Citrus Sinensis ID: 012810

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450------
MQMANLLPGDSSHHGIYKGEPSEFSQDMPKDGGRWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDKDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEFDVTPRQLEEVSNQMLELYEQNRVQPSHGDVEGSTGSGGTHRASSKALSITEEYPAATSSYSQASATTSRPGPLKPVSVKAVSEQPLADTHCAPPRTTQSQHNDYRSVEMENALDDDAYADSNKDDLYSESETLPYQNKGKLQRVSRFGADALGEEDQGRIVAEEKQEKLGNQRTSVLSEIWNIVEVQLASHPRTLSRSLTQTS
ccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEccccHHHHHHHHHHHHHHHHcccccccccccccEEEcccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccc
ccHHccccccccccccccccccEEEEccccccccEEEcHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccHccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHHccccccccccccEEEEEcccHHHHHHHHHHHHHHHHcccccccccccHHHHcHHHcccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccHHHHcccccccccccEEEEcccccccccccccccEcHHHcccccccccHHcccccccEEEEEccccccccccccccc
mqmanllpgdsshhgiykgepsefsqdmpkdggrwyfsrkeleedspsrrdgidlkreTYLRKSYCTFLQDLgmklkvpqITIATAIIFCHRFylrqshtkndrrTVATVCMFLAgkveetprplkDVIIVSYEIihkkdkdpdsiyrIKQKEVYEQQKELILLGERVVLATLAFdlnvlhpyKPLVEAIKKFKVAQNALAQVAWNFVNDglrtslclqfkphhVAAGAIFLAAKFLkvklpsdgdrmwwqefdvtprQLEEVSNQMLELYeqnrvqpshgdvegstgsggthrasskalsiteeypaatssysqasattsrpgplkpvsvkavseqpladthcapprttqsqhndyrSVEMEnaldddayadsnkddlysesetlpyqnkgklqrvsrfgadalgeedqgrIVAEEKQEKLGNQRTSVLSEIWNIVEVQLashprtlsrsltqts
mqmanllpgdsshhGIYKGepsefsqdmpkdGGRWYFSrkeleedspsrrdgidlkretYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLrqshtkndrrTVATVCMFLagkveetprplkdVIIVSYeiihkkdkdpdsIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEFDVTPRQLEEVSNQMLELYEQNRVQPSHGdvegstgsggthrASSKALSITEEYPAAtssysqasattsrpgpLKPVSVKAVSEqpladthcapprttqsqhndyRSVEMENALDDDAYADSNKDDLysesetlpyqnkgklqrVSRFGADALGEEDQGRIVAeekqeklgnqrtSVLSEIWNIVEvqlashprtlsrsltqts
MQMANLLPGDSSHHGIYKGEPSEFSQDMPKDGGRWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDKDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEFDVTPRQLEEVSNQMLELYEQNRVQPSHGDVEGSTGSGGTHRASSKALSITEEYPaatssysqasattsRPGPLKPVSVKAVSEQPLADTHCAPPRTTQSQHNDYRSVEMENALdddayadsnkddLYSESETLPYQNKGKLQRVSRFGADALGEEDQGRIVAEEKQEKLGNQRTSVLSEIWNIVEVQLASHPRTLSRSLTQTS
******************************************************LKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDKDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEFDVTPR**************************************************************************************************************************************************************************VLSEIWNIVEVQL***************
***********************************YFSRKEL***********DLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDKDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEFDVTPRQLEEVSNQMLELYEQNR*************************************************************************************************************************************************************************************
MQMANLLPGDSSHHGIYKGEPSEFSQDMPKDGGRWYFSRKE********RDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDKDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEFDVTPRQLEEVSNQMLELYEQNRV************************SITEE*******************************QPLADTHCA*********NDYRSVEMENALDDDAYADSNKDDLYSESETLPYQNKGKLQRVSRFGADALGEEDQGRIVAEEKQEKLGNQRTSVLSEIWNIVEVQLASHP***********
*****************KGEPSEFSQDMPKDGGRWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDKDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEFDVTPRQLEEVSNQMLELYEQNRV************************************************************************************************************************************************************IWNIVEVQLAS*************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MQMANLLPGDSSHHGIYKGEPSEFSQDMPKDGGRWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDKDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEFDVTPRQLEEVSNQMLELYEQNRVQPSHGDVEGSTGSGGTHRASSKALSITEEYPAATSSYSQASATTSRPGPLKPVSVKAVSEQPLADTHCAPPRTTQSQHNDYRSVEMENALDDDAYADSNKDDLYSESETLPYQNKGKLQRVSRFGADALGEEDQGRIVAEEKQEKLGNQRTSVLSEIWNIVEVQLASHPRTLSRSLTQTS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query456 2.2.26 [Sep-21-2011]
Q2QQS5543 Cyclin-T1-4 OS=Oryza sati yes no 0.649 0.545 0.777 1e-141
Q2RAC5490 Cyclin-T1-3 OS=Oryza sati no no 0.697 0.648 0.753 1e-140
Q9FKE6 579 Cyclin-T1-5 OS=Arabidopsi yes no 0.765 0.602 0.657 1e-138
Q8GYM6541 Cyclin-T1-4 OS=Arabidopsi no no 0.697 0.587 0.717 1e-135
Q56YF8460 Cyclin-T1-2 OS=Arabidopsi no no 0.585 0.580 0.618 3e-88
Q0E474446 Cyclin-T1-1 OS=Oryza sati no no 0.519 0.531 0.558 1e-80
Q6Z7H3 630 Cyclin-T1-2 OS=Oryza sati no no 0.513 0.371 0.563 6e-80
Q9C8P7247 Putative cyclin-T1-1 OS=A no no 0.521 0.963 0.514 2e-70
Q8LBC0317 Cyclin-T1-3 OS=Arabidopsi no no 0.519 0.747 0.520 7e-68
Q9XT26 727 Cyclin-T1 OS=Equus caball yes no 0.526 0.330 0.367 1e-40
>sp|Q2QQS5|CCT14_ORYSJ Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1 Back     alignment and function desciption
 Score =  501 bits (1289), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 241/310 (77%), Positives = 267/310 (86%), Gaps = 14/310 (4%)

Query: 6   LLPGDSSHHGIYKGEPSEFSQDMPKD----GGRWYFSRKELEEDSPSRRDGIDLKRETYL 61
           ++P DSSHHGI +  P   +Q   ++    G  WYFSRKE+EE+SPSRRDGIDLK+E+YL
Sbjct: 3   MMPSDSSHHGIVENSPYRTTQGRNEETGELGASWYFSRKEIEENSPSRRDGIDLKKESYL 62

Query: 62  RKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVATVCMFLAGKVEET 121
           RKSYCTFLQDLGM+LKVPQ+TIATAI+FCHRFYLRQSH KNDRRT+ATVCMFLAGKVEET
Sbjct: 63  RKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFYLRQSHAKNDRRTIATVCMFLAGKVEET 122

Query: 122 PRPLKDVIIVSYEIIHKKDKDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLH 181
           PRPLKDVI+VSYEIIHKKD  P +  RIKQKEVY+QQKELILL ERVVLATL FDLNV H
Sbjct: 123 PRPLKDVILVSYEIIHKKD--PAAGQRIKQKEVYDQQKELILLAERVVLATLGFDLNVHH 180

Query: 182 PYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKL 241
           PYKPLVEAI+KFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHH+AAGAIFLAAKFLKVKL
Sbjct: 181 PYKPLVEAIRKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKL 240

Query: 242 PSDGDRMWWQEFDVTPRQLEEVSNQMLELYEQN---RVQPSHGD-VEGSTGSGGTHRASS 297
           PSDG+++WWQEFDVTPRQLEEVSNQMLELYEQN   + QPSHG+  EGS+ S    R S 
Sbjct: 241 PSDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNCAAQAQPSHGNEAEGSSASVPNQRVSV 300

Query: 298 KALSITEEYP 307
           K    +EE P
Sbjct: 301 K----SEETP 306

Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q2RAC5|CCT13_ORYSJ Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2 Back     alignment and function description
>sp|Q9FKE6|CCT15_ARATH Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=2 SV=2 Back     alignment and function description
>sp|Q8GYM6|CCT14_ARATH Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=1 SV=1 Back     alignment and function description
>sp|Q56YF8|CCT12_ARATH Cyclin-T1-2 OS=Arabidopsis thaliana GN=CYCT1-2 PE=2 SV=2 Back     alignment and function description
>sp|Q0E474|CCT11_ORYSJ Cyclin-T1-1 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=3 SV=2 Back     alignment and function description
>sp|Q6Z7H3|CCT12_ORYSJ Cyclin-T1-2 OS=Oryza sativa subsp. japonica GN=CYCT1_2 PE=2 SV=2 Back     alignment and function description
>sp|Q9C8P7|CCT11_ARATH Putative cyclin-T1-1 OS=Arabidopsis thaliana GN=CYCT1-1 PE=3 SV=1 Back     alignment and function description
>sp|Q8LBC0|CCT13_ARATH Cyclin-T1-3 OS=Arabidopsis thaliana GN=CYCT1-3 PE=1 SV=2 Back     alignment and function description
>sp|Q9XT26|CCNT1_HORSE Cyclin-T1 OS=Equus caballus GN=CCNT1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query456
359494525 623 PREDICTED: cyclin-T1-5-like isoform 1 [V 0.907 0.664 0.699 1e-170
296082684539 unnamed protein product [Vitis vinifera] 0.826 0.699 0.690 1e-162
224081439 612 predicted protein [Populus trichocarpa] 0.934 0.696 0.633 1e-155
356525766 611 PREDICTED: cyclin-T1-5-like isoform 1 [G 0.883 0.659 0.658 1e-151
356556989 606 PREDICTED: cyclin-T1-5-like [Glycine max 0.870 0.655 0.665 1e-149
224072367348 predicted protein [Populus trichocarpa] 0.752 0.985 0.714 1e-148
449464654 571 PREDICTED: cyclin-T1-5-like [Cucumis sat 0.883 0.705 0.647 1e-148
449502523 571 PREDICTED: LOW QUALITY PROTEIN: cyclin-T 0.883 0.705 0.647 1e-148
356576769 568 PREDICTED: cyclin-T1-5-like [Glycine max 0.866 0.695 0.648 1e-146
356521602 567 PREDICTED: cyclin-T1-5-like [Glycine max 0.866 0.696 0.644 1e-145
>gi|359494525|ref|XP_002268838.2| PREDICTED: cyclin-T1-5-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 295/422 (69%), Positives = 336/422 (79%), Gaps = 8/422 (1%)

Query: 3   MANLLPGDSSHHGIYKGEPSEFSQDMPKDGGRWYFSRKELEEDSPSRRDGIDLKRETYLR 62
           MA LLPGD SHHG+Y+G   +F QD P++GGRWY SRKE+EE+SPS+RDGIDLK+ETYLR
Sbjct: 1   MAGLLPGDPSHHGMYEGGSYKFPQDKPEEGGRWYLSRKEIEENSPSKRDGIDLKKETYLR 60

Query: 63  KSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVATVCMFLAGKVEETP 122
           KSYCTFLQDLGM+LKVPQ+TIATAIIFCHRF+LRQSH KNDRRT+ATVCMFLAGKVEETP
Sbjct: 61  KSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRTIATVCMFLAGKVEETP 120

Query: 123 RPLKDVIIVSYEIIHKKDKDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLHP 182
           RPLKDVI+VSYEII+KKD  P ++ RIKQKEVYEQQKELILLGERVVLATL FDLNV HP
Sbjct: 121 RPLKDVILVSYEIINKKD--PAAVQRIKQKEVYEQQKELILLGERVVLATLGFDLNVHHP 178

Query: 183 YKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLP 242
           YKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHH+AAGAIFLAAKFLKVKLP
Sbjct: 179 YKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLP 238

Query: 243 SDGDRMWWQEFDVTPRQLEEVSNQMLELYEQNRVQPSHG-DVEGSTGSGGTHRASSKALS 301
           SDG+++WWQEFDVTPRQLEEVSNQMLELYEQNRV PS G +VEGS G G  HRA+SKA +
Sbjct: 239 SDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNRVPPSQGSEVEGSVGGGAAHRATSKAPA 298

Query: 302 ITEEYPAATSSYSQASATTSRPGPLKPVSVKAVSEQPLADTHCAPPRTTQSQHNDYRSVE 361
             EEY     S +    T  +P   KPV+ K  S+QP  D    P RT+Q++ NDY S E
Sbjct: 299 ANEEY---VMSNAHGGGTPLKPATSKPVASKPASDQPYVDNISGPSRTSQNRSNDYGSTE 355

Query: 362 MENALDDDAYADSNKDDLYSESETLPYQNKGKLQRVSRFGADALGEEDQGRIVAEEKQEK 421
           M +A   D  AD    D +    +L  +N G+ Q  SR G++  GE+DQ R     +  +
Sbjct: 356 MRSA--SDHKADGESSDYHEHEPSLYQENLGEGQNASRHGSEGPGEDDQERTGGRSEARE 413

Query: 422 LG 423
            G
Sbjct: 414 AG 415

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296082684|emb|CBI21689.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224081439|ref|XP_002306411.1| predicted protein [Populus trichocarpa] gi|222855860|gb|EEE93407.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356525766|ref|XP_003531494.1| PREDICTED: cyclin-T1-5-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356556989|ref|XP_003546801.1| PREDICTED: cyclin-T1-5-like [Glycine max] Back     alignment and taxonomy information
>gi|224072367|ref|XP_002303702.1| predicted protein [Populus trichocarpa] gi|222841134|gb|EEE78681.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449464654|ref|XP_004150044.1| PREDICTED: cyclin-T1-5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449502523|ref|XP_004161665.1| PREDICTED: LOW QUALITY PROTEIN: cyclin-T1-5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356576769|ref|XP_003556502.1| PREDICTED: cyclin-T1-5-like [Glycine max] Back     alignment and taxonomy information
>gi|356521602|ref|XP_003529443.1| PREDICTED: cyclin-T1-5-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query456
TAIR|locus:2122975541 CYCT1;4 [Arabidopsis thaliana 0.662 0.558 0.745 4.1e-120
TAIR|locus:2153358 590 AT5G45190 [Arabidopsis thalian 0.754 0.583 0.636 2.7e-116
TAIR|locus:2122940460 CYCT1;2 [Arabidopsis thaliana 0.581 0.576 0.623 1.2e-83
TAIR|locus:2008698247 CYCT1;1 "cyclin T1;1" [Arabido 0.521 0.963 0.514 4.7e-64
TAIR|locus:2196919317 CYCT1;3 "cyclin T 1;3" [Arabid 0.519 0.747 0.524 1.4e-62
DICTYBASE|DDB_G0286617405 cycK "putative K-type cyclin" 0.594 0.669 0.423 4.9e-53
ZFIN|ZDB-GENE-030131-6397 683 ccnt1 "cyclin T1" [Danio rerio 0.519 0.346 0.358 1.3e-38
UNIPROTKB|F6V6A9 652 CCNT1 "Uncharacterized protein 0.517 0.361 0.382 1.6e-38
UNIPROTKB|E2QRW8 725 CCNT1 "Uncharacterized protein 0.517 0.325 0.382 2.9e-38
UNIPROTKB|Q9XT26 727 CCNT1 "Cyclin-T1" [Equus cabal 0.517 0.324 0.378 6.4e-38
TAIR|locus:2122975 CYCT1;4 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1182 (421.1 bits), Expect = 4.1e-120, P = 4.1e-120
 Identities = 228/306 (74%), Positives = 256/306 (83%)

Query:     3 MANLLPGDSSHHGIYKGEPSEFSQDMPKDGGRWYFSRKELEEDSPSRRDGIDLKRETYLR 62
             MA +L GD S         S  S +   +  RWYF RKE+EE+SPSR D IDLK+ETYLR
Sbjct:     1 MAGVLAGDCSFGESGVSSYSRNSNEKQDEVARWYFGRKEIEENSPSRLDSIDLKKETYLR 60

Query:    63 KSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVATVCMFLAGKVEETP 122
             KSYCTFLQDLGM+LKVPQ+TIATAIIFCHRF++RQSH +NDRRT+ATVCMFLAGKVEETP
Sbjct:    61 KSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHARNDRRTIATVCMFLAGKVEETP 120

Query:   123 RPLKDVIIVSYEIIHKKDKDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLHP 182
             RPLKDVI+VSYEIIHKKD  P +  +IKQKEVYEQQKELIL GE++VL+TL FD NV HP
Sbjct:   121 RPLKDVIVVSYEIIHKKD--PTTAQKIKQKEVYEQQKELILNGEKIVLSTLGFDFNVYHP 178

Query:   183 YKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLP 242
             YKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHH+AAGAIFLAAKFLKVKLP
Sbjct:   179 YKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLP 238

Query:   243 SDGDRMWWQEFDVTPRQLEEVSNQMLELYEQNRVQPSH-GDVEGSTGSGGTHRASSK-AL 300
             SDG+++WWQEFDVTPRQLE+VSNQMLELYEQNRV  S   +VE S G G  H   S+ + 
Sbjct:   239 SDGEKVWWQEFDVTPRQLEDVSNQMLELYEQNRVPASQVSEVESSVGGGSAHHVGSRPSA 298

Query:   301 SITEEY 306
              +T E+
Sbjct:   299 RLTHEH 304
GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA
GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0019901 "protein kinase binding" evidence=IEA
GO:0051726 "regulation of cell cycle" evidence=ISS
GO:0009615 "response to virus" evidence=IEP
GO:0010090 "trichome morphogenesis" evidence=IMP
GO:0048366 "leaf development" evidence=IGI
GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA
GO:0006366 "transcription from RNA polymerase II promoter" evidence=RCA
GO:0008284 "positive regulation of cell proliferation" evidence=RCA
TAIR|locus:2153358 AT5G45190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122940 CYCT1;2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008698 CYCT1;1 "cyclin T1;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196919 CYCT1;3 "cyclin T 1;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0286617 cycK "putative K-type cyclin" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-6397 ccnt1 "cyclin T1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F6V6A9 CCNT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2QRW8 CCNT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9XT26 CCNT1 "Cyclin-T1" [Equus caballus (taxid:9796)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2QQS5CCT14_ORYSJNo assigned EC number0.77740.64910.5451yesno
Q9FKE6CCT15_ARATHNo assigned EC number0.65760.76530.6027yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00035737001
SubName- Full=Chromosome undetermined scaffold_80, whole genome shotgun sequence; (523 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query456
COG5333297 COG5333, CCL1, Cdk activating kinase (CAK)/RNA pol 3e-39
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 4e-19
cd0004388 cd00043, CYCLIN, Cyclin box fold 1e-14
TIGR00569305 TIGR00569, ccl1, cyclin ccl1 1e-11
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 3e-10
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 6e-08
cd0004388 cd00043, CYCLIN, Cyclin box fold 3e-07
>gnl|CDD|227640 COG5333, CCL1, Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  142 bits (361), Expect = 3e-39
 Identities = 74/213 (34%), Positives = 107/213 (50%), Gaps = 16/213 (7%)

Query: 36  YFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYL 95
             S+  +E D       + L++E  L   Y   + DL  +L +PQ  +ATAI+F  RFYL
Sbjct: 19  DSSQNAIELDLLVLEPELTLEKELNLVIYYLKLIMDLCTRLNLPQTVLATAILFFSRFYL 78

Query: 96  RQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDKDPDSIYRIKQKEVY 155
           + S  +    +V T C++LA KVE+TPR   D+ I S+E             R    E  
Sbjct: 79  KNSVEEISLYSVVTTCVYLACKVEDTPR---DISIESFEA------------RDLWSEEP 123

Query: 156 EQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIKKFKVAQNA-LAQVAWNFVNDGLRT 214
           +  +E IL  E  +L  L FDL+V HPYK L   +K  +      L Q+AW  +ND LRT
Sbjct: 124 KSSRERILEYEFELLEALDFDLHVHHPYKYLEGFLKDLQEKDKYKLLQIAWKIINDALRT 183

Query: 215 SLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDR 247
            LCL + PH +A  A+ +A + L + +    D 
Sbjct: 184 DLCLLYPPHIIALAALLIACEVLGMPIIKLLDF 216

Length = 297
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|129660 TIGR00569, ccl1, cyclin ccl1 Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 456
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 100.0
KOG0835367 consensus Cyclin L [General function prediction on 100.0
KOG0794264 consensus CDK8 kinase-activating protein cyclin C 100.0
TIGR00569305 ccl1 cyclin ccl1. University). 100.0
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.97
KOG2496325 consensus Cdk activating kinase (CAK)/RNA polymera 99.89
KOG0656335 consensus G1/S-specific cyclin D [Cell cycle contr 99.86
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.84
KOG0653391 consensus Cyclin B and related kinase-activating p 99.82
COG5024440 Cyclin [Cell division and chromosome partitioning] 99.75
KOG0655408 consensus G1/S-specific cyclin E [Cell cycle contr 99.73
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.67
KOG0654359 consensus G2/Mitotic-specific cyclin A [Cell cycle 99.59
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 99.53
KOG1597308 consensus Transcription initiation factor TFIIB [T 99.51
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.3
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.17
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 98.92
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 98.49
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 98.37
KOG1598521 consensus Transcription initiation factor TFIIIB, 98.36
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 98.35
KOG4164497 consensus Cyclin ik3-1/CABLES [Cell cycle control, 97.68
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 97.58
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 97.51
PRK00423310 tfb transcription initiation factor IIB; Reviewed 97.39
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 95.53
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 95.08
KOG1597308 consensus Transcription initiation factor TFIIB [T 94.25
TIGR00569305 ccl1 cyclin ccl1. University). 89.62
PF01857135 RB_B: Retinoblastoma-associated protein B domain; 88.96
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 87.38
KOG1674218 consensus Cyclin [General function prediction only 86.78
KOG0835367 consensus Cyclin L [General function prediction on 84.05
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 83.12
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=5.8e-53  Score=423.54  Aligned_cols=243  Identities=55%  Similarity=0.916  Sum_probs=228.7

Q ss_pred             CCCCCccccHHHHhhhCCCccCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCCcchHHHHH
Q 012810           30 KDGGRWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVAT  109 (456)
Q Consensus        30 ~~~~~W~Ft~eel~~~sPSr~dGis~e~E~~lR~~~~~~I~~l~~~LkLp~~TiatAi~yf~RFy~~~s~~~~d~~lVaa  109 (456)
                      ....+|||+++|+++.+|||++|++.+.|...|..++.||+++|.+|++|+.|++||++||||||+.++++.++++.||+
T Consensus         7 ~~~~~w~~s~e~~~~~tpSr~~g~~~~~E~~~r~~~~~fI~elg~~L~~~~~ti~tA~~~~hRFy~~~s~~~~~~~~vA~   86 (323)
T KOG0834|consen    7 GETSRWYFSKEQLEENTPSRRDGIDLKKELRLRQEGAKFIQELGVRLKMPQKTIATAIVIFHRFYMFHSFKKFDPYTVAA   86 (323)
T ss_pred             ccccccccCHHHHccCChhhccCCchhHHHHHHHHHHHHHHHHHHHcCCCccchhhhhhhhhhhhhhcccccCcHHHHHH
Confidence            34478999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcccCCCCCchhHHHHHHHHhhcCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCccccCCcHHHHHHH
Q 012810          110 VCMFLAGKVEETPRPLKDVIIVSYEIIHKKDKDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEA  189 (456)
Q Consensus       110 ACLfLA~KvEE~~rkL~dvi~v~~~i~~k~~~dP~~~~~i~~~e~y~~~ke~Il~~E~~IL~~L~FdL~V~~P~~~L~~~  189 (456)
                      +|||||||+||++++++|||.+++.++++++        +...+.|+++|+.|+.+|.+||++|+|||+|.|||.||.+|
T Consensus        87 sclfLAgKvEetp~kl~dIi~~s~~~~~~~~--------~~~~~~~~~~~~~Iv~~E~~lL~tl~Fdl~v~hPy~~ll~~  158 (323)
T KOG0834|consen   87 SCLFLAGKVEETPRKLEDIIKVSYRYLNPKD--------LELEEVYWELKERIVQLELLLLETLGFDLNVEHPYKYLLKY  158 (323)
T ss_pred             HHHHHHhhcccCcccHHHHHHHHHHHcCccc--------ccHHHHHHHHHHHHHHHHHHHHHHccCceeccCchHHHHHH
Confidence            9999999999999999999999999887652        34578899999999999999999999999999999999999


Q ss_pred             HHHhhhchH---HHHHHHHHHhhhhcccccccCcCHHHHHHHHHHHHHHHcCCCCCCCCcccchhccC--CCHHHHHHHH
Q 012810          190 IKKFKVAQN---ALAQVAWNFVNDGLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGDRMWWQEFD--VTPRQLEEVS  264 (456)
Q Consensus       190 l~~l~~~~~---~I~q~A~~~lnDsl~t~l~L~y~Ps~IAaAaIyLA~~~l~v~lp~~~~~~W~~~f~--vt~eeL~ei~  264 (456)
                      +++++.+.+   .+++.||.|+||++++.+||+|+|++||+|||++|+++.++.+|...+..||..|+  ++.+.|++++
T Consensus       159 ~k~l~~~~~~~~~~a~~Aw~~~nD~~~t~~cL~y~p~~IAva~i~lA~~~~~~~~~~~~~~~w~~~~d~~vt~e~l~~i~  238 (323)
T KOG0834|consen  159 LKKLKADENLKQPLAQAAWNFVNDSLRTTLCLQYSPHSIAVACIHLAAKLLGVELPSDTDKRWWREFDETVTNELLDDIC  238 (323)
T ss_pred             HHHhhhhhhccccHHHHHHHHhchhheeeeeEeecCcEEEeehhhHHHHHcCCCCCCCcccchhhhhcccCCHHHHHHHH
Confidence            999988765   58999999999999999999999999999999999999999999877778999998  9999999999


Q ss_pred             HHHHHHHhhCCCCCCC
Q 012810          265 NQMLELYEQNRVQPSH  280 (456)
Q Consensus       265 ~~Il~lY~~~~~~~s~  280 (456)
                      ++++++|+..+.....
T Consensus       239 ~~~l~~y~~~~~~~~~  254 (323)
T KOG0834|consen  239 HEFLDLYEQTPQRNHL  254 (323)
T ss_pred             HHHHHHHhhccccccc
Confidence            9999999987766443

>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>PF01857 RB_B: Retinoblastoma-associated protein B domain; InterPro: IPR002719 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1674 consensus Cyclin [General function prediction only] Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query456
2w2h_A264 Structural Basis Of Transcription Activation By The 1e-40
3tnh_B259 Cdk9CYCLIN T IN COMPLEX WITH CAN508 Length = 259 9e-40
2pk2_A358 Cyclin Box Structure Of The P-Tefb Subunit Cyclin T 1e-39
3mi9_B266 Crystal Structure Of Hiv-1 Tat Complexed With Human 1e-39
3blh_B260 Crystal Structure Of Human Cdk9CYCLINT1 Length = 26 5e-39
2i53_A258 Crystal Structure Of Cyclin K Length = 258 1e-38
2ivx_A257 Crystal Structure Of Human Cyclin T2 At 1.8 A Resol 1e-37
3rgf_B285 Crystal Structure Of Human Cdk8CYCC Length = 285 2e-17
1zp2_A235 Structure Of The Mediator Subunit Cyclin C Length = 5e-11
1kxu_A333 Cyclin H, A Positive Regulatory Subunit Of Cdk Acti 1e-06
1jkw_A323 Structure Of Cyclin Mcs2 Length = 323 1e-06
>pdb|2W2H|A Chain A, Structural Basis Of Transcription Activation By The Cyclin T1-Tat-Tar Rna Complex From Eiav Length = 264 Back     alignment and structure 
Iteration: 1

 Score =  163 bits (413), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 93/253 (36%), Positives = 155/253 (61%), Gaps = 13/253 (5%)
Query: 31  DGGRWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFC 90
           +  RWYF+R++LE +SPSRR G+D  +E   R+     LQD+G +L V Q+TI TAI++ 
Sbjct: 5   NNKRWYFTREQLE-NSPSRRFGLDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYM 63
Query: 91  HRFYLRQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDKDPDSIYRIK 150
           HRFY+ QS T+  R +VA   +FLA KVEE P+ L+ VI V++  +H ++  PD+     
Sbjct: 64  HRFYMIQSFTRFHRNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESLPDT----- 118
Query: 151 QKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIKKFKVAQNALAQVAWNFVND 210
           + E Y QQ + +++ E ++L TL F+L + HP+  +V+  +  + +++ LAQ ++    +
Sbjct: 119 RSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKD-LAQTSYFMATN 177
Query: 211 GLR-TSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGD-RMWWQEFD--VTPRQLEEVSNQ 266
            L  T+  LQ+ P  VA   I LA K+   ++P   D + WW+  D  VT   L+E++++
Sbjct: 178 SLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHE 237
Query: 267 MLELYEQ--NRVQ 277
            L++ E+  NR++
Sbjct: 238 FLQILEKTPNRLK 250
>pdb|3TNH|B Chain B, Cdk9CYCLIN T IN COMPLEX WITH CAN508 Length = 259 Back     alignment and structure
>pdb|2PK2|A Chain A, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1 Derived From A Fusion Complex With Eiav Tat Length = 358 Back     alignment and structure
>pdb|3MI9|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb Length = 266 Back     alignment and structure
>pdb|3BLH|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1 Length = 260 Back     alignment and structure
>pdb|2I53|A Chain A, Crystal Structure Of Cyclin K Length = 258 Back     alignment and structure
>pdb|2IVX|A Chain A, Crystal Structure Of Human Cyclin T2 At 1.8 A Resolution (Casp Target) Length = 257 Back     alignment and structure
>pdb|3RGF|B Chain B, Crystal Structure Of Human Cdk8CYCC Length = 285 Back     alignment and structure
>pdb|1ZP2|A Chain A, Structure Of The Mediator Subunit Cyclin C Length = 235 Back     alignment and structure
>pdb|1KXU|A Chain A, Cyclin H, A Positive Regulatory Subunit Of Cdk Activating Kinase Length = 333 Back     alignment and structure
>pdb|1JKW|A Chain A, Structure Of Cyclin Mcs2 Length = 323 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query456
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 2e-89
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 5e-82
2ivx_A257 Cyclin-T2; transcription regulation, cell division 2e-79
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 8e-79
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 3e-70
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 4e-67
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 2e-12
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 8e-12
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 6e-11
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 2e-10
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 1e-09
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 3e-09
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 2e-08
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 1e-05
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1ais_B200 TFB TFIIB, protein (transcription initiation facto 2e-04
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
 Score =  271 bits (695), Expect = 2e-89
 Identities = 89/256 (34%), Positives = 145/256 (56%), Gaps = 20/256 (7%)

Query: 34  RWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRF 93
            WY+ +K+L   +PS+ +G+D   E   R+    F+ D+G +L +   T+AT II+ HRF
Sbjct: 14  CWYWDKKDLAH-TPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRF 72

Query: 94  YLRQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDKDPDSIYRIKQKE 153
           Y+  S  +  R      C+FLAGKVEETP+  KD+I  +  +++           ++  +
Sbjct: 73  YMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLN----------DVQFGQ 122

Query: 154 VYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIKKFKVAQNA---LAQVAWNFVND 210
             +  KE +++ ER++L T+ FDL V HPY+ L++  K+ K  +N    L Q+AW FVND
Sbjct: 123 FGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVND 182

Query: 211 GLRTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSDGD----RMWWQEF--DVTPRQLEEVS 264
            L T+L LQ++P  +A   ++LA +  K ++         R WW++F  DV    LE++ 
Sbjct: 183 SLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDIC 242

Query: 265 NQMLELYEQNRVQPSH 280
           +Q+L+LY Q + Q  H
Sbjct: 243 HQILDLYSQGKQQMPH 258
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Length = 257 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 285 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Length = 345 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Length = 200 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query456
2ivx_A257 Cyclin-T2; transcription regulation, cell division 100.0
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 100.0
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 100.0
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 100.0
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 100.0
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 100.0
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 100.0
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 100.0
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 100.0
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 100.0
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 99.98
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.98
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 99.97
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 99.96
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 99.96
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.95
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.91
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 99.77
1ais_B200 TFB TFIIB, protein (transcription initiation facto 97.65
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 97.32
1c9b_A207 General transcription factor IIB; protein-DNA comp 97.1
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 94.94
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 94.88
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 94.42
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 93.71
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 93.41
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 93.13
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 92.74
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 92.51
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 92.29
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 92.18
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 92.1
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 91.45
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 90.68
2ivx_A257 Cyclin-T2; transcription regulation, cell division 90.56
3h4c_A260 Transcription factor TFIIB-like; cyclin, transcrip 90.48
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 89.32
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 89.02
3m03_A95 ORC6, origin recognition complex subunit 6; helix 82.87
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
Probab=100.00  E-value=7.2e-47  Score=368.97  Aligned_cols=237  Identities=33%  Similarity=0.643  Sum_probs=215.2

Q ss_pred             CCCccccHHHHhhhCCCccCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCCcchHHHHHHH
Q 012810           32 GGRWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVATVC  111 (456)
Q Consensus        32 ~~~W~Ft~eel~~~sPSr~dGis~e~E~~lR~~~~~~I~~l~~~LkLp~~TiatAi~yf~RFy~~~s~~~~d~~lVaaAC  111 (456)
                      .++||||++|| +++||+.+|++++.|..+|..+++||.++|.+|+||+.|+++|++||||||.++++.++++++||+||
T Consensus         2 ~~~w~~t~e~l-~~~ps~~~g~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~ac   80 (257)
T 2ivx_A            2 SSRWFFTREQL-ENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTA   80 (257)
T ss_dssp             CGGGSCCHHHH-HSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHH
T ss_pred             CCCeeecHHHH-HhChHhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHH
Confidence            36799999999 58999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccCCCCCchhHHHHHHHHhhcCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCccccCCcHHHHHHHHH
Q 012810          112 MFLAGKVEETPRPLKDVIIVSYEIIHKKDKDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNVLHPYKPLVEAIK  191 (456)
Q Consensus       112 LfLA~KvEE~~rkL~dvi~v~~~i~~k~~~dP~~~~~i~~~e~y~~~ke~Il~~E~~IL~~L~FdL~V~~P~~~L~~~l~  191 (456)
                      ||||||+||.++++++++.+++.+.++.  .|..   ...++.|...+++|+.||+.||++|+|+|.++||+.||.+|++
T Consensus        81 L~lA~K~EE~p~~l~d~~~~~~~~~~~~--~~~~---~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~  155 (257)
T 2ivx_A           81 LFLAAKVEEQARKLEHVIKVAHACLHPL--EPLL---DTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQ  155 (257)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHHHHHCTT--SCCC---CTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHH
T ss_pred             HHHHhccccCCcCHHHHHHHHHHHhccC--CCCC---CcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHH
Confidence            9999999999999999999988877654  2211   0124568878999999999999999999999999999999999


Q ss_pred             HhhhchHHHHHHHHHHhhhhc-ccccccCcCHHHHHHHHHHHHHHHcCCCCCCC-Ccccchhcc--CCCHHHHHHHHHHH
Q 012810          192 KFKVAQNALAQVAWNFVNDGL-RTSLCLQFKPHHVAAGAIFLAAKFLKVKLPSD-GDRMWWQEF--DVTPRQLEEVSNQM  267 (456)
Q Consensus       192 ~l~~~~~~I~q~A~~~lnDsl-~t~l~L~y~Ps~IAaAaIyLA~~~l~v~lp~~-~~~~W~~~f--~vt~eeL~ei~~~I  267 (456)
                      .++.+. .+.+.||+++++++ .+++|+.|+|+.||+||||+|+..+|.++|.. ++..||..|  ++++++|.+|+++|
T Consensus       156 ~l~~~~-~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~~~~i  234 (257)
T 2ivx_A          156 LVRASK-DLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEF  234 (257)
T ss_dssp             HTTCCH-HHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHH
T ss_pred             HhCCCc-HHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHHHHHH
Confidence            998764 78899999999998 48899999999999999999999999988864 346899988  79999999999999


Q ss_pred             HHHHhhCC
Q 012810          268 LELYEQNR  275 (456)
Q Consensus       268 l~lY~~~~  275 (456)
                      +++|+..+
T Consensus       235 ~~~~~~~~  242 (257)
T 2ivx_A          235 LQILEKTP  242 (257)
T ss_dssp             HHHHHTSH
T ss_pred             HHHHHhCh
Confidence            99998653
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei} Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 456
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 1e-47
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 5e-46
d2i53a2110 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens 8e-36
d2ivxa2113 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapien 5e-33
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 6e-31
d1jkwa2126 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo 1e-22
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 6e-09
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 1e-07
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 2e-07
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 1e-06
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 3e-05
d1aisb198 a.74.1.2 (B:1108-1205) Transcription factor IIB (T 4e-04
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin-T2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  158 bits (400), Expect = 1e-47
 Identities = 52/146 (35%), Positives = 92/146 (63%), Gaps = 6/146 (4%)

Query: 34  RWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRF 93
           RW+F+R++LE ++PSRR G++  +E   R+     +Q++G +L V Q+TI TAI++ HRF
Sbjct: 4   RWFFTREQLE-NTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRF 62

Query: 94  YLRQSHTKNDRRTVATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDKDPDSIYRIKQKE 153
           Y+  S TK ++  +++  +FLA KVEE  R L+ VI V++  +H  +   D+     + +
Sbjct: 63  YMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPLLDT-----KCD 117

Query: 154 VYEQQKELILLGERVVLATLAFDLNV 179
            Y QQ   +++ E ++L TL F++ +
Sbjct: 118 AYLQQTRELVILETIMLQTLGFEITI 143
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 110 Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 113 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 98 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query456
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.97
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.92
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.83
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.83
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.68
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.66
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 99.66
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 99.65
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.64
d1jkwa2126 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.32
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 98.84
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 98.73
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 98.61
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 98.41
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 98.24
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 98.2
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 98.14
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 97.88
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.82
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 95.95
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 94.2
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 93.94
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 93.58
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 92.84
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 92.53
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 92.28
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 91.53
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 91.05
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 90.72
d1w98b1130 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 80.43
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin-T2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-33  Score=245.65  Aligned_cols=141  Identities=37%  Similarity=0.688  Sum_probs=128.8

Q ss_pred             CCccccHHHHhhhCCCccCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCCcchHHHHHHHH
Q 012810           33 GRWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRRTVATVCM  112 (456)
Q Consensus        33 ~~W~Ft~eel~~~sPSr~dGis~e~E~~lR~~~~~~I~~l~~~LkLp~~TiatAi~yf~RFy~~~s~~~~d~~lVaaACL  112 (456)
                      ++||||+++|+ .+||+++||+.++|..+|..+|+||+++|.+|++|+.|+++|++||||||+++++.++++++|++|||
T Consensus         3 ~~w~~t~~~l~-~~pS~~~gi~~~~E~~~R~~~~~~i~~~~~~l~l~~~t~~~A~~l~~Rf~~~~s~~~~~~~~va~acl   81 (143)
T d2ivxa1           3 SRWFFTREQLE-NTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTAL   81 (143)
T ss_dssp             GGGSCCHHHHH-SCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHH
T ss_pred             CCCCCCHHHHH-hCcccccCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCccccCHHHHHHHHH
Confidence            68999999995 69999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcccCCCCCchhHHHHHHHHhhcCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 012810          113 FLAGKVEETPRPLKDVIIVSYEIIHKKDKDPDSIYRIKQKEVYEQQKELILLGERVVLATLAFDLNV  179 (456)
Q Consensus       113 fLA~KvEE~~rkL~dvi~v~~~i~~k~~~dP~~~~~i~~~e~y~~~ke~Il~~E~~IL~~L~FdL~V  179 (456)
                      |||||+||+++++++++.+++.+.++..  +..   ....+.|+.++++|+.||+.||++|||||+|
T Consensus        82 ~LA~K~eE~~~~~~~ii~~~~~~~~~~~--~~~---~~~~~~~~~~~~~i~~~E~~iL~~L~Fdl~V  143 (143)
T d2ivxa1          82 FLAAKVEEQARKLEHVIKVAHACLHPLE--PLL---DTKCDAYLQQTRELVILETIMLQTLGFEITI  143 (143)
T ss_dssp             HHHHHHTTCCCCHHHHHHHHHHHHCTTS--CCC---CTTSHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred             HHHHHhccccccHHHHHHHHHHHhcccc--hhh---hhchhhhHHHHHHHHHHHHHHHHHcCCeeeC
Confidence            9999999999999999999988776542  211   1234678889999999999999999999986
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure