEecc-CceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEEeCCcceEEeecccceE
Q 012788 134 RYKSLINGYMLRDVVVTGD-NGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVH 212 (456)
Q Consensus 134 ~~~~~i~~~~~~ni~I~G~-~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~ 212 (456)
.+|+.+.+ +||+|+|. +|+|||+|+.||+..... ....||++|.|.+|+|++|++++++|+|.|++++..|++++
T Consensus 60 --g~~i~~~~-~nv~I~G~~gG~IdG~G~~~w~~~~~~-~~~~rp~~i~~~~~~nv~i~giti~nsp~~~i~i~~~~nv~ 135 (339)
T 2iq7_A 60 --GPLISFSG-TNININGASGHSIDCQGSRWWDSKGSN-GGKTKPKFFYAHSLKSSNIKGLNVLNTPVQAFSINSATTLG 135 (339)
T ss_dssp --CCSEEEEE-ESCEEEECTTCEEECCGGGTCCSCGGG-SSSCCCCCEEEEEEEEEEEECCEEECCSSCCEEEESCEEEE
T ss_pred --CcEEEEEc-ccEEEEcCCCCEEECCccccccccccc-CCCCCCeEEEEeeeCcEEEEEEEEEeCCcceEEEeccCCEE
Confidence 14666655 99999996 379999999999864332 24678999999999999999999999999999999999999
Q ss_pred EEEEEEECCCC----CCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeE
Q 012788 213 IQNISVHAPPE----SPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVA 288 (456)
Q Consensus 213 i~n~~i~~~~~----~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~ 288 (456)
|++++|.++.+ ++|+||||+.+|+||+|+||+|.++||||++++ .+||+|+||+|.. +|||+
T Consensus 136 i~~~~I~~~~~d~~~~~ntDGid~~~s~nV~I~n~~i~~gDDciaiks------------g~nI~i~n~~~~~--ghGis 201 (339)
T 2iq7_A 136 VYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINS------------GTNITFTGGTCSG--GHGLS 201 (339)
T ss_dssp EESCEEECGGGGGTTCCSCCSEEEESCEEEEEESCEEECSSCSEEESS------------EEEEEEESCEEES--SCCEE
T ss_pred EEEEEEECCccccccCCCCCcEEEcCcceEEEEecEEecCCCEEEEcC------------CccEEEEeEEEEC--CceEE
Confidence 99999999743 789999999999999999999999999999998 5999999999996 68999
Q ss_pred eccc---ccCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCcce-eEEEeccCCCCCCCCCCCCCCCe
Q 012788 289 FGSE---MSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINV-AFGACGNCGSHPDDDFDPDALPA 364 (456)
Q Consensus 289 igs~---~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~-~i~i~~~y~~~~~~~~~~~~~~~ 364 (456)
|||+ ..+.++||+|+||+|.++.+|++||+|++++|.|+||+|+||+|++++. ||.|++.|++. .....|...+.
T Consensus 202 iGSlg~~~~~~v~nV~v~n~~~~~~~~girIkt~~g~~G~v~nI~~~ni~~~~v~~~~i~i~~~y~~~-~~~~~p~~~~~ 280 (339)
T 2iq7_A 202 IGSVGGRSDNTVKTVTISNSKIVNSDNGVRIKTVSGATGSVSGVTYSGITLSNIAKYGIVIEQDYENG-SPTGTPTNGVP 280 (339)
T ss_dssp EEEESSSSCCEEEEEEEEEEEEESCSEEEEEEEETTCCCEEEEEEEEEEEEEEESSEEEEEEEEEETT-EECSCCCSSSC
T ss_pred ECcCCcccCCCEEEEEEEeeEEECCCcEEEEEEeCCCCeEEEEEEEEeEEccCcccccEEEEeecCCC-CCCCCCCCCce
Confidence 9995 3478999999999999999999999999888999999999999999876 99999999763 22233444468
Q ss_pred EEEEEEEEEEeeccc--eeEEEEeeCCCCeeeEEEEeEEEEeCCCCCCcceeeeee
Q 012788 365 IDQITFKDIIGTNIT--IAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIH 418 (456)
Q Consensus 365 i~nIt~~nI~~~~~~--~~~~~~g~~~~~~~~I~~~nv~i~~~~~~~~~~~c~~v~ 418 (456)
|+||+|+||+++... .++.|.|. +.||+||+|+||+++... ..+.|+|+.
T Consensus 281 i~ni~~~ni~gt~~~~~~~~~i~c~-~~~c~ni~~~nv~i~~~~---~~~~C~n~~ 332 (339)
T 2iq7_A 281 ITGLTLSKITGSVASSGTNVYILCA-SGACSNWKWSGVSVTGGK---KSTKCSNIP 332 (339)
T ss_dssp EEEEEEEEEEEEECTTSEEEEEECC-TTCEEEEEEEEEEEESSB---CCSCCBCCC
T ss_pred EEEEEEEeEEEEeCCCCEEEEEEeC-CCcEecEEEEeEEEEcCC---CcccccCCC
Confidence 999999999999875 68899994 899999999999998532 356788876
|
| >1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-56 Score=443.01 Aligned_cols=317 Identities=18% Similarity=0.222 Sum_probs=268.9
Q ss_pred hHHHHHHHHHHhhccccCCCcEEEecCCceeeeee-EeccceEEEeccCcEEEecCCCCCCCcCCCCCCCCcccccCCCc
Q 012788 56 NTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSF-NLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRR 134 (456)
Q Consensus 56 dT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~l-~L~s~~tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 134 (456)
||+|||+||++| ++.++++|+||+|+|+. | .|+++++|.++ +++.+. +..|..
T Consensus 7 ~t~aiq~ai~~c---~~~gg~~v~vP~G~~l~--l~~l~~~~~l~~~--g~~~~~--~~~w~~----------------- 60 (349)
T 1hg8_A 7 EYSGLATAVSSC---KNIVLNGFQVPTGKQLD--LSSLQNDSTVTFK--GTTTFA--TTADND----------------- 60 (349)
T ss_dssp SGGGHHHHHHHC---SEEEECCCEECTTCCEE--ETTCCTTCEEEEC--SEEEEC--CCCCTT-----------------
T ss_pred CHHHHHHHHHhc---cccCCCEEEECCCEEEE--eeccCCCeEEEEc--Cceecc--cccccC-----------------
Confidence 789999999998 45678899999999984 5 67889999986 344442 234421
Q ss_pred ceeeEEEeeeeeEEEecc-CceeeCCCcccccccccCCCCCCCCeeEEE-E-eeccEEEEeEEEEeCCcceEEeecccce
Q 012788 135 YKSLINGYMLRDVVVTGD-NGTIDGQGSVWWDWFSSQSLNYSRPHLVEF-I-SSENVVVSNLTFLNAPAYNIHPVYCSNV 211 (456)
Q Consensus 135 ~~~~i~~~~~~ni~I~G~-~GtidG~g~~ww~~~~~~~~~~~rp~~i~~-~-~~~nv~I~~v~i~ns~~~~i~~~~~~nv 211 (456)
.+||.+.+ +||+|+|. +|+|||+|+.||+........+.||++|.| . .|+|++|++++++|+|.|++++..|+++
T Consensus 61 -g~~i~~~~-~ni~I~G~~~G~IdG~G~~ww~~~~~~~~~~~rP~~i~~~~~~~~nv~I~giti~nsp~~~i~i~~~~nv 138 (349)
T 1hg8_A 61 -FNPIVISG-SNITITGASGHVIDGNGQAYWDGKGSNSNSNQKPDHFIVVQKTTGNSKITNLNIQNWPVHCFDITGSSQL 138 (349)
T ss_dssp -CCSEEEEE-ESCEEEECTTCEEECCGGGTCCSCTTCTTSCCCCSEEEEEEEEESSEEEESCEEECCSSEEEEEESCEEE
T ss_pred -CceEEEEC-ccEEEEecCCCEEcCCcchhhhcccccCCCCCCCeEEEEeecCcCcEEEEEEEEEcCCCceEEEeccCCE
Confidence 14677654 99999993 399999999999865433223379999999 7 7889999999999999999999999999
Q ss_pred EEEEEEEECCC-C-----------CCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEE
Q 012788 212 HIQNISVHAPP-E-----------SPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLL 279 (456)
Q Consensus 212 ~i~n~~i~~~~-~-----------~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~ 279 (456)
+|++++|.++. + ++|+||||+.+|+||+|+||+|.++||||++++ .+||+|+||+|
T Consensus 139 ~i~~~~I~~~~~~~~~~~~~~~~~~~NtDGid~~~s~nV~I~n~~i~~gDDcIaiks------------g~nI~i~n~~~ 206 (349)
T 1hg8_A 139 TISGLILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYNQDDCVAVTS------------GTNIVVSNMYC 206 (349)
T ss_dssp EEEEEEEECGGGSSCCTTTTTSCSCCSCCSEEEESCEEEEEEEEEEECSSCSEEESS------------EEEEEEEEEEE
T ss_pred EEEEEEEECCCCccccccccccccCCCCCeEEEccccEEEEEeeEEecCCCeEEeeC------------CeEEEEEeEEE
Confidence 99999999863 2 589999999999999999999999999999999 59999999999
Q ss_pred ecCCCCeeEeccc---ccCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCcc-eeEEEeccCCCCCCC
Q 012788 280 QSSSGSSVAFGSE---MSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNIN-VAFGACGNCGSHPDD 355 (456)
Q Consensus 280 ~~~~~~gi~igs~---~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~-~~i~i~~~y~~~~~~ 355 (456)
.. +|||+|||+ ..+.++||+|+||+|.++.+|++||+|++++|.|+||+|+||+|++++ +||.|++.|++. ..
T Consensus 207 ~~--ghGisiGS~G~~~~~~v~nV~v~n~~~~~~~~GirIKt~~g~~G~v~nI~~~ni~~~~v~~~~i~i~~~Y~~~-~~ 283 (349)
T 1hg8_A 207 SG--GHGLSIGSVGGKSDNVVDGVQFLSSQVVNSQNGCRIKSNSGATGTINNVTYQNIALTNISTYGVDVQQDYLNG-GP 283 (349)
T ss_dssp ES--SCCEEEEEESSSSCCEEEEEEEEEEEEEEEEEEEEEEEETTCCEEEEEEEEEEEEEEEEEEEEEEEEEEECSS-SB
T ss_pred eC--CcceEEccccccccCCEEEEEEEEEEEECCCcEEEEEecCCCCccccceEEEEEEEEccccccEEEEeeccCC-CC
Confidence 85 789999998 457899999999999999999999999988899999999999999997 799999999873 22
Q ss_pred CCCCCCCCeEEEEEEEEEEeeccc--eeEEEEeeCCCCeeeEEEEeEEEEeCCCCCCcceeeeeee
Q 012788 356 DFDPDALPAIDQITFKDIIGTNIT--IAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHG 419 (456)
Q Consensus 356 ~~~~~~~~~i~nIt~~nI~~~~~~--~~~~~~g~~~~~~~~I~~~nv~i~~~~~~~~~~~c~~v~g 419 (456)
...|...+.|+||+|+||+++... .++.|.|. +.||+||+|+||++++.. ....|.|+..
T Consensus 284 ~~~p~~~~~i~~I~~~ni~gt~~~~~~~v~i~c~-~~~c~ni~~~nv~i~~~~---~~~~C~n~~~ 345 (349)
T 1hg8_A 284 TGKPTNGVKISNIKFIKVTGTVASSAQDWFILCG-DGSCSGFTFSGNAITGGG---KTSSCNYPTN 345 (349)
T ss_dssp CSCCCSSEEEEEEEEEEEEEEECTTSEEEEEECC-SSCEEEEEEESCEEECCS---SCCEECSSSS
T ss_pred CCcccCCceEEEEEEEeEEEEeCCCCEEEEEEeC-CCcCcCEEEEeEEEEcCC---CCeeeeCCCC
Confidence 233444468999999999999875 58889998 699999999999998642 3567988864
|
| >1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-56 Score=442.66 Aligned_cols=315 Identities=20% Similarity=0.263 Sum_probs=268.0
Q ss_pred chHHHHHHHHHHhhccccCCCcEEEecCCceeeeee-EeccceEEEeccCcEEEecCCCCCCCcCCCCCCCCcccccCCC
Q 012788 55 LNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSF-NLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGR 133 (456)
Q Consensus 55 ddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~l-~L~s~~tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~~~ 133 (456)
.||+|||+||++| ++.++++|+||+|+|+ .| .|+++++|.++ +++.+. +..|.
T Consensus 6 ~~t~aiq~ai~~c---~~~gg~~v~vP~G~~~--~l~~l~~~~~l~~~--g~~~~~--~~~w~----------------- 59 (336)
T 1nhc_A 6 TSASEASESISSC---SDVVLSSIEVPAGETL--DLSDAADGSTITFE--GTTSFG--YKEWK----------------- 59 (336)
T ss_dssp SSHHHHHHHGGGC---SEEEEESCEECTTCCE--ECTTCCTTCEEEEE--SEEEEC--CCCSC-----------------
T ss_pred CCHHHHHHHHHHh---hccCCCeEEECCCEEE--EeeccCCCeEEEEe--ceEEcc--ccccc-----------------
Confidence 5799999999998 4567889999999997 35 66888888886 444442 23342
Q ss_pred cceeeEEEeeeeeEEEecc-CceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEEeCCcceEEeecccceE
Q 012788 134 RYKSLINGYMLRDVVVTGD-NGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVH 212 (456)
Q Consensus 134 ~~~~~i~~~~~~ni~I~G~-~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~ 212 (456)
.+|+.+. .+||+|+|. +|+|||+|+.||+..... ....||++|.|.+|+|++|++++++|+|.|++++. |++++
T Consensus 60 --g~li~~~-~~nv~I~G~~gG~IdG~G~~~w~~~~~~-~~~~rp~~i~~~~~~nv~i~~i~i~nsp~~~i~i~-~~nv~ 134 (336)
T 1nhc_A 60 --GPLIRFG-GKDLTVTMADGAVIDGDGSRWWDSKGTN-GGKTKPKFMYIHDVEDSTFKGINIKNTPVQAISVQ-ATNVH 134 (336)
T ss_dssp --CCSEECC-EESCEEEECTTCEEECCGGGTCCSCTTT-SSSCCCCCEEEEEEEEEEEESCEEECCSSCCEEEE-EEEEE
T ss_pred --CcEEEEe-cCCEEEEcCCCeEEECCccccccccCcC-CCCCCceEEEEeeeCcEEEEEEEEEeCCccEEEEE-eCCEE
Confidence 1466655 499999996 379999999999864332 24678999999999999999999999999999999 99999
Q ss_pred EEEEEEECCCC----CCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeE
Q 012788 213 IQNISVHAPPE----SPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVA 288 (456)
Q Consensus 213 i~n~~i~~~~~----~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~ 288 (456)
|++++|.++.+ ++|+||||+.+|+||+|+||+|.++||||++++ .+||+|+||+|.. +|||+
T Consensus 135 i~~~~I~~~~~d~~~~~ntDGidi~~s~nV~I~n~~i~~gDDciaiks------------g~nI~i~n~~~~~--ghGis 200 (336)
T 1nhc_A 135 LNDFTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKNQDDCIAINS------------GESISFTGGTCSG--GHGLS 200 (336)
T ss_dssp EESCEEECTTHHHHTCCSCCSEEECSCEEEEEESCEEESSSEEEEESS------------EEEEEEESCEEES--SSEEE
T ss_pred EEEEEEECCCcccccCCCCCcEEecCCCeEEEEeCEEEcCCCEEEEeC------------CeEEEEEeEEEEC--CcCce
Confidence 99999999854 799999999999999999999999999999998 4999999999996 78999
Q ss_pred ecccc---cCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCcce-eEEEeccCCCCCCCCCCCCCCCe
Q 012788 289 FGSEM---SGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINV-AFGACGNCGSHPDDDFDPDALPA 364 (456)
Q Consensus 289 igs~~---~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~-~i~i~~~y~~~~~~~~~~~~~~~ 364 (456)
|||+. .+.++||+|+||+|.++.+|++||+|++++|+|+||+|+|++|++++. ||.|++.|++. .....|...+.
T Consensus 201 iGS~g~~~~~~v~nV~v~n~~~~~t~~girIkt~~g~~G~v~nI~~~ni~~~~v~~~~i~i~~~y~~~-~~~~~p~~~~~ 279 (336)
T 1nhc_A 201 IGSVGGRDDNTVKNVTISDSTVSNSANGVRIKTIYKETGDVSEITYSNIQLSGITDYGIVIEQDYENG-SPTGTPSTGIP 279 (336)
T ss_dssp EEEESSSSCCEEEEEEEEEEEEESCSEEEEEEEETTCCCEEEEEEEEEEEEEEESSEEEEEEEEEETT-EECSCCCSSSC
T ss_pred EccCccccCCCEEEEEEEeeEEECCCcEEEEEEECCCCCEEeeeEEeeEEeeccccccEEEEeecCCC-CCCCCCCCCce
Confidence 99963 368999999999999999999999999889999999999999999975 99999999862 22233444468
Q ss_pred EEEEEEEEEEeeccc--eeEEEEeeCCCCeeeEEEEeEEEEeCCCCCCcceeeeeee
Q 012788 365 IDQITFKDIIGTNIT--IAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHG 419 (456)
Q Consensus 365 i~nIt~~nI~~~~~~--~~~~~~g~~~~~~~~I~~~nv~i~~~~~~~~~~~c~~v~g 419 (456)
|+||+|+||+++... .++.|.|. +.||+||+|+||+++... ..+.|+|+..
T Consensus 280 i~~i~~~ni~gt~~~~~~~v~i~c~-~~~c~ni~~~nv~i~~~~---~~~~C~n~~~ 332 (336)
T 1nhc_A 280 ITDVTVDGVTGTLEDDATQVYILCG-DGSCSDWTWSGVDLSGGK---TSDKCENVPS 332 (336)
T ss_dssp EEEEEEEEEEEEECTTCEEEEEECC-TTCEEEEEEEEEEEESSB---CCSCCBSCCT
T ss_pred EEEEEEEeEEEEeCCCCEEEEEEcC-CCcEecEEEEeEEEEcCC---CCcccCCCCC
Confidence 999999999999876 68899994 899999999999998632 3567888763
|
| >1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-55 Score=437.95 Aligned_cols=312 Identities=18% Similarity=0.261 Sum_probs=267.2
Q ss_pred hHHHHHHHHHHhhccccCCCcEEEecCCceeeeee-EeccceEEEeccCcEEEecCCCCCCCcCCCCCCCCcccccCCCc
Q 012788 56 NTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSF-NLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRR 134 (456)
Q Consensus 56 dT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~l-~L~s~~tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 134 (456)
-++|||+||++| ++.++++|+||+|+|+. | .|+++++|.++ +++.+. +..|.
T Consensus 11 g~~aiq~ai~~c---~~~gg~~v~vP~G~~l~--l~~l~~~~~l~~~--g~~~~~--~~~w~------------------ 63 (339)
T 1ia5_A 11 GASSASKSKTSC---STIVLSNVAVPSGTTLD--LTKLNDGTHVIFS--GETTFG--YKEWS------------------ 63 (339)
T ss_dssp HHHHHHHHGGGC---SEEEEESCEECTTCCEE--ECSCCTTCEEEEE--SEEEEC--CCCSC------------------
T ss_pred chHHHHHHHHHh---hccCCCeEEECCCEEEE--eeccCCCeEEEEe--CcEEcc--ccccc------------------
Confidence 368999999998 45678899999999983 5 67899999987 344442 23342
Q ss_pred ceeeEEEeeeeeEEEecc-CceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEEeCCcceEEeecccceEE
Q 012788 135 YKSLINGYMLRDVVVTGD-NGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHI 213 (456)
Q Consensus 135 ~~~~i~~~~~~ni~I~G~-~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i 213 (456)
.+|+.+.+ +||+|+|. +|+|||+|+.||+..... ....||++|+|.+|+|++|++++++|+|.|++++..|++++|
T Consensus 64 -g~li~~~~-~nv~I~G~~gG~IdG~G~~~w~~~~~~-~~~~rp~~i~~~~~~nv~i~~i~i~nsp~~~i~i~~~~nv~i 140 (339)
T 1ia5_A 64 -GPLISVSG-SDLTITGASGHSINGDGSRWWDGEGGN-GGKTKPKFFAAHSLTNSVISGLKIVNSPVQVFSVAGSDYLTL 140 (339)
T ss_dssp -CCSEEEEE-ESCEEEECTTCEEECCGGGTCSSCTTT-SSSCCCCCEEEEEEEEEEEESCEEECCSSCCEEEESCEEEEE
T ss_pred -CcEEEEEc-CcEEEEcCCCeEEeCCCCccccccccC-CCCCCCeEEEEeecCcEEEEEEEEEcCCcceEEEecccCeEE
Confidence 14677655 99999996 379999999999864332 246799999999999999999999999999999999999999
Q ss_pred EEEEEECCCC----CCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEe
Q 012788 214 QNISVHAPPE----SPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAF 289 (456)
Q Consensus 214 ~n~~i~~~~~----~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~i 289 (456)
++++|.++.+ ++|+|||++.+|+||+|+||+|.++||||++++ .+||+|+||+|.. +|||+|
T Consensus 141 ~~~~I~~~~~d~~~~~ntDGid~~~s~nV~I~n~~i~~gDDcIaiks------------g~nI~i~n~~~~~--ghGisi 206 (339)
T 1ia5_A 141 KDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNS------------GENIYFSGGYCSG--GHGLSI 206 (339)
T ss_dssp ESCEEECGGGTTTTCCSCCSEEEESCEEEEEESCEEECSSCSEEESS------------EEEEEEESCEEES--SSCEEE
T ss_pred eeEEEECCccccccCCCCCcEEecCCceEEEEeeEEEcCCCeEEEeC------------CeEEEEEeEEEEC--CceEEE
Confidence 9999999743 789999999999999999999999999999998 4999999999996 789999
Q ss_pred cccc---cCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCcce-eEEEeccCCCCCCCCCCCCCCCeE
Q 012788 290 GSEM---SGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINV-AFGACGNCGSHPDDDFDPDALPAI 365 (456)
Q Consensus 290 gs~~---~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~-~i~i~~~y~~~~~~~~~~~~~~~i 365 (456)
||+. .+.++||+|+||+|.++.+|++||+|++++|.|+||+|+||+|++++. ||.|++.|.. + ...|...+.|
T Consensus 207 GS~g~~~~~~v~nV~v~n~~~~~t~~girIKt~~g~~G~v~nI~~~ni~~~~v~~~~i~i~~~y~~-~--~~~p~~~~~i 283 (339)
T 1ia5_A 207 GSVGGRSDNTVKNVTFVDSTIINSDNGVRIKTNIDTTGSVSDVTYKDITLTSIAKYGIVVQQNYGD-T--SSTPTTGVPI 283 (339)
T ss_dssp EEECSSSCCEEEEEEEEEEEEESCSEEEEEEEETTCCCEEEEEEEEEEEEEEESSEEEEEEEEETC-T--TSCCCSSSCE
T ss_pred CcCCcccCCCEEEEEEEeeEEECCCcEEEEEEeCCCCcEEEeeEEEEEEEECcccccEEEEccCCC-C--CCCCcCCceE
Confidence 9953 368999999999999999999999999889999999999999999886 9999999943 2 2234444689
Q ss_pred EEEEEEEEEeeccc--eeEEEEeeCCCCeeeEEEEeEEEEeCCCCCCcceeeeee
Q 012788 366 DQITFKDIIGTNIT--IAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIH 418 (456)
Q Consensus 366 ~nIt~~nI~~~~~~--~~~~~~g~~~~~~~~I~~~nv~i~~~~~~~~~~~c~~v~ 418 (456)
+||+|+||+++... .++.|.|. +.||+||+|+||++++.. ..+.|+|+.
T Consensus 284 ~ni~~~ni~gt~~~~~~~v~i~c~-~~~c~ni~~~nv~i~~~~---~~~~C~n~~ 334 (339)
T 1ia5_A 284 TDFVLDNVHGSVVSSGTNILISCG-SGSCSDWTWTDVSVSGGK---TSSKCTNVP 334 (339)
T ss_dssp EEEEEEEEEEEECTTSEEEEEECC-TTCEEEEEEEEEEEESSB---CCSCCBSCC
T ss_pred EEEEEEeEEEEeCCCCEEEEEEeC-CCCEecEEEEeEEEECCC---CCeeeECCC
Confidence 99999999999875 68899995 899999999999998532 356788876
|
| >1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-56 Score=438.75 Aligned_cols=307 Identities=16% Similarity=0.188 Sum_probs=261.9
Q ss_pred HHHHHHHHHHhhccccCCCcEEEecCCceeeeeeEeccceEEEeccCcEEEecCCCCCCCcCCCCCCCCcccccCCCcce
Q 012788 57 TLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYK 136 (456)
Q Consensus 57 T~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~l~L~s~~tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 136 (456)
++|||+ +++| ++.++++|+||+|+|+ .|.|+++++|.++ +++.+. +..|. .
T Consensus 8 ~~aiq~-i~aC---~~~gg~~v~vP~G~~l--~l~l~~~~~l~~~--g~~~~~--~~~w~-------------------~ 58 (335)
T 1k5c_A 8 VDDAKD-IAGC---SAVTLNGFTVPAGNTL--VLNPDKGATVTMA--GDITFA--KTTLD-------------------G 58 (335)
T ss_dssp TTGGGG-CTTC---SEEEECCEEECTTCCE--EECCCTTCEEEEC--SCEEEC--CCCSC-------------------S
T ss_pred HHHhHH-HHhc---ccCCCCEEEECCCEEE--EEEeCCCeEEEEe--ccEecc--ccccc-------------------C
Confidence 689999 8887 4567889999999998 5788899999887 345542 23342 1
Q ss_pred eeEEEeeeeeEEEec-cCceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEEeCCcceEEeecccc-eEEE
Q 012788 137 SLINGYMLRDVVVTG-DNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSN-VHIQ 214 (456)
Q Consensus 137 ~~i~~~~~~ni~I~G-~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~n-v~i~ 214 (456)
+||.+. .+||+|+| . |+|||+|+.||+..... ....||++|+|.+|+ ++|+|++++|+|+|++++..|++ |+|+
T Consensus 59 ~~i~~~-~~ni~I~G~~-G~idG~G~~ww~~~~~~-~~~~rP~~i~~~~~~-v~i~giti~nsp~~~i~i~~~~n~v~i~ 134 (335)
T 1k5c_A 59 PLFTID-GTGINFVGAD-HIFDGNGALYWDGKGTN-NGTHKPHPFLKIKGS-GTYKKFEVLNSPAQAISVGPTDAHLTLD 134 (335)
T ss_dssp CSEEEE-EEEEEEECTT-CEEECCGGGTCCSCTTT-SSSCCCCCSEEEEEE-EEEESCEEESCSSCCEEEEEEEEEEEEE
T ss_pred cEEEEE-ccCEEEEeCc-cEEcCChhHhhhccccc-CCCCCCeEEEEeceE-EEEEEEEEECCCcceEEEEccCCeEEEE
Confidence 467765 59999999 5 99999999999864432 246799999999999 99999999999999999999999 9999
Q ss_pred EEEEECCCC-----CCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEe
Q 012788 215 NISVHAPPE-----SPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAF 289 (456)
Q Consensus 215 n~~i~~~~~-----~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~i 289 (456)
|++|.++.+ ++|+||||+ +|+||+|+||+|.++||||++|+ .+||+|+||+|.. +|||+|
T Consensus 135 ~v~I~~~~~d~~~~~~NtDGidi-~s~nV~I~n~~i~~gDDcIaiks------------g~nI~i~n~~~~~--ghGisI 199 (335)
T 1k5c_A 135 GITVDDFAGDTKNLGHNTDGFDV-SANNVTIQNCIVKNQDDCIAIND------------GNNIRFENNQCSG--GHGISI 199 (335)
T ss_dssp SCEEECGGGGGGGCCCSCCSEEE-ECSSEEEESCEEESSSCSEEEEE------------EEEEEEESCEEES--SCCEEE
T ss_pred EEEEECCCCcccccCCCCCeEcc-cCCeEEEEeeEEEcCCCEEEeeC------------CeeEEEEEEEEEC--CccCeE
Confidence 999999743 899999999 99999999999999999999998 4999999999996 799999
Q ss_pred cccc-cCcEEeEEEEeEEEECCcceEEEEecCCCC-ceEEeEEEEceEecCcc-eeEEEeccCCCCCCCCCCCCCCCeEE
Q 012788 290 GSEM-SGGISNVQVEKIHLYDSLNGIEFRTTKGRG-GYIRQIVISDAELYNIN-VAFGACGNCGSHPDDDFDPDALPAID 366 (456)
Q Consensus 290 gs~~-~~~v~nI~v~n~~~~~~~~gi~iks~~g~~-g~v~nI~~~ni~~~~~~-~~i~i~~~y~~~~~~~~~~~~~~~i~ 366 (456)
||++ .+.|+||+|+||+|.++.+|+|||+|++++ |.|+||+|+||+|++++ +||.|++.|.. +. ..|...+.|+
T Consensus 200 GS~g~~~~v~nV~v~n~~~~~t~~girIKt~~g~~~G~v~nI~f~ni~~~~v~~~~i~i~~~Y~~-~~--~~p~~~~~i~ 276 (335)
T 1k5c_A 200 GSIATGKHVSNVVIKGNTVTRSMYGVRIKAQRTATSASVSGVTYDANTISGIAKYGVLISQSYPD-DV--GNPGTGAPFS 276 (335)
T ss_dssp EEECTTCEEEEEEEESCEEEEEEEEEEEEEETTCCSCEEEEEEEESCEEEEEEEEEEEEEEEETS-SS--SSCCSSSCEE
T ss_pred eeccCCCCEEEEEEEeeEEECCCceEEEEEeCCCCcceEeeeEEEEEEEEccccccEEEEeeCCC-CC--CCCCCCceEE
Confidence 9997 689999999999999999999999999888 99999999999999997 79999999942 21 2344346899
Q ss_pred EEEEEEEE--eecc--ceeEEEEeeCCCCeeeEEEEeEEEEeCCCCCCcceeeeee
Q 012788 367 QITFKDII--GTNI--TIAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIH 418 (456)
Q Consensus 367 nIt~~nI~--~~~~--~~~~~~~g~~~~~~~~I~~~nv~i~~~~~~~~~~~c~~v~ 418 (456)
||+|+||+ ++.. ..++.|.|.+ ||+||+|+||+++..... ...|.++.
T Consensus 277 nI~~~nI~~~Gt~~~~~~~i~i~c~~--~c~ni~~~nv~i~~~~~~--~~~~~~~~ 328 (335)
T 1k5c_A 277 DVNFTGGATTIKVNNAATRVTVECGN--CSGNWNWSQLTVTGGKAG--TIKSDKAK 328 (335)
T ss_dssp EEEECSSCEEEEECTTCEEEEEECSS--EESEEEEEEEEEESSBCC--CEECTTCE
T ss_pred EEEEEEEEEeeEEcCCceEEEEECCC--cCCCEEEEeEEEEcCCCC--ceEeEEeE
Confidence 99999999 7765 3588899976 999999999999886543 34444444
|
| >2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-51 Score=423.09 Aligned_cols=300 Identities=16% Similarity=0.132 Sum_probs=252.6
Q ss_pred CceEEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCC-ceee------------eeeEeccceEEEeccCc
Q 012788 38 PHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSG-KWLT------------GSFNLTSHLTLFLEKGA 104 (456)
Q Consensus 38 ~~~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G-~Yl~------------g~l~L~s~~tL~l~~ga 104 (456)
+.++||++|||+|| ||+|||+||++| ++.+|++|+||+| +|++ |+|.|+|+++|+|+.
T Consensus 49 ~~~~nV~dfGA~gD----dT~AIqkAIdaC---s~~GGgtV~VPaG~tYLt~sv~~gp~~~~sGpI~LkSnVtL~LdG-- 119 (600)
T 2x6w_A 49 DPSGNVIQPGPNVD----SRQYLQAAIDYV---SSNGGGTITIPAGYTWYLGSYGVGGIAGHSGIIQLRSNVNLNIEG-- 119 (600)
T ss_dssp CTTSCBCCCCTTCC----CHHHHHHHHHHH---HHTTCEEEEECTTCEEEECSCCCGGGGGGTEEEECCTTEEEEECS--
T ss_pred CcEEeeecCCCCcc----CHHHHHHHHHHh---hhcCCCEEEECCCCEEEecccccccccccccceEEcCceEEeeec--
Confidence 46799999999999 999999999988 4578999999999 9999 999999999999985
Q ss_pred EEEecCCCCCCCcCCCCCCCCcccccCCCcceeeEEEeeeeeEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEEe
Q 012788 105 VILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFIS 184 (456)
Q Consensus 105 ~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~ 184 (456)
+|+++.+.++|+...+. ..+|.++|++.+++||+|+|. |+|||+|..||+.. .....||+ +.|.+
T Consensus 120 tL~as~d~~~yp~~~~v----------~~~w~slI~~~~~~NItItG~-GtIDGqG~~wW~~~---~~~~~RP~-l~f~~ 184 (600)
T 2x6w_A 120 RIHLSPFFDLKPFQVFV----------GFDNGDPASSGNLENCHIYGH-GVVDFGGYEFGASS---QLRNGVAF-GRSYN 184 (600)
T ss_dssp EEEECGGGTTSCEEEEE----------CCSSSSGGGCCCEEEEEEESS-CEEECTTCCCSSTT---CCEEEEEC-CSEEE
T ss_pred EEEEcCChHHCcccccc----------cccccceEEEecceeEEEecc-eeeeCCcccccccc---ccCCCCCE-EEEee
Confidence 99999999999642100 134566788899999999997 99999999999632 11224677 88999
Q ss_pred eccEEEEeEEEEeC-CcceEEe---ecccceEEEEEE----EECCCCCCCCceeeecCccCEEEEecEEecCCceEec-C
Q 012788 185 SENVVVSNLTFLNA-PAYNIHP---VYCSNVHIQNIS----VHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISL-K 255 (456)
Q Consensus 185 ~~nv~I~~v~i~ns-~~~~i~~---~~~~nv~i~n~~----i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai-~ 255 (456)
|+ |+|++++|+ |.|++++ ..|+||+|+|++ |.+ ++|+||| |+|+||+|.++||||++ |
T Consensus 185 c~---I~GITi~NSDP~w~I~iG~~~~c~NVtI~nvtfi~aI~s---spNTDGI-------V~I~nc~I~tGDDCIAI~K 251 (600)
T 2x6w_A 185 CS---VTGITFQNGDVTWAITLGWNGYGSNCYVRKCRFINLVNS---SVNADHS-------TVYVNCPYSGVESCYFSMS 251 (600)
T ss_dssp EE---EESCEEESCCCSCSEEECBTTBEEEEEEESCEEECCCCC---SSCCCEE-------EEEECSSSEEEESCEEECC
T ss_pred eE---EeCeEEECCCCccEEEeCCCCCcccEEEeCeEEcceEec---CCCCCEE-------EEEEeeEEecCCcEEEEec
Confidence 98 999999999 9999999 999999999999 776 7899999 99999999999999999 9
Q ss_pred CCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceE
Q 012788 256 SGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAE 335 (456)
Q Consensus 256 sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~ 335 (456)
+++ ..++.++ ++... ++||+|||++.+.|+||+|+| +||++.+++|.|+||+|+||+
T Consensus 252 SGs----------~~ni~~e--~~~~G-HgGISIGSe~~ggV~NV~V~N----------rIKt~~G~GG~V~NItfeNI~ 308 (600)
T 2x6w_A 252 SSF----------ARNIACS--VQLHQ-HDTFYRGSTVNGYCRGAYVVM----------HAAEAAGAGSYAYNMQVENNI 308 (600)
T ss_dssp CTT----------HHHHEEE--EEECS-SSEEEESCEEEEESEEEEEEE----------CGGGCTTTCSEEEEEEEESCE
T ss_pred CCC----------cCCeEEE--EEcCC-CCcEEecccccCcEEEEEEEE----------EEEeecCCCceEEEEEEEEEE
Confidence 973 3456777 45443 559999999989999999999 778888889999999999999
Q ss_pred ecCcceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeecccee-------EEEEeeCC-------CCeeeEEEEeEE
Q 012788 336 LYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIA-------GNFTGIQE-------APFANICLSNIS 401 (456)
Q Consensus 336 ~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~-------~~~~g~~~-------~~~~~I~~~nv~ 401 (456)
|++++++|.+++... ....+.|+||+|+||+++....+ ..+.|.++ .++++|+|+|++
T Consensus 309 m~nV~~~I~i~q~~~--------~~s~~~IsnItfkNItgTsas~aav~~~~g~~i~g~p~~~~~~~~~~Ie~V~~~~~~ 380 (600)
T 2x6w_A 309 AVIYGQFVILGSDVT--------ATVSGHLNDVIVSGNIVSIGERAAFSAPFGAFIDIGPDNSGASNVQDIQRVLVTGNS 380 (600)
T ss_dssp EEESSEEEEEEECBC--------SSCBCEEEEEEEESCEEEECSCCTTSSSCEEEEEECCCTTCCSSSCCEEEEEEESCE
T ss_pred EEccceEEEeCCCCC--------CCCCceEEEEEEEeEEEEeccccccccccceEEEecCcccccccccceeEEEEeceE
Confidence 999999998886521 12336999999999999976432 45666553 689999999999
Q ss_pred EEeC
Q 012788 402 LSIN 405 (456)
Q Consensus 402 i~~~ 405 (456)
+...
T Consensus 381 ~~~~ 384 (600)
T 2x6w_A 381 FYAP 384 (600)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9653
|
| >1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-44 Score=375.10 Aligned_cols=306 Identities=12% Similarity=0.142 Sum_probs=244.1
Q ss_pred eecCccCCCCCchHHHHHHHHHHhhcccc-----------------------CCCcEEEecCCceee---eeeEeccceE
Q 012788 44 TEFGAVGDGKTLNTLAFQNAIFYLKSFAD-----------------------KGGAQLYVPSGKWLT---GSFNLTSHLT 97 (456)
Q Consensus 44 ~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~-----------------------~gg~~v~iP~G~Yl~---g~l~L~s~~t 97 (456)
..|||++||.++.+.+|. ++..++.-.. .++++|+||+|+|++ |+|.|+|+++
T Consensus 146 ~~~~~~~dg~~~~~~~l~-ifa~p~~~~~~~P~~~~~~~~~~~~g~~~~~~~~ggg~v~vP~G~yl~g~~G~i~l~s~~~ 224 (549)
T 1x0c_A 146 DLISLAPSGARQPENALL-IFASPFENSSTKPQPGSPNSIAPAPGRVLGLNTTSASTVVFNPGVYYFTGHDHMVLSSSVT 224 (549)
T ss_dssp GEEEETTTTEEEESEEEE-EEEECCCCTTTSCCTTCSSEECCCSEECCCTTTCCCSEEEECSEEEECCTTCCEEECTTCC
T ss_pred ccccccccCcCCCcceEE-EEcCChhhccCCCCcCCCCceeeccccccccccCCCCEEEECCeEEecCCceEEEecCCCC
Confidence 359999999999999887 4433321111 468999999999997 5899999999
Q ss_pred -EEeccCcEEEecCCCCCCCcCCCCCCCCcccccCCCcceeeEEEeeeeeEEEeccCceeeCCCcccccccccCC--CCC
Q 012788 98 -LFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQS--LNY 174 (456)
Q Consensus 98 -L~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~~--~~~ 174 (456)
|+|++|+.|+++ ++...+++||+|+|. |+|||+|..||......- ...
T Consensus 225 ~L~l~~GA~L~gs----------------------------~~~~~~~~nv~ItG~-GtIDG~G~~ww~~~~~~~~~~~~ 275 (549)
T 1x0c_A 225 WVYFAPGAYVKGA----------------------------VEFLSTASEVKASGH-GVLSGEQYVWYADPDEGYQKASG 275 (549)
T ss_dssp EEEECTTEEEESC----------------------------EEECCCSSEEEEESS-CEEECTTSCTTEEGGGTTEECGG
T ss_pred eEecCCCCEEEEE----------------------------EEEecCceeEEEEee-EEEECCCceecccCccccccccc
Confidence 999999998752 222338999999997 999999999995321110 112
Q ss_pred CCCeeEEE------EeeccEEEEeEEEEeCCcceEEee-cc-cc--eEEEEEEEECCCCCCCCceeeecCccCEEEEecE
Q 012788 175 SRPHLVEF------ISSENVVVSNLTFLNAPAYNIHPV-YC-SN--VHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCI 244 (456)
Q Consensus 175 ~rp~~i~~------~~~~nv~I~~v~i~ns~~~~i~~~-~~-~n--v~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~ 244 (456)
.||++|.| .+|+|++|+|++++|+|+|++++. .| ++ ++|+|+++.++. .+|+|||++. +||+|+||+
T Consensus 276 ~rp~~i~~~~~~~~~~c~nV~I~Giti~Nsp~w~i~i~~~~~~ni~V~I~n~~i~~~~-~~NTDGidi~--~nV~I~n~~ 352 (549)
T 1x0c_A 276 ANNNGLRMWRGTLGNSSQTFVLNGVTVSAPPFNSMDWSGNSLDLITCRVDDYKQVGAF-YGQTDGLEMY--PGTILQDVF 352 (549)
T ss_dssp GCSCCCCSEEEECCSSCEEEEEESCEEECCSSCSEEEECSCGGGEEEEEEEEEEECCC-BTTCCCCBCC--TTCEEEEEE
T ss_pred CCCceEEEeeccccCCceEEEEECcEEECCCceeEEeeccCCCCCeEEEEeeEeEcCC-CCCCCccccc--CCEEEEeeE
Confidence 37888888 999999999999999999999955 56 69 999999999854 4689999998 999999999
Q ss_pred EecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCe-eEecccccCcEEeEEEEeEEEECCcc------eEEEE
Q 012788 245 IAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSS-VAFGSEMSGGISNVQVEKIHLYDSLN------GIEFR 317 (456)
Q Consensus 245 i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~g-i~igs~~~~~v~nI~v~n~~~~~~~~------gi~ik 317 (456)
|.++||||++++ +||+|+||+|+.+.+++ |+|||+ .+.++||+|+||+|.++.. |..|+
T Consensus 353 i~~gDDcIaIks-------------~NI~I~n~~~~~~~g~~~IsiGs~-~~~V~NV~v~n~~i~~s~~~k~~~~g~iI~ 418 (549)
T 1x0c_A 353 YHTDDDGLKMYY-------------SNVTARNIVMWKESVAPVVEFGWT-PRNTENVLFDNVDVIHQAYANAGNNPGIFG 418 (549)
T ss_dssp EEESSCCEECCS-------------SSEEEEEEEEEECSSSCSEECCBS-CCCEEEEEEEEEEEEECCCCSGGGCCCSEE
T ss_pred EeCCCCEEEECC-------------CCEEEEeeEEEcCCCCceEEECCC-CCcEEEEEEEeeEEECccccccccceEEEe
Confidence 999999999985 99999999998654667 999995 6789999999999998763 55588
Q ss_pred e---c--C------CCCceEEeEEEEceEecCcc-eeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccc------
Q 012788 318 T---T--K------GRGGYIRQIVISDAELYNIN-VAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT------ 379 (456)
Q Consensus 318 s---~--~------g~~g~v~nI~~~ni~~~~~~-~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~------ 379 (456)
+ + . +.+|.|+||+|+||+|+++. +++.+.+.+. .|. ..|+||+|+||+++...
T Consensus 419 ~~~~~~~g~~~~~~d~~G~i~nI~f~NI~i~nv~~~g~~~~~~~g-------~pg--~~I~nI~i~NI~i~~~~~~~~~~ 489 (549)
T 1x0c_A 419 AVNNYLYAPDGLSSNHSTGNSNMTVRNITWSNFRAEGSSSALFRI-------NPI--QNLDNISIKNVSIESFEPLSINT 489 (549)
T ss_dssp ECCBTTTCTTSCCSCCCCBEEEEEEEEEEEEEEEEEEEECCSEEE-------CCS--EEEEEEEEEEEEEEEECCGGGTC
T ss_pred cccccccCccccCcCCCceEccEEEEeEEEEeEEEeceEEeeecC-------CCC--CcCccEEEEEEEEEccccccccc
Confidence 7 2 1 12679999999999999987 7766544321 122 26999999999987654
Q ss_pred eeEEEEeeCC------CCeeeEEEEeEEEEeC
Q 012788 380 IAGNFTGIQE------APFANICLSNISLSIN 405 (456)
Q Consensus 380 ~~~~~~g~~~------~~~~~I~~~nv~i~~~ 405 (456)
.+..+.|.+. .+|+||+|+||++.+.
T Consensus 490 ~~~~i~G~~~~~~~~~~~v~nI~f~NV~i~G~ 521 (549)
T 1x0c_A 490 TESWMPVWYDLNNGKQITVTDFSIEGFTVGNT 521 (549)
T ss_dssp SCEEECCCBBTTTCCBCCEEEEEEEEEEETTE
T ss_pred cceEEeCCCccccccceeeeeEEEEeEEEeCe
Confidence 2455666543 7899999999999654
|
| >1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=355.27 Aligned_cols=269 Identities=16% Similarity=0.185 Sum_probs=221.9
Q ss_pred CCCcEEEecCCceee-------------eeeEeccceE-EEeccCcEEEecCCCCCCCcCCCCCCCCcccccCCCcceee
Q 012788 73 KGGAQLYVPSGKWLT-------------GSFNLTSHLT-LFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSL 138 (456)
Q Consensus 73 ~gg~~v~iP~G~Yl~-------------g~l~L~s~~t-L~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 138 (456)
.++++||||+|+|++ |+|.|+|+++ |+|++||+|++ +
T Consensus 229 ~ggg~v~vP~G~yl~~~~~~~gpc~~g~G~i~lkSnvt~L~L~~GA~l~g-----------------------------~ 279 (574)
T 1ogo_X 229 GAKSILYFPPGVYWMNQDQSGNSGKLGSNHIRLNSNTYWVYLAPGAYVKG-----------------------------A 279 (574)
T ss_dssp CSSSEEEECSEEEEECBCTTCCBSCSSSCCEECCTTCCEEEECTTEEEES-----------------------------C
T ss_pred CCCCEEEECCcEEEEeccccCCcccccceEEEecCCCceEEecCCcEEEc-----------------------------c
Confidence 588999999999999 5799999999 99999999864 2
Q ss_pred EEEeeeeeEEEeccCceeeCCCcccccccccC-CCCCCCCeeEEEE------eeccEEEEeEEEEeCCcceEEeecccce
Q 012788 139 INGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQ-SLNYSRPHLVEFI------SSENVVVSNLTFLNAPAYNIHPVYCSNV 211 (456)
Q Consensus 139 i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~-~~~~~rp~~i~~~------~~~nv~I~~v~i~ns~~~~i~~~~~~nv 211 (456)
+.+.+++||+|+|. |+|||+|..||...... .....||++++|. +|+||+|+|++++|+|+|++++..|++|
T Consensus 280 i~~~~~~nv~ItG~-GtIDG~G~~ww~~~~~~~~~~~~rp~~i~~~~~~~~~~c~NV~I~Giti~NSp~w~i~~~~c~nV 358 (574)
T 1ogo_X 280 IEYFTKQNFYATGH-GILSGENYVYQANAGDNYIAVKSDSTSLRMWWHNNLGGGQTWYCVGPTINAPPFNTMDFNGNSGI 358 (574)
T ss_dssp EEECCSSCEEEESS-CEEECTTSCTTCBTTTTTBSCCCTTTBCCSEEECSCCSSEEEEEESCEEECCSSCSEEECSSSCE
T ss_pred EEEeCceeEEEEeC-EEEeCCCcccccccccccccccCCcceEEEEeccccCCceeEEEECeEEECCCCcEEeecCCCCh
Confidence 45678999999997 99999999999642211 1122478888888 9999999999999999999999999999
Q ss_pred --EEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCe-eE
Q 012788 212 --HIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSS-VA 288 (456)
Q Consensus 212 --~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~g-i~ 288 (456)
+|+|+++.++. ..|+||||+. +||+|+||+|.++||||++|+ +||+|+||+++...+++ |+
T Consensus 359 ~~~I~nv~i~~~~-~~nTDGIDi~--~NV~I~nc~I~~gDDcIaIks-------------~NI~I~nc~i~~g~g~g~Is 422 (574)
T 1ogo_X 359 SSQISDYKQVGAF-FFQTDGPEIY--PNSVVHDVFWHVNDDAIKIYY-------------SGASVSRATIWKCHNDPIIQ 422 (574)
T ss_dssp EEEEEEEEEECCC-STTCCCCBCC--TTCEEEEEEEEESSCSEECCS-------------TTCEEEEEEEEECSSSCSEE
T ss_pred hhEEEeeEeeCCC-CCCCccCccc--CCEEEEeeEEECCCCEEEECC-------------ccEEEEeEEEECCCCCceEE
Confidence 99999998753 3469999998 999999999999999999985 99999999998754567 99
Q ss_pred ecccccCcEEeEEEEeEEEECCcc--------eEEEEe----------cCCCCceEEeEEEEceEecCcceeEEEeccCC
Q 012788 289 FGSEMSGGISNVQVEKIHLYDSLN--------GIEFRT----------TKGRGGYIRQIVISDAELYNINVAFGACGNCG 350 (456)
Q Consensus 289 igs~~~~~v~nI~v~n~~~~~~~~--------gi~iks----------~~g~~g~v~nI~~~ni~~~~~~~~i~i~~~y~ 350 (456)
|||. .+.++||+|+||+|.++.. +..|.+ .. ..| | ||+|+||+|+++++++ |.. +
T Consensus 423 IGS~-~g~V~NV~v~N~~i~~~~~~~~~~~~~g~iiGs~~~y~~~~~~~~-g~g-V-NI~f~NI~~~~v~~~i-i~i-~- 495 (574)
T 1ogo_X 423 MGWT-SRDISGVTIDTLNVIHTRYIKSETVVPSAIIGASPFYASGMSPDS-RKS-I-SMTVSNVVCEGLCPSL-FRI-T- 495 (574)
T ss_dssp CCSS-CCCEEEEEEEEEEEEECCCSSCCTTTTCEEEEECCCSSSSCCCEE-EEE-E-EEEEEEEEECSSBCEE-EEE-C-
T ss_pred EcCC-CCcEEEEEEEeEEEECCcccceeccccceeeccccccccccccCC-Cce-E-EEEEEeEEEEceeEee-EEE-C-
Confidence 9995 6899999999999988753 333221 11 124 8 9999999999999885 433 1
Q ss_pred CCCCCCCCCCCCCeEEEEEEEEEEeec------cc-eeEEEEeeCCCCeeeEEEEeEEEEeC
Q 012788 351 SHPDDDFDPDALPAIDQITFKDIIGTN------IT-IAGNFTGIQEAPFANICLSNISLSIN 405 (456)
Q Consensus 351 ~~~~~~~~~~~~~~i~nIt~~nI~~~~------~~-~~~~~~g~~~~~~~~I~~~nv~i~~~ 405 (456)
| .+.|+||+|+||++++ .. .+..+.|.+ .+|+||+|+||++.+.
T Consensus 496 --------p--~~~I~nI~~~NI~i~g~~~~~~~~~~~~~i~G~~-~~v~nI~~~NV~i~g~ 546 (574)
T 1ogo_X 496 --------P--LQNYKNFVVKNVAFPDGLQTNSIGTGESIIPAAS-GLTMGLAISAWTIGGQ 546 (574)
T ss_dssp --------C--SEEEEEEEEEEEEETTCBCCSTTCTTCEEECCCT-TCCEEEEEEEEEETTE
T ss_pred --------C--CCCEEEEEEEeEEEeCccccccccccceeEecCC-CccceEEEEeEEEeCE
Confidence 1 1479999999999775 22 245677777 9999999999999654
|
| >3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=345.80 Aligned_cols=303 Identities=18% Similarity=0.222 Sum_probs=233.2
Q ss_pred CceEEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCCceee-eeeEeccceEEEecc--CcEEEecCCCCC
Q 012788 38 PHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLT-GSFNLTSHLTLFLEK--GAVILGSQNPSH 114 (456)
Q Consensus 38 ~~~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~-g~l~L~s~~tL~l~~--ga~i~~~~~~~~ 114 (456)
+..+||+||||+|||++|||+|||+||++ + ++|+||+|+|++ ++|.|+++++|+++. .++|+++.+...
T Consensus 20 ~~~~nV~dfGA~gDG~tDdT~Aiq~Ai~~-------G-g~V~iP~GtYlis~~l~l~snv~L~g~g~~~t~L~~~~~~p~ 91 (609)
T 3gq8_A 20 QFGVSVKTYGAKGDGVTDDIRAFEKAIES-------G-FPVYVPYGTFMVSRGIKLPSNTVLTGAGKRNAVIRFMDSVGR 91 (609)
T ss_dssp SSSEEGGGGTCCCEEEEECHHHHHHHHHT-------S-SCEEECSEEEEESSCEEECSSEEEEESCTTTEEEEECTTCCS
T ss_pred CcEEEeEecccCCCCCchhHHHHHHHHHc-------C-CEEEECCccEEEeCceEECCCcEEEEeeCCCCEEEeCCCCCC
Confidence 35799999999999999999999999982 3 899999999999 899999999999986 478887655333
Q ss_pred CCcCCCCCCCCcccccCCCcceeeEEEeeeeeEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEE
Q 012788 115 WDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLT 194 (456)
Q Consensus 115 ~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~ 194 (456)
|.. .+.+++++.+.+||+|+| ++|||+++.||...+ .....||++|.|.+|+|++|++++
T Consensus 92 ~~~----------------li~~lI~a~~~~NItItG--~TIDGNG~~~g~~~~--~~g~~RP~lI~f~~c~NV~I~gVt 151 (609)
T 3gq8_A 92 GES----------------LMYNENVTTGNENIFLSS--FTLDGNNKRLGQGIS--GIGGSRESNLSIRACHNVYIRDIE 151 (609)
T ss_dssp SCC----------------SEEESCTTTCCEEEEEEE--EEEECCGGGGCSSCC--CSSTTTTCSEEEESCEEEEEEEEE
T ss_pred CCc----------------eeeeeeeecccccEEEEe--eEEECCccccCcccc--cCCCCCccEEEEEeeceEEEEeeE
Confidence 210 112455667899999999 699999985554321 123579999999999999999999
Q ss_pred EEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecC------ccCEEEEecEEe-cCCceEecCCCCCccccccCC
Q 012788 195 FLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDS------SDNVCIEDCIIA-MGHDAISLKSGWDEYGIAYGR 267 (456)
Q Consensus 195 i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~------s~nV~I~n~~i~-~gDD~iai~sg~~~~g~~~~~ 267 (456)
++|+|.+++. |.++.+ | ||+++++ |+||+|+||+|+ ++||||++++
T Consensus 152 i~NSp~~gI~-------------I~~~~~--N-DGid~DGi~fd~~S~NV~I~Nc~I~~tGDDcIaIks----------- 204 (609)
T 3gq8_A 152 AVDCTLHGID-------------ITCGGL--D-YPYLGDGTTAPNPSENIWIENCEATGFGDDGITTHH----------- 204 (609)
T ss_dssp EESCSSCSEE-------------EECSSS--S-CCCCCTTCCCSSCCEEEEEESCEEESCSSCSEEECS-----------
T ss_pred EEeCCCCCeE-------------EeCCCC--C-ccccCCCccccccceeEEEEeeEEEecCCCEEEecC-----------
Confidence 9999985444 444432 3 6777766 999999999995 5999999987
Q ss_pred CcccEEEEEEEEecCC----CCeeEecccccCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEc-eEecCcc-e
Q 012788 268 PTTDVHIRRVLLQSSS----GSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISD-AELYNIN-V 341 (456)
Q Consensus 268 ~s~ni~I~n~~~~~~~----~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~n-i~~~~~~-~ 341 (456)
++||+|+||+|.++. ++||+|++ +.+||+|+||++.++.+|++||++. +++.++||+|+| +.+++++ +
T Consensus 205 -seNI~I~Nc~~~gp~G~S~~~GIsIGs----gs~NVtV~Nc~i~nt~~GIrIKt~~-~~~~v~NV~I~n~vs~~nvrsy 278 (609)
T 3gq8_A 205 -SQYINILNCYSHDPRLTANCNGFEIDD----GSRHVVLSNNRSKGCYGGIEIKAHG-DAPAAYNISINGHMSVEDVRSY 278 (609)
T ss_dssp -CEEEEEESCEEECCSSCSSCCSEEECT----TCEEEEEESEEEESSSEEEEEEECT-TSCCCEEEEEEEEEEESCSEEE
T ss_pred -CeeEEEEeEEEECCCCCCCcccEEccC----CcccEEEEeeEEECCCCEEEEEecC-CCCccccEEEECCEeecCceEe
Confidence 899999999996542 58999985 3499999999999999999999975 468999999999 5667754 5
Q ss_pred eEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccc-----------eeEEE-------------EeeCC--------
Q 012788 342 AFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT-----------IAGNF-------------TGIQE-------- 389 (456)
Q Consensus 342 ~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~-----------~~~~~-------------~g~~~-------- 389 (456)
.++.-++|.. . +|.. ....||+++|+...... ++..+ .+.+.
T Consensus 279 n~r~iG~~~a--~---dp~s-~~a~nV~l~n~~~~~p~~~~~~y~~~~~r~l~vs~~~~v~i~~~~~~~d~~y~~~~~~~ 352 (609)
T 3gq8_A 279 NFRHIGHHAA--T---APQS-VSAKNIVASNLVSIRPNNKRGFQDNATPRVLAVSAYYGVVINGLTGYTDDPNLLTETVV 352 (609)
T ss_dssp EEEETTSCST--T---SCCC-SSCEEEEEEEEEEESCCCTTCHHHHCCCEEEEEESCEEEEEEEEEEECSCTTSCCSEEE
T ss_pred cceEEccccC--C---CCCc-ceecceEeecceEEeecccCceeeCCCcceEEEEcCCCeEEcCceEccCCccccCCceE
Confidence 6666555532 0 1222 25689999999887532 12211 22222
Q ss_pred ---CCeeeEEEEeEEEEeCCC
Q 012788 390 ---APFANICLSNISLSINPG 407 (456)
Q Consensus 390 ---~~~~~I~~~nv~i~~~~~ 407 (456)
..+++|.|+||++.+-..
T Consensus 353 ~~q~~~~~~~l~~~~i~gf~~ 373 (609)
T 3gq8_A 353 SVQFRARNCSLNGVVLTGFSN 373 (609)
T ss_dssp EEETTCEEEEEEEEEEESCTT
T ss_pred EEEEecceeEEcceEEecccC
Confidence 257899999999987554
|
| >1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-40 Score=339.53 Aligned_cols=271 Identities=17% Similarity=0.203 Sum_probs=211.4
Q ss_pred CCCCCceEE-EeecCccCCCCCchHHHHHHHHHHhhccccC-CCcEEEecCCceeeeeeEeccceEEEeccCcEEEecCC
Q 012788 34 LDPRPHSVS-ITEFGAVGDGKTLNTLAFQNAIFYLKSFADK-GGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQN 111 (456)
Q Consensus 34 ~~~~~~~~~-v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~-gg~~v~iP~G~Yl~g~l~L~s~~tL~l~~ga~i~~~~~ 111 (456)
+..+...++ |++|||+|||++|||+|||+||++| ++. ++++|+||+|+|++++|.|+|+++|+|+.|++|+++.+
T Consensus 15 p~~~~~~~~~V~dfGA~gDG~tDdT~Aiq~Aidac---~~~~ggg~V~vP~GtYl~g~I~lks~v~L~l~~GatL~~s~~ 91 (464)
T 1h80_A 15 PTQQDVNYDLVDDFGANGNDTSDDSNALQRAINAI---SRKPNGGTLLIPNGTYHFLGIQMKSNVHIRVESDVIIKPTWN 91 (464)
T ss_dssp CSCCSEEEEHHHHHCCCTTSSSBCHHHHHHHHHHH---HTSTTCEEEEECSSEEEECSEECCTTEEEEECTTCEEEECCC
T ss_pred CCCCcceeeehhccCcCCCCCchhHHHHHHHHHHH---hhccCCcEEEECCCeEEEeeEeccCceEEEEcCCcEEEeccC
Confidence 345567889 9999999999999999999999988 345 78999999999999999999999999999999999874
Q ss_pred --CCCCCcCCCCCCCCcccccCCCcceeeE--EEeeeeeEEEeccCc---eeeCCCcccccccccCCCCCCCCeeEEEEe
Q 012788 112 --PSHWDVVDPLPSYGRGIELPGRRYKSLI--NGYMLRDVVVTGDNG---TIDGQGSVWWDWFSSQSLNYSRPHLVEFIS 184 (456)
Q Consensus 112 --~~~~~~~~~~~~~~~g~~~~~~~~~~~i--~~~~~~ni~I~G~~G---tidG~g~~ww~~~~~~~~~~~rp~~i~~~~ 184 (456)
...|+ .+. ++.+++|++|+|. | +|||+|.. ..+|++|.|.+
T Consensus 92 td~~~y~--------------------~~~~~~~~~~~nItI~G~-Gg~~~iDG~G~~-----------~~rp~~i~~~~ 139 (464)
T 1h80_A 92 GDGKNHR--------------------LFEVGVNNIVRNFSFQGL-GNGFLVDFKDSR-----------DKNLAVFKLGD 139 (464)
T ss_dssp TTCSCEE--------------------EEEESSSSCEEEEEEEEC-TTCEEEECTTCS-----------CCBEEEEEECS
T ss_pred CCcccCC--------------------ceEeecccCccceEEECc-CcceEEeCCCCC-----------CCCceEEEEEe
Confidence 33332 111 2268999999996 8 89988752 34789999999
Q ss_pred eccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccc
Q 012788 185 SENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIA 264 (456)
Q Consensus 185 ~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~ 264 (456)
|+|++|+|++++| .|+++ .|.+|.+ . |+||+++ .|+||+|+||+|.++||++...
T Consensus 140 ~~Nv~I~gIti~n--~w~ih--~s~~V~i-----~------NtDGi~i-~s~nV~I~n~~I~~gddgiGs~--------- 194 (464)
T 1h80_A 140 VRNYKISNFTIDD--NKTIF--ASILVDV-----T------ERNGRLH-WSRNGIIERIKQNNALFGYGLI--------- 194 (464)
T ss_dssp EEEEEEEEEEEEC--CSCBS--CSEEECE-----E------EETTEEE-EEEEEEEEEEEEESCCTTCEEE---------
T ss_pred eccEEEeeeEEec--cceEe--eceeeee-----e------cCCCcee-eccCEEEeceEEecCCCeEEec---------
Confidence 9999999999999 45433 4433322 1 6899999 8999999999999999987420
Q ss_pred cCCCcccEEEEEEEEecCCCCeeEeccc-------ccCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEec
Q 012788 265 YGRPTTDVHIRRVLLQSSSGSSVAFGSE-------MSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELY 337 (456)
Q Consensus 265 ~~~~s~ni~I~n~~~~~~~~~gi~igs~-------~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~ 337 (456)
...+++||+|+||+|.+ ++||+|++. ..+.++||+|+||+|.++..++.|++. .+.++||+|+||++.
T Consensus 195 ~~~~~~NV~V~n~~~~g--g~GIrIktg~d~IG~~~~g~v~NI~~~Ni~~~nv~~~I~I~p~---~~~isnItfeNI~~t 269 (464)
T 1h80_A 195 QTYGADNILFRNLHSEG--GIALRMETDNLLMKNYKQGGIRNIFADNIRCSKGLAAVMFGPH---FMKNGDVQVTNVSSV 269 (464)
T ss_dssp EESEEEEEEEEEEEEES--SEEEEEECCCHHHHHHTCCEEEEEEEEEEEEESSSEEEEEECT---TCBCCCEEEEEEEEE
T ss_pred ccCCEeEEEEEeeEEEC--CCEEEEEeCCceeccCCCCcEEEEEEEeEEEECCceeEEEeCC---CceEeEEEEEEEEEE
Confidence 12249999999999997 789988765 346799999999999999999999964 357899999999999
Q ss_pred CcceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEE
Q 012788 338 NINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDII 374 (456)
Q Consensus 338 ~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~ 374 (456)
+++.++.|++.|++. +++... ...+.+|+|-.
T Consensus 270 ~~~~aI~i~q~y~~~----fd~~~~-~~~~~~~~~~~ 301 (464)
T 1h80_A 270 SCGSAVRSDSGFVEL----FSPTDE-VHTRQSWKQAV 301 (464)
T ss_dssp SSSCSEEECCCCCEE----CC----------------
T ss_pred ccceeEEEecCcccc----cCcccc-ccccceecccc
Confidence 999999999998863 222221 35566665543
|
| >2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-36 Score=294.24 Aligned_cols=228 Identities=22% Similarity=0.253 Sum_probs=185.7
Q ss_pred CceEEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCC----ceeee-eeEeccceEEEeccCcEEEecCCC
Q 012788 38 PHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSG----KWLTG-SFNLTSHLTLFLEKGAVILGSQNP 112 (456)
Q Consensus 38 ~~~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G----~Yl~g-~l~L~s~~tL~l~~ga~i~~~~~~ 112 (456)
+..+||+||||+|||++|||+|||+||++|++ ..+|++|+||+| +|+++ +|.|+|+++|+++.+++|+++...
T Consensus 49 s~~~NVkDFGAkGDGvTDDTaAIQkAIdaA~a--~~GGGtVyVPaG~~~~tYlvt~tI~LkSnV~L~Ge~~AtIl~s~~~ 126 (514)
T 2vbk_A 49 KEAISILDFGVIDDGVTDNYQAIQNAIDAVAS--LPSGGELFIPASNQAVGYIVGSTLLIPGGVNIRGVGKASQLRAKSG 126 (514)
T ss_dssp TTCCBGGGGCCCCSSSSCCHHHHHHHHHHHHT--STTCEEEECCCCSSTTCEEESSCEEECTTEEEECCSTTSEEEECTT
T ss_pred CcEEEeeccCcCCCCCcccHHHHHHHHHHHhh--cCCCeEEEECCCCcceeEEECCeEEecCCeEEEEecCceEeecccc
Confidence 57899999999999999999999999999852 347899999999 89985 899999999999999988765321
Q ss_pred CCCCcCCCCCCCCcccccCCCcceeeEEEeeeeeEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEe
Q 012788 113 SHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSN 192 (456)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~ 192 (456)
. .|. +....|.+++++.+++|++|+|. |+|||++..|+.... ...++..+ .+++|.|++
T Consensus 127 --I----------~Gt-Iia~~y~s~I~~~~VeNIaITG~-GTIDG~g~n~t~e~~----~~Rq~~~~---~fdnV~Vn~ 185 (514)
T 2vbk_A 127 --L----------TGS-VLRLSYDSDTIGRYLRNIRVTGN-NTCNGIDTNITAEDS----VIRQVYGW---VFDNVMVNE 185 (514)
T ss_dssp --C----------CSE-EEEECCCSCCSCEEEESCEEECC-SSSEEEEESCCTTCS----SCCCEESE---EEESCEEEE
T ss_pred --c----------ccc-EEeccCCccccccCceEEEEECC-CeEeCCCCCccccce----eeeccceE---EeeeEEEEe
Confidence 0 111 11234567788899999999996 999998765532111 01122223 367999999
Q ss_pred EEE--EeCCcceEEeecccceEEE-EEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCc
Q 012788 193 LTF--LNAPAYNIHPVYCSNVHIQ-NISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPT 269 (456)
Q Consensus 193 v~i--~ns~~~~i~~~~~~nv~i~-n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s 269 (456)
++. .+++.|++++..|++++++ ++++. .+|+||+|.||+|..|||||++|+|.-..+..+.+|+
T Consensus 186 Vt~~v~~Sg~WTIhPi~Cqnvt~r~gL~f~-------------eSCrNV~IsnC~FsVGDdciaiksGk~~~~~~~~~~s 252 (514)
T 2vbk_A 186 VETAYLMQGLWHSKFIACQAGTCRVGLHFL-------------GQCVSVSVSSCHFSRGNYSADESFGIRIQPQTYAWSS 252 (514)
T ss_dssp EEEEEEEESEEEEEEESCEEEEEEEEEEEE-------------SCCEEEEEESCEEECTTSCCTTCEEEEEECBCCTTTS
T ss_pred EEEeEeccCcEEEeEeccCceecccCcccc-------------CCCCeEEEeccEEecCcceeeeecCceecccccCCcc
Confidence 964 5789999999999999988 66664 2899999999999999999999999887888889999
Q ss_pred ccEEEEEEEEecCCCCeeEeccc-ccCcEEe-EEEEeEEEECCc
Q 012788 270 TDVHIRRVLLQSSSGSSVAFGSE-MSGGISN-VQVEKIHLYDSL 311 (456)
Q Consensus 270 ~ni~I~n~~~~~~~~~gi~igs~-~~~~v~n-I~v~n~~~~~~~ 311 (456)
+|+. ..++.|||| +.++++| |+|++|.|.+++
T Consensus 253 e~~~----------hgav~igSE~m~~Gvk~~v~v~~Clf~~td 286 (514)
T 2vbk_A 253 EAVR----------SEAIILDSETMCIGFKNAVYVHDCLDLHME 286 (514)
T ss_dssp SCBC----------CEEEEEESSEEEESCSEEEEESCCEEEEEE
T ss_pred hhcc----------cccEEECchhhcccccccEEEEeeeccCCc
Confidence 9997 468999999 8999999 999999999874
|
| >2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-31 Score=266.77 Aligned_cols=255 Identities=17% Similarity=0.278 Sum_probs=161.1
Q ss_pred eEEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCCceee--------eeeEeccceEEEec-cC-cEEEec
Q 012788 40 SVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLT--------GSFNLTSHLTLFLE-KG-AVILGS 109 (456)
Q Consensus 40 ~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~--------g~l~L~s~~tL~l~-~g-a~i~~~ 109 (456)
.+||++|||+|||++|||+|||+||++|+ +.+|++|+||+|+|++ ++|.|+|+++|+++ ++ ++|++.
T Consensus 2 ~~~v~~~ga~~dg~~ddt~aiq~Ai~~a~---~~gg~~v~~p~G~y~~~~~~~~~~g~l~~~~~v~l~g~g~~~t~l~~~ 78 (377)
T 2pyg_A 2 DYNVKDFGALGDGVSDDRASIQAAIDAAY---AAGGGTVYLPAGEYRVSAAGEPGDGCLMLKDGVYLAGAGMGETVIKLI 78 (377)
T ss_dssp CEEGGGGTCCCEEEEECHHHHHHHHHHHH---HTTSEEEEECSEEEEECCCSSGGGCSEECCTTEEEEESSBTTEEEEEC
T ss_pred EeeeeecCCCCCCCcchHHHHHHHHHHHH---hcCCCEEEECCeEEEEcccccCCcccEEecCCeEEEEcCCCCcEEEec
Confidence 58999999999999999999999999984 4689999999999998 58999999999998 45 456666
Q ss_pred CCCCCCCcCCCCCCCCcccccCCCcceeeEEEeeeeeEEEeccC----ceeeCCCcccccccccCCCCCCCCeeEEEEee
Q 012788 110 QNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDN----GTIDGQGSVWWDWFSSQSLNYSRPHLVEFISS 185 (456)
Q Consensus 110 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~----GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~ 185 (456)
.+...++.......++. . . ...++++++|.|.. |++|| ||...... .+..|
T Consensus 79 ~~~~~~~~~~~~~~~g~-------~---~-~~~~~~~~~I~G~~~~~~G~idG----w~~~~~~~----------~~~~~ 133 (377)
T 2pyg_A 79 DGSDQKITGMVRSAYGE-------E---T-SNFGMRDLTLDGNRDNTSGKVDG----WFNGYIPG----------GDGAD 133 (377)
T ss_dssp TTCBSCEEEEEECCTTS-------C---C-EEEEEEEEEEECCGGGCBSCEEE----EEECSCTT----------SSCCE
T ss_pred CCCccCccceEeccCCC-------c---c-eEEEEEEEEEECCCccCCccccc----eecccCcc----------ccccc
Confidence 55444321000000111 1 1 23578999999941 78887 88643211 12469
Q ss_pred ccEEEEeEEEEeCCcceEEeeccc-ceEEEEEEEECCC-------------------CCCCCceeeecC-ccCEEEEecE
Q 012788 186 ENVVVSNLTFLNAPAYNIHPVYCS-NVHIQNISVHAPP-------------------ESPYTVGIVPDS-SDNVCIEDCI 244 (456)
Q Consensus 186 ~nv~I~~v~i~ns~~~~i~~~~~~-nv~i~n~~i~~~~-------------------~~~n~DGi~~~~-s~nV~I~n~~ 244 (456)
+|++|++++++|++.|++++..|. +++++|+.+.... ...+.|||++.. |++++|+|++
T Consensus 134 ~nv~I~~~~i~n~~~~gi~~~~~~~~~~i~n~~~~~~~~dGI~~~~s~~~~i~~N~~~~~~~~GI~~~~~s~~v~I~nN~ 213 (377)
T 2pyg_A 134 RDVTIERVEVREMSGYGFDPHEQTINLTIRDSVAHDNGLDGFVADYLVDSVFENNVAYANDRHGFNVVTSTHDFVMTNNV 213 (377)
T ss_dssp EEEEEEEEEEECCSSCSEEECSSEEEEEEESCEEESCSSCSEEEESEEEEEEESCEEESCSSCSEEEETTCEEEEEESCE
T ss_pred cceEEEeEEEEecccceEEeecccCCeEEEeEEeecCCCCceeEeccCCcEEECcEEEccccCcEEEEeccCCeEEECCE
Confidence 999999999999999999998875 6777777774321 012344555443 4455555555
Q ss_pred EecCCceEecCC-CCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECC-cceEEEEecCCC
Q 012788 245 IAMGHDAISLKS-GWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDS-LNGIEFRTTKGR 322 (456)
Q Consensus 245 i~~gDD~iai~s-g~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~-~~gi~iks~~g~ 322 (456)
+...++|+.+.. +. .....++|++|+++++++...+|+.+. .+++++|+|+++.+. ..|++|+.
T Consensus 214 i~~~~~g~~~~~~g~-----~~~~~s~nv~i~~N~~~~n~~~Gi~~~-----~~~~v~i~~N~i~~~~~~GI~i~g---- 279 (377)
T 2pyg_A 214 AYGNGSSGLVVQRGL-----EDLALPSNILIDGGAYYDNAREGVLLK-----MTSDITLQNADIHGNGSSGVRVYG---- 279 (377)
T ss_dssp EESCSSCSEEEECCS-----SCCCCCEEEEEESCEEESCSSCSEEEE-----EEEEEEEESCEEESCSSCSEEEEE----
T ss_pred EECccCceEEEeccc-----cCCCCCccEEEECCEEEcCccCceEec-----cccCeEEECCEEECCCCceEEEec----
Confidence 554444444310 00 001124555555555554324444443 255566666666555 45566552
Q ss_pred CceEEeEEEEceEecCc
Q 012788 323 GGYIRQIVISDAELYNI 339 (456)
Q Consensus 323 ~g~v~nI~~~ni~~~~~ 339 (456)
+++++|+|.++.+.
T Consensus 280 ---~~~~~i~~N~i~~n 293 (377)
T 2pyg_A 280 ---AQDVQILDNQIHDN 293 (377)
T ss_dssp ---EEEEEEESCEEESC
T ss_pred ---CCCcEEECcEEECC
Confidence 45566666666543
|
| >3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-23 Score=219.91 Aligned_cols=245 Identities=18% Similarity=0.203 Sum_probs=180.5
Q ss_pred CCceEEEeecCccCCCCCchHHHHHHHHHHhhccc------cCCCcEEEecCCceeee-eeEeccceEEEeccC--cEEE
Q 012788 37 RPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFA------DKGGAQLYVPSGKWLTG-SFNLTSHLTLFLEKG--AVIL 107 (456)
Q Consensus 37 ~~~~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~------~~gg~~v~iP~G~Yl~g-~l~L~s~~tL~l~~g--a~i~ 107 (456)
-+..+||+||||+|||++|||+|||+||++|.+|. ...+++||||+|+|++. +|.|+++++|..+.. .+|+
T Consensus 46 y~v~~nV~dfGA~GDG~tDDT~Aiq~Ai~~a~~~Gggc~~st~~~~~V~~P~GtYlvs~tI~l~~~t~L~G~~~~~pvIk 125 (758)
T 3eqn_A 46 YPVFRNVKNYGAKGDGNTDDTAAIQAAINAGGRCGQGCDSTTTQPALVYFPPGTYKVSSPLVVLYQTQLIGDAKNLPTLL 125 (758)
T ss_dssp CCSEEEGGGGTCCCEEEEECHHHHHHHHHTTSCSCTTCCCCSSSCEEEEECSSEEEESSCEECCTTEEEEECSSSCCEEE
T ss_pred CeEEEEHHHcCcCCCCCchhHHHHHHHHHHhhhcccccccccccceEEEECCceEEEcccEEccCCeEEEecCCCCCeEe
Confidence 34577999999999999999999999999884210 01126999999999975 899999999999866 4777
Q ss_pred ecCCCCCCCcCCCCCCCCcccccCCCcceeeEEEeeeeeEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEEeecc
Q 012788 108 GSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSEN 187 (456)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~n 187 (456)
+.++... ..+ |.+ ...+++|..||.. ....+..++|
T Consensus 126 a~~~F~G---------------------~~l----------i~~--d~y~~~G~~w~~~-----------~~~F~r~irN 161 (758)
T 3eqn_A 126 AAPNFSG---------------------IAL----------IDA--DPYLAGGAQYYVN-----------QNNFFRSVRN 161 (758)
T ss_dssp ECTTCCS---------------------SCS----------EES--SCBCGGGCBSSCG-----------GGCCCEEEEE
T ss_pred cCCCCCC---------------------cce----------eec--cccCCCCcccccc-----------ccceeeeecc
Confidence 6543211 012 233 3455667788753 1233445667
Q ss_pred EEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCC-CCceeeecCccCEEEEecEEecCCceEecCCCCCccccccC
Q 012788 188 VVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESP-YTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYG 266 (456)
Q Consensus 188 v~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~-n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~ 266 (456)
+.|+ ++-.++...+|++..|++..|+||+|..+..+. ..+||++.++....|+|++|..|+=|+.+.
T Consensus 162 lviD-~t~~~~~~~gIhw~vaQatsL~Nv~i~m~~~sg~~~~GI~~e~GSgg~i~Dl~f~GG~~G~~~g----------- 229 (758)
T 3eqn_A 162 FVID-LRQVSGSATGIHWQVSQATSLINIVFQMSTAAGNQHQGIFMENGSGGFLGDLVFNGGNIGATFG----------- 229 (758)
T ss_dssp EEEE-CTTCSSCEEEEECCCCSSEEEEEEEEECCCSTTCCEEEEEECSCCCCEEEEEEEESCSEEEEEE-----------
T ss_pred eEEe-ccccCCCceEEEEEecCceEEEEEEEEecCCCCCcceeEEecCCCceEEEeeEEeCCceEEEcC-----------
Confidence 7776 555666678999999999999999999987653 489999999899999999999998888773
Q ss_pred CCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcceEEEEecCC---CCceEEeEEEEceEecCcceeE
Q 012788 267 RPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKG---RGGYIRQIVISDAELYNINVAF 343 (456)
Q Consensus 267 ~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~iks~~g---~~g~v~nI~~~ni~~~~~~~~i 343 (456)
.+..+++|.+|.+. ..+|.+.... ..++.+++|.++..||.|..... ....+..+++.|-++.|+..+|
T Consensus 230 --nQQfT~rnltF~~~-~taI~~~w~w-----gwt~~~~~i~nc~vGi~~~~g~~~~~~~q~vGsv~l~Ds~~~n~~~~i 301 (758)
T 3eqn_A 230 --NQQFTVRNLTFNNA-NTAINAIWNW-----GWTFQRITINNCQVGFDLTQGGTSNTGAQGVGAEAIIDAVVTNTQTFV 301 (758)
T ss_dssp --CSCCEEEEEEEESC-SEEEEEEEBS-----CEEEEEEEEESCSEEEEECCCCSSTTSCCCBCEEEEEEEEEESCSEEE
T ss_pred --CcceEEeccEEeCh-HHHHhhhcCc-----eEEEEEeEEECCCccEEEcCCCCCcccCcceeeEEEEEeeEEcccceE
Confidence 46778889999875 5566654322 35666777777778998876321 1234778899999999988666
Q ss_pred EE
Q 012788 344 GA 345 (456)
Q Consensus 344 ~i 345 (456)
..
T Consensus 302 ~t 303 (758)
T 3eqn_A 302 RW 303 (758)
T ss_dssp EE
T ss_pred Ee
Confidence 54
|
| >3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-23 Score=211.58 Aligned_cols=231 Identities=15% Similarity=0.185 Sum_probs=182.2
Q ss_pred eeEEEeeeeeEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEEeC--CcceEEeecccceEEE
Q 012788 137 SLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNA--PAYNIHPVYCSNVHIQ 214 (456)
Q Consensus 137 ~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns--~~~~i~~~~~~nv~i~ 214 (456)
.+|.+.+++|++|+|- ++.- .+.| .+++.+|+|++|++++|.++ ...++++..|+||+|+
T Consensus 191 ~~i~~~~~~nv~i~gi--ti~n--sp~~--------------~i~~~~~~nv~i~~v~I~~~~~NtDGidi~~s~nV~I~ 252 (448)
T 3jur_A 191 SFVQFYRCRNVLVEGV--KIIN--SPMW--------------CIHPVLSENVIIRNIEISSTGPNNDGIDPESCKYMLIE 252 (448)
T ss_dssp CSEEEESCEEEEEESC--EEES--CSSC--------------SEEEESCEEEEEESCEEEECSTTCCSBCCBSCEEEEEE
T ss_pred eEEEEEcccceEEEee--EEEe--CCCc--------------eEeeeccCCEEEEeEEEeeccCCCccccccCCcCEEEE
Confidence 4888999999999995 4431 1223 38999999999999999985 3568999999999999
Q ss_pred EEEEECCCC------CCCCceeeec-CccCEEEEecEE--ecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCC
Q 012788 215 NISVHAPPE------SPYTVGIVPD-SSDNVCIEDCII--AMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGS 285 (456)
Q Consensus 215 n~~i~~~~~------~~n~DGi~~~-~s~nV~I~n~~i--~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~ 285 (456)
|++|.+.++ ..+.||+++. .|+||+|+||++ ..++.||++.+.. ....+||+|+||++.+. .+
T Consensus 253 n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~-------~~~v~nV~v~n~~~~~t-~~ 324 (448)
T 3jur_A 253 KCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEM-------SGGVRNVVARNNVYMNV-ER 324 (448)
T ss_dssp SCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSC-------TTCEEEEEEESCEEESC-SE
T ss_pred eeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcc-------cCcEEEEEEEEEEEecc-cc
Confidence 999998542 1223333332 279999999999 4566799998852 23489999999999876 89
Q ss_pred eeEeccc--ccCcEEeEEEEeEEEECCcceE-EEEecC-----CCCceEEeEEEEceEecCcceeEEEeccCCCCCCCCC
Q 012788 286 SVAFGSE--MSGGISNVQVEKIHLYDSLNGI-EFRTTK-----GRGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDF 357 (456)
Q Consensus 286 gi~igs~--~~~~v~nI~v~n~~~~~~~~gi-~iks~~-----g~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~ 357 (456)
|++|++. ..+.++||+|+|++|.+...++ .|+... ...+.|+||+|+||+.++.+.++.|...
T Consensus 325 GirIKt~~g~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~~~~~~~~i~nI~~~NI~~t~~~~~i~i~g~--------- 395 (448)
T 3jur_A 325 ALRLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNEEGEYLPVVRSVFVKNLKATGGKYAVRIEGL--------- 395 (448)
T ss_dssp EEEEECCTTTCSEEEEEEEESCEEEEESSEEEEEESCGGGCCCSCCCEEEEEEEESCEEEECSEEEEEECB---------
T ss_pred eEEEEEEcCCCceEeeEEEEEEEEECCccccEEEEeeccCCCCCCCceEEEEEEEeEEEEecceEEEEEeC---------
Confidence 9999985 3467999999999999998888 887642 1346899999999999988889888643
Q ss_pred CCCCCCeEEEEEEEEEEeeccceeEEEEe----eCCCCeeeEEEEeEEEEeC
Q 012788 358 DPDALPAIDQITFKDIIGTNITIAGNFTG----IQEAPFANICLSNISLSIN 405 (456)
Q Consensus 358 ~~~~~~~i~nIt~~nI~~~~~~~~~~~~g----~~~~~~~~I~~~nv~i~~~ 405 (456)
++ ..++||+|+||+++....+..+.. .+...++|++|+||++.+.
T Consensus 396 -~~--~p~~~I~~~nv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~ing~ 444 (448)
T 3jur_A 396 -EN--DYVKDILISDTIIEGAKISVLLEFGQLGMENVIMNGSRFEKLYIEGK 444 (448)
T ss_dssp -TT--BCEEEEEEEEEEEESCSEEEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred -CC--CCEeeEEEEEEEEEccccceeEeccccccccceecccEEEEEEEcCE
Confidence 22 269999999999998776666643 3456799999999999764
|
| >1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-20 Score=186.20 Aligned_cols=211 Identities=17% Similarity=0.217 Sum_probs=165.6
Q ss_pred eEEEEeeccEEEEeE---EEEeCC--cc-------------eEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEE
Q 012788 179 LVEFISSENVVVSNL---TFLNAP--AY-------------NIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCI 240 (456)
Q Consensus 179 ~i~~~~~~nv~I~~v---~i~ns~--~~-------------~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I 240 (456)
++.+. .+||+|.|. +|.... .| .+.+..|+|++|+++++.+++ .++|++..|++|+|
T Consensus 66 li~~~-~~nv~I~G~~gG~IdG~G~~~w~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~nsp----~~~i~i~~~~nv~i 140 (339)
T 1ia5_A 66 LISVS-GSDLTITGASGHSINGDGSRWWDGEGGNGGKTKPKFFAAHSLTNSVISGLKIVNSP----VQVFSVAGSDYLTL 140 (339)
T ss_dssp SEEEE-EESCEEEECTTCEEECCGGGTCSSCTTTSSSCCCCCEEEEEEEEEEEESCEEECCS----SCCEEEESCEEEEE
T ss_pred EEEEE-cCcEEEEcCCCeEEeCCCCccccccccCCCCCCCeEEEEeecCcEEEEEEEEEcCC----cceEEEecccCeEE
Confidence 56665 499999997 665432 23 488899999999999999865 47899999999999
Q ss_pred EecEEecC---------CceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCc
Q 012788 241 EDCIIAMG---------HDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSL 311 (456)
Q Consensus 241 ~n~~i~~g---------DD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~ 311 (456)
+|++|.+. .|||.+.+ ++||+|+||++... +++|+|++. +||+|+||++.+.
T Consensus 141 ~~~~I~~~~~d~~~~~ntDGid~~~------------s~nV~I~n~~i~~g-DDcIaiksg-----~nI~i~n~~~~~g- 201 (339)
T 1ia5_A 141 KDITIDNSDGDDNGGHNTDAFDIGT------------STYVTISGATVYNQ-DDCVAVNSG-----ENIYFSGGYCSGG- 201 (339)
T ss_dssp ESCEEECGGGTTTTCCSCCSEEEES------------CEEEEEESCEEECS-SCSEEESSE-----EEEEEESCEEESS-
T ss_pred eeEEEECCccccccCCCCCcEEecC------------CceEEEEeeEEEcC-CCeEEEeCC-----eEEEEEeEEEECC-
Confidence 99999872 34455443 89999999999976 899999973 8999999999986
Q ss_pred ceEEEEecCC-CCceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccce-eEEEEee--
Q 012788 312 NGIEFRTTKG-RGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITI-AGNFTGI-- 387 (456)
Q Consensus 312 ~gi~iks~~g-~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~-~~~~~g~-- 387 (456)
+|+.|++... ..+.|+||+|+|++|.+..++++|+.+.+ +.+.++||+|+||++..... ++.+...
T Consensus 202 hGisiGS~g~~~~~~v~nV~v~n~~~~~t~~girIKt~~g----------~~G~v~nI~~~ni~~~~v~~~~i~i~~~y~ 271 (339)
T 1ia5_A 202 HGLSIGSVGGRSDNTVKNVTFVDSTIINSDNGVRIKTNID----------TTGSVSDVTYKDITLTSIAKYGIVVQQNYG 271 (339)
T ss_dssp SCEEEEEECSSSCCEEEEEEEEEEEEESCSEEEEEEEETT----------CCCEEEEEEEEEEEEEEESSEEEEEEEEET
T ss_pred ceEEECcCCcccCCCEEEEEEEeeEEECCCcEEEEEEeCC----------CCcEEEeeEEEEEEEECcccccEEEEccCC
Confidence 6899998532 35789999999999999999999997522 23589999999999998765 7766431
Q ss_pred -----C--CCCeeeEEEEeEEEEeCCCCC------Ccceeeeeeecccc
Q 012788 388 -----Q--EAPFANICLSNISLSINPGSY------NSWECSNIHGSSES 423 (456)
Q Consensus 388 -----~--~~~~~~I~~~nv~i~~~~~~~------~~~~c~~v~g~~~~ 423 (456)
+ ..+++||+|+||+.+...+.. ...-|+|+.-....
T Consensus 272 ~~~~~p~~~~~i~ni~~~ni~gt~~~~~~~v~i~c~~~~c~ni~~~nv~ 320 (339)
T 1ia5_A 272 DTSSTPTTGVPITDFVLDNVHGSVVSSGTNILISCGSGSCSDWTWTDVS 320 (339)
T ss_dssp CTTSCCCSSSCEEEEEEEEEEEEECTTSEEEEEECCTTCEEEEEEEEEE
T ss_pred CCCCCCcCCceEEEEEEEeEEEEeCCCCEEEEEEeCCCCEecEEEEeEE
Confidence 2 257999999999998875211 12346666654433
|
| >1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-20 Score=187.48 Aligned_cols=218 Identities=15% Similarity=0.224 Sum_probs=165.6
Q ss_pred eEEEEeeccEEEEe---EEEEeCC--cc------------eEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEE
Q 012788 179 LVEFISSENVVVSN---LTFLNAP--AY------------NIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIE 241 (456)
Q Consensus 179 ~i~~~~~~nv~I~~---v~i~ns~--~~------------~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~ 241 (456)
++.+ +.+||+|.| -+|.... .| .+.+..|+|++|+++++.+++ ..++++. |+||+|+
T Consensus 89 ~i~~-~~~nv~I~G~~~g~IdG~G~~~w~~~~~~~~~rP~~i~~~~~~nv~i~~iti~nsp----~~~i~i~-~~nv~i~ 162 (362)
T 1czf_A 89 LISM-SGEHITVTGASGHLINCDGARWWDGKGTSGKKKPKFFYAHGLDSSSITGLNIKNTP----LMAFSVQ-ANDITFT 162 (362)
T ss_dssp SEEE-EEESCEEEECTTCEEECCGGGTCCSCTTSSSCCCCCEEEEEEETEEEESCEEECCS----SCCEEEE-CSSEEEE
T ss_pred EEEE-eCccEEEEcCCCcEEECCCchhhcccCCCCCCCCeEEEEeecccEEEEEEEEecCC----ccEEEEe-eCCEEEE
Confidence 5666 569999999 5664332 23 488999999999999999975 3469999 9999999
Q ss_pred ecEEec-CCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcceEEEEecC
Q 012788 242 DCIIAM-GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTK 320 (456)
Q Consensus 242 n~~i~~-gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~iks~~ 320 (456)
|++|.+ .+|+ +.+...+|+... .++||+|+||++... +++|+|++. +||+|+||++.+. +|+.|++..
T Consensus 163 ~~~I~~~~~d~---~~~~NtDGidi~-~s~nV~I~n~~i~~g-DDcIaiksg-----~nI~i~n~~~~~g-hGisiGS~G 231 (362)
T 1czf_A 163 DVTINNADGDT---QGGHNTDAFDVG-NSVGVNIIKPWVHNQ-DDCLAVNSG-----ENIWFTGGTCIGG-HGLSIGSVG 231 (362)
T ss_dssp SCEEECGGGGT---TTCCSCCSEEEC-SCEEEEEESCEEECS-SCSEEESSE-----EEEEEESCEEESS-CCEEEEEEC
T ss_pred EEEEECCcccc---ccCCCCCceeec-CcceEEEEeeEEecC-CCEEEEeCC-----eEEEEEEEEEeCC-ceeEEeecc
Confidence 999997 3443 122333443322 389999999999987 899999973 9999999999985 699999962
Q ss_pred -CCCceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccc-eeEEEE---ee------C-
Q 012788 321 -GRGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT-IAGNFT---GI------Q- 388 (456)
Q Consensus 321 -g~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~-~~~~~~---g~------~- 388 (456)
...+.|+||+|+|++|.+..++++|+...+ +.+.++||+|+||++.... .++.+. +. +
T Consensus 232 ~~~~~~v~nV~v~n~~~~~t~~GirIKt~~g----------~~G~v~nI~~~ni~~~~v~~~~i~I~~~Y~~~~~~~~p~ 301 (362)
T 1czf_A 232 DRSNNVVKNVTIEHSTVSNSENAVRIKTISG----------ATGSVSEITYSNIVMSGISDYGVVIQQDYEDGKPTGKPT 301 (362)
T ss_dssp SSSCCEEEEEEEEEEEEEEEEEEEEEEEETT----------CCEEEEEEEEEEEEEEEEEEEEEEEEEEEETTEECSCCC
T ss_pred ccCCCCEEEEEEEeeEEECCceEEEEEEeCC----------CCceEeeEEEEeEEEECcccccEEEEEecCCCCCCCCCC
Confidence 245899999999999999999999997532 2358999999999999876 476663 21 1
Q ss_pred -CCCeeeEEEEeEEEEeCCCCC-C-----cceeeeeeecccc
Q 012788 389 -EAPFANICLSNISLSINPGSY-N-----SWECSNIHGSSES 423 (456)
Q Consensus 389 -~~~~~~I~~~nv~i~~~~~~~-~-----~~~c~~v~g~~~~ 423 (456)
..+++||+|+||+.+.+.+.. . ...|+|+.-....
T Consensus 302 ~~~~i~nI~~~ni~gt~~~~~~~i~i~c~~~~c~ni~~~nv~ 343 (362)
T 1czf_A 302 NGVTIQDVKLESVTGSVDSGATEIYLLCGSGSCSDWTWDDVK 343 (362)
T ss_dssp SSEEEEEEEEEEEEEEECTTSEEEEEECCTTTEEEEEEEEEE
T ss_pred CCceEEEEEEEEEEEEecCCceEEEEEeCCCcCcCEEEEeEE
Confidence 247999999999998875211 1 2346666654433
|
| >2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-20 Score=184.26 Aligned_cols=210 Identities=19% Similarity=0.244 Sum_probs=164.6
Q ss_pred eEEEEeeccEEEEeE---EEEeCC--cc-------------eEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEE
Q 012788 179 LVEFISSENVVVSNL---TFLNAP--AY-------------NIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCI 240 (456)
Q Consensus 179 ~i~~~~~~nv~I~~v---~i~ns~--~~-------------~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I 240 (456)
++.+.. +||+|.|. +|.... .| .+.+..|+|++|+++++.+++ ..++++..|++|+|
T Consensus 62 ~i~~~~-~nv~I~G~~gG~IdG~G~~~w~~~~~~~~~~rp~~i~~~~~~nv~i~giti~nsp----~~~i~i~~~~nv~i 136 (339)
T 2iq7_A 62 LISFSG-TNININGASGHSIDCQGSRWWDSKGSNGGKTKPKFFYAHSLKSSNIKGLNVLNTP----VQAFSINSATTLGV 136 (339)
T ss_dssp SEEEEE-ESCEEEECTTCEEECCGGGTCCSCGGGSSSCCCCCEEEEEEEEEEEECCEEECCS----SCCEEEESCEEEEE
T ss_pred EEEEEc-ccEEEEcCCCCEEECCcccccccccccCCCCCCeEEEEeeeCcEEEEEEEEEeCC----cceEEEeccCCEEE
Confidence 566654 99999997 664432 23 488899999999999999865 47899999999999
Q ss_pred EecEEecC---------CceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCc
Q 012788 241 EDCIIAMG---------HDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSL 311 (456)
Q Consensus 241 ~n~~i~~g---------DD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~ 311 (456)
+|++|.+. .|||.+.+ ++||+|+||++... +++|+|++. +||+|+||++.+.
T Consensus 137 ~~~~I~~~~~d~~~~~ntDGid~~~------------s~nV~I~n~~i~~g-DDciaiksg-----~nI~i~n~~~~~g- 197 (339)
T 2iq7_A 137 YDVIIDNSAGDSAGGHNTDAFDVGS------------STGVYISGANVKNQ-DDCLAINSG-----TNITFTGGTCSGG- 197 (339)
T ss_dssp ESCEEECGGGGGTTCCSCCSEEEES------------CEEEEEESCEEECS-SCSEEESSE-----EEEEEESCEEESS-
T ss_pred EEEEEECCccccccCCCCCcEEEcC------------cceEEEEecEEecC-CCEEEEcCC-----ccEEEEeEEEECC-
Confidence 99999873 34454443 89999999999976 899999973 8999999999986
Q ss_pred ceEEEEecCC-CCceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccce-eEEEE---e
Q 012788 312 NGIEFRTTKG-RGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITI-AGNFT---G 386 (456)
Q Consensus 312 ~gi~iks~~g-~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~-~~~~~---g 386 (456)
+|+.|++... ..+.|+||+|+|++|.+..++++|+.+.+ +.+.++||+|+||++..... ++.+. +
T Consensus 198 hGisiGSlg~~~~~~v~nV~v~n~~~~~~~~girIkt~~g----------~~G~v~nI~~~ni~~~~v~~~~i~i~~~y~ 267 (339)
T 2iq7_A 198 HGLSIGSVGGRSDNTVKTVTISNSKIVNSDNGVRIKTVSG----------ATGSVSGVTYSGITLSNIAKYGIVIEQDYE 267 (339)
T ss_dssp CCEEEEEESSSSCCEEEEEEEEEEEEESCSEEEEEEEETT----------CCCEEEEEEEEEEEEEEESSEEEEEEEEEE
T ss_pred ceEEECcCCcccCCCEEEEEEEeeEEECCCcEEEEEEeCC----------CCeEEEEEEEEeEEccCcccccEEEEeecC
Confidence 5899998532 35889999999999999999999997522 23589999999999998765 76653 2
Q ss_pred e------C--CCCeeeEEEEeEEEEeCCCCC------Ccceeeeeeeccc
Q 012788 387 I------Q--EAPFANICLSNISLSINPGSY------NSWECSNIHGSSE 422 (456)
Q Consensus 387 ~------~--~~~~~~I~~~nv~i~~~~~~~------~~~~c~~v~g~~~ 422 (456)
. + ..+++||+|+||+.+...+.. ...-|+|+.-...
T Consensus 268 ~~~~~~~p~~~~~i~ni~~~ni~gt~~~~~~~~~i~c~~~~c~ni~~~nv 317 (339)
T 2iq7_A 268 NGSPTGTPTNGVPITGLTLSKITGSVASSGTNVYILCASGACSNWKWSGV 317 (339)
T ss_dssp TTEECSCCCSSSCEEEEEEEEEEEEECTTSEEEEEECCTTCEEEEEEEEE
T ss_pred CCCCCCCCCCCceEEEEEEEeEEEEeCCCCEEEEEEeCCCcEecEEEEeE
Confidence 1 2 257999999999999876211 1234666665443
|
| >1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 | Back alignment and structure |
|---|
Probab=99.86 E-value=8.2e-20 Score=181.27 Aligned_cols=210 Identities=15% Similarity=0.215 Sum_probs=164.2
Q ss_pred eEEEEeeccEEEEeE---EEEeCC--cc-------------eEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEE
Q 012788 179 LVEFISSENVVVSNL---TFLNAP--AY-------------NIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCI 240 (456)
Q Consensus 179 ~i~~~~~~nv~I~~v---~i~ns~--~~-------------~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I 240 (456)
++.+ ..+||+|.|. +|.... .| .+.+..|+|++|+++++.+++ ..++++. |++|+|
T Consensus 62 li~~-~~~nv~I~G~~gG~IdG~G~~~w~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~nsp----~~~i~i~-~~nv~i 135 (336)
T 1nhc_A 62 LIRF-GGKDLTVTMADGAVIDGDGSRWWDSKGTNGGKTKPKFMYIHDVEDSTFKGINIKNTP----VQAISVQ-ATNVHL 135 (336)
T ss_dssp SEEC-CEESCEEEECTTCEEECCGGGTCCSCTTTSSSCCCCCEEEEEEEEEEEESCEEECCS----SCCEEEE-EEEEEE
T ss_pred EEEE-ecCCEEEEcCCCeEEECCccccccccCcCCCCCCceEEEEeeeCcEEEEEEEEEeCC----ccEEEEE-eCCEEE
Confidence 4555 4599999996 664432 23 488899999999999999865 3479999 999999
Q ss_pred EecEEecC---------CceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCc
Q 012788 241 EDCIIAMG---------HDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSL 311 (456)
Q Consensus 241 ~n~~i~~g---------DD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~ 311 (456)
+|++|.+. .|||.+.+ ++||+|+||++... +++|+|++. +||+|+||++.+.
T Consensus 136 ~~~~I~~~~~d~~~~~ntDGidi~~------------s~nV~I~n~~i~~g-DDciaiksg-----~nI~i~n~~~~~g- 196 (336)
T 1nhc_A 136 NDFTIDNSDGDDNGGHNTDGFDISE------------STGVYISGATVKNQ-DDCIAINSG-----ESISFTGGTCSGG- 196 (336)
T ss_dssp ESCEEECTTHHHHTCCSCCSEEECS------------CEEEEEESCEEESS-SEEEEESSE-----EEEEEESCEEESS-
T ss_pred EEEEEECCCcccccCCCCCcEEecC------------CCeEEEEeCEEEcC-CCEEEEeCC-----eEEEEEeEEEECC-
Confidence 99999873 45666655 89999999999987 899999973 9999999999986
Q ss_pred ceEEEEecCC-CCceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccce-eEEEE---e
Q 012788 312 NGIEFRTTKG-RGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITI-AGNFT---G 386 (456)
Q Consensus 312 ~gi~iks~~g-~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~-~~~~~---g 386 (456)
+|+.|++... ..+.|+||+|+|++|.+..++++|+...+ +.+.++||+|+||++..... |+.+. +
T Consensus 197 hGisiGS~g~~~~~~v~nV~v~n~~~~~t~~girIkt~~g----------~~G~v~nI~~~ni~~~~v~~~~i~i~~~y~ 266 (336)
T 1nhc_A 197 HGLSIGSVGGRDDNTVKNVTISDSTVSNSANGVRIKTIYK----------ETGDVSEITYSNIQLSGITDYGIVIEQDYE 266 (336)
T ss_dssp SEEEEEEESSSSCCEEEEEEEEEEEEESCSEEEEEEEETT----------CCCEEEEEEEEEEEEEEESSEEEEEEEEEE
T ss_pred cCceEccCccccCCCEEEEEEEeeEEECCCcEEEEEEECC----------CCCEEeeeEEeeEEeeccccccEEEEeecC
Confidence 6899999632 35789999999999999999999997422 23589999999999999765 76652 2
Q ss_pred e------C--CCCeeeEEEEeEEEEeCCCC-C-----Ccceeeeeeecccc
Q 012788 387 I------Q--EAPFANICLSNISLSINPGS-Y-----NSWECSNIHGSSES 423 (456)
Q Consensus 387 ~------~--~~~~~~I~~~nv~i~~~~~~-~-----~~~~c~~v~g~~~~ 423 (456)
. + ..+++||+|+||+.+.+.+. . ...-|+|+.-....
T Consensus 267 ~~~~~~~p~~~~~i~~i~~~ni~gt~~~~~~~v~i~c~~~~c~ni~~~nv~ 317 (336)
T 1nhc_A 267 NGSPTGTPSTGIPITDVTVDGVTGTLEDDATQVYILCGDGSCSDWTWSGVD 317 (336)
T ss_dssp TTEECSCCCSSSCEEEEEEEEEEEEECTTCEEEEEECCTTCEEEEEEEEEE
T ss_pred CCCCCCCCCCCceEEEEEEEeEEEEeCCCCEEEEEEcCCCcEecEEEEeEE
Confidence 1 2 25799999999999887621 1 12346666654433
|
| >2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-20 Score=198.46 Aligned_cols=249 Identities=14% Similarity=0.141 Sum_probs=194.9
Q ss_pred eeEEEeeeeeEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEEe--C-CcceEEeecccceEE
Q 012788 137 SLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLN--A-PAYNIHPVYCSNVHI 213 (456)
Q Consensus 137 ~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~n--s-~~~~i~~~~~~nv~i 213 (456)
.+|.+.+++|+.|.|- +|.-. ..| .+++.+|+|++|+++++.+ + ...++++..|++|+|
T Consensus 332 ~~i~~~~~~nv~I~gi--ti~ns--~~~--------------~i~~~~~~nv~i~~v~i~~~~~~NtDGidi~~s~nV~I 393 (608)
T 2uvf_A 332 SLMTLRGVENVYLAGF--TVRNP--AFH--------------GIMNLENHNVVANGLIHQTYDANNGDGIEFGNSQNVMV 393 (608)
T ss_dssp CSEEEESEEEEEEESC--EEECC--SSC--------------SEEEESCEEEEEESCEEECTTCTTCCSEEEESCEEEEE
T ss_pred eEEEEEeeeeEEEeCc--EEecC--CCC--------------EEEEecCCCEEEeeEEEcCCCCCCCCeEEecCCceEEE
Confidence 4788899999999994 44321 122 4899999999999999865 2 246899999999999
Q ss_pred EEEEEECCCC------CCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCee
Q 012788 214 QNISVHAPPE------SPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSV 287 (456)
Q Consensus 214 ~n~~i~~~~~------~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi 287 (456)
+|++|.+.++ +.+.||++...|+||+|+||++..+++++++.++ .....+||+|+||++.+. .+|+
T Consensus 394 ~n~~i~~gDD~Iaiksg~~~~g~~~~~s~nI~I~n~~~~~ghg~~~iGS~-------~~~~v~nI~v~n~~~~~t-~~Gi 465 (608)
T 2uvf_A 394 FNNFFDTGDDCINFAAGTGEKAQEQEPMKGAWLFNNYFRMGHGAIVTGSH-------TGAWIEDILAENNVMYLT-DIGL 465 (608)
T ss_dssp ESCEEECSSCSEEEECCCSGGGGGSCCEEEEEEESCEECSSSCSEEEESC-------CTTCEEEEEEESCEEESC-SEEE
T ss_pred EeeEEecCCceEEecCCcCccccccccccCEEEEeEEEeCCCCeEEEccc-------CCCCEEEEEEEeEEEECC-CceE
Confidence 9999998654 3456777766799999999999999998888774 223489999999999987 8899
Q ss_pred Eeccc--ccCcEEeEEEEeEEEECC-cceEEEEecCC------------CCceEEeEEEEceEecCcc---eeEEEeccC
Q 012788 288 AFGSE--MSGGISNVQVEKIHLYDS-LNGIEFRTTKG------------RGGYIRQIVISDAELYNIN---VAFGACGNC 349 (456)
Q Consensus 288 ~igs~--~~~~v~nI~v~n~~~~~~-~~gi~iks~~g------------~~g~v~nI~~~ni~~~~~~---~~i~i~~~y 349 (456)
+|++. ..+.++||+|+|++|.+. ..+|.|+.... ..+.+++|+|+||++++.. .++.|...
T Consensus 466 rIKt~~g~gG~v~nI~~~ni~m~~v~~~~i~I~~~y~~~~~~~~~~~~~~~~~~~~V~i~nI~~~n~~gt~~~i~i~g~- 544 (608)
T 2uvf_A 466 RAKSTSTIGGGARNVTFRNNAMRDLAKQVMVMTLDYADSNANIDYPPAKIPAQFYDFTLKNVTVDNSTGKNPSIEIKGD- 544 (608)
T ss_dssp EEEEETTTCCEEEEEEEEEEEEEEESSEEEEEEEECCCCSCCCSSCCCSSCCEEEEEEEEEEEEEEECSSSCSEEEECB-
T ss_pred EEeeecCCCceEECcEEEeeEEEccccccEEEEeccCCCCcccccCCcCCCCccccEEEEeEEEEeeeceEEeEEEEEE-
Confidence 99975 235699999999999998 58999986532 2367999999999999876 46666642
Q ss_pred CCCCCCCCCCCCCCeEEEEEEEEEEeeccceeEEEEeeCCCCeeeEEEEeEEEEeCCCCCCcceeeeeeeccc-cccCCC
Q 012788 350 GSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGSSE-SVFPEP 428 (456)
Q Consensus 350 ~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~~~g~~~~~~~~I~~~nv~i~~~~~~~~~~~c~~v~g~~~-~~~p~~ 428 (456)
+ +....++||+|+||+++... +..+. .|++++|+||++....+ ...|.|+++++... ++.|.|
T Consensus 545 ~---------~~~~p~~ni~~~nv~i~~~~-~~~i~-----~~~~~~~~nv~i~~~~~-~~~~~~~~v~~~~~~~v~~~p 608 (608)
T 2uvf_A 545 T---------ANKAWHRLVHVNNVQLNNVT-PTAIS-----DLRDSEFNKVTFTELRG-DTPWHFSEVKNVKVDGKPVAP 608 (608)
T ss_dssp G---------GGTBCEEEEEEEEEEEESCC-CCEEE-----SEESCEEEEEEEESCSS-SCSCCEESCBSCCBTTCCC--
T ss_pred c---------CCCCccccEEEEeEEEEccC-ceeEE-----eccCceEEeEEEeCCCC-CccEEEEeeeceEEcceEeCC
Confidence 2 11136999999999999764 44444 57899999999986543 24699999999876 677754
|
| >1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=9.2e-19 Score=178.62 Aligned_cols=174 Identities=16% Similarity=0.212 Sum_probs=144.7
Q ss_pred eEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEec
Q 012788 202 NIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQS 281 (456)
Q Consensus 202 ~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~ 281 (456)
.+++..|+|++|++++|.+++ ..+|++..|+||+|+|++|.++|. .+.+|+.... +||+|+||++..
T Consensus 129 ~i~~~~~~nv~I~~iti~nsp----~~~i~i~~~~nv~I~n~~I~~~d~-------~ntDGidi~~--~nV~I~n~~i~~ 195 (422)
T 1rmg_A 129 ILRLTDVTHFSVHDIILVDAP----AFHFTMDTCSDGEVYNMAIRGGNE-------GGLDGIDVWG--SNIWVHDVEVTN 195 (422)
T ss_dssp EEEEEEEEEEEEEEEEEECCS----SCSEEEEEEEEEEEEEEEEECCSS-------TTCCSEEEEE--EEEEEEEEEEES
T ss_pred EEEEcccceEEEECeEEECCC----ceEEEEeCcCCEEEEeEEEECCCC-------CCCccEeecC--CeEEEEeeEEeC
Confidence 588899999999999999864 468999999999999999998431 1234444443 999999999998
Q ss_pred CCCCeeEecccccCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCC
Q 012788 282 SSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDA 361 (456)
Q Consensus 282 ~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~ 361 (456)
. ++||+|++ +.+||+|+||++.+. +|++|++. ++.+.|+||+|+|++|.+..++|+|+.. . ..
T Consensus 196 g-DD~Iai~s----~~~nI~I~n~~~~~~-~GisIGS~-g~~~~v~nV~v~n~~~~~~~~Gi~Ikt~-~---------g~ 258 (422)
T 1rmg_A 196 K-DECVTVKS----PANNILVESIYCNWS-GGCAMGSL-GADTDVTDIVYRNVYTWSSNQMYMIKSN-G---------GS 258 (422)
T ss_dssp S-SEEEEEEE----EEEEEEEEEEEEESS-SEEEEEEE-CTTEEEEEEEEEEEEEESSSCSEEEEEB-B---------CC
T ss_pred C-CCeEEeCC----CCcCEEEEeEEEcCC-cceeeccc-CCCCcEEEEEEEeEEEeccceEEEEEec-C---------CC
Confidence 7 89999996 689999999998876 69999996 3457899999999999999999999862 2 12
Q ss_pred CCeEEEEEEEEEEeeccceeEEEEee---------CCCCeeeEEEEeEEEEeCC
Q 012788 362 LPAIDQITFKDIIGTNITIAGNFTGI---------QEAPFANICLSNISLSINP 406 (456)
Q Consensus 362 ~~~i~nIt~~nI~~~~~~~~~~~~g~---------~~~~~~~I~~~nv~i~~~~ 406 (456)
+.++||+|+||++.....++.+... ...+++||+|+||+.+...
T Consensus 259 -G~v~nI~~~NI~~~~v~~~i~i~~~y~~~~~~~~~~~~i~nI~~~nI~gt~~~ 311 (422)
T 1rmg_A 259 -GTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVAGDGVQLNNITVKNWKGTEAN 311 (422)
T ss_dssp -EEEEEEEEEEEEEEEESCSEEEETBCTTSCCBSSSCCEEEEEEEEEEEEEESC
T ss_pred -cEEEEEEEEeEEEECccccEEEEeeccCCCcccCCCceEEEEEEEeEEEEecc
Confidence 5899999999999998878777532 2357999999999998854
|
| >1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=7.7e-19 Score=174.94 Aligned_cols=224 Identities=15% Similarity=0.196 Sum_probs=164.1
Q ss_pred eeEEEEeeccEEEEe---EEEEeCCc--c--------------eEEe-e-cccceEEEEEEEECCCCCCCCceeeecCcc
Q 012788 178 HLVEFISSENVVVSN---LTFLNAPA--Y--------------NIHP-V-YCSNVHIQNISVHAPPESPYTVGIVPDSSD 236 (456)
Q Consensus 178 ~~i~~~~~~nv~I~~---v~i~ns~~--~--------------~i~~-~-~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~ 236 (456)
.+|.+ ..+||+|.| -+|..... | .+.+ . .|++++|+++++.+++ ..++++..|+
T Consensus 62 ~~i~~-~~~ni~I~G~~~G~IdG~G~~ww~~~~~~~~~~~rP~~i~~~~~~~~nv~I~giti~nsp----~~~i~i~~~~ 136 (349)
T 1hg8_A 62 NPIVI-SGSNITITGASGHVIDGNGQAYWDGKGSNSNSNQKPDHFIVVQKTTGNSKITNLNIQNWP----VHCFDITGSS 136 (349)
T ss_dssp CSEEE-EEESCEEEECTTCEEECCGGGTCCSCTTCTTSCCCCSEEEEEEEEESSEEEESCEEECCS----SEEEEEESCE
T ss_pred ceEEE-ECccEEEEecCCCEEcCCcchhhhcccccCCCCCCCeEEEEeecCcCcEEEEEEEEEcCC----CceEEEeccC
Confidence 35666 459999999 67754321 1 4667 6 7889999999999865 4789999999
Q ss_pred CEEEEecEEecC-CceEec-----CCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECC
Q 012788 237 NVCIEDCIIAMG-HDAISL-----KSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDS 310 (456)
Q Consensus 237 nV~I~n~~i~~g-DD~iai-----~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~ 310 (456)
+|+|+|++|.+. +|.... +.+...+|+.. ..++||+|+||++... +++|+|++. +||+|+||++.+.
T Consensus 137 nv~i~~~~I~~~~~~~~~~~~~~~~~~~NtDGid~-~~s~nV~I~n~~i~~g-DDcIaiksg-----~nI~i~n~~~~~g 209 (349)
T 1hg8_A 137 QLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDI-SSSDHVTLDNNHVYNQ-DDCVAVTSG-----TNIVVSNMYCSGG 209 (349)
T ss_dssp EEEEEEEEEECGGGSSCCTTTTTSCSCCSCCSEEE-ESCEEEEEEEEEEECS-SCSEEESSE-----EEEEEEEEEEESS
T ss_pred CEEEEEEEEECCCCccccccccccccCCCCCeEEE-ccccEEEEEeeEEecC-CCeEEeeCC-----eEEEEEeEEEeCC
Confidence 999999999862 221100 01122233321 1389999999999976 899999973 8999999999875
Q ss_pred cceEEEEecC-CCCceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccc-eeEEEEe--
Q 012788 311 LNGIEFRTTK-GRGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT-IAGNFTG-- 386 (456)
Q Consensus 311 ~~gi~iks~~-g~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~-~~~~~~g-- 386 (456)
+|+.|++.. ...+.|+||+|+|++|.+..++++|+...+ +.+.++||+|+||++.... .++.+..
T Consensus 210 -hGisiGS~G~~~~~~v~nV~v~n~~~~~~~~GirIKt~~g----------~~G~v~nI~~~ni~~~~v~~~~i~i~~~Y 278 (349)
T 1hg8_A 210 -HGLSIGSVGGKSDNVVDGVQFLSSQVVNSQNGCRIKSNSG----------ATGTINNVTYQNIALTNISTYGVDVQQDY 278 (349)
T ss_dssp -CCEEEEEESSSSCCEEEEEEEEEEEEEEEEEEEEEEEETT----------CCEEEEEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred -cceEEccccccccCCEEEEEEEEEEEECCCcEEEEEecCC----------CCccccceEEEEEEEEccccccEEEEeec
Confidence 699999862 235889999999999999999999997422 2358999999999999976 4766532
Q ss_pred -e------CC--CCeeeEEEEeEEEEeCCCCC-C-----cceeeeeeeccccc
Q 012788 387 -I------QE--APFANICLSNISLSINPGSY-N-----SWECSNIHGSSESV 424 (456)
Q Consensus 387 -~------~~--~~~~~I~~~nv~i~~~~~~~-~-----~~~c~~v~g~~~~~ 424 (456)
. +. .+++||+|+||+.+...+.. . ..-|+|+.-....+
T Consensus 279 ~~~~~~~~p~~~~~i~~I~~~ni~gt~~~~~~~v~i~c~~~~c~ni~~~nv~i 331 (349)
T 1hg8_A 279 LNGGPTGKPTNGVKISNIKFIKVTGTVASSAQDWFILCGDGSCSGFTFSGNAI 331 (349)
T ss_dssp CSSSBCSCCCSSEEEEEEEEEEEEEEECTTSEEEEEECCSSCEEEEEEESCEE
T ss_pred cCCCCCCcccCCceEEEEEEEeEEEEeCCCCEEEEEEeCCCcCcCEEEEeEEE
Confidence 1 11 36999999999998866211 1 23466666554443
|
| >1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=5.4e-19 Score=178.25 Aligned_cols=198 Identities=12% Similarity=0.158 Sum_probs=162.3
Q ss_pred CeeEEEEeeccEEEEeE-EEEeCC----------cc-----------------eEEeecccceEEEEEEEECCCCCCCCc
Q 012788 177 PHLVEFISSENVVVSNL-TFLNAP----------AY-----------------NIHPVYCSNVHIQNISVHAPPESPYTV 228 (456)
Q Consensus 177 p~~i~~~~~~nv~I~~v-~i~ns~----------~~-----------------~i~~~~~~nv~i~n~~i~~~~~~~n~D 228 (456)
..+|.+.+.+|++|.|- +|.... .| .+.+.+|+|++|+++++.+++ ..
T Consensus 100 ~~~I~~~~~~ni~I~G~G~IdG~G~~~~~~~~~~ww~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~nsp----~~ 175 (376)
T 1bhe_A 100 DAFITAVSTTNSGIYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSP----NF 175 (376)
T ss_dssp CCSEEEESCBSCEEECSSEEECCTTSCCSSSSSCTTHHHHHHHHHTCEECCCCSEEEESCEEEEEEEEEEECCS----SC
T ss_pred ccEEEEECCEeEEEEeCEEEECCCCcccCCCccccccccccccccCccCCCCeEEEEEcceEEEEEeEEEECCC----cE
Confidence 35788999999999996 554432 11 477899999999999999965 34
Q ss_pred eeeecCccCEEEEecEEec-----CCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccc-cCcEEeEEE
Q 012788 229 GIVPDSSDNVCIEDCIIAM-----GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEM-SGGISNVQV 302 (456)
Q Consensus 229 Gi~~~~s~nV~I~n~~i~~-----gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~-~~~v~nI~v 302 (456)
++++..|++|+|+|++|.+ ..|||.+.+ |+||+|+||++... +++|+|++.. ....+||+|
T Consensus 176 ~i~~~~~~~v~i~~v~I~~~~~~~NtDGid~~~------------s~nV~I~n~~i~~g-DDcIaiks~~~~~~s~nI~I 242 (376)
T 1bhe_A 176 HVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMS------------SKNITIAYSNIATG-DDNVAIKAYKGRAETRNISI 242 (376)
T ss_dssp SEEEESCEEEEEEEEEEECCTTCSSCCSEEEES------------CEEEEEESCEEECS-SCSEEEEECTTSCCEEEEEE
T ss_pred EEEEeCCCcEEEEeEEEECCCCCCCCceEeecC------------CceEEEEeCEEecC-CCeEEEcccCCCCCceEEEE
Confidence 6889999999999999987 357777765 89999999999987 8999999742 247999999
Q ss_pred EeEEEECCcceEEEEecCCCCceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccceeE
Q 012788 303 EKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAG 382 (456)
Q Consensus 303 ~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~ 382 (456)
+||++.. .+|+.|.+... .|+||+|+|+++.+..++++|+.+.+ +.+.++||+|+||++.+...|+
T Consensus 243 ~n~~~~~-ghGisiGSe~~---~v~nV~v~n~~~~~t~~GirIKt~~g----------~~G~v~ni~f~ni~~~~v~~~i 308 (376)
T 1bhe_A 243 LHNDFGT-GHGMSIGSETM---GVYNVTVDDLKMNGTTNGLRIKSDKS----------AAGVVNGVRYSNVVMKNVAKPI 308 (376)
T ss_dssp EEEEECS-SSCEEEEEEES---SEEEEEEEEEEEESCSEEEEEECCTT----------TCCEEEEEEEEEEEEESCSEEE
T ss_pred EeeEEEc-cccEEeccCCc---cEeeEEEEeeEEeCCCcEEEEEEecC----------CCceEeeEEEEeEEEeCCCceE
Confidence 9999986 57999998642 79999999999999999999996422 2368999999999999998888
Q ss_pred EEEe---eC----CCCeeeEEEEeEEEEeC
Q 012788 383 NFTG---IQ----EAPFANICLSNISLSIN 405 (456)
Q Consensus 383 ~~~g---~~----~~~~~~I~~~nv~i~~~ 405 (456)
.+.- .. ...++||+|+||+.+..
T Consensus 309 ~i~~~y~~~~~~~~~~i~ni~~~ni~gt~~ 338 (376)
T 1bhe_A 309 VIDTVYEKKEGSNVPDWSDITFKDVTSETK 338 (376)
T ss_dssp EEETTSSCCCCCCCCEEEEEEEEEEEECSC
T ss_pred EEEeeccCCCCCcCcEEEEEEEEEEEEEec
Confidence 7742 11 23589999999998754
|
| >1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=179.00 Aligned_cols=197 Identities=13% Similarity=0.192 Sum_probs=155.9
Q ss_pred eEEEEeeccEEEEe--EEEEeCC--cc-------------eEEeecccceEEEEEEEECCCCCCCCceeeecCccC-EEE
Q 012788 179 LVEFISSENVVVSN--LTFLNAP--AY-------------NIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDN-VCI 240 (456)
Q Consensus 179 ~i~~~~~~nv~I~~--v~i~ns~--~~-------------~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~n-V~I 240 (456)
++.+. .+|++|.| -+|.... .| .+.+..|+ ++|+++++.+++ ..++++..|+| |+|
T Consensus 60 ~i~~~-~~ni~I~G~~G~idG~G~~ww~~~~~~~~~~rP~~i~~~~~~-v~i~giti~nsp----~~~i~i~~~~n~v~i 133 (335)
T 1k5c_A 60 LFTID-GTGINFVGADHIFDGNGALYWDGKGTNNGTHKPHPFLKIKGS-GTYKKFEVLNSP----AQAISVGPTDAHLTL 133 (335)
T ss_dssp SEEEE-EEEEEEECTTCEEECCGGGTCCSCTTTSSSCCCCCSEEEEEE-EEEESCEEESCS----SCCEEEEEEEEEEEE
T ss_pred EEEEE-ccCEEEEeCccEEcCChhHhhhcccccCCCCCCeEEEEeceE-EEEEEEEEECCC----cceEEEEccCCeEEE
Confidence 56665 69999999 3553221 12 36778999 999999999975 35699999999 999
Q ss_pred EecEEecC-CceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcceEEEEec
Q 012788 241 EDCIIAMG-HDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTT 319 (456)
Q Consensus 241 ~n~~i~~g-DD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~iks~ 319 (456)
+|++|.+. +|+.. .....+|+.. .++||+|+||++... +++|+|++. +||+|+||++.+. +|+.|++.
T Consensus 134 ~~v~I~~~~~d~~~--~~~NtDGidi--~s~nV~I~n~~i~~g-DDcIaiksg-----~nI~i~n~~~~~g-hGisIGS~ 202 (335)
T 1k5c_A 134 DGITVDDFAGDTKN--LGHNTDGFDV--SANNVTIQNCIVKNQ-DDCIAINDG-----NNIRFENNQCSGG-HGISIGSI 202 (335)
T ss_dssp ESCEEECGGGGGGG--CCCSCCSEEE--ECSSEEEESCEEESS-SCSEEEEEE-----EEEEEESCEEESS-CCEEEEEE
T ss_pred EEEEEECCCCcccc--cCCCCCeEcc--cCCeEEEEeeEEEcC-CCEEEeeCC-----eeEEEEEEEEECC-ccCeEeec
Confidence 99999984 44311 0234455555 599999999999987 999999973 9999999999986 68999997
Q ss_pred CCCCceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCC-CeEEEEEEEEEEeeccc-eeEEEEe-------eC--
Q 012788 320 KGRGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDAL-PAIDQITFKDIIGTNIT-IAGNFTG-------IQ-- 388 (456)
Q Consensus 320 ~g~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~-~~i~nIt~~nI~~~~~~-~~~~~~g-------~~-- 388 (456)
. ..+.|+||+|+|++|.+..++++|+...+ +. +.++||+|+||+++... .|+.+.. .+
T Consensus 203 g-~~~~v~nV~v~n~~~~~t~~girIKt~~g----------~~~G~v~nI~f~ni~~~~v~~~~i~i~~~Y~~~~~~p~~ 271 (335)
T 1k5c_A 203 A-TGKHVSNVVIKGNTVTRSMYGVRIKAQRT----------ATSASVSGVTYDANTISGIAKYGVLISQSYPDDVGNPGT 271 (335)
T ss_dssp C-TTCEEEEEEEESCEEEEEEEEEEEEEETT----------CCSCEEEEEEEESCEEEEEEEEEEEEEEEETSSSSSCCS
T ss_pred c-CCCCEEEEEEEeeEEECCCceEEEEEeCC----------CCcceEeeeEEEEEEEEccccccEEEEeeCCCCCCCCCC
Confidence 3 26899999999999999999999997533 22 58999999999999986 4776642 12
Q ss_pred CCCeeeEEEEeEEEE
Q 012788 389 EAPFANICLSNISLS 403 (456)
Q Consensus 389 ~~~~~~I~~~nv~i~ 403 (456)
..+++||+|+||++.
T Consensus 272 ~~~i~nI~~~nI~~~ 286 (335)
T 1k5c_A 272 GAPFSDVNFTGGATT 286 (335)
T ss_dssp SSCEEEEEECSSCEE
T ss_pred CceEEEEEEEEEEEe
Confidence 358999999999944
|
| >1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-16 Score=164.26 Aligned_cols=281 Identities=15% Similarity=0.132 Sum_probs=179.0
Q ss_pred CCCcE-EEecCCceeeeeeEeccce-EEEeccCcEEEecCCCCCCCcCCCCCCCCcc-cccCC-CcceeeEEEeeeeeEE
Q 012788 73 KGGAQ-LYVPSGKWLTGSFNLTSHL-TLFLEKGAVILGSQNPSHWDVVDPLPSYGRG-IELPG-RRYKSLINGYMLRDVV 148 (456)
Q Consensus 73 ~gg~~-v~iP~G~Yl~g~l~L~s~~-tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g-~~~~~-~~~~~~i~~~~~~ni~ 148 (456)
+++.+ |++++|.|+.+++.+.+++ .|.+...++|.+... .|.... ...|... ...+. -....++...+++|+.
T Consensus 220 ~s~~~~L~l~~GA~L~gs~~~~~~~~nv~ItG~GtIDG~G~--~ww~~~-~~~~~~~~~~rp~~i~~~~~~~~~~c~nV~ 296 (549)
T 1x0c_A 220 SSSVTWVYFAPGAYVKGAVEFLSTASEVKASGHGVLSGEQY--VWYADP-DEGYQKASGANNNGLRMWRGTLGNSSQTFV 296 (549)
T ss_dssp CTTCCEEEECTTEEEESCEEECCCSSEEEEESSCEEECTTS--CTTEEG-GGTTEECGGGCSCCCCSEEEECCSSCEEEE
T ss_pred cCCCCeEecCCCCEEEEEEEEecCceeEEEEeeEEEECCCc--eecccC-cccccccccCCCceEEEeeccccCCceEEE
Confidence 45666 9999999999999888633 455555688887653 221000 0000000 00000 0111223337899999
Q ss_pred EeccCceeeCCCcccccccccCCCCCCCCeeEEEE-ee-cc--EEEEeEEEEeCC---cceEEeecccceEEEEEEEECC
Q 012788 149 VTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFI-SS-EN--VVVSNLTFLNAP---AYNIHPVYCSNVHIQNISVHAP 221 (456)
Q Consensus 149 I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~-~~-~n--v~I~~v~i~ns~---~~~i~~~~~~nv~i~n~~i~~~ 221 (456)
|+|. ...+. .+|. +++. .| +| ++|+++++.++. ..++++. +||+|+|++|.+.
T Consensus 297 I~Gi-ti~Ns---p~w~--------------i~i~~~~~~ni~V~I~n~~i~~~~~~NTDGidi~--~nV~I~n~~i~~g 356 (549)
T 1x0c_A 297 LNGV-TVSAP---PFNS--------------MDWSGNSLDLITCRVDDYKQVGAFYGQTDGLEMY--PGTILQDVFYHTD 356 (549)
T ss_dssp EESC-EEECC---SSCS--------------EEEECSCGGGEEEEEEEEEEECCCBTTCCCCBCC--TTCEEEEEEEEES
T ss_pred EECc-EEECC---Ccee--------------EEeeccCCCCCeEEEEeeEeEcCCCCCCCccccc--CCEEEEeeEEeCC
Confidence 9995 33322 3343 5644 45 69 999999998754 3467777 9999999999985
Q ss_pred CCCCCCceeeecCccCEEEEecEEecCCc-e-EecCCCCCccccccCCCcccEEEEEEEEecCCC-----CeeEecc---
Q 012788 222 PESPYTVGIVPDSSDNVCIEDCIIAMGHD-A-ISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSG-----SSVAFGS--- 291 (456)
Q Consensus 222 ~~~~n~DGi~~~~s~nV~I~n~~i~~gDD-~-iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~-----~gi~igs--- 291 (456)
.|+|.+.+ +||+|+||++..+.. + |++++. ....+||+|+||++.+... .|..|++
T Consensus 357 -----DDcIaIks-~NI~I~n~~~~~~~g~~~IsiGs~--------~~~V~NV~v~n~~i~~s~~~k~~~~g~iI~~~~~ 422 (549)
T 1x0c_A 357 -----DDGLKMYY-SNVTARNIVMWKESVAPVVEFGWT--------PRNTENVLFDNVDVIHQAYANAGNNPGIFGAVNN 422 (549)
T ss_dssp -----SCCEECCS-SSEEEEEEEEEECSSSCSEECCBS--------CCCEEEEEEEEEEEEECCCCSGGGCCCSEEECCB
T ss_pred -----CCEEEECC-CCEEEEeeEEEcCCCCceEEECCC--------CCcEEEEEEEeeEEECccccccccceEEEecccc
Confidence 57899876 999999999987543 4 787762 2358999999999987521 0322543
Q ss_pred ---c-------ccCcEEeEEEEeEEEECCc-ceEEEEecCC-CCceEEeEEEEceEecCcc-----e-eEEEeccCCCCC
Q 012788 292 ---E-------MSGGISNVQVEKIHLYDSL-NGIEFRTTKG-RGGYIRQIVISDAELYNIN-----V-AFGACGNCGSHP 353 (456)
Q Consensus 292 ---~-------~~~~v~nI~v~n~~~~~~~-~gi~iks~~g-~~g~v~nI~~~ni~~~~~~-----~-~i~i~~~y~~~~ 353 (456)
. ..+.++||+|+|++|.+.. .|+.+....+ .++.|+||+|+||++++.+ . +..+.+ |..-
T Consensus 423 ~~~g~~~~~~d~~G~i~nI~f~NI~i~nv~~~g~~~~~~~g~pg~~I~nI~i~NI~i~~~~~~~~~~~~~~i~G-~~~~- 500 (549)
T 1x0c_A 423 YLYAPDGLSSNHSTGNSNMTVRNITWSNFRAEGSSSALFRINPIQNLDNISIKNVSIESFEPLSINTTESWMPV-WYDL- 500 (549)
T ss_dssp TTTCTTSCCSCCCCBEEEEEEEEEEEEEEEEEEEECCSEEECCSEEEEEEEEEEEEEEEECCGGGTCSCEEECC-CBBT-
T ss_pred cccCccccCcCCCceEccEEEEeEEEEeEEEeceEEeeecCCCCCcCccEEEEEEEEEccccccccccceEEeC-CCcc-
Confidence 2 2467999999999988775 4544321111 2456999999999998765 2 233332 2110
Q ss_pred CCCCCCCCCCeEEEEEEEEEEeeccc-------eeEEEEeeCCCCeeeEE
Q 012788 354 DDDFDPDALPAIDQITFKDIIGTNIT-------IAGNFTGIQEAPFANIC 396 (456)
Q Consensus 354 ~~~~~~~~~~~i~nIt~~nI~~~~~~-------~~~~~~g~~~~~~~~I~ 396 (456)
.+ ... ..++||+|+||++++.. .++.|.|.++.+-..++
T Consensus 501 ~~---~~~-~~v~nI~f~NV~i~G~~i~~~n~~~~g~~~~~~~~~~~~~~ 546 (549)
T 1x0c_A 501 NN---GKQ-ITVTDFSIEGFTVGNTTITASNAASVGRIDGVDPAYAGSVH 546 (549)
T ss_dssp TT---CCB-CCEEEEEEEEEEETTEECCTTTTTTTTCEEEECTTTGGGEE
T ss_pred cc---ccc-eeeeeEEEEeEEEeCeEeecccccccceecccCCCCcccee
Confidence 00 011 26999999999887542 35567777666544443
|
| >1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.4e-16 Score=161.37 Aligned_cols=252 Identities=12% Similarity=0.063 Sum_probs=170.7
Q ss_pred CCCcE-EEecCCceeeeeeEeccceEEEeccCcEEEecCCCCCCCcCCCCCCCCcccccC-CCcceeeEEEeeeeeEEEe
Q 012788 73 KGGAQ-LYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELP-GRRYKSLINGYMLRDVVVT 150 (456)
Q Consensus 73 ~gg~~-v~iP~G~Yl~g~l~L~s~~tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~i~~~~~~ni~I~ 150 (456)
+.+-+ |++++|.++.+.+.+.+...|.+...++|.+... .-|.. . ...|......+ .-+...++...+++||.|+
T Consensus 262 kSnvt~L~L~~GA~l~g~i~~~~~~nv~ItG~GtIDG~G~-~ww~~-~-~~~~~~~~~rp~~i~~~~~~~~~~c~NV~I~ 338 (574)
T 1ogo_X 262 NSNTYWVYLAPGAYVKGAIEYFTKQNFYATGHGILSGENY-VYQAN-A-GDNYIAVKSDSTSLRMWWHNNLGGGQTWYCV 338 (574)
T ss_dssp CTTCCEEEECTTEEEESCEEECCSSCEEEESSCEEECTTS-CTTCB-T-TTTTBSCCCTTTBCCSEEECSCCSSEEEEEE
T ss_pred cCCCceEEecCCcEEEccEEEeCceeEEEEeCEEEeCCCc-ccccc-c-ccccccccCCcceEEEEeccccCCceeEEEE
Confidence 34456 9999999999999999877777777799877642 12211 0 00010000000 0011112223389999999
Q ss_pred ccCceeeCCCcccccccccCCCCCCCCeeEEEEeeccE--EEEeEEEEeCCc---ceEEeecccceEEEEEEEECCCCCC
Q 012788 151 GDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENV--VVSNLTFLNAPA---YNIHPVYCSNVHIQNISVHAPPESP 225 (456)
Q Consensus 151 G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv--~I~~v~i~ns~~---~~i~~~~~~nv~i~n~~i~~~~~~~ 225 (456)
|. ...+. ..| .+++.+|+|| +|+++++.+++. .++++. +||+|+||+|.+.
T Consensus 339 Gi-ti~NS---p~w--------------~i~~~~c~nV~~~I~nv~i~~~~~~nTDGIDi~--~NV~I~nc~I~~g---- 394 (574)
T 1ogo_X 339 GP-TINAP---PFN--------------TMDFNGNSGISSQISDYKQVGAFFFQTDGPEIY--PNSVVHDVFWHVN---- 394 (574)
T ss_dssp SC-EEECC---SSC--------------SEEECSSSCEEEEEEEEEEECCCSTTCCCCBCC--TTCEEEEEEEEES----
T ss_pred Ce-EEECC---CCc--------------EEeecCCCChhhEEEeeEeeCCCCCCCccCccc--CCEEEEeeEEECC----
Confidence 96 44442 233 2788899999 999999987644 478887 9999999999985
Q ss_pred CCceeeecCccCEEEEecEEecCCc-e-EecCCCCCccccccCCCcccEEEEEEEEecCCC-------CeeEeccc----
Q 012788 226 YTVGIVPDSSDNVCIEDCIIAMGHD-A-ISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSG-------SSVAFGSE---- 292 (456)
Q Consensus 226 n~DGi~~~~s~nV~I~n~~i~~gDD-~-iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~-------~gi~igs~---- 292 (456)
.|.|.+.+ +||+|+||++..+.. + |++++. ....+||+|+||++.+... .+..+|++
T Consensus 395 -DDcIaIks-~NI~I~nc~i~~g~g~g~IsIGS~--------~g~V~NV~v~N~~i~~~~~~~~~~~~~g~iiGs~~~y~ 464 (574)
T 1ogo_X 395 -DDAIKIYY-SGASVSRATIWKCHNDPIIQMGWT--------SRDISGVTIDTLNVIHTRYIKSETVVPSAIIGASPFYA 464 (574)
T ss_dssp -SCSEECCS-TTCEEEEEEEEECSSSCSEECCSS--------CCCEEEEEEEEEEEEECCCSSCCTTTTCEEEEECCCSS
T ss_pred -CCEEEECC-ccEEEEeEEEECCCCCceEEEcCC--------CCcEEEEEEEeEEEECCcccceeccccceeeccccccc
Confidence 58898865 999999999998654 4 888762 2359999999999976411 12333322
Q ss_pred ------ccCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecC------cce-eEEEeccCCCCCCCCCCC
Q 012788 293 ------MSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYN------INV-AFGACGNCGSHPDDDFDP 359 (456)
Q Consensus 293 ------~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~------~~~-~i~i~~~y~~~~~~~~~~ 359 (456)
...++ ||+|+|++|.+...++ |...+ .+.|+||+|+||++.+ ... +..+.+. +
T Consensus 465 ~~~~~~~g~gV-NI~f~NI~~~~v~~~i-i~i~p--~~~I~nI~~~NI~i~g~~~~~~~~~~~~~i~G~----------~ 530 (574)
T 1ogo_X 465 SGMSPDSRKSI-SMTVSNVVCEGLCPSL-FRITP--LQNYKNFVVKNVAFPDGLQTNSIGTGESIIPAA----------S 530 (574)
T ss_dssp SSCCCEEEEEE-EEEEEEEEECSSBCEE-EEECC--SEEEEEEEEEEEEETTCBCCSTTCTTCEEECCC----------T
T ss_pred cccccCCCceE-EEEEEeEEEEceeEee-EEECC--CCCEEEEEEEeEEEeCccccccccccceeEecC----------C
Confidence 11228 9999999999988875 55443 5689999999999986 111 1112111 1
Q ss_pred CCCCeEEEEEEEEEEeecc
Q 012788 360 DALPAIDQITFKDIIGTNI 378 (456)
Q Consensus 360 ~~~~~i~nIt~~nI~~~~~ 378 (456)
..++||+|+||++.+.
T Consensus 531 ---~~v~nI~~~NV~i~g~ 546 (574)
T 1ogo_X 531 ---GLTMGLAISAWTIGGQ 546 (574)
T ss_dssp ---TCCEEEEEEEEEETTE
T ss_pred ---CccceEEEEeEEEeCE
Confidence 2589999999999764
|
| >2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-14 Score=141.07 Aligned_cols=250 Identities=14% Similarity=0.136 Sum_probs=167.8
Q ss_pred CCCceEEEeec----CccCCCCCchHHHHHHHHHHhhcc----ccCCCcEEEecCCceee-eeeEeccc-eEEEeccCcE
Q 012788 36 PRPHSVSITEF----GAVGDGKTLNTLAFQNAIFYLKSF----ADKGGAQLYVPSGKWLT-GSFNLTSH-LTLFLEKGAV 105 (456)
Q Consensus 36 ~~~~~~~v~df----GA~gDG~tddT~Aiq~Ai~~a~~~----~~~gg~~v~iP~G~Yl~-g~l~L~s~-~tL~l~~ga~ 105 (456)
+-...+||++| +|+||+.+|++++|+++|+++.+. .+++|.+|+||+|+|.+ +++.+..+ ++|..+.+++
T Consensus 10 ~~~~~~~vt~~~~~~~~~~~~~~d~~~~i~~~ia~~~~~~~~~~A~pGdvI~L~~G~Y~l~g~ivIdkp~LtL~G~~~g~ 89 (410)
T 2inu_A 10 NSPNTYDVTTWRIKAHPEVTAQSDIGAVINDIIADIKQRQTSPDARPGAAIIIPPGDYDLHTQVVVDVSYLTIAGFGHGF 89 (410)
T ss_dssp --CCEEETTTCCBTTBTTCCHHHHHHHHHHHHHHHHHHHCCCTTSCCCEEEECCSEEEEECSCEEECCTTEEEECSCCCC
T ss_pred ccCceEEEEEecccCCCcCCCchhHHHHHHHHHHHhhcccccccCCCCCEEEECCCeeccCCcEEEecCcEEEEecCCCc
Confidence 44578999999 899999999999999999998420 13689999999999975 89999888 9999876444
Q ss_pred ----EEecCCCCCCCcCCCCCCCCcccccCC-CcceeeEEEee-----eeeEEEeccCceeeCCCcccccccccCCCCCC
Q 012788 106 ----ILGSQNPSHWDVVDPLPSYGRGIELPG-RRYKSLINGYM-----LRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYS 175 (456)
Q Consensus 106 ----i~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~i~~~~-----~~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~ 175 (456)
|.+......|....+- |....+.. ..-.+.|.... +++|+|.+ -+|+|-.-.-|.. ....
T Consensus 90 ~s~~Id~~~~~~g~~~~~g~---Gs~I~V~a~~~~g~a~~V~~~g~~r~s~V~~~~--v~I~G~~~~~~G~-----s~~~ 159 (410)
T 2inu_A 90 FSRSILDNSNPTGWQNLQPG---ASHIRVLTSPSAPQAFLVKRAGDPRLSGIVFRD--FCLDGVGFTPGKN-----SYHN 159 (410)
T ss_dssp CCHHHHHTSCCTTCSCCSCC---SEEEEECCCTTSCEEEEECCCSSSCEECCEEES--CEEECCCCSSSTT-----SCCC
T ss_pred ceeEEecccccCcccccCCC---CcEEEEeccccccceeEEeeccCcccCCcEECC--EEEECCEeecCCC-----Cccc
Confidence 5433222343321110 00000000 00011222221 35566666 3555541111110 0112
Q ss_pred CCeeEEEEe-eccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecC-ccCEEEEecEEecCCce--
Q 012788 176 RPHLVEFIS-SENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDS-SDNVCIEDCIIAMGHDA-- 251 (456)
Q Consensus 176 rp~~i~~~~-~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~-s~nV~I~n~~i~~gDD~-- 251 (456)
....|.+.. .++++|++..|.+. .+++.+..+++++|++..|.. ...||+++. ++...|+++.+..++||
T Consensus 160 ~dAGI~v~~~~d~~~I~nn~i~~~-~fGI~l~~a~~~~I~~N~I~e-----~GNgI~L~G~~~~~~I~~N~i~~~~dG~g 233 (410)
T 2inu_A 160 GKTGIEVASDNDSFHITGMGFVYL-EHALIVRGADALRVNDNMIAE-----CGNCVELTGAGQATIVSGNHMGAGPDGVT 233 (410)
T ss_dssp SCEEEEECSCEESCEEESCEEESC-SEEEEETTEESCEEESCEEES-----SSEEEEECSCEESCEEESCEEECCTTSEE
T ss_pred CceeEEEeccCCeEEEECCEEecc-cEEEEEccCCCcEEECCEEEe-----cCCceeeccccccceEecceeeecCCCCE
Confidence 345677765 88999999999987 579999999999999999985 357899887 88889999999998888
Q ss_pred EecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcceEEEEe
Q 012788 252 ISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRT 318 (456)
Q Consensus 252 iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~iks 318 (456)
|.+.. +.+.+|+++.+......||.+- ...+-.|+++.+.+...|+.+--
T Consensus 234 Iyl~n------------s~~~~I~~N~i~~~~R~gIh~m-----~s~~~~i~~N~f~~~~~Gi~~M~ 283 (410)
T 2inu_A 234 LLAEN------------HEGLLVTGNNLFPRGRSLIEFT-----GCNRCSVTSNRLQGFYPGMLRLL 283 (410)
T ss_dssp EEEES------------EESCEEESCEECSCSSEEEEEE-----SCBSCEEESCEEEESSSCSEEEE
T ss_pred EEEEe------------CCCCEEECCCcccCcceEEEEE-----ccCCCEEECCEEecceeEEEEEE
Confidence 65554 7888888887733225677764 34566778888887777776654
|
| >1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4.9e-14 Score=144.33 Aligned_cols=158 Identities=13% Similarity=-0.012 Sum_probs=122.0
Q ss_pred EeeccEEEEeE----EEEeCC-----cceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEe
Q 012788 183 ISSENVVVSNL----TFLNAP-----AYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAIS 253 (456)
Q Consensus 183 ~~~~nv~I~~v----~i~ns~-----~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~ia 253 (456)
.+.+|++|.|- ++.... ...+.+.+|+|++|+++++.+.+ .+..+.+|.+. +.||+.
T Consensus 106 ~~~~nItI~G~Gg~~~iDG~G~~~~rp~~i~~~~~~Nv~I~gIti~n~w--------~ih~s~~V~i~------NtDGi~ 171 (464)
T 1h80_A 106 NIVRNFSFQGLGNGFLVDFKDSRDKNLAVFKLGDVRNYKISNFTIDDNK--------TIFASILVDVT------ERNGRL 171 (464)
T ss_dssp SCEEEEEEEECTTCEEEECTTCSCCBEEEEEECSEEEEEEEEEEEECCS--------CBSCSEEECEE------EETTEE
T ss_pred cCccceEEECcCcceEEeCCCCCCCCceEEEEEeeccEEEeeeEEeccc--------eEeeceeeeee------cCCCce
Confidence 56788888876 333211 12467899999999999999732 12334444333 356666
Q ss_pred cCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcceEEEEec-----CCCCceEEe
Q 012788 254 LKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTT-----KGRGGYIRQ 328 (456)
Q Consensus 254 i~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~iks~-----~g~~g~v~n 328 (456)
+ . ++||+|+||++..+ +.|+ |+.....++||+|+||+|.+ .+|++|+++ .+.+|.++|
T Consensus 172 i-~------------s~nV~I~n~~I~~g-ddgi--Gs~~~~~~~NV~V~n~~~~g-g~GIrIktg~d~IG~~~~g~v~N 234 (464)
T 1h80_A 172 H-W------------SRNGIIERIKQNNA-LFGY--GLIQTYGADNILFRNLHSEG-GIALRMETDNLLMKNYKQGGIRN 234 (464)
T ss_dssp E-E------------EEEEEEEEEEEESC-CTTC--EEEEESEEEEEEEEEEEEES-SEEEEEECCCHHHHHHTCCEEEE
T ss_pred e-e------------ccCEEEeceEEecC-CCeE--EecccCCEeEEEEEeeEEEC-CCEEEEEeCCceeccCCCCcEEE
Confidence 5 2 89999999999987 6676 44555789999999999999 899999998 556789999
Q ss_pred EEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccceeEEE
Q 012788 329 IVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNF 384 (456)
Q Consensus 329 I~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~~ 384 (456)
|+|+|++|+++..+|.|+.. . ..++||+|+||++++...++.+
T Consensus 235 I~~~Ni~~~nv~~~I~I~p~------------~-~~isnItfeNI~~t~~~~aI~i 277 (464)
T 1h80_A 235 IFADNIRCSKGLAAVMFGPH------------F-MKNGDVQVTNVSSVSCGSAVRS 277 (464)
T ss_dssp EEEEEEEEESSSEEEEEECT------------T-CBCCCEEEEEEEEESSSCSEEE
T ss_pred EEEEeEEEECCceeEEEeCC------------C-ceEeEEEEEEEEEEccceeEEE
Confidence 99999999999999999831 1 3689999999999997777766
|
| >3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.5e-11 Score=126.39 Aligned_cols=183 Identities=19% Similarity=0.184 Sum_probs=128.8
Q ss_pred EEEeeccEEEEeEEEEeCC--------------cceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEe
Q 012788 181 EFISSENVVVSNLTFLNAP--------------AYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIA 246 (456)
Q Consensus 181 ~~~~~~nv~I~~v~i~ns~--------------~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~ 246 (456)
.+.+.+||+|+|.+|.... ...+.+..|+|++|+++++.+++ .+|+.+.+..+ |
T Consensus 101 ~a~~~~NItItG~TIDGNG~~~g~~~~~~g~~RP~lI~f~~c~NV~I~gVti~NSp----~~gI~I~~~~~----N---- 168 (609)
T 3gq8_A 101 VTTGNENIFLSSFTLDGNNKRLGQGISGIGGSRESNLSIRACHNVYIRDIEAVDCT----LHGIDITCGGL----D---- 168 (609)
T ss_dssp TTTCCEEEEEEEEEEECCGGGGCSSCCCSSTTTTCSEEEESCEEEEEEEEEEESCS----SCSEEEECSSS----S----
T ss_pred eecccccEEEEeeEEECCccccCcccccCCCCCccEEEEEeeceEEEEeeEEEeCC----CCCeEEeCCCC----C----
Confidence 4567899999999775411 12477888999999999998864 25666544432 1
Q ss_pred cCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECC-----cceEEEEecCC
Q 012788 247 MGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDS-----LNGIEFRTTKG 321 (456)
Q Consensus 247 ~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~-----~~gi~iks~~g 321 (456)
|++.+. +..+..+++||+|+||++....++||+|++ .+||+|+||++.+. .+|+.|.+
T Consensus 169 ---DGid~D------Gi~fd~~S~NV~I~Nc~I~~tGDDcIaIks-----seNI~I~Nc~~~gp~G~S~~~GIsIGs--- 231 (609)
T 3gq8_A 169 ---YPYLGD------GTTAPNPSENIWIENCEATGFGDDGITTHH-----SQYINILNCYSHDPRLTANCNGFEIDD--- 231 (609)
T ss_dssp ---CCCCCT------TCCCSSCCEEEEEESCEEESCSSCSEEECS-----CEEEEEESCEEECCSSCSSCCSEEECT---
T ss_pred ---ccccCC------CccccccceeEEEEeeEEEecCCCEEEecC-----CeeEEEEeEEEECCCCCCCcccEEccC---
Confidence 444332 323344699999999999654489999974 79999999999765 47888863
Q ss_pred CCceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEE-EEeeccc-eeEEEEee------CCCCee
Q 012788 322 RGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKD-IIGTNIT-IAGNFTGI------QEAPFA 393 (456)
Q Consensus 322 ~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~n-I~~~~~~-~~~~~~g~------~~~~~~ 393 (456)
+ .+||+|+|+++.+...+++|+.. . ..+.++||.|.| +...+.. ..+...|. ...+..
T Consensus 232 --g-s~NVtV~Nc~i~nt~~GIrIKt~-~----------~~~~v~NV~I~n~vs~~nvrsyn~r~iG~~~a~dp~s~~a~ 297 (609)
T 3gq8_A 232 --G-SRHVVLSNNRSKGCYGGIEIKAH-G----------DAPAAYNISINGHMSVEDVRSYNFRHIGHHAATAPQSVSAK 297 (609)
T ss_dssp --T-CEEEEEESEEEESSSEEEEEEEC-T----------TSCCCEEEEEEEEEEESCSEEEEEEETTSCSTTSCCCSSCE
T ss_pred --C-cccEEEEeeEEECCCCEEEEEec-C----------CCCccccEEEECCEeecCceEecceEEccccCCCCCcceec
Confidence 1 29999999999999999999964 1 124688898887 4544322 22333333 234678
Q ss_pred eEEEEeEEEEeCC
Q 012788 394 NICLSNISLSINP 406 (456)
Q Consensus 394 ~I~~~nv~i~~~~ 406 (456)
||+|.|+......
T Consensus 298 nV~l~n~~~~~p~ 310 (609)
T 3gq8_A 298 NIVASNLVSIRPN 310 (609)
T ss_dssp EEEEEEEEEESCC
T ss_pred ceEeecceEEeec
Confidence 8999988876544
|
| >2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.9e-11 Score=118.51 Aligned_cols=113 Identities=14% Similarity=0.087 Sum_probs=91.9
Q ss_pred eeEEEEeeccEEEEeEEEEeCCcceEEeec-ccceEEEEEEEECCCCCCCCceeee--------cCccCEEEEecEEec-
Q 012788 178 HLVEFISSENVVVSNLTFLNAPAYNIHPVY-CSNVHIQNISVHAPPESPYTVGIVP--------DSSDNVCIEDCIIAM- 247 (456)
Q Consensus 178 ~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~-~~nv~i~n~~i~~~~~~~n~DGi~~--------~~s~nV~I~n~~i~~- 247 (456)
..|.+..+++.+|++.++.+....++++.. +++++|++..+.. +.+|+.+ ..+++++|+++.+..
T Consensus 173 dGI~~~~s~~~~i~~N~~~~~~~~GI~~~~~s~~v~I~nN~i~~-----~~~g~~~~~~g~~~~~~s~nv~i~~N~~~~n 247 (377)
T 2pyg_A 173 DGFVADYLVDSVFENNVAYANDRHGFNVVTSTHDFVMTNNVAYG-----NGSSGLVVQRGLEDLALPSNILIDGGAYYDN 247 (377)
T ss_dssp CSEEEESEEEEEEESCEEESCSSCSEEEETTCEEEEEESCEEES-----CSSCSEEEECCSSCCCCCEEEEEESCEEESC
T ss_pred CceeEeccCCcEEECcEEEccccCcEEEEeccCCeEEECCEEEC-----ccCceEEEeccccCCCCCccEEEECCEEEcC
Confidence 457777888888888877777788899877 9999999999987 4567777 678899999998875
Q ss_pred CCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcc
Q 012788 248 GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLN 312 (456)
Q Consensus 248 gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~ 312 (456)
...++.++. +++++|+|+++.+....||.+. ++++++|+|++|.+...
T Consensus 248 ~~~Gi~~~~------------~~~v~i~~N~i~~~~~~GI~i~-----g~~~~~i~~N~i~~n~~ 295 (377)
T 2pyg_A 248 AREGVLLKM------------TSDITLQNADIHGNGSSGVRVY-----GAQDVQILDNQIHDNAQ 295 (377)
T ss_dssp SSCSEEEEE------------EEEEEEESCEEESCSSCSEEEE-----EEEEEEEESCEEESCCS
T ss_pred ccCceEecc------------ccCeEEECCEEECCCCceEEEe-----cCCCcEEECcEEECCcc
Confidence 455677655 7999999999987657899987 48899999999987643
|
| >2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=4.5e-12 Score=131.32 Aligned_cols=182 Identities=12% Similarity=0.057 Sum_probs=128.0
Q ss_pred eeEEEEeeccEEEEeEEEEeCCc--c------e-----EEeecccceEEEEEEEECC-CCCCCCceeee---cCccCEEE
Q 012788 178 HLVEFISSENVVVSNLTFLNAPA--Y------N-----IHPVYCSNVHIQNISVHAP-PESPYTVGIVP---DSSDNVCI 240 (456)
Q Consensus 178 ~~i~~~~~~nv~I~~v~i~ns~~--~------~-----i~~~~~~nv~i~n~~i~~~-~~~~n~DGi~~---~~s~nV~I 240 (456)
.+|.+.+++|++|.|--..+... | . +.+.+|+ |+++++.++ + ...+++ ..|+||+|
T Consensus 142 slI~~~~~~NItItG~GtIDGqG~~wW~~~~~~~~RP~l~f~~c~---I~GITi~NSDP----~w~I~iG~~~~c~NVtI 214 (600)
T 2x6w_A 142 DPASSGNLENCHIYGHGVVDFGGYEFGASSQLRNGVAFGRSYNCS---VTGITFQNGDV----TWAITLGWNGYGSNCYV 214 (600)
T ss_dssp SGGGCCCEEEEEEESSCEEECTTCCCSSTTCCEEEEECCSEEEEE---EESCEEESCCC----SCSEEECBTTBEEEEEE
T ss_pred ceEEEecceeEEEecceeeeCCccccccccccCCCCCEEEEeeeE---EeCeEEECCCC----ccEEEeCCCCCcccEEE
Confidence 34677889999999844444321 1 1 3456666 999999986 4 235888 89999999
Q ss_pred EecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEe-cccccCcEEeEEEEeEEEECCcceEEEEec
Q 012788 241 EDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAF-GSEMSGGISNVQVEKIHLYDSLNGIEFRTT 319 (456)
Q Consensus 241 ~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~i-gs~~~~~v~nI~v~n~~~~~~~~gi~iks~ 319 (456)
+|++|.+ ++.+..+.+|+ |+|+||++... +++|+| ++... .++.++ ++.....|+.|.+.
T Consensus 215 ~nvtfi~-----aI~sspNTDGI--------V~I~nc~I~tG-DDCIAI~KSGs~---~ni~~e--~~~~GHgGISIGSe 275 (600)
T 2x6w_A 215 RKCRFIN-----LVNSSVNADHS--------TVYVNCPYSGV-ESCYFSMSSSFA---RNIACS--VQLHQHDTFYRGST 275 (600)
T ss_dssp ESCEEEC-----CCCCSSCCCEE--------EEEECSSSEEE-ESCEEECCCTTH---HHHEEE--EEECSSSEEEESCE
T ss_pred eCeEEcc-----eEecCCCCCEE--------EEEEeeEEecC-CcEEEEecCCCc---CCeEEE--EEcCCCCcEEeccc
Confidence 9999322 11112334453 99999999987 999999 98642 234555 55566679999885
Q ss_pred CCCCceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccceeEEEEe----eCCCCeeeE
Q 012788 320 KGRGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTG----IQEAPFANI 395 (456)
Q Consensus 320 ~g~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~~~g----~~~~~~~~I 395 (456)
. .|.|+||+++| +++. .. .+.+.++||+|+||++.+...++.+.- .+..+++||
T Consensus 276 ~--~ggV~NV~V~N-rIKt---------~~----------G~GG~V~NItfeNI~m~nV~~~I~i~q~~~~~s~~~IsnI 333 (600)
T 2x6w_A 276 V--NGYCRGAYVVM-HAAE---------AA----------GAGSYAYNMQVENNIAVIYGQFVILGSDVTATVSGHLNDV 333 (600)
T ss_dssp E--EEESEEEEEEE-CGGG---------CT----------TTCSEEEEEEEESCEEEESSEEEEEEECBCSSCBCEEEEE
T ss_pred c--cCcEEEEEEEE-EEEe---------ec----------CCCceEEEEEEEEEEEEccceEEEeCCCCCCCCCceEEEE
Confidence 3 57899999999 3322 11 122689999999999999876655522 234579999
Q ss_pred EEEeEEEEeCCC
Q 012788 396 CLSNISLSINPG 407 (456)
Q Consensus 396 ~~~nv~i~~~~~ 407 (456)
+|+||+.+....
T Consensus 334 tfkNItgTsas~ 345 (600)
T 2x6w_A 334 IVSGNIVSIGER 345 (600)
T ss_dssp EEESCEEEECSC
T ss_pred EEEeEEEEeccc
Confidence 999999987543
|
| >3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.1e-11 Score=127.71 Aligned_cols=70 Identities=24% Similarity=0.375 Sum_probs=62.0
Q ss_pred CCCceEEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCCceeee-eeEeccceEEEeccCcEEEecC
Q 012788 36 PRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTG-SFNLTSHLTLFLEKGAVILGSQ 110 (456)
Q Consensus 36 ~~~~~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g-~l~L~s~~tL~l~~ga~i~~~~ 110 (456)
+....++|+||||+|||+||||+|||+||+++ .++.+||||+|+|++. +|.++++++|..+.-.+|.+..
T Consensus 396 ~~~~~vnVkd~GA~GDG~tDDT~Ai~~al~aa-----~~g~~v~~P~G~Y~vt~Ti~ip~~~~ivG~~~~~I~~~G 466 (758)
T 3eqn_A 396 APSDFVSVRSQGAKGDGHTDDTQAIKNVFAKY-----AGCKIIFFDAGTYIVTDTIQIPAGTQIVGEVWSVIMGTG 466 (758)
T ss_dssp CGGGEEETTTTTCCCEEEEECHHHHHHHHHHH-----TTTSEEECCSEEEEESSCEEECTTCEEECCSSEEEEECS
T ss_pred cccceEEeeeccccCCCCchhHHHHHHHHHHh-----cCCCEEEECCCEeEECCeEEcCCCCEEEecccceEecCC
Confidence 44679999999999999999999999999965 5789999999999986 8999999999988777887754
|
| >1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 | Back alignment and structure |
|---|
Probab=99.24 E-value=9.3e-10 Score=111.05 Aligned_cols=251 Identities=12% Similarity=0.159 Sum_probs=158.6
Q ss_pred CCCCCceEEEeecCc-cCCCCCchHH-HHHHHHHHhhccccCCCcEEEecCCcee-------eeeeEec-c-----ceEE
Q 012788 34 LDPRPHSVSITEFGA-VGDGKTLNTL-AFQNAIFYLKSFADKGGAQLYVPSGKWL-------TGSFNLT-S-----HLTL 98 (456)
Q Consensus 34 ~~~~~~~~~v~dfGA-~gDG~tddT~-Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl-------~g~l~L~-s-----~~tL 98 (456)
..+.+..+-|..-|- .++|.+.+++ .||+|++.| .+|.+|+|.+|+|. ...|.+. + .++|
T Consensus 10 ~~~~~~~~yVsp~Gsd~~~G~t~~~P~tiq~Ai~~a-----~pGdtI~l~~GtY~~~~~e~~~~~i~~~~sGt~~~pIti 84 (400)
T 1ru4_A 10 GISTKRIYYVAPNGNSSNNGSSFNAPMSFSAAMAAV-----NPGELILLKPGTYTIPYTQGKGNTITFNKSGKDGAPIYV 84 (400)
T ss_dssp TCCCSCEEEECTTCCTTCCSSSTTSCBCHHHHHHHC-----CTTCEEEECSEEEECCCBTTBCCCEEECCCCBTTBCEEE
T ss_pred cccCccEEEEcCCCCCCCCCccccCCccHHHHHhhC-----CCCCEEEECCCeEccccccccceeEEecCCCCCCCCEEE
Confidence 345556677765552 2344222222 699999986 57899999999998 2456654 3 3777
Q ss_pred Eecc--CcEEEecCCCC-CCCcCCCCCCCCcccccCCCcceeeEEEeeeeeEEEeccCceeeCCCcccccccccCCCCCC
Q 012788 99 FLEK--GAVILGSQNPS-HWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYS 175 (456)
Q Consensus 99 ~l~~--ga~i~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~ 175 (456)
.-.+ .++|. ..... .+.. . .. -|.. ..++++|+| -+|...+.
T Consensus 85 ~~~~g~~~vI~-~~~~~g~~~~----~--~~-----------~i~i-~~~~~~i~g--l~I~n~g~-------------- 129 (400)
T 1ru4_A 85 AAANCGRAVFD-FSFPDSQWVQ----A--SY-----------GFYV-TGDYWYFKG--VEVTRAGY-------------- 129 (400)
T ss_dssp EEGGGCCEEEE-CCCCTTCCCT----T--CC-----------SEEE-CSSCEEEES--EEEESCSS--------------
T ss_pred EEecCCCCEEe-CCccCCcccc----c--ee-----------EEEE-ECCeEEEEe--EEEEeCCC--------------
Confidence 6654 34444 22100 0100 0 00 1121 345556665 34432221
Q ss_pred CCeeEEEEeeccEEEEeEEEEeCCcceEEeeccc-ceEEEEEEEECCCC----CCCCceeeecCc--cCEEEEecEEec-
Q 012788 176 RPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCS-NVHIQNISVHAPPE----SPYTVGIVPDSS--DNVCIEDCIIAM- 247 (456)
Q Consensus 176 rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~-nv~i~n~~i~~~~~----~~n~DGi~~~~s--~nV~I~n~~i~~- 247 (456)
..|.+.. .+.+|+++++.+....+|.+.... +.+|.++++....+ ..+.|||.+..+ .+.+|++|++..
T Consensus 130 --~GI~v~g-s~~~i~n~~i~~n~~~GI~l~~~~s~n~I~nn~i~~N~d~~~~g~~~dG~~~~~~~g~Gn~~~~~~~~~N 206 (400)
T 1ru4_A 130 --QGAYVIG-SHNTFENTAFHHNRNTGLEINNGGSYNTVINSDAYRNYDPKKNGSMADGFGPKQKQGPGNRFVGCRAWEN 206 (400)
T ss_dssp --CSEEECS-SSCEEESCEEESCSSCSEEECTTCCSCEEESCEEECCCCTTTTTSSCCSEEECTTCCSCCEEESCEEESC
T ss_pred --CcEEEeC-CCcEEEeEEEECCCceeEEEEcccCCeEEEceEEEcccCccccCcccceEEEEecccCCeEEECCEEeec
Confidence 0355554 788899999999877788887654 88899999987643 246799988643 778899999876
Q ss_pred CCceEecCCCCCccccccCCCcccEEEEEEEEecC------------CCCeeEecccccCcEEeEEEEeEEEECC-cceE
Q 012788 248 GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSS------------SGSSVAFGSEMSGGISNVQVEKIHLYDS-LNGI 314 (456)
Q Consensus 248 gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~------------~~~gi~igs~~~~~v~nI~v~n~~~~~~-~~gi 314 (456)
.||++.+.. +...++|+||..+.. .+.|+.++++. ...+.+|+||...+. ..|+
T Consensus 207 ~ddGidl~~-----------~~~~v~i~nn~a~~Ng~~~~~~n~~~gngnGf~lgg~~--~~~~~~v~nn~a~~N~~~G~ 273 (400)
T 1ru4_A 207 SDDGFDLFD-----------SPQKVVIENSWAFRNGINYWNDSAFAGNGNGFKLGGNQ--AVGNHRITRSVAFGNVSKGF 273 (400)
T ss_dssp SSCSEECTT-----------CCSCCEEESCEEESTTCCCSCCTTCCCCCCSEECCCTT--CCCCCEEESCEEESCSSEEE
T ss_pred CCCcEEEEe-----------cCCCEEEEeEEEECCccccccccccccCCCCEEEeccC--CcCCEEEEeeEEECCcCcCE
Confidence 788988864 256789999988643 14577776552 456788999998865 4577
Q ss_pred EEEecCCCCceEEeEEEEceEecCcceeEEEe
Q 012788 315 EFRTTKGRGGYIRQIVISDAELYNINVAFGAC 346 (456)
Q Consensus 315 ~iks~~g~~g~v~nI~~~ni~~~~~~~~i~i~ 346 (456)
.....+ .+++++|.++.+....+.+.
T Consensus 274 ~~n~~~------~~~~i~nNt~~~N~~~~~~~ 299 (400)
T 1ru4_A 274 DQNNNA------GGVTVINNTSYKNGINYGFG 299 (400)
T ss_dssp ECTTCS------SCCEEESCEEESSSEEEEEC
T ss_pred eecCCC------CCEEEECeEEECCccceEEe
Confidence 664332 23677777777666676664
|
| >1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=9.9e-10 Score=113.56 Aligned_cols=212 Identities=9% Similarity=0.043 Sum_probs=125.2
Q ss_pred hHHHHHHHHHHhhccccCCCcEEEecCCceeeeeeEe------ccceEEEecc--CcEEEecCCCCCCCcCCCCCCCCcc
Q 012788 56 NTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNL------TSHLTLFLEK--GAVILGSQNPSHWDVVDPLPSYGRG 127 (456)
Q Consensus 56 dT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~l~L------~s~~tL~l~~--ga~i~~~~~~~~~~~~~~~~~~~~g 127 (456)
+.+.||+||+.| .+|.+|+|++|+|.-+.|.+ ..+++|..+. .++|.+.
T Consensus 30 ~~~~Lq~Ai~~A-----~pGDtI~L~~GtY~~~~i~i~~sGt~~~pItl~~~~~~~~vi~G~------------------ 86 (506)
T 1dbg_A 30 SNETLYQVVKEV-----KPGGLVQIADGTYKDVQLIVSNSGKSGLPITIKALNPGKVFFTGD------------------ 86 (506)
T ss_dssp SHHHHHHHHHHC-----CTTCEEEECSEEEETCEEEECCCCBTTBCEEEEESSTTSEEEEES------------------
T ss_pred CHHHHHHHHHhC-----CCCCEEEECCCEEecceEEEecCCcCCCCEEEECCCCCccEEeCC------------------
Confidence 356799999976 67899999999997556776 3466776542 2333321
Q ss_pred cccCCCcceeeEEEeeeeeEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEEeCCcc-eEEe-
Q 012788 128 IELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAY-NIHP- 205 (456)
Q Consensus 128 ~~~~~~~~~~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~-~i~~- 205 (456)
..+.. ..++++|+| -+|.+.+..-.. .. ...+..+.+. .++++|++++|.+...- .+.+
T Consensus 87 ---------~~l~i-~g~~v~i~G--L~i~~~~~~~~~-~~-----~~~~~~iav~-G~~~~I~nn~I~~~~~gd~i~i~ 147 (506)
T 1dbg_A 87 ---------AKVEL-RGEHLILEG--IWFKDGNRAIQA-WK-----SHGPGLVAIY-GSYNRITACVFDCFDEANSAYIT 147 (506)
T ss_dssp ---------CEEEE-CSSSEEEES--CEEEEECCCTTT-CC-----TTSCCSEEEC-SSSCEEESCEEESCCSSCSCSEE
T ss_pred ---------ceEEE-EcCCEEEEC--eEEECCCcceee-ee-----cccccceEEe-cCCeEEEeeEEEcCCCCceeeEe
Confidence 01111 125556665 345432210000 00 0012234443 58899999999986431 0222
Q ss_pred -------ecccceEEEEEEEECCCCCCCCc----eeeecC-------ccCEEEEecEEecCCceEecCCCCCcccccc--
Q 012788 206 -------VYCSNVHIQNISVHAPPESPYTV----GIVPDS-------SDNVCIEDCIIAMGHDAISLKSGWDEYGIAY-- 265 (456)
Q Consensus 206 -------~~~~nv~i~n~~i~~~~~~~n~D----Gi~~~~-------s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~-- 265 (456)
...++.+|+++.|.......... ||+++. +++.+|++++|...+ + .+...+++++
T Consensus 148 ~~~~~~~l~g~~n~I~~N~I~Gk~~~G~~i~gnngI~l~~~~~~~~~~~~~~I~nN~f~~~~----~-~~N~~e~iR~G~ 222 (506)
T 1dbg_A 148 TSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPGMYHRVDHCFFSNPQ----K-PGNAGGGIRIGY 222 (506)
T ss_dssp ECCCTTCCCCCSCEEESCEEECCCSSSCSEEECSSCCCSCCCSCCCCCCCCEEESCEEEECC----C-SSSCCCSEEECS
T ss_pred ecccceeeeccccEEECcEEECCcCcceEEecCceeEeccCcccccccCCeEEeCcEEcccc----c-CCCccccEEEEE
Confidence 25667789999999854433333 788775 368999999998643 1 1111111221
Q ss_pred -CCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcceEEEEe
Q 012788 266 -GRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRT 318 (456)
Q Consensus 266 -~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~iks 318 (456)
.+.+.+.+|+|+++... ..|..|-+. ...+.+|+++++.+...++.+..
T Consensus 223 h~m~s~~~~VenN~f~~~-~gg~aim~s---kS~~n~i~~N~~~~~~ggi~l~~ 272 (506)
T 1dbg_A 223 YRNDIGRCLVDSNLFMRQ-DSEAEIITS---KSQENVYYGNTYLNCQGTMNFRH 272 (506)
T ss_dssp STTCBCCCEEESCEEEEE-CSSSEEEEE---ESBSCEEESCEEESCSSEEEEEE
T ss_pred EecccCCcEEECCEEEec-cCcEEEEEE---ecCCEEEECCEEEcccCcEEEee
Confidence 23478999999999875 445544321 11245888888888877777764
|
| >1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=9.2e-07 Score=87.44 Aligned_cols=91 Identities=19% Similarity=0.176 Sum_probs=60.7
Q ss_pred CCCceeeecCccCEEEEecEEecC---CceEecCCCCC---ccc-cccCCCcccEEEEEEEEecCCCCeeEecccccC--
Q 012788 225 PYTVGIVPDSSDNVCIEDCIIAMG---HDAISLKSGWD---EYG-IAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSG-- 295 (456)
Q Consensus 225 ~n~DGi~~~~s~nV~I~n~~i~~g---DD~iai~sg~~---~~g-~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~-- 295 (456)
.+.|+|.+..++||.|++|.|..+ |++.....|++ .+| +.....+.+|+|+||+|... ..+.-+|+....
T Consensus 131 ~~~DaI~i~~s~nVWIDH~s~s~~~~~d~~~~~~~G~~~~~~Dgl~Di~~~s~~VTiS~n~f~~h-~k~~LiG~sd~~~~ 209 (355)
T 1pcl_A 131 AEWDAAVIDNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGALDIKKGSDYVTISYSRFELH-DKTILIGHSDSNGS 209 (355)
T ss_pred ccCceEEecCCCcEEEEeeEEeccccCccccccccCccccccccceeeecCCCcEEEEeeEEcCC-CceEEeCCCCCCcc
Confidence 357999999999999999999864 33332222221 111 11233589999999999875 667777765321
Q ss_pred ---cEEeEEEEeEEEECCc-ceEEE
Q 012788 296 ---GISNVQVEKIHLYDSL-NGIEF 316 (456)
Q Consensus 296 ---~v~nI~v~n~~~~~~~-~gi~i 316 (456)
+..+|++.++.|.+.. +.-++
T Consensus 210 ~d~g~~~vT~hhN~f~~~~~R~Prv 234 (355)
T 1pcl_A 210 QDSGKLRVTFHNNVFDRVTERAPRV 234 (355)
T ss_pred cccCcceEEEECcEEeCCcccCCce
Confidence 3457999999998763 34444
|
| >1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.7e-06 Score=85.61 Aligned_cols=89 Identities=21% Similarity=0.227 Sum_probs=55.0
Q ss_pred ccceEEEEEEEECC--CCCCCCceeeecCccCEEEEecEEec-CCceEecCCCCCccccccCCCcccEEEEEEEEecCC-
Q 012788 208 CSNVHIQNISVHAP--PESPYTVGIVPDSSDNVCIEDCIIAM-GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSS- 283 (456)
Q Consensus 208 ~~nv~i~n~~i~~~--~~~~n~DGi~~~~s~nV~I~n~~i~~-gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~- 283 (456)
++||.|+|++|+.. ......|+|.+..++||.|++|.+.. +|..+.... ..+.+|+|+||+|.+..
T Consensus 132 a~NVIIrnL~i~~~~~~~~~g~DaI~i~~s~nVwIDHcs~s~~~d~~~~~g~----------~~s~~VTISnn~f~~~~~ 201 (359)
T 1idk_A 132 AENIIIQNIAVTDINPKYVWGGDAITLDDCDLVWIDHVTTARIGRQHYVLGT----------SADNRVSLTNNYIDGVSD 201 (359)
T ss_dssp CEEEEEESCEEEEECTTEETSCCSEEECSCEEEEEESCEEEEESSCSEEECC----------CTTCEEEEESCEEECBCS
T ss_pred CCcEEEeCeEEEcccccccccCCceeecCCCcEEEEeeEeecCCCCcEEecc----------cCcceEEEECcEecCCcc
Confidence 44444444444431 11134689999899999999999986 555554311 12899999999997421
Q ss_pred ----CC-----eeEecccccCcEEeEEEEeEEEECC
Q 012788 284 ----GS-----SVAFGSEMSGGISNVQVEKIHLYDS 310 (456)
Q Consensus 284 ----~~-----gi~igs~~~~~v~nI~v~n~~~~~~ 310 (456)
+. +..+. +.-.+|++.++.|.+.
T Consensus 202 ~s~~~~G~h~~~~~L~----G~sd~vT~hhN~f~~~ 233 (359)
T 1idk_A 202 YSATCDGYHYWAIYLD----GDADLVTMKGNYIYHT 233 (359)
T ss_dssp CBTTSSSBBSCCEEEC----CSSCEEEEESCEEESB
T ss_pred cccccCccccceEEEE----ecCCCeEEEceEeecC
Confidence 01 12222 1224789999988765
|
| >1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.3e-06 Score=85.17 Aligned_cols=134 Identities=14% Similarity=0.161 Sum_probs=89.1
Q ss_pred EEEEeeccEEEEeEEEEeCCc------ceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEe
Q 012788 180 VEFISSENVVVSNLTFLNAPA------YNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAIS 253 (456)
Q Consensus 180 i~~~~~~nv~I~~v~i~ns~~------~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~ia 253 (456)
+.+ .+++++++|++|+|+.. -.+.+ .++++.|.+|+|.. +.|++.....+ ..++||+|...-|-|-
T Consensus 89 v~v-~a~~f~~~nlt~~Nt~g~~~~qAvAl~v-~~d~~~f~~c~f~g-----~QDTLy~~~~r-~~~~~c~I~G~vDFIf 160 (319)
T 1gq8_A 89 VAA-VGAGFLARDITFQNTAGAAKHQAVALRV-GSDLSAFYRCDILA-----YQDSLYVHSNR-QFFINCFIAGTVDFIF 160 (319)
T ss_dssp EEE-CSTTCEEEEEEEEECCCGGGCCCCSEEE-CCTTEEEEEEEEEC-----STTCEEECSSE-EEEESCEEEESSSCEE
T ss_pred EEE-ECCCEEEEEeEeEccCCCcCCceEEEEe-cCCcEEEEEeEECc-----cceeeeecCcc-EEEEecEEEeeeeEEe
Confidence 444 47899999999999642 34554 68899999999997 46788887665 4899999998666553
Q ss_pred cCCCCCccccccCCCcccEEEEEEEEecCC-----CCeeEeccc-ccCcEEeEEEEeEEEECCcc--------eEEEE-e
Q 012788 254 LKSGWDEYGIAYGRPTTDVHIRRVLLQSSS-----GSSVAFGSE-MSGGISNVQVEKIHLYDSLN--------GIEFR-T 318 (456)
Q Consensus 254 i~sg~~~~g~~~~~~s~ni~I~n~~~~~~~-----~~gi~igs~-~~~~v~nI~v~n~~~~~~~~--------gi~ik-s 318 (456)
| .....++||++.... ...|...+. ....-....|.||++.+... ...+. .
T Consensus 161 ---G-----------~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRp 226 (319)
T 1gq8_A 161 ---G-----------NAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRP 226 (319)
T ss_dssp ---E-----------SCEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECC
T ss_pred ---c-----------CCcEEEEeeEEEEecCCCCCceEEEeCCCCCCCCCceEEEECCEEecCCCccccccceeEEeccc
Confidence 2 244889999987531 112332221 12345678999999986542 22332 2
Q ss_pred cCCCCceEEeEEEEceEecCc
Q 012788 319 TKGRGGYIRQIVISDAELYNI 339 (456)
Q Consensus 319 ~~g~~g~v~nI~~~ni~~~~~ 339 (456)
|. ....++|.+..|.+.
T Consensus 227 W~----~~sr~v~~~t~~~~~ 243 (319)
T 1gq8_A 227 WK----EYSRTVVMQSSITNV 243 (319)
T ss_dssp SS----TTCEEEEESCEECTT
T ss_pred CC----CcceEEEEeccCCCc
Confidence 32 235788888888764
|
| >3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.7e-06 Score=84.21 Aligned_cols=108 Identities=13% Similarity=0.131 Sum_probs=68.5
Q ss_pred eeccEEEEeEEEEeCCc--------------------ceEEee-cccceEEEEEEEECCCCCCCCceeeecCccCEEEEe
Q 012788 184 SSENVVVSNLTFLNAPA--------------------YNIHPV-YCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIED 242 (456)
Q Consensus 184 ~~~nv~I~~v~i~ns~~--------------------~~i~~~-~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n 242 (456)
.+++++++|++|+|+.. -.+.+. ..+...+.+|++.. +-|.+......+..+++
T Consensus 120 ~a~~f~a~nitf~Nt~~~~~~~~~~~~~p~~~~~~QAvAl~v~~~~D~~~f~~C~f~G-----~QDTLy~~~~gr~yf~~ 194 (364)
T 3uw0_A 120 NAPNFTAENLTIRNDFDFPANKKKADTDPTKLKDTQAVALLLAENSDKARFKAVKLEG-----YQDTLYSKTGSRSYFSD 194 (364)
T ss_dssp CSTTCEEEEEEEEECCCHHHHHHSCTTCTTCCSCCCCCSEEECTTCEEEEEEEEEEEC-----SBSCEEECTTCEEEEES
T ss_pred ECCCEEEEeeeeEcCCcccccccccccccccccCCccEEEEEecCCCeEEEEeeEEEe-----cccceEeCCCCCEEEEc
Confidence 57899999999999842 234444 57888888998887 35777776456778888
Q ss_pred cEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCC-------CCeeEecccccCcEEeEEEEeEEEECC
Q 012788 243 CIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSS-------GSSVAFGSEMSGGISNVQVEKIHLYDS 310 (456)
Q Consensus 243 ~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~-------~~gi~igs~~~~~v~nI~v~n~~~~~~ 310 (456)
|+|+..-|=|- | .-...++||++..-. ..-|.-.+.....-..+.|.||++.+.
T Consensus 195 c~I~GtvDFIF---G-----------~a~a~f~~c~i~~~~~~~~~~~~g~ITA~~~~~~~~~G~vf~~c~i~~~ 255 (364)
T 3uw0_A 195 CEISGHVDFIF---G-----------SGITVFDNCNIVARDRSDIEPPYGYITAPSTLTTSPYGLIFINSRLTKE 255 (364)
T ss_dssp CEEEESEEEEE---E-----------SSEEEEESCEEEECCCSSCSSCCEEEEEECCCTTCSCCEEEESCEEEEC
T ss_pred CEEEcCCCEEC---C-----------cceEEEEeeEEEEeccCcccCCccEEEeCCcCCCCCcEEEEEeeEEecC
Confidence 88887555442 1 345778888876420 011222221112233477788887754
|
| >2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} | Back alignment and structure |
|---|
Probab=98.48 E-value=4.3e-05 Score=71.73 Aligned_cols=175 Identities=19% Similarity=0.238 Sum_probs=120.1
Q ss_pred CceEEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCCceeeeeeEeccceEEEeccCcEEEecCCCCCCCc
Q 012788 38 PHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDV 117 (456)
Q Consensus 38 ~~~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~l~L~s~~tL~l~~ga~i~~~~~~~~~~~ 117 (456)
++++.+++|||.+|--+||+++|.+.+.. -..|+||.|.|....+.+ +-..|+...+++|+--.....|..
T Consensus 62 arvls~k~fga~~~~~~d~~~~~~~sl~s--------~~~v~i~~gvf~ss~i~~-~~c~l~g~g~g~~~~~~~~gn~lv 132 (542)
T 2x3h_A 62 ARVLTSKPFGAAGDATTDDTEVIAASLNS--------QKAVTISDGVFSSSGINS-NYCNLDGRGSGVLSHRSSTGNYLV 132 (542)
T ss_dssp HHBCBSSCTTCCCBSSSCCHHHHHHHHTS--------SSCEECCSEEEEECCEEE-SCCEEECTTTEEEEECSSSSCCEE
T ss_pred heeeecccccccCCcccCcHHHHHhhhcc--------cccEeccccccccccccc-ccccccccCCceeeeecCCCCEEE
Confidence 45678999999999999999999999873 356899999997655554 467889888899876444333332
Q ss_pred CCCCCCCCcccccCCCcceeeEEEeeeeeEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEEe
Q 012788 118 VDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLN 197 (456)
Q Consensus 118 ~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~n 197 (456)
.. +| ..-.+++++|.|. -. ......+.+.|....+|+|+++.+.|
T Consensus 133 fn-~p-----------------~~g~ls~~ti~~n-k~----------------~ds~qg~qvs~~gg~dvsv~~i~fsn 177 (542)
T 2x3h_A 133 FN-NP-----------------RTGRLSNITVESN-KA----------------TDTTQGQQVSLAGGSDVTVSDVNFSN 177 (542)
T ss_dssp EE-SC-----------------EEEEEEEEEEECC-CS----------------STTCBCCSEEEESCEEEEEEEEEEEE
T ss_pred Ee-CC-----------------CCcceeeEEEecc-cC----------------CccccceEEEecCCCcceEeeeeeee
Confidence 11 00 1134677888884 10 11233556899999999999999999
Q ss_pred CCcceEEeec------ccceEEEEEEEECCCCCCCC-ceee-ecCccCEEEEecEEec--CCceEecCC
Q 012788 198 APAYNIHPVY------CSNVHIQNISVHAPPESPYT-VGIV-PDSSDNVCIEDCIIAM--GHDAISLKS 256 (456)
Q Consensus 198 s~~~~i~~~~------~~nv~i~n~~i~~~~~~~n~-DGi~-~~~s~nV~I~n~~i~~--gDD~iai~s 256 (456)
...-++.+.. -+...|++++=.-..+..|. -|.. ++++.|-+|++..-++ .-.++.+|.
T Consensus 178 ~~g~gfsliayp~~~~p~g~~i~~irg~y~g~a~nk~agcvl~dss~nslid~via~nypqfgavelk~ 246 (542)
T 2x3h_A 178 VKGTGFSLIAYPNDAPPDGLMIKGIRGSYSGYATNKAAGCVLADSSVNSLIDNVIAKNYPQFGAVELKG 246 (542)
T ss_dssp ECSBEEEEEEECSSSCCBSCEEEEEEEEECSCCTTCSEEEEEEESCBSCEEEEEEEESCCTTEEEEEET
T ss_pred cCCCceeEEEcCCCCCCCceEEeccccceeccccccccceEEeccchhhhhhhhhhhcCCccceEEeec
Confidence 7765554421 24567788776655444443 3444 4678888998888877 455666665
|
| >3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.2e-05 Score=78.72 Aligned_cols=74 Identities=12% Similarity=0.081 Sum_probs=56.1
Q ss_pred CCceeeecCccCEEEEecEEecC-CceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccC------cEE
Q 012788 226 YTVGIVPDSSDNVCIEDCIIAMG-HDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSG------GIS 298 (456)
Q Consensus 226 n~DGi~~~~s~nV~I~n~~i~~g-DD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~------~v~ 298 (456)
..|+|.+..++||.|++|.+..+ |..+.++.+ +.+|+|+||.|... ..+.-+|+.... +-.
T Consensus 115 ~~DaI~i~~s~nVWIDHcs~s~~~Dg~idi~~~-----------s~~vTISnn~f~~h-~k~~LiG~sd~~~~~~d~g~~ 182 (340)
T 3zsc_A 115 DFDYINVENSHHIWIDHITFVNGNDGAVDIKKY-----------SNYITVSWNKFVDH-DKVSLVGSSDKEDPEQAGQAY 182 (340)
T ss_dssp CCCSEEEESCEEEEEESCEEESCSSCSEEEETT-----------CEEEEEESCEEESC-SBCCEECCCTTSCHHHHHHSC
T ss_pred CCCeEEEecCCcEEEEeeeeccCCccceEEecC-----------CceEEEECcEeccC-ceeeEeCcCCCCccccccCCc
Confidence 57999999999999999999885 444777654 89999999999875 556667754321 135
Q ss_pred eEEEEeEEEECCc
Q 012788 299 NVQVEKIHLYDSL 311 (456)
Q Consensus 299 nI~v~n~~~~~~~ 311 (456)
+|++.++.|.+..
T Consensus 183 ~vT~hhN~f~~~~ 195 (340)
T 3zsc_A 183 KVTYHHNYFKNLI 195 (340)
T ss_dssp EEEEESCEEESCC
T ss_pred EEEEECeEecCCC
Confidence 7999999998753
|
| >1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.1e-05 Score=78.42 Aligned_cols=134 Identities=12% Similarity=0.131 Sum_probs=88.9
Q ss_pred EEEEeeccEEEEeEEEEeCCc------ceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEe
Q 012788 180 VEFISSENVVVSNLTFLNAPA------YNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAIS 253 (456)
Q Consensus 180 i~~~~~~nv~I~~v~i~ns~~------~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~ia 253 (456)
+.+ .+++++++|++|+|+.. -.+.+ .++++.|.+|++.. +.|++.....++ .++||+|...-|-|-
T Consensus 85 v~v-~a~~f~~~~lt~~Nt~g~~~~qAvAl~v-~~d~~~f~~c~f~g-----~QDTLy~~~~r~-~~~~c~I~G~vDFIf 156 (317)
T 1xg2_A 85 LAA-VGQGFILQDICIQNTAGPAKDQAVALRV-GADMSVINRCRIDA-----YQDTLYAHSQRQ-FYRDSYVTGTVDFIF 156 (317)
T ss_dssp EEE-CSTTCEEESCEEEECCCGGGCCCCSEEE-CCTTEEEESCEEEC-----STTCEEECSSEE-EEESCEEEESSSCEE
T ss_pred EEE-ECCCEEEEEeEEecccCCccCceEEEEE-eCCcEEEEEeEeCc-----cccceeecCccE-EEEeeEEEeceeEEc
Confidence 444 58899999999999742 34554 68889999999997 367888776554 899999997666553
Q ss_pred cCCCCCccccccCCCcccEEEEEEEEecCC-----CCeeEeccc-ccCcEEeEEEEeEEEECCcc--------eEEEE-e
Q 012788 254 LKSGWDEYGIAYGRPTTDVHIRRVLLQSSS-----GSSVAFGSE-MSGGISNVQVEKIHLYDSLN--------GIEFR-T 318 (456)
Q Consensus 254 i~sg~~~~g~~~~~~s~ni~I~n~~~~~~~-----~~gi~igs~-~~~~v~nI~v~n~~~~~~~~--------gi~ik-s 318 (456)
| .....++||++.... ...|...+. .........|.||++.+... ...+. .
T Consensus 157 ---G-----------~~~avf~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRp 222 (317)
T 1xg2_A 157 ---G-----------NAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRP 222 (317)
T ss_dssp ---E-----------CCEEEEESCEEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTTSCEEEECC
T ss_pred ---C-----------CceEEEeeeEEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCccccccceeEEeecc
Confidence 1 244889999987531 112333221 12345678999999986542 22332 2
Q ss_pred cCCCCceEEeEEEEceEecCc
Q 012788 319 TKGRGGYIRQIVISDAELYNI 339 (456)
Q Consensus 319 ~~g~~g~v~nI~~~ni~~~~~ 339 (456)
|. ....++|.+..|.+.
T Consensus 223 W~----~~sr~v~~~t~~~~~ 239 (317)
T 1xg2_A 223 WK----EYSRTVVMESYLGGL 239 (317)
T ss_dssp SS----TTCEEEEESCEECTT
T ss_pred cC----CCceEEEEecccCCc
Confidence 32 235788888888864
|
| >1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=2.2e-06 Score=84.50 Aligned_cols=140 Identities=11% Similarity=0.097 Sum_probs=87.2
Q ss_pred EEEEeeccEEEEeEEEEeCC-cceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceE-ecCCC
Q 012788 180 VEFISSENVVVSNLTFLNAP-AYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAI-SLKSG 257 (456)
Q Consensus 180 i~~~~~~nv~I~~v~i~ns~-~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~i-ai~sg 257 (456)
|.+..++||.|++++|++.. .+.-.+...+.-.. + .. .....|||.+..+++|.|++|.|..+.|++ .++.+
T Consensus 108 i~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~-g--~~---~~~~~DaI~i~~s~nVwIDHcs~s~~~Dg~id~~~~ 181 (346)
T 1pxz_A 108 LFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGV-E--PV---HAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLG 181 (346)
T ss_dssp EEEESCEEEEEESCEEECCCCCCSEEEEEETTTEE-E--EE---CCCCCCSEEEESCEEEEEESCEEECCSSEEEEEESS
T ss_pred EEEEccCCEEEEeeEEEeeccCCCceEEeccCccc-c--cc---cCCCCCEEEEecCceEEEEeeEEecCCCCcEeeccC
Confidence 66667888999999988763 11000000000000 0 00 134689999999999999999999977776 56433
Q ss_pred CCccccccCCCcccEEEEEEEEecCCCCeeEeccccc---CcEEeEEEEeEEE-ECCc-ceEEEEecCCCCceEEeEEEE
Q 012788 258 WDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMS---GGISNVQVEKIHL-YDSL-NGIEFRTTKGRGGYIRQIVIS 332 (456)
Q Consensus 258 ~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~---~~v~nI~v~n~~~-~~~~-~gi~iks~~g~~g~v~nI~~~ 332 (456)
+++|+|+||+|..- ..++-+|+... +...+|++.++.| .+.. +.-+++. ..+.+.
T Consensus 182 -----------s~~vTISnn~f~~H-~k~~l~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r~--------g~~hv~ 241 (346)
T 1pxz_A 182 -----------STGITISNNHFFNH-HKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARY--------GLVHVA 241 (346)
T ss_dssp -----------CEEEEEESCEEESE-EEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEES--------SEEEEE
T ss_pred -----------cceEEEEeeEEecC-CceeEECCCCccccCCceEEEEEeeEEeCCccccCccEec--------ceEEEE
Confidence 89999999999864 55777776532 2345899999998 5542 3333431 235556
Q ss_pred ceEecCcc-eeEEE
Q 012788 333 DAELYNIN-VAFGA 345 (456)
Q Consensus 333 ni~~~~~~-~~i~i 345 (456)
|..+.+.. +++..
T Consensus 242 NN~~~~~~~~~i~~ 255 (346)
T 1pxz_A 242 NNNYDPWNIYAIGG 255 (346)
T ss_dssp SCEECCCSSCSEEE
T ss_pred eeEEEcccceEEec
Confidence 66655533 45444
|
| >2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A | Back alignment and structure |
|---|
Probab=98.36 E-value=7e-06 Score=80.52 Aligned_cols=82 Identities=9% Similarity=0.047 Sum_probs=48.0
Q ss_pred CCceeeec-----CccCEEEEecEEecCC-ceEecCCCCCc-cc-cccCCCcccEEEEEEEEecCCCCeeEeccccc---
Q 012788 226 YTVGIVPD-----SSDNVCIEDCIIAMGH-DAISLKSGWDE-YG-IAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMS--- 294 (456)
Q Consensus 226 n~DGi~~~-----~s~nV~I~n~~i~~gD-D~iai~sg~~~-~g-~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~--- 294 (456)
..|+|.+. .++||.|++|.+..+. .|... +... +| +.+...+.+|+|+||+|... ..++-+|+...
T Consensus 112 ~~DaI~i~g~~~~~s~nVWIDH~s~s~~~~~~~~~--~~~~~Dg~idi~~~s~~VTISnn~f~~h-~k~~L~G~sd~~~~ 188 (330)
T 2qy1_A 112 DADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGA--GDASFDGGIDMKKGVHHVTVSYNYVYNY-QKVALNGYSDSDTK 188 (330)
T ss_dssp GCCSEEEECBTTBCCEEEEEESCEEECCCCCCTTC--TTCSSCCSEEEESSCEEEEEESCEEEEE-EECCEESSSTTCGG
T ss_pred CCcceeeccccCcccccEEEEeEEEEccccccccC--CcceeecccccccCcceEEEEcceeccC-CeEEEECCCCcccc
Confidence 46888887 5888888888886432 11100 0000 01 11223488899999988764 44555665321
Q ss_pred CcEEeEEEEeEEEECC
Q 012788 295 GGISNVQVEKIHLYDS 310 (456)
Q Consensus 295 ~~v~nI~v~n~~~~~~ 310 (456)
....+|++.++.|.+.
T Consensus 189 ~~~~~vT~h~N~f~~~ 204 (330)
T 2qy1_A 189 NSAARTTYHHNRFENV 204 (330)
T ss_dssp GGGCEEEEESCEEEEE
T ss_pred CCCceEEEECcEEcCC
Confidence 1125788888888764
|
| >1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=2.8e-06 Score=83.80 Aligned_cols=133 Identities=13% Similarity=0.154 Sum_probs=82.3
Q ss_pred eccEEEEeE----EEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCc
Q 012788 185 SENVVVSNL----TFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDE 260 (456)
Q Consensus 185 ~~nv~I~~v----~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~ 260 (456)
.+|++|.|. +|.. ...++.+..++||.|+|++|.......++| |.-..-.+. ...-...+|+|.+..
T Consensus 87 ~sn~TI~G~ga~~~i~G-~G~gi~i~~a~NVIIrnl~i~~~~~~~~~~-I~~~~~~~~---g~~~~~~~DaI~i~~---- 157 (346)
T 1pxz_A 87 AGHKTIDGRGADVHLGN-GGPCLFMRKVSHVILHSLHIHGCNTSVLGD-VLVSESIGV---EPVHAQDGDAITMRN---- 157 (346)
T ss_dssp CSSEEEECTTSCEEEET-TSCCEEEESCEEEEEESCEEECCCCCCSEE-EEEETTTEE---EEECCCCCCSEEEES----
T ss_pred cCCeEEEccCCceEEeC-CcceEEEEccCCEEEEeeEEEeeccCCCce-EEeccCccc---ccccCCCCCEEEEec----
Confidence 347777763 2222 135677788999999999998642111110 100000000 011124678888875
Q ss_pred cccccCCCcccEEEEEEEEecCCCCee-EecccccCcEEeEEEEeEEEECCcceEEEEecCCCC-ceEEeEEEEceEe-c
Q 012788 261 YGIAYGRPTTDVHIRRVLLQSSSGSSV-AFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRG-GYIRQIVISDAEL-Y 337 (456)
Q Consensus 261 ~g~~~~~~s~ni~I~n~~~~~~~~~gi-~igs~~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~-g~v~nI~~~ni~~-~ 337 (456)
++||.|.+|++... .+|+ .+. ....+|+|+||.|.+...++.+....... ....+|+|.+..+ .
T Consensus 158 --------s~nVwIDHcs~s~~-~Dg~id~~----~~s~~vTISnn~f~~H~k~~l~G~sd~~~~d~~~~vT~~~N~f~~ 224 (346)
T 1pxz_A 158 --------VTNAWIDHNSLSDC-SDGLIDVT----LGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGP 224 (346)
T ss_dssp --------CEEEEEESCEEECC-SSEEEEEE----SSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECS
T ss_pred --------CceEEEEeeEEecC-CCCcEeec----cCcceEEEEeeEEecCCceeEECCCCccccCCceEEEEEeeEEeC
Confidence 79999999999987 6665 453 35789999999999877787776543211 1124788888888 6
Q ss_pred Cc
Q 012788 338 NI 339 (456)
Q Consensus 338 ~~ 339 (456)
+.
T Consensus 225 ~~ 226 (346)
T 1pxz_A 225 NA 226 (346)
T ss_dssp SE
T ss_pred Cc
Confidence 54
|
| >3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.8e-05 Score=77.49 Aligned_cols=168 Identities=11% Similarity=0.048 Sum_probs=108.6
Q ss_pred eeEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEEeC-----------CcceEEeecccceEE
Q 012788 145 RDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNA-----------PAYNIHPVYCSNVHI 213 (456)
Q Consensus 145 ~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns-----------~~~~i~~~~~~nv~i 213 (456)
..+.|.. +=||+|++.. .- ....|.+.+++||.|++++|++. ....|.+..+++|.|
T Consensus 62 ~~l~v~s-nkTI~G~ga~--~I---------~G~Gi~I~~a~NVIIrnl~i~~~~~~~~~~~~~~~~DaI~i~~s~nVWI 129 (340)
T 3zsc_A 62 REIKVLS-DKTIVGINDA--KI---------VGGGLVIKDAQNVIIRNIHFEGFYMEDDPRGKKYDFDYINVENSHHIWI 129 (340)
T ss_dssp EEEEECS-SEEEEEEEEE--EE---------EEEEEEEESCEEEEEESCEEECCCCTTCTTSCSSCCCSEEEESCEEEEE
T ss_pred ceEEecC-CCEEEeccCc--EE---------ecCceEEEcCceEEEeCeEEECCccccCccCCcCCCCeEEEecCCcEEE
Confidence 3577744 5799998764 10 12358888899999999999985 345788999999999
Q ss_pred EEEEEECCCCCCCCce-eeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecc
Q 012788 214 QNISVHAPPESPYTVG-IVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGS 291 (456)
Q Consensus 214 ~n~~i~~~~~~~n~DG-i~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs 291 (456)
++|++... .|| +++. .+++|+|.+|.|...+-+.-+.... .++........+|++.++.+.+...+.-++..
T Consensus 130 DHcs~s~~-----~Dg~idi~~~s~~vTISnn~f~~h~k~~LiG~sd-~~~~~~d~g~~~vT~hhN~f~~~~~R~Pr~r~ 203 (340)
T 3zsc_A 130 DHITFVNG-----NDGAVDIKKYSNYITVSWNKFVDHDKVSLVGSSD-KEDPEQAGQAYKVTYHHNYFKNLIQRMPRIRF 203 (340)
T ss_dssp ESCEEESC-----SSCSEEEETTCEEEEEESCEEESCSBCCEECCCT-TSCHHHHHHSCEEEEESCEEESCCBCTTEEES
T ss_pred EeeeeccC-----CccceEEecCCceEEEECcEeccCceeeEeCcCC-CCccccccCCcEEEEECeEecCCCCCCCcccC
Confidence 99999874 566 6665 5899999999999755554444321 11000000124799999999764333333321
Q ss_pred cccCcEEeEEEEeEEEECC---------cceEEEEecCCCCceEEeEEEEceEecCcce
Q 012788 292 EMSGGISNVQVEKIHLYDS---------LNGIEFRTTKGRGGYIRQIVISDAELYNINV 341 (456)
Q Consensus 292 ~~~~~v~nI~v~n~~~~~~---------~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~ 341 (456)
+ .+++.|+.+.+. -.+-.|....+ ..|.+|+..+++++.
T Consensus 204 ---G---~~Hv~NN~~~n~~~~~~~~~~~~~yai~~~~~-----a~i~~E~N~F~~~~~ 251 (340)
T 3zsc_A 204 ---G---MAHVFNNFYSMGLRTGVSGNVFPIYGVASAMG-----AKVHVEGNYFMGYGA 251 (340)
T ss_dssp ---S---EEEEESCEEECCCCCSCSSCCSCCEEEEEETT-----CEEEEESCEEECSCH
T ss_pred ---C---eEEEEccEEECCccccccccceeeeeEecCCC-----CEEEEECcEEECCCc
Confidence 1 468889999881 11112222221 467777777777666
|
| >1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.2e-05 Score=79.65 Aligned_cols=70 Identities=26% Similarity=0.249 Sum_probs=45.6
Q ss_pred CCceeeecCccCEEEEecEEec-CCceEe-cCCCCCccccccCCCcccEEEEEEEEecCCC--------C--eeEecccc
Q 012788 226 YTVGIVPDSSDNVCIEDCIIAM-GHDAIS-LKSGWDEYGIAYGRPTTDVHIRRVLLQSSSG--------S--SVAFGSEM 293 (456)
Q Consensus 226 n~DGi~~~~s~nV~I~n~~i~~-gDD~ia-i~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~--------~--gi~igs~~ 293 (456)
..|+|.+..+++|.|++|.+.. +|..+. ... .+.+|+|+||+|..... | +..+.
T Consensus 152 ~~DaI~i~~s~nvwIDHcs~s~~~d~~~~~~~~-----------~s~~vTISnn~f~~~~~~s~~~~G~H~~~~~l~--- 217 (359)
T 1qcx_A 152 GGDAITVDDSDLVWIDHVTTARIGRQHIVLGTS-----------ADNRVTISYSLIDGRSDYSATCNGHHYWGVYLD--- 217 (359)
T ss_dssp SCCSEEEESCCCEEEESCEEEEESSCSEEECSS-----------CCEEEEEESCEEECBCSSBTTSSSBBSCCEEEC---
T ss_pred cCceeEecCCceEEEEeeEeeccCcCceeeccc-----------ccccEEEECcEecCCccccccCcccccceeEEe---
Confidence 4588988888999999999876 444442 222 27899999999974210 1 22221
Q ss_pred cCcEEeEEEEeEEEECC
Q 012788 294 SGGISNVQVEKIHLYDS 310 (456)
Q Consensus 294 ~~~v~nI~v~n~~~~~~ 310 (456)
+.-.++++.++.+.+.
T Consensus 218 -G~sd~vT~~~N~f~~~ 233 (359)
T 1qcx_A 218 -GSNDMVTLKGNYFYNL 233 (359)
T ss_dssp -CSSEEEEEESCEEESB
T ss_pred -cCCCCeehcccEeccC
Confidence 1224788888888754
|
| >3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.7e-05 Score=77.30 Aligned_cols=116 Identities=10% Similarity=0.088 Sum_probs=73.2
Q ss_pred CCceeeecC-ccCEEEEecEEecC----------CceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEeccccc
Q 012788 226 YTVGIVPDS-SDNVCIEDCIIAMG----------HDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMS 294 (456)
Q Consensus 226 n~DGi~~~~-s~nV~I~n~~i~~g----------DD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~ 294 (456)
..|+|.+.. ++||.|++|.+..+ |..+.++.+ +.+|+|+||+|..- ..+.-+|+...
T Consensus 119 ~~DaI~i~~~s~nVWIDH~s~s~~~~g~~~~~~~Dgl~di~~~-----------s~~VTISnn~f~~h-~k~~LiG~sd~ 186 (326)
T 3vmv_A 119 EGTAIEVTDDSKNVWIDHNEFYSEFPGNGDSDYYDGLVDMKRN-----------AEYITVSWNKFENH-WKTMLVGHTDN 186 (326)
T ss_dssp TSCSEEEETTCEEEEEESCEEECCSSTTSCTTSSCCSEEECTT-----------CEEEEEESCEEEEE-EECEEECSSSC
T ss_pred CCCeEEEecCCCcEEEEeeEEeccccCCcCccccCcceEecCC-----------CceEEEEceEEecC-ceEEEECCCCC
Confidence 578999986 89999999999632 444555543 89999999999864 55677776432
Q ss_pred C--cEEeEEEEeEEEECCc-ceEEEEecCCCCceEEeEEEEceEecCc-ceeEEEeccCCCCCCCCCCCCCCCeEEEEEE
Q 012788 295 G--GISNVQVEKIHLYDSL-NGIEFRTTKGRGGYIRQIVISDAELYNI-NVAFGACGNCGSHPDDDFDPDALPAIDQITF 370 (456)
Q Consensus 295 ~--~v~nI~v~n~~~~~~~-~gi~iks~~g~~g~v~nI~~~ni~~~~~-~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~ 370 (456)
. .-.+|++.++.+.+.. +.-+++. | .+.+-|..+.+. .+++..... ....+++-.|
T Consensus 187 ~~~~~~~vT~~~N~f~~~~~R~Pr~r~-----G---~~Hv~NN~~~n~~~~~~~~~~~------------a~v~~e~N~F 246 (326)
T 3vmv_A 187 ASLAPDKITYHHNYFNNLNSRVPLIRY-----A---DVHMFNNYFKDINDTAINSRVG------------ARVFVENNYF 246 (326)
T ss_dssp GGGCCEEEEEESCEEEEEEECTTEEES-----C---EEEEESCEEEEESSCSEEEETT------------CEEEEESCEE
T ss_pred CcccCccEEEEeeEecCCcCcCCcccC-----C---cEEEEccEEECCCceEEeecCC------------cEEEEEceEE
Confidence 1 1257899998887542 2223431 2 244555555443 245444321 1136788888
Q ss_pred EEE
Q 012788 371 KDI 373 (456)
Q Consensus 371 ~nI 373 (456)
++.
T Consensus 247 ~~~ 249 (326)
T 3vmv_A 247 DNV 249 (326)
T ss_dssp EEE
T ss_pred ECC
Confidence 887
|
| >2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A | Back alignment and structure |
|---|
Probab=98.15 E-value=1.6e-05 Score=77.96 Aligned_cols=151 Identities=13% Similarity=0.047 Sum_probs=96.8
Q ss_pred CeeEEEE-eeccEEEEeEEEEeCC----cceEEee-----cccceEEEEEEEECCCC------CCCCce-eeec-CccCE
Q 012788 177 PHLVEFI-SSENVVVSNLTFLNAP----AYNIHPV-----YCSNVHIQNISVHAPPE------SPYTVG-IVPD-SSDNV 238 (456)
Q Consensus 177 p~~i~~~-~~~nv~I~~v~i~ns~----~~~i~~~-----~~~nv~i~n~~i~~~~~------~~n~DG-i~~~-~s~nV 238 (456)
...|.+. +++||.|++++|++.. ...|.+. .+++|.|++|++....+ ..-.|| +++. .+.+|
T Consensus 85 g~gl~i~~~~~NVIIrnl~i~~~~~~~~~DaI~i~g~~~~~s~nVWIDH~s~s~~~~~~~~~~~~~~Dg~idi~~~s~~V 164 (330)
T 2qy1_A 85 NFGIRVVGNAHNVIIQNMTIGLLQGGEDADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHV 164 (330)
T ss_dssp SSEEEEESSCEEEEEESCEEESCSSGGGCCSEEEECBTTBCCEEEEEESCEEECCCCCCTTCTTCSSCCSEEEESSCEEE
T ss_pred eeeEEEeCCCCeEEEeCeEEeCCCCCCCCcceeeccccCcccccEEEEeEEEEccccccccCCcceeecccccccCcceE
Confidence 3468888 8999999999999864 4678888 69999999999975321 111254 4554 58999
Q ss_pred EEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECC-cceEEEE
Q 012788 239 CIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDS-LNGIEFR 317 (456)
Q Consensus 239 ~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~-~~gi~ik 317 (456)
+|++|+|...+-+.-+.+. +.+.. ....+|++.++.+.+...+.-++. .+ .+++.|+.+.+. ..++...
T Consensus 165 TISnn~f~~h~k~~L~G~s-d~~~~---~~~~~vT~h~N~f~~~~~R~Pr~r----~G--~~hv~NN~~~n~~~~~i~~~ 234 (330)
T 2qy1_A 165 TVSYNYVYNYQKVALNGYS-DSDTK---NSAARTTYHHNRFENVESRVPLQR----FG--LSHIYNNYFNNVTTSGINVR 234 (330)
T ss_dssp EEESCEEEEEEECCEESSS-TTCGG---GGGCEEEEESCEEEEEEECTTEEE----SS--EEEEESCEEEEECSCSEEEE
T ss_pred EEEcceeccCCeEEEECCC-Ccccc---CCCceEEEECcEEcCCCCCCCcee----cc--eEEEEeeEEEcccceEeccC
Confidence 9999999875544444442 11110 012589999888865312222232 11 378888888764 3454432
Q ss_pred ecCCCCceEEeEEEEceEecCcceeEE
Q 012788 318 TTKGRGGYIRQIVISDAELYNINVAFG 344 (456)
Q Consensus 318 s~~g~~g~v~nI~~~ni~~~~~~~~i~ 344 (456)
.. ..|.+|+..+++.+.|+.
T Consensus 235 ~~-------~~i~~e~N~F~~~~~p~~ 254 (330)
T 2qy1_A 235 MG-------GIAKIESNYFENIKNPVT 254 (330)
T ss_dssp TT-------CEEEEESCEEEEEESSEE
T ss_pred CC-------cEEEEEccEEECCCCcee
Confidence 21 357777777777666654
|
| >1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=9.1e-06 Score=80.26 Aligned_cols=130 Identities=15% Similarity=0.088 Sum_probs=85.2
Q ss_pred eEEEEe-eccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCC-CCCCceeeecCccCEEEEecEEecC-CceEec-
Q 012788 179 LVEFIS-SENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPE-SPYTVGIVPDSSDNVCIEDCIIAMG-HDAISL- 254 (456)
Q Consensus 179 ~i~~~~-~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~-~~n~DGi~~~~s~nV~I~n~~i~~g-DD~iai- 254 (456)
.+.+.. ..|++|.|.+-. ....+|.+..++||.|+|++|...+. ....|+|.+..++||.|++|.|..+ +.|...
T Consensus 81 ~~~i~~~~sn~TI~G~~~~-~~g~gl~i~~~~NVIIrnl~i~~~~~~~~~~DaI~i~~s~nVWIDH~s~s~~~~~~~g~~ 159 (353)
T 1air_A 81 GVEIKEFTKGITIIGANGS-SANFGIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVDDSPNVWVDHNELFAANHECDGTP 159 (353)
T ss_dssp EEEEESBCSCEEEEECTTC-CBSSEEEEESCCSEEEESCEEESCSCGGGTCCSEEEESCCSEEEESCEEECCSCCCTTCG
T ss_pred ceEEEecCCCEEEEeccCC-CCCceEEEeccCcEEEeccEEEeCCCCCCCCCeEEeeCCCcEEEEeeEEecCCccccccc
Confidence 456654 467887775311 12457888899999999999996432 3457999999999999999999853 222110
Q ss_pred CCCCCccc-cccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECC
Q 012788 255 KSGWDEYG-IAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDS 310 (456)
Q Consensus 255 ~sg~~~~g-~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~ 310 (456)
+.....+| +.+...+.+|+|+||+|.+. ..+.-+|+.......+|++.++.|.+.
T Consensus 160 ~~~~~~DGl~di~~~s~~VTISnn~f~~h-~k~~LiG~sd~~~g~~vT~hhN~f~~~ 215 (353)
T 1air_A 160 DNDTTFESAVDIKGASNTVTVSYNYIHGV-KKVGLDGSSSSDTGRNITYHHNYYNDV 215 (353)
T ss_dssp GGCCSSCCSEEEESSCCEEEEESCEEEEE-EECCEESSSTTCCCCEEEEESCEEEEE
T ss_pred ccccccccceeeecccCcEEEEeeEEcCC-CceeEECCCcCCCCceEEEEceEEcCC
Confidence 00000011 11223589999999999864 445556665322226899999999765
|
| >2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=3.2e-05 Score=76.68 Aligned_cols=130 Identities=12% Similarity=0.126 Sum_probs=97.5
Q ss_pred ccEEEEeEEEEeC-----C------cceEEeec-ccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEe
Q 012788 186 ENVVVSNLTFLNA-----P------AYNIHPVY-CSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAIS 253 (456)
Q Consensus 186 ~nv~I~~v~i~ns-----~------~~~i~~~~-~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~ia 253 (456)
++|+|++++|++. . .-+|.+.. .++++|++++|... .-||.+..+++.+|++++|.....||.
T Consensus 136 s~V~~~~v~I~G~~~~~~G~s~~~~dAGI~v~~~~d~~~I~nn~i~~~-----~fGI~l~~a~~~~I~~N~I~e~GNgI~ 210 (410)
T 2inu_A 136 SGIVFRDFCLDGVGFTPGKNSYHNGKTGIEVASDNDSFHITGMGFVYL-----EHALIVRGADALRVNDNMIAECGNCVE 210 (410)
T ss_dssp ECCEEESCEEECCCCSSSTTSCCCSCEEEEECSCEESCEEESCEEESC-----SEEEEETTEESCEEESCEEESSSEEEE
T ss_pred CCcEECCEEEECCEeecCCCCcccCceeEEEeccCCeEEEECCEEecc-----cEEEEEccCCCcEEECCEEEecCCcee
Confidence 6777777777766 3 23677765 88899999999984 569999999999999999997778898
Q ss_pred cCCCCCccccccCCCcccEEEEEEEEecCCCCe--eEecccccCcEEeEEEEeEEE-ECCcceEEEEecCCCCceEEeEE
Q 012788 254 LKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSS--VAFGSEMSGGISNVQVEKIHL-YDSLNGIEFRTTKGRGGYIRQIV 330 (456)
Q Consensus 254 i~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~g--i~igs~~~~~v~nI~v~n~~~-~~~~~gi~iks~~g~~g~v~nI~ 330 (456)
+... ++...|+|+.+... .+| |.+. ...+.+|+++.+ .....|+.+... .+..
T Consensus 211 L~G~-----------~~~~~I~~N~i~~~-~dG~gIyl~-----ns~~~~I~~N~i~~~~R~gIh~m~s-------~~~~ 266 (410)
T 2inu_A 211 LTGA-----------GQATIVSGNHMGAG-PDGVTLLAE-----NHEGLLVTGNNLFPRGRSLIEFTGC-------NRCS 266 (410)
T ss_dssp ECSC-----------EESCEEESCEEECC-TTSEEEEEE-----SEESCEEESCEECSCSSEEEEEESC-------BSCE
T ss_pred eccc-----------cccceEecceeeec-CCCCEEEEE-----eCCCCEEECCCcccCcceEEEEEcc-------CCCE
Confidence 8763 68889999999876 666 5553 567888999977 558889998654 2344
Q ss_pred EEceEecCcceeEE
Q 012788 331 ISDAELYNINVAFG 344 (456)
Q Consensus 331 ~~ni~~~~~~~~i~ 344 (456)
|++.++++..+++.
T Consensus 267 i~~N~f~~~~~Gi~ 280 (410)
T 2inu_A 267 VTSNRLQGFYPGML 280 (410)
T ss_dssp EESCEEEESSSCSE
T ss_pred EECCEEecceeEEE
Confidence 45555554444433
|
| >1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 | Back alignment and structure |
|---|
Probab=98.03 E-value=5.9e-05 Score=75.93 Aligned_cols=112 Identities=9% Similarity=0.007 Sum_probs=85.6
Q ss_pred eEEEEeeccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCc-cCEEEEecEEecCC--------
Q 012788 179 LVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSS-DNVCIEDCIIAMGH-------- 249 (456)
Q Consensus 179 ~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s-~nV~I~n~~i~~gD-------- 249 (456)
.|.+ ..++++|+|++|+|+...+|.+.. .+.+|++|++.... ..||.+... .+.+|+||.+....
T Consensus 109 ~i~i-~~~~~~i~gl~I~n~g~~GI~v~g-s~~~i~n~~i~~n~----~~GI~l~~~~s~n~I~nn~i~~N~d~~~~g~~ 182 (400)
T 1ru4_A 109 GFYV-TGDYWYFKGVEVTRAGYQGAYVIG-SHNTFENTAFHHNR----NTGLEINNGGSYNTVINSDAYRNYDPKKNGSM 182 (400)
T ss_dssp SEEE-CSSCEEEESEEEESCSSCSEEECS-SSCEEESCEEESCS----SCSEEECTTCCSCEEESCEEECCCCTTTTTSS
T ss_pred EEEE-ECCeEEEEeEEEEeCCCCcEEEeC-CCcEEEeEEEECCC----ceeEEEEcccCCeEEEceEEEcccCccccCcc
Confidence 3555 688999999999998877888876 78899999999742 349999764 48899999998643
Q ss_pred -ceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECC
Q 012788 250 -DAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDS 310 (456)
Q Consensus 250 -D~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~ 310 (456)
|+++++.. ..++.+|++|+++...+.|+.+. .....++|+||...+.
T Consensus 183 ~dG~~~~~~----------~g~Gn~~~~~~~~~N~ddGidl~----~~~~~v~i~nn~a~~N 230 (400)
T 1ru4_A 183 ADGFGPKQK----------QGPGNRFVGCRAWENSDDGFDLF----DSPQKVVIENSWAFRN 230 (400)
T ss_dssp CCSEEECTT----------CCSCCEEESCEEESCSSCSEECT----TCCSCCEEESCEEEST
T ss_pred cceEEEEec----------ccCCeEEECCEEeecCCCcEEEE----ecCCCEEEEeEEEECC
Confidence 45655542 13788899999987767888875 2334579999998754
|
| >2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00026 Score=69.56 Aligned_cols=107 Identities=14% Similarity=0.116 Sum_probs=67.0
Q ss_pred eeccEEEEeEEEEeCCc--------------------ceEE-eecccceEEEEEEEECCCCCCCCceeeecCccCEEEEe
Q 012788 184 SSENVVVSNLTFLNAPA--------------------YNIH-PVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIED 242 (456)
Q Consensus 184 ~~~nv~I~~v~i~ns~~--------------------~~i~-~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n 242 (456)
.+++++++||+|+|+.. -.+. ...++++.+.+|+|.. ..|.+.... .+..++|
T Consensus 94 ~a~~f~a~nlt~~Nt~~~~~~~~~~~~~~~~~~~~QAvAl~v~v~~d~~~f~~c~f~G-----~QDTLy~~~-gr~~~~~ 167 (342)
T 2nsp_A 94 SAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVG-----YQATLYVSG-GRSFFSD 167 (342)
T ss_dssp CSBSCEEEEEEEEECCCHHHHHHSCTTCTTCCSCCCCCSEEECTTCBSEEEEEEEEEC-----STTCEEECS-SEEEEES
T ss_pred ECCCEEEEeeEEEccccccccccccccCCccccCCceEEEEEeeccCcEEEEeeEEec-----ccceEEECC-CCEEEEc
Confidence 47899999999999751 1232 2467888888888887 356777654 4577888
Q ss_pred cEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCC--C-------CeeEecccccCcEEeEEEEeEEEECC
Q 012788 243 CIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSS--G-------SSVAFGSEMSGGISNVQVEKIHLYDS 310 (456)
Q Consensus 243 ~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~--~-------~gi~igs~~~~~v~nI~v~n~~~~~~ 310 (456)
|+|+..-|-|- | .-..+++||++..-. . .-|.-.+.....-..+.|.||++.+.
T Consensus 168 c~I~G~vDFIF---G-----------~a~a~f~~c~i~~~~~~~~~~~~~~g~ItA~~~~~~~~~G~vf~~c~i~~~ 230 (342)
T 2nsp_A 168 CRISGTVDFIF---G-----------DGTALFNNCDLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRE 230 (342)
T ss_dssp CEEEESEEEEE---E-----------SSEEEEESCEEEECCCTTSCTTSCCEEEEEECCBTTCSCCEEEESCEEEES
T ss_pred CEEEeceEEEe---C-----------CceEEEecCEEEEecCcccccccCceEEEccCCCCCCCCEEEEEcCEEecC
Confidence 88887555442 1 234778888886421 0 11222221112334578888888765
|
| >1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.3e-05 Score=80.69 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=69.3
Q ss_pred eEEeecccceEEEEEEEECCCC---------------CCCCceeeecCccCEEEEecEEecC------------------
Q 012788 202 NIHPVYCSNVHIQNISVHAPPE---------------SPYTVGIVPDSSDNVCIEDCIIAMG------------------ 248 (456)
Q Consensus 202 ~i~~~~~~nv~i~n~~i~~~~~---------------~~n~DGi~~~~s~nV~I~n~~i~~g------------------ 248 (456)
++.+..++||.|+|++|....+ ....|+|.+..++||.|++|.|..+
T Consensus 149 gl~i~~~~NVIIrNl~i~~~~~~~p~~~p~~~~~~~~~~~~DaI~i~~s~nVWIDHcs~s~~~~~d~~~~~~~Gr~~~~~ 228 (416)
T 1vbl_A 149 GFLIKNVDNVIIRNIEFEAPLDYFPEWDPTDGTLGEWNSEYDSISIEGSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQQH 228 (416)
T ss_dssp EEEEESCEEEEEESCEEECCCCSSCEEETTSTTTCEEECCCCSEEEESCEEEEEESCEEECTTCCGGGSCEETTEECCCC
T ss_pred EEEeecCceEEEeCeEEEcCccccccccccccccccccCCCceEEecCCceEEEEccEEecCCCcccccccccCcceeec
Confidence 3444556666666666654321 1356999999999999999999865
Q ss_pred CceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccC----cEEeEEEEeEEEECCc-ceEEE
Q 012788 249 HDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSG----GISNVQVEKIHLYDSL-NGIEF 316 (456)
Q Consensus 249 DD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~----~v~nI~v~n~~~~~~~-~gi~i 316 (456)
|..+.++. .+.+|+|+||+|.+- ..+.-+|+.... +...|++.++.|.+.. +.-++
T Consensus 229 DGl~Di~~-----------~s~~VTISnn~f~~h-~k~~LiG~sd~~~~d~g~~~VT~hhN~f~~~~~R~Pr~ 289 (416)
T 1vbl_A 229 DGALDIKN-----------SSDFITISYNVFTNH-DKVTLIGASDSRMADSGHLRVTLHHNYYKNVTQRLPRV 289 (416)
T ss_dssp CCSEEEES-----------SCEEEEEESCEEEEE-EECCEECSCTTCGGGTTCCCEEEESCEEEEEEECSSEE
T ss_pred ccceeeec-----------CCCcEEEEeeEEcCC-CceeEeCCCCCCcccCCceEEEEECcEecCCccCCccc
Confidence 33344443 389999999999864 556667765321 2347999999997653 34444
|
| >1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00014 Score=72.04 Aligned_cols=147 Identities=14% Similarity=0.163 Sum_probs=95.6
Q ss_pred EEEE-eeccEEEEeEEEEeCC------cceEEeecccceEEEEEEEECCCCCCCCceee---ecCccCEEEEecEEecCC
Q 012788 180 VEFI-SSENVVVSNLTFLNAP------AYNIHPVYCSNVHIQNISVHAPPESPYTVGIV---PDSSDNVCIEDCIIAMGH 249 (456)
Q Consensus 180 i~~~-~~~nv~I~~v~i~ns~------~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~---~~~s~nV~I~n~~i~~gD 249 (456)
|.+. .++||.|++|+|++.. ..+|.+..+++|.|++|++... .|+.. ...+++|+|++|.|....
T Consensus 126 l~i~~~a~NVIIrnl~i~~~~~~~~~~~DaI~i~~s~nvwIDHcs~s~~-----~d~~~~~~~~~s~~vTISnn~f~~~~ 200 (359)
T 1qcx_A 126 LRVVSGAKNVIIQNIAVTDINPKYVWGGDAITVDDSDLVWIDHVTTARI-----GRQHIVLGTSADNRVTISYSLIDGRS 200 (359)
T ss_dssp EEEETTCCCEEEESCEEEEECTTEETSCCSEEEESCCCEEEESCEEEEE-----SSCSEEECSSCCEEEEEESCEEECBC
T ss_pred EEEecCCCCEEEeCcEEEecCCcccccCceeEecCCceEEEEeeEeecc-----CcCceeecccccccEEEECcEecCCc
Confidence 7777 8999999999999853 2578899999999999999864 34432 346899999999998533
Q ss_pred ceEecCC-CCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECC-cceEEEEecCCCCceEE
Q 012788 250 DAISLKS-GWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDS-LNGIEFRTTKGRGGYIR 327 (456)
Q Consensus 250 D~iai~s-g~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~-~~gi~iks~~g~~g~v~ 327 (456)
|- +... |...++....+.+.++++.++.+.+...+.-++. .-..+++.|+.+.+. ..++.... -.
T Consensus 201 ~~-s~~~~G~H~~~~~l~G~sd~vT~~~N~f~~~~~R~Pr~r-----~~~~~hv~NN~~~n~~~~a~~~~~-------~~ 267 (359)
T 1qcx_A 201 DY-SATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKVQ-----GNTLLHAVNNLFHNFDGHAFEIGT-------GG 267 (359)
T ss_dssp SS-BTTSSSBBSCCEEECCSSEEEEEESCEEESBCSCTTEEC-----SSEEEEEESCEEEEEEEEEEEECT-------TE
T ss_pred cc-cccCcccccceeEEecCCCCeehcccEeccCcccCceec-----CCceEEEEccEEECccCeEEecCC-------Cc
Confidence 20 0000 0000111112235789999999875422222222 113588888888764 23433321 25
Q ss_pred eEEEEceEecCcceeEE
Q 012788 328 QIVISDAELYNINVAFG 344 (456)
Q Consensus 328 nI~~~ni~~~~~~~~i~ 344 (456)
.|.+|+..+++...|+.
T Consensus 268 ~i~~e~N~F~~~~~~~~ 284 (359)
T 1qcx_A 268 YVLAEGNVFQDVNVVVE 284 (359)
T ss_dssp EEEEESCEEEEEEEEEC
T ss_pred eEEEEeeEEECCCcccC
Confidence 68889999988888754
|
| >1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=5e-05 Score=74.98 Aligned_cols=146 Identities=13% Similarity=0.015 Sum_probs=96.0
Q ss_pred eEEEEeeccEEEEeEEEEeCC-----cceEEeecccceEEEEEEEECCCCC--------CCCcee-ee-cCccCEEEEec
Q 012788 179 LVEFISSENVVVSNLTFLNAP-----AYNIHPVYCSNVHIQNISVHAPPES--------PYTVGI-VP-DSSDNVCIEDC 243 (456)
Q Consensus 179 ~i~~~~~~nv~I~~v~i~ns~-----~~~i~~~~~~nv~i~n~~i~~~~~~--------~n~DGi-~~-~~s~nV~I~n~ 243 (456)
.|.+..++||.|++++|+..+ ...|.+..+++|.|++|.+....+. ...||. ++ ..+.+|+|++|
T Consensus 104 gl~i~~~~NVIIrnl~i~~~~~~~~~~DaI~i~~s~nVWIDH~s~s~~~~~~~g~~~~~~~~DGl~di~~~s~~VTISnn 183 (353)
T 1air_A 104 GIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYN 183 (353)
T ss_dssp EEEEESCCSEEEESCEEESCSCGGGTCCSEEEESCCSEEEESCEEECCSCCCTTCGGGCCSSCCSEEEESSCCEEEEESC
T ss_pred eEEEeccCcEEEeccEEEeCCCCCCCCCeEEeeCCCcEEEEeeEEecCCcccccccccccccccceeeecccCcEEEEee
Confidence 477889999999999999754 3578999999999999999864221 112554 55 36899999999
Q ss_pred EEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCc-ceEEEEecCCC
Q 012788 244 IIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSL-NGIEFRTTKGR 322 (456)
Q Consensus 244 ~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~-~gi~iks~~g~ 322 (456)
.|...+-+.-+++. +.+. ..+|++.++.+.+...+.-++.. -.+++.|+.+.+.. .++....
T Consensus 184 ~f~~h~k~~LiG~s-d~~~------g~~vT~hhN~f~~~~~R~Pr~r~------G~~Hv~NN~~~n~~~~~~~~~~---- 246 (353)
T 1air_A 184 YIHGVKKVGLDGSS-SSDT------GRNITYHHNYYNDVNARLPLQRG------GLVHAYNNLYTNITGSGLNVRQ---- 246 (353)
T ss_dssp EEEEEEECCEESSS-TTCC------CCEEEEESCEEEEEEECSCEEES------SEEEEESCEEEEESSCSEEEET----
T ss_pred EEcCCCceeEECCC-cCCC------CceEEEEceEEcCCcCCCCCCcC------ceEEEEccEEECCCCceeccCC----
Confidence 99964433333332 1111 15889988888653122223321 14778888887643 4544321
Q ss_pred CceEEeEEEEceEecCcceeEE
Q 012788 323 GGYIRQIVISDAELYNINVAFG 344 (456)
Q Consensus 323 ~g~v~nI~~~ni~~~~~~~~i~ 344 (456)
+ ..|.+|+..+++.+.|+.
T Consensus 247 ~---~~i~~e~N~F~~~~~p~~ 265 (353)
T 1air_A 247 N---GQALIENNWFEKAINPVT 265 (353)
T ss_dssp T---CEEEEESCEEEEEESSEE
T ss_pred C---cEEEEEceEEECCCCceE
Confidence 1 357778887777777754
|
| >1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00015 Score=71.61 Aligned_cols=171 Identities=16% Similarity=0.213 Sum_probs=106.1
Q ss_pred eeEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEE-eeccEEEEeEEEEeC------CcceEEeecccceEEEEEE
Q 012788 145 RDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFI-SSENVVVSNLTFLNA------PAYNIHPVYCSNVHIQNIS 217 (456)
Q Consensus 145 ~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~-~~~nv~I~~v~i~ns------~~~~i~~~~~~nv~i~n~~ 217 (456)
..+.|.. +=||.|+|..- .-....|.+. .++||.|++|+|++. ...+|.+..+++|.|++|+
T Consensus 102 ~~l~v~s-nkTI~G~G~~~----------~i~G~gl~i~~~a~NVIIrnL~i~~~~~~~~~g~DaI~i~~s~nVwIDHcs 170 (359)
T 1idk_A 102 LGITVTS-NKSLIGEGSSG----------AIKGKGLRIVSGAENIIIQNIAVTDINPKYVWGGDAITLDDCDLVWIDHVT 170 (359)
T ss_dssp SCEEECS-SEEEEECTTTC----------EEESCCEEECTTCEEEEEESCEEEEECTTEETSCCSEEECSCEEEEEESCE
T ss_pred ceEEeCC-CceEEEecCCe----------EEecceEEEecCCCcEEEeCeEEEcccccccccCCceeecCCCcEEEEeeE
Confidence 3466644 57999987421 0112348887 899999999999983 2357889999999999999
Q ss_pred EECCCCCCCCceee---ecCccCEEEEecEEecCCceEecCC-CCCccccccCCCcccEEEEEEEEecCCCCeeEecccc
Q 012788 218 VHAPPESPYTVGIV---PDSSDNVCIEDCIIAMGHDAISLKS-GWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEM 293 (456)
Q Consensus 218 i~~~~~~~n~DGi~---~~~s~nV~I~n~~i~~gDD~iai~s-g~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~ 293 (456)
+... .|+.. ...+++|+|++|.|...++- +... |...++....+.+.++++.++.+.+...+.-++..
T Consensus 171 ~s~~-----~d~~~~~g~~~s~~VTISnn~f~~~~~~-s~~~~G~h~~~~~L~G~sd~vT~hhN~f~~~~~R~Pr~r~-- 242 (359)
T 1idk_A 171 TARI-----GRQHYVLGTSADNRVSLTNNYIDGVSDY-SATCDGYHYWAIYLDGDADLVTMKGNYIYHTSGRSPKVQD-- 242 (359)
T ss_dssp EEEE-----SSCSEEECCCTTCEEEEESCEEECBCSC-BTTSSSBBSCCEEECCSSCEEEEESCEEESBCSCTTEECT--
T ss_pred eecC-----CCCcEEecccCcceEEEECcEecCCccc-ccccCccccceEEEEecCCCeEEEceEeecCcccCccccC--
Confidence 9863 34443 45688999999999853321 1000 00000111222357999999999864233223221
Q ss_pred cCcEEeEEEEeEEEECC-cceEEEEecCCCCceEEeEEEEceEecCcceeEE
Q 012788 294 SGGISNVQVEKIHLYDS-LNGIEFRTTKGRGGYIRQIVISDAELYNINVAFG 344 (456)
Q Consensus 294 ~~~v~nI~v~n~~~~~~-~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~~i~ 344 (456)
-+.+++.|+.+.+. .+++.+.. + ..+.+|+..+++.+.|+.
T Consensus 243 ---g~~~hv~NN~~~n~~~~~i~~~~-----~--~~i~~e~N~F~~~~~p~~ 284 (359)
T 1idk_A 243 ---NTLLHAVNNYWYDISGHAFEIGE-----G--GYVLAEGNVFQNVDTVLE 284 (359)
T ss_dssp ---TCEEEEESCEEEEEEEEEEEECT-----T--CEEEEESCEEEEEEEEEE
T ss_pred ---CceEEEECCEEecccceEEeccC-----C--cEEEEEccEEECCCCcee
Confidence 13578888888764 24444321 1 457777777777666644
|
| >2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=2.6e-05 Score=78.16 Aligned_cols=96 Identities=17% Similarity=0.224 Sum_probs=66.9
Q ss_pred eEEeecccceEEEEEEEECCCC---------------CCCCceeeecCccCEEEEecEEecC------------------
Q 012788 202 NIHPVYCSNVHIQNISVHAPPE---------------SPYTVGIVPDSSDNVCIEDCIIAMG------------------ 248 (456)
Q Consensus 202 ~i~~~~~~nv~i~n~~i~~~~~---------------~~n~DGi~~~~s~nV~I~n~~i~~g------------------ 248 (456)
++.+.. +||.|+|++|+...+ ....|+|.+..++||.|++|.|..+
T Consensus 144 gl~i~~-~NVIIrnl~i~~~~~~~p~~~p~~~~~~~~~~~~DaI~i~~s~nVWIDHcs~s~~~~~d~~~~~~~G~~~~~~ 222 (399)
T 2o04_A 144 NFQIKS-DNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHH 222 (399)
T ss_dssp EEEECS-EEEEEESCEEECCCCSSCEEETTSSTTCEEECCCCSEEEESCEEEEEESCEEECTTCCGGGSCEETTEECCCC
T ss_pred EEEeeC-CCEEEeCeEEecCccccccccccccccccccCCCCeEEecCCCcEEEEeeeeecCCCccccccccccceeecc
Confidence 444555 667777777765321 1356999999999999999999865
Q ss_pred CceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccC----cEEeEEEEeEEEECC
Q 012788 249 HDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSG----GISNVQVEKIHLYDS 310 (456)
Q Consensus 249 DD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~----~v~nI~v~n~~~~~~ 310 (456)
|..+.++. .+.+|+|+||+|.+- ..+.-||+.... +..+|++.++.|.+.
T Consensus 223 Dgl~Di~~-----------~s~~VTISnn~f~~h-~k~~LiG~sd~~~~d~g~~~vT~h~N~f~~~ 276 (399)
T 2o04_A 223 DGQTDASN-----------GANYITMSYNYYHDH-DKSSIFGSSDSKTSDDGKLKITLHHNRYKNI 276 (399)
T ss_dssp CCSEEEET-----------TCEEEEEESCEEEEE-EECCEESCCTTCGGGTTCCCEEEESCEEEEE
T ss_pred ccceeeec-----------cCCcEEEEeeEEcCC-CceeEeCCCCCCccccCceeEEEECcEecCC
Confidence 33344443 389999999999864 556667764321 235799999998765
|
| >1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A | Back alignment and structure |
|---|
Probab=97.84 E-value=5e-05 Score=75.08 Aligned_cols=93 Identities=20% Similarity=0.261 Sum_probs=63.9
Q ss_pred ecccceEEEEEEEECCCC-----------CCCCceeeecC-ccCEEEEecEEecC------------------CceEecC
Q 012788 206 VYCSNVHIQNISVHAPPE-----------SPYTVGIVPDS-SDNVCIEDCIIAMG------------------HDAISLK 255 (456)
Q Consensus 206 ~~~~nv~i~n~~i~~~~~-----------~~n~DGi~~~~-s~nV~I~n~~i~~g------------------DD~iai~ 255 (456)
..++||.|+|++|....+ ....|+|.+.. ++||.|++|.|..+ |..+.++
T Consensus 111 ~~~~NVIIrNl~i~~~~d~~p~~~~~~g~~~~~DaI~i~~~s~nVWIDHcs~s~~~~~~~~~~~~~G~~~~~~DgllDi~ 190 (361)
T 1pe9_A 111 DGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIK 190 (361)
T ss_dssp GTCEEEEEESCEEECCCCSSCEEETTTEEECCCCSEEEETTCEEEEEESCEEECTTSCGGGCCEETTEECCCCCCSEEEC
T ss_pred CCCceEEEeCeEEEcCcccccccccccCcccCCceEEeecCCceEEEEccEeecccccccccccccCcceeeccceeeee
Confidence 345555555555554311 02479999998 99999999999864 4445555
Q ss_pred CCCCccccccCCCcccEEEEEEEEecCCCCeeEeccccc-----CcEEeEEEEeEEEECC
Q 012788 256 SGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMS-----GGISNVQVEKIHLYDS 310 (456)
Q Consensus 256 sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~-----~~v~nI~v~n~~~~~~ 310 (456)
.+ +.+|+|++|+|..- ..++-+|+... .+-.+|++.++.|.+.
T Consensus 191 ~~-----------s~~VTiS~n~f~~h-~k~~LiG~sd~~~~~d~g~~~vT~hhN~f~~~ 238 (361)
T 1pe9_A 191 RG-----------SDYVTISNSLIDQH-DKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRV 238 (361)
T ss_dssp TT-----------CEEEEEESCEEEEE-EECEEESCCTTCHHHHTTCCEEEEESCEEEEE
T ss_pred cC-----------CCcEEEEeeEEcCC-CceeEecCCCCCcccccCcceEEEECeEEcCc
Confidence 43 89999999999864 45666665422 1234799999999764
|
| >2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00042 Score=69.35 Aligned_cols=122 Identities=13% Similarity=0.094 Sum_probs=80.1
Q ss_pred eEEEEeeccEEEEeEEEEeC-------------------CcceEEeecccceEEEEEEEECCCCC------------CCC
Q 012788 179 LVEFISSENVVVSNLTFLNA-------------------PAYNIHPVYCSNVHIQNISVHAPPES------------PYT 227 (456)
Q Consensus 179 ~i~~~~~~nv~I~~v~i~ns-------------------~~~~i~~~~~~nv~i~n~~i~~~~~~------------~n~ 227 (456)
.|.+.. +||.|++|+|++. ....|.+..+++|.|++|++....+. .-.
T Consensus 144 gl~i~~-~NVIIrnl~i~~~~~~~p~~~p~~~~~~~~~~~~DaI~i~~s~nVWIDHcs~s~~~~~d~~~~~~~G~~~~~~ 222 (399)
T 2o04_A 144 NFQIKS-DNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHH 222 (399)
T ss_dssp EEEECS-EEEEEESCEEECCCCSSCEEETTSSTTCEEECCCCSEEEESCEEEEEESCEEECTTCCGGGSCEETTEECCCC
T ss_pred EEEeeC-CCEEEeCeEEecCccccccccccccccccccCCCCeEEecCCCcEEEEeeeeecCCCccccccccccceeecc
Confidence 477777 9999999999863 23568899999999999999864210 114
Q ss_pred cee-eec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeE
Q 012788 228 VGI-VPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKI 305 (456)
Q Consensus 228 DGi-~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~ 305 (456)
||. ++. .+++|+|.+|+|...+-+.-+.+. +.+. ......+|++.++.+.+...+.-++.. + .+++.|+
T Consensus 223 Dgl~Di~~~s~~VTISnn~f~~h~k~~LiG~s-d~~~--~d~g~~~vT~h~N~f~~~~~R~Pr~R~----G--~~Hv~NN 293 (399)
T 2o04_A 223 DGQTDASNGANYITMSYNYYHDHDKSSIFGSS-DSKT--SDDGKLKITLHHNRYKNIVQAAPRVRF----G--QVHVYNN 293 (399)
T ss_dssp CCSEEEETTCEEEEEESCEEEEEEECCEESCC-TTCG--GGTTCCCEEEESCEEEEEEECTTEESS----C--EEEEESC
T ss_pred ccceeeeccCCcEEEEeeEEcCCCceeEeCCC-CCCc--cccCceeEEEECcEecCCcccCCCccc----c--eEEEEcc
Confidence 654 454 689999999999975544444432 1111 011134899998888653223333321 1 3889999
Q ss_pred EEECC
Q 012788 306 HLYDS 310 (456)
Q Consensus 306 ~~~~~ 310 (456)
.+.+.
T Consensus 294 ~~~n~ 298 (399)
T 2o04_A 294 YYEGS 298 (399)
T ss_dssp EEECC
T ss_pred eEECC
Confidence 99765
|
| >3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0025 Score=61.96 Aligned_cols=160 Identities=13% Similarity=0.204 Sum_probs=102.6
Q ss_pred eeeeEEEeccC--ceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEEeCC---cceEEeec-ccceEEEEE
Q 012788 143 MLRDVVVTGDN--GTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAP---AYNIHPVY-CSNVHIQNI 216 (456)
Q Consensus 143 ~~~ni~I~G~~--GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~---~~~i~~~~-~~nv~i~n~ 216 (456)
..+|++|.|.+ .+|+|. .|.+.+++||.|++++|++.. ...|.+.. +++|.|++|
T Consensus 77 ~~sn~TI~G~g~~~~i~G~-------------------gl~i~~a~NVIIrNl~i~~~~~~~~DaI~i~~~s~nVWIDH~ 137 (326)
T 3vmv_A 77 EIKNISIIGVGTNGEFDGI-------------------GIRLSNAHNIIIQNVSIHHVREGEGTAIEVTDDSKNVWIDHN 137 (326)
T ss_dssp CEEEEEEEECTTCCEEESC-------------------CEEEESEEEEEEESCEEECCCSTTSCSEEEETTCEEEEEESC
T ss_pred CCCCeEEEecCCCeEEeCc-------------------EEEEEecceEEEECeEEEcCCCCCCCeEEEecCCCcEEEEee
Confidence 35778888861 245543 277778999999999999864 45799986 999999999
Q ss_pred EEECCC----CCCCCcee-eec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEec
Q 012788 217 SVHAPP----ESPYTVGI-VPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFG 290 (456)
Q Consensus 217 ~i~~~~----~~~n~DGi-~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~ig 290 (456)
++.... +..-.||. ++. .+.+|+|.+|.|..-+-+.-+.+. +.+.. .-.+|++.++.+.+...+.-++.
T Consensus 138 s~s~~~~g~~~~~~~Dgl~di~~~s~~VTISnn~f~~h~k~~LiG~s-d~~~~----~~~~vT~~~N~f~~~~~R~Pr~r 212 (326)
T 3vmv_A 138 EFYSEFPGNGDSDYYDGLVDMKRNAEYITVSWNKFENHWKTMLVGHT-DNASL----APDKITYHHNYFNNLNSRVPLIR 212 (326)
T ss_dssp EEECCSSTTSCTTSSCCSEEECTTCEEEEEESCEEEEEEECEEECSS-SCGGG----CCEEEEEESCEEEEEEECTTEEE
T ss_pred EEeccccCCcCccccCcceEecCCCceEEEEceEEecCceEEEECCC-CCCcc----cCccEEEEeeEecCCcCcCCccc
Confidence 998532 11223554 553 488999999999975544444442 11110 02478888888865312222332
Q ss_pred ccccCcEEeEEEEeEEEECC-cceEEEEecCCCCceEEeEEEEceEecCc
Q 012788 291 SEMSGGISNVQVEKIHLYDS-LNGIEFRTTKGRGGYIRQIVISDAELYNI 339 (456)
Q Consensus 291 s~~~~~v~nI~v~n~~~~~~-~~gi~iks~~g~~g~v~nI~~~ni~~~~~ 339 (456)
. + .+++.|+.+.+. ..++.... + ..|.+|+..+++.
T Consensus 213 ~----G--~~Hv~NN~~~n~~~~~~~~~~--~-----a~v~~e~N~F~~~ 249 (326)
T 3vmv_A 213 Y----A--DVHMFNNYFKDINDTAINSRV--G-----ARVFVENNYFDNV 249 (326)
T ss_dssp S----C--EEEEESCEEEEESSCSEEEET--T-----CEEEEESCEEEEE
T ss_pred C----C--cEEEEccEEECCCceEEeecC--C-----cEEEEEceEEECC
Confidence 1 1 578888888865 35655432 1 4566666666654
|
| >1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0011 Score=65.46 Aligned_cols=122 Identities=12% Similarity=0.134 Sum_probs=75.7
Q ss_pred EEE---EeeccEEEEeEEEEeCC---------------cceEEeec-ccceEEEEEEEECCCCC------------CCCc
Q 012788 180 VEF---ISSENVVVSNLTFLNAP---------------AYNIHPVY-CSNVHIQNISVHAPPES------------PYTV 228 (456)
Q Consensus 180 i~~---~~~~nv~I~~v~i~ns~---------------~~~i~~~~-~~nv~i~n~~i~~~~~~------------~n~D 228 (456)
|.+ .+++||.|++|+|++.. ...|.+.. +++|.|++|++....+. .-.|
T Consensus 105 l~i~~~~~~~NVIIrNl~i~~~~d~~p~~~~~~g~~~~~DaI~i~~~s~nVWIDHcs~s~~~~~~~~~~~~~G~~~~~~D 184 (361)
T 1pe9_A 105 LIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHD 184 (361)
T ss_dssp EEEEGGGTCEEEEEESCEEECCCCSSCEEETTTEEECCCCSEEEETTCEEEEEESCEEECTTSCGGGCCEETTEECCCCC
T ss_pred EEEecCCCCceEEEeCeEEEcCcccccccccccCcccCCceEEeecCCceEEEEccEeecccccccccccccCcceeecc
Confidence 666 57888888888888531 34788888 99999999999864210 1135
Q ss_pred e-eeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEE
Q 012788 229 G-IVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIH 306 (456)
Q Consensus 229 G-i~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~ 306 (456)
| +++. .+++|+|.+|+|..-+-+.-+.+. +.+.. ......+|++.++.|.+...+.=++. .+ .+++.|+.
T Consensus 185 gllDi~~~s~~VTiS~n~f~~h~k~~LiG~s-d~~~~-~d~g~~~vT~hhN~f~~~~~R~Pr~R----~G--~~Hv~NN~ 256 (361)
T 1pe9_A 185 GALDIKRGSDYVTISNSLIDQHDKTMLIGHS-DSNGS-QDKGKLHVTLFNNVFNRVTERAPRVR----YG--SIHSFNNV 256 (361)
T ss_dssp CSEEECTTCEEEEEESCEEEEEEECEEESCC-TTCHH-HHTTCCEEEEESCEEEEEEECSSEES----SC--EEEEESCE
T ss_pred ceeeeecCCCcEEEEeeEEcCCCceeEecCC-CCCcc-cccCcceEEEECeEEcCccccCcccc----cc--eEEEEcce
Confidence 5 4554 589999999999875444444432 11100 00012468888888864312222222 11 37888888
Q ss_pred EEC
Q 012788 307 LYD 309 (456)
Q Consensus 307 ~~~ 309 (456)
+.+
T Consensus 257 ~~~ 259 (361)
T 1pe9_A 257 FKG 259 (361)
T ss_dssp EEE
T ss_pred Eec
Confidence 864
|
| >1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0025 Score=62.87 Aligned_cols=124 Identities=13% Similarity=0.096 Sum_probs=82.9
Q ss_pred eEEEEeeccEEEEeEEEEeCC---------------cceEEeecccceEEEEEEEECCCC---------CC---CCce-e
Q 012788 179 LVEFISSENVVVSNLTFLNAP---------------AYNIHPVYCSNVHIQNISVHAPPE---------SP---YTVG-I 230 (456)
Q Consensus 179 ~i~~~~~~nv~I~~v~i~ns~---------------~~~i~~~~~~nv~i~n~~i~~~~~---------~~---n~DG-i 230 (456)
.|.+..++||.|++|+|++.. ...|.+..+++|.|++|++....+ +. -.|| +
T Consensus 97 gl~i~~~~NVIIrnl~i~~~~~~~p~~~~~~g~~~~~DaI~i~~s~nVWIDH~s~s~~~~~d~~~~~~~G~~~~~~Dgl~ 176 (355)
T 1pcl_A 97 SLVIKGVKNVILRNLYIETPVDVAPHYESGDGWNAEWDAAVIDNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGAL 176 (355)
T ss_pred EEEEecCCeEEEeeeEEEcCcccccccccccCccccCceEEecCCCcEEEEeeEEeccccCccccccccCccccccccce
Confidence 377778999999999999641 347889999999999999986421 11 1466 3
Q ss_pred eec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEEC
Q 012788 231 VPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYD 309 (456)
Q Consensus 231 ~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~ 309 (456)
++. .+++|+|.+|+|...+-+.-+.+. +.+.. ......+|++.+|.|.+...+.-++. .+ .+++.|+.+.+
T Consensus 177 Di~~~s~~VTiS~n~f~~h~k~~LiG~s-d~~~~-~d~g~~~vT~hhN~f~~~~~R~PrvR----~G--~~Hv~NN~~~~ 248 (355)
T 1pcl_A 177 DIKKGSDYVTISYSRFELHDKTILIGHS-DSNGS-QDSGKLRVTFHNNVFDRVTERAPRVR----FG--SIHAYNNVYLG 248 (355)
T ss_pred eeecCCCcEEEEeeEEcCCCceEEeCCC-CCCcc-cccCcceEEEECcEEeCCcccCCcee----cc--eEEEEcceEEc
Confidence 454 689999999999986655555442 11110 01113479999999976423333332 11 27888998875
Q ss_pred C
Q 012788 310 S 310 (456)
Q Consensus 310 ~ 310 (456)
.
T Consensus 249 ~ 249 (355)
T 1pcl_A 249 D 249 (355)
T ss_pred c
Confidence 4
|
| >1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0008 Score=67.67 Aligned_cols=123 Identities=14% Similarity=0.056 Sum_probs=81.6
Q ss_pred eEEEEeeccEEEEeEEEEeC-------------------CcceEEeecccceEEEEEEEECCCC------------CCCC
Q 012788 179 LVEFISSENVVVSNLTFLNA-------------------PAYNIHPVYCSNVHIQNISVHAPPE------------SPYT 227 (456)
Q Consensus 179 ~i~~~~~~nv~I~~v~i~ns-------------------~~~~i~~~~~~nv~i~n~~i~~~~~------------~~n~ 227 (456)
.|.+..++||.|++|+|++. ....|.+..+++|.|++|++....+ ..-.
T Consensus 149 gl~i~~~~NVIIrNl~i~~~~~~~p~~~p~~~~~~~~~~~~DaI~i~~s~nVWIDHcs~s~~~~~d~~~~~~~Gr~~~~~ 228 (416)
T 1vbl_A 149 GFLIKNVDNVIIRNIEFEAPLDYFPEWDPTDGTLGEWNSEYDSISIEGSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQQH 228 (416)
T ss_dssp EEEEESCEEEEEESCEEECCCCSSCEEETTSTTTCEEECCCCSEEEESCEEEEEESCEEECTTCCGGGSCEETTEECCCC
T ss_pred EEEeecCceEEEeCeEEEcCccccccccccccccccccCCCceEEecCCceEEEEccEEecCCCcccccccccCcceeec
Confidence 47888999999999999864 2356889999999999999986421 0114
Q ss_pred ce-eeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeE
Q 012788 228 VG-IVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKI 305 (456)
Q Consensus 228 DG-i~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~ 305 (456)
|| +++. .+++|+|.+|+|...+-+.-+.+. +.+. ......+|++.++.|.+...+.-++.. + .+++.|+
T Consensus 229 DGl~Di~~~s~~VTISnn~f~~h~k~~LiG~s-d~~~--~d~g~~~VT~hhN~f~~~~~R~Pr~R~----G--~~Hv~NN 299 (416)
T 1vbl_A 229 DGALDIKNSSDFITISYNVFTNHDKVTLIGAS-DSRM--ADSGHLRVTLHHNYYKNVTQRLPRVRF----G--QVHIYNN 299 (416)
T ss_dssp CCSEEEESSCEEEEEESCEEEEEEECCEECSC-TTCG--GGTTCCCEEEESCEEEEEEECSSEESS----C--EEEEESC
T ss_pred ccceeeecCCCcEEEEeeEEcCCCceeEeCCC-CCCc--ccCCceEEEEECcEecCCccCCccccc----c--eEEEEcc
Confidence 65 3444 689999999999975544444432 1111 011124699999988653223333321 1 3889999
Q ss_pred EEECC
Q 012788 306 HLYDS 310 (456)
Q Consensus 306 ~~~~~ 310 (456)
.+.+.
T Consensus 300 ~~~n~ 304 (416)
T 1vbl_A 300 YYEFS 304 (416)
T ss_dssp EEEEC
T ss_pred eEECC
Confidence 99754
|
| >3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.024 Score=56.52 Aligned_cols=139 Identities=14% Similarity=0.103 Sum_probs=81.0
Q ss_pred EEEeeccEEEEeEEEEeCCcc----------eEEeecccceEEEEEEEECCCCCCCCceeee-----------cCccCEE
Q 012788 181 EFISSENVVVSNLTFLNAPAY----------NIHPVYCSNVHIQNISVHAPPESPYTVGIVP-----------DSSDNVC 239 (456)
Q Consensus 181 ~~~~~~nv~I~~v~i~ns~~~----------~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~-----------~~s~nV~ 239 (456)
.....+++.++||+|+|.... .+. ...+...+.+|++...- |-+.. +......
T Consensus 196 ~~V~g~~F~a~niTf~Ntag~~~~~~~~QAVAL~-v~gDr~~fy~C~f~G~Q-----DTLy~~~~~~~~~~~~d~~gRqy 269 (422)
T 3grh_A 196 FWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALR-TDGDQVQINNVNILGRQ-----NTFFVTNSGVQNRLETNRQPRTL 269 (422)
T ss_dssp EEECCTTCEEEEEEEEETTGGGSCSSCCCCCSEE-ECCSSEEEEEEEEECST-----TCEEECCCCTTCSCCSSCCCEEE
T ss_pred EEEECCCEEEEeeEEEeCCCCCCCCCCCceEEEE-ecCCcEEEEeeEEEeec-----ceeeeccccccccccccccccEE
Confidence 344578999999999997432 233 35678888899888743 33333 2244577
Q ss_pred EEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCC-----CCeeEecccccCcEEeEEEEeEEEECCc-ce
Q 012788 240 IEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSS-----GSSVAFGSEMSGGISNVQVEKIHLYDSL-NG 313 (456)
Q Consensus 240 I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~-----~~gi~igs~~~~~v~nI~v~n~~~~~~~-~g 313 (456)
+++|+|...=|-|- | .-..++++|++..-. ..-|.-.+.....-..+.|.||+|.... ..
T Consensus 270 y~~CyIeGtVDFIF---G-----------~a~AvFe~C~I~s~~~~~~~~g~ITA~~t~~~~~~Gfvf~nC~ita~~~~~ 335 (422)
T 3grh_A 270 VTNSYIEGDVDIVS---G-----------RGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNAFGDGV 335 (422)
T ss_dssp EESCEEEESEEEEE---E-----------SSEEEEESCEEEECCSSCSSCCEEEEECCBTTCCCCEEEESCEEEECSSSC
T ss_pred EEecEEeccccEEc---c-----------CceEEEEeeEEEEecCCCCCceEEEecCCCCCCCCEEEEECCEEEeCCCCC
Confidence 88888887555442 1 346778888886421 1122223222233456788888887432 12
Q ss_pred EEE-EecCCCCceEEeEEEEceEecCc
Q 012788 314 IEF-RTTKGRGGYIRQIVISDAELYNI 339 (456)
Q Consensus 314 i~i-ks~~g~~g~v~nI~~~ni~~~~~ 339 (456)
..+ ..|...+-....|+|.|..|.+.
T Consensus 336 ~yLGRPW~~ysrt~~qVVf~~s~l~~~ 362 (422)
T 3grh_A 336 AQLGRSLDVDANTNGQVVIRDSAINEG 362 (422)
T ss_dssp BEEEEEECCSTTBCCEEEEESCEECTT
T ss_pred EEcCCCCCCcCCcCccEEEEeCcccCc
Confidence 333 23432221233577777777764
|
| >2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00052 Score=68.20 Aligned_cols=133 Identities=8% Similarity=-0.065 Sum_probs=85.5
Q ss_pred EEEEeeccEEEEeEEEEeC--Ccc--------eEEeecccceEEEEEEEE--CCCCCCCCceeeecCccCEEEE-ecEEe
Q 012788 180 VEFISSENVVVSNLTFLNA--PAY--------NIHPVYCSNVHIQNISVH--APPESPYTVGIVPDSSDNVCIE-DCIIA 246 (456)
Q Consensus 180 i~~~~~~nv~I~~v~i~ns--~~~--------~i~~~~~~nv~i~n~~i~--~~~~~~n~DGi~~~~s~nV~I~-n~~i~ 246 (456)
+.+.+.+|+.|.|--..|. ..| ......+++|.|++|+.. ... ..-+++..|++++++ +..|.
T Consensus 140 I~~~~VeNIaITG~GTIDG~g~n~t~e~~~~Rq~~~~~fdnV~Vn~Vt~~v~~Sg----~WTIhPi~Cqnvt~r~gL~f~ 215 (514)
T 2vbk_A 140 TIGRYLRNIRVTGNNTCNGIDTNITAEDSVIRQVYGWVFDNVMVNEVETAYLMQG----LWHSKFIACQAGTCRVGLHFL 215 (514)
T ss_dssp CSCEEEESCEEECCSSSEEEEESCCTTCSSCCCEESEEEESCEEEEEEEEEEEES----EEEEEEESCEEEEEEEEEEEE
T ss_pred ccccCceEEEEECCCeEeCCCCCccccceeeeccceEEeeeEEEEeEEEeEeccC----cEEEeEeccCceecccCcccc
Confidence 4455677777776321111 011 123335789999999653 211 234777788888876 43332
Q ss_pred cCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccc-------cCcEEeEEEEeEEEECCcceEEEEec
Q 012788 247 MGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEM-------SGGISNVQVEKIHLYDSLNGIEFRTT 319 (456)
Q Consensus 247 ~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~-------~~~v~nI~v~n~~~~~~~~gi~iks~ 319 (456)
.+ ++||.|.||+|... +++|+|+|.. ....+||. ..++-|.+.
T Consensus 216 --------eS------------CrNV~IsnC~FsVG-DdciaiksGk~~~~~~~~~~se~~~---------hgav~igSE 265 (514)
T 2vbk_A 216 --------GQ------------CVSVSVSSCHFSRG-NYSADESFGIRIQPQTYAWSSEAVR---------SEAIILDSE 265 (514)
T ss_dssp --------SC------------CEEEEEESCEEECT-TSCCTTCEEEEEECBCCTTTSSCBC---------CEEEEEESS
T ss_pred --------CC------------CCeEEEeccEEecC-cceeeeecCceecccccCCcchhcc---------cccEEECch
Confidence 12 99999999999987 9999998862 12345554 456777765
Q ss_pred -CCCCceEEe-EEEEceEecCcceeEEEeccCCC
Q 012788 320 -KGRGGYIRQ-IVISDAELYNINVAFGACGNCGS 351 (456)
Q Consensus 320 -~g~~g~v~n-I~~~ni~~~~~~~~i~i~~~y~~ 351 (456)
. .|.|+| |+++++.+.+..+ ++..|+.
T Consensus 266 ~m--~~Gvk~~v~v~~Clf~~td~---~~~~~~~ 294 (514)
T 2vbk_A 266 TM--CIGFKNAVYVHDCLDLHMEQ---LDLDYCG 294 (514)
T ss_dssp EE--EESCSEEEEESCCEEEEEES---EEEEEES
T ss_pred hh--cccccccEEEEeeeccCCcc---ccccccC
Confidence 3 567889 9999999987654 2445664
|
| >1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.062 Score=55.36 Aligned_cols=139 Identities=6% Similarity=-0.007 Sum_probs=96.9
Q ss_pred eeccEEEEeEEEEeC-CcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCC-----ceEecCCC
Q 012788 184 SSENVVVSNLTFLNA-PAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGH-----DAISLKSG 257 (456)
Q Consensus 184 ~~~nv~I~~v~i~ns-~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gD-----D~iai~sg 257 (456)
...+.+|++-.+.+. ....+....+.+.+|++.++... ..||.+..+++.+|++.+|.... .||.+..
T Consensus 226 ~s~~~~VenN~f~~~~gg~aim~skS~~n~i~~N~~~~~-----~ggi~l~~~~~s~I~~N~f~gN~~~~~~~Gi~i~~- 299 (506)
T 1dbg_A 226 DIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNC-----QGTMNFRHGDHQVAINNFYIGNDQRFGYGGMFVWG- 299 (506)
T ss_dssp CBCCCEEESCEEEEECSSSEEEEEESBSCEEESCEEESC-----SSEEEEEECSSCEEESCEEEECSSSSCBCCEEECS-
T ss_pred ccCCcEEECCEEEeccCcEEEEEEecCCEEEECCEEEcc-----cCcEEEeecCccEEECCEEECCcCccCceEEEEEC-
Confidence 457888888887764 34556666777789999999863 45898888888899999987643 4565532
Q ss_pred CCccccccCCCcccEEEEEEEEecCCC------CeeEecccc----cCcEEeEEEEeEEEECCcc-eEEEE---------
Q 012788 258 WDEYGIAYGRPTTDVHIRRVLLQSSSG------SSVAFGSEM----SGGISNVQVEKIHLYDSLN-GIEFR--------- 317 (456)
Q Consensus 258 ~~~~g~~~~~~s~ni~I~n~~~~~~~~------~gi~igs~~----~~~v~nI~v~n~~~~~~~~-gi~ik--------- 317 (456)
. +.+|+|++|.+..+ .||.+.... ...+++++|++++|.+... ||.+.
T Consensus 300 -----------~-~~~I~nN~f~~~~g~~~~~~~GI~i~~G~~~~~~~~~~~~~I~~Ntfi~n~~~gI~~~~~~~~~~~~ 367 (506)
T 1dbg_A 300 -----------S-RHVIACNYFELSETIKSRGNAALYLNPGAMASEHALAFDMLIANNAFINVNGYAIHFNPLDERRKEY 367 (506)
T ss_dssp -----------B-SCEEESCEEEESSBCGGGTSEEEEECCBCTTSTTCCCBSEEEESCEEESCSSEEEESSTTHHHHHHH
T ss_pred -----------C-CCEEECCEEECCcCccccccccEEEecCCCccccccccCcEEECCEEECCccccEEEcccccccccc
Confidence 3 44999999987521 277775321 2346899999999999987 99998
Q ss_pred -ecC-CCCceEEeEEEEceEecCcc
Q 012788 318 -TTK-GRGGYIRQIVISDAELYNIN 340 (456)
Q Consensus 318 -s~~-g~~g~v~nI~~~ni~~~~~~ 340 (456)
.-. .....=.|++|.|..+.+..
T Consensus 368 ~~g~~~~~~~p~~~~~~nN~i~~~~ 392 (506)
T 1dbg_A 368 CAANRLKFETPHQLMLKGNLFFKDK 392 (506)
T ss_dssp HHHTTCCCBCCCSEEEESCEEECCS
T ss_pred cccccccccCCCcEEEEccEEEcCC
Confidence 111 00122367888887776643
|
| >3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.31 Score=42.85 Aligned_cols=108 Identities=18% Similarity=0.235 Sum_probs=60.3
Q ss_pred ceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEec-CCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeE
Q 012788 210 NVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAM-GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVA 288 (456)
Q Consensus 210 nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~ 288 (456)
+.+++|+.|-.+ ..||||.. -+-+|+|+.++. +.|++.++. +..++|.+.-..+..+--|.
T Consensus 53 GaTLkNvIIG~~----~~dGIHC~--G~ctl~NVwwedVcEDA~T~kg------------~g~~~I~GGgA~~A~DKV~Q 114 (196)
T 3t9g_A 53 GANLKNVIIGAP----GCDGIHCY--GDNVVENVVWEDVGEDALTVKS------------EGVVEVIGGSAKEAADKVFQ 114 (196)
T ss_dssp TCEEEEEEECSC----CTTCEEEC--SSEEEEEEEESSCCSCSEEECS------------SEEEEEESCEEEEEEEEEEE
T ss_pred CCEEEEEEECCC----CcCcEEEc--CCEeEEEEEeeeeeceeeEEcC------------CCeEEEECCCccCCCceEEE
Confidence 556777777442 47899885 467888988877 889999885 33444444433321011111
Q ss_pred ecccccCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCcceeE
Q 012788 289 FGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVAF 343 (456)
Q Consensus 289 igs~~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~~i 343 (456)
. .+--.+.|+|.++.+ .|-.+.+-. ....=++|.++|+++.+++..+
T Consensus 115 ~-----Ng~Gtv~I~nF~~~~--~GKl~RSCG-nc~~~r~v~i~~v~~~n~k~~l 161 (196)
T 3t9g_A 115 L-----NAPCTFKVKNFTATN--IGKLVRQNG-NTTFKVVIYLEDVTLNNVKSCV 161 (196)
T ss_dssp E-----CSSEEEEEEEEEEEE--EEEEEEECT-TCCSCEEEEEEEEEEEEEEEEE
T ss_pred E-----CCCceEEEeeEEEcc--CCEEEEcCC-CCCceeEEEEeCeEEeCCEEEE
Confidence 1 111235555555543 343444432 1223367777777777766554
|
| >3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} | Back alignment and structure |
|---|
Probab=94.50 E-value=1.5 Score=38.53 Aligned_cols=133 Identities=8% Similarity=0.031 Sum_probs=90.0
Q ss_pred eccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccc
Q 012788 185 SENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIA 264 (456)
Q Consensus 185 ~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~ 264 (456)
-+..+|+|+.|-.++..++|.. -+.+|+|+....- .-|.+.+.++..++|.+.-.++.+|-|--..+
T Consensus 51 e~GaTLkNvIIG~~~~dGIHC~--G~ctl~NVwwedV----cEDA~T~kg~g~~~I~GGgA~~A~DKV~Q~Ng------- 117 (196)
T 3t9g_A 51 EKGANLKNVIIGAPGCDGIHCY--GDNVVENVVWEDV----GEDALTVKSEGVVEVIGGSAKEAADKVFQLNA------- 117 (196)
T ss_dssp CTTCEEEEEEECSCCTTCEEEC--SSEEEEEEEESSC----CSCSEEECSSEEEEEESCEEEEEEEEEEEECS-------
T ss_pred cCCCEEEEEEECCCCcCcEEEc--CCEeEEEEEeeee----eceeeEEcCCCeEEEECCCccCCCceEEEECC-------
Confidence 4578999999977777888886 3678999988763 46888888777889999999887776643333
Q ss_pred cCCCcccEEEEEEEEecCCCCeeEecccc-cCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCccee
Q 012788 265 YGRPTTDVHIRRVLLQSSSGSSVAFGSEM-SGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVA 342 (456)
Q Consensus 265 ~~~~s~ni~I~n~~~~~~~~~gi~igs~~-~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~~ 342 (456)
.-.+.|.|.+..+ .|--+-|-. ...-++|.++|+++.+....+ +++... -..+++.|+++.++...
T Consensus 118 ----~Gtv~I~nF~~~~---~GKl~RSCGnc~~~r~v~i~~v~~~n~k~~l-~rtdS~----~~~~~~~n~~~~~~~~~ 184 (196)
T 3t9g_A 118 ----PCTFKVKNFTATN---IGKLVRQNGNTTFKVVIYLEDVTLNNVKSCV-AKSDSP----VSELWYHNLNVNNCKTL 184 (196)
T ss_dssp ----SEEEEEEEEEEEE---EEEEEEECTTCCSCEEEEEEEEEEEEEEEEE-EECCCT----TCEEEEEEEEEEEEEEE
T ss_pred ----CceEEEeeEEEcc---CCEEEEcCCCCCceeEEEEeCeEEeCCEEEE-EEcCCC----CCEEEEecceecCCCcc
Confidence 4567888887753 122111111 123479999999998864432 333321 15677788887776553
|
| >1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 | Back alignment and structure |
|---|
Probab=94.45 E-value=0.47 Score=45.83 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=67.7
Q ss_pred ecccceEEEEEEEECCCCCC--CCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCC
Q 012788 206 VYCSNVHIQNISVHAPPESP--YTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSS 283 (456)
Q Consensus 206 ~~~~nv~i~n~~i~~~~~~~--n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~ 283 (456)
...++++++|++|.+..... ..-++.+ .++++.++||.|....|.+....+ + ..++||++.+.
T Consensus 91 v~a~~f~~~nlt~~Nt~g~~~~qAvAl~v-~~d~~~f~~c~f~g~QDTLy~~~~------------r-~~~~~c~I~G~- 155 (319)
T 1gq8_A 91 AVGAGFLARDITFQNTAGAAKHQAVALRV-GSDLSAFYRCDILAYQDSLYVHSN------------R-QFFINCFIAGT- 155 (319)
T ss_dssp ECSTTCEEEEEEEEECCCGGGCCCCSEEE-CCTTEEEEEEEEECSTTCEEECSS------------E-EEEESCEEEES-
T ss_pred EECCCEEEEEeEeEccCCCcCCceEEEEe-cCCcEEEEEeEECccceeeeecCc------------c-EEEEecEEEee-
Confidence 35789999999999864321 2335555 478888999999988888877652 3 37889988864
Q ss_pred CCeeEecccccCcEEeEEEEeEEEECCcc----eEEEEecCCC--CceEEeEEEEceEecC
Q 012788 284 GSSVAFGSEMSGGISNVQVEKIHLYDSLN----GIEFRTTKGR--GGYIRQIVISDAELYN 338 (456)
Q Consensus 284 ~~gi~igs~~~~~v~nI~v~n~~~~~~~~----gi~iks~~g~--~g~v~nI~~~ni~~~~ 338 (456)
-+ +-.|. ....|+||++..... .-.|.. +++ ...-..++|.|+++..
T Consensus 156 vD-FIfG~------~~a~f~~c~i~~~~~~~~~~~~itA-~~r~~~~~~~G~vf~~c~i~~ 208 (319)
T 1gq8_A 156 VD-FIFGN------AAVVLQDCDIHARRPGSGQKNMVTA-QGRTDPNQNTGIVIQKSRIGA 208 (319)
T ss_dssp SS-CEEES------CEEEEESCEEEECCCSTTCCEEEEE-ECCCSTTCCCEEEEESCEEEE
T ss_pred ee-EEecC------CcEEEEeeEEEEecCCCCCceEEEe-CCCCCCCCCceEEEECCEEec
Confidence 22 22232 237888888875321 112221 111 1223456777777764
|
| >1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.35 Score=46.66 Aligned_cols=110 Identities=16% Similarity=0.209 Sum_probs=68.3
Q ss_pred ecccceEEEEEEEECCCCCC--CCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCC
Q 012788 206 VYCSNVHIQNISVHAPPESP--YTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSS 283 (456)
Q Consensus 206 ~~~~nv~i~n~~i~~~~~~~--n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~ 283 (456)
...++++++|++|.+..... ..-++.+ .++++.++||.|....|.+....+ ++ .++||++.+.
T Consensus 87 v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v-~~d~~~f~~c~f~g~QDTLy~~~~------------r~-~~~~c~I~G~- 151 (317)
T 1xg2_A 87 AVGQGFILQDICIQNTAGPAKDQAVALRV-GADMSVINRCRIDAYQDTLYAHSQ------------RQ-FYRDSYVTGT- 151 (317)
T ss_dssp ECSTTCEEESCEEEECCCGGGCCCCSEEE-CCTTEEEESCEEECSTTCEEECSS------------EE-EEESCEEEES-
T ss_pred EECCCEEEEEeEEecccCCccCceEEEEE-eCCcEEEEEeEeCccccceeecCc------------cE-EEEeeEEEec-
Confidence 36789999999998864321 2335555 478899999999988888877653 33 7899999864
Q ss_pred CCeeEecccccCcEEeEEEEeEEEECCcc----eEEEEecCCC--CceEEeEEEEceEecC
Q 012788 284 GSSVAFGSEMSGGISNVQVEKIHLYDSLN----GIEFRTTKGR--GGYIRQIVISDAELYN 338 (456)
Q Consensus 284 ~~gi~igs~~~~~v~nI~v~n~~~~~~~~----gi~iks~~g~--~g~v~nI~~~ni~~~~ 338 (456)
--+-.|. ....|+||++..... .-.|.. +++ ...-..+.|.|+++..
T Consensus 152 -vDFIfG~------~~avf~~c~i~~~~~~~~~~~~itA-~~r~~~~~~~G~vf~~c~i~~ 204 (317)
T 1xg2_A 152 -VDFIFGN------AAVVFQKCQLVARKPGKYQQNMVTA-QGRTDPNQATGTSIQFCNIIA 204 (317)
T ss_dssp -SSCEEEC------CEEEEESCEEEECCCSTTCCEEEEE-ECCCCTTSCCEEEEESCEEEE
T ss_pred -eeEEcCC------ceEEEeeeEEEEeccCCCCccEEEe-cCcCCCCCCcEEEEECCEEec
Confidence 2222332 137889998875321 112221 111 1223446777777764
|
| >1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 | Back alignment and structure |
|---|
Probab=92.92 E-value=1.5 Score=38.62 Aligned_cols=41 Identities=29% Similarity=0.446 Sum_probs=22.8
Q ss_pred ceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEec-CCceEecCC
Q 012788 210 NVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAM-GHDAISLKS 256 (456)
Q Consensus 210 nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-gDD~iai~s 256 (456)
..+++|+.|-.+ ..||||... +-+|+|+.++. +.|++.+++
T Consensus 49 GaTLkNvIIG~~----~~dGIHC~G--~CtleNVwwedVcEDA~T~k~ 90 (197)
T 1ee6_A 49 GASLKNVVIGAP----AADGVHCYG--DCTITNVIWEDVGEDALTLKS 90 (197)
T ss_dssp TEEEEEEEECSS----CTTCEEEES--CEEEEEEEESSCCSCSEEEEE
T ss_pred CCEEEEEEEcCC----CcccEEEcC--ceeEEEEEeeeccccccEEcC
Confidence 345555555332 356666642 35666666655 666666664
|
| >1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 | Back alignment and structure |
|---|
Probab=92.34 E-value=1.1 Score=39.51 Aligned_cols=109 Identities=13% Similarity=0.049 Sum_probs=68.7
Q ss_pred eccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccc
Q 012788 185 SENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIA 264 (456)
Q Consensus 185 ~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~ 264 (456)
-+..+|+|+.|-.+...++|... +.+|+|+....- .-|.+.+.++..++|.+.-.++.+|-|--..+
T Consensus 47 e~GaTLkNvIIG~~~~dGIHC~G--~CtleNVwwedV----cEDA~T~k~~g~~~I~GGgA~~A~DKV~Q~Ng------- 113 (197)
T 1ee6_A 47 EAGASLKNVVIGAPAADGVHCYG--DCTITNVIWEDV----GEDALTLKSSGTVNISGGAAYKAYDKVFQINA------- 113 (197)
T ss_dssp CTTEEEEEEEECSSCTTCEEEES--CEEEEEEEESSC----CSCSEEEEESEEEEEESCEEEEEEEEEEEECS-------
T ss_pred cCCCEEEEEEEcCCCcccEEEcC--ceeEEEEEeeec----cccccEEcCCCeEEEECCCccCCCccEEEecC-------
Confidence 45789999999877888999875 588999998763 46778887666788888888776665533332
Q ss_pred cCCCcccEEEEEEEEecCCCCeeEecccc-cCcEEeEEEEeEEEECCcce
Q 012788 265 YGRPTTDVHIRRVLLQSSSGSSVAFGSEM-SGGISNVQVEKIHLYDSLNG 313 (456)
Q Consensus 265 ~~~~s~ni~I~n~~~~~~~~~gi~igs~~-~~~v~nI~v~n~~~~~~~~g 313 (456)
.-.+.|.|.+..+ .|=-.-|-. ...-++|.++|+++.+....
T Consensus 114 ----~Gtv~I~nF~~~~---~GKl~RScGnc~~~r~v~i~~v~~~~~k~~ 156 (197)
T 1ee6_A 114 ----AGTINIRNFRADD---IGKLVRQNGGTTYKVVMNVENCNISRVKDA 156 (197)
T ss_dssp ----SEEEEEESCEEEE---EEEEEEECTTCCSCEEEEEESCEEEEEEEE
T ss_pred ----CceEEEeeEEEcc---CCEEEEcCCCCccceEEEEeceEEECceEE
Confidence 3446666655432 111111100 01125677777777665443
|
| >3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A | Back alignment and structure |
|---|
Probab=91.33 E-value=4.7 Score=38.57 Aligned_cols=30 Identities=33% Similarity=0.256 Sum_probs=17.3
Q ss_pred CCceeeecCccCEEEEecEEec-CCceEecCC
Q 012788 226 YTVGIVPDSSDNVCIEDCIIAM-GHDAISLKS 256 (456)
Q Consensus 226 n~DGi~~~~s~nV~I~n~~i~~-gDD~iai~s 256 (456)
..||||... .+-+|+|+.++. +.|++.++.
T Consensus 171 ~~dGIHC~~-G~CtleNVwwedVcEDA~T~kg 201 (344)
T 3b4n_A 171 GADGIHCDS-GNCTIENVIWEDICEDAATNNG 201 (344)
T ss_dssp CTTCEEEEE-SEEEEEEEEESSCSSCSEEECS
T ss_pred CccceEEcc-CCeeEEEEeehhcccccceecC
Confidence 356666641 135666666655 666666663
|
| >2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A | Back alignment and structure |
|---|
Probab=89.52 E-value=2.8 Score=40.78 Aligned_cols=83 Identities=10% Similarity=0.150 Sum_probs=58.0
Q ss_pred cccceEEEEEEEECCCC--------------CCCCceeee---cCccCEEEEecEEecCCceEecCCCCCccccccCCCc
Q 012788 207 YCSNVHIQNISVHAPPE--------------SPYTVGIVP---DSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPT 269 (456)
Q Consensus 207 ~~~nv~i~n~~i~~~~~--------------~~n~DGi~~---~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s 269 (456)
.+++++++|++|.+... ........+ ..+.++.++||.|....|.+....
T Consensus 94 ~a~~f~a~nlt~~Nt~~~~~~~~~~~~~~~~~~~~QAvAl~v~v~~d~~~f~~c~f~G~QDTLy~~~------------- 160 (342)
T 2nsp_A 94 SAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQATLYVSG------------- 160 (342)
T ss_dssp CSBSCEEEEEEEEECCCHHHHHHSCTTCTTCCSCCCCCSEEECTTCBSEEEEEEEEECSTTCEEECS-------------
T ss_pred ECCCEEEEeeEEEccccccccccccccCCccccCCceEEEEEeeccCcEEEEeeEEecccceEEECC-------------
Confidence 57899999999998641 112232333 357889999999999888887764
Q ss_pred ccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECC
Q 012788 270 TDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDS 310 (456)
Q Consensus 270 ~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~ 310 (456)
....++||++.+. --+=.|. ....|+||++.-.
T Consensus 161 gr~~~~~c~I~G~--vDFIFG~------a~a~f~~c~i~~~ 193 (342)
T 2nsp_A 161 GRSFFSDCRISGT--VDFIFGD------GTALFNNCDLVSR 193 (342)
T ss_dssp SEEEEESCEEEES--EEEEEES------SEEEEESCEEEEC
T ss_pred CCEEEEcCEEEec--eEEEeCC------ceEEEecCEEEEe
Confidence 3578899999874 2233342 2478999999743
|
| >3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=86.73 E-value=5.9 Score=38.80 Aligned_cols=113 Identities=12% Similarity=0.087 Sum_probs=71.0
Q ss_pred ecccceEEEEEEEECCCCC--------------CCC--ceeeec-CccCEEEEecEEecCCceEecCCCCCccccccCCC
Q 012788 206 VYCSNVHIQNISVHAPPES--------------PYT--VGIVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRP 268 (456)
Q Consensus 206 ~~~~nv~i~n~~i~~~~~~--------------~n~--DGi~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~ 268 (456)
...++++++|++|.+.... ... =++.+. .+.++.+.||.|....|.+....
T Consensus 119 V~a~~f~a~nitf~Nt~~~~~~~~~~~~~p~~~~~~QAvAl~v~~~~D~~~f~~C~f~G~QDTLy~~~------------ 186 (364)
T 3uw0_A 119 VNAPNFTAENLTIRNDFDFPANKKKADTDPTKLKDTQAVALLLAENSDKARFKAVKLEGYQDTLYSKT------------ 186 (364)
T ss_dssp ECSTTCEEEEEEEEECCCHHHHHHSCTTCTTCCSCCCCCSEEECTTCEEEEEEEEEEECSBSCEEECT------------
T ss_pred EECCCEEEEeeeeEcCCcccccccccccccccccCCccEEEEEecCCCeEEEEeeEEEecccceEeCC------------
Confidence 3578999999999987420 112 244444 47889999999999888887763
Q ss_pred cccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCc------ceEEEEecCCCCceEEeEEEEceEecC
Q 012788 269 TTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSL------NGIEFRTTKGRGGYIRQIVISDAELYN 338 (456)
Q Consensus 269 s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~------~gi~iks~~g~~g~v~nI~~~ni~~~~ 338 (456)
.....+++|++.+. --+=.|. ....|+||++.-.. .+-.|.........-.-+.|.|+++..
T Consensus 187 ~gr~yf~~c~I~Gt--vDFIFG~------a~a~f~~c~i~~~~~~~~~~~~g~ITA~~~~~~~~~G~vf~~c~i~~ 254 (364)
T 3uw0_A 187 GSRSYFSDCEISGH--VDFIFGS------GITVFDNCNIVARDRSDIEPPYGYITAPSTLTTSPYGLIFINSRLTK 254 (364)
T ss_dssp TCEEEEESCEEEES--EEEEEES------SEEEEESCEEEECCCSSCSSCCEEEEEECCCTTCSCCEEEESCEEEE
T ss_pred CCCEEEEcCEEEcC--CCEECCc------ceEEEEeeEEEEeccCcccCCccEEEeCCcCCCCCcEEEEEeeEEec
Confidence 35678999999874 2333342 24789999997431 112232211111111237888888874
|
| >3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* | Back alignment and structure |
|---|
Probab=83.07 E-value=0.39 Score=47.34 Aligned_cols=22 Identities=36% Similarity=0.265 Sum_probs=20.2
Q ss_pred cCccCCCCCchHHHHHHHHHHh
Q 012788 46 FGAVGDGKTLNTLAFQNAIFYL 67 (456)
Q Consensus 46 fGA~gDG~tddT~Aiq~Ai~~a 67 (456)
-||+|||++|||+|+.+|+.++
T Consensus 4 ~~a~gdgvtddt~a~~~~l~~~ 25 (670)
T 3ju4_A 4 GSAKGDGVTDDTAALTSALNDT 25 (670)
T ss_dssp CCCCCEEEEECHHHHHHHHHHS
T ss_pred CcccCCCccCcHHHHHHHhccC
Confidence 4899999999999999999865
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 456 | ||||
| d1bhea_ | 376 | b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor | 1e-67 | |
| d1czfa_ | 335 | b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill | 2e-53 | |
| d1rmga_ | 422 | b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a | 1e-50 | |
| d1ia5a_ | 339 | b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill | 3e-46 | |
| d1nhca_ | 336 | b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill | 1e-43 | |
| d1hg8a_ | 349 | b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo | 1e-42 | |
| d1ogmx2 | 373 | b.80.1.10 (X:202-574) Dextranase, catalytic domain | 1e-40 | |
| d1k5ca_ | 333 | b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p | 2e-38 | |
| d1o88a_ | 353 | b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, | 3e-15 |
| >d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Erwinia carotovora, subsp. carotovora [TaxId: 554]
Score = 218 bits (557), Expect = 1e-67
Identities = 74/385 (19%), Positives = 147/385 (38%), Gaps = 42/385 (10%)
Query: 48 AVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGK---WLTGSFNLTSHLTLFLEKGA 104
+ + T Q A+ + D+G A + + +G +L+G +L S ++L ++KG
Sbjct: 17 TLKADSSTATSTIQKAL----NNCDQGKA-VRLSAGSTSVFLSGPLSLPSGVSLLIDKGV 71
Query: 105 VILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWW 164
+ N ++ PS ++ G+ + I + + GTIDGQG V
Sbjct: 72 TLRAVNNAKSFE---NAPSSCGVVDKNGKGCDAFITAVSTTNSGIY-GPGTIDGQGGVKL 127
Query: 165 DWFSSQ-----------SLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHI 213
L + P L++ S+N + N++ +N+P +++
Sbjct: 128 QDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTA 187
Query: 214 QNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVH 273
++ P + T GI P SS N+ I IA G D +++K+ T ++
Sbjct: 188 WKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGR------AETRNIS 241
Query: 274 IRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISD 333
I + G S+ + G+ NV V+ + + + NG+ ++ K G + + S+
Sbjct: 242 ILHNDFGTGHGMSIGS---ETMGVYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSN 298
Query: 334 AELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQEAPFA 393
+ N+ + +P ITFKD+ G
Sbjct: 299 VVMKNVAKPIVIDTVYEKK-----EGSNVPDWSDITFKDVTSETKG-VVVLNGENAKKPI 352
Query: 394 NICLSNISLSINPGSYNSWECSNIH 418
+ + N+ L+ + W+ N++
Sbjct: 353 EVTMKNVKLTSDST----WQIKNVN 373
|
| >d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]
Score = 179 bits (456), Expect = 2e-53
Identities = 57/379 (15%), Positives = 119/379 (31%), Gaps = 52/379 (13%)
Query: 51 DGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQ 110
D T T A A + + VP+G L + LTS + E G +
Sbjct: 1 DSCTFTTAAAAKA--GKAKCSTITLNNIEVPAGTTLDLT-GLTSGTKVIFE-GTTTFQYE 56
Query: 111 NPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNG-TIDGQGSVWWDWFSS 169
+ + ++G + VTG +G I+ G+ WWD +
Sbjct: 57 EWAGPLIS--------------------MSG---EHITVTGASGHLINCDGARWWDGKGT 93
Query: 170 QSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPY--- 226
+P ++ ++ L N P V +++ +++++
Sbjct: 94 S--GKKKPKFFYAHGLDSSSITGLNIKNTPLMAFS-VQANDITFTDVTINNADGDTQGGH 150
Query: 227 -TVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGS 285
T +S V I + D +++ SG + + G
Sbjct: 151 NTDAFDVGNSVGVNIIKPWVHNQDDCLAVNSGEN------------IWFTGGTCIGGHGL 198
Query: 286 SV-AFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVAFG 344
S+ + G + + NV +E + +S N + +T G G + +I S+ + I+
Sbjct: 199 SIGSVGDRSNNVVKNVTIEHSTVSNSENAVRIKTISGATGSVSEITYSNIVMSGISDYGV 258
Query: 345 ACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT-IAGNFTGIQEAPFANICLSNISLS 403
P I + + + G+ + + ++ ++ ++
Sbjct: 259 VIQQDYEDGKPTGKPTNGVTIQDVKLESVTGSVDSGATEIYLLCGSGSCSDWTWDDVKVT 318
Query: 404 INPGSYNSWECSNIHGSSE 422
G S C N +
Sbjct: 319 ---GGKKSTACKNFPSVAS 334
|
| >d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Rhamnogalacturonase A species: Aspergillus aculeatus [TaxId: 5053]
Score = 175 bits (444), Expect = 1e-50
Identities = 68/416 (16%), Positives = 142/416 (34%), Gaps = 62/416 (14%)
Query: 32 PTLDPRPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGK-WLTGSF 90
+ + +I +GAV D T A +A A K G +Y+PSG L
Sbjct: 12 ASTKGATKTCNILSYGAVADNSTDVGPAITSAWA-----ACKSGGLVYIPSGNYALNTWV 66
Query: 91 NLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVT 150
LT ++ +I + S ++ + T
Sbjct: 67 TLTGGSATAIQLDGIIYRTGTASGN-------------------MIAVTDTTDFELFSST 107
Query: 151 GDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSN 210
G + G G V+ ++ + V ++ ++APA++ CS+
Sbjct: 108 S-KGAVQGFGYVYHAE------GTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSD 160
Query: 211 VHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTT 270
+ N+++ E V S N+ + D + + +++KS
Sbjct: 161 GEVYNMAIRGGNEGGLDGIDVWGS--NIWVHDVEVTNKDECVTVKSP-----------AN 207
Query: 271 DVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIV 330
++ + + S G ++ ++++ ++ + S + G G + ++
Sbjct: 208 NILVESIYCNWSGGCAMG-SLGADTDVTDIVYRNVYTWSSNQMY-MIKSNGGSGTVSNVL 265
Query: 331 ISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAG----NFTG 386
+ + + + G S D + ++ IT K+ GT A
Sbjct: 266 LENFIGHGNAYSLDIDGYWSSMTAV--AGDGVQ-LNNITVKNWKGTEANGATRPPIRVVC 322
Query: 387 IQEAPFANICLSNISLSINPGSYNSWECSNIHGSSESVFPEPCPELENSSSNSSST 442
AP ++ L +I++ GS + C + +GS L++SSS++S T
Sbjct: 323 SDTAPCTDLTLEDIAIWTESGSSELYLCRSAYGSGYC--------LKDSSSHTSYT 370
|
| >d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Fungus (Aspergillus aculeatus) [TaxId: 5053]
Score = 161 bits (408), Expect = 3e-46
Identities = 59/358 (16%), Positives = 116/358 (32%), Gaps = 50/358 (13%)
Query: 71 ADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIEL 130
+ + + VPSG L + L G ++ S +
Sbjct: 23 STIVLSNVAVPSGTTLDLTK---------LNDGTHVIFSGETT----------------F 57
Query: 131 PGRRYKSLINGYMLRDVVVTGDNG-TIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVV 189
+ + + D+ +TG +G +I+G GS WWD ++P S N V
Sbjct: 58 GYKEWSGPLISVSGSDLTITGASGHSINGDGSRWWDGEGGNG-GKTKPKFFAAHSLTNSV 116
Query: 190 VSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPES----PYTVGIVPDSSDNVCIEDCII 245
+S L +N+P + +++I++ T +S V I +
Sbjct: 117 ISGLKIVNSPVQVFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATV 176
Query: 246 AMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKI 305
D +++ SG + Y S + G + NV
Sbjct: 177 YNQDDCVAVNSGENIYF-----------SGGYCSGGHGLSIGSVGGRSDNTVKNVTFVDS 225
Query: 306 HLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNI-NVAFGACGNCGSHPDDDFDPDALPA 364
+ +S NG+ +T G + + D L +I N + D P
Sbjct: 226 TIINSDNGVRIKTNIDTTGSVSDVTYKDITLTSIAKYGIVVQQN---YGDTSSTPTTGVP 282
Query: 365 IDQITFKDIIGTNIT-IAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGSS 421
I ++ G+ ++ ++ +++S+S G S +C+N+ +
Sbjct: 283 ITDFVLDNVHGSVVSSGTNILISCGSGSCSDWTWTDVSVS---GGKTSSKCTNVPSGA 337
|
| >d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]
Score = 154 bits (389), Expect = 1e-43
Identities = 70/374 (18%), Positives = 123/374 (32%), Gaps = 54/374 (14%)
Query: 56 NTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHW 115
+ +I S +D + + VP+G+ L S + T+ E G G W
Sbjct: 7 SASEASESI---SSCSDVVLSSIEVPAGETLDLS-DAADGSTITFE-GTTSFG---YKEW 58
Query: 116 DVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDN-GTIDGQGSVWWDWFSSQSLNY 174
G I G+ D+ VT + IDG GS WWD +
Sbjct: 59 K--------GPLIRFGGK------------DLTVTMADGAVIDGDGSRWWDSKGTNG-GK 97
Query: 175 SRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPES----PYTVGI 230
++P + E+ + N P I V +NVH+ + ++ T G
Sbjct: 98 TKPKFMYIHDVEDSTFKGINIKNTPVQAIS-VQATNVHLNDFTIDNSDGDDNGGHNTDGF 156
Query: 231 VPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSV-AF 289
S V I + D I++ + G S+ +
Sbjct: 157 DISESTGVYISGATVKNQDDCIAIN------------SGESISFTGGTCSGGHGLSIGSV 204
Query: 290 GSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNI-NVAFGACGN 348
G + NV + + +S NG+ +T G + +I S+ +L I + +
Sbjct: 205 GGRDDNTVKNVTISDSTVSNSANGVRIKTIYKETGDVSEITYSNIQLSGITDYGIVIEQD 264
Query: 349 CGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGI-QEAPFANICLSNISLSINPG 407
+ +P I +T + GT A + + ++ S + LS G
Sbjct: 265 YENGSPTGTPSTGIP-ITDVTVDGVTGTLEDDATQVYILCGDGSCSDWTWSGVDLS---G 320
Query: 408 SYNSWECSNIHGSS 421
S +C N+ +
Sbjct: 321 GKTSDKCENVPSGA 334
|
| >d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Fusarium moniliforme [TaxId: 117187]
Score = 151 bits (383), Expect = 1e-42
Identities = 66/391 (16%), Positives = 131/391 (33%), Gaps = 60/391 (15%)
Query: 51 DGKTL-NTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGS 109
D ++ A+ S + VP+GK L S +L + T+ + G +
Sbjct: 1 DPCSVTEYSGLATAV---SSCKNIVLNGFQVPTGKQLDLS-SLQNDSTVTFK-GTTTFAT 55
Query: 110 QNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDN-GTIDGQGSVWWDWFS 168
+ ++ + +I+G ++ +TG + IDG G +WD
Sbjct: 56 TADNDFNPI-------------------VISG---SNITITGASGHVIDGNGQAYWDGKG 93
Query: 169 SQSLNYSRPHL--VEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISV-------- 218
S S + +P V ++ N ++NL N P + S + I + +
Sbjct: 94 SNSNSNQKPDHFIVVQKTTGNSKITNLNIQNWPVHCFDITGSSQLTISGLILDNRAGDKP 153
Query: 219 ----HAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHI 274
+ P + T G SSD+V +++ + D +++ SG +
Sbjct: 154 NAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYNQDDCVAVTSGTNIVV-----------S 202
Query: 275 RRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDA 334
S + G + + VQ + +S NG ++ G G I + +
Sbjct: 203 NMYCSGGHGLSIGSVGGKSDNVVDGVQFLSSQVVNSQNGCRIKSNSGATGTINNVTYQNI 262
Query: 335 ELYNI-NVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT-IAGNFTGIQEAPF 392
L NI + + + + I I F + GT + F +
Sbjct: 263 ALTNISTYGVDVQQDYLNGGPTGKPTNGVK-ISNIKFIKVTGTVASSAQDWFILCGDGSC 321
Query: 393 ANICLSNISLSINPGSYNSWECSNIHGSSES 423
+ S +++ G + C+ + S
Sbjct: 322 SGFTFSGNAIT---GGGKTSSCNYPTNTCPS 349
|
| >d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Dextranase, catalytic domain domain: Dextranase, catalytic domain species: Penicillium minioluteum [TaxId: 28574]
Score = 147 bits (371), Expect = 1e-40
Identities = 46/403 (11%), Positives = 91/403 (22%), Gaps = 66/403 (16%)
Query: 46 FGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAV 105
G + NT + + + LY P G + + L +
Sbjct: 3 SGMIPHMTPDNTQTMTPGP--INNGDWGAKSILYFPPGVYWMNQDQSGNSGKLGSNHIRL 60
Query: 106 ILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWD 165
+ PG K I + ++ TG + G+ V+
Sbjct: 61 N---------------SNTYWVYLAPGAYVKGAIEYFTKQNFYATGHG-ILSGENYVYQA 104
Query: 166 WFSSQ-------SLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISV 218
S + + T P + S + Q
Sbjct: 105 NAGDNYIAVKSDSTSLRMWWHNNLGGGQTWYCVGPTINAPPFNTMDFNGNSGISSQISDY 164
Query: 219 HAPPE-SPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRV 277
T G + N + D + DAI + + R
Sbjct: 165 KQVGAFFFQTDGP--EIYPNSVVHDVFWHVNDDAIKIYYS-------------GASVSRA 209
Query: 278 LLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSL---------------NGIEFRTTKGR 322
+ + S IS V ++ +++ + +
Sbjct: 210 TIWKCHNDPIIQMGWTSRDISGVTIDTLNVIHTRYIKSETVVPSAIIGASPFYASGMSPD 269
Query: 323 GGYIRQIVISDAELYNIN---VAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT 379
+ +S+ + N + + A + IGT +
Sbjct: 270 SRKSISMTVSNVVCEGLCPSLFRITPLQNYKNFVVKNV------AFPDGLQTNSIGTGES 323
Query: 380 I-AGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGSS 421
I + + +++ NS NI GS
Sbjct: 324 IIPAASGLTMGLAISAWTIGGQKVTMENFQANSLGQFNIDGSY 366
|
| >d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]
Score = 140 bits (354), Expect = 2e-38
Identities = 58/387 (14%), Positives = 119/387 (30%), Gaps = 76/387 (19%)
Query: 54 TLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQN-- 111
T+ ++ I + VP+G L L +KGA + + +
Sbjct: 2 TVKSVDDAKDI---AGCSAVTLNGFTVPAGNTLV----------LNPDKGATVTMAGDIT 48
Query: 112 --PSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSS 169
+ D PL + + G + DG G+++WD +
Sbjct: 49 FAKTTLD--GPLFTIDG------------------TGINFVGADHIFDGNGALYWDGKGT 88
Query: 170 QSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIH------PVYCSNVHIQNISVHAPPE 223
+ +PH I + LN+PA I + + + + +
Sbjct: 89 NN-GTHKPHPFLKIKG-SGTYKKFEVLNSPAQAISVGPTDAHLTLDGITVDDFAGDTKNL 146
Query: 224 SPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSS 283
T G S++NV I++CI+ D I++ ++ Q S
Sbjct: 147 GHNTDGFDV-SANNVTIQNCIVKNQDDCIAIN------------DGNNIRFENN--QCSG 191
Query: 284 GSSVAFGSEMSGG-ISNVQVEKIHLYDSLNGIEFRTTKG-RGGYIRQIVISDAELYN--- 338
G ++ GS +G +SNV ++ + S+ G+ + + + + +
Sbjct: 192 GHGISIGSIATGKHVSNVVIKGNTVTRSMYGVRIKAQRTATSASVSGVTYDANTISGIAK 251
Query: 339 --INVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT--IAGNFTGIQEAPFAN 394
+ ++ + G +P + F T A T N
Sbjct: 252 YGVLISQSYPDDVG-------NPGTGAPFSDVNFTGGATTIKVNNAATRVTVECGNCSGN 304
Query: 395 ICLSNISLSINPGSYNSWECSNIHGSS 421
S ++++ + + I G
Sbjct: 305 WNWSQLTVTGGKAGTIKSDKAKITGGQ 331
|
| >d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Erwinia chrysanthemi, type C [TaxId: 556]
Score = 74.5 bits (182), Expect = 3e-15
Identities = 37/268 (13%), Positives = 75/268 (27%), Gaps = 26/268 (9%)
Query: 87 TGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRD 146
TG + T+ + + +++D G ++ G Y +I D
Sbjct: 4 TGGYAATAGGNVTGAVSKTA--TSMQDIVNIIDAARLDANGKKVKGGAYPLVITYTGNED 61
Query: 147 VVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPV 206
++ I GQ W + ++ + + +A + I
Sbjct: 62 SLINAAAANICGQ---WSKDPRGVEI---------KEFTKGITIIGANGSSAN-FGIWIK 108
Query: 207 YCSNVHIQNISVHAPPESPY-TVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAY 265
S+V +QN+ + P I D S NV ++ + + D +
Sbjct: 109 KSSDVVVQNMRIGYLPGGAKDGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESA 168
Query: 266 ---GRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGR 322
+ V + + GS S N+ + + R R
Sbjct: 169 VDIKGASNTVTVSYNYIHGVKKVG-LDGSSSSDTGRNITYHHNYYN----DVNARLPLQR 223
Query: 323 GGY--IRQIVISDAELYNINVAFGACGN 348
GG + ++ +NV
Sbjct: 224 GGLVHAYNNLYTNITGSGLNVRQNGQAL 251
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 456 | |||
| d1bhea_ | 376 | Polygalacturonase {Erwinia carotovora, subsp. caro | 100.0 | |
| d1rmga_ | 422 | Rhamnogalacturonase A {Aspergillus aculeatus [TaxI | 100.0 | |
| d1ia5a_ | 339 | Polygalacturonase {Fungus (Aspergillus aculeatus) | 100.0 | |
| d1czfa_ | 335 | Polygalacturonase {Fungus (Aspergillus niger), end | 100.0 | |
| d1hg8a_ | 349 | Polygalacturonase {Fusarium moniliforme [TaxId: 11 | 100.0 | |
| d1nhca_ | 336 | Polygalacturonase {Fungus (Aspergillus niger), end | 100.0 | |
| d1k5ca_ | 333 | Polygalacturonase {Fungus (Stereum purpureum), end | 100.0 | |
| d1ogmx2 | 373 | Dextranase, catalytic domain {Penicillium miniolut | 100.0 | |
| d1ia5a_ | 339 | Polygalacturonase {Fungus (Aspergillus aculeatus) | 99.83 | |
| d1bhea_ | 376 | Polygalacturonase {Erwinia carotovora, subsp. caro | 99.81 | |
| d1hg8a_ | 349 | Polygalacturonase {Fusarium moniliforme [TaxId: 11 | 99.81 | |
| d1czfa_ | 335 | Polygalacturonase {Fungus (Aspergillus niger), end | 99.8 | |
| d1nhca_ | 336 | Polygalacturonase {Fungus (Aspergillus niger), end | 99.77 | |
| d1rmga_ | 422 | Rhamnogalacturonase A {Aspergillus aculeatus [TaxI | 99.75 | |
| d1k5ca_ | 333 | Polygalacturonase {Fungus (Stereum purpureum), end | 99.68 | |
| d1h80a_ | 464 | iota-carrageenase {Alteromonas sp., atcc 43554 [Ta | 99.64 | |
| d1ogmx2 | 373 | Dextranase, catalytic domain {Penicillium miniolut | 99.54 | |
| d1o88a_ | 353 | Pectate lyase {Erwinia chrysanthemi, type C [TaxId | 98.81 | |
| d1ofla_ | 481 | Chondroitinase B {Pedobacter heparinus [TaxId: 984 | 98.56 | |
| d1ru4a_ | 400 | Pectate transeliminase {Erwinia chrysanthemi [TaxI | 98.14 | |
| d1idka_ | 359 | Pectin lyase {Aspergillus niger, type A [TaxId: 50 | 97.94 | |
| d1qcxa_ | 359 | Pectin lyase {Aspergillus niger, type B [TaxId: 50 | 97.8 | |
| d1o88a_ | 353 | Pectate lyase {Erwinia chrysanthemi, type C [TaxId | 97.76 | |
| d1pxza_ | 346 | Major pollen allergen Jun a 1 {Ozark white cedar ( | 97.74 | |
| d1idka_ | 359 | Pectin lyase {Aspergillus niger, type A [TaxId: 50 | 97.49 | |
| d1qcxa_ | 359 | Pectin lyase {Aspergillus niger, type B [TaxId: 50 | 97.48 | |
| d1pxza_ | 346 | Major pollen allergen Jun a 1 {Ozark white cedar ( | 97.44 | |
| d1pcla_ | 355 | Pectate lyase {Erwinia chrysanthemi, type E [TaxId | 97.37 | |
| d1bn8a_ | 399 | Pectate lyase {Bacillus subtilis [TaxId: 1423]} | 97.23 | |
| d1pe9a_ | 361 | Pectate lyase {Erwinia chrysanthemi, type A [TaxId | 97.23 | |
| d1bn8a_ | 399 | Pectate lyase {Bacillus subtilis [TaxId: 1423]} | 97.23 | |
| d1qjva_ | 342 | Pectin methylesterase PemA {Erwinia chrysanthemi [ | 97.21 | |
| d1gq8a_ | 319 | Pectin methylesterase PemA {Carrot (Daucus carota) | 97.06 | |
| d1pcla_ | 355 | Pectate lyase {Erwinia chrysanthemi, type E [TaxId | 96.59 | |
| d1pe9a_ | 361 | Pectate lyase {Erwinia chrysanthemi, type A [TaxId | 93.24 | |
| d1h80a_ | 464 | iota-carrageenase {Alteromonas sp., atcc 43554 [Ta | 92.41 | |
| d1ee6a_ | 197 | Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: | 91.81 | |
| d1ee6a_ | 197 | Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: | 88.09 | |
| d1ofla_ | 481 | Chondroitinase B {Pedobacter heparinus [TaxId: 984 | 82.74 | |
| d1ru4a_ | 400 | Pectate transeliminase {Erwinia chrysanthemi [TaxI | 81.03 |
| >d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Erwinia carotovora, subsp. carotovora [TaxId: 554]
Probab=100.00 E-value=2.9e-62 Score=492.20 Aligned_cols=340 Identities=22% Similarity=0.354 Sum_probs=296.2
Q ss_pred CCCchHHHHHHHHHHhhccccCCCcEEEecCCc---eeeeeeEeccceEEEeccCcEEEecCCCCCCCcCCCCCCCCccc
Q 012788 52 GKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGK---WLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGI 128 (456)
Q Consensus 52 G~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~---Yl~g~l~L~s~~tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~ 128 (456)
+.+|||+|||+||++| ++|++|+||+|+ |++|+|.|+|+++|+|++||+|+++.+.++|+..+ ....+.
T Consensus 21 ~~~~~T~aIq~AIdac-----~~Gg~V~iP~G~~~vyltg~i~LkSnv~L~l~~ga~L~~s~d~~~y~~~~---~~~~~~ 92 (376)
T d1bhea_ 21 DSSTATSTIQKALNNC-----DQGKAVRLSAGSTSVFLSGPLSLPSGVSLLIDKGVTLRAVNNAKSFENAP---SSCGVV 92 (376)
T ss_dssp CSSBCHHHHHHHHTTC-----CTTCEEEEECSSSSEEEESCEECCTTCEEEECTTCEEEECSCSGGGBSST---TCSSCE
T ss_pred CCChhHHHHHHHHHHC-----CCCCEEEEcCCCcceEEEecEEECCCCEEEEeCCEEEEEcCCHHHccccc---ceeeeE
Confidence 6789999999999987 358899999998 88999999999999999999999999999997543 222233
Q ss_pred ccCCCcceeeEEEeeeeeEEEeccCceeeCCCcccccccc-----------cCCCCCCCCeeEEEEeeccEEEEeEEEEe
Q 012788 129 ELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFS-----------SQSLNYSRPHLVEFISSENVVVSNLTFLN 197 (456)
Q Consensus 129 ~~~~~~~~~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~-----------~~~~~~~rp~~i~~~~~~nv~I~~v~i~n 197 (456)
+..+..+.+||.+.+++||+|+|. |+|||+|..||.... .......||++|.|.+|+|++|+|++|+|
T Consensus 93 ~~~~~~~~~~i~~~~~~Ni~ItG~-G~IDG~G~~~~~~~~~~~~~~~~~~~~~~~~~~rP~~i~~~~~~nv~i~~iti~n 171 (376)
T d1bhea_ 93 DKNGKGCDAFITAVSTTNSGIYGP-GTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLIN 171 (376)
T ss_dssp ESCSCCBCCSEEEESCBSCEEECS-SEEECCTTSCCSSSSSCTTHHHHHHHHHTCEECCCCSEEEESCEEEEEEEEEEEC
T ss_pred eccCcccceeEEecCcceEEEEeC-cEEecccceeecCCccchhccccccccccCCCCCCeEEEEEecccEEEEeeEEec
Confidence 334455678999999999999997 999999975433221 11234579999999999999999999999
Q ss_pred CCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEE
Q 012788 198 APAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRV 277 (456)
Q Consensus 198 s~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~ 277 (456)
++.|++++..|++++|+|++|.++...+|+|||++.+|+||+|+||+|+++||||++|++.+ ..+++||+|+||
T Consensus 172 s~~~~~~~~~~~~v~i~n~~I~~~~~~~NtDGidi~~s~nv~I~n~~i~~gDD~i~~ks~~~------~~~~~ni~i~n~ 245 (376)
T d1bhea_ 172 SPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKG------RAETRNISILHN 245 (376)
T ss_dssp CSSCSEEEESCEEEEEEEEEEECCTTCSSCCSEEEESCEEEEEESCEEECSSCSEEEEECTT------SCCEEEEEEEEE
T ss_pred CCceEEEEeCCceEEEEeEeccCCccCCCcceeeccccceEEEEeceeecCCCceeeecccC------CCCcceEEEEee
Confidence 99999999999999999999999888899999999999999999999999999999999743 246899999999
Q ss_pred EEecCCCCeeEecccccCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCcceeEEEeccCCCCCCCCC
Q 012788 278 LLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDF 357 (456)
Q Consensus 278 ~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~ 357 (456)
+|.. ++|++||++. .+++||+|+||+|.++..|++||++++++|.|+||+|+|++|+++++||.|++.|....
T Consensus 246 ~~~~--~~g~~iGs~~-~~v~nv~i~n~~~~~~~~g~~Iks~~~~gG~v~nI~f~ni~~~~v~~pi~i~~~y~~~~---- 318 (376)
T d1bhea_ 246 DFGT--GHGMSIGSET-MGVYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNVAKPIVIDTVYEKKE---- 318 (376)
T ss_dssp EECS--SSCEEEEEEE-SSEEEEEEEEEEEESCSEEEEEECCTTTCCEEEEEEEEEEEEESCSEEEEEETTSSCCC----
T ss_pred EEec--CCCceecccc-CCEEEEEEEeeeEcCCCceEEEEecCCCccEEEEEEEEeEEEeccCccEEEEeecCCCC----
Confidence 9985 7899999985 46999999999999999999999999889999999999999999999999999887532
Q ss_pred CCCCCCeEEEEEEEEEEeeccceeEEEEeeCCCCeeeEEEEeEEEEeCCCCCCcceeeeeee
Q 012788 358 DPDALPAIDQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHG 419 (456)
Q Consensus 358 ~~~~~~~i~nIt~~nI~~~~~~~~~~~~g~~~~~~~~I~~~nv~i~~~~~~~~~~~c~~v~g 419 (456)
+...|.|+||+|+||+++.. .++.+.|.++.+|+||+|+||+++.+ ..+.|+|+.-
T Consensus 319 -~~~~~~i~nIt~~Ni~~~~~-~~~~l~g~~~~~~~~v~~~nv~i~~~----~~~~~~nv~~ 374 (376)
T d1bhea_ 319 -GSNVPDWSDITFKDVTSETK-GVVVLNGENAKKPIEVTMKNVKLTSD----STWQIKNVNV 374 (376)
T ss_dssp -CCCCCEEEEEEEEEEEECSC-CEEEEECTTCSSCEEEEEEEEECCTT----CEEEEESEEE
T ss_pred -CCCCCEEeeEEEEeEEEecc-eeEEEEcCCCCCceeEEEEeEEEEcC----CCCEEEeeee
Confidence 23457899999999999865 47889999999999999999999754 3689999864
|
| >d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Rhamnogalacturonase A species: Aspergillus aculeatus [TaxId: 5053]
Probab=100.00 E-value=1e-61 Score=493.56 Aligned_cols=336 Identities=17% Similarity=0.245 Sum_probs=292.4
Q ss_pred CCceEEEeecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCCceeee-eeEeccceEEEeccCcEEEecCCCCCC
Q 012788 37 RPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTG-SFNLTSHLTLFLEKGAVILGSQNPSHW 115 (456)
Q Consensus 37 ~~~~~~v~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g-~l~L~s~~tL~l~~ga~i~~~~~~~~~ 115 (456)
+.++|||+||||+|||++|||+|||+||++| ++|++|+||+|+|++. +|.|+++..+.++..++|.+..+...|
T Consensus 17 ~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~ac-----~~gg~V~iP~Gty~l~~~i~l~g~~~~~l~~~G~i~~~~~~~~~ 91 (422)
T d1rmga_ 17 ATKTCNILSYGAVADNSTDVGPAITSAWAAC-----KSGGLVYIPSGNYALNTWVTLTGGSATAIQLDGIIYRTGTASGN 91 (422)
T ss_dssp HHCEEEGGGGTCCCSSSSBCHHHHHHHHHHH-----TBTCEEEECSSEEEECSCEEEESCEEEEEEECSEEEECCCCSSE
T ss_pred CCcEEEEecCCCCCCCCccCHHHHHHHHHhc-----CCCCEEEECCCcEEEeCcEEEcCCCceEEEEeEEEEeccCCccC
Confidence 3579999999999999999999999999876 4578999999999776 699987777777777899887654333
Q ss_pred CcCCCCCCCCcccccCCCcceeeEEEeeeeeEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEE
Q 012788 116 DVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTF 195 (456)
Q Consensus 116 ~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i 195 (456)
. ..+....+.+.+.+.|. |+|||+|..||.. ...+|++|+|.+|+|++|+++++
T Consensus 92 ~-------------------~~~~~~~~~~~~~~~g~-G~IdG~G~~~~~~------~~~~p~~l~~~~~~n~~i~git~ 145 (422)
T d1rmga_ 92 M-------------------IAVTDTTDFELFSSTSK-GAVQGFGYVYHAE------GTYGARILRLTDVTHFSVHDIIL 145 (422)
T ss_dssp E-------------------EEEEEEEEEEEECSSSC-CEEECCTHHHHTT------TCCCCEEEEEEEEEEEEEEEEEE
T ss_pred E-------------------EEeccCccEEEEEeecc-eEEecCcceecCC------CCCCCcEEEEEeeeeeEEECcEe
Confidence 2 24555566777788886 9999999999974 34579999999999999999999
Q ss_pred EeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEE
Q 012788 196 LNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIR 275 (456)
Q Consensus 196 ~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~ 275 (456)
+|++.||+++..|++++|+|++|.++ ..+|+||||+.+ +||+|+||+|.++||||+++++ ++||+|+
T Consensus 146 ~nsp~~~i~i~~c~~v~i~nv~I~~~-~~~NtDGIdi~~-snv~I~n~~i~~gDDcIaiks~-----------s~nI~i~ 212 (422)
T d1rmga_ 146 VDAPAFHFTMDTCSDGEVYNMAIRGG-NEGGLDGIDVWG-SNIWVHDVEVTNKDECVTVKSP-----------ANNILVE 212 (422)
T ss_dssp ECCSSCSEEEEEEEEEEEEEEEEECC-SSTTCCSEEEEE-EEEEEEEEEEESSSEEEEEEEE-----------EEEEEEE
T ss_pred cCCCceEEEEeccccEEEEeeEEcCC-CCCccceEeecc-cEEEEEeeEEEcCCCccccCCC-----------CccEEEE
Confidence 99999999999999999999999986 467999999975 5899999999999999999996 9999999
Q ss_pred EEEEecCCCCeeEecccc-cCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCcceeEEEeccCCCCCC
Q 012788 276 RVLLQSSSGSSVAFGSEM-SGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVAFGACGNCGSHPD 354 (456)
Q Consensus 276 n~~~~~~~~~gi~igs~~-~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~ 354 (456)
|++|.. +||++|||+. ...|+||+|+||++.++..|++||++. +.|+|+||+|+||+|+++++||.|++.|++...
T Consensus 213 n~~c~~--g~GisiGs~g~~~~V~nV~v~n~~~~~s~~g~~ik~~~-g~G~V~nI~f~Ni~~~nv~~pI~Id~~y~~~~~ 289 (422)
T d1rmga_ 213 SIYCNW--SGGCAMGSLGADTDVTDIVYRNVYTWSSNQMYMIKSNG-GSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTA 289 (422)
T ss_dssp EEEEES--SSEEEEEEECTTEEEEEEEEEEEEEESSSCSEEEEEBB-CCEEEEEEEEEEEEEEEESCSEEEETBCTTSCC
T ss_pred eeEEcc--ccceeEeeccCCCCEEEEEEEeEEEeCCCceEEEEEcC-CCceecceEEEEEEEecccccEEEecccCCCCC
Confidence 999984 7999999974 457999999999999999999999975 458999999999999999999999999987443
Q ss_pred CCCCCCCCCeEEEEEEEEEEeecc----ceeEEEEeeCCCCeeeEEEEeEEEEeCCCCCCcceeeeeeeccc
Q 012788 355 DDFDPDALPAIDQITFKDIIGTNI----TIAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGSSE 422 (456)
Q Consensus 355 ~~~~~~~~~~i~nIt~~nI~~~~~----~~~~~~~g~~~~~~~~I~~~nv~i~~~~~~~~~~~c~~v~g~~~ 422 (456)
. .+++ ..|+||+|+||+++.. ..++.|.|+++.||+||+|+||+|+.+.++...+.|+|++|...
T Consensus 290 ~--~~~~-v~isnIt~~Ni~GT~~~~~~~~~i~l~Cs~~~pc~ni~l~ni~l~~~~g~~~~~~C~na~G~~~ 358 (422)
T d1rmga_ 290 V--AGDG-VQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELYLCRSAYGSGY 358 (422)
T ss_dssp B--SSSC-CEEEEEEEEEEEEEESCTTTSCSEEEECBTTBCEEEEEEEEEEEEESSSSCEEEEEESEEEEST
T ss_pred C--CCCC-eEEEEEEEEeEEEEecCCcccccEEEEcCCCCCCcceEEEEEEEEcCCCCCcceEEECceeeEE
Confidence 2 2334 4899999999999864 34789999999999999999999999888777899999998543
|
| >d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Fungus (Aspergillus aculeatus) [TaxId: 5053]
Probab=100.00 E-value=5.6e-57 Score=444.65 Aligned_cols=318 Identities=18% Similarity=0.260 Sum_probs=260.6
Q ss_pred CCchHHHHHHHHHHhhccccCCCcEEEecCCceeeeeeEeccceEEEeccCcEEEecCCCCCCCcCCCCCCCCcccccCC
Q 012788 53 KTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPG 132 (456)
Q Consensus 53 ~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~l~L~s~~tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~~ 132 (456)
.+||++||++|+++| +..++++|+||+|+|+.-. .|+++.+|.++. ...+ +...|.
T Consensus 8 g~d~~~~i~~a~~~C---~~~~~~~v~vPaG~~l~l~-~l~~g~~v~~~g--~~~~--~~~~~~---------------- 63 (339)
T d1ia5a_ 8 GSNGASSASKSKTSC---STIVLSNVAVPSGTTLDLT-KLNDGTHVIFSG--ETTF--GYKEWS---------------- 63 (339)
T ss_dssp GGGHHHHHHHHGGGC---SEEEEESCEECTTCCEEEC-SCCTTCEEEEES--EEEE--CCCCSC----------------
T ss_pred CcccHHHHHHHHHhC---cCCCCCeEEECCCCeEeee-ccCCCCEEEeeC--Cccc--ccCCcc----------------
Confidence 479999999999988 5678899999999975110 233445554431 1111 111221
Q ss_pred CcceeeEEEeeeeeEEEeccC-ceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEEeCCcceEEeecccce
Q 012788 133 RRYKSLINGYMLRDVVVTGDN-GTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNV 211 (456)
Q Consensus 133 ~~~~~~i~~~~~~ni~I~G~~-GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv 211 (456)
.+++.. ..+||+|+|.+ |+|||+|+.||+..... ....||++|.|.+|+|++|+|++++|+|+|++++..|++|
T Consensus 64 ---g~l~~~-~g~ni~i~G~g~g~IDG~G~~wW~~~~~~-~~~~rP~~l~~~~~~nv~i~gitl~nsp~w~~~~~~s~nv 138 (339)
T d1ia5a_ 64 ---GPLISV-SGSDLTITGASGHSINGDGSRWWDGEGGN-GGKTKPKFFAAHSLTNSVISGLKIVNSPVQVFSVAGSDYL 138 (339)
T ss_dssp ---CCSEEE-EEESCEEEECTTCEEECCGGGTCSSCTTT-SSSCCCCCEEEEEEEEEEEESCEEECCSSCCEEEESCEEE
T ss_pred ---CCeEEE-EeeeEEEEecCCCeEeCCchhhhhcccCC-CCCCCCeEEEEEecCCCEEeceEEEcCCceEEEEecccEE
Confidence 134443 45899999971 39999999999865433 3567999999999999999999999999999999999999
Q ss_pred EEEEEEEECCC----CCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCee
Q 012788 212 HIQNISVHAPP----ESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSV 287 (456)
Q Consensus 212 ~i~n~~i~~~~----~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi 287 (456)
+|+|++|.++. .++|+||||+.+|+||+|+||+|.++||||++|+ .+||+|+||+|.. +||+
T Consensus 139 ~i~~v~I~~~~~~~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIaiks------------~~ni~i~n~~c~~--ghG~ 204 (339)
T d1ia5a_ 139 TLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNS------------GENIYFSGGYCSG--GHGL 204 (339)
T ss_dssp EEESCEEECGGGTTTTCCSCCSEEEESCEEEEEESCEEECSSCSEEESS------------EEEEEEESCEEES--SSCE
T ss_pred EEEEEEEecccCCccCCCCCCccccCCCCeEEEeeeEEEcCCCeEEecC------------ccEEEEEEeEEec--cccc
Confidence 99999999863 4689999999999999999999999999999998 5899999999985 7888
Q ss_pred Eecc---cccCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCc-ceeEEEeccCCCCCCCCCCCCCCC
Q 012788 288 AFGS---EMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNI-NVAFGACGNCGSHPDDDFDPDALP 363 (456)
Q Consensus 288 ~igs---~~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~-~~~i~i~~~y~~~~~~~~~~~~~~ 363 (456)
+|++ +..+.|+||+|+||+|.++.+|+|||++++++|+|+||+|+||+|+++ ++||.|+++|++.... +...+
T Consensus 205 sigslG~~~~~~v~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nV~f~ni~~~~v~~~pI~I~~~Y~~~~~~---~~~~v 281 (339)
T d1ia5a_ 205 SIGSVGGRSDNTVKNVTFVDSTIINSDNGVRIKTNIDTTGSVSDVTYKDITLTSIAKYGIVVQQNYGDTSST---PTTGV 281 (339)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEEESCSEEEEEEEETTCCCEEEEEEEEEEEEEEESSEEEEEEEEETCTTSC---CCSSS
T ss_pred eecccccCccccEEEEEEECCcccCCcceeEEeeeCCCCEEEEEEEEEEEEEeccccccEEEEeecCCCCCC---CCCCc
Confidence 7654 556789999999999999999999999999999999999999999998 5899999999864322 33345
Q ss_pred eEEEEEEEEEEeeccc-eeEEEEeeCCCCeeeEEEEeEEEEeCCCCCCcceeeeeee
Q 012788 364 AIDQITFKDIIGTNIT-IAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHG 419 (456)
Q Consensus 364 ~i~nIt~~nI~~~~~~-~~~~~~g~~~~~~~~I~~~nv~i~~~~~~~~~~~c~~v~g 419 (456)
.|+||+|+||+++... .+..+.|.++.||+||+|+||++++. +..+.|+|+.+
T Consensus 282 ~i~nI~~~Ni~gt~~~~~~~~~~~~~~~p~~ni~~~nV~itg~---~~~~~C~nv~~ 335 (339)
T d1ia5a_ 282 PITDFVLDNVHGSVVSSGTNILISCGSGSCSDWTWTDVSVSGG---KTSSKCTNVPS 335 (339)
T ss_dssp CEEEEEEEEEEEEECTTSEEEEEECCTTCEEEEEEEEEEEESS---BCCSCCBSCCT
T ss_pred EEEeEEEEeEEEEecccCceEEEeCCCCCEeceEEEeEEEcCC---CcceEeECCCc
Confidence 8999999999998765 45667899999999999999999743 34677888865
|
| >d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]
Probab=100.00 E-value=1.1e-56 Score=443.39 Aligned_cols=322 Identities=16% Similarity=0.209 Sum_probs=267.2
Q ss_pred CCCCchHHHHHHHHHHhhccccCCCcEEEecCCceeeeeeEeccceEEEeccCcEEEecCCCCCCCcCCCCCCCCccccc
Q 012788 51 DGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIEL 130 (456)
Q Consensus 51 DG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~l~L~s~~tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~ 130 (456)
||.||+|+||.+|+.+|| +..++++|+||+|+|+..+ .|+++++|.++ +++.+. .+.|..
T Consensus 1 dg~t~~t~a~~~a~~~aC--~~~~~~~v~VP~G~~l~l~-~l~~g~~~~~~--g~~~~~--~~~w~~------------- 60 (335)
T d1czfa_ 1 DSCTFTTAAAAKAGKAKC--STITLNNIEVPAGTTLDLT-GLTSGTKVIFE--GTTTFQ--YEEWAG------------- 60 (335)
T ss_dssp CEEEESSHHHHHHHGGGC--SEEEEESCEECTTCCEEEC-SCCTTCEEEEE--SEEEEC--CCCSCC-------------
T ss_pred CCcccchHHHHHHHHHHC--CCCCCCeEEECCCCEEecc-cCCCCCEEEEE--eEEecc--cccCCC-------------
Confidence 789999999999988875 4567899999999987432 15678888886 455553 233421
Q ss_pred CCCcceeeEEEeeeeeEEEeccC-ceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEEeCCcceEEeeccc
Q 012788 131 PGRRYKSLINGYMLRDVVVTGDN-GTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCS 209 (456)
Q Consensus 131 ~~~~~~~~i~~~~~~ni~I~G~~-GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~ 209 (456)
++ .....+||+|+|.+ |+|||+|+.||+.... ....||+++.|.+|+|++|++++++|+|+|++++ .|+
T Consensus 61 ------~~-~~~~~~ni~i~G~g~g~IDG~G~~ww~~~~~--~~~~rP~~~~~~~~~nv~i~gi~~~nsp~w~~~i-~~~ 130 (335)
T d1czfa_ 61 ------PL-ISMSGEHITVTGASGHLINCDGARWWDGKGT--SGKKKPKFFYAHGLDSSSITGLNIKNTPLMAFSV-QAN 130 (335)
T ss_dssp ------CS-EEEEEESCEEEECTTCEEECCGGGTCCSCTT--SSSCCCCCEEEEEEETEEEESCEEECCSSCCEEE-ECS
T ss_pred ------CE-EEEecceEEEEeCCCCEEcCCCHHHhccCCC--CCCCCceEEEEecceEEEEEeeEEEcCCceEEEE-eee
Confidence 22 33457999999961 3999999999986443 3467999999999999999999999999999997 699
Q ss_pred ceEEEEEEEECC----CCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCC
Q 012788 210 NVHIQNISVHAP----PESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGS 285 (456)
Q Consensus 210 nv~i~n~~i~~~----~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~ 285 (456)
|++|+|++|.++ ..++|+||||+.+|+||+|+||+|.++||||++|+ .+||+|+||+|.. +|
T Consensus 131 nv~i~~i~I~~~~~~~~~~~NtDGidi~~s~nV~I~n~~i~tgDDcIaiks------------~~ni~i~n~~c~~--~h 196 (335)
T d1czfa_ 131 DITFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHNQDDCLAVNS------------GENIWFTGGTCIG--GH 196 (335)
T ss_dssp SEEEESCEEECGGGGTTTCCSCCSEEECSCEEEEEESCEEECSSCSEEESS------------EEEEEEESCEEES--SC
T ss_pred eEEEEeEEEECcCCCcCccCCCCceEecCCCeEEEEeeEEecCCceEEecC------------ceEEEEEEEEEEC--CC
Confidence 999999999985 34789999999999999999999999999999998 5899999999986 68
Q ss_pred eeEec---ccccCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCcce-eEEEeccCCCCCCCCCCCCC
Q 012788 286 SVAFG---SEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINV-AFGACGNCGSHPDDDFDPDA 361 (456)
Q Consensus 286 gi~ig---s~~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~-~i~i~~~y~~~~~~~~~~~~ 361 (456)
|++++ +++.++|+||+|+||+|.++.+|+|||+|++++|.|+||+|+||+|+++.. ||.|++.|++...+.. +..
T Consensus 197 G~sigslG~~~~~~v~nV~v~n~~i~~t~~g~rIKt~~g~~G~v~nI~~~ni~m~~v~~~pi~i~~~y~~~~~~~~-~~s 275 (335)
T d1czfa_ 197 GLSIGSVGDRSNNVVKNVTIEHSTVSNSENAVRIKTISGATGSVSEITYSNIVMSGISDYGVVIQQDYEDGKPTGK-PTN 275 (335)
T ss_dssp CEEEEEECSSSCCEEEEEEEEEEEEEEEEEEEEEEEETTCCEEEEEEEEEEEEEEEEEEEEEEEEEEEETTEECSC-CCS
T ss_pred CccccccCCCCcCCEeEEEEEeeEEECCCccceEeccCCCCccEeEEEEEeEEEcCccccCEEEEeeccCCCCCCC-CCC
Confidence 87764 456778999999999999999999999999999999999999999999975 9999999986443333 333
Q ss_pred CCeEEEEEEEEEEeeccc-eeEEEEeeCCCCeeeEEEEeEEEEeCCCCCCcceeeeeeec
Q 012788 362 LPAIDQITFKDIIGTNIT-IAGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHGS 420 (456)
Q Consensus 362 ~~~i~nIt~~nI~~~~~~-~~~~~~g~~~~~~~~I~~~nv~i~~~~~~~~~~~c~~v~g~ 420 (456)
.+.|+||+|+||+++... .+..+.|.++.||+||+|+||+|++.+ +...|.|+.+.
T Consensus 276 ~~~i~nI~~~Ni~gt~~~~~~~~~~~~~~~p~~ni~~~nV~i~g~~---~~~~C~nv~~~ 332 (335)
T d1czfa_ 276 GVTIQDVKLESVTGSVDSGATEIYLLCGSGSCSDWTWDDVKVTGGK---KSTACKNFPSV 332 (335)
T ss_dssp SEEEEEEEEEEEEEEECTTSEEEEEECCTTTEEEEEEEEEEEESSB---CCSCCBSCCTT
T ss_pred CcEEeeEEEEeEEEEeccCceeEEEeCCCCCeeeeEEEeEEEeCCC---cceEeECCCcc
Confidence 358999999999999765 355567778889999999999998533 35678888653
|
| >d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Fusarium moniliforme [TaxId: 117187]
Probab=100.00 E-value=1.9e-55 Score=437.33 Aligned_cols=309 Identities=19% Similarity=0.235 Sum_probs=259.1
Q ss_pred chHHHHHHHHHHhhccccCCCcEEEecCCceeeeeeEeccceEEEeccCcEEEecCCCCCCCcCCCCCCCCcccccCCCc
Q 012788 55 LNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRR 134 (456)
Q Consensus 55 ddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~l~L~s~~tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 134 (456)
+|++|||+||++| ++.++++|+||+|+|+... .|+++++|.|+ |++ ++......|.
T Consensus 6 ~d~~ai~~ai~~C---~~~~~~~v~vPaG~~l~~~-~l~~~~tl~~~-g~~-~~~~~~~~~~------------------ 61 (349)
T d1hg8a_ 6 TEYSGLATAVSSC---KNIVLNGFQVPTGKQLDLS-SLQNDSTVTFK-GTT-TFATTADNDF------------------ 61 (349)
T ss_dssp SSGGGHHHHHHHC---SEEEECCCEECTTCCEEET-TCCTTCEEEEC-SEE-EECCCCCTTC------------------
T ss_pred CCHHHHHHHHHHc---cCCCCCeEEECCCceEeCC-CCCCCCEEEEE-eeE-EeeccccccC------------------
Confidence 6889999999998 5678899999999987543 36788999986 444 4433322221
Q ss_pred ceeeEEEeeeeeEEEeccCc--eeeCCCcccccccccCCC--CCCCCeeEEEEeeccEEEEeEEEEeCCcceEEeecccc
Q 012788 135 YKSLINGYMLRDVVVTGDNG--TIDGQGSVWWDWFSSQSL--NYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSN 210 (456)
Q Consensus 135 ~~~~i~~~~~~ni~I~G~~G--tidG~g~~ww~~~~~~~~--~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~n 210 (456)
+++ ..+.+||+|+|+ | +|||+|+.||+....... ...||.++.+..|+|++|++++++|+|+|++++.+|++
T Consensus 62 --~~~-~~~~~ni~I~G~-G~g~IDG~G~~ww~~~~~~~~~~~~p~p~~i~~~~~~nv~i~~i~l~nsp~w~~~~~~~~n 137 (349)
T d1hg8a_ 62 --NPI-VISGSNITITGA-SGHVIDGNGQAYWDGKGSNSNSNQKPDHFIVVQKTTGNSKITNLNIQNWPVHCFDITGSSQ 137 (349)
T ss_dssp --CSE-EEEEESCEEEEC-TTCEEECCGGGTCCSCTTCTTSCCCCSEEEEEEEEESSEEEESCEEECCSSEEEEEESCEE
T ss_pred --CeE-EEeeeeEEEEec-CCCEEeCCChHHhcccccCCCCCCCCcceEEEEeccCCeEEEeeEEeCCCceEEEEeccce
Confidence 111 246789999996 5 999999999987654333 33466789999999999999999999999999999999
Q ss_pred eEEEEEEEECCC------------CCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEE
Q 012788 211 VHIQNISVHAPP------------ESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVL 278 (456)
Q Consensus 211 v~i~n~~i~~~~------------~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~ 278 (456)
++|+|++|.++. ..+|+||||+.+|+||+|+||+|.++||||++|+ .+||+|+||+
T Consensus 138 v~i~~i~I~~~~~~~~~~~~~~~~~~~NtDGiDi~~s~nv~I~n~~i~~gDD~iaik~------------~~ni~i~n~~ 205 (349)
T d1hg8a_ 138 LTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYNQDDCVAVTS------------GTNIVVSNMY 205 (349)
T ss_dssp EEEEEEEEECGGGSSCCTTTTTSCSCCSCCSEEEESCEEEEEEEEEEECSSCSEEESS------------EEEEEEEEEE
T ss_pred EEEEEEEEECCCcccccccccCccccCCCCeEeeCCCCeEEEEeeeecCCCCceEecc------------ccceEEEEEE
Confidence 999999998843 4789999999999999999999999999999998 6899999999
Q ss_pred EecCCCCeeEe---cccccCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCcce-eEEEeccCCCCCC
Q 012788 279 LQSSSGSSVAF---GSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINV-AFGACGNCGSHPD 354 (456)
Q Consensus 279 ~~~~~~~gi~i---gs~~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~-~i~i~~~y~~~~~ 354 (456)
|.. +||+++ |++..+.|+||+|+||+|.++.+|+|||++.+++|.|+||+|+|++|++++. ||.|++.|+....
T Consensus 206 ~~~--ghg~sigs~G~~~~~~v~nV~v~n~~~~~~~~g~rIKs~~g~gG~v~nI~~~ni~~~~v~~~pI~i~~~y~~~~~ 283 (349)
T d1hg8a_ 206 CSG--GHGLSIGSVGGKSDNVVDGVQFLSSQVVNSQNGCRIKSNSGATGTINNVTYQNIALTNISTYGVDVQQDYLNGGP 283 (349)
T ss_dssp EES--SCCEEEEEESSSSCCEEEEEEEEEEEEEEEEEEEEEEEETTCCEEEEEEEEEEEEEEEEEEEEEEEEEEECSSSB
T ss_pred EeC--CcccccccCCCcccccEEEEEEEcceecCCcceEEEEEEcCCCccEEEeEEEEEEEcCcccccEEEEeeccCCCC
Confidence 986 688775 5566778999999999999999999999999999999999999999999975 9999999986443
Q ss_pred CCCCCCCCCeEEEEEEEEEEeeccc-eeEEEEeeCCCCeeeEEEEeEEEEeCC
Q 012788 355 DDFDPDALPAIDQITFKDIIGTNIT-IAGNFTGIQEAPFANICLSNISLSINP 406 (456)
Q Consensus 355 ~~~~~~~~~~i~nIt~~nI~~~~~~-~~~~~~g~~~~~~~~I~~~nv~i~~~~ 406 (456)
.. .+...+.|+||+|+||+++... .+..+.|.++.||+||+|+||+|++.+
T Consensus 284 ~~-~~~~~v~i~nIt~~nItgt~~~~~~~~~~~~~~~p~~ni~~~nV~i~g~~ 335 (349)
T d1hg8a_ 284 TG-KPTNGVKISNIKFIKVTGTVASSAQDWFILCGDGSCSGFTFSGNAITGGG 335 (349)
T ss_dssp CS-CCCSSEEEEEEEEEEEEEEECTTSEEEEEECCSSCEEEEEEESCEEECCS
T ss_pred CC-CCCCCcEEEEEEEEEEEEEecCCCcEEEEeCCCCcEeCeEEEeEEEECCC
Confidence 32 2333358999999999999765 567789999999999999999998654
|
| >d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]
Probab=100.00 E-value=1.3e-55 Score=434.82 Aligned_cols=317 Identities=19% Similarity=0.255 Sum_probs=261.6
Q ss_pred chHHHHHHHHHHhhccccCCCcEEEecCCceeeeeeEeccceEEEeccCcEEEecCCCCCCCcCCCCCCCCcccccCCCc
Q 012788 55 LNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRR 134 (456)
Q Consensus 55 ddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~l~L~s~~tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 134 (456)
+|++|||+||++| +..++++|+||+|+|+... .|+.+.+|.++ +++.+. +..|.
T Consensus 6 ~~~~~i~~ai~~C---~~~~~~~v~VP~G~~l~l~-~~~~g~~v~~~--g~~~~~--~~~~~------------------ 59 (336)
T d1nhca_ 6 TSASEASESISSC---SDVVLSSIEVPAGETLDLS-DAADGSTITFE--GTTSFG--YKEWK------------------ 59 (336)
T ss_dssp SSHHHHHHHGGGC---SEEEEESCEECTTCCEECT-TCCTTCEEEEE--SEEEEC--CCCSC------------------
T ss_pred CcHHHHHHHHHHC---cCCCCCeEEECCCCeEeCC-CCCCCCEEEEE--EEEecc--ccccc------------------
Confidence 6899999999988 5678899999999986422 23456777776 455542 33443
Q ss_pred ceeeEEEeeee-eEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEEeCCcceEEeecccceEE
Q 012788 135 YKSLINGYMLR-DVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHI 213 (456)
Q Consensus 135 ~~~~i~~~~~~-ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i 213 (456)
.+|+.+.+.+ +|++.|. |+|||+|+.||+..... ....||++|.|.+|+|++|+|++++|+|+|++++ .|+|++|
T Consensus 60 -g~~~~~~g~~~~i~~~G~-G~IDG~G~~ww~~~~~~-~~~~rP~~i~~~~~~nv~i~giti~nsp~~~i~i-~~~nv~i 135 (336)
T d1nhca_ 60 -GPLIRFGGKDLTVTMADG-AVIDGDGSRWWDSKGTN-GGKTKPKFMYIHDVEDSTFKGINIKNTPVQAISV-QATNVHL 135 (336)
T ss_dssp -CCSEECCEESCEEEECTT-CEEECCGGGTCCSCTTT-SSSCCCCCEEEEEEEEEEEESCEEECCSSCCEEE-EEEEEEE
T ss_pred -CceEEEEEEEEEEEEeCC-eEEeCCcHHHhcccccC-CCCCCCeEEEEeccCCcEEEeEEEEcCCceEEEE-eeeEEEE
Confidence 1355555555 6888896 99999999999864432 3467999999999999999999999999999997 6999999
Q ss_pred EEEEEECCC----CCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEe
Q 012788 214 QNISVHAPP----ESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAF 289 (456)
Q Consensus 214 ~n~~i~~~~----~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~i 289 (456)
+|++|.++. ..+|+||||+.+|+||+|+||+|.++||||++|+ .+||+|+|++|.. ++|+++
T Consensus 136 ~nv~I~~~~~~~~~~~NtDGidi~~s~nv~I~n~~i~~gDDcIaik~------------g~ni~i~n~~c~~--~~g~si 201 (336)
T d1nhca_ 136 NDFTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKNQDDCIAINS------------GESISFTGGTCSG--GHGLSI 201 (336)
T ss_dssp ESCEEECTTHHHHTCCSCCSEEECSCEEEEEESCEEESSSEEEEESS------------EEEEEEESCEEES--SSEEEE
T ss_pred EEEEEECcCCCccccCCCceEEcCCccCEeEecceEeecCCcEEeec------------cceEEEEEeeecc--ccccee
Confidence 999999974 3689999999999999999999999999999998 5899999999985 788887
Q ss_pred cc---cccCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCcc-eeEEEeccCCCCCCCCCCCCCCCeE
Q 012788 290 GS---EMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNIN-VAFGACGNCGSHPDDDFDPDALPAI 365 (456)
Q Consensus 290 gs---~~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~-~~i~i~~~y~~~~~~~~~~~~~~~i 365 (456)
++ +..+.|+||+|+||+|.++.+|+|||+|.+++|.|+||+|+||+|+++. +||.|++.|.........+++ .+|
T Consensus 202 gslG~~~~~~v~nV~v~n~~~~~t~~G~rIKt~~~~~G~v~nV~f~ni~~~~V~~~pi~I~~~Y~~~~~~~~~~~~-v~I 280 (336)
T d1nhca_ 202 GSVGGRDDNTVKNVTISDSTVSNSANGVRIKTIYKETGDVSEITYSNIQLSGITDYGIVIEQDYENGSPTGTPSTG-IPI 280 (336)
T ss_dssp EEESSSSCCEEEEEEEEEEEEESCSEEEEEEEETTCCCEEEEEEEEEEEEEEESSEEEEEEEEEETTEECSCCCSS-SCE
T ss_pred eeccccccccEEEEEEEeceeeCCCceeEEEEecCCCceEeeEEEEeEEEeccccccEEEEeeccCCCCcCCCCCC-eeE
Confidence 65 4567899999999999999999999999999999999999999999985 699999999764333333333 479
Q ss_pred EEEEEEEEEeeccce-eEEEEeeCCCCeeeEEEEeEEEEeCCCCCCcceeeeeee
Q 012788 366 DQITFKDIIGTNITI-AGNFTGIQEAPFANICLSNISLSINPGSYNSWECSNIHG 419 (456)
Q Consensus 366 ~nIt~~nI~~~~~~~-~~~~~g~~~~~~~~I~~~nv~i~~~~~~~~~~~c~~v~g 419 (456)
+||+|+||+++.... +..+.+.++.||+||+|+||+|++. +..+.|+|+.+
T Consensus 281 ~nIt~~ni~gt~~~~~~~~~~~~~~~~~~ni~l~nV~itgg---~~~~~c~nv~~ 332 (336)
T d1nhca_ 281 TDVTVDGVTGTLEDDATQVYILCGDGSCSDWTWSGVDLSGG---KTSDKCENVPS 332 (336)
T ss_dssp EEEEEEEEEEEECTTCEEEEEECCTTCEEEEEEEEEEEESS---BCCSCCBSCCT
T ss_pred EeEEEEeEEEEEccCceEEEEecCCCCEeCeEEEeEEEeCC---CcceeeecCCc
Confidence 999999999997654 4455666788999999999999743 34678988864
|
| >d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]
Probab=100.00 E-value=3.3e-50 Score=393.29 Aligned_cols=298 Identities=17% Similarity=0.231 Sum_probs=234.5
Q ss_pred HHHHHHHHHhhccccCCCcEEEecCCceeeeeeEeccceEEEeccCcEEEecCCCCCCCcCCCCCCCCcccccCCCccee
Q 012788 58 LAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKS 137 (456)
Q Consensus 58 ~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~l~L~s~~tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 137 (456)
.+.++||++| ++.++++|+||+|+|+. |+|.++.+|.++ | .+.+.. ..|. .+
T Consensus 6 ~~~a~~i~~C---s~~~~~~v~VPaG~~l~--L~~~~g~~v~f~-G-~~~~~~--~~w~-------------------gp 57 (333)
T d1k5ca_ 6 VDDAKDIAGC---SAVTLNGFTVPAGNTLV--LNPDKGATVTMA-G-DITFAK--TTLD-------------------GP 57 (333)
T ss_dssp TTGGGGCTTC---SEEEECCEEECTTCCEE--ECCCTTCEEEEC-S-CEEECC--CCSC-------------------SC
T ss_pred hHhhhhHhhC---cCCCCCeEEECCCCEEE--EecccCCEEEEe-e-eEeccc--cccc-------------------CC
Confidence 4455666666 56788999999999862 445556666554 2 222221 1231 13
Q ss_pred eEEEeeeeeEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEEeCCcceEEeeccc-ceEEEEE
Q 012788 138 LINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCS-NVHIQNI 216 (456)
Q Consensus 138 ~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~-nv~i~n~ 216 (456)
++... .+||+|+|.+|+|||+|+.||+..... ....||+++.+..+++ .|++++++|+|.|++++..|+ +++++|+
T Consensus 58 l~~~~-g~~i~i~G~ggvIDG~G~~wW~~~~~~-~~~~rP~~~~~~~~~~-~i~~i~~~nsp~~~~~i~~~~~~v~i~nv 134 (333)
T d1k5ca_ 58 LFTID-GTGINFVGADHIFDGNGALYWDGKGTN-NGTHKPHPFLKIKGSG-TYKKFEVLNSPAQAISVGPTDAHLTLDGI 134 (333)
T ss_dssp SEEEE-EEEEEEECTTCEEECCGGGTCCSCTTT-SSSCCCCCSEEEEEEE-EEESCEEESCSSCCEEEEEEEEEEEEESC
T ss_pred EEEEE-eceEEEEcCCCeEeCCchHHhcccCCC-CCCCCCeEEEEEecCc-eEEEEEEEECCceEEEEecccCcEEEEeE
Confidence 55544 599999997458999999999865432 3567899888877765 599999999999999999886 8888888
Q ss_pred EEECC-----CCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecc
Q 012788 217 SVHAP-----PESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGS 291 (456)
Q Consensus 217 ~i~~~-----~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs 291 (456)
+|.+. ..++|+||||+ +|+||+|+||+|.++||||++|+ .+||+|+||+|.. +|||+|||
T Consensus 135 ~I~~~~i~~~~~~~NTDGidi-~s~nV~I~n~~i~~gDDcIaik~------------g~ni~i~n~~c~~--ghGisiGS 199 (333)
T d1k5ca_ 135 TVDDFAGDTKNLGHNTDGFDV-SANNVTIQNCIVKNQDDCIAIND------------GNNIRFENNQCSG--GHGISIGS 199 (333)
T ss_dssp EEECGGGGGGGCCCSCCSEEE-ECSSEEEESCEEESSSCSEEEEE------------EEEEEEESCEEES--SCCEEEEE
T ss_pred EEEeeecCCCccCCCcceEeE-ecceEEEEecEEecCCCEEEEcC------------ccEEEEEEEEECC--CCceeeec
Confidence 88873 35789999999 58999999999999999999998 5899999999985 79999999
Q ss_pred cccC-cEEeEEEEeEEEECCcceEEEEecC-CCCceEEeEEEEceEecCc-ceeEEEeccCCCCCCCCCCCCCCCeEEEE
Q 012788 292 EMSG-GISNVQVEKIHLYDSLNGIEFRTTK-GRGGYIRQIVISDAELYNI-NVAFGACGNCGSHPDDDFDPDALPAIDQI 368 (456)
Q Consensus 292 ~~~~-~v~nI~v~n~~~~~~~~gi~iks~~-g~~g~v~nI~~~ni~~~~~-~~~i~i~~~y~~~~~~~~~~~~~~~i~nI 368 (456)
++.+ .|+||+|+||+|.++.+|+|||+|+ +++|+|+||+||||+|+++ ++||.|+|+|++... .|...+.|+||
T Consensus 200 ~g~~~~V~nV~v~n~~~~~t~~G~rIKt~~~~~~G~v~nI~f~ni~m~~v~~~pI~I~q~Y~~~~~---~~~s~v~i~nI 276 (333)
T d1k5ca_ 200 IATGKHVSNVVIKGNTVTRSMYGVRIKAQRTATSASVSGVTYDANTISGIAKYGVLISQSYPDDVG---NPGTGAPFSDV 276 (333)
T ss_dssp ECTTCEEEEEEEESCEEEEEEEEEEEEEETTCCSCEEEEEEEESCEEEEEEEEEEEEEEEETSSSS---SCCSSSCEEEE
T ss_pred ccCCCcEEEEEEEEeEEeCCcEEEEEEEccCCCceEEEEEEEEEEEEECcccCCEEEEeeCCCCCC---CCCCCCEEEeE
Confidence 9754 4999999999999999999999997 4679999999999999998 689999999986322 23333579999
Q ss_pred EEEEEEeeccce----eEEEEeeCCCCe-eeEEEEeEEEEeCCC
Q 012788 369 TFKDIIGTNITI----AGNFTGIQEAPF-ANICLSNISLSINPG 407 (456)
Q Consensus 369 t~~nI~~~~~~~----~~~~~g~~~~~~-~~I~~~nv~i~~~~~ 407 (456)
+|+||+++.... .+.+.|. .| .|++|+||++++.+.
T Consensus 277 ~~~ni~gT~~~~~~~~~v~~~c~---~~s~n~~~~~V~itggk~ 317 (333)
T d1k5ca_ 277 NFTGGATTIKVNNAATRVTVECG---NCSGNWNWSQLTVTGGKA 317 (333)
T ss_dssp EECSSCEEEEECTTCEEEEEECS---SEESEEEEEEEEEESSBC
T ss_pred EEEeeEEEeccCcceeEEEEeCC---CcccCeEEECeEEECCcC
Confidence 999999986431 2344443 35 489999999986543
|
| >d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Dextranase, catalytic domain domain: Dextranase, catalytic domain species: Penicillium minioluteum [TaxId: 28574]
Probab=100.00 E-value=1.1e-46 Score=378.01 Aligned_cols=336 Identities=14% Similarity=0.078 Sum_probs=258.5
Q ss_pred eecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCCceeeeeeEeccceEEEeccCcEEEecCCCCCCCcCCCCCC
Q 012788 44 TEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPS 123 (456)
Q Consensus 44 ~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~l~L~s~~tL~l~~ga~i~~~~~~~~~~~~~~~~~ 123 (456)
+.|||+|++++|+|+|||+|+.+++ ...++++||||||+|+++++.+++++++.+. ++++.+.....|..
T Consensus 1 ~~~ga~p~~~~d~t~a~~~a~~~~~--~~~~~~vvy~PpG~y~~g~~~~~~~~~~~~~--g~~l~~~~~~~y~~------ 70 (373)
T d1ogmx2 1 LPSGMIPHMTPDNTQTMTPGPINNG--DWGAKSILYFPPGVYWMNQDQSGNSGKLGSN--HIRLNSNTYWVYLA------ 70 (373)
T ss_dssp CCGGGSCCCCTTTEEECCSEEECTT--TTCSSSEEEECSEEEEECBCTTCCBSCSSSC--CEECCTTCCEEEEC------
T ss_pred CCCCccCCCCCCchHHhhhhhhhhc--ccCCCCEEEECCceeEeCCeeecCceEEEcC--ceEeccCceEEecC------
Confidence 3699999999999999999955442 3467799999999999999999999988763 44444444333321
Q ss_pred CCcccccCCCcceeeEEEeeeeeEEEeccCceeeCCCccccccccc-------CCCCCCCCeeEEEEeeccEEEEeEEEE
Q 012788 124 YGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSS-------QSLNYSRPHLVEFISSENVVVSNLTFL 196 (456)
Q Consensus 124 ~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~-------~~~~~~rp~~i~~~~~~nv~I~~v~i~ 196 (456)
.+.....++.+.+.+|++|+|+ |+|||+|..||..... ......||+++.|..|+|++|+|++++
T Consensus 71 -------~G~~~~~~i~~~~~~nv~I~G~-G~idG~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~n~~i~giti~ 142 (373)
T d1ogmx2 71 -------PGAYVKGAIEYFTKQNFYATGH-GILSGENYVYQANAGDNYIAVKSDSTSLRMWWHNNLGGGQTWYCVGPTIN 142 (373)
T ss_dssp -------TTEEEESCEEECCSSCEEEESS-CEEECTTSCTTCBTTTTTBSCCCTTTBCCSEEESCCCSSEEEEEESCEEE
T ss_pred -------CCcEEEeEEEecCcceEEEEcc-eEEcCCcceecccccccccccccCCcccCCceEEEEEcceEEEEeCEEEE
Confidence 0112245788899999999997 9999999999976432 223456899999999999999999999
Q ss_pred eCCcceEEeecccceEEEEEEEEC-CCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEE
Q 012788 197 NAPAYNIHPVYCSNVHIQNISVHA-PPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIR 275 (456)
Q Consensus 197 ns~~~~i~~~~~~nv~i~n~~i~~-~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~ 275 (456)
|++.|++++..|++++++++++.. +.+.+|+|||++ |++|+|+||+++++||||++|+ +|++|+
T Consensus 143 ~s~~~~~~~~~~~~v~i~~~~i~~~~~~~~n~dgi~~--~~~~~i~~~~~~~gDD~i~~~s-------------~~i~v~ 207 (373)
T d1ogmx2 143 APPFNTMDFNGNSGISSQISDYKQVGAFFFQTDGPEI--YPNSVVHDVFWHVNDDAIKIYY-------------SGASVS 207 (373)
T ss_dssp CCSSCCEEECSSSCEEEEEEEEEEECCCSTTCCCCBC--CTTCEEEEEEEEESSCSEECCS-------------TTCEEE
T ss_pred CCCeeEEEEccCCeEEEEEEEEEecCCCCCCCeeeec--cCCEEEEeeEEecCCCEEEecC-------------CCEEEE
Confidence 999999999999999999999975 456889999998 6899999999999999999985 699999
Q ss_pred EEEEecC-CCCeeEecccccCcEEeEEEEeEEEECCcc---------------eEEEEecCCCCceEEeEEEEceEecCc
Q 012788 276 RVLLQSS-SGSSVAFGSEMSGGISNVQVEKIHLYDSLN---------------GIEFRTTKGRGGYIRQIVISDAELYNI 339 (456)
Q Consensus 276 n~~~~~~-~~~gi~igs~~~~~v~nI~v~n~~~~~~~~---------------gi~iks~~g~~g~v~nI~~~ni~~~~~ 339 (456)
||+++.. .++++++|+.. +.++|++|+||++.++.. ..+++++.+++|.++||+|+||+|+++
T Consensus 208 n~~~~~~~~~~~~~~g~~g-~~i~nv~v~ni~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ni~f~nI~~~~~ 286 (373)
T d1ogmx2 208 RATIWKCHNDPIIQMGWTS-RDISGVTIDTLNVIHTRYIKSETVVPSAIIGASPFYASGMSPDSRKSISMTVSNVVCEGL 286 (373)
T ss_dssp EEEEEECSSSCSEECCSSC-CCEEEEEEEEEEEEECCCSSCCTTTTCEEEEECCCSSSSCCCEEEEEEEEEEEEEEECSS
T ss_pred EEEEECCCceeEEEeccCC-CCcceeEEEeeEEECceeccccccccccccccccceeeeccCCCeEEEeEEEEeEEEECc
Confidence 9999864 24567776653 469999999999987542 123344445678999999999999999
Q ss_pred ceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccc-eeEEEEeeCCCCeeeEEEEeEEE-----EeCCCCCCcce
Q 012788 340 NVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT-IAGNFTGIQEAPFANICLSNISL-----SINPGSYNSWE 413 (456)
Q Consensus 340 ~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~-~~~~~~g~~~~~~~~I~~~nv~i-----~~~~~~~~~~~ 413 (456)
+.++...+.+.. +.. +.++||+|+||+.+... .+..+.+.+..+++++.|+||++ +....+.....
T Consensus 287 ~~~~i~~~~~~~-------~~~-~~i~nV~i~nI~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~i~~~~i~~~n~~~~~~~ 358 (373)
T d1ogmx2 287 CPSLFRITPLQN-------YKN-FVVKNVAFPDGLQTNSIGTGESIIPAASGLTMGLAISAWTIGGQKVTMENFQANSLG 358 (373)
T ss_dssp BCEEEEECCSEE-------EEE-EEEEEEEETTCBCCSTTCTTCEEECCCTTCCEEEEEEEEEETTEECCTTTCSTTSSS
T ss_pred ccCeEEEEEcCC-------CCC-CccceEEEEeeEEEeccCceeEEeecccCCcCCeEEeCeEEeCeEEecCCCCCCccc
Confidence 998876554432 112 47999999999988764 45566666666655666665555 44433334555
Q ss_pred eeeeeecc
Q 012788 414 CSNIHGSS 421 (456)
Q Consensus 414 c~~v~g~~ 421 (456)
|.++.++.
T Consensus 359 ~~~~~g~~ 366 (373)
T d1ogmx2 359 QFNIDGSY 366 (373)
T ss_dssp CEEECGGG
T ss_pred eEEECCcc
Confidence 66665554
|
| >d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Fungus (Aspergillus aculeatus) [TaxId: 5053]
Probab=99.83 E-value=4.8e-19 Score=172.85 Aligned_cols=199 Identities=18% Similarity=0.233 Sum_probs=154.1
Q ss_pred eEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEec---------CCceEecCCCCCccccccCCCcccE
Q 012788 202 NIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAM---------GHDAISLKSGWDEYGIAYGRPTTDV 272 (456)
Q Consensus 202 ~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~---------gDD~iai~sg~~~~g~~~~~~s~ni 272 (456)
.+.+.+|+|++|+++++.+++. -.+++..|+||+|+|.+|.+ .-|||.+.+ ++||
T Consensus 106 ~l~~~~~~nv~i~gitl~nsp~----w~~~~~~s~nv~i~~v~I~~~~~~~~~~~NtDGidi~~------------s~nV 169 (339)
T d1ia5a_ 106 FFAAHSLTNSVISGLKIVNSPV----QVFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGT------------STYV 169 (339)
T ss_dssp CEEEEEEEEEEEESCEEECCSS----CCEEEESCEEEEEESCEEECGGGTTTTCCSCCSEEEES------------CEEE
T ss_pred EEEEEecCCCEEeceEEEcCCc----eEEEEecccEEEEEEEEEecccCCccCCCCCCccccCC------------CCeE
Confidence 4888999999999999999763 45899999999999999976 237777765 8999
Q ss_pred EEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcceEEEEecCC-CCceEEeEEEEceEecCcceeEEEeccCCC
Q 012788 273 HIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKG-RGGYIRQIVISDAELYNINVAFGACGNCGS 351 (456)
Q Consensus 273 ~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~iks~~g-~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~ 351 (456)
+|+||++... +++|++++. +||+|+||++... +|+.|.+... ..+.|+||+|+|+++.+..++++|+...+
T Consensus 170 ~I~n~~i~~g-DDcIaiks~-----~ni~i~n~~c~~g-hG~sigslG~~~~~~v~nV~v~n~~~~~t~~GirIKt~~g- 241 (339)
T d1ia5a_ 170 TISGATVYNQ-DDCVAVNSG-----ENIYFSGGYCSGG-HGLSIGSVGGRSDNTVKNVTFVDSTIINSDNGVRIKTNID- 241 (339)
T ss_dssp EEESCEEECS-SCSEEESSE-----EEEEEESCEEESS-SCEEEEEECSSSCCEEEEEEEEEEEEESCSEEEEEEEETT-
T ss_pred EEeeeEEEcC-CCeEEecCc-----cEEEEEEeEEecc-ccceecccccCccccEEEEEEECCcccCCcceeEEeeeCC-
Confidence 9999999987 999999963 7999999999864 6888876532 24789999999999999999999987533
Q ss_pred CCCCCCCCCCCCeEEEEEEEEEEeeccc-eeEEEE---eeC------CCCeeeEEEEeEEEEeCCCCC------Ccceee
Q 012788 352 HPDDDFDPDALPAIDQITFKDIIGTNIT-IAGNFT---GIQ------EAPFANICLSNISLSINPGSY------NSWECS 415 (456)
Q Consensus 352 ~~~~~~~~~~~~~i~nIt~~nI~~~~~~-~~~~~~---g~~------~~~~~~I~~~nv~i~~~~~~~------~~~~c~ 415 (456)
+.+.++||+|+||++.+.. .|+.+. +.. ..+++||+|+||+.+.+.... ...-|+
T Consensus 242 ---------~~G~v~nV~f~ni~~~~v~~~pI~I~~~Y~~~~~~~~~~v~i~nI~~~Ni~gt~~~~~~~~~~~~~~~p~~ 312 (339)
T d1ia5a_ 242 ---------TTGSVSDVTYKDITLTSIAKYGIVVQQNYGDTSSTPTTGVPITDFVLDNVHGSVVSSGTNILISCGSGSCS 312 (339)
T ss_dssp ---------CCCEEEEEEEEEEEEEEESSEEEEEEEEETCTTSCCCSSSCEEEEEEEEEEEEECTTSEEEEEECCTTCEE
T ss_pred ---------CCEEEEEEEEEEEEEeccccccEEEEeecCCCCCCCCCCcEEEeEEEEeEEEEecccCceEEEeCCCCCEe
Confidence 2368999999999999974 577663 211 136999999999987665421 223355
Q ss_pred eeeeccc----cccCCCCCCcc
Q 012788 416 NIHGSSE----SVFPEPCPELE 433 (456)
Q Consensus 416 ~v~g~~~----~~~p~~c~~~~ 433 (456)
|+.-... ...+..|..++
T Consensus 313 ni~~~nV~itg~~~~~~C~nv~ 334 (339)
T d1ia5a_ 313 DWTWTDVSVSGGKTSSKCTNVP 334 (339)
T ss_dssp EEEEEEEEEESSBCCSCCBSCC
T ss_pred ceEEEeEEEcCCCcceEeECCC
Confidence 5553322 23344687765
|
| >d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Erwinia carotovora, subsp. carotovora [TaxId: 554]
Probab=99.81 E-value=1.7e-18 Score=172.12 Aligned_cols=198 Identities=11% Similarity=0.165 Sum_probs=159.8
Q ss_pred CeeEEEEeeccEEEEeEEEEeCCc----------------------------ceEEeecccceEEEEEEEECCCCCCCCc
Q 012788 177 PHLVEFISSENVVVSNLTFLNAPA----------------------------YNIHPVYCSNVHIQNISVHAPPESPYTV 228 (456)
Q Consensus 177 p~~i~~~~~~nv~I~~v~i~ns~~----------------------------~~i~~~~~~nv~i~n~~i~~~~~~~n~D 228 (456)
..+|...+++|++|.|--..+... ..+.+.+|+|++|+|+++.+++ ..
T Consensus 100 ~~~i~~~~~~Ni~ItG~G~IDG~G~~~~~~~~~~~~~~~~~~~~~~~~~~rP~~i~~~~~~nv~i~~iti~ns~----~~ 175 (376)
T d1bhea_ 100 DAFITAVSTTNSGIYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSP----NF 175 (376)
T ss_dssp CCSEEEESCBSCEEECSSEEECCTTSCCSSSSSCTTHHHHHHHHHTCEECCCCSEEEESCEEEEEEEEEEECCS----SC
T ss_pred ceeEEecCcceEEEEeCcEEecccceeecCCccchhccccccccccCCCCCCeEEEEEecccEEEEeeEEecCC----ce
Confidence 457888999999998753333211 1488999999999999999865 35
Q ss_pred eeeecCccCEEEEecEEec-----CCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccc-cCcEEeEEE
Q 012788 229 GIVPDSSDNVCIEDCIIAM-----GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEM-SGGISNVQV 302 (456)
Q Consensus 229 Gi~~~~s~nV~I~n~~i~~-----gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~-~~~v~nI~v 302 (456)
++++..|++++|+|+.|.+ ..|||.+.+ ++||+|+||++... +++|++++.. ....+||+|
T Consensus 176 ~~~~~~~~~v~i~n~~I~~~~~~~NtDGidi~~------------s~nv~I~n~~i~~g-DD~i~~ks~~~~~~~~ni~i 242 (376)
T d1bhea_ 176 HVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMS------------SKNITIAYSNIATG-DDNVAIKAYKGRAETRNISI 242 (376)
T ss_dssp SEEEESCEEEEEEEEEEECCTTCSSCCSEEEES------------CEEEEEESCEEECS-SCSEEEEECTTSCCEEEEEE
T ss_pred EEEEeCCceEEEEeEeccCCccCCCcceeeccc------------cceEEEEeceeecC-CCceeeecccCCCCcceEEE
Confidence 7999999999999999986 247887765 89999999999986 9999999864 346899999
Q ss_pred EeEEEECCcceEEEEecCCCCceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccceeE
Q 012788 303 EKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAG 382 (456)
Q Consensus 303 ~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~ 382 (456)
+||++.. .+|+.|.+.. ..++||+|+|+++.+...+++|+... .+.+.|+||+|+||++.+...|+
T Consensus 243 ~n~~~~~-~~g~~iGs~~---~~v~nv~i~n~~~~~~~~g~~Iks~~----------~~gG~v~nI~f~ni~~~~v~~pi 308 (376)
T d1bhea_ 243 LHNDFGT-GHGMSIGSET---MGVYNVTVDDLKMNGTTNGLRIKSDK----------SAAGVVNGVRYSNVVMKNVAKPI 308 (376)
T ss_dssp EEEEECS-SSCEEEEEEE---SSEEEEEEEEEEEESCSEEEEEECCT----------TTCCEEEEEEEEEEEEESCSEEE
T ss_pred EeeEEec-CCCceecccc---CCEEEEEEEeeeEcCCCceEEEEecC----------CCccEEEEEEEEeEEEeccCccE
Confidence 9999976 5799998862 33899999999999999999998642 22358999999999999998888
Q ss_pred EEEeeC-------CCCeeeEEEEeEEEEeC
Q 012788 383 NFTGIQ-------EAPFANICLSNISLSIN 405 (456)
Q Consensus 383 ~~~g~~-------~~~~~~I~~~nv~i~~~ 405 (456)
.+.... ...++||+|+||+.+.+
T Consensus 309 ~i~~~y~~~~~~~~~~i~nIt~~Ni~~~~~ 338 (376)
T d1bhea_ 309 VIDTVYEKKEGSNVPDWSDITFKDVTSETK 338 (376)
T ss_dssp EEETTSSCCCCCCCCEEEEEEEEEEEECSC
T ss_pred EEEeecCCCCCCCCCEEeeEEEEeEEEecc
Confidence 874321 12379999999987653
|
| >d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Fusarium moniliforme [TaxId: 117187]
Probab=99.81 E-value=1.3e-17 Score=163.89 Aligned_cols=191 Identities=16% Similarity=0.217 Sum_probs=149.1
Q ss_pred eEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEec-----------------CCceEecCCCCCccccc
Q 012788 202 NIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAM-----------------GHDAISLKSGWDEYGIA 264 (456)
Q Consensus 202 ~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-----------------gDD~iai~sg~~~~g~~ 264 (456)
.+.+..|+|++|+++++.+++ ...+++..|+||+|+|.+|.+ ..|||.+.+
T Consensus 106 ~i~~~~~~nv~i~~i~l~nsp----~w~~~~~~~~nv~i~~i~I~~~~~~~~~~~~~~~~~~~NtDGiDi~~-------- 173 (349)
T d1hg8a_ 106 IVVQKTTGNSKITNLNIQNWP----VHCFDITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDISS-------- 173 (349)
T ss_dssp EEEEEEESSEEEESCEEECCS----SEEEEEESCEEEEEEEEEEECGGGSSCCTTTTTSCSCCSCCSEEEES--------
T ss_pred EEEEeccCCeEEEeeEEeCCC----ceEEEEeccceEEEEEEEEECCCcccccccccCccccCCCCeEeeCC--------
Confidence 466789999999999999975 356889999999999999976 247777655
Q ss_pred cCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcceEEEEecC-CCCceEEeEEEEceEecCcceeE
Q 012788 265 YGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTK-GRGGYIRQIVISDAELYNINVAF 343 (456)
Q Consensus 265 ~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~iks~~-g~~g~v~nI~~~ni~~~~~~~~i 343 (456)
++||+|+||++... +++|++++ -+||+|+||++.+. +|+.+.+.. ...+.|+||+|+|+++.+..+++
T Consensus 174 ----s~nv~I~n~~i~~g-DD~iaik~-----~~ni~i~n~~~~~g-hg~sigs~G~~~~~~v~nV~v~n~~~~~~~~g~ 242 (349)
T d1hg8a_ 174 ----SDHVTLDNNHVYNQ-DDCVAVTS-----GTNIVVSNMYCSGG-HGLSIGSVGGKSDNVVDGVQFLSSQVVNSQNGC 242 (349)
T ss_dssp ----CEEEEEEEEEEECS-SCSEEESS-----EEEEEEEEEEEESS-CCEEEEEESSSSCCEEEEEEEEEEEEEEEEEEE
T ss_pred ----CCeEEEEeeeecCC-CCceEecc-----ccceEEEEEEEeCC-cccccccCCCcccccEEEEEEEcceecCCcceE
Confidence 89999999999987 99999995 37999999999875 566665432 23578999999999999999999
Q ss_pred EEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccce-eEEEEe-e--------CCC--CeeeEEEEeEEEEeCCCCC--
Q 012788 344 GACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITI-AGNFTG-I--------QEA--PFANICLSNISLSINPGSY-- 409 (456)
Q Consensus 344 ~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~-~~~~~g-~--------~~~--~~~~I~~~nv~i~~~~~~~-- 409 (456)
+|+...+ +.+.++||+|+||++..... |+.+.. + +.. .++||+|+||+.+.+.+..
T Consensus 243 rIKs~~g----------~gG~v~nI~~~ni~~~~v~~~pI~i~~~y~~~~~~~~~~~~v~i~nIt~~nItgt~~~~~~~~ 312 (349)
T d1hg8a_ 243 RIKSNSG----------ATGTINNVTYQNIALTNISTYGVDVQQDYLNGGPTGKPTNGVKISNIKFIKVTGTVASSAQDW 312 (349)
T ss_dssp EEEEETT----------CCEEEEEEEEEEEEEEEEEEEEEEEEEEECSSSBCSCCCSSEEEEEEEEEEEEEEECTTSEEE
T ss_pred EEEEEcC----------CCccEEEeEEEEEEEcCcccccEEEEeeccCCCCCCCCCCCcEEEEEEEEEEEEEecCCCcEE
Confidence 9987643 23589999999999999864 666532 1 111 4899999999988765422
Q ss_pred ----Ccceeeeeeecccccc
Q 012788 410 ----NSWECSNIHGSSESVF 425 (456)
Q Consensus 410 ----~~~~c~~v~g~~~~~~ 425 (456)
...-|+|+.-....++
T Consensus 313 ~~~~~~~p~~ni~~~nV~i~ 332 (349)
T d1hg8a_ 313 FILCGDGSCSGFTFSGNAIT 332 (349)
T ss_dssp EEECCSSCEEEEEEESCEEE
T ss_pred EEeCCCCcEeCeEEEeEEEE
Confidence 2345677766555443
|
| >d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]
Probab=99.80 E-value=4.7e-18 Score=165.89 Aligned_cols=220 Identities=15% Similarity=0.241 Sum_probs=163.0
Q ss_pred EEEEeeccEEEEeEE--EEeCCc---------------ceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEe
Q 012788 180 VEFISSENVVVSNLT--FLNAPA---------------YNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIED 242 (456)
Q Consensus 180 i~~~~~~nv~I~~v~--i~ns~~---------------~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n 242 (456)
+.+...+|++|.+-- ..|... ..+.+.+|+|++|+++++.+++. ..+++ .|+||+|+|
T Consensus 62 ~~~~~~~ni~i~G~g~g~IDG~G~~ww~~~~~~~~~rP~~~~~~~~~nv~i~gi~~~nsp~----w~~~i-~~~nv~i~~ 136 (335)
T d1czfa_ 62 LISMSGEHITVTGASGHLINCDGARWWDGKGTSGKKKPKFFYAHGLDSSSITGLNIKNTPL----MAFSV-QANDITFTD 136 (335)
T ss_dssp SEEEEEESCEEEECTTCEEECCGGGTCCSCTTSSSCCCCCEEEEEEETEEEESCEEECCSS----CCEEE-ECSSEEEES
T ss_pred EEEEecceEEEEeCCCCEEcCCCHHHhccCCCCCCCCceEEEEecceEEEEEeeEEEcCCc----eEEEE-eeeeEEEEe
Confidence 344567899888743 334211 14788999999999999999763 24787 489999999
Q ss_pred cEEec---------CCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcce
Q 012788 243 CIIAM---------GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNG 313 (456)
Q Consensus 243 ~~i~~---------gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~g 313 (456)
.+|.+ ..|||.+.+ ++||+|+||++... +++|++++. +||+|+|+++... +|
T Consensus 137 i~I~~~~~~~~~~~NtDGidi~~------------s~nV~I~n~~i~tg-DDcIaiks~-----~ni~i~n~~c~~~-hG 197 (335)
T d1czfa_ 137 VTINNADGDTQGGHNTDAFDVGN------------SVGVNIIKPWVHNQ-DDCLAVNSG-----ENIWFTGGTCIGG-HG 197 (335)
T ss_dssp CEEECGGGGTTTCCSCCSEEECS------------CEEEEEESCEEECS-SCSEEESSE-----EEEEEESCEEESS-CC
T ss_pred EEEECcCCCcCccCCCCceEecC------------CCeEEEEeeEEecC-CceEEecCc-----eEEEEEEEEEECC-CC
Confidence 99976 358888866 89999999999987 999999963 7999999999864 67
Q ss_pred EEEEecC-CCCceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccce-eEEEE---ee-
Q 012788 314 IEFRTTK-GRGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITI-AGNFT---GI- 387 (456)
Q Consensus 314 i~iks~~-g~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~-~~~~~---g~- 387 (456)
+.+.+.. ...+.|+||+|+|+++.+..++++|+.+.+ +.+.++||+|+||++.+... |+.+. +.
T Consensus 198 ~sigslG~~~~~~v~nV~v~n~~i~~t~~g~rIKt~~g----------~~G~v~nI~~~ni~m~~v~~~pi~i~~~y~~~ 267 (335)
T d1czfa_ 198 LSIGSVGDRSNNVVKNVTIEHSTVSNSENAVRIKTISG----------ATGSVSEITYSNIVMSGISDYGVVIQQDYEDG 267 (335)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEEEEEEEEEEEEEETT----------CCEEEEEEEEEEEEEEEEEEEEEEEEEEEETT
T ss_pred ccccccCCCCcCCEeEEEEEeeEEECCCccceEeccCC----------CCccEeEEEEEeEEEcCccccCEEEEeeccCC
Confidence 7776542 234779999999999999999999997633 22589999999999999865 66552 21
Q ss_pred -----CC--CCeeeEEEEeEEEEeCCCCC------Ccceeeeeeecccccc----CCCCCCcc
Q 012788 388 -----QE--APFANICLSNISLSINPGSY------NSWECSNIHGSSESVF----PEPCPELE 433 (456)
Q Consensus 388 -----~~--~~~~~I~~~nv~i~~~~~~~------~~~~c~~v~g~~~~~~----p~~c~~~~ 433 (456)
+. .+++||+|+||+.+...... ...-|+|+.-....++ ...|..++
T Consensus 268 ~~~~~~~s~~~i~nI~~~Ni~gt~~~~~~~~~~~~~~~p~~ni~~~nV~i~g~~~~~~C~nv~ 330 (335)
T d1czfa_ 268 KPTGKPTNGVTIQDVKLESVTGSVDSGATEIYLLCGSGSCSDWTWDDVKVTGGKKSTACKNFP 330 (335)
T ss_dssp EECSCCCSSEEEEEEEEEEEEEEECTTSEEEEEECCTTTEEEEEEEEEEEESSBCCSCCBSCC
T ss_pred CCCCCCCCCcEEeeEEEEeEEEEeccCceeEEEeCCCCCeeeeEEEeEEEeCCCcceEeECCC
Confidence 11 24899999999988765421 1234777765443332 22476654
|
| >d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]
Probab=99.77 E-value=5.2e-17 Score=158.20 Aligned_cols=232 Identities=19% Similarity=0.196 Sum_probs=163.0
Q ss_pred ceEEEeccCcEEEecCCCCCCCcCCCCCCCCcccccCCCcceeeEEEeeeeeEEEeccCceeeCCCcccccccccCCCCC
Q 012788 95 HLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNY 174 (456)
Q Consensus 95 ~~tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~GtidG~g~~ww~~~~~~~~~~ 174 (456)
++++.+..+++|.+... .-|....... ......++.+.+++|++|.|- +|.- .++|
T Consensus 69 ~~~i~~~G~G~IDG~G~-~ww~~~~~~~---------~~~rP~~i~~~~~~nv~i~gi--ti~n--sp~~---------- 124 (336)
T d1nhca_ 69 DLTVTMADGAVIDGDGS-RWWDSKGTNG---------GKTKPKFMYIHDVEDSTFKGI--NIKN--TPVQ---------- 124 (336)
T ss_dssp SCEEEECTTCEEECCGG-GTCCSCTTTS---------SSCCCCCEEEEEEEEEEEESC--EEEC--CSSC----------
T ss_pred EEEEEEeCCeEEeCCcH-HHhcccccCC---------CCCCCeEEEEeccCCcEEEeE--EEEc--CCce----------
Confidence 55677777889876542 2332211100 011234688899999999994 4431 2233
Q ss_pred CCCeeEEEEeeccEEEEeEEEEeCC--------cceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEe
Q 012788 175 SRPHLVEFISSENVVVSNLTFLNAP--------AYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIA 246 (456)
Q Consensus 175 ~rp~~i~~~~~~nv~I~~v~i~ns~--------~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~ 246 (456)
.+.+ +|+|++|++++|.++. ..+|++..|++|+|+|++|... .|.|.+.++++++|+|++..
T Consensus 125 ----~i~i-~~~nv~i~nv~I~~~~~~~~~~~NtDGidi~~s~nv~I~n~~i~~g-----DDcIaik~g~ni~i~n~~c~ 194 (336)
T d1nhca_ 125 ----AISV-QATNVHLNDFTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKNQ-----DDCIAINSGESISFTGGTCS 194 (336)
T ss_dssp ----CEEE-EEEEEEEESCEEECTTHHHHTCCSCCSEEECSCEEEEEESCEEESS-----SEEEEESSEEEEEEESCEEE
T ss_pred ----EEEE-eeeEEEEEEEEEECcCCCccccCCCceEEcCCccCEeEecceEeec-----CCcEEeeccceEEEEEeeec
Confidence 2565 6999999999999864 2689999999999999999984 58999999999999999988
Q ss_pred cCCceEecCC-CCCccccccCCCcccEEEEEEEEecCCCCeeEeccc--ccCcEEeEEEEeEEEECCc-ceEEEEecC--
Q 012788 247 MGHDAISLKS-GWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSE--MSGGISNVQVEKIHLYDSL-NGIEFRTTK-- 320 (456)
Q Consensus 247 ~gDD~iai~s-g~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~--~~~~v~nI~v~n~~~~~~~-~gi~iks~~-- 320 (456)
.+. ++++.+ |.. .....+||+|+||++.+. ..|++|++. ..+.++||+|+|++|.+.. .+|.|....
T Consensus 195 ~~~-g~sigslG~~-----~~~~v~nV~v~n~~~~~t-~~G~rIKt~~~~~G~v~nV~f~ni~~~~V~~~pi~I~~~Y~~ 267 (336)
T d1nhca_ 195 GGH-GLSIGSVGGR-----DDNTVKNVTISDSTVSNS-ANGVRIKTIYKETGDVSEITYSNIQLSGITDYGIVIEQDYEN 267 (336)
T ss_dssp SSS-EEEEEEESSS-----SCCEEEEEEEEEEEEESC-SEEEEEEEETTCCCEEEEEEEEEEEEEEESSEEEEEEEEEET
T ss_pred ccc-cceeeecccc-----ccccEEEEEEEeceeeCC-CceeEEEEecCCCceEeeEEEEeEEEeccccccEEEEeeccC
Confidence 654 444322 211 123489999999999987 889999875 3467999999999999974 588886421
Q ss_pred C-------CCceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeecc
Q 012788 321 G-------RGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNI 378 (456)
Q Consensus 321 g-------~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~ 378 (456)
+ ....|+||+|+||+......+..+... + ++. .++||+|+||+++..
T Consensus 268 ~~~~~~~~~~v~I~nIt~~ni~gt~~~~~~~~~~~-~--------~~~--~~~ni~l~nV~itgg 321 (336)
T d1nhca_ 268 GSPTGTPSTGIPITDVTVDGVTGTLEDDATQVYIL-C--------GDG--SCSDWTWSGVDLSGG 321 (336)
T ss_dssp TEECSCCCSSSCEEEEEEEEEEEEECTTCEEEEEE-C--------CTT--CEEEEEEEEEEEESS
T ss_pred CCCcCCCCCCeeEEeEEEEeEEEEEccCceEEEEe-c--------CCC--CEeCeEEEeEEEeCC
Confidence 1 122499999999987643322222111 1 122 599999999999864
|
| >d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Rhamnogalacturonase A species: Aspergillus aculeatus [TaxId: 5053]
Probab=99.75 E-value=4e-16 Score=156.70 Aligned_cols=188 Identities=15% Similarity=0.225 Sum_probs=148.6
Q ss_pred eEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCC----ceEecCCCCCccccccCCCcccEEEEEE
Q 012788 202 NIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGH----DAISLKSGWDEYGIAYGRPTTDVHIRRV 277 (456)
Q Consensus 202 ~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gD----D~iai~sg~~~~g~~~~~~s~ni~I~n~ 277 (456)
.+.+.+|+|++|+++++.+++ .-.+.+..|++++|+|+.|...+ |||.+. ++||+|+||
T Consensus 129 ~l~~~~~~n~~i~git~~nsp----~~~i~i~~c~~v~i~nv~I~~~~~~NtDGIdi~-------------~snv~I~n~ 191 (422)
T d1rmga_ 129 ILRLTDVTHFSVHDIILVDAP----AFHFTMDTCSDGEVYNMAIRGGNEGGLDGIDVW-------------GSNIWVHDV 191 (422)
T ss_dssp EEEEEEEEEEEEEEEEEECCS----SCSEEEEEEEEEEEEEEEEECCSSTTCCSEEEE-------------EEEEEEEEE
T ss_pred EEEEEeeeeeEEECcEecCCC----ceEEEEeccccEEEEeeEEcCCCCCccceEeec-------------ccEEEEEee
Confidence 478899999999999999975 34588889999999999998743 677663 469999999
Q ss_pred EEecCCCCeeEecccccCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCcceeEEEeccCCCCCCCCC
Q 012788 278 LLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDF 357 (456)
Q Consensus 278 ~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~ 357 (456)
++... +++|+|++ +.+||+|+|+++.. .+|+.|.+.. ..+.|+||+|+|+.+.+...+++++...+
T Consensus 192 ~i~~g-DDcIaiks----~s~nI~i~n~~c~~-g~GisiGs~g-~~~~V~nV~v~n~~~~~s~~g~~ik~~~g------- 257 (422)
T d1rmga_ 192 EVTNK-DECVTVKS----PANNILVESIYCNW-SGGCAMGSLG-ADTDVTDIVYRNVYTWSSNQMYMIKSNGG------- 257 (422)
T ss_dssp EEESS-SEEEEEEE----EEEEEEEEEEEEES-SSEEEEEEEC-TTEEEEEEEEEEEEEESSSCSEEEEEBBC-------
T ss_pred EEEcC-CCccccCC----CCccEEEEeeEEcc-ccceeEeecc-CCCCEEEEEEEeEEEeCCCceEEEEEcCC-------
Confidence 99986 99999996 57899999999875 4799999863 35679999999999999999999986421
Q ss_pred CCCCCCeEEEEEEEEEEeeccceeEEEEee---------CCCCeeeEEEEeEEEEeCCCCC---------Ccceeeeeee
Q 012788 358 DPDALPAIDQITFKDIIGTNITIAGNFTGI---------QEAPFANICLSNISLSINPGSY---------NSWECSNIHG 419 (456)
Q Consensus 358 ~~~~~~~i~nIt~~nI~~~~~~~~~~~~g~---------~~~~~~~I~~~nv~i~~~~~~~---------~~~~c~~v~g 419 (456)
. +.++||+|+||++.+...++.+... ...+++||+|+||+-+...+.. ...-|+|+.-
T Consensus 258 ---~-G~V~nI~f~Ni~~~nv~~pI~Id~~y~~~~~~~~~~v~isnIt~~Ni~GT~~~~~~~~~i~l~Cs~~~pc~ni~l 333 (422)
T d1rmga_ 258 ---S-GTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVAGDGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTL 333 (422)
T ss_dssp ---C-EEEEEEEEEEEEEEEESCSEEEETBCTTSCCBSSSCCEEEEEEEEEEEEEESCTTTSCSEEEECBTTBCEEEEEE
T ss_pred ---C-ceecceEEEEEEEecccccEEEecccCCCCCCCCCCeEEEEEEEEeEEEEecCCcccccEEEEcCCCCCCcceEE
Confidence 2 5899999999999998888877421 1235889999999987754321 2334777765
Q ss_pred ccccc
Q 012788 420 SSESV 424 (456)
Q Consensus 420 ~~~~~ 424 (456)
...++
T Consensus 334 ~ni~l 338 (422)
T d1rmga_ 334 EDIAI 338 (422)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 54433
|
| >d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]
Probab=99.68 E-value=4.3e-16 Score=150.73 Aligned_cols=173 Identities=13% Similarity=0.216 Sum_probs=128.6
Q ss_pred cceEEEEEEEECCCCCCCCceeeecCcc-CEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCee
Q 012788 209 SNVHIQNISVHAPPESPYTVGIVPDSSD-NVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSV 287 (456)
Q Consensus 209 ~nv~i~n~~i~~~~~~~n~DGi~~~~s~-nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi 287 (456)
.+..++++++.+++. -.+++..|+ +|+|+|.++.+-. .-+.....+.+|+.+ . ++||+|+||++... +++|
T Consensus 103 ~~~~i~~i~~~nsp~----~~~~i~~~~~~v~i~nv~I~~~~-i~~~~~~~NTDGidi-~-s~nV~I~n~~i~~g-DDcI 174 (333)
T d1k5ca_ 103 GSGTYKKFEVLNSPA----QAISVGPTDAHLTLDGITVDDFA-GDTKNLGHNTDGFDV-S-ANNVTIQNCIVKNQ-DDCI 174 (333)
T ss_dssp EEEEEESCEEESCSS----CCEEEEEEEEEEEEESCEEECGG-GGGGGCCCSCCSEEE-E-CSSEEEESCEEESS-SCSE
T ss_pred cCceEEEEEEEECCc----eEEEEecccCcEEEEeEEEEeee-cCCCccCCCcceEeE-e-cceEEEEecEEecC-CCEE
Confidence 345699999998753 457777775 8899998887510 000001112233332 1 78999999999987 9999
Q ss_pred EecccccCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEceEecCcceeEEEeccCCCCCCCCCCCCCCCeEEE
Q 012788 288 AFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQ 367 (456)
Q Consensus 288 ~igs~~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~n 367 (456)
+|++. +||+|+||++.+. +|+.|.+.. .++.|+||+|+|++|.+..++++|+.+... +.+.++|
T Consensus 175 aik~g-----~ni~i~n~~c~~g-hGisiGS~g-~~~~V~nV~v~n~~~~~t~~G~rIKt~~~~---------~~G~v~n 238 (333)
T d1k5ca_ 175 AINDG-----NNIRFENNQCSGG-HGISIGSIA-TGKHVSNVVIKGNTVTRSMYGVRIKAQRTA---------TSASVSG 238 (333)
T ss_dssp EEEEE-----EEEEEESCEEESS-CCEEEEEEC-TTCEEEEEEEESCEEEEEEEEEEEEEETTC---------CSCEEEE
T ss_pred EEcCc-----cEEEEEEEEECCC-Cceeeeccc-CCCcEEEEEEEEeEEeCCcEEEEEEEccCC---------CceEEEE
Confidence 99863 7999999999876 699999973 356799999999999999999999875321 2358999
Q ss_pred EEEEEEEeeccc-eeEEEEe-e--------CCCCeeeEEEEeEEEEeC
Q 012788 368 ITFKDIIGTNIT-IAGNFTG-I--------QEAPFANICLSNISLSIN 405 (456)
Q Consensus 368 It~~nI~~~~~~-~~~~~~g-~--------~~~~~~~I~~~nv~i~~~ 405 (456)
|+|+||++.+.. .|+.+.. + ...+++||+|+||+.+..
T Consensus 239 I~f~ni~m~~v~~~pI~I~q~Y~~~~~~~~s~v~i~nI~~~ni~gT~~ 286 (333)
T d1k5ca_ 239 VTYDANTISGIAKYGVLISQSYPDDVGNPGTGAPFSDVNFTGGATTIK 286 (333)
T ss_dssp EEEESCEEEEEEEEEEEEEEEETSSSSSCCSSSCEEEEEECSSCEEEE
T ss_pred EEEEEEEEECcccCCEEEEeeCCCCCCCCCCCCEEEeEEEEeeEEEec
Confidence 999999999974 5776632 1 123699999999988754
|
| >d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: iota-carrageenase domain: iota-carrageenase species: Alteromonas sp., atcc 43554 [TaxId: 232]
Probab=99.64 E-value=4.4e-14 Score=129.99 Aligned_cols=254 Identities=17% Similarity=0.202 Sum_probs=174.0
Q ss_pred CCCCCCCCCceEEE-eecCccCCCCCchHHHHHHHHHHhhccccCCCcEEEecCCceeeeeeEeccceEEEeccCcEEEe
Q 012788 30 DQPTLDPRPHSVSI-TEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILG 108 (456)
Q Consensus 30 ~~~~~~~~~~~~~v-~dfGA~gDG~tddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~l~L~s~~tL~l~~ga~i~~ 108 (456)
+|.|+.++....|+ .||||.+....||++++|.||+++++ +.+||+|++|.|+|.+-.|.++||++|+++++.+|..
T Consensus 11 fy~~p~q~~~~~~lv~d~g~n~nDt~dDs~~L~~Ain~~sr--~~~GG~l~lp~g~y~l~~I~m~SNVhievE~~~viyP 88 (464)
T d1h80a_ 11 FYVAPTQQDVNYDLVDDFGANGNDTSDDSNALQRAINAISR--KPNGGTLLIPNGTYHFLGIQMKSNVHIRVESDVIIKP 88 (464)
T ss_dssp TCCCCSCCSEEEEHHHHHCCCTTSSSBCHHHHHHHHHHHHT--STTCEEEEECSSEEEECSEECCTTEEEEECTTCEEEE
T ss_pred cccCcchhhccccchhhcccCCCcccCcHHHHHHHHHHhhc--CCCCcEEEEeCCcEEEEEEeeccceEEEEecCeEEee
Confidence 45556677777775 68999999999999999999999962 5799999999999999999999999999999988876
Q ss_pred cCCCCCCCcCCCCCCCCcccccCCCcceeeEEE---eeeeeEEEeccC--ceeeCCCcccccccccCCCCCCCCeeEEEE
Q 012788 109 SQNPSHWDVVDPLPSYGRGIELPGRRYKSLING---YMLRDVVVTGDN--GTIDGQGSVWWDWFSSQSLNYSRPHLVEFI 183 (456)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~---~~~~ni~I~G~~--GtidG~g~~ww~~~~~~~~~~~rp~~i~~~ 183 (456)
..+... +.. -++.+ +.++|+.|.|.+ -+||-.+.. .. .-..+.+.
T Consensus 89 T~~~d~------------------KNh-rlF~fg~~n~veN~si~g~G~~FtID~~~n~----------~k-N~~~v~lg 138 (464)
T d1h80a_ 89 TWNGDG------------------KNH-RLFEVGVNNIVRNFSFQGLGNGFLVDFKDSR----------DK-NLAVFKLG 138 (464)
T ss_dssp CCCTTC------------------SCE-EEEEESSSSCEEEEEEEECTTCEEEECTTCS----------CC-BEEEEEEC
T ss_pred cCCCCc------------------ccc-eeeeecccceeeeEEEEecCCcEEEEcccCC----------CC-ceeeEEee
Confidence 433111 111 13332 368899999862 166644311 00 01346777
Q ss_pred eeccEEEEeEEEEeCCcc--eEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCCCCcc
Q 012788 184 SSENVVVSNLTFLNAPAY--NIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEY 261 (456)
Q Consensus 184 ~~~nv~I~~v~i~ns~~~--~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~ 261 (456)
+++|+.|++++|++...- .|.+ +++=.+ .+ .+ ..++-.|++..-.+..-| |
T Consensus 139 ~V~nfkIsnf~I~DnkT~~asIlv---------df~dk~------g~-~~--~p~kGiIenIkq~~AhtG---------Y 191 (464)
T d1h80a_ 139 DVRNYKISNFTIDDNKTIFASILV---------DVTERN------GR-LH--WSRNGIIERIKQNNALFG---------Y 191 (464)
T ss_dssp SEEEEEEEEEEEECCSCBSCSEEE---------CEEEET------TE-EE--EEEEEEEEEEEEESCCTT---------C
T ss_pred eeeeeeeeeeeeccCceEEEEEEE---------eeeccc------CC-cC--CCccchhhhhhhcCcccc---------c
Confidence 899999999999886431 2222 111111 11 11 123344565554432111 2
Q ss_pred ccccCCCcccEEEEEEEEecCCCCeeEeccc-------ccCcEEeEEEEeEEEECCcceEEEEecCCCCceEEeEEEEce
Q 012788 262 GIAYGRPTTDVHIRRVLLQSSSGSSVAFGSE-------MSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIRQIVISDA 334 (456)
Q Consensus 262 g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~-------~~~~v~nI~v~n~~~~~~~~gi~iks~~g~~g~v~nI~~~ni 334 (456)
|.-......+|+|+|..+.+ +-++++... ..+++++|.+.|+.+.+.-.++.++.+- -...+|+++||
T Consensus 192 GlIQ~YggD~Ilf~nl~~~g--GI~lRLEtdn~~mkN~kk~Gm~~IfatNIk~TnGlt~Vml~PHf---~~ngdVsv~nI 266 (464)
T d1h80a_ 192 GLIQTYGADNILFRNLHSEG--GIALRMETDNLLMKNYKQGGIRNIFADNIRCSKGLAAVMFGPHF---MKNGDVQVTNV 266 (464)
T ss_dssp EEEEESEEEEEEEEEEEEES--SEEEEEECCCHHHHHHTCCEEEEEEEEEEEEESSSEEEEEECTT---CBCCCEEEEEE
T ss_pred eEEEeeccceEEEccccccC--CeEEEEecCCchhhhhhhcchhhheeeeeeecCCccceeeccch---hccCceEEEEE
Confidence 22222237999999999986 566666543 1468999999999999999999998762 34467999999
Q ss_pred EecCcceeEEEec
Q 012788 335 ELYNINVAFGACG 347 (456)
Q Consensus 335 ~~~~~~~~i~i~~ 347 (456)
+..++..++.+..
T Consensus 267 tAi~cg~Avrv~~ 279 (464)
T d1h80a_ 267 SSVSCGSAVRSDS 279 (464)
T ss_dssp EEESSSCSEEECC
T ss_pred EeecceeeEEecc
Confidence 9999998888754
|
| >d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Dextranase, catalytic domain domain: Dextranase, catalytic domain species: Penicillium minioluteum [TaxId: 28574]
Probab=99.54 E-value=2.6e-13 Score=134.02 Aligned_cols=258 Identities=11% Similarity=0.036 Sum_probs=163.3
Q ss_pred CCCcEEEecCCceeeeeeEeccceEEEeccCcEEEecCCCCCCCcCCCCCCCCccccc-CCCcceeeEEEeeeeeEEEec
Q 012788 73 KGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIEL-PGRRYKSLINGYMLRDVVVTG 151 (456)
Q Consensus 73 ~gg~~v~iP~G~Yl~g~l~L~s~~tL~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~i~~~~~~ni~I~G 151 (456)
.....+|+++|.|+.+.+.......+.+...++|.+.. ...|..... . +....+. .......++.+.+++|+.|.|
T Consensus 62 ~~~~~~y~~~G~~~~~~i~~~~~~nv~I~G~G~idG~G-~~~~~~~~~-~-~~~~~~~~~~~~~~~~i~~~~~~n~~i~g 138 (373)
T d1ogmx2 62 SNTYWVYLAPGAYVKGAIEYFTKQNFYATGHGILSGEN-YVYQANAGD-N-YIAVKSDSTSLRMWWHNNLGGGQTWYCVG 138 (373)
T ss_dssp TTCCEEEECTTEEEESCEEECCSSCEEEESSCEEECTT-SCTTCBTTT-T-TBSCCCTTTBCCSEEESCCCSSEEEEEES
T ss_pred cCceEEecCCCcEEEeEEEecCcceEEEEcceEEcCCc-ceecccccc-c-ccccccCCcccCCceEEEEEcceEEEEeC
Confidence 34567899999987777776643334444457887643 223321110 0 0000000 011123466778999999999
Q ss_pred cCceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEEeCCcc-----eEEeecccceEEEEEEEECCCCCCC
Q 012788 152 DNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAY-----NIHPVYCSNVHIQNISVHAPPESPY 226 (456)
Q Consensus 152 ~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~-----~i~~~~~~nv~i~n~~i~~~~~~~n 226 (456)
- ++.-. ..| .+.+..|++++++++++++.+.| ++++ |++++|+|+.+.+.
T Consensus 139 i--ti~~s--~~~--------------~~~~~~~~~v~i~~~~i~~~~~~~~n~dgi~~--~~~~~i~~~~~~~g----- 193 (373)
T d1ogmx2 139 P--TINAP--PFN--------------TMDFNGNSGISSQISDYKQVGAFFFQTDGPEI--YPNSVVHDVFWHVN----- 193 (373)
T ss_dssp C--EEECC--SSC--------------CEEECSSSCEEEEEEEEEEECCCSTTCCCCBC--CTTCEEEEEEEEES-----
T ss_pred E--EEECC--Cee--------------EEEEccCCeEEEEEEEEEecCCCCCCCeeeec--cCCEEEEeeEEecC-----
Confidence 4 55422 122 37888999999999999876543 4554 88999999999974
Q ss_pred CceeeecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeE-----------------e
Q 012788 227 TVGIVPDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVA-----------------F 289 (456)
Q Consensus 227 ~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~-----------------i 289 (456)
.|+|.+. +.+++|+||++....-+..+..|+ .+...+|++|+||++.+. ..... .
T Consensus 194 DD~i~~~-s~~i~v~n~~~~~~~~~~~~~~g~------~g~~i~nv~v~ni~v~~~-~~~~~~~~~~~~~~~~~~~~~~~ 265 (373)
T d1ogmx2 194 DDAIKIY-YSGASVSRATIWKCHNDPIIQMGW------TSRDISGVTIDTLNVIHT-RYIKSETVVPSAIIGASPFYASG 265 (373)
T ss_dssp SCSEECC-STTCEEEEEEEEECSSSCSEECCS------SCCCEEEEEEEEEEEEEC-CCSSCCTTTTCEEEEECCCSSSS
T ss_pred CCEEEec-CCCEEEEEEEEECCCceeEEEecc------CCCCcceeEEEeeEEECc-eeccccccccccccccccceeee
Confidence 5889885 579999999999854443222221 123479999999998754 21111 1
Q ss_pred cccccCcEEeEEEEeEEEECCcceEEEEec-C-CCCceEEeEEEEceEecCcc-eeEEEeccCCCCCCCCCCCCCCCeEE
Q 012788 290 GSEMSGGISNVQVEKIHLYDSLNGIEFRTT-K-GRGGYIRQIVISDAELYNIN-VAFGACGNCGSHPDDDFDPDALPAID 366 (456)
Q Consensus 290 gs~~~~~v~nI~v~n~~~~~~~~gi~iks~-~-g~~g~v~nI~~~ni~~~~~~-~~i~i~~~y~~~~~~~~~~~~~~~i~ 366 (456)
.....+.++||+|+|++|.+...++-+-.. . ...+.++||+|+|+++++.. .+..+..... ..++
T Consensus 266 ~~~~~g~v~ni~f~nI~~~~~~~~~i~~~~~~~~~~~~i~nV~i~nI~~~~~~~~~~~~~~~~~------------~~~~ 333 (373)
T d1ogmx2 266 MSPDSRKSISMTVSNVVCEGLCPSLFRITPLQNYKNFVVKNVAFPDGLQTNSIGTGESIIPAAS------------GLTM 333 (373)
T ss_dssp CCCEEEEEEEEEEEEEEECSSBCEEEEECCSEEEEEEEEEEEEETTCBCCSTTCTTCEEECCCT------------TCCE
T ss_pred ccCCCeEEEeEEEEeEEEECcccCeEEEEEcCCCCCCccceEEEEeeEEEeccCceeEEeeccc------------CCcC
Confidence 111234699999999999998877543322 1 12478999999999988764 4444433211 1467
Q ss_pred EEEEEEEEeecc
Q 012788 367 QITFKDIIGTNI 378 (456)
Q Consensus 367 nIt~~nI~~~~~ 378 (456)
+++|+||++.+.
T Consensus 334 ~~~~~Ni~i~~~ 345 (373)
T d1ogmx2 334 GLAISAWTIGGQ 345 (373)
T ss_dssp EEEEEEEEETTE
T ss_pred CeEEeCeEEeCe
Confidence 777777777653
|
| >d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Erwinia chrysanthemi, type C [TaxId: 556]
Probab=98.81 E-value=6.3e-09 Score=101.17 Aligned_cols=127 Identities=13% Similarity=0.017 Sum_probs=91.3
Q ss_pred EEeeccEEEEeEEEEeCCcceEEeecccceEEEEEEEECC-CCCCCCceeeecCccCEEEEecEEecCCc-eEecCCCCC
Q 012788 182 FISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAP-PESPYTVGIVPDSSDNVCIEDCIIAMGHD-AISLKSGWD 259 (456)
Q Consensus 182 ~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~-~~~~n~DGi~~~~s~nV~I~n~~i~~gDD-~iai~sg~~ 259 (456)
...++++++.|.+.... .|+|++.+|+||.|+|++|+.. .+..+.|+|.+.+++||.|++|.+..+.| ++.+.....
T Consensus 85 ~~~~~~i~i~G~~~~~~-~~gl~i~~~~nViirnl~i~~~~~~~~~~D~i~~~~~~~vwIDH~s~s~~~d~~~~~~~~~~ 163 (353)
T d1o88a_ 85 KEFTKGITIIGANGSSA-NFGIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDT 163 (353)
T ss_dssp ESBCSCEEEEECTTCCB-SSEEEEESCCSEEEESCEEECCSCGGGTCCSEEEESCCSEEEESCEEECCSCCCTTCGGGTC
T ss_pred EecCCCEEEEcCCCccc-cceEEEeccceEEEeCcEEecCCCCCCCCcEEEEecccEEEEEccEEeccccccccccCccc
Confidence 34567788877665544 4899999999999999999863 34667899999999999999999987543 333221100
Q ss_pred -ccc-cccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECC
Q 012788 260 -EYG-IAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDS 310 (456)
Q Consensus 260 -~~g-~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~ 310 (456)
.++ ..+.+++.+|+|.++++.+. ..+.-+|+.....-.+|++.++.|.+.
T Consensus 164 ~~~~~~di~~~~~~vTis~n~~~~~-~k~~l~g~~~~~~~~~vT~hhN~~~~~ 215 (353)
T d1o88a_ 164 TFESAVDIKGASNTVTVSYNYIHGV-KKVGLDGSSSSDTGRNITYHHNYYNDV 215 (353)
T ss_dssp SSCCSEEEESSCCEEEEESCEEEEE-EECCEESSSSSCCCCEEEEESCEEEEE
T ss_pred cceeeEEeccCcccEEEECcccccc-cccceeCCccCcCCceEEEEeeEEcCC
Confidence 011 12345689999999999865 455667765544556899999998764
|
| >d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Chondroitinase B domain: Chondroitinase B species: Pedobacter heparinus [TaxId: 984]
Probab=98.56 E-value=6.1e-07 Score=90.33 Aligned_cols=34 Identities=9% Similarity=0.171 Sum_probs=27.1
Q ss_pred chHHHHHHHHHHhhccccCCCcEEEecCCceeeeeeEec
Q 012788 55 LNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLT 93 (456)
Q Consensus 55 ddT~Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl~g~l~L~ 93 (456)
.+.+.||+||+.| ++|.+|+|++|+|.-..|.++
T Consensus 4 ~~~~tiq~Ai~~a-----~pGDtI~l~~GtY~~~~i~~~ 37 (481)
T d1ofla_ 4 ASNETLYQVVKEV-----KPGGLVQIADGTYKDVQLIVS 37 (481)
T ss_dssp CSHHHHHHHHHHC-----CTTCEEEECSEEEETCEEEEC
T ss_pred CChHHHHHHHHhC-----CCCCEEEECCCEEEcCEEEec
Confidence 3568999999987 689999999999964444443
|
| >d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate transeliminase domain: Pectate transeliminase species: Erwinia chrysanthemi [TaxId: 556]
Probab=98.14 E-value=8e-05 Score=71.61 Aligned_cols=45 Identities=13% Similarity=0.242 Sum_probs=31.2
Q ss_pred CCCceEEEeecCc-cCCCCCchHH--HHHHHHHHhhccccCCCcEEEecCCcee
Q 012788 36 PRPHSVSITEFGA-VGDGKTLNTL--AFQNAIFYLKSFADKGGAQLYVPSGKWL 86 (456)
Q Consensus 36 ~~~~~~~v~dfGA-~gDG~tddT~--Aiq~Ai~~a~~~~~~gg~~v~iP~G~Yl 86 (456)
..++++-|..-|. .+||. .+.+ -||+|++.| ..|.||+|.+|+|.
T Consensus 12 ~~~~~~YVs~~Gsd~~~Gs-~~~p~~tIq~Ai~~a-----~~GDtI~v~~GtY~ 59 (400)
T d1ru4a_ 12 STKRIYYVAPNGNSSNNGS-SFNAPMSFSAAMAAV-----NPGELILLKPGTYT 59 (400)
T ss_dssp CCSCEEEECTTCCTTCCSS-STTSCBCHHHHHHHC-----CTTCEEEECSEEEE
T ss_pred ccCCeEEECCCCcCCCCCC-ccccHHHHHHHHHhC-----CCcCEEEEcCceee
Confidence 4456666765442 34553 3433 399999986 67899999999995
|
| >d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectin lyase domain: Pectin lyase species: Aspergillus niger, type A [TaxId: 5061]
Probab=97.94 E-value=2.2e-05 Score=75.68 Aligned_cols=94 Identities=22% Similarity=0.224 Sum_probs=59.4
Q ss_pred cccceEEEEEEEECCC--CCCCCceeeecCccCEEEEecEEec-CCceEecCCCCCccccccCCCcccEEEEEEEEecCC
Q 012788 207 YCSNVHIQNISVHAPP--ESPYTVGIVPDSSDNVCIEDCIIAM-GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSS 283 (456)
Q Consensus 207 ~~~nv~i~n~~i~~~~--~~~n~DGi~~~~s~nV~I~n~~i~~-gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~ 283 (456)
.++||.|+|++|+... ...+.|+|.+..++||.|++|.+.. +|+.+..... .+.+|+|++|.+....
T Consensus 131 ~~~NVIiRNl~i~~~~~~~~~~~DaI~i~~s~nVwIDH~s~s~~~d~~~~~~~~----------~s~~vTis~~~~~~~~ 200 (359)
T d1idka_ 131 GAENIIIQNIAVTDINPKYVWGGDAITLDDCDLVWIDHVTTARIGRQHYVLGTS----------ADNRVSLTNNYIDGVS 200 (359)
T ss_dssp TCEEEEEESCEEEEECTTEETSCCSEEECSCEEEEEESCEEEEESSCSEEECCC----------TTCEEEEESCEEECBC
T ss_pred cCceEEEECcEEecCCCCCCCCCCeEEeeCCccEEEEeeeeccCCCCceeeecc----------CCCceeeeceeeeccc
Confidence 4556666666665421 2335699999999999999999976 5665543221 2789999999996431
Q ss_pred CCeeEe-ccc-----ccCcEEeEEEEeEEEECC
Q 012788 284 GSSVAF-GSE-----MSGGISNVQVEKIHLYDS 310 (456)
Q Consensus 284 ~~gi~i-gs~-----~~~~v~nI~v~n~~~~~~ 310 (456)
...+.- +.. ..+.-.+|++.++.|.+.
T Consensus 201 ~~~~~~~g~~~~~~~~~~~~~~vT~hhN~f~~~ 233 (359)
T d1idka_ 201 DYSATCDGYHYWAIYLDGDADLVTMKGNYIYHT 233 (359)
T ss_dssp SCBTTSSSBBSCCEEECCSSCEEEEESCEEESB
T ss_pred cccccccccccCCceecCCCccEEEEeeEEccC
Confidence 111111 110 113345799999999865
|
| >d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectin lyase domain: Pectin lyase species: Aspergillus niger, type B [TaxId: 5061]
Probab=97.80 E-value=9.3e-05 Score=71.05 Aligned_cols=141 Identities=21% Similarity=0.122 Sum_probs=83.3
Q ss_pred cccceEEEEEEEECCC--CCCCCceeeecCccCEEEEecEEec-CCceEe-cCCCCCccccccCCCcccEEEEEEEEecC
Q 012788 207 YCSNVHIQNISVHAPP--ESPYTVGIVPDSSDNVCIEDCIIAM-GHDAIS-LKSGWDEYGIAYGRPTTDVHIRRVLLQSS 282 (456)
Q Consensus 207 ~~~nv~i~n~~i~~~~--~~~n~DGi~~~~s~nV~I~n~~i~~-gDD~ia-i~sg~~~~g~~~~~~s~ni~I~n~~~~~~ 282 (456)
.++||.|+|++|+... ...+.|+|.+..++||.|++|.+.. +||++. ++. .+.+|+|++|.|...
T Consensus 131 ~~~NVIirnl~ir~~~~~~~~~~Dai~i~~s~nvwIDH~s~s~~~d~~~~~~~~-----------~s~~vTvs~~~f~~~ 199 (359)
T d1qcxa_ 131 GAKNVIIQNIAVTDINPKYVWGGDAITVDDSDLVWIDHVTTARIGRQHIVLGTS-----------ADNRVTISYSLIDGR 199 (359)
T ss_dssp TCCCEEEESCEEEEECTTEETSCCSEEEESCCCEEEESCEEEEESSCSEEECSS-----------CCEEEEEESCEEECB
T ss_pred CCccEEEeCeEEecCCCCCCCCCCeEEeeCCCCEEEEeeeccccCCCceEeecc-----------CCCceEeeccEeccC
Confidence 4555666666654321 1235699999999999999999965 777764 333 278999999999764
Q ss_pred CCCeeEeccc-------ccCcEEeEEEEeEEEECCc-ceEEEEecCCCCceEEeEEEEceEecCc-ceeEEEeccCCCCC
Q 012788 283 SGSSVAFGSE-------MSGGISNVQVEKIHLYDSL-NGIEFRTTKGRGGYIRQIVISDAELYNI-NVAFGACGNCGSHP 353 (456)
Q Consensus 283 ~~~gi~igs~-------~~~~v~nI~v~n~~~~~~~-~gi~iks~~g~~g~v~nI~~~ni~~~~~-~~~i~i~~~y~~~~ 353 (456)
.....++.. ....-.+|++.++.+.+.. +.-+++- | ..+.+.|..+.+. .+++...+.
T Consensus 200 -~~~~~~~~~~~~~~~~~~~~~~~vT~hhN~~~~~~~R~P~~r~-----g--~~~hv~NN~~~n~~~~~~~~~~~----- 266 (359)
T d1qcxa_ 200 -SDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKVQG-----N--TLLHAVNNLFHNFDGHAFEIGTG----- 266 (359)
T ss_dssp -CSSBTTSSSBBSCCEEECCSSEEEEEESCEEESBCSCTTEECS-----S--EEEEEESCEEEEEEEEEEEECTT-----
T ss_pred -ccccccccccCCCCceecCCCceEEEEeeeccCCCCCCccccC-----C--ceEEEEeeEEeCcCCEEEecCCc-----
Confidence 222222211 1234457999999998753 3334421 1 1234445555543 234443221
Q ss_pred CCCCCCCCCCeEEEEEEEEEEeecc
Q 012788 354 DDDFDPDALPAIDQITFKDIIGTNI 378 (456)
Q Consensus 354 ~~~~~~~~~~~i~nIt~~nI~~~~~ 378 (456)
.. ..+++-.|++......
T Consensus 267 ------~~-v~~e~N~F~~~~~~~~ 284 (359)
T d1qcxa_ 267 ------GY-VLAEGNVFQDVNVVVE 284 (359)
T ss_dssp ------EE-EEEESCEEEEEEEEEC
T ss_pred ------eE-EEEEeeEEECCCCccc
Confidence 11 3677778888766543
|
| >d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Erwinia chrysanthemi, type C [TaxId: 556]
Probab=97.76 E-value=0.00014 Score=69.60 Aligned_cols=147 Identities=14% Similarity=0.031 Sum_probs=96.8
Q ss_pred eeEEEEeeccEEEEeEEEEeCCc-----ceEEeecccceEEEEEEEECCCCC--------CCCce-eee-cCccCEEEEe
Q 012788 178 HLVEFISSENVVVSNLTFLNAPA-----YNIHPVYCSNVHIQNISVHAPPES--------PYTVG-IVP-DSSDNVCIED 242 (456)
Q Consensus 178 ~~i~~~~~~nv~I~~v~i~ns~~-----~~i~~~~~~nv~i~n~~i~~~~~~--------~n~DG-i~~-~~s~nV~I~n 242 (456)
..|++.+++||.|++++|++.+. ..|.+..|++|.|++|++....+. .-+|| +++ ..+.+|+|.+
T Consensus 103 ~gl~i~~~~nViirnl~i~~~~~~~~~~D~i~~~~~~~vwIDH~s~s~~~d~~~~~~~~~~~~~~~~di~~~~~~vTis~ 182 (353)
T d1o88a_ 103 FGIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSY 182 (353)
T ss_dssp SEEEEESCCSEEEESCEEECCSCGGGTCCSEEEESCCSEEEESCEEECCSCCCTTCGGGTCSSCCSEEEESSCCEEEEES
T ss_pred ceEEEeccceEEEeCcEEecCCCCCCCCcEEEEecccEEEEEccEEeccccccccccCccccceeeEEeccCcccEEEEC
Confidence 45888999999999999997553 579999999999999999865431 11344 233 3578999999
Q ss_pred cEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECC-cceEEEEecCC
Q 012788 243 CIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDS-LNGIEFRTTKG 321 (456)
Q Consensus 243 ~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~-~~gi~iks~~g 321 (456)
+++...+.+..+..+.. ....+|++.++.+.+...+.-.+.. + .+.+.|+.+.+. .+++.....
T Consensus 183 n~~~~~~k~~l~g~~~~-------~~~~~vT~hhN~~~~~~~R~P~~~~----g--~~h~~NN~~~n~~~~~~~~~~~-- 247 (353)
T d1o88a_ 183 NYIHGVKKVGLDGSSSS-------DTGRNITYHHNYYNDVNARLPLQRG----G--LVHAYNNLYTNITGSGLNVRQN-- 247 (353)
T ss_dssp CEEEEEEECCEESSSSS-------CCCCEEEEESCEEEEEEECSCEEES----S--EEEEESCEEEEESSCSEEEETT--
T ss_pred cccccccccceeCCccC-------cCCceEEEEeeEEcCCccCCcceec----c--eEEEEEEEEecccceEEecCCC--
Confidence 99986544444443211 1145788888888753222223331 1 377888888764 345544321
Q ss_pred CCceEEeEEEEceEecCcceeEE
Q 012788 322 RGGYIRQIVISDAELYNINVAFG 344 (456)
Q Consensus 322 ~~g~v~nI~~~ni~~~~~~~~i~ 344 (456)
..+.+|+..++++..|+.
T Consensus 248 -----~~~~~e~N~f~~~~~p~~ 265 (353)
T d1o88a_ 248 -----GQALIENNWFEKAINPVT 265 (353)
T ss_dssp -----CEEEEESCEEEEEESSEE
T ss_pred -----ceEEEEeeEEecccCCcc
Confidence 356777777777666654
|
| >d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Major pollen allergen Jun a 1 species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]
Probab=97.74 E-value=3e-05 Score=74.23 Aligned_cols=111 Identities=13% Similarity=0.114 Sum_probs=76.8
Q ss_pred EEEEeeccEEEEeEEEEeCCc---ceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEec-CCceEecC
Q 012788 180 VEFISSENVVVSNLTFLNAPA---YNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAM-GHDAISLK 255 (456)
Q Consensus 180 i~~~~~~nv~I~~v~i~ns~~---~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-gDD~iai~ 255 (456)
+.+...+||.|++++|++... ..+......+. .+....+.|+|.+..++||.|++|.+.. .|..+.++
T Consensus 108 i~i~~~~NVIirnl~i~~~~~~~~~~~~~~~~~~~--------~~~~~~~gDai~i~~s~nvwIDH~s~s~~~D~~idi~ 179 (346)
T d1pxza_ 108 LFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGV--------EPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVT 179 (346)
T ss_dssp EEEESCEEEEEESCEEECCCCCCSEEEEEETTTEE--------EEECCCCCCSEEEESCEEEEEESCEEECCSSEEEEEE
T ss_pred EEEecCCEEEEeceEEecCcccCCcccccccccCc--------cccccCCCceeeeecCceEEEECcEeeccccCceeEe
Confidence 667778899999999987542 12222222111 0111335799999999999999999987 67777776
Q ss_pred CCCCccccccCCCcccEEEEEEEEecCCCCeeEeccccc---CcEEeEEEEeEEEECC
Q 012788 256 SGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMS---GGISNVQVEKIHLYDS 310 (456)
Q Consensus 256 sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~---~~v~nI~v~n~~~~~~ 310 (456)
.+ +.+|+|++|+|... ..+..+|+... ..-.+|++.++.+.+.
T Consensus 180 ~~-----------s~~vTis~~~f~~~-~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n 225 (346)
T d1pxza_ 180 LG-----------STGITISNNHFFNH-HKVMLLGHDDTYDDDKSMKVTVAFNQFGPN 225 (346)
T ss_dssp SS-----------CEEEEEESCEEESE-EEEEEESCCSSCGGGGGCEEEEESCEECSS
T ss_pred cC-----------CEEEEEEeeEEccC-ccccccCCCcccccCCCceEEEEccccCCC
Confidence 64 89999999999865 55666666532 2345789988887643
|
| >d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectin lyase domain: Pectin lyase species: Aspergillus niger, type A [TaxId: 5061]
Probab=97.49 E-value=0.00053 Score=65.62 Aligned_cols=170 Identities=16% Similarity=0.217 Sum_probs=100.6
Q ss_pred EEEeccCceeeCCCcccccccccCCCCCCCCeeEEE-EeeccEEEEeEEEEeCC------cceEEeecccceEEEEEEEE
Q 012788 147 VVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEF-ISSENVVVSNLTFLNAP------AYNIHPVYCSNVHIQNISVH 219 (456)
Q Consensus 147 i~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~-~~~~nv~I~~v~i~ns~------~~~i~~~~~~nv~i~n~~i~ 219 (456)
|.+. ++=||.|+|...-- ....+.+ ..++||.|++|+|++.. ...|.+..+++|.|++|++.
T Consensus 104 i~v~-sn~TI~G~g~~~~i----------~g~g~~i~~~~~NVIiRNl~i~~~~~~~~~~~DaI~i~~s~nVwIDH~s~s 172 (359)
T d1idka_ 104 ITVT-SNKSLIGEGSSGAI----------KGKGLRIVSGAENIIIQNIAVTDINPKYVWGGDAITLDDCDLVWIDHVTTA 172 (359)
T ss_dssp EEEC-SSEEEEECTTTCEE----------ESCCEEECTTCEEEEEESCEEEEECTTEETSCCSEEECSCEEEEEESCEEE
T ss_pred eEeC-CCceEEeccCCeEE----------ecCceEEEecCceEEEECcEEecCCCCCCCCCCeEEeeCCccEEEEeeeec
Confidence 5553 35789988754311 1223555 46899999999998753 25788999999999999997
Q ss_pred CCCCCCCCcee-e-ecCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcE
Q 012788 220 APPESPYTVGI-V-PDSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGI 297 (456)
Q Consensus 220 ~~~~~~n~DGi-~-~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v 297 (456)
...+ +.+ + ...+++|+|.+|.|...++-.....+....+........+|++.++.+.+...+.-++...
T Consensus 173 ~~~d----~~~~~~~~~s~~vTis~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vT~hhN~f~~~~~R~P~~r~g----- 243 (359)
T d1idka_ 173 RIGR----QHYVLGTSADNRVSLTNNYIDGVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYHTSGRSPKVQDN----- 243 (359)
T ss_dssp EESS----CSEEECCCTTCEEEEESCEEECBCSCBTTSSSBBSCCEEECCSSCEEEEESCEEESBCSCTTEECTT-----
T ss_pred cCCC----CceeeeccCCCceeeeceeeeccccccccccccccCCceecCCCccEEEEeeEEccCCCCCceeccc-----
Confidence 6321 222 2 3467889999999975433222222211111112233578999999998653444444421
Q ss_pred EeEEEEeEEEECCc-ceEEEEecCCCCceEEeEEEEceEecCcceeE
Q 012788 298 SNVQVEKIHLYDSL-NGIEFRTTKGRGGYIRQIVISDAELYNINVAF 343 (456)
Q Consensus 298 ~nI~v~n~~~~~~~-~gi~iks~~g~~g~v~nI~~~ni~~~~~~~~i 343 (456)
..+++.|+.+.+.. .++... .+ ..+.+|+..++++..|+
T Consensus 244 ~~~hv~NN~~~n~~~~~i~~~--~~-----~~i~~e~N~F~~~~~p~ 283 (359)
T d1idka_ 244 TLLHAVNNYWYDISGHAFEIG--EG-----GYVLAEGNVFQNVDTVL 283 (359)
T ss_dssp CEEEEESCEEEEEEEEEEEEC--TT-----CEEEEESCEEEEEEEEE
T ss_pred ceEEEECcEEECccceEEecC--Cc-----eeEEEeceEEeCCcCCc
Confidence 23567777776532 233222 11 34556666666655554
|
| >d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectin lyase domain: Pectin lyase species: Aspergillus niger, type B [TaxId: 5061]
Probab=97.48 E-value=0.0007 Score=64.72 Aligned_cols=169 Identities=16% Similarity=0.179 Sum_probs=103.7
Q ss_pred EEEeccCceeeCCCcccccccccCCCCCCCCeeEEE-EeeccEEEEeEEEEeCC------cceEEeecccceEEEEEEEE
Q 012788 147 VVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEF-ISSENVVVSNLTFLNAP------AYNIHPVYCSNVHIQNISVH 219 (456)
Q Consensus 147 i~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~-~~~~nv~I~~v~i~ns~------~~~i~~~~~~nv~i~n~~i~ 219 (456)
|.|.- +=||+|+|..-. -....+.+ .+++||.|++++|++.. ...|.+..++||.|++|++.
T Consensus 104 i~v~s-n~TI~G~g~~~~----------i~g~g~~~~~~~~NVIirnl~ir~~~~~~~~~~Dai~i~~s~nvwIDH~s~s 172 (359)
T d1qcxa_ 104 ITVNS-NKSIVGQGTKGV----------IKGKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDAITVDDSDLVWIDHVTTA 172 (359)
T ss_dssp EECCS-SEEEEECTTCCE----------EESCCEEEETTCCCEEEESCEEEEECTTEETSCCSEEEESCCCEEEESCEEE
T ss_pred EEeCC-CCeEEeccCCeE----------EEccceEEEeCCccEEEeCeEEecCCCCCCCCCCeEEeeCCCCEEEEeeecc
Confidence 44433 468888875311 01122433 56899999999998743 35788899999999999997
Q ss_pred CCCCCCCCceee-e-cCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcE
Q 012788 220 APPESPYTVGIV-P-DSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGI 297 (456)
Q Consensus 220 ~~~~~~n~DGi~-~-~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v 297 (456)
... .|++. . ..+++|+|.+|.|...++...+..+....+........+|++.++.+.+...+.-++...
T Consensus 173 ~~~----d~~~~~~~~~s~~vTvs~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~vT~hhN~~~~~~~R~P~~r~g----- 243 (359)
T d1qcxa_ 173 RIG----RQHIVLGTSADNRVTISYSLIDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKVQGN----- 243 (359)
T ss_dssp EES----SCSEEECSSCCEEEEEESCEEECBCSSBTTSSSBBSCCEEECCSSEEEEEESCEEESBCSCTTEECSS-----
T ss_pred ccC----CCceEeeccCCCceEeeccEeccCccccccccccCCCCceecCCCceEEEEeeeccCCCCCCccccCC-----
Confidence 432 23443 2 346789999999987665554444332222222233567999999997643444444321
Q ss_pred EeEEEEeEEEECCc-ceEEEEecCCCCceEEeEEEEceEecCccee
Q 012788 298 SNVQVEKIHLYDSL-NGIEFRTTKGRGGYIRQIVISDAELYNINVA 342 (456)
Q Consensus 298 ~nI~v~n~~~~~~~-~gi~iks~~g~~g~v~nI~~~ni~~~~~~~~ 342 (456)
..++|.|+.+.+.. .++.. .. + ..+.+|+..+++...+
T Consensus 244 ~~~hv~NN~~~n~~~~~~~~--~~---~--~~v~~e~N~F~~~~~~ 282 (359)
T d1qcxa_ 244 TLLHAVNNLFHNFDGHAFEI--GT---G--GYVLAEGNVFQDVNVV 282 (359)
T ss_dssp EEEEEESCEEEEEEEEEEEE--CT---T--EEEEEESCEEEEEEEE
T ss_pred ceEEEEeeEEeCcCCEEEec--CC---c--eEEEEEeeEEECCCCc
Confidence 34678888887653 23332 21 1 3567777777766554
|
| >d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Major pollen allergen Jun a 1 species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]
Probab=97.44 E-value=0.0016 Score=61.76 Aligned_cols=122 Identities=15% Similarity=0.096 Sum_probs=67.7
Q ss_pred cceEEeecccceEEEEEEEECCCCCCCCce-eeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEE
Q 012788 200 AYNIHPVYCSNVHIQNISVHAPPESPYTVG-IVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRV 277 (456)
Q Consensus 200 ~~~i~~~~~~nv~i~n~~i~~~~~~~n~DG-i~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~ 277 (456)
..++.+..+++|.|++|++... .|| +++. .+++|+|++|.|.....+..+.+. +... ...-.+|++.++
T Consensus 150 gDai~i~~s~nvwIDH~s~s~~-----~D~~idi~~~s~~vTis~~~f~~~~~~~~~G~~-~~~~---~~~~~~vT~hhN 220 (346)
T d1pxza_ 150 GDAITMRNVTNAWIDHNSLSDC-----SDGLIDVTLGSTGITISNNHFFNHHKVMLLGHD-DTYD---DDKSMKVTVAFN 220 (346)
T ss_dssp CCSEEEESCEEEEEESCEEECC-----SSEEEEEESSCEEEEEESCEEESEEEEEEESCC-SSCG---GGGGCEEEEESC
T ss_pred CceeeeecCceEEEECcEeecc-----ccCceeEecCCEEEEEEeeEEccCccccccCCC-cccc---cCCCceEEEEcc
Confidence 3456666677777777777653 343 4443 478889999888765544444332 1110 111357888888
Q ss_pred EEecCCCCeeEecccccCcEEeEEEEeEEEECCc-ceEEEEecCCCCceEEeEEEEceEecCccee
Q 012788 278 LLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSL-NGIEFRTTKGRGGYIRQIVISDAELYNINVA 342 (456)
Q Consensus 278 ~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~-~gi~iks~~g~~g~v~nI~~~ni~~~~~~~~ 342 (456)
.+.....+...+. .-..++|.|+.+.+.. .++..... ..+.+|+..+++...+
T Consensus 221 ~~~~n~~r~~p~~-----r~g~~hv~NN~~~n~~~~~~~~~~~-------~~v~~e~N~F~~~~~~ 274 (346)
T d1pxza_ 221 QFGPNAGQRMPRA-----RYGLVHVANNNYDPWNIYAIGGSSN-------PTILSEGNSFTAPSES 274 (346)
T ss_dssp EECSSEEECTTEE-----ESSEEEEESCEECCCSSCSEEEESC-------CEEEEESCEEECCSCG
T ss_pred ccCCCcccCCCcc-----ccceEEEECcEeecCccEEEeccCc-------eEEEEEeeEEECCCCc
Confidence 7753201111111 1235788888888753 35543321 3567777777665544
|
| >d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Erwinia chrysanthemi, type E [TaxId: 556]
Probab=97.37 E-value=0.00057 Score=65.32 Aligned_cols=108 Identities=17% Similarity=0.184 Sum_probs=67.0
Q ss_pred eEEeecccceEEEEEEEECCCC-----------CCCCceeeecCccCEEEEecEEecC-CceEecCC--CCC---ccc-c
Q 012788 202 NIHPVYCSNVHIQNISVHAPPE-----------SPYTVGIVPDSSDNVCIEDCIIAMG-HDAISLKS--GWD---EYG-I 263 (456)
Q Consensus 202 ~i~~~~~~nv~i~n~~i~~~~~-----------~~n~DGi~~~~s~nV~I~n~~i~~g-DD~iai~s--g~~---~~g-~ 263 (456)
++.+.+++||.|+|++|+...+ ....|+|.+..++||.|++|.+..+ |.+..+.. +.. .++ .
T Consensus 97 gl~i~~a~NVIirnl~ir~~~~~~~~~~~g~~~~~~~D~i~~~~~~~vwIDHcs~s~~~d~~~~~~~~~~~~~~~~dg~~ 176 (355)
T d1pcla_ 97 SLVIKGVKNVILRNLYIETPVDVAPHYESGDGWNAEWDAAVIDNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGAL 176 (355)
T ss_pred EEEEEccccEEEEeeEeecCcccCCccccCCCcCccCceEEecCCccEEEECcccccCccccccccccccccccccccee
Confidence 3444455666666666654211 2346899999999999999999864 22222211 100 011 1
Q ss_pred ccCCCcccEEEEEEEEecCCCCeeEecccc-----cCcEEeEEEEeEEEECC
Q 012788 264 AYGRPTTDVHIRRVLLQSSSGSSVAFGSEM-----SGGISNVQVEKIHLYDS 310 (456)
Q Consensus 264 ~~~~~s~ni~I~n~~~~~~~~~gi~igs~~-----~~~v~nI~v~n~~~~~~ 310 (456)
.....+.+|+|++|.+... ..+.-+|+.. ..+..+|++.++.+.+.
T Consensus 177 d~~~~s~~vTiS~~~~~~~-~~~~l~G~~~~~~~~~~~~~~vT~hhNl~~~~ 227 (355)
T d1pcla_ 177 DIKKGSDYVTISYSRFELH-DKTILIGHSDSNGSQDSGKLRVTFHNNVFDRV 227 (355)
T ss_pred eeccceeeEEEeeeecCCc-ccceeecCCCCCccccCCcceEEEecccccCC
Confidence 2234589999999999865 4555566542 23456899999988765
|
| >d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Bacillus subtilis [TaxId: 1423]
Probab=97.23 E-value=0.0012 Score=63.80 Aligned_cols=73 Identities=12% Similarity=0.196 Sum_probs=49.6
Q ss_pred CCceeeecCccCEEEEecEEecC------------------CceEecCCCCCccccccCCCcccEEEEEEEEecCCCCee
Q 012788 226 YTVGIVPDSSDNVCIEDCIIAMG------------------HDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSV 287 (456)
Q Consensus 226 n~DGi~~~~s~nV~I~n~~i~~g------------------DD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi 287 (456)
..|+|.+..++||.|++|.|..+ |..+.++. .+.+|+|++|+|... ..+.
T Consensus 182 ~~DaI~i~~s~~VWIDH~t~s~~~~e~~~~~~~~~~~~~~~Dg~lDi~~-----------gs~~VTvS~n~f~~h-~k~~ 249 (399)
T d1bn8a_ 182 QYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASN-----------GANYITMSYNYYHDH-DKSS 249 (399)
T ss_dssp CCCSEEEESCEEEEEESCEEECTTCCGGGCCEETTEECCCCCCSEEEET-----------TCEEEEEESCEEEEE-EECC
T ss_pred CCceEEEecCccEEEECceeccCCcccccccccccccccccccceeecc-----------cceeEEeECccccCC-ccee
Confidence 36888888888999999998753 22334444 389999999998764 3444
Q ss_pred Eecccc----cCcEEeEEEEeEEEECC
Q 012788 288 AFGSEM----SGGISNVQVEKIHLYDS 310 (456)
Q Consensus 288 ~igs~~----~~~v~nI~v~n~~~~~~ 310 (456)
-+|+.. ..+-.+|+|.++.|.+.
T Consensus 250 L~G~~d~~~~d~g~~~vT~hhN~f~~~ 276 (399)
T d1bn8a_ 250 IFGSSDSKTSDDGKLKITLHHNRYKNI 276 (399)
T ss_dssp EECCCTTCGGGTTCCCEEEESCEEEEE
T ss_pred EecCCCCcccccCCceEEEEeeEecCc
Confidence 556542 12334688888888765
|
| >d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Erwinia chrysanthemi, type A [TaxId: 556]
Probab=97.23 E-value=0.00027 Score=67.71 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=63.8
Q ss_pred cccceEEEEEEEECCCC-----------CCCCceeeec-CccCEEEEecEEecC-CceEecCCCCC-----ccc-cccCC
Q 012788 207 YCSNVHIQNISVHAPPE-----------SPYTVGIVPD-SSDNVCIEDCIIAMG-HDAISLKSGWD-----EYG-IAYGR 267 (456)
Q Consensus 207 ~~~nv~i~n~~i~~~~~-----------~~n~DGi~~~-~s~nV~I~n~~i~~g-DD~iai~sg~~-----~~g-~~~~~ 267 (456)
..+||.|+|++|+...+ ....|+|.+. .++||.|++|.|..+ |.++.+..... .+| .....
T Consensus 112 ~~~NVIiRnl~ir~~~~~~~~~~~~~~~~~~~Dai~i~~~s~~VwIDH~s~s~~~~~~~~~~~~~~~~~~~~Dg~~di~~ 191 (361)
T d1pe9a_ 112 GTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKR 191 (361)
T ss_dssp TCEEEEEESCEEECCCCSSCEEETTTEEECCCCSEEEETTCEEEEEESCEEECTTSCGGGCCEETTEECCCCCCSEEECT
T ss_pred ccceEEEEeEEeecCccCCCccccCCCcccCCCeeEEecCCceEEEEccEeccCCccccccccccCcceeeeeeeEEeec
Confidence 34566677777665321 1246999985 589999999999863 22222211000 001 11223
Q ss_pred CcccEEEEEEEEecCCCCeeEeccccc-----CcEEeEEEEeEEEECC
Q 012788 268 PTTDVHIRRVLLQSSSGSSVAFGSEMS-----GGISNVQVEKIHLYDS 310 (456)
Q Consensus 268 ~s~ni~I~n~~~~~~~~~gi~igs~~~-----~~v~nI~v~n~~~~~~ 310 (456)
.+++|+|++|.|... ..+.-+|+... .+..+|++.++.+.++
T Consensus 192 ~s~~vTiS~~~f~~h-~~~~l~G~~d~~~~~d~g~~~vT~hhN~~~~~ 238 (361)
T d1pe9a_ 192 GSDYVTISNSLIDQH-DKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRV 238 (361)
T ss_dssp TCEEEEEESCEEEEE-EECEEESCCTTCHHHHTTCCEEEEESCEEEEE
T ss_pred CccceEecCCcccCC-CcceEeccCCCCccccCCcceEEEECccccCC
Confidence 489999999999864 45566665431 3456899999988764
|
| >d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Bacillus subtilis [TaxId: 1423]
Probab=97.23 E-value=0.00025 Score=68.82 Aligned_cols=144 Identities=15% Similarity=0.093 Sum_probs=84.6
Q ss_pred eEEEeccCceeeCCCcccccccccCCCCCCCCeeEEEEeeccEEEEeEEEEeCC-------------------cceEEee
Q 012788 146 DVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAP-------------------AYNIHPV 206 (456)
Q Consensus 146 ni~I~G~~GtidG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~~v~i~ns~-------------------~~~i~~~ 206 (456)
.|.+.- |=||.|+|..- .-+...|.+ +++||-|++|+|++.. ...|.+.
T Consensus 122 ~i~V~S-NkTIiG~G~~~----------~i~g~gl~i-~a~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~ 189 (399)
T d1bn8a_ 122 MVDIPA-NTTIVGSGTNA----------KVVGGNFQI-KSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITIN 189 (399)
T ss_dssp EEEECS-SEEEEECTTCC----------EEESCEEEE-CSEEEEEESCEEECCCCSSCEEETTSSSSCEEECCCCSEEEE
T ss_pred EEecCC-CceEEecCCCc----------EEeccEEEE-eCceEEEeCeEEEcCcccccccccccccccCcCCCCceEEEe
Confidence 355444 47888887521 112334665 6889999999998643 3458888
Q ss_pred cccceEEEEEEEECCCCC------------CCCce-eeec-CccCEEEEecEEecCCceEecCCCCCccccccCCCcccE
Q 012788 207 YCSNVHIQNISVHAPPES------------PYTVG-IVPD-SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDV 272 (456)
Q Consensus 207 ~~~nv~i~n~~i~~~~~~------------~n~DG-i~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni 272 (456)
.+++|.|++|++....+. .-.|| +++. .+++|+|.+|.|...+...-+.+. +.+.. .....+|
T Consensus 190 ~s~~VWIDH~t~s~~~~e~~~~~~~~~~~~~~~Dg~lDi~~gs~~VTvS~n~f~~h~k~~L~G~~-d~~~~--d~g~~~v 266 (399)
T d1bn8a_ 190 GGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSS-DSKTS--DDGKLKI 266 (399)
T ss_dssp SCEEEEEESCEEECTTCCGGGCCEETTEECCCCCCSEEEETTCEEEEEESCEEEEEEECCEECCC-TTCGG--GTTCCCE
T ss_pred cCccEEEECceeccCCcccccccccccccccccccceeecccceeEEeECccccCCcceeEecCC-CCccc--ccCCceE
Confidence 889999999998764320 01233 3333 468899999999875444444432 11110 1123468
Q ss_pred EEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECC
Q 012788 273 HIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDS 310 (456)
Q Consensus 273 ~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~ 310 (456)
++.++.|.+...+.=++. .+ .+++.|+.+.+.
T Consensus 267 T~hhN~f~~~~~R~Prvr----~g--~vHv~NNy~~n~ 298 (399)
T d1bn8a_ 267 TLHHNRYKNIVQRAPRVR----FG--QVHVYNNYYEGS 298 (399)
T ss_dssp EEESCEEEEEEECSSEES----SC--EEEEESCEEECC
T ss_pred EEEeeEecCccccCcccc----cc--EEEEEccEeECC
Confidence 888877765312222222 11 367778888765
|
| >d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectin methylesterase domain: Pectin methylesterase PemA species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.21 E-value=0.002 Score=61.01 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHhhccccCCC--cEEEecCCceeeeeeEe-ccceEEEec
Q 012788 56 NTLAFQNAIFYLKSFADKGG--AQLYVPSGKWLTGSFNL-TSHLTLFLE 101 (456)
Q Consensus 56 dT~Aiq~Ai~~a~~~~~~gg--~~v~iP~G~Yl~g~l~L-~s~~tL~l~ 101 (456)
+=..||+||+++. .+. -+|+|.+|+|.-. |.+ +++++|..+
T Consensus 17 ~f~TIq~AI~a~p----~~~~~~vI~I~~G~Y~E~-V~I~k~~itl~G~ 60 (342)
T d1qjva_ 17 TFKTIADAIASAP----AGSTPFVILIKNGVYNER-LTITRNNLHLKGE 60 (342)
T ss_dssp CBSSHHHHHHTSC----SSSSCEEEEECSEEECCC-EEECSTTEEEEES
T ss_pred CchhHHHHHHhCc----cCCceEEEEEcCeEEEEE-EEEcCCCeEEEEc
Confidence 5678999999872 222 2689999999743 333 456666654
|
| >d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectin methylesterase domain: Pectin methylesterase PemA species: Carrot (Daucus carota) [TaxId: 4039]
Probab=97.06 E-value=0.0093 Score=55.43 Aligned_cols=131 Identities=16% Similarity=0.186 Sum_probs=77.2
Q ss_pred eeccEEEEeEEEEeCCcc------eEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCC
Q 012788 184 SSENVVVSNLTFLNAPAY------NIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSG 257 (456)
Q Consensus 184 ~~~nv~I~~v~i~ns~~~------~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg 257 (456)
..+++.++|++|+|+... .+. ...+.+.+.+|+|... .|-+..... +-.++||+|+..-|-|- |
T Consensus 92 ~~~~f~a~nitf~Nt~g~~~~QAvAl~-v~gd~~~fy~c~f~G~-----QDTL~~~~g-r~yf~~c~IeG~vDFIf---G 161 (319)
T d1gq8a_ 92 VGAGFLARDITFQNTAGAAKHQAVALR-VGSDLSAFYRCDILAY-----QDSLYVHSN-RQFFINCFIAGTVDFIF---G 161 (319)
T ss_dssp CSTTCEEEEEEEEECCCGGGCCCCSEE-ECCTTEEEEEEEEECS-----TTCEEECSS-EEEEESCEEEESSSCEE---E
T ss_pred ecCCeEEEeeEEEeCCCCCCCcEEEEE-ecCcceEEEcceeccc-----CCeeEECCC-CEEEEeeEEEeeccEEe---c
Confidence 457899999999996421 233 3566788899998874 344554433 45788898887655442 1
Q ss_pred CCccccccCCCcccEEEEEEEEecCC-CC----eeEe-cccccCcEEeEEEEeEEEECCcc--------eEEEE-ecCCC
Q 012788 258 WDEYGIAYGRPTTDVHIRRVLLQSSS-GS----SVAF-GSEMSGGISNVQVEKIHLYDSLN--------GIEFR-TTKGR 322 (456)
Q Consensus 258 ~~~~g~~~~~~s~ni~I~n~~~~~~~-~~----gi~i-gs~~~~~v~nI~v~n~~~~~~~~--------gi~ik-s~~g~ 322 (456)
.-...+++|++.... .. .|.- ++.....-....|.||++.+... ...+. .|.
T Consensus 162 -----------~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~-- 228 (319)
T d1gq8a_ 162 -----------NAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWK-- 228 (319)
T ss_dssp -----------SCEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSS--
T ss_pred -----------CceeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCC--
Confidence 345667888876420 11 2332 11222234457888888876532 12222 221
Q ss_pred CceEEeEEEEceEecCc
Q 012788 323 GGYIRQIVISDAELYNI 339 (456)
Q Consensus 323 ~g~v~nI~~~ni~~~~~ 339 (456)
.-..+.|.+..|.+.
T Consensus 229 --~~s~vvf~~t~l~~~ 243 (319)
T d1gq8a_ 229 --EYSRTVVMQSSITNV 243 (319)
T ss_dssp --TTCEEEEESCEECTT
T ss_pred --CcceEEEEecccccc
Confidence 235677777777763
|
| >d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Erwinia chrysanthemi, type E [TaxId: 556]
Probab=96.59 E-value=0.015 Score=55.08 Aligned_cols=124 Identities=11% Similarity=0.051 Sum_probs=79.5
Q ss_pred eEEEEeeccEEEEeEEEEeCC---------------cceEEeecccceEEEEEEEECCCCCC------------CCcee-
Q 012788 179 LVEFISSENVVVSNLTFLNAP---------------AYNIHPVYCSNVHIQNISVHAPPESP------------YTVGI- 230 (456)
Q Consensus 179 ~i~~~~~~nv~I~~v~i~ns~---------------~~~i~~~~~~nv~i~n~~i~~~~~~~------------n~DGi- 230 (456)
.|.+.+++||.|++++|+... ...+.+..+++|.|+.|.+....+.. ..||.
T Consensus 97 gl~i~~a~NVIirnl~ir~~~~~~~~~~~g~~~~~~~D~i~~~~~~~vwIDHcs~s~~~d~~~~~~~~~~~~~~~~dg~~ 176 (355)
T d1pcla_ 97 SLVIKGVKNVILRNLYIETPVDVAPHYESGDGWNAEWDAAVIDNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGAL 176 (355)
T ss_pred EEEEEccccEEEEeeEeecCcccCCccccCCCcCccCceEEecCCccEEEECcccccCccccccccccccccccccccee
Confidence 477888999999999997532 34688889999999999997643210 12553
Q ss_pred ee-cCccCEEEEecEEecCCceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEEC
Q 012788 231 VP-DSSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYD 309 (456)
Q Consensus 231 ~~-~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~ 309 (456)
++ ..+.+|+|.+|.|...+-+..++... . +........+|++.++.+.+...+.-.+.. + .+.+.|+.+.+
T Consensus 177 d~~~~s~~vTiS~~~~~~~~~~~l~G~~~-~-~~~~~~~~~~vT~hhNl~~~~~~R~P~~r~----G--~~hv~NN~~~n 248 (355)
T d1pcla_ 177 DIKKGSDYVTISYSRFELHDKTILIGHSD-S-NGSQDSGKLRVTFHNNVFDRVTERAPRVRF----G--SIHAYNNVYLG 248 (355)
T ss_pred eeccceeeEEEeeeecCCcccceeecCCC-C-CccccCCcceEEEecccccCCcccCCcccc----c--EEEEECcEEEC
Confidence 33 24789999999998644443343321 1 111122357899999988754333333321 1 36778888776
Q ss_pred C
Q 012788 310 S 310 (456)
Q Consensus 310 ~ 310 (456)
.
T Consensus 249 ~ 249 (355)
T d1pcla_ 249 D 249 (355)
T ss_pred C
Confidence 4
|
| >d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Erwinia chrysanthemi, type A [TaxId: 556]
Probab=93.24 E-value=0.076 Score=50.03 Aligned_cols=95 Identities=13% Similarity=0.184 Sum_probs=59.9
Q ss_pred CccCEEEEecEEecC----------------CceEecCCCCCccccccCCCcccEEEEEEEEecCCCCeeEecccc----
Q 012788 234 SSDNVCIEDCIIAMG----------------HDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEM---- 293 (456)
Q Consensus 234 ~s~nV~I~n~~i~~g----------------DD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~---- 293 (456)
..+||.|+|.+|+.. .|+|.+.. .++||.|.+|.+....+..+.+....
T Consensus 112 ~~~NVIiRnl~ir~~~~~~~~~~~~~~~~~~~Dai~i~~-----------~s~~VwIDH~s~s~~~~~~~~~~~~~~~~~ 180 (361)
T d1pe9a_ 112 GTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITN-----------GAHHVWIDHVTISDGNFTDDMYTTKDGETY 180 (361)
T ss_dssp TCEEEEEESCEEECCCCSSCEEETTTEEECCCCSEEEET-----------TCEEEEEESCEEECTTSCGGGCCEETTEEC
T ss_pred ccceEEEEeEEeecCccCCCccccCCCcccCCCeeEEec-----------CCceEEEEccEeccCCccccccccccCcce
Confidence 457899999999863 24444433 38999999999975423333222110
Q ss_pred ---------cCcEEeEEEEeEEEECCcceEEEEecCCCC---ceEEeEEEEceEecCc
Q 012788 294 ---------SGGISNVQVEKIHLYDSLNGIEFRTTKGRG---GYIRQIVISDAELYNI 339 (456)
Q Consensus 294 ---------~~~v~nI~v~n~~~~~~~~gi~iks~~g~~---g~v~nI~~~ni~~~~~ 339 (456)
.....+|++++|.|.+...+.-+....... ..-.+|+|.+..+.++
T Consensus 181 ~~~Dg~~di~~~s~~vTiS~~~f~~h~~~~l~G~~d~~~~~d~g~~~vT~hhN~~~~~ 238 (361)
T d1pe9a_ 181 VQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRV 238 (361)
T ss_dssp CCCCCSEEECTTCEEEEEESCEEEEEEECEEESCCTTCHHHHTTCCEEEEESCEEEEE
T ss_pred eeeeeeEEeecCccceEecCCcccCCCcceEeccCCCCccccCCcceEEEECccccCC
Confidence 134689999999998876676665432110 1125677777777654
|
| >d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: iota-carrageenase domain: iota-carrageenase species: Alteromonas sp., atcc 43554 [TaxId: 232]
Probab=92.41 E-value=3.6 Score=36.83 Aligned_cols=95 Identities=12% Similarity=0.058 Sum_probs=66.8
Q ss_pred cccEEEEEEEEecCCCCeeEecccccCcEEeEEEEeEEEECCcceEEEEecCC-----CCceEEeEEEEceEecCcceeE
Q 012788 269 TTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKG-----RGGYIRQIVISDAELYNINVAF 343 (456)
Q Consensus 269 s~ni~I~n~~~~~~~~~gi~igs~~~~~v~nI~v~n~~~~~~~~gi~iks~~g-----~~g~v~nI~~~ni~~~~~~~~i 343 (456)
..+=.|+|+.-.+. .-|..+-.. -+-.+|.|+|....+. -++|+.+..+ ..+.+++|-..||...+--.|+
T Consensus 174 p~kGiIenIkq~~A-htGYGlIQ~--YggD~Ilf~nl~~~gG-I~lRLEtdn~~mkN~kk~Gm~~IfatNIk~TnGlt~V 249 (464)
T d1h80a_ 174 SRNGIIERIKQNNA-LFGYGLIQT--YGADNILFRNLHSEGG-IALRMETDNLLMKNYKQGGIRNIFADNIRCSKGLAAV 249 (464)
T ss_dssp EEEEEEEEEEEESC-CTTCEEEEE--SEEEEEEEEEEEEESS-EEEEEECCCHHHHHHTCCEEEEEEEEEEEEESSSEEE
T ss_pred CccchhhhhhhcCc-cccceEEEe--eccceEEEccccccCC-eEEEEecCCchhhhhhhcchhhheeeeeeecCCccce
Confidence 35556777776654 333322211 2456899999999875 5788887542 2355999999999999988999
Q ss_pred EEeccCCCCCCCCCCCCCCCeEEEEEEEEEEeeccce
Q 012788 344 GACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITI 380 (456)
Q Consensus 344 ~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~ 380 (456)
++..++. ...+|+++||+..+...
T Consensus 250 ml~PHf~-------------~ngdVsv~nItAi~cg~ 273 (464)
T d1h80a_ 250 MFGPHFM-------------KNGDVQVTNVSSVSCGS 273 (464)
T ss_dssp EEECTTC-------------BCCCEEEEEEEEESSSC
T ss_pred eeccchh-------------ccCceEEEEEEeeccee
Confidence 9987654 34588999999887543
|
| >d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Bacillus sp., strain ksmp15 [TaxId: 1409]
Probab=91.81 E-value=1.1 Score=37.54 Aligned_cols=41 Identities=29% Similarity=0.446 Sum_probs=24.6
Q ss_pred ceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEec-CCceEecCC
Q 012788 210 NVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAM-GHDAISLKS 256 (456)
Q Consensus 210 nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-gDD~iai~s 256 (456)
..+|+|+.|-.+ ..||||... +.+|+|++++. +.|++.+++
T Consensus 49 GaTlkNviIG~~----~adGIHc~G--~ctl~NV~wedVcEDA~T~k~ 90 (197)
T d1ee6a_ 49 GASLKNVVIGAP----AADGVHCYG--DCTITNVIWEDVGEDALTLKS 90 (197)
T ss_dssp TEEEEEEEECSS----CTTCEEEES--CEEEEEEEESSCCSCSEEEEE
T ss_pred CCEEEEEEEcCC----CCceEEEeC--cEEEEEEEeeecccccceecC
Confidence 345555555332 357777653 45677777766 677777765
|
| >d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Bacillus sp., strain ksmp15 [TaxId: 1409]
Probab=88.09 E-value=2 Score=35.94 Aligned_cols=111 Identities=13% Similarity=0.059 Sum_probs=70.4
Q ss_pred eeEEEEeeccEEEEeEEEEeCCcceEEeecccceEEEEEEEECCCCCCCCceeeecCccCEEEEecEEecCCceEecCCC
Q 012788 178 HLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQNISVHAPPESPYTVGIVPDSSDNVCIEDCIIAMGHDAISLKSG 257 (456)
Q Consensus 178 ~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~sg 257 (456)
.++.+ -+..+|+|+.|-.+...+||... +.+|+|+....- .-|.+-+.++..++|.+.-..+.+|-|-=..+
T Consensus 42 pvF~l--e~GaTlkNviIG~~~adGIHc~G--~ctl~NV~wedV----cEDA~T~k~~gt~~I~gGgA~~A~DKV~Q~Ng 113 (197)
T d1ee6a_ 42 PIFRL--EAGASLKNVVIGAPAADGVHCYG--DCTITNVIWEDV----GEDALTLKSSGTVNISGGAAYKAYDKVFQINA 113 (197)
T ss_dssp CSEEE--CTTEEEEEEEECSSCTTCEEEES--CEEEEEEEESSC----CSCSEEEEESEEEEEESCEEEEEEEEEEEECS
T ss_pred cEEEE--cCCCEEEEEEEcCCCCceEEEeC--cEEEEEEEeeec----ccccceecCCceEEEECCEecCCCccEEEECC
Confidence 34444 34689999999766778898864 578999988764 46788887777888888888876665533222
Q ss_pred CCccccccCCCcccEEEEEEEEecCCCCeeEecccc-cCcEEeEEEEeEEEECC
Q 012788 258 WDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEM-SGGISNVQVEKIHLYDS 310 (456)
Q Consensus 258 ~~~~g~~~~~~s~ni~I~n~~~~~~~~~gi~igs~~-~~~v~nI~v~n~~~~~~ 310 (456)
.-.+.|.|.++.+ .|--+-|-. ...-..+.|+++.+.+.
T Consensus 114 -----------~gt~~I~nF~v~~---~GKl~RScGnc~~~~~~~v~~~~~~~~ 153 (197)
T d1ee6a_ 114 -----------AGTINIRNFRADD---IGKLVRQNGGTTYKVVMNVENCNISRV 153 (197)
T ss_dssp -----------SEEEEEESCEEEE---EEEEEEECTTCCSCEEEEEESCEEEEE
T ss_pred -----------CCcEEEeeEEEec---CCEEEEeCCCCCcceEEEEEeccceec
Confidence 3566777776653 122221111 11234556666666543
|
| >d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Chondroitinase B domain: Chondroitinase B species: Pedobacter heparinus [TaxId: 984]
Probab=82.74 E-value=1.9 Score=41.20 Aligned_cols=19 Identities=5% Similarity=0.004 Sum_probs=9.5
Q ss_pred ccEEEEEEEEecCCCCeeEe
Q 012788 270 TDVHIRRVLLQSSSGSSVAF 289 (456)
Q Consensus 270 ~ni~I~n~~~~~~~~~gi~i 289 (456)
.+.+|+++++... ..++.+
T Consensus 227 ~~n~I~nN~~~~~-~ggi~~ 245 (481)
T d1ofla_ 227 QENVYYGNTYLNC-QGTMNF 245 (481)
T ss_dssp BTCEEESCEEESC-SSEEEE
T ss_pred CCcEEeeeEEecC-cceEEE
Confidence 4445555555544 344444
|
| >d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate transeliminase domain: Pectate transeliminase species: Erwinia chrysanthemi [TaxId: 556]
Probab=81.03 E-value=4.4 Score=36.73 Aligned_cols=96 Identities=10% Similarity=0.205 Sum_probs=56.7
Q ss_pred eeeecCccCEEEEecEEec-CCceEecCCCCCccccccCCCcccEEEEEEEEecCCC------------CeeEecccccC
Q 012788 229 GIVPDSSDNVCIEDCIIAM-GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSG------------SSVAFGSEMSG 295 (456)
Q Consensus 229 Gi~~~~s~nV~I~n~~i~~-gDD~iai~sg~~~~g~~~~~~s~ni~I~n~~~~~~~~------------~gi~igs~~~~ 295 (456)
++....+.+.++++|.+.. .++++.+... ..++.|+|+.+..... .++.++. ..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~n~~~G~~~~~~-----------~~~~~i~nn~~~~n~~~~~~~~~~~~~~~~~~~~~--~~ 253 (400)
T d1ru4a_ 187 GPKQKQGPGNRFVGCRAWENSDDGFDLFDS-----------PQKVVIENSWAFRNGINYWNDSAFAGNGNGFKLGG--NQ 253 (400)
T ss_dssp EECTTCCSCCEEESCEEESCSSCSEECTTC-----------CSCCEEESCEEESTTCCCSCCTTCCCCCCSEECCC--TT
T ss_pred eEEecccccceeecceeeeccCcceeEEec-----------CCCEEEECeEEEcccccccccccccccCceeeccC--CC
Confidence 4444556788899999876 5677777654 6788999998875411 1112111 23
Q ss_pred cEEeEEEEeEEEECCcc-eEEEEecCCCCceEEeEEEEceEecCcceeE
Q 012788 296 GISNVQVEKIHLYDSLN-GIEFRTTKGRGGYIRQIVISDAELYNINVAF 343 (456)
Q Consensus 296 ~v~nI~v~n~~~~~~~~-gi~iks~~g~~g~v~nI~~~ni~~~~~~~~i 343 (456)
...+..+.++.+.+... |+.+... ..++++.|.++.+.....
T Consensus 254 ~~~~~~~~~n~~~~n~~~g~~~~~~------~~~~~i~nN~~~~n~~~~ 296 (400)
T d1ru4a_ 254 AVGNHRITRSVAFGNVSKGFDQNNN------AGGVTVINNTSYKNGINY 296 (400)
T ss_dssp CCCCCEEESCEEESCSSEEEECTTC------SSCCEEESCEEESSSEEE
T ss_pred cccceEEEEEEEecccccceeeccC------ccccceecceEEcccccc
Confidence 45667788888876532 3222211 135666677666544443
|