Citrus Sinensis ID: 012814

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450------
Protein Sequence
MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTMLFNVKKVPASRSAYKEPEASIAGWPKTSFFFGNLFERFLA
Secondary Structure (PSIPRED)
ccccccccccHHHHHHcccccccEEEEEccccccEEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEcccccccccHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHccccccccccHHHHHHHHccccccccccccccccccccccccEEEEEccccccEEEEEEEEcccccHHHHHHHHHHccccEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHccccccEEEEEEEcccccHHHHHHHHHHHccEEEEEEEEEEEccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHccccEEEEEcccccccEEEEEcccccccHHHHHHHHHHHccEEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHccccccccccccccccEcccccccccEEEEEEccccccHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHccccccccHHHHccccccccccHHHHHHHHHHcccccccccccccccHHcccccccEEEEEccccccEEEEEEEccccccHHHHHHHHHHHccEEEEEEEEEcccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEccccccccHHHHHHHHHHHcccEEEEcccccccccccccccccccccccccEHHHHHHHHHcc
Coil and Loop (DISEMBL)
manaywpyfdpeyeslslrinpprasvdnsscpectvvkvdsvnkpgILLEVVQVLSDLDLIITKayissdggwfmDVFHVIDQqgkkitdgkTIDYIEkalgpkghitagaktwpskqvgvhsvgdhtaieligrdrpgLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVnddttcravgdQTRLSLMEEQLKNILrgcddedsekVARTSFSMGFTHVDRRLHQMFfadrdyegggvttadqvdhtpsfkpeitverledkgysvvnvkCRDRAKLMFDIVCTLTDMQYVVFHAAissdgphasQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVrdasgnpvdmKTIEALRKEIGHTMLFnvkkvpasrsaykepeasiagwpktsffFGNLFERFLA
Flexible Loop (DISEMBL)
MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIlrgcddedseKVARTSfsmgfthvDRRLHQMFFADRDYEGGGvttadqvdhtpsfkpeitverledkgysvvnvkcrdRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRrrvseglslelcakdrVGLLSEVTrilrenglsvtragvstvgeqAVNVfyvrdasgnpvDMKTIEALRKEIGHTMLFNVKKVPASRSAYKepeasiagwpkTSFFFGNLFERFLA
Low Complexity Region (SEG)
MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTMLFNVKKVPASRSAYKEPEASIAGWPKTSFFFGNLFERFLA
Disordered region (IsUnstruct)
***AYWPYFDPEYESLSLRI**********SCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGC********ARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTMLFNVKKVPA*********ASIAGWPKTSFFFGNLFERF**
Disordered Region (DISOPRED)
**NAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTID**************************HSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTAD*V**TP*FKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGC**********VIKCLEAAIRRRVSEGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGH********************************FGNLFERFL*
Disordered Region (DISEMBL)
MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTMLFNVKKVP**********ASIAGWPKTSFFFGNLFERFLA
Disordered Region (DISPRO)
**NAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK*********WPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGC*************S*GFTHVDRRLHQMFFADRDYEG***********TPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTMLFNVKK********************TSFFFGNLFERFLA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTMLFNVKKVPASRSAYKEPEASIAGWPKTSFFFGNLFERFLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	456	2.2.26 [Sep-21-2011]
Q98C27	933	[Protein-PII] uridylyltra	yes	no	0.160	0.078	0.370	3e-08
Q5FPT6	949	[Protein-PII] uridylyltra	yes	no	0.203	0.097	0.350	7e-08
Q53245	948	[Protein-PII] uridylyltra	N/A	no	0.175	0.084	0.382	1e-07
Q9RAE4	944	[Protein-PII] uridylyltra	N/A	no	0.149	0.072	0.405	1e-07
Q8RQD1	933	[Protein-PII] uridylyltra	yes	no	0.133	0.065	0.358	2e-07
A5VN81	934	[Protein-PII] uridylyltra	yes	no	0.199	0.097	0.326	3e-07
Q8G312	934	[Protein-PII] uridylyltra	yes	no	0.199	0.097	0.326	3e-07
Q8YES3	934	[Protein-PII] uridylyltra	yes	no	0.199	0.097	0.326	4e-07
C0RGK0	934	[Protein-PII] uridylyltra	yes	no	0.199	0.097	0.326	4e-07
Q57FN0	934	[Protein-PII] uridylyltra	yes	no	0.199	0.097	0.326	4e-07

>sp|Q98C27|GLND_RHILO [Protein-PII] uridylyltransferase OS=Rhizobium loti (strain MAFF303099) GN=glnD PE=3 SV=1

 Score = 60.1 bits (144), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 47/81 (58%)

Query: 22  PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
           PPRA + N+     +V++V+ +++PG+L E+   LSDL L I  A+I++ G   +D F+V
Sbjct: 833 PPRAEIRNTLSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYV 892

Query: 82  IDQQGKKITDGKTIDYIEKAL 102
            D  G+KI     I  I   L
Sbjct: 893 TDLTGQKIDSPARIATIRNRL 913

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.
Rhizobium loti (strain MAFF303099) (taxid: 266835)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 5EC: 9

>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain 621H) GN=glnD PE=3 SV=1

 Score = 58.9 bits (141), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 4/97 (4%)

Query: 10  DPEYESLSLRIN----PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITK 65
           D  + S S R+     PPR  +DN++    TV++V+  ++PG+L +V   LS   L I+ 
Sbjct: 839 DASHHSTSRRMRAIHVPPRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISS 898

Query: 66  AYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKAL 102
           A+I++ G   +DVF+V D  G KITD   +  + + L
Sbjct: 899 AHITTYGMRAVDVFYVRDLLGMKITDPVRLARLRETL 935

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Gluconobacter oxydans (strain 621H) (taxid: 290633)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q53245|GLND_RHITR [Protein-PII] uridylyltransferase OS=Rhizobium tropici GN=glnD PE=3 SV=2

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 48/81 (59%)

Query: 22  PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
           PP   + NS   + TV++V+ +++PG+L E+  VLSDL L I  A I++ G   +D F+V
Sbjct: 825 PPSVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYV 884

Query: 82  IDQQGKKITDGKTIDYIEKAL 102
            D  G+KI++     YI   L
Sbjct: 885 ADLVGQKISNENRRAYITARL 905

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhizobium tropici (taxid: 398)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q9RAE4|GLND_RHILV [Protein-PII] uridylyltransferase OS=Rhizobium leguminosarum bv. viciae GN=glnD PE=3 SV=2

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 45/69 (65%)

Query: 22  PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
           PP  ++ NS   + TV++V+ +++PG+L E+  VLSDL L I  A I++ G   +D F+V
Sbjct: 824 PPSVNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYV 883

Query: 82  IDQQGKKIT 90
            D  G+KI+
Sbjct: 884 TDLVGQKIS 892

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhizobium leguminosarum bv. viciae (taxid: 387)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense GN=glnD PE=3 SV=1

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 50/81 (61%)

Query: 22  PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
           PPR  +DN++    TV++V+  ++PG+L ++ + L++L L I+ A IS+ G   +DVF+V
Sbjct: 844 PPRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYV 903

Query: 82  IDQQGKKITDGKTIDYIEKAL 102
            D  G K+T    +  I + L
Sbjct: 904 KDVFGLKVTHENKLAQIRERL 924

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Azospirillum brasilense (taxid: 192)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|A5VN81|GLND_BRUO2 [Protein-PII] uridylyltransferase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=glnD PE=3 SV=1

 Score = 56.6 bits (135), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 54/92 (58%)

Query: 23  PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
           PR  ++N+   + TV++V+ +++PG+L E+  ++SDL L I  A+I++ G   +D F+V 
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893

Query: 83  DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
           D  G KI++      I++ L        GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) (taxid: 444178)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q8G312|GLND_BRUSU [Protein-PII] uridylyltransferase OS=Brucella suis biovar 1 (strain 1330) GN=glnD PE=3 SV=1

 Score = 56.6 bits (135), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 54/92 (58%)

Query: 23  PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
           PR  ++N+   + TV++V+ +++PG+L E+  ++SDL L I  A+I++ G   +D F+V 
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893

Query: 83  DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
           D  G KI++      I++ L        GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Brucella suis biovar 1 (strain 1330) (taxid: 204722)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q8YES3|GLND_BRUME [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=glnD PE=3 SV=1

 Score = 56.6 bits (135), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 54/92 (58%)

Query: 23  PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
           PR  ++N+   + TV++V+ +++PG+L E+  ++SDL L I  A+I++ G   +D F+V 
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893

Query: 83  DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
           D  G KI++      I++ L        GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) (taxid: 224914)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|C0RGK0|GLND_BRUMB [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=glnD PE=3 SV=1

 Score = 56.6 bits (135), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 54/92 (58%)

Query: 23  PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
           PR  ++N+   + TV++V+ +++PG+L E+  ++SDL L I  A+I++ G   +D F+V 
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893

Query: 83  DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
           D  G KI++      I++ L        GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Brucella melitensis biotype 2 (strain ATCC 23457) (taxid: 546272)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q57FN0|GLND_BRUAB [Protein-PII] uridylyltransferase OS=Brucella abortus biovar 1 (strain 9-941) GN=glnD PE=3 SV=1

 Score = 56.6 bits (135), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 54/92 (58%)

Query: 23  PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
           PR  ++N+   + TV++V+ +++PG+L E+  ++SDL L I  A+I++ G   +D F+V 
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893

Query: 83  DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
           D  G KI++      I++ L        GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Brucella abortus biovar 1 (strain 9-941) (taxid: 262698)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	456
302142726	466	unnamed protein product [Vitis vinifera]	0.978	0.957	0.821	0.0
359492290	465	PREDICTED: uncharacterized protein LOC10	0.978	0.959	0.821	0.0
225457853	447	PREDICTED: uncharacterized protein LOC10	0.978	0.997	0.821	0.0
255558468	447	amino acid binding protein, putative [Ri	0.980	1.0	0.824	0.0
224066763	444	predicted protein [Populus trichocarpa]	0.973	1.0	0.820	0.0
224082380	445	predicted protein [Populus trichocarpa]	0.975	1.0	0.817	0.0
356509344	445	PREDICTED: uncharacterized protein LOC10	0.973	0.997	0.793	0.0
356515959	445	PREDICTED: uncharacterized protein LOC10	0.973	0.997	0.786	0.0
356552731	448	PREDICTED: uncharacterized protein LOC10	0.982	1.0	0.769	0.0
356546978	449	PREDICTED: uncharacterized protein LOC10	0.984	1.0	0.763	0.0

>gi|302142726|emb|CBI19929.3| unnamed protein product [Vitis vinifera]

 Score =  778 bits (2010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/455 (82%), Positives = 408/455 (89%), Gaps = 9/455 (1%)

Query: 1   MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
           MA   WPYFDPEYE+LS+RINPPR SVDN SC +CT++KVDS+NKPGILLEVVQ+L+D+D
Sbjct: 20  MAKVCWPYFDPEYENLSMRINPPRVSVDNLSCSDCTLIKVDSMNKPGILLEVVQILTDID 79

Query: 61  LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
           L+ITKAYISSDGGWFMDVFHV DQQG KITDGK IDYIEKALGPKG    G KTWP K+V
Sbjct: 80  LLITKAYISSDGGWFMDVFHVTDQQGNKITDGKIIDYIEKALGPKGDTIDGVKTWPGKRV 139

Query: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
           GVHSVGDHTAIELIG+DRPGLLSEISAVLA+L FNV  AEVWTHNRRIACV+YVNDD TC
Sbjct: 140 GVHSVGDHTAIELIGKDRPGLLSEISAVLADLHFNVVGAEVWTHNRRIACVVYVNDDATC 199

Query: 181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
           RAV D TRLS+MEEQLKN+LRGC+D+D  KVARTSFSMGFTHVDRRLHQM FADRDYEGG
Sbjct: 200 RAVDDPTRLSVMEEQLKNVLRGCEDDD--KVARTSFSMGFTHVDRRLHQMLFADRDYEGG 257

Query: 241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
           G T   + D+ PSFKP+IT++R EDKGYS V+V C+DR KLMFDIVCTLTDMQYVVFHA+
Sbjct: 258 GTTI--EADYPPSFKPKITIDRCEDKGYSAVSVMCKDRPKLMFDIVCTLTDMQYVVFHAS 315

Query: 301 ISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLL 360
           ISSDGP+ASQEY+IRHMDGC LD EGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLL
Sbjct: 316 ISSDGPYASQEYFIRHMDGCTLDNEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLL 375

Query: 361 SEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTMLFNV 420
           SEVTR+LRE+GLSVTRAGVSTVGEQA+NVFYVRDASG PVDMKTIEALRKEIGHTM+ NV
Sbjct: 376 SEVTRVLREHGLSVTRAGVSTVGEQAMNVFYVRDASGKPVDMKTIEALRKEIGHTMMLNV 435

Query: 421 KKVPASRSAYKEPEASIAGWPKTSFFFGNLFERFL 455
           KK P+S    K PEAS  GW KTSFFFG+LFERFL
Sbjct: 436 KKEPSSA---KTPEAS--GWAKTSFFFGSLFERFL 465

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492290|ref|XP_003634395.1| PREDICTED: uncharacterized protein LOC100250578 isoform 2 [Vitis vinifera]

 Score =  778 bits (2010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/455 (82%), Positives = 408/455 (89%), Gaps = 9/455 (1%)

Query: 1   MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
           MA   WPYFDPEYE+LS+RINPPR SVDN SC +CT++KVDS+NKPGILLEVVQ+L+D+D
Sbjct: 19  MAKVCWPYFDPEYENLSMRINPPRVSVDNLSCSDCTLIKVDSMNKPGILLEVVQILTDID 78

Query: 61  LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
           L+ITKAYISSDGGWFMDVFHV DQQG KITDGK IDYIEKALGPKG    G KTWP K+V
Sbjct: 79  LLITKAYISSDGGWFMDVFHVTDQQGNKITDGKIIDYIEKALGPKGDTIDGVKTWPGKRV 138

Query: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
           GVHSVGDHTAIELIG+DRPGLLSEISAVLA+L FNV  AEVWTHNRRIACV+YVNDD TC
Sbjct: 139 GVHSVGDHTAIELIGKDRPGLLSEISAVLADLHFNVVGAEVWTHNRRIACVVYVNDDATC 198

Query: 181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
           RAV D TRLS+MEEQLKN+LRGC+D+D  KVARTSFSMGFTHVDRRLHQM FADRDYEGG
Sbjct: 199 RAVDDPTRLSVMEEQLKNVLRGCEDDD--KVARTSFSMGFTHVDRRLHQMLFADRDYEGG 256

Query: 241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
           G T   + D+ PSFKP+IT++R EDKGYS V+V C+DR KLMFDIVCTLTDMQYVVFHA+
Sbjct: 257 GTTI--EADYPPSFKPKITIDRCEDKGYSAVSVMCKDRPKLMFDIVCTLTDMQYVVFHAS 314

Query: 301 ISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLL 360
           ISSDGP+ASQEY+IRHMDGC LD EGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLL
Sbjct: 315 ISSDGPYASQEYFIRHMDGCTLDNEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLL 374

Query: 361 SEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTMLFNV 420
           SEVTR+LRE+GLSVTRAGVSTVGEQA+NVFYVRDASG PVDMKTIEALRKEIGHTM+ NV
Sbjct: 375 SEVTRVLREHGLSVTRAGVSTVGEQAMNVFYVRDASGKPVDMKTIEALRKEIGHTMMLNV 434

Query: 421 KKVPASRSAYKEPEASIAGWPKTSFFFGNLFERFL 455
           KK P+S    K PEAS  GW KTSFFFG+LFERFL
Sbjct: 435 KKEPSSA---KTPEAS--GWAKTSFFFGSLFERFL 464

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457853|ref|XP_002268570.1| PREDICTED: uncharacterized protein LOC100250578 isoform 1 [Vitis vinifera] gi|147789965|emb|CAN73861.1| hypothetical protein VITISV_007291 [Vitis vinifera]

 Score =  778 bits (2009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/455 (82%), Positives = 408/455 (89%), Gaps = 9/455 (1%)

Query: 1   MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
           MA   WPYFDPEYE+LS+RINPPR SVDN SC +CT++KVDS+NKPGILLEVVQ+L+D+D
Sbjct: 1   MAKVCWPYFDPEYENLSMRINPPRVSVDNLSCSDCTLIKVDSMNKPGILLEVVQILTDID 60

Query: 61  LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
           L+ITKAYISSDGGWFMDVFHV DQQG KITDGK IDYIEKALGPKG    G KTWP K+V
Sbjct: 61  LLITKAYISSDGGWFMDVFHVTDQQGNKITDGKIIDYIEKALGPKGDTIDGVKTWPGKRV 120

Query: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
           GVHSVGDHTAIELIG+DRPGLLSEISAVLA+L FNV  AEVWTHNRRIACV+YVNDD TC
Sbjct: 121 GVHSVGDHTAIELIGKDRPGLLSEISAVLADLHFNVVGAEVWTHNRRIACVVYVNDDATC 180

Query: 181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
           RAV D TRLS+MEEQLKN+LRGC+D+D  KVARTSFSMGFTHVDRRLHQM FADRDYEGG
Sbjct: 181 RAVDDPTRLSVMEEQLKNVLRGCEDDD--KVARTSFSMGFTHVDRRLHQMLFADRDYEGG 238

Query: 241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
           G T   + D+ PSFKP+IT++R EDKGYS V+V C+DR KLMFDIVCTLTDMQYVVFHA+
Sbjct: 239 GTTI--EADYPPSFKPKITIDRCEDKGYSAVSVMCKDRPKLMFDIVCTLTDMQYVVFHAS 296

Query: 301 ISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLL 360
           ISSDGP+ASQEY+IRHMDGC LD EGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLL
Sbjct: 297 ISSDGPYASQEYFIRHMDGCTLDNEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLL 356

Query: 361 SEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTMLFNV 420
           SEVTR+LRE+GLSVTRAGVSTVGEQA+NVFYVRDASG PVDMKTIEALRKEIGHTM+ NV
Sbjct: 357 SEVTRVLREHGLSVTRAGVSTVGEQAMNVFYVRDASGKPVDMKTIEALRKEIGHTMMLNV 416

Query: 421 KKVPASRSAYKEPEASIAGWPKTSFFFGNLFERFL 455
           KK P+S    K PEAS  GW KTSFFFG+LFERFL
Sbjct: 417 KKEPSSA---KTPEAS--GWAKTSFFFGSLFERFL 446

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558468|ref|XP_002520259.1| amino acid binding protein, putative [Ricinus communis] gi|223540478|gb|EEF42045.1| amino acid binding protein, putative [Ricinus communis]

 Score =  775 bits (2002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/456 (82%), Positives = 408/456 (89%), Gaps = 9/456 (1%)

Query: 1   MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
           MA   WPYFDPEYE+LS RINPPR SVDN+SC ECT++KVDS+NKPGILLEVVQ+L+DLD
Sbjct: 1   MAKVCWPYFDPEYENLSTRINPPRVSVDNTSCNECTLIKVDSMNKPGILLEVVQILTDLD 60

Query: 61  LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
            IITKAYISSDGGWFMD+FHV DQQGKKI D KTIDYIEKALGPK +     KTWP K+V
Sbjct: 61  FIITKAYISSDGGWFMDIFHVTDQQGKKIIDSKTIDYIEKALGPKEYNKDELKTWPGKRV 120

Query: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
           GVHSVGD+TAIELIGRDRPGLLSEI+AVLANL FNVAAAEVWTHNRRIACV+YVND TTC
Sbjct: 121 GVHSVGDYTAIELIGRDRPGLLSEITAVLANLHFNVAAAEVWTHNRRIACVVYVNDYTTC 180

Query: 181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
           R V D TRLS+MEEQLKNILRGC  ED EK +RTSFSMGFTH+DRRLHQMFFADRDYEGG
Sbjct: 181 RPVDDPTRLSVMEEQLKNILRGC--EDDEKASRTSFSMGFTHIDRRLHQMFFADRDYEGG 238

Query: 241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
           GVT  ++V++  SFKP+ITVER  +KGYSVV+V C+DRAKL+FDIVCTLTDMQYVVFHA 
Sbjct: 239 GVT--NEVEYPSSFKPKITVERCGEKGYSVVSVCCKDRAKLLFDIVCTLTDMQYVVFHAT 296

Query: 301 ISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLL 360
           ISSDGP+ASQEYYIRHMDGC LDTEGEKERVIKCLEAAIRRRV EGLSLELCAKDRVGLL
Sbjct: 297 ISSDGPYASQEYYIRHMDGCTLDTEGEKERVIKCLEAAIRRRVCEGLSLELCAKDRVGLL 356

Query: 361 SEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTMLFNV 420
           SEVTR+LRENGLSVTRAGV+TVGEQA+NVFYVRD+SGNPVDMKTIEALRKEIGHTM+ NV
Sbjct: 357 SEVTRVLRENGLSVTRAGVTTVGEQAMNVFYVRDSSGNPVDMKTIEALRKEIGHTMMLNV 416

Query: 421 KKVPASRSAYKEPEASIAGWPKTSFFFGNLFERFLA 456
           KK P S S   +PEA   GW KTSFFFGNL ERFLA
Sbjct: 417 KKTPVSAS---QPEAK--GWAKTSFFFGNLLERFLA 447

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066763|ref|XP_002302203.1| predicted protein [Populus trichocarpa] gi|222843929|gb|EEE81476.1| predicted protein [Populus trichocarpa]

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/456 (82%), Positives = 402/456 (88%), Gaps = 12/456 (2%)

Query: 1   MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
           MA+  WPYFDPEYE+LS RINPPR SVDN+SC + T+VKVDS+NKPGILLEVVQVL+DLD
Sbjct: 1   MASVCWPYFDPEYENLSTRINPPRVSVDNTSCNDSTLVKVDSMNKPGILLEVVQVLTDLD 60

Query: 61  LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
           LIITKAYISSDGGWFMDVFHV DQQGKKITD KTIDYIEKALGPK        TW  K+V
Sbjct: 61  LIITKAYISSDGGWFMDVFHVTDQQGKKITDIKTIDYIEKALGPKSQ--EEVTTWADKRV 118

Query: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
           GVHSVG HTAIELIG+DRPGLLSEISAVLANL FNV AAEVWTHN RIACV+YVNDDTT 
Sbjct: 119 GVHSVGGHTAIELIGKDRPGLLSEISAVLANLHFNVVAAEVWTHNSRIACVVYVNDDTTS 178

Query: 181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
           RAV D TRLS+ME+QLKNILRGC+++++    RTSFSMGFTHVDRRLHQM FADRDYEGG
Sbjct: 179 RAVADPTRLSIMEDQLKNILRGCENDEA---GRTSFSMGFTHVDRRLHQMLFADRDYEGG 235

Query: 241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
            V T  +VD+ PS KP+ITVER EDKGYSVV V+C+DRAKLMFDIVCTLTDMQYVVFHA 
Sbjct: 236 IVAT--EVDYPPSIKPKITVERCEDKGYSVVTVRCKDRAKLMFDIVCTLTDMQYVVFHAT 293

Query: 301 ISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLL 360
           ISSDGPHASQEYYIRHMDGC+LDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLL
Sbjct: 294 ISSDGPHASQEYYIRHMDGCVLDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLL 353

Query: 361 SEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTMLFNV 420
           SEVTRILRENGL+V+RAGV T+GEQA NVFYVRDASGNPVD K IEALRKEIGHTM+ NV
Sbjct: 354 SEVTRILRENGLAVSRAGVMTIGEQATNVFYVRDASGNPVDTKIIEALRKEIGHTMMLNV 413

Query: 421 KKVPASRSAYKEPEASIAGWPKTSFFFGNLFERFLA 456
           KK PAS    +EPEA   GW KTSFFFGNL ERFLA
Sbjct: 414 KKTPASS---REPEAR--GWAKTSFFFGNLLERFLA 444

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082380|ref|XP_002306671.1| predicted protein [Populus trichocarpa] gi|222856120|gb|EEE93667.1| predicted protein [Populus trichocarpa]

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/456 (81%), Positives = 398/456 (87%), Gaps = 11/456 (2%)

Query: 1   MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
           MA   WPYFDPEYE+LS RINPPR SVDN+SC + T++KVDS+NKPGILLEVVQ+L+DLD
Sbjct: 1   MAKVCWPYFDPEYENLSTRINPPRVSVDNTSCSDSTLIKVDSMNKPGILLEVVQILTDLD 60

Query: 61  LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
           LIITKAYISSDGGWFMDVFHV DQQGKKI D KTIDYIEKALGPKG       TW  K V
Sbjct: 61  LIITKAYISSDGGWFMDVFHVTDQQGKKIADLKTIDYIEKALGPKGQ--EEVTTWSGKPV 118

Query: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
           GVHSVGDHTAIEL GRDRPGLLSEISAVLANL FNV AAEVWTHNRRIACV+YVNDDTT 
Sbjct: 119 GVHSVGDHTAIELTGRDRPGLLSEISAVLANLHFNVVAAEVWTHNRRIACVVYVNDDTTS 178

Query: 181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
           RAV D TRLS ME+QLKNILRGCDD+  EK  RTSFSMGFTHVDRRLHQM FADRDYEGG
Sbjct: 179 RAVDDPTRLSAMEDQLKNILRGCDDD--EKEGRTSFSMGFTHVDRRLHQMLFADRDYEGG 236

Query: 241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
            V T  ++   PSFKP+ITVE  E+KGYSVV V+C+DRAKLMFDIVCTLTDMQYVVFHA 
Sbjct: 237 IVAT--EIHDPPSFKPKITVEHCEEKGYSVVTVRCKDRAKLMFDIVCTLTDMQYVVFHAT 294

Query: 301 ISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLL 360
           ISSD PHASQEYYIRHMDGC+LDTEGEK+RVIKCLEAAIRRRVSEGLSLELCAKDRVGLL
Sbjct: 295 ISSDAPHASQEYYIRHMDGCVLDTEGEKDRVIKCLEAAIRRRVSEGLSLELCAKDRVGLL 354

Query: 361 SEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTMLFNV 420
           SEVTRILRENGLSV+RAGV T+GEQA+NVFYVRDASGNPVDMK IEALR+EIGHTM+ NV
Sbjct: 355 SEVTRILRENGLSVSRAGVMTIGEQAMNVFYVRDASGNPVDMKIIEALRREIGHTMMLNV 414

Query: 421 KKVPASRSAYKEPEASIAGWPKTSFFFGNLFERFLA 456
           KK P S    +EPEA   GW KTSFFFGNL ERFLA
Sbjct: 415 KKPPVSS---REPEAR--GWAKTSFFFGNLLERFLA 445

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509344|ref|XP_003523410.1| PREDICTED: uncharacterized protein LOC100789173 [Glycine max]

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/455 (79%), Positives = 395/455 (86%), Gaps = 11/455 (2%)

Query: 1   MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
           MA   WPYFDPEYE+ S R+NPPR S+DN+SC +CT++KVDSVNKPGILLEVVQ+L+DLD
Sbjct: 1   MAKVCWPYFDPEYENFSNRMNPPRVSMDNASCHDCTLIKVDSVNKPGILLEVVQILTDLD 60

Query: 61  LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
            IITKAYISSDGGWFMDVFHV DQQGKKITD KTID+IEKALGPK   T G K WPSK+V
Sbjct: 61  FIITKAYISSDGGWFMDVFHVTDQQGKKITDSKTIDFIEKALGPKSQSTEGVKNWPSKRV 120

Query: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
           GVHSVGDHTAIELIGRDRPGLLSEISAVLANL FNV AAEVWTHNRRIACVLYVND T  
Sbjct: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLHFNVFAAEVWTHNRRIACVLYVNDATN- 179

Query: 181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
           +AV +  RLSLMEEQL NILRGC   D EKVARTSFSMG TH+DRRLHQM FADRDYE  
Sbjct: 180 QAVDEANRLSLMEEQLNNILRGC---DGEKVARTSFSMGSTHMDRRLHQMLFADRDYESY 236

Query: 241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
            V  A +VD  PS +P+IT+ER E+KGYSVV+VKC+DRAKLMFDIVCTLTDMQYVVFHA 
Sbjct: 237 AV--AREVDSPPSLRPKITIERCEEKGYSVVSVKCKDRAKLMFDIVCTLTDMQYVVFHAT 294

Query: 301 ISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLL 360
           +SSDGP+A QEY+IRHMDGC LDT+GEKERVI+C+EAAIRRRVSEG+SLELCAKDRVGLL
Sbjct: 295 VSSDGPYALQEYFIRHMDGCTLDTQGEKERVIQCIEAAIRRRVSEGVSLELCAKDRVGLL 354

Query: 361 SEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTMLFNV 420
           SEVTRILRENGL+V RAGVST GEQA+NVFYVRDASGNPVDMKT+EALRKEIG TM+ +V
Sbjct: 355 SEVTRILRENGLTVCRAGVSTRGEQALNVFYVRDASGNPVDMKTMEALRKEIGKTMMVDV 414

Query: 421 KKVPASRSAYKEPEASIAGWPKTSFFFGNLFERFL 455
           K+VP   S  K PE    GW KTSFFFGNL ERFL
Sbjct: 415 KRVP---SNAKAPETR--GWAKTSFFFGNLLERFL 444

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515959|ref|XP_003526664.1| PREDICTED: uncharacterized protein LOC100797293 [Glycine max]

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/455 (78%), Positives = 389/455 (85%), Gaps = 11/455 (2%)

Query: 1   MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
           MA   WPYFDPEYE+ S R+NPPR SVDN+SC +CT++K+DSVNKPGILLEVVQ+L+DLD
Sbjct: 1   MAKVCWPYFDPEYENFSNRMNPPRVSVDNASCHDCTLIKIDSVNKPGILLEVVQILTDLD 60

Query: 61  LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
            +ITKAYISSDGGWFMDVFHV DQQGKKITD KTID IEKALGPK   T G K WPSK V
Sbjct: 61  FVITKAYISSDGGWFMDVFHVTDQQGKKITDSKTIDLIEKALGPKSKSTEGVKNWPSKHV 120

Query: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
           GVHSVGD+TAIELIGRDRPGLLSEISAVLANL FNV AAEVWTHNRRIACVLYVND T  
Sbjct: 121 GVHSVGDYTAIELIGRDRPGLLSEISAVLANLHFNVFAAEVWTHNRRIACVLYVNDATN- 179

Query: 181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
           +   D  RLSLMEEQL NILRGC   D EKVARTSFSMG TH+DRRLHQM FADRDYE  
Sbjct: 180 QVADDPKRLSLMEEQLNNILRGC---DGEKVARTSFSMGSTHMDRRLHQMLFADRDYESY 236

Query: 241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
            V  A +VD  PS +P IT+ER E+KGYSVV+VKC+DRAKLMFDIVCTLTDMQYVVFHA 
Sbjct: 237 AV--AREVDSPPSLRPRITIERCEEKGYSVVSVKCKDRAKLMFDIVCTLTDMQYVVFHAT 294

Query: 301 ISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLL 360
           +SSDGP+A QEY+IRHMDGC LDT+GEKERVI+C+EAAIRRRVSEG+SLELCAKDRVGLL
Sbjct: 295 VSSDGPYALQEYFIRHMDGCTLDTQGEKERVIQCIEAAIRRRVSEGVSLELCAKDRVGLL 354

Query: 361 SEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTMLFNV 420
           SEVTRILRENGLSV RAGVST GEQA+NVFYVRDASGNPVDMKT+EAL KEIG TM+ +V
Sbjct: 355 SEVTRILRENGLSVCRAGVSTRGEQALNVFYVRDASGNPVDMKTMEALCKEIGKTMMVDV 414

Query: 421 KKVPASRSAYKEPEASIAGWPKTSFFFGNLFERFL 455
           K+VP   S  K PE    GW KTSFFFGNL ERFL
Sbjct: 415 KRVP---SNTKAPETR--GWAKTSFFFGNLLERFL 444

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552731|ref|XP_003544716.1| PREDICTED: uncharacterized protein LOC100789044 [Glycine max]

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/456 (76%), Positives = 391/456 (85%), Gaps = 8/456 (1%)

Query: 1   MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
           MA   WPYFDPEYE+ S RINPPR SVDN SC +CT++K DS+NKPGILLEVVQ+L+DLD
Sbjct: 1   MAKVCWPYFDPEYENFSNRINPPRVSVDNDSCHDCTLIKFDSINKPGILLEVVQILTDLD 60

Query: 61  LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
            IITKAYISSDGGWFMDVFHV DQQGKKITD KTID+IEK LGPKG  T G   W  K+V
Sbjct: 61  FIITKAYISSDGGWFMDVFHVTDQQGKKITDSKTIDFIEKTLGPKGQSTEGVNCWQGKRV 120

Query: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
           GVHS+GDHTAIELIGRDRPGLLSEISAVLA+L+FNV AAEVWTHNRRIACVLYVND T  
Sbjct: 121 GVHSIGDHTAIELIGRDRPGLLSEISAVLASLQFNVIAAEVWTHNRRIACVLYVNDATN- 179

Query: 181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
           +A+ D  RLS+MEEQL +ILRGC  ED EKVARTSF+MGFTH+DRRLHQM FADRDYE  
Sbjct: 180 QAMDDSKRLSIMEEQLNHILRGC--EDDEKVARTSFTMGFTHMDRRLHQMLFADRDYESV 237

Query: 241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
           G+TT D VD  PSF+P+I +ER+ +KGYSVV+V+C+DRAKLMFDIVCTLTDM+YVVFHA 
Sbjct: 238 GLTTTD-VDCPPSFRPKIRIERIVEKGYSVVSVRCKDRAKLMFDIVCTLTDMEYVVFHAT 296

Query: 301 ISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLL 360
           ISS+G +ASQEY+IRHMDGC LDTEGEKERVIKC+EAAI+RRVSEG+SLELCAKDRVGLL
Sbjct: 297 ISSEGQYASQEYFIRHMDGCTLDTEGEKERVIKCIEAAIQRRVSEGVSLELCAKDRVGLL 356

Query: 361 SEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTMLFNV 420
           SEVTRILRENGL V+RAGVSTVGE+ +NVFYVRDASGNPVDMK IEAL KEIG  M+ NV
Sbjct: 357 SEVTRILRENGLRVSRAGVSTVGEKGLNVFYVRDASGNPVDMKIIEALHKEIGQIMMVNV 416

Query: 421 KKVPASRSAYKEPEASIAGWPKTSFFFGNLFERFLA 456
           K+VP     Y +  A   GW KTSFFFGNL ERFL 
Sbjct: 417 KRVP----GYVKAPAETRGWAKTSFFFGNLLERFLT 448

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546978|ref|XP_003541896.1| PREDICTED: uncharacterized protein LOC100797658 [Glycine max]

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/456 (76%), Positives = 390/456 (85%), Gaps = 7/456 (1%)

Query: 1   MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
           M    WPYFDPEYE+ S RINPPR SVDN SC +CT++K DS+NKPGILLEVVQ+L+DLD
Sbjct: 1   MTKVCWPYFDPEYENFSNRINPPRVSVDNDSCHDCTLIKFDSINKPGILLEVVQILTDLD 60

Query: 61  LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
            IITKAYISSDGGWFMDVFHV DQQGKKITD KTID+IEK LGPKG  T G K+W  K+V
Sbjct: 61  FIITKAYISSDGGWFMDVFHVTDQQGKKITDSKTIDFIEKTLGPKGQSTEGVKSWKGKRV 120

Query: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
           GVHS+GDHT IELIGRDRPGLLSEISAVLA+L+FNV AAEVWTHNRRIACVLYVND T  
Sbjct: 121 GVHSIGDHTVIELIGRDRPGLLSEISAVLASLQFNVIAAEVWTHNRRIACVLYVNDATN- 179

Query: 181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
           +A+ D  RLS++EEQL +ILRGC  ED EKVARTSFSMG TH+DRRLHQM FADRDYE  
Sbjct: 180 QAMDDSKRLSIIEEQLNHILRGC--EDDEKVARTSFSMGITHMDRRLHQMLFADRDYESA 237

Query: 241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
           GVTT D VD  P F+P I +ER+ +KGYSVV+VKC+DRAKLMFDIVCTLTDM+YVVFHA 
Sbjct: 238 GVTTTD-VDCPPCFRPNIRIERIVEKGYSVVSVKCKDRAKLMFDIVCTLTDMEYVVFHAT 296

Query: 301 ISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLL 360
           ISS+G +ASQEY+IRHMDGC LDTEGEKER IKC+EAAI+RRVSEG+SLELCAKDRVGLL
Sbjct: 297 ISSEGQYASQEYFIRHMDGCTLDTEGEKERAIKCIEAAIQRRVSEGVSLELCAKDRVGLL 356

Query: 361 SEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTMLFNV 420
           SEVTRILRENGL+V+RAGVSTVGE+ +NVFYVRDASGNPVDMK IEAL KEIG T++ NV
Sbjct: 357 SEVTRILRENGLTVSRAGVSTVGEKGLNVFYVRDASGNPVDMKIIEALHKEIGQTVMVNV 416

Query: 421 KKVPASRSAYKEPEASIAGWPKTSFFFGNLFERFLA 456
           K++PA   AY +      GW +TSFFFGNL ERFL 
Sbjct: 417 KRIPA---AYAKAPVETRGWARTSFFFGNLLERFLT 449

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	456
TAIR|locus:2025317	453	ACR3 "ACT domain repeat 3" [Ar	0.986	0.993	0.759	5.8e-185
TAIR|locus:2033223	455	ACR4 "ACT domain repeat 4" [Ar	0.942	0.945	0.537	8.8e-118
TAIR|locus:2044289	456	ACR5 "ACT domain repeat 5" [Ar	0.938	0.938	0.526	1.8e-110
TAIR|locus:2145482	500	AT5G25320 [Arabidopsis thalian	0.482	0.44	0.5	9.1e-109
TAIR|locus:2078678	433	ACR6 "ACT domain repeat 6" [Ar	0.872	0.919	0.528	1.2e-106
TAIR|locus:2152094	477	ACR1 "ACT domain repeat 1" [Ar	0.923	0.882	0.464	1.9e-92
TAIR|locus:2034630	441	ACR8 "AT1G12420" [Arabidopsis	0.629	0.650	0.488	2.4e-69
TAIR|locus:2132609	449	ACR7 "ACT domain repeat 7" [Ar	0.646	0.657	0.488	1e-68
TIGR_CMR|GSU_1820	902	GSU_1820 "protein-P-II uridyly	0.190	0.096	0.307	5.2e-06
TAIR|locus:2057936	410	ACR10 "ACT domain repeats 10"	0.640	0.712	0.215	5.2e-05

TAIR|locus:2025317 ACR3 "ACT domain repeat 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1794 (636.6 bits), Expect = 5.8e-185, P = 5.8e-185
 Identities = 347/457 (75%), Positives = 386/457 (84%)

Query:     1 MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
             MA  YWPYFDPEYE+LS RINPP  S+DN+SC ECT+VKVDS+NKPGILLEVVQVL+DLD
Sbjct:     1 MAKVYWPYFDPEYENLSSRINPPSVSIDNTSCKECTLVKVDSMNKPGILLEVVQVLTDLD 60

Query:    61 LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
             L ITKAYISSDGGWFMDVFHV DQQG K+TD KTIDYIEK LGPKGH +A   TWP K+V
Sbjct:    61 LTITKAYISSDGGWFMDVFHVTDQQGNKVTDSKTIDYIEKVLGPKGHASASQNTWPGKRV 120

Query:   121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
             GVHS+GDHT+IE+I RDRPGLLSE+SAVLA+L  NV AAE WTHNRRIACVLYVND+ T 
Sbjct:   121 GVHSLGDHTSIEIIARDRPGLLSEVSAVLADLNINVVAAEAWTHNRRIACVLYVNDNATS 180

Query:   181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
             RAV D  RLS MEEQL N+LRGC+++D EK ARTS S+G THVDRRLHQMFFADRDYE  
Sbjct:   181 RAVDDPERLSSMEEQLNNVLRGCEEQD-EKFARTSLSIGSTHVDRRLHQMFFADRDYEA- 238

Query:   241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
              VT  D    +  F+P+ITVE  E+KGYSV+NV C DR KLMFDIVCTLTDMQY+VFHA 
Sbjct:   239 -VTKLDD-SASCGFEPKITVEHCEEKGYSVINVSCEDRPKLMFDIVCTLTDMQYIVFHAT 296

Query:   301 ISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLL 360
             ISS G HASQEY+IRH DGC LDTEGEKERV+KCLEAAI RRVSEG SLELCAKDRVGLL
Sbjct:   297 ISSSGSHASQEYFIRHKDGCTLDTEGEKERVVKCLEAAIHRRVSEGWSLELCAKDRVGLL 356

Query:   361 SEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTMLFNV 420
             SEVTRILRE+GLSV+RAGV+TVGEQAVNVFYV+DASGNPVD+KTIEALR EIGH+M+ + 
Sbjct:   357 SEVTRILREHGLSVSRAGVTTVGEQAVNVFYVKDASGNPVDVKTIEALRGEIGHSMMIDF 416

Query:   421 K-KVPASRSAYKEPEASIAG-WPKTSFFFGNLFERFL 455
             K KVP SR   +E +A   G W KTSFFFGNL E+ L
Sbjct:   417 KNKVP-SRKWKEEGQAGTGGGWAKTSFFFGNLLEKLL 452

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008773 "[protein-PII

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=TAS

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2033223 ACR4 "ACT domain repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1160 (413.4 bits), Expect = 8.8e-118, P = 8.8e-118
 Identities = 238/443 (53%), Positives = 306/443 (69%)

Query:    10 DPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS 69
             D EYE L  R+NPPR  +DN SC + TV++VDS N+ GILLEVVQ+L+DL+L ITKAYIS
Sbjct:    12 DNEYEKLIRRMNPPRVVIDNDSCKKATVIRVDSANEYGILLEVVQILTDLNLTITKAYIS 71

Query:    70 SDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHT 129
             SDGGWFMDVF+V DQ G K+TD   +DYI+K+LGP+   +   ++     VGV    D T
Sbjct:    72 SDGGWFMDVFNVTDQDGNKVTDEVVLDYIQKSLGPEACFSTSMRS-----VGVIPSTDST 126

Query:   130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRL 189
              IEL G DRPGLLSE+SAVL +L+ +V  AE+WTHN R A V+ V DD T   + D  RL
Sbjct:   127 VIELTGCDRPGLLSELSAVLTHLKCSVLNAEIWTHNTRAAAVMQVTDDLTGCGISDPERL 186

Query:   190 SLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVD 249
             S ++  L+N+L+G    ++ + A+T  S G  H DRRLHQM F DRDYE   V     + 
Sbjct:   187 SRIKNLLRNVLKG---SNTPREAKTVVSHGEVHTDRRLHQMMFEDRDYEHRLVDDDSSIQ 243

Query:   250 HTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHAS 309
                  +P++ V+   DK YSVV V+C+DR KL+FD VCTLTDMQYVVFH ++ ++G  A 
Sbjct:   244 DERQ-RPDVCVDNWLDKDYSVVTVRCKDRPKLLFDTVCTLTDMQYVVFHGSVDTEGTEAF 302

Query:   310 QEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLLSEVTRILRE 369
             QEYY+RH+DG  + +E EK+RVI+CLEAAI+RRVSEGL LELC  DRVGLLS VTRI RE
Sbjct:   303 QEYYVRHIDGSPVKSEAEKQRVIQCLEAAIKRRVSEGLKLELCTTDRVGLLSNVTRIFRE 362

Query:   370 NGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTMLFNVKKVPASRSA 429
             N L+VTRA V T G +A+N FYV DASG  +D KTI+++R+ IG T+L  VK  P  +  
Sbjct:   363 NSLTVTRAEVKTKGGKALNTFYVSDASGYSIDAKTIDSIRQTIGQTIL-KVKNNPQEQ-- 419

Query:   430 YKEPEASIAGWPKTSFFFGNLFE 452
              ++ + S +    T F FG LF+
Sbjct:   420 -QQRQKSPSHESPTRFLFGGLFK 441

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

TAIR|locus:2044289 ACR5 "ACT domain repeat 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1091 (389.1 bits), Expect = 1.8e-110, P = 1.8e-110
 Identities = 232/441 (52%), Positives = 292/441 (66%)

Query:    10 DPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS 69
             D E      R+NPPR  +DN  C + TV+KVDS NK GILLEVVQVL++L+L I KAYIS
Sbjct:    12 DDEIAKFIRRVNPPRVVIDNEVCKDVTVIKVDSANKHGILLEVVQVLTELNLTIKKAYIS 71

Query:    70 SDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHT 129
             SDGGWFMDVF+V DQ G K+TD   ++YI K+LGP    +  + +  S  +GV    D+T
Sbjct:    72 SDGGWFMDVFNVTDQDGNKVTDEIVLEYIRKSLGPD-ESSCFSPSMRST-IGVKQSVDYT 129

Query:   130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRL 189
              +EL G DRPGLLSE+ AVL +L+ NV  AE+WTH  + A VL V D+ TC A+ D  RL
Sbjct:   130 VVELTGTDRPGLLSELCAVLMDLQCNVVNAEIWTHRAKAAAVLQVTDEETCSAITDPERL 189

Query:   190 SLMEEQLKNILRGCDDEDSEKVARTSFSMGF--THVDRRLHQMFFADRDYEGGGVTTADQ 247
             S + + L  +L G       +  +T+ S     TH DR+LHQ+ FADRDY+       D 
Sbjct:   190 SKIRKLLGYVLTGGSSGRRFREPKTTVSSALNETHTDRKLHQLMFADRDYDEWE-NNVDD 248

Query:   248 VDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPH 307
              D      P++ V  L D  YS+V +KC+DR KL+FD V TLTDM YVV HA+I ++GP 
Sbjct:   249 EDKCGRVIPDVDVSNLHDLDYSIVMIKCKDRPKLLFDTVFTLTDMNYVVSHASIDAEGPQ 308

Query:   308 ASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLLSEVTRIL 367
             A QEYYIRH DG  + +E E++RVIKCL+AAI+RRVSEGL LELC  DRVGLLS+VTRI 
Sbjct:   309 AYQEYYIRHTDGSPVKSEAERQRVIKCLKAAIQRRVSEGLKLELCTSDRVGLLSDVTRIF 368

Query:   368 RENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTMLFNVKKVPASR 427
             REN L+VTRA V T G++A+N FYVRDASG  VD KTIE++R+ IG T+L  VK    + 
Sbjct:   369 RENSLTVTRAEVKTKGDKALNTFYVRDASGYQVDTKTIESIRQVIGQTIL-QVKG--GNT 425

Query:   428 SAYKEPEASIAGWPKTSFFFG 448
              A   P+ S    P T F FG
Sbjct:   426 DAKPSPQDS----P-TGFLFG 441

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

TAIR|locus:2145482 AT5G25320 [Arabidopsis thaliana (taxid:3702)]

 Score = 566 (204.3 bits), Expect = 9.1e-109, Sum P(2) = 9.1e-109
 Identities = 117/234 (50%), Positives = 163/234 (69%)

Query:   221 THVDRRLHQMFFADRDY-----EGGGVTTA----DQVDHTPSFKPEITVERLEDKGYSVV 271
             ++++RRLHQ+  + RD+     E   ++      +  DH       +++   E++GYS+V
Sbjct:   240 SNMERRLHQLMLSVRDFDEPFCEPSSLSLLSSKLEYCDHKERKTTIVSIGNCEERGYSIV 299

Query:   272 NVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERV 331
              VK +DR +LMFD +CTL DMQYV+FHAA+ SDG  A QEY+IRH+DG  L+TEGEKERV
Sbjct:   300 TVKSKDRRRLMFDTICTLVDMQYVIFHAALRSDGADAFQEYFIRHIDGRALNTEGEKERV 359

Query:   332 IKCLEAAIRRRVSEGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFY 391
             IKCLEAAI RRV EG+ LELCA++RVGLLS++TR+LRENGL+V RA V T G++++N FY
Sbjct:   360 IKCLEAAIERRVCEGVKLELCAENRVGLLSDITRVLRENGLTVVRADVETQGQKSLNAFY 419

Query:   392 VRDASGNPVDMKTIEALRKEIG--HTMLFNVK-KVPASRSAYKEPEASIAGWPK 442
             VRD SGN +DM+ +E+++KE+   H  + N   K+    S   EP AS +  P+
Sbjct:   420 VRDISGNKIDMEFVESVKKEMRPIHLEVKNEDTKIDTVGS--DEPTASASATPQ 471

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

TAIR|locus:2078678 ACR6 "ACT domain repeat 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1055 (376.4 bits), Expect = 1.2e-106, P = 1.2e-106
 Identities = 219/414 (52%), Positives = 291/414 (70%)

Query:    10 DPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS 69
             D EY  L  R+NPPR  +DN++  + TV++VDSVNK G LLEVVQVL+D++L+I KAYIS
Sbjct:     3 DDEYAKLIRRMNPPRVVIDNNASDDATVIQVDSVNKHGTLLEVVQVLTDMNLVIKKAYIS 62

Query:    70 SDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQ-VGVHSVGDH 128
             SDGGWFMDVF VIDQ G KI D + +DYI+K +       AG    P +  VGV    ++
Sbjct:    63 SDGGWFMDVFKVIDQDGNKIRDTQVLDYIQKRI----ESNAGWFIPPLRSSVGVMPTDEY 118

Query:   129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
             T+IEL G DRPGLLSE+SAVL +L  NV  AE+WTHN R A V++V D++T  A+ D  R
Sbjct:   119 TSIELAGTDRPGLLSEVSAVLTDLHCNVVNAEIWTHNTRAAAVIHVTDNSTHSAITDPIR 178

Query:   189 LSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQV 248
             LS ++E L N++R        + A+T FS   TH +RRLHQ+ F DRDYEG  V  A   
Sbjct:   179 LSTIKELLCNVVR---TNSGSRAAKTVFSCSDTHRERRLHQIMFDDRDYEG--VKRA--- 230

Query:   249 DHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHA 308
               T + +P +T+  +E K Y+VV ++ +DR KL+FD+VCTLTDMQYVVFH  +S++   A
Sbjct:   231 -RTSASRPSVTLMNIE-KDYTVVTMRSKDRPKLVFDVVCTLTDMQYVVFHGMVSTEPVEA 288

Query:   309 SQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLLSEVTRILR 368
              QE+YIRH+DG  +++E E+ERVI+CLEAAI RR SEGL LEL A+DRVGLLS++TR  R
Sbjct:   289 YQEFYIRHVDGLPINSEAEQERVIQCLEAAIERRASEGLELELSAEDRVGLLSDITRTFR 348

Query:   369 ENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTMLFNVKK 422
             EN L++ RA +ST   +A + FYV D +GNPV+ K +E++R++IG + L  VKK
Sbjct:   349 ENSLTIVRAEISTREGKAKDTFYVTDVTGNPVESKIVESIRQQIGVSKL-KVKK 401

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2152094 ACR1 "ACT domain repeat 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 921 (329.3 bits), Expect = 1.9e-92, P = 1.9e-92
 Identities = 203/437 (46%), Positives = 277/437 (63%)

Query:     1 MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
             M  AY P  D E ESL  RINPPR  VDN S PECT++KVDS NK GILL++VQVL+DLD
Sbjct:     2 MEIAYQPRIDSEIESLVERINPPRVCVDNDSDPECTLIKVDSANKYGILLDMVQVLADLD 61

Query:    61 LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKAL--GPKGHITAGAKTWPSK 118
             L+I+K YISSDG WFMDVFHV DQ G K+TD   I YI++A+     G IT   ++   +
Sbjct:    62 LVISKCYISSDGEWFMDVFHVTDQLGNKLTDRSLILYIQQAICSSRTGGITKEMQSNLKR 121

Query:   119 QVGVHSVG-DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDD 177
             +V    V  +HTA E+ G +RPGLLSEISAVL+++  +V AA  WTH+ R A V+Y+ D 
Sbjct:   122 EVQQRHVSTEHTAFEITGINRPGLLSEISAVLSDIGCHVTAAVAWTHHERAAMVIYLEDG 181

Query:   178 TTCRAVGDQTRLSLMEEQLKNILRGCD--DEDSEKVART----SFSMGFTHVDRRLHQMF 231
                  + D  R + +++ L  ++       + S  V R        +G+ H +RRLH++ 
Sbjct:   182 FNGGPIIDPIRKAQVKDHLDTVMEAHHIVGDVSHVVVRVVEAKGVPVGWAHTERRLHELM 241

Query:   232 FADRDYEG--GGVTTADQVDHTPSFKPE---ITVERLEDKGYSVVNVKCRDRAKLMFDIV 286
             + + DYE         D+ D     + E   +T+E     GYS+VNVKCRDR KL+FD V
Sbjct:   242 YGEGDYENCFDCDCFGDRCDALWRGRCERIHVTIEACN--GYSMVNVKCRDRPKLLFDTV 299

Query:   287 CTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEG 346
             C L ++Q+VVFHA   + G  A QEY+IR  +G  L+TEG++ER+  CL AAI RR S+G
Sbjct:   300 CALKELQFVVFHAVAGAKGSTAEQEYFIRKKNGGTLETEGQRERLRHCLVAAISRRASQG 359

Query:   347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIE 406
             L LE+  ++++GLLS+VTR++RENGLS+TRA + T GE AV  FYV D +G       +E
Sbjct:   360 LKLEIRTENKMGLLSDVTRVVRENGLSITRAEMCTQGEIAVGSFYVTDVNGGETGPSEVE 419

Query:   407 ALRKEIGHTMLFNVKKV 423
             A+ +E+G  ++  VK V
Sbjct:   420 AVVRELGGAVVSAVKGV 436

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

TAIR|locus:2034630 ACR8 "AT1G12420" [Arabidopsis thaliana (taxid:3702)]

 Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
 Identities = 145/297 (48%), Positives = 202/297 (68%)

Query:   129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
             TA+EL G DR GLLSE+ AVL++L  +V  A++WTHN R+A V+Y+ D  +   + D  R
Sbjct:   114 TALELTGTDRIGLLSEMFAVLSDLNCDVVDAKLWTHNGRVASVIYLKDCISGAPILDSHR 173

Query:   189 LSLMEEQLKNILRGCDDEDSEKVARTSFSM-GFTHVDRRLHQMFFADRDYEGGGVTTADQ 247
             +S +E +LKN+L G  D D    A+T  ++    H++RRLHQ+ F DRDYE      + +
Sbjct:   174 ISKIEGRLKNVLNG--DNDVNSAAKTCVTVDSMMHIERRLHQLMFEDRDYE----RRSKK 227

Query:   248 VDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPH 307
              + +P     +TV+   ++GYSVVNV CRDR KL+FD+VCTLTDM+Y VFHA I++    
Sbjct:   228 HERSPMVV--VTVQNWAERGYSVVNVHCRDRTKLLFDVVCTLTDMEYAVFHATINTAEDQ 285

Query:   308 ASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLLSEVTRIL 367
             A  E+YIRH DG  + +E E++RVI+CLEAA+ RR  EG+ LEL   D+ GLL+EVTR  
Sbjct:   286 AHLEFYIRHKDGSPISSEAERQRVIQCLEAAVERRALEGVRLELRHPDKQGLLAEVTRTF 345

Query:   368 RENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTMLFNVKKVP 424
             RENGL+VTR  +ST  + A N+FYV DA+G+  D K IE++R++IG   L  VK++P
Sbjct:   346 RENGLNVTRTEISTSSDMATNIFYVTDANGDEPDFKLIESVREKIGLECL-RVKEMP 401

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2132609 ACR7 "ACT domain repeat 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 151/309 (48%), Positives = 208/309 (67%)

Query:   129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAV-GDQT 187
             TA+EL G DR GLLSE+ AVLA+L  +V  A+ WTHN RIA ++YV D  +   + GD  
Sbjct:   114 TALELTGTDRVGLLSEVFAVLADLECDVVEAKAWTHNGRIASMIYVKDGNSGTPIDGDSD 173

Query:   188 RLSLMEEQLKNILRGCDDEDSEKVARTSFSMGF-THVDRRLHQMFFADRDYEGGGVTTAD 246
             R+  +E QL+N+L+   D+  +   RT  S G  TH++RRLHQ  F DRDYE        
Sbjct:   174 RVQRVEGQLRNLLKA--DDGYQNDTRTCVSYGGNTHMERRLHQRMFMDRDYE-------K 224

Query:   247 QVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGP 306
             + D   S  P ++V+ L  +GYSVVN++C+DR KL+FD+VCTLTDM Y+VFHAAI + G 
Sbjct:   225 KFDIEKS--PIVSVQNLPKRGYSVVNLQCKDRMKLLFDVVCTLTDMAYIVFHAAIRTVGE 282

Query:   307 HASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLLSEVTRI 366
              A  E+Y+RH DG  + +E E++R+I+CL+AAI RR  +G+ LELC  DR GLL+EVTRI
Sbjct:   283 TAFLEFYVRHSDGHPVSSEPERQRLIQCLQAAIERRTVKGVRLELCTADRPGLLAEVTRI 342

Query:   367 LRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTMLFNVKKVPAS 426
             LRENGL++ RA +ST    A NVFYV DA+GN +D + I+++R++IG   L   +  P S
Sbjct:   343 LRENGLNIARAEISTKDSIARNVFYVTDANGNLIDPEIIKSIREKIGIDDLSVKEPFPIS 402

Query:   427 -RSAYKEPE 434
              R A ++ +
Sbjct:   403 CREAVEKEQ 411

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=ISS

TIGR_CMR|GSU_1820 GSU_1820 "protein-P-II uridylyltransferase, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 103 (41.3 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
 Identities = 28/91 (30%), Positives = 51/91 (56%)

Query:   324 TEGEKERVIKCLEAAIRRRVSEGLS-LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTV 382
             TE  K R    ++  I   VS   + +++   D+VGLL  +T  L + GL +  A +ST 
Sbjct:   806 TERPKPRFPSRVD--IDNEVSSDYTVIDIYTHDKVGLLYRITSTLTDLGLYIGIAKISTK 863

Query:   383 GEQAVNVFYVRDASGNPV-DMKTIEALRKEI 412
              +Q  +VFYV+D  G+ +  ++ +E +R+++
Sbjct:   864 VDQVADVFYVKDIFGHKITSVERLEEIREKL 894

GO:0006542 "glutamine biosynthetic process" evidence=ISS

GO:0008773 "[protein-PII

TAIR|locus:2057936 ACR10 "ACT domain repeats 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 5.2e-05, P = 5.2e-05
 Identities = 67/311 (21%), Positives = 134/311 (43%)

Query:    36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTI 95
             +V+ ++  +K G+  ++ ++L    L I +  +S+DG W   VF VI   GK  T    +
Sbjct:    21 SVITINCPDKTGLGCDLCRILLFFGLNIVRGDVSTDGKWCYLVFWVI---GKPNTRWNLL 77

Query:    96 DYIEKALGPKGHITAG-AKTWPS-KQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLR 153
                     P      G ++ + S  +     + D   ++L   DR GLL +++ VL  L 
Sbjct:    78 KMRLVEASPSFSWAFGISRCYLSDSESQPPKLPDLFLLKLACSDRTGLLYDVTEVLYKLE 137

Query:   154 FNVAAAEV-WTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKVA 212
              N+   ++  T + ++  + +V D  T   +G   R + + E L++ + G D   S  + 
Sbjct:   138 INIEKVKISTTPDGKVMDLFFVTD--TRELLGTVKRRNEVYEYLRDAI-G-DSMISYDIE 193

Query:   213 RTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVN 272
                  +        + +  F+  D  G   +      HT S    I V+      +++++
Sbjct:   194 LVGPEITACSTSSSVAETLFSS-DVSGEHSSGL----HTSS-NVSIAVDNSLSSAHTLIH 247

Query:   273 VKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD-GPHASQEYYIRHMDGC-ILDTEGEKER 330
             + C+D   L++DI+ T  D    + +   +   G +   + +I   DG  ILD+  +   
Sbjct:   248 ITCQDHKGLLYDIMRTFKDFNIQISYGRFTIKLGKNCEIDLFIVQSDGRKILDSS-KLNA 306

Query:   331 VIKCLEAAIRR 341
             +I  L A +++
Sbjct:   307 LITRLRAELQQ 317

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00014345001 SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_1, whole genome shotgun sequence); (447 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	456
cd04897	75	cd04897, ACT_ACR_3, ACT domain-containing protein	1e-42
cd04895	72	cd04895, ACT_ACR_1, ACT domain-containing protein	1e-38
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	2e-37
cd04925	74	cd04925, ACT_ACR_2, ACT domain-containing protein	1e-30
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	5e-26
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	3e-19
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	5e-16
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	8e-16
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	4e-13
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	3e-12
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	4e-11
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	2e-10
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	4e-10
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	9e-10
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	3e-09
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	4e-09
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	9e-09
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	2e-08
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	7e-08
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	1e-07
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	7e-07
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	7e-07
pfam01842	66	pfam01842, ACT, ACT domain	8e-07
pfam01842	66	pfam01842, ACT, ACT domain	2e-06
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	8e-06
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	9e-06
cd04925	74	cd04925, ACT_ACR_2, ACT domain-containing protein	3e-05
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	4e-05
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	5e-05
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	6e-05
pfam01842	66	pfam01842, ACT, ACT domain	6e-05
cd04895	72	cd04895, ACT_ACR_1, ACT domain-containing protein	7e-05
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	9e-05
PRK01759	854	PRK01759, glnD, PII uridylyl-transferase; Provisio	9e-05
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	1e-04
PRK04374	869	PRK04374, PRK04374, PII uridylyl-transferase; Prov	1e-04
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	2e-04
PRK03059	856	PRK03059, PRK03059, PII uridylyl-transferase; Prov	2e-04
PRK05007	884	PRK05007, PRK05007, PII uridylyl-transferase; Prov	5e-04
cd04876	71	cd04876, ACT_RelA-SpoT, ACT domain found C-termina	5e-04
PRK03059	856	PRK03059, PRK03059, PII uridylyl-transferase; Prov	0.001
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	0.002
pfam13291	77	pfam13291, ACT_4, ACT domain	0.003
cd04927	76	cd04927, ACT_ACR-like_2, Second ACT domain, of a n	0.003
cd04927	76	cd04927, ACT_ACR-like_2, Second ACT domain, of a n	0.003
PRK01759	854	PRK01759, glnD, PII uridylyl-transferase; Provisio	0.004
PRK05007	884	PRK05007, PRK05007, PII uridylyl-transferase; Prov	0.004

>gnl|CDD|153169 cd04897, ACT_ACR_3, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  144 bits (366), Expect = 1e-42
 Identities = 56/75 (74%), Positives = 62/75 (82%)

Query: 268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGE 327
           YSVV V+CRDR KL+FD+VCTLTDM YVVFHA I +DG  A QEYYIRH DG  L TEGE
Sbjct: 1   YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGE 60

Query: 328 KERVIKCLEAAIRRR 342
           ++RVIKCLEAAI RR
Sbjct: 61  RQRVIKCLEAAIERR 75

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75

>gnl|CDD|153167 cd04895, ACT_ACR_1, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  134 bits (338), Expect = 1e-38
 Identities = 54/72 (75%), Positives = 58/72 (80%)

Query: 35  CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKT 94
           CT+VKVDS  KPGILLE VQVL+DLDL ITKAYISSDGGWFMDVFHV DQ G K+TD   
Sbjct: 1   CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSL 60

Query: 95  IDYIEKALGPKG 106
           I YIEK+LG   
Sbjct: 61  IAYIEKSLGTSR 72

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  130 bits (330), Expect = 2e-37
 Identities = 50/72 (69%), Positives = 60/72 (83%)

Query: 346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTI 405
           G+ LEL  +DRVGLLS+VTR+ RENGL+VTRA +ST G+ AVNVFYV DA+GNPVD KTI
Sbjct: 1   GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTI 60

Query: 406 EALRKEIGHTML 417
           EA+R+EIG   L
Sbjct: 61  EAVRQEIGPACL 72

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153197 cd04925, ACT_ACR_2, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  112 bits (283), Expect = 1e-30
 Identities = 43/74 (58%), Positives = 54/74 (72%)

Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
           TAIEL G DRPGLLSE+ AVLA+L  NV  A  WTHN R+ACV+YV D+ T   + D  R
Sbjct: 1   TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIR 60

Query: 189 LSLMEEQLKNILRG 202
           L+ +E++L N+LRG
Sbjct: 61  LASIEDRLDNVLRG 74

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 74

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 99.8 bits (250), Expect = 5e-26
 Identities = 35/68 (51%), Positives = 49/68 (72%)

Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEAL 408
           LEL A DR GLL++VTR+L E GL++  A ++T+GE+A +VFYV DA G P+D +  EAL
Sbjct: 3   LELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEAL 62

Query: 409 RKEIGHTM 416
           R  +G  +
Sbjct: 63  RAALGEAL 70

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 81.1 bits (201), Expect = 3e-19
 Identities = 28/68 (41%), Positives = 47/68 (69%)

Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEAL 408
           +E+ A DR GLL+++TR+L + GL++  A +ST GE+A++VFYV D+ G P+D + I  L
Sbjct: 3   VEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARL 62

Query: 409 RKEIGHTM 416
            + +   +
Sbjct: 63  EEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 72.1 bits (178), Expect = 5e-16
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
           T +EL   DRPGLL++++ VLA L  N+ +A++ T   R   V YV D        D  R
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPL--DPER 58

Query: 189 LSLMEEQLKNIL 200
              +   L   L
Sbjct: 59  QEALRAALGEAL 70

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 71.4 bits (176), Expect = 8e-16
 Identities = 28/67 (41%), Positives = 45/67 (67%), Gaps = 1/67 (1%)

Query: 36  TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTI 95
           TVV+V + ++PG+L ++ +VL+DL L I  A IS+ G   +DVF+V D  G+ + D + I
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPL-DPERI 59

Query: 96  DYIEKAL 102
             +E+AL
Sbjct: 60  ARLEEAL 66

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 63.7 bits (156), Expect = 4e-13
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEK 328
           +VV V   DR  L+ DI   L D+   +  A IS+ G  A   +Y+   DG  LD E   
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPE-RI 59

Query: 329 ERVIKCLEAAI 339
            R+ + LE A+
Sbjct: 60  ARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 61.4 bits (150), Expect = 3e-12
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
           T +E+   DRPGLL++I+ VLA+L  N+  A + T   R   V YV D        D  R
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPL--DPER 58

Query: 189 LSLMEEQLKNIL 200
           ++ +EE L++ L
Sbjct: 59  IARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 64.9 bits (159), Expect = 4e-11
 Identities = 32/81 (39%), Positives = 52/81 (64%)

Query: 22  PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
           PPR ++DN +    TV++V+  ++PG+L ++ + LSDL+L I  A+I++ G   +DVF+V
Sbjct: 830 PPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYV 889

Query: 82  IDQQGKKITDGKTIDYIEKAL 102
            D  G KIT+      I +AL
Sbjct: 890 TDLFGLKITNEARQAAIRRAL 910

Length = 931

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 44/201 (21%), Positives = 71/201 (35%), Gaps = 42/201 (20%)

Query: 241 GVTTADQVDHTPSF-------KPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQ 293
             T  +   H  S         P   ++     G + V +   D+  L   +   L  M 
Sbjct: 634 RFTHKEIAWHAESLRRALSSGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGAL-AML 692

Query: 294 YVVFHAA--ISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAA------------I 339
            +  H A   ++    A   + ++ + G     E   + +++ L                
Sbjct: 693 SLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGLAKDPDTISA 752

Query: 340 RRRVSEGLS--------------------LELCAKDRVGLLSEVTRILRENGLSVTRAGV 379
           RR     L                     +E+ A DR GLL+ V R L E GLS+  A +
Sbjct: 753 RRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKI 812

Query: 380 STVGEQAVNVFYVRDASGNPV 400
           +T GE+A +VFYV D  G  +
Sbjct: 813 TTFGEKAEDVFYVTDLFGLKL 833

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 61.8 bits (151), Expect = 4e-10
 Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKT-IEA 407
           +E+  +DR GLL ++TR L +  L++  A ++T GE+AV+VFYV D  G  +  +    A
Sbjct: 846 IEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAA 905

Query: 408 LRKEIGHTMLFNVKKVPASRSA 429
           +R+ +   +     +  A+R  
Sbjct: 906 IRRALLAALAEGEAEARAARPP 927

Length = 931

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 60.7 bits (148), Expect = 9e-10
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 23/166 (13%)

Query: 67  YISSDGGWFMDVFHVIDQQGKKITDGKTI----DYIEKALGPKGHITA----GAKTWPSK 118
           + ++DG   +D F + D  G+   + + +      IE AL   G +        +T P K
Sbjct: 766 FTTTDG-RALDTFWIQDAFGRDEDEPRRLARLAKAIEDAL--SGEVRLPEALAKRTKPKK 822

Query: 119 QVGVHSV-----------GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRR 167
           +     V              T IE+ GRDRPGLL +++  L++L  N+A+A + T+  R
Sbjct: 823 RARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGER 882

Query: 168 IACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKVAR 213
              V YV  D     + ++ R + +   L   L   + E       
Sbjct: 883 AVDVFYVT-DLFGLKITNEARQAAIRRALLAALAEGEAEARAARPP 927

Length = 931

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 59.0 bits (143), Expect = 3e-09
 Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 18/149 (12%)

Query: 46  PGILLEVVQVLSDLDLIITKAYI-SSDGGWFMDVFHVIDQQGKKITDGKT----IDYIEK 100
           PG+  +V   L+ L L +  A + ++  G  +D F V D  G      +     +  +  
Sbjct: 679 PGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVD 738

Query: 101 ALGPKGHITAGAKTWPSKQVGV-------------HSVGDHTAIELIGRDRPGLLSEISA 147
            L              +++  +              +    T +E+   DRPGLL+ +  
Sbjct: 739 VLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGR 798

Query: 148 VLANLRFNVAAAEVWTHNRRIACVLYVND 176
            L  L  ++ +A++ T   +   V YV D
Sbjct: 799 TLEELGLSIQSAKITTFGEKAEDVFYVTD 827

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 58.8 bits (143), Expect = 4e-09
 Identities = 24/52 (46%), Positives = 33/52 (63%)

Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPV 400
           LE+ A DR GLL+ + R L   G+ V  A V+T+G   V+VFYV  A+G P+
Sbjct: 710 LEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPL 761

Length = 774

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 57.4 bits (139), Expect = 9e-09
 Identities = 24/77 (31%), Positives = 44/77 (57%)

Query: 345 EGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKT 404
           +   LE+ A DR GLL+ +  +  + GLS+  A ++T GE+  +VF V DA G  ++ + 
Sbjct: 790 DKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALNAEL 849

Query: 405 IEALRKEIGHTMLFNVK 421
            ++L + +   +L N +
Sbjct: 850 RQSLLQRLLEALLPNDE 866

Length = 867

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 50.9 bits (123), Expect = 2e-08
 Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 36  TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTI 95
           TV+++ ++++PG+L +V +VL++L L I  A I++ G    DVF+V D  G+   D +  
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQP-LDPERQ 59

Query: 96  DYIEKALG 103
           + +  ALG
Sbjct: 60  EALRAALG 67

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 54.7 bits (132), Expect = 7e-08
 Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPV-DMKTIEA 407
           LE+ A DR GLL+ + RI  E  LS+  A ++T+GE+  +VF++ DA   P+ D +    
Sbjct: 817 LEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSR 876

Query: 408 LRKEI 412
           L+  I
Sbjct: 877 LQDAI 881

Length = 895

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 26/71 (36%), Positives = 45/71 (63%)

Query: 22  PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
           PPR ++ N++  + T+++V ++++PG+L  V + L +L L I  A I++ G    DVF+V
Sbjct: 766 PPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYV 825

Query: 82  IDQQGKKITDG 92
            D  G K+TD 
Sbjct: 826 TDLFGLKLTDE 836

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 44  NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALG 103
           ++ G+L +V +V  +  L +T+A IS+ G   ++VF+V D  G  + D KTI+ + + +G
Sbjct: 10  DRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIG 68

Query: 104 P 104
           P
Sbjct: 69  P 69

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 51.2 bits (123), Expect = 7e-07
 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGD 185
            D T +E+   DRPGLL+ ++ V A+L  ++ +A++ T   R+  V  V  D   +A+  
Sbjct: 789 NDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIV-TDADGQALNA 847

Query: 186 QTRLSLMEEQLKNIL 200
           + R SL++  L+ +L
Sbjct: 848 ELRQSLLQRLLEALL 862

Length = 867

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 45.8 bits (109), Expect = 8e-07
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 348 SLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEA 407
            LE+   DR GLL+EV   L + G+++     ST G++A  VF V       ++   +EA
Sbjct: 2   VLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEEDLE-AALEA 60

Query: 408 LRKEIG 413
           L+K +G
Sbjct: 61  LKKLLG 66

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
           T +E+   DRPGLL+E+   LA+   N+ +    T   +               V D+  
Sbjct: 1   TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKA-------GIVFIVVVVDEED 53

Query: 189 LSLMEEQLKNILR 201
           L    E LK +L 
Sbjct: 54  LEAALEALKKLLG 66

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 17/142 (11%)

Query: 52  VVQVLSDLDLIITKAYI-SSDGGWFMDVFHVIDQQGKKI-TDGKTIDYIEKALG-----P 104
            V  +  L+L I  A I +S   + +D + V+D  G+ I  +   I+ I + L      P
Sbjct: 721 TVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNP 780

Query: 105 KGHITAGAKTWPSK--------QVGVHS--VGDHTAIELIGRDRPGLLSEISAVLANLRF 154
             + T   +  P +        QV + +      T +E+I  DRPGLL+ I  +      
Sbjct: 781 DDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDL 840

Query: 155 NVAAAEVWTHNRRIACVLYVND 176
           ++  A++ T   R+  V ++ D
Sbjct: 841 SLQNAKIATLGERVEDVFFITD 862

Length = 895

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 43.2 bits (103), Expect = 9e-06
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 44  NKPGILLEVVQVLSDLDLIITKAYI-SSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKAL 102
           ++PG+   +   L  L L I  A I ++  G+ +D F V+D  G+ I + + +  I +AL
Sbjct: 10  DRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREAL 69

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|153197 cd04925, ACT_ACR_2, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 348 SLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRD-ASGNPVD----M 402
           ++EL   DR GLLSEV  +L +   +V  A   T   +   V YVRD  +G P+D    +
Sbjct: 2   AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRL 61

Query: 403 KTIEAL 408
            +IE  
Sbjct: 62  ASIEDR 67

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 74

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 22/70 (31%), Positives = 41/70 (58%)

Query: 22  PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
           PPR ++  ++  + TV++V ++++PG+L  +  V +DL L +  A I++ G    DVF V
Sbjct: 778 PPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIV 837

Query: 82  IDQQGKKITD 91
            D  G+ +  
Sbjct: 838 TDADGQALNA 847

Length = 867

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEAL 408
           L +   DR GLL++V  +L E G+++T     T G+      ++    G+    K +EAL
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFI-VVDGDGDLEKLLEAL 59

Query: 409 R 409
            
Sbjct: 60  E 60

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 45.4 bits (108), Expect = 6e-05
 Identities = 17/70 (24%), Positives = 39/70 (55%)

Query: 22  PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
           P + ++ N +    TV+++ + ++PG+L  + ++  + DL +  A I++ G    DVF +
Sbjct: 801 PTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFI 860

Query: 82  IDQQGKKITD 91
            D   + ++D
Sbjct: 861 TDADNQPLSD 870

Length = 895

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDG--GWFMDVFHVIDQQG 86
          TV++V   ++PG+L EV   L+D  + I     S+ G     + +  V+D++ 
Sbjct: 1  TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEED 53

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|153167 cd04895, ACT_ACR_1, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 358 GLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPV-DMKTIEALRKEIG 413
           G+L E  ++L +  L +T+A +S+ G   ++VF+V D  GN + D   I  + K +G
Sbjct: 13  GILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 40.0 bits (94), Expect = 9e-05
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDG-GWFMDVFHVIDQQG 86
          + V   ++PG+L +V+ VL++  + IT     + G G   D+F V+D  G
Sbjct: 1  LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDG 50

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|234980 PRK01759, glnD, PII uridylyl-transferase; Provisional

 Score = 44.7 bits (106), Expect = 9e-05
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 40/174 (22%)

Query: 273 VKCRDRAKLMFDIVCTLTDMQYVVFHAAI--SSDGPHASQEYYIRHMDGCILDTEGEKER 330
           + C+D+A L   +V T+   +  +  A I  S DG +    + +  ++G +L+ +  ++ 
Sbjct: 682 IYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDG-YVLDSFIVTELNGKLLEFDRRRQ- 739

Query: 331 VIKCLEAAI----------RRRVSEGLSL----------------------ELCAKDRVG 358
               LE A+          +  + E   L                      EL A DR G
Sbjct: 740 ----LEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAG 795

Query: 359 LLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEI 412
           LL++V+++  E  L++  A ++T+GE+A + F + +  G  +D +  +AL+  +
Sbjct: 796 LLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEERKALKSRL 849

Length = 854

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNR 166
           + + G DRPGLL+++ +VLA    N+ + E  T   
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGD 36

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|179839 PRK04374, PRK04374, PII uridylyl-transferase; Provisional

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEAL 408
           + L A DR GLL++V  +LR   L V  A ++T GE+A + F + D    P+     +AL
Sbjct: 799 ISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESARQAL 858

Query: 409 R 409
           R
Sbjct: 859 R 859

Length = 869

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 40/204 (19%), Positives = 84/204 (41%), Gaps = 30/204 (14%)

Query: 137 DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQL 196
           D+PGL ++++  LA L  +V  A+V T    +A   +V  D        +     + + L
Sbjct: 677 DQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGL 736

Query: 197 KNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKP 256
            ++L G   +     AR +                               ++ H  +  P
Sbjct: 737 VDVLAGLAKDPDTISARRA----------------------------RRRRLQHF-AVPP 767

Query: 257 EITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRH 316
            +T+     +  +++ V+  DR  L+  +  TL ++   +  A I++ G  A   +Y+  
Sbjct: 768 RVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTD 827

Query: 317 MDGCILDTEGEKERVIKCLEAAIR 340
           + G  L T+ E++R+++ L A++ 
Sbjct: 828 LFGLKL-TDEEEQRLLEVLAASVA 850

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|235101 PRK03059, PRK03059, PII uridylyl-transferase; Provisional

 Score = 43.7 bits (104), Expect = 2e-04
 Identities = 17/47 (36%), Positives = 29/47 (61%)

Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDA 395
           L + A DR GLL  + R+L E+ +SV  A ++T+GE+  + F +  +
Sbjct: 789 LSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGS 835

Length = 856

>gnl|CDD|235329 PRK05007, PRK05007, PII uridylyl-transferase; Provisional

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 35/187 (18%)

Query: 255 KPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA---ISSDGPHASQE 311
           KP + + +   +G + + +   DR  L F  VC   D + +  H A    S DG  A   
Sbjct: 688 KPLVLLSKQATRGGTEIFIWSPDRPYL-FAAVCAELDRRNLSVHDAQIFTSRDG-MAMDT 745

Query: 312 YYIRHMDGCILDTEGEKERVIKCLEAAIR---------RRVSEGLS-------------- 348
           + +   DG  L  +   + + K LE A+          RR+   L               
Sbjct: 746 FIVLEPDGSPLS-QDRHQVIRKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTH 804

Query: 349 ------LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDM 402
                 +EL A D+ GLL+ V +I  + G+S+  A ++T+GE+  ++F +  A    ++ 
Sbjct: 805 TDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNE 864

Query: 403 KTIEALR 409
           +  + LR
Sbjct: 865 ELQQELR 871

Length = 884

>gnl|CDD|153148 cd04876, ACT_RelA-SpoT, ACT domain found C-terminal of the RelA/SpoT domains

 Score = 38.2 bits (90), Expect = 5e-04
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIA 169
           I +   DRPGLL++I+ V+A  + N+ +    T +  +A
Sbjct: 1   IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLA 39

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes in E. coli, a bifunctional Rel/Spo protein has been discovered in most gram-positive organisms studied so far. These bifunctional Rel/Spo homologs (rsh) appear to modulate (p)ppGpp levels through two distinct active sites that are controlled by a reciprocal regulatory mechanism ensuring inverse coupling of opposing activities. In studies with the Streptococcus equisimilis Rel/Spo homolog, the C-terminal domain appears to be involved in this reciprocal regulation of the two opposing catalytic activities present in the N-terminal domain, ensuring that both synthesis and degradation activities are not coinduced. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71

>gnl|CDD|235101 PRK03059, PRK03059, PII uridylyl-transferase; Provisional

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 16/106 (15%)

Query: 73  GWFMDVFHVIDQQGKKITDGKTIDYIE----KALGPKGHITAGAKTWPSKQVGVHSV--- 125
           G+ +D F V+D   + +     I+ +E    + L  +  +   +K   S+QV    +   
Sbjct: 717 GYALDTFQVLDP-EEDVHYRDIINLVEHELAERLAEQAPLPEPSKGRLSRQVKHFPITPR 775

Query: 126 --------GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT 163
                   G +  + +   DRPGLL  I+ VLA  R +V  A++ T
Sbjct: 776 VDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINT 821

Length = 856

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 338 AIRRRVSEGLSLEL--CAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDA 395
            +    ++   +E+   A DR GLLS+   +L  + L V  A V +    AV  F V   
Sbjct: 589 HVEIAPADPHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPR 648

Query: 396 SGNPVDMKTIEA 407
            G+P D   +  
Sbjct: 649 FGSPPDAALLRQ 660

Length = 774

>gnl|CDD|222030 pfam13291, ACT_4, ACT domain

 Score = 36.3 bits (85), Expect = 0.003
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACV---LYVND 176
             +E+   DRPGLL++I+ V++N + N+ +    + +  IA +   L V D
Sbjct: 5   ADLEIEAIDRPGLLADITTVISNEKANILSVNAESKDNGIATINLTLEVKD 55

ACT domains bind to amino acids and regulate associated enzyme domains. These ACT domains are found at the C-terminus of the RelA protein. Length = 77

>gnl|CDD|153199 cd04927, ACT_ACR-like_2, Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 35.9 bits (83), Expect = 0.003
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAV-NVFYVRDA 395
           L+L   DR GLL +VT +L E  L++ R  VST  +  V ++F++ DA
Sbjct: 3   LKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA 50

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 76

>gnl|CDD|153199 cd04927, ACT_ACR-like_2, Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 35.9 bits (83), Expect = 0.003
 Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 37  VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-GGWFMDVFHVIDQQ---GKKITDG 92
           ++K+   ++ G+L +V +VL +L+L I +  +S+   G  +D+F + D +     K    
Sbjct: 2   LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRRE 61

Query: 93  KTIDYIEKALGPKG 106
           +T DY+   LG   
Sbjct: 62  ETYDYLRAVLGDSM 75

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 76

>gnl|CDD|234980 PRK01759, glnD, PII uridylyl-transferase; Provisional

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 25/139 (17%)

Query: 44  NKPGILLEVVQVLSDLDLIITKAYI-SSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKAL 102
           ++  + L+VV  +    L I  A I +S  G+ +D F V +  GK +   +    +E+AL
Sbjct: 686 DQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRR-RQLEQAL 744

Query: 103 GPKGHITAGAKTWPSKQVGVH------------------SVGDHTAIELIGRDRPGLLSE 144
                  A       K                          + T +EL   DR GLL++
Sbjct: 745 -----TKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQ 799

Query: 145 ISAVLANLRFNVAAAEVWT 163
           +S V + L  N+  A++ T
Sbjct: 800 VSQVFSELNLNLLNAKITT 818

Length = 854

>gnl|CDD|235329 PRK05007, PRK05007, PII uridylyl-transferase; Provisional

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 16/137 (11%)

Query: 42  SVNKPGILLEVVQVLSDLDLIITKAYI-SSDGGWFMDVFHVIDQQGKKITDGK---TIDY 97
           S ++P +   V   L   +L +  A I +S  G  MD F V++  G  ++  +       
Sbjct: 708 SPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKA 767

Query: 98  IEKALGPKGHITAGAKTWPSK--------QVG---VHSVGDHTAIELIGRDRPGLLSEIS 146
           +E+AL          +  P+K        +V     H+    + +ELI  D+PGLL+ + 
Sbjct: 768 LEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDR-RSYMELIALDQPGLLARVG 826

Query: 147 AVLANLRFNVAAAEVWT 163
            + A+L  ++  A + T
Sbjct: 827 KIFADLGISLHGARITT 843

Length = 884

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	456
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.97
PRK05007	884	PII uridylyl-transferase; Provisional	99.97
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.97
PRK04374	869	PII uridylyl-transferase; Provisional	99.96
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.96
PRK03059	856	PII uridylyl-transferase; Provisional	99.96
PRK05092	931	PII uridylyl-transferase; Provisional	99.95
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.95
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.94
PRK05007	884	PII uridylyl-transferase; Provisional	99.94
PRK03381	774	PII uridylyl-transferase; Provisional	99.92
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.92
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.91
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.9
PRK04374	869	PII uridylyl-transferase; Provisional	99.9
PRK05092	931	PII uridylyl-transferase; Provisional	99.89
PRK03381	774	PII uridylyl-transferase; Provisional	99.88
PRK03059	856	PII uridylyl-transferase; Provisional	99.88
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.79
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.78
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.74
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.74
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.71
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.69
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.67
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.61
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.6
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.52
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.51
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.5
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.5
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.49
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.49
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.42
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.4
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.32
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.27
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.25
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.22
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.19
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.19
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.18
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.87
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.86
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.82
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.76
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.64
COG4747	142	ACT domain-containing protein [General function pr	98.58
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.54
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.5
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.41
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.36
COG4747	142	ACT domain-containing protein [General function pr	98.35
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.34
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.28
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.21
PRK07431	587	aspartate kinase; Provisional	98.13
PRK00194	90	hypothetical protein; Validated	98.12
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.07
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.07
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	98.04
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.02
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.01
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.94
PRK00194	90	hypothetical protein; Validated	97.91
COG3830	90	ACT domain-containing protein [Signal transduction	97.86
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.77
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	97.74
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.71
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.71
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.7
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.67
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.66
COG3830	90	ACT domain-containing protein [Signal transduction	97.64
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.56
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.52
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.45
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.44
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.37
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	97.36
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	97.16
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.14
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.13
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	97.1
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.09
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.04
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	97.02
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	97.01
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	97.0
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	96.99
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.98
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	96.98
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.97
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.97
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.95
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	96.94
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.91
PRK07431	587	aspartate kinase; Provisional	96.87
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.85
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	96.8
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	96.8
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.75
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.74
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.72
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.72
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.72
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.69
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.62
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.61
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.57
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.48
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.46
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.44
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.42
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.4
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.36
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.33
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.27
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.26
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	96.2
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.16
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	96.13
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.13
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.12
PRK08577	136	hypothetical protein; Provisional	96.09
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	96.05
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.02
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.0
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	95.95
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.91
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	95.88
PRK08577	136	hypothetical protein; Provisional	95.88
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	95.87
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	95.83
cd02116	60	ACT ACT domains are commonly involved in specifica	95.8
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	95.78
PRK04435	147	hypothetical protein; Provisional	95.77
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	95.76
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	95.73
PRK11899	279	prephenate dehydratase; Provisional	95.72
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	95.71
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	95.6
cd02116	60	ACT ACT domains are commonly involved in specifica	95.55
PRK04435	147	hypothetical protein; Provisional	95.43
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.38
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	95.25
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.2
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	95.19
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.1
PRK07334	403	threonine dehydratase; Provisional	95.01
PRK07334	403	threonine dehydratase; Provisional	94.82
PRK06291	465	aspartate kinase; Provisional	94.34
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	94.16
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	94.14
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	94.14
PRK06635	404	aspartate kinase; Reviewed	94.12
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	93.95
PRK06635	404	aspartate kinase; Reviewed	93.94
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	93.81
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	93.77
PRK08210	403	aspartate kinase I; Reviewed	93.77
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	93.45
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	93.26
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	93.13
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	92.76
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	92.75
PRK08210	403	aspartate kinase I; Reviewed	92.66
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	92.58
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	92.39
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	92.18
COG1707	218	ACT domain-containing protein [General function pr	92.06
PRK06291	465	aspartate kinase; Provisional	92.05
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	91.94
PRK09034	454	aspartate kinase; Reviewed	91.88
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	91.79
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	91.51
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	91.5
COG1707	218	ACT domain-containing protein [General function pr	91.3
PRK09034	454	aspartate kinase; Reviewed	91.27
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	91.14
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	90.78
PRK11899	279	prephenate dehydratase; Provisional	90.61
PRK06382	406	threonine dehydratase; Provisional	90.45
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	90.45
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	90.33
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	90.22
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	90.08
PLN02317	382	arogenate dehydratase	89.93
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	89.88
PRK08818	370	prephenate dehydrogenase; Provisional	89.83
PRK06545	359	prephenate dehydrogenase; Validated	89.66
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	89.33
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	88.94
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	88.8
PRK06545	359	prephenate dehydrogenase; Validated	88.79
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	88.74
PLN02551	521	aspartokinase	88.71
PRK09181	475	aspartate kinase; Validated	88.66
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	88.61
PRK06349	426	homoserine dehydrogenase; Provisional	88.5
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	87.95
PRK06382	406	threonine dehydratase; Provisional	87.94
COG2150	167	Predicted regulator of amino acid metabolism, cont	87.82
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	87.8
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	87.64
PRK08198	404	threonine dehydratase; Provisional	87.09
PF05088	1528	Bac_GDH: Bacterial NAD-glutamate dehydrogenase	87.04
PRK08818	370	prephenate dehydrogenase; Provisional	87.0
PRK14630	143	hypothetical protein; Provisional	86.55
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	86.41
PRK09181	475	aspartate kinase; Validated	86.22
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	86.2
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	86.18
PRK12483	521	threonine dehydratase; Reviewed	86.12
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	86.06
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	84.68
PLN02551	521	aspartokinase	84.62
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	84.6
PRK09224	504	threonine dehydratase; Reviewed	84.6
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	84.5
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	83.91
cd04919	66	ACT_AK-Hom3_2 ACT domains located C-terminal to th	83.9
PLN02550	591	threonine dehydratase	83.89
PRK06349	426	homoserine dehydrogenase; Provisional	83.82
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	83.62
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	83.34
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	83.15
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	83.14
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	82.8
PRK12483	521	threonine dehydratase; Reviewed	82.66
PRK11898	283	prephenate dehydratase; Provisional	82.29
cd04924	66	ACT_AK-Arch_2 ACT domains of a monofunctional aspa	81.02
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	80.88
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	80.65
COG3283	511	TyrR Transcriptional regulator of aromatic amino a	80.55
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	80.31
PRK09084	448	aspartate kinase III; Validated	80.09

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.97  E-value=4.6e-30  Score=286.15  Aligned_cols=198  Identities=20%  Similarity=0.277  Sum_probs=167.7

Q ss_pred             CCCCCCCCCChH----HHHHHhhc-CCCEEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE-eCCE
Q 012814            1 MANAYWPYFDPE----YESLSLRI-NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGW   74 (456)
Q Consensus         1 ~~~~Y~~~~~~~----~~~~~~~~-~~p~V~v~~~~~~~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~~g~   74 (456)
                      |+++||.+++|+    |++++... .+|.|.++++++.++++|+|+++||||||++|+++|+.+|+||++|+|+| .+|+
T Consensus       638 ~~~~yf~~~~~~~I~~h~~~~~~~~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~  717 (854)
T PRK01759        638 CPEDYFLRNTPKQIAWHALLLLDFRGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGY  717 (854)
T ss_pred             CCcHHhcCCCHHHHHHHHHHHHhcCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCE
Confidence            689999999999    77777654 57888899999999999999999999999999999999999999999998 8999


Q ss_pred             EEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCC----CC---------cccCCcccccccCCCceEEEEEEeCCcccH
Q 012814           75 FMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHIT----AG---------AKTWPSKQVGVHSVGDHTAIELIGRDRPGL  141 (456)
Q Consensus        75 ~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~----~~---------~~~~~~~~v~~~~~~~~t~i~v~~~DrpGL  141 (456)
                      ++|+|+|++++|.++. +..++.|++.|...+...    ..         +..++++.++++.+..+|+|+|.+.|||||
T Consensus       718 alD~F~V~d~~g~~~~-~~~~~~l~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGL  796 (854)
T PRK01759        718 VLDSFIVTELNGKLLE-FDRRRQLEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGL  796 (854)
T ss_pred             EEEEEEEeCCCCCCCC-HHHHHHHHHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHH
Confidence            9999999999998875 345555555444332211    10         112334456667888999999999999999


Q ss_pred             HHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhc
Q 012814          142 LSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR  201 (456)
Q Consensus       142 L~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~  201 (456)
                      ||+|+++|.++|++|+.|+|+|.|+++.|+|||++ ..|.++.++++ +.|+++|.++|+
T Consensus       797 L~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~-~~g~~l~~~~~-~~l~~~L~~~l~  854 (854)
T PRK01759        797 LAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTN-QQGQALDEEER-KALKSRLLSNLS  854 (854)
T ss_pred             HHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHhC
Confidence            99999999999999999999999999999999999 58999987666 999999998874

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.97  E-value=1.3e-29  Score=283.55  Aligned_cols=199  Identities=19%  Similarity=0.271  Sum_probs=168.6

Q ss_pred             CCCCCCCCCChH----HHHHHhhc--CCCEEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE-eCC
Q 012814            1 MANAYWPYFDPE----YESLSLRI--NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGG   73 (456)
Q Consensus         1 ~~~~Y~~~~~~~----~~~~~~~~--~~p~V~v~~~~~~~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~~g   73 (456)
                      |+++||.+++|+    |.+++...  .+|.|.++++++.++++|+|+++|+||||++||++|+.+|+||++|+|+| .+|
T Consensus       661 ~~~~yf~~~~~~~I~~h~~~~~~~~~~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg  740 (884)
T PRK05007        661 CRADYFLRHTPNQLAWHARHLLQHDLDKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDG  740 (884)
T ss_pred             CChHHhcCCCHHHHHHHHHHHHhccCCCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCC
Confidence            689999999999    88888765  57889999999999999999999999999999999999999999999998 678


Q ss_pred             EEEEEEEEEeCCCCCCCChhHHH----HHHHHHCCCCCCCC-C---------cccCCcccccccCCCceEEEEEEeCCcc
Q 012814           74 WFMDVFHVIDQQGKKITDGKTID----YIEKALGPKGHITA-G---------AKTWPSKQVGVHSVGDHTAIELIGRDRP  139 (456)
Q Consensus        74 ~~~d~f~V~~~~g~~~~~~~~~~----~L~~~L~~~l~~~~-~---------~~~~~~~~v~~~~~~~~t~i~v~~~Drp  139 (456)
                      +++|+|+|++++|.++++ +.++    .|+++|.+...... .         +..++++.++++.+..+|+|+|.+.|||
T Consensus       741 ~alD~F~V~d~~g~~~~~-~~~~~I~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRp  819 (884)
T PRK05007        741 MAMDTFIVLEPDGSPLSQ-DRHQVIRKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQP  819 (884)
T ss_pred             eEEEEEEEECCCCCCCCH-HHHHHHHHHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCch
Confidence            999999999999988743 3444    44555544321110 0         1112344556678889999999999999


Q ss_pred             cHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhcC
Q 012814          140 GLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG  202 (456)
Q Consensus       140 GLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~~  202 (456)
                      ||||+|+++|.++|++|++|+|+|.|+++.|+|||++ ..|.++. +++.+.|+++|.++|..
T Consensus       820 GLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~-~~g~~l~-~~~~~~l~~~L~~~l~~  880 (884)
T PRK05007        820 GLLARVGKIFADLGISLHGARITTIGERVEDLFILAT-ADRRALN-EELQQELRQRLTEALNP  880 (884)
T ss_pred             HHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEc-CCCCcCC-HHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999 5888987 67889999999999865

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.97  E-value=5.5e-29  Score=278.47  Aligned_cols=202  Identities=18%  Similarity=0.288  Sum_probs=168.1

Q ss_pred             CCCCCCCCCChH----HHHHHhhc---CCCEEEEecCCC---CCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE
Q 012814            1 MANAYWPYFDPE----YESLSLRI---NPPRASVDNSSC---PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS   70 (456)
Q Consensus         1 ~~~~Y~~~~~~~----~~~~~~~~---~~p~V~v~~~~~---~~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t   70 (456)
                      |+++||.+++|+    |++++...   ++|.|.+.+.+.   .+.++|+|+++||||||+++|++|+.+|+||++|+|+|
T Consensus       660 ~~~~Y~l~~~~~~I~~h~~~~~~~~~~~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~T  739 (895)
T PRK00275        660 LGDDYFLRHTAGDIAWHTEAILQHPDDGGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIIT  739 (895)
T ss_pred             CCcHHhcCCCHHHHHHHHHHHHhcccCCCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEE
Confidence            789999999999    88888764   467777877765   58999999999999999999999999999999999986


Q ss_pred             -eCCEEEEEEEEEeCCCCCCC-ChhHHHHHHHHHCCCCCCC----C--Cc---------ccCCcccccccCCCceEEEEE
Q 012814           71 -DGGWFMDVFHVIDQQGKKIT-DGKTIDYIEKALGPKGHIT----A--GA---------KTWPSKQVGVHSVGDHTAIEL  133 (456)
Q Consensus        71 -~~g~~~d~f~V~~~~g~~~~-~~~~~~~L~~~L~~~l~~~----~--~~---------~~~~~~~v~~~~~~~~t~i~v  133 (456)
                       .+|+++|+|+|++++|.++. ++.++++|++.|...+...    .  ..         ..++.+.+.++++..+|+|+|
T Consensus       740 t~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V  819 (895)
T PRK00275        740 SSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEI  819 (895)
T ss_pred             cCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEE
Confidence             78999999999999998753 3355555555544332211    1  00         112233345567788999999


Q ss_pred             EeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhcCC
Q 012814          134 IGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGC  203 (456)
Q Consensus       134 ~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~~~  203 (456)
                      .+.||||||++|+++|+.+|+||++|+|+|.|+++.|+|||++ .+|.++.+++++++|+++|.++|...
T Consensus       820 ~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d-~~g~~l~~~~~~~~l~~~L~~~L~~~  888 (895)
T PRK00275        820 IAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITD-ADNQPLSDPQLCSRLQDAICEQLDAR  888 (895)
T ss_pred             EECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999 58999988889999999999999764

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=1.3e-27  Score=265.93  Aligned_cols=199  Identities=21%  Similarity=0.276  Sum_probs=162.2

Q ss_pred             CCCCCCCCCChH----HHHHHhhc--CCCEEEEec-CCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE-eC
Q 012814            1 MANAYWPYFDPE----YESLSLRI--NPPRASVDN-SSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DG   72 (456)
Q Consensus         1 ~~~~Y~~~~~~~----~~~~~~~~--~~p~V~v~~-~~~~~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~~   72 (456)
                      |+++||.+++++    |++++..+  +.|.|.+.. .+..+.++|+|+++|+||||++||++|+.+|+||++|+|+| .+
T Consensus       649 l~~~Y~~~~~~~~I~~h~~~~~~~~~~~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~  728 (869)
T PRK04374        649 MPDENFLRFRPEQLAWQAASLIEVEIGQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPH  728 (869)
T ss_pred             CCchhhcCCCHHHHHHHHHHHHhcCCCCCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCC
Confidence            789999999999    88888764  456666554 67779999999999999999999999999999999999997 89


Q ss_pred             CEEEEEEEEEeCCCCCCCC-hhHHHHHHHHHCCCCCCCC-Cc----------ccCCcccccccCCCceEEEEEEeCCccc
Q 012814           73 GWFMDVFHVIDQQGKKITD-GKTIDYIEKALGPKGHITA-GA----------KTWPSKQVGVHSVGDHTAIELIGRDRPG  140 (456)
Q Consensus        73 g~~~d~f~V~~~~g~~~~~-~~~~~~L~~~L~~~l~~~~-~~----------~~~~~~~v~~~~~~~~t~i~v~~~DrpG  140 (456)
                      |+++|+|+|++++|..... ....+.|+++|.+...... ..          ..++++.+.++++.++|+|+|.+.||||
T Consensus       729 g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpG  808 (869)
T PRK04374        729 DAIFDVFEVLPQDTYADGDPQRLAAALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPG  808 (869)
T ss_pred             CEEEEEEEEeCCCCCChHHHHHHHHHHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCc
Confidence            9999999999988864211 1345555666665322111 01          1123334455677889999999999999


Q ss_pred             HHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhc
Q 012814          141 LLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR  201 (456)
Q Consensus       141 LL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~  201 (456)
                      ||++|+++|+.+|+||+.|+|+|.|+++.|+|||++ .+|.++.++++ +.|+++|.++|.
T Consensus       809 LLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d-~~g~~~~~~~~-~~l~~~L~~~l~  867 (869)
T PRK04374        809 LLADVAHVLRMQHLRVHDARIATFGERAEDQFQITD-EHDRPLSESAR-QALRDALCACLD  867 (869)
T ss_pred             HHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHhc
Confidence            999999999999999999999999999999999999 47888877666 999999998885

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.96  E-value=1.3e-27  Score=267.92  Aligned_cols=198  Identities=22%  Similarity=0.273  Sum_probs=167.3

Q ss_pred             CCCCCCCCCChH----HHHHHhhc---CCCEEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEE-EeC
Q 012814            1 MANAYWPYFDPE----YESLSLRI---NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS-SDG   72 (456)
Q Consensus         1 ~~~~Y~~~~~~~----~~~~~~~~---~~p~V~v~~~~~~~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~-t~~   72 (456)
                      |+++||.+++|+    |++++..+   ++|.|.+++....+.++|+|+++||||||++||++|+.+|+||++|+|+ |.+
T Consensus       627 ~~~~y~~~~~~~~I~~h~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~  706 (850)
T TIGR01693       627 AYDDYFLRFTHKEIAWHAESLRRALSSGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKD  706 (850)
T ss_pred             CCchhhcCCCHHHHHHHHHHHHhcccCCCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecC
Confidence            789999999999    88888764   4788988887778999999999999999999999999999999999999 589


Q ss_pred             CEEEEEEEEEeCCCCCCCChhHHHHHH----HHHCCCCCCCC--Cc-----------ccCCcccccccCCCceEEEEEEe
Q 012814           73 GWFMDVFHVIDQQGKKITDGKTIDYIE----KALGPKGHITA--GA-----------KTWPSKQVGVHSVGDHTAIELIG  135 (456)
Q Consensus        73 g~~~d~f~V~~~~g~~~~~~~~~~~L~----~~L~~~l~~~~--~~-----------~~~~~~~v~~~~~~~~t~i~v~~  135 (456)
                      |+++|+|+|++.+|.++.+++.++.|+    ++|.+....+.  ..           ..++++.++++.+..+|+|+|.|
T Consensus       707 g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~  786 (850)
T TIGR01693       707 GVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRA  786 (850)
T ss_pred             CEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEE
Confidence            999999999999998877765555554    45544321111  00           11233445667788999999999


Q ss_pred             CCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHh
Q 012814          136 RDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (456)
Q Consensus       136 ~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L  200 (456)
                      .||||||++|+++|+++|+||++|+|.|.|+++.|+|++++ ..|.|+.+ ++++.|+++|.++|
T Consensus       787 ~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~-~~g~~~~~-~~~~~l~~~L~~~l  849 (850)
T TIGR01693       787 LDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTD-LFGLKLTD-EEEQRLLEVLAASV  849 (850)
T ss_pred             CCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEEC-CCCCCCCH-HHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999 58999987 78899999998876

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=1.4e-27  Score=266.05  Aligned_cols=196  Identities=20%  Similarity=0.323  Sum_probs=160.2

Q ss_pred             CCCCCCCCCChH----HHHHHhhc---CCCEEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE-eC
Q 012814            1 MANAYWPYFDPE----YESLSLRI---NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DG   72 (456)
Q Consensus         1 ~~~~Y~~~~~~~----~~~~~~~~---~~p~V~v~~~~~~~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~~   72 (456)
                      |+++||.+++|+    |++++...   ++|.|.+.+.+..+.++|+|+++||||||++||++|+.+|+||++|+|+| .+
T Consensus       637 ~~~~Yf~~~~~~~I~~h~~~~~~~~~~~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~  716 (856)
T PRK03059        637 LDVGYFLRHDAADIAWHTRHLYRHVDTDTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRH  716 (856)
T ss_pred             CChHHhccCCHHHHHHHHHHHHhcccCCCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCC
Confidence            689999999999    88888764   46888888888889999999999999999999999999999999999986 89


Q ss_pred             CEEEEEEEEEeCCCCCCCChhHHHHHHHH----HCCCCCCCCC--cc---------cCCcccccccCCCceEEEEEEeCC
Q 012814           73 GWFMDVFHVIDQQGKKITDGKTIDYIEKA----LGPKGHITAG--AK---------TWPSKQVGVHSVGDHTAIELIGRD  137 (456)
Q Consensus        73 g~~~d~f~V~~~~g~~~~~~~~~~~L~~~----L~~~l~~~~~--~~---------~~~~~~v~~~~~~~~t~i~v~~~D  137 (456)
                      |+++|+|+|.++.|. ..++..+++|++.    |.+.......  .+         .++.+.+.+.++.++|+|+|.++|
T Consensus       717 g~~ld~f~V~~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~D  795 (856)
T PRK03059        717 GYALDTFQVLDPEED-VHYRDIINLVEHELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSAND  795 (856)
T ss_pred             CeEEEEEEEeCCCCC-CChHHHHHHHHHHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCC
Confidence            999999999998777 3344455555554    4443221110  11         111223344667789999999999


Q ss_pred             cccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhc
Q 012814          138 RPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR  201 (456)
Q Consensus       138 rpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~  201 (456)
                      |||||++|+++|+.+|+||++|+|+|.|+++.|+|||+++    ++.+++++++|+++|.++|+
T Consensus       796 rpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~----~~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        796 RPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGS----GLSDNRLQIQLETELLDALA  855 (856)
T ss_pred             cchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCC----CCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999653    24567899999999998875

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=4.5e-27  Score=265.25  Aligned_cols=203  Identities=23%  Similarity=0.329  Sum_probs=171.3

Q ss_pred             CCCCCCCCCChH----HHHHHhhc----CCCEEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE-e
Q 012814            1 MANAYWPYFDPE----YESLSLRI----NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-D   71 (456)
Q Consensus         1 ~~~~Y~~~~~~~----~~~~~~~~----~~p~V~v~~~~~~~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~   71 (456)
                      |+++||.+++++    |++++...    .++.|.+.+....+.++|+|+++||||||++||++|+.+|+||++|+|+| .
T Consensus       690 ~~~~yf~~~~~~~i~~h~~~~~~~~~~~~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~  769 (931)
T PRK05092        690 HYPAYWLAVDLDTQARHARFIRDADDAGRPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTT  769 (931)
T ss_pred             CCcHHhcCCCHHHHHHHHHHHHhccccCCCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEec
Confidence            789999999999    88888764    34688888888889999999999999999999999999999999999998 7


Q ss_pred             CCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCC----CCC-------------cccCCcccccccCCCceEEEEEE
Q 012814           72 GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHI----TAG-------------AKTWPSKQVGVHSVGDHTAIELI  134 (456)
Q Consensus        72 ~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~----~~~-------------~~~~~~~~v~~~~~~~~t~i~v~  134 (456)
                      +|+++|+|+|++++|.+..+++.++.|++.|...+..    +..             +..++.+.++++.+..+|+|+|.
T Consensus       770 dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~  849 (931)
T PRK05092        770 DGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVN  849 (931)
T ss_pred             CCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEE
Confidence            9999999999999888766666666666555433211    110             01122334555677789999999


Q ss_pred             eCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhcCCC
Q 012814          135 GRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCD  204 (456)
Q Consensus       135 ~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~~~~  204 (456)
                      +.||||||++|+++|+++|+||.+|+|.|.++++.|+|+|++ .+|.++.++++++.|+++|.++|.++.
T Consensus       850 ~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d-~~g~~i~~~~~~~~l~~~L~~~L~~~~  918 (931)
T PRK05092        850 GRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTD-LFGLKITNEARQAAIRRALLAALAEGE  918 (931)
T ss_pred             ECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeC-CCCCcCCCHHHHHHHHHHHHHHhcCcc
Confidence            999999999999999999999999999999999999999999 589999998899999999999998753

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.3e-26  Score=245.61  Aligned_cols=199  Identities=22%  Similarity=0.264  Sum_probs=162.8

Q ss_pred             CCCCCCCCCChH----HHHHHhhc--CCCEEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE-eCC
Q 012814            1 MANAYWPYFDPE----YESLSLRI--NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGG   73 (456)
Q Consensus         1 ~~~~Y~~~~~~~----~~~~~~~~--~~p~V~v~~~~~~~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~~g   73 (456)
                      ++.+||.+++++    |++++.+.  ++|.|.+...+..+.++|+|++||+|.||+.+|+.+...|+||++|+|+| .+|
T Consensus       644 ~~~~yflr~~~~~iawH~~~l~~~~~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG  723 (867)
T COG2844         644 CYANYFLRHSARDIAWHARHLVRHDLGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDG  723 (867)
T ss_pred             ccccceeecCHHHHhHHHHHHHhhhccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCC
Confidence            467899999999    99999876  78999988888889999999999999999999999999999999999997 899


Q ss_pred             EEEEEEEEEeCCCCCCCChhHHHHHHH----HHCCCCCCCCC----------cccCCcccccccCCCceEEEEEEeCCcc
Q 012814           74 WFMDVFHVIDQQGKKITDGKTIDYIEK----ALGPKGHITAG----------AKTWPSKQVGVHSVGDHTAIELIGRDRP  139 (456)
Q Consensus        74 ~~~d~f~V~~~~g~~~~~~~~~~~L~~----~L~~~l~~~~~----------~~~~~~~~v~~~~~~~~t~i~v~~~Drp  139 (456)
                      +++|+|+|.+++|.++.+ .+...++.    ++...-..+..          +..+|++.+.+..+...|+|+|.+.|||
T Consensus       724 ~alDtfiv~~~~g~~~~~-dr~~~~~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRp  802 (867)
T COG2844         724 YALDTFIVLEPDGFPVEE-DRRAALRGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRP  802 (867)
T ss_pred             ceeeeEEEecCCCCccch-hHHHHHHHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcc
Confidence            999999999999988773 34444433    33332111111          1123344444566678999999999999


Q ss_pred             cHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhcC
Q 012814          140 GLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG  202 (456)
Q Consensus       140 GLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~~  202 (456)
                      |||++|+++|++++++|++|+|+|.|+++.|+|||++ ..+.++. ++..+.+.+.|.+++..
T Consensus       803 GLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~-~~~~~l~-~~~~q~l~~~ll~al~~  863 (867)
T COG2844         803 GLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTD-ADGQALN-AELRQSLLQRLLEALLP  863 (867)
T ss_pred             cHHHHHHHHHHhcccceeeeeeccccccceeEEEEec-cccccCC-HHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999 5899985 45556666666666654

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.94  E-value=3.5e-26  Score=255.11  Aligned_cols=164  Identities=21%  Similarity=0.388  Sum_probs=148.3

Q ss_pred             CCCCCEEEEEecCCCCeEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEe-cCCceEEEEEEEccCCCCCCCHHHHHH
Q 012814          252 PSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISS-DGPHASQEYYIRHMDGCILDTEGEKER  330 (456)
Q Consensus       252 ~~~~~~v~v~n~~~~~~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~  330 (456)
                      ...+|.|.++|.++.++++|+|+++||||||++|+++|+.+|+||.+|+|.| .+|+++|+|+|++.+|.++. ++.+++
T Consensus       661 ~~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~-~~~~~~  739 (854)
T PRK01759        661 FRGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLE-FDRRRQ  739 (854)
T ss_pred             cCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCC-HHHHHH
Confidence            3457888899999999999999999999999999999999999999999998 58999999999999999885 578889


Q ss_pred             HHHHHHHHHhh--------cC--------------------CCceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeec
Q 012814          331 VIKCLEAAIRR--------RV--------------------SEGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTV  382 (456)
Q Consensus       331 l~~~L~~~l~~--------r~--------------------~~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~  382 (456)
                      |++.|.+++..        +.                    ...|+|||.+.|||||||+|+++|.++|++|+.|||+|+
T Consensus       740 l~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~  819 (854)
T PRK01759        740 LEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTI  819 (854)
T ss_pred             HHHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEccc
Confidence            99999888631        00                    135899999999999999999999999999999999999


Q ss_pred             CceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhh
Q 012814          383 GEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTM  416 (456)
Q Consensus       383 g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~  416 (456)
                      |++++|+|||+|.+|.|+++++.++|+++|.+++
T Consensus       820 gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l  853 (854)
T PRK01759        820 GEKAEDFFILTNQQGQALDEEERKALKSRLLSNL  853 (854)
T ss_pred             CceEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence            9999999999999999999766699999998874

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.94  E-value=3.8e-26  Score=255.65  Aligned_cols=163  Identities=23%  Similarity=0.356  Sum_probs=149.2

Q ss_pred             CCCEEEEEecCCCCeEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEec-CCceEEEEEEEccCCCCCCCHHHHHHHH
Q 012814          254 FKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD-GPHASQEYYIRHMDGCILDTEGEKERVI  332 (456)
Q Consensus       254 ~~~~v~v~n~~~~~~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~-~g~~~d~f~V~~~~g~~~~~~~~~~~l~  332 (456)
                      .+|.|.++|.++.++++|+|+++||||||++|+++|+.+|+||.+|+|+|. +|+++|+|+|++.+|.+++ ++.+++|+
T Consensus       687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~-~~~~~~I~  765 (884)
T PRK05007        687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLS-QDRHQVIR  765 (884)
T ss_pred             CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCC-HHHHHHHH
Confidence            578888999999999999999999999999999999999999999999987 6799999999999999884 57888999


Q ss_pred             HHHHHHHhhc---------C--------------------CCceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecC
Q 012814          333 KCLEAAIRRR---------V--------------------SEGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVG  383 (456)
Q Consensus       333 ~~L~~~l~~r---------~--------------------~~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g  383 (456)
                      +.|.+++..+         .                    +..|+|||.+.|||||||+|+++|.++|++|.+|||+|+|
T Consensus       766 ~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~g  845 (884)
T PRK05007        766 KALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIG  845 (884)
T ss_pred             HHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccC
Confidence            9999887321         0                    1358999999999999999999999999999999999999


Q ss_pred             ceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhhh
Q 012814          384 EQAVNVFYVRDASGNPVDMKTIEALRKEIGHTML  417 (456)
Q Consensus       384 ~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~~  417 (456)
                      ++++|+|||++.+|.|++++.+++|+++|.+++-
T Consensus       846 era~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~  879 (884)
T PRK05007        846 ERVEDLFILATADRRALNEELQQELRQRLTEALN  879 (884)
T ss_pred             ceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999998788999999999875

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=5.6e-24  Score=235.30  Aligned_cols=173  Identities=21%  Similarity=0.229  Sum_probs=143.8

Q ss_pred             CCCEEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHH
Q 012814           21 NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEK  100 (456)
Q Consensus        21 ~~p~V~v~~~~~~~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~  100 (456)
                      .+|.|.+.+.. .+.++|+|+|+||||||++||++|+.+|+||++|+|+|.+|+++|+|+|.++.|.+...+...+.|++
T Consensus       586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~  664 (774)
T PRK03381        586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRR  664 (774)
T ss_pred             CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHH
Confidence            67899998888 89999999999999999999999999999999999999999999999999988876544556777787


Q ss_pred             HHCCCCCCCC---Ccc------------cCCcccccccCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC
Q 012814          101 ALGPKGHITA---GAK------------TWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN  165 (456)
Q Consensus       101 ~L~~~l~~~~---~~~------------~~~~~~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~  165 (456)
                      +|.+.+....   ..+            .++...+.+..+.++|+|+|.+.||||||++|+++|+++|+||++|+|.|.|
T Consensus       665 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g  744 (774)
T PRK03381        665 ALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLG  744 (774)
T ss_pred             HHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecC
Confidence            7777432110   010            0111223345666799999999999999999999999999999999999999


Q ss_pred             ceeEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814          166 RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (456)
Q Consensus       166 ~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~  197 (456)
                      +++.|+|||++ .+|.++.++  ++.|+++|.
T Consensus       745 ~~a~D~F~V~d-~~g~~~~~~--~~~l~~~L~  773 (774)
T PRK03381        745 ADVVDVFYVTG-AAGGPLADA--RAAVEQAVL  773 (774)
T ss_pred             CeEEEEEEEEC-CCCCcCchH--HHHHHHHhh
Confidence            99999999999 589999764  678877764

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.92  E-value=1.7e-23  Score=234.85  Aligned_cols=164  Identities=24%  Similarity=0.312  Sum_probs=148.7

Q ss_pred             CCCEEEEEecCCCCeEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEe-cCCceEEEEEEEccCCCCCCCHHHHHHHH
Q 012814          254 FKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISS-DGPHASQEYYIRHMDGCILDTEGEKERVI  332 (456)
Q Consensus       254 ~~~~v~v~n~~~~~~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~l~  332 (456)
                      ..|.|.++|....++++|+|+++||||||++|+++|+.+|+||.+|+|+| .+|+++|+|+|++.+|.++.+++.+++|+
T Consensus       654 ~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~  733 (850)
T TIGR01693       654 GGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELL  733 (850)
T ss_pred             CCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHH
Confidence            46788888877799999999999999999999999999999999999995 58999999999999999998888899999


Q ss_pred             HHHHHHHhh----------c--C--------------------CCceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEe
Q 012814          333 KCLEAAIRR----------R--V--------------------SEGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVS  380 (456)
Q Consensus       333 ~~L~~~l~~----------r--~--------------------~~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~  380 (456)
                      +.|.+++..          +  .                    +..|+|+|.|.|||||||+|+++|.++|++|++|+|.
T Consensus       734 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~  813 (850)
T TIGR01693       734 QGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKIT  813 (850)
T ss_pred             HHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEE
Confidence            998887631          0  0                    1258999999999999999999999999999999999


Q ss_pred             ecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhhh
Q 012814          381 TVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTML  417 (456)
Q Consensus       381 T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~~  417 (456)
                      |+|++++|+|||++..|.|+++++++.|+++|.++++
T Consensus       814 t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l~  850 (850)
T TIGR01693       814 TFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASVA  850 (850)
T ss_pred             ecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHhC
Confidence            9999999999999999999998788999999998764

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=4.9e-23  Score=218.69  Aligned_cols=164  Identities=25%  Similarity=0.349  Sum_probs=147.9

Q ss_pred             CCCCEEEEEecCCCCeEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEec-CCceEEEEEEEccCCCCCCCHHHHHHH
Q 012814          253 SFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD-GPHASQEYYIRHMDGCILDTEGEKERV  331 (456)
Q Consensus       253 ~~~~~v~v~n~~~~~~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~-~g~~~d~f~V~~~~g~~~~~~~~~~~l  331 (456)
                      ...|.|.+.+.+..+.++|+|++||+|.||+.++.++...|+||.+|+|+|+ +|+++|+|+|.+++|.++. +.+...+
T Consensus       669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~-~dr~~~~  747 (867)
T COG2844         669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVE-EDRRAAL  747 (867)
T ss_pred             ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccc-hhHHHHH
Confidence            4678888889988999999999999999999999999999999999999986 8999999999999999987 5677777


Q ss_pred             HHHHHHHHhh---------cC----------C----------CceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeec
Q 012814          332 IKCLEAAIRR---------RV----------S----------EGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTV  382 (456)
Q Consensus       332 ~~~L~~~l~~---------r~----------~----------~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~  382 (456)
                      +..|.+++..         |.          |          +.|+|||.+.||||||++|+++|++++++|.+|||+|.
T Consensus       748 ~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~  827 (867)
T COG2844         748 RGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF  827 (867)
T ss_pred             HHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccc
Confidence            7777776631         10          1          36899999999999999999999999999999999999


Q ss_pred             CceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhhh
Q 012814          383 GEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTML  417 (456)
Q Consensus       383 g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~~  417 (456)
                      |++++|+|||++..|.+++++..+.+.+.+.++++
T Consensus       828 GErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~  862 (867)
T COG2844         828 GERVEDVFIVTDADGQALNAELRQSLLQRLLEALL  862 (867)
T ss_pred             cccceeEEEEeccccccCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999988888889999999877

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.90  E-value=1.8e-22  Score=226.14  Aligned_cols=183  Identities=20%  Similarity=0.285  Sum_probs=157.3

Q ss_pred             CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEeCCCCCcCC-ChHHHHHHHHHHHHHhcCC
Q 012814          126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVG-DQTRLSLMEEQLKNILRGC  203 (456)
Q Consensus       126 ~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~~~~g~~l~-d~~~~~~l~~~L~~~L~~~  203 (456)
                      .+.+.|.|+++||||||++|+++|+.+|+||.+|+|+| .+|.+.|+|+|++ .+|.++. +++++++|+++|.++|.++
T Consensus       702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d-~~g~~~~~~~~r~~~i~~~L~~~L~~~  780 (895)
T PRK00275        702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLD-DDGEPIGDNPARIEQIREGLTEALRNP  780 (895)
T ss_pred             CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeC-CCCCCccchHHHHHHHHHHHHHHHcCC
Confidence            47899999999999999999999999999999999987 6788999999999 4788754 4589999999999999986


Q ss_pred             CCcccccccceeecccccCchhHHHHhhhcCccccCCCCCcCccCCCCCCCCCEEEEEecCCCCeEEEEEEeeCchhHHH
Q 012814          204 DDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMF  283 (456)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~n~~~~~~~~v~V~~~Dr~gll~  283 (456)
                      ..    .  ...       +.++. +     ..            ...+..+|.|.++|..+.++|+|.|+++||||||+
T Consensus       781 ~~----~--~~~-------~~~~~-~-----~~------------~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa  829 (895)
T PRK00275        781 DD----Y--PTI-------IQRRV-P-----RQ------------LKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLA  829 (895)
T ss_pred             Cc----c--chh-------hhhhh-h-----hh------------ccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHH
Confidence            53    1  000       01110 0     00            12456678999999999999999999999999999


Q ss_pred             HHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHh
Q 012814          284 DIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR  340 (456)
Q Consensus       284 ~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~  340 (456)
                      +|+++|+.+|+||..|+|.|.++++.|+|+|++.+|.++.+++.+++|+++|.++|.
T Consensus       830 ~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~  886 (895)
T PRK00275        830 RIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLD  886 (895)
T ss_pred             HHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999888899999999998874

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.90  E-value=2.2e-22  Score=224.13  Aligned_cols=161  Identities=26%  Similarity=0.356  Sum_probs=139.9

Q ss_pred             CCCEEEEEe-cCCCCeEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEec-CCceEEEEEEEccCCCCCCCHHHHHHH
Q 012814          254 FKPEITVER-LEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD-GPHASQEYYIRHMDGCILDTEGEKERV  331 (456)
Q Consensus       254 ~~~~v~v~n-~~~~~~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~-~g~~~d~f~V~~~~g~~~~~~~~~~~l  331 (456)
                      ..|.|.+.. .++.+.++|+|+++||||||++||++|+.+|+||.+|+|+|+ +|+++|+|+|.+++|..   ...+++|
T Consensus       675 ~~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~---~~~~~~i  751 (869)
T PRK04374        675 GQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA---DGDPQRL  751 (869)
T ss_pred             CCCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC---hHHHHHH
Confidence            356665544 677899999999999999999999999999999999999985 89999999999998874   2557778


Q ss_pred             HHHHHHHHhh---------c-C--------------------CCceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEee
Q 012814          332 IKCLEAAIRR---------R-V--------------------SEGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVST  381 (456)
Q Consensus       332 ~~~L~~~l~~---------r-~--------------------~~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T  381 (456)
                      ++.|.+++..         + .                    ...|.|+|.+.|||||||+|+.+|+++|++|..|+|+|
T Consensus       752 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T  831 (869)
T PRK04374        752 AAALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIAT  831 (869)
T ss_pred             HHHHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEe
Confidence            8888877631         1 0                    12589999999999999999999999999999999999


Q ss_pred             cCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhhh
Q 012814          382 VGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTML  417 (456)
Q Consensus       382 ~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~~  417 (456)
                      .|++++|+|||+|.+|.+++++++++|+++|.+++-
T Consensus       832 ~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~  867 (869)
T PRK04374        832 FGERAEDQFQITDEHDRPLSESARQALRDALCACLD  867 (869)
T ss_pred             cCCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhc
Confidence            999999999999999999877656999999998863

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.89  E-value=1.5e-21  Score=220.59  Aligned_cols=189  Identities=21%  Similarity=0.377  Sum_probs=161.2

Q ss_pred             ccCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHh
Q 012814          122 VHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (456)
Q Consensus       122 ~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L  200 (456)
                      +.++.+.+.|+|+++||||||++|+++|+.+|+||.+|+|+| .++.+.|+|+|++ ..|.++.+++++++|++.|..++
T Consensus       726 ~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~-~~g~~~~~~~~~~~l~~~L~~~l  804 (931)
T PRK05092        726 PDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQD-AFGRDEDEPRRLARLAKAIEDAL  804 (931)
T ss_pred             ecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHH
Confidence            355568999999999999999999999999999999999998 7888999999999 47888777889999999999999


Q ss_pred             cCCCCcccccccceeecccccCchhHHHHhhhcCccccCCCCCcCccCCCCCCCCCEEEEEecCCCCeEEEEEEeeCchh
Q 012814          201 RGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAK  280 (456)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~n~~~~~~~~v~V~~~Dr~g  280 (456)
                      .++..    .             +..+........   +         ...+..+|.|.++|..+.++++|.|.++||||
T Consensus       805 ~~~~~----~-------------~~~~~~r~~~~~---~---------~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpG  855 (931)
T PRK05092        805 SGEVR----L-------------PEALAKRTKPKK---R---------ARAFHVPPRVTIDNEASNRFTVIEVNGRDRPG  855 (931)
T ss_pred             cCCCC----C-------------ccccccccCccc---c---------ccCCCCCCEEEEeeCCCCCeEEEEEEECCcCc
Confidence            87643    1             101110000000   0         12556789999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHh
Q 012814          281 LMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR  340 (456)
Q Consensus       281 ll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~  340 (456)
                      ||++|+++|+++|+||..|+|.|.++.+.|+|+|++.+|.++.+++.++.|+++|.+.+.
T Consensus       856 Ll~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~  915 (931)
T PRK05092        856 LLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALA  915 (931)
T ss_pred             HHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999888889999999998884

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.88  E-value=2.6e-21  Score=214.13  Aligned_cols=178  Identities=21%  Similarity=0.236  Sum_probs=146.8

Q ss_pred             cCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhcC
Q 012814          123 HSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG  202 (456)
Q Consensus       123 ~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~~  202 (456)
                      .+ .+.+.|.|+|+||||||++|+++|+.+|+||.+|+|+|.+|.+.|+|+|+++ .|.+.    .++++++.|.++|.+
T Consensus       595 ~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~-~~~~~----~~~~l~~~L~~~L~~  668 (774)
T PRK03381        595 AD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPR-FGSPP----DAALLRQDLRRALDG  668 (774)
T ss_pred             CC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC-CCCcc----hHHHHHHHHHHHHcC
Confidence            45 6899999999999999999999999999999999999999999999999994 66553    258999999999998


Q ss_pred             CCCcccccccceeecccccCchhHHHHhhhcCccccCCCCCcCccCCCCCCCCCEEEEEecCCCCeEEEEEEeeCchhHH
Q 012814          203 CDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLM  282 (456)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~n~~~~~~~~v~V~~~Dr~gll  282 (456)
                      +..    .             ..++.+....  ....        ....+..++.|.++|..+.++++|+|.++||||||
T Consensus       669 ~~~----~-------------~~~~~~~~~~--~~~~--------~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLl  721 (774)
T PRK03381        669 DLD----V-------------LARLAAREAA--AAAV--------PVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLL  721 (774)
T ss_pred             CCc----h-------------hhhhhccccc--cccc--------ccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHH
Confidence            543    0             1111110000  0000        01255677899999999999999999999999999


Q ss_pred             HHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHH
Q 012814          283 FDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCL  335 (456)
Q Consensus       283 ~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L  335 (456)
                      ++|+++|+++|+||..|+|.|.+++++|+|+|++.+|.+++++  ++.|+++|
T Consensus       722 a~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L  772 (774)
T PRK03381        722 ARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADA--RAAVEQAV  772 (774)
T ss_pred             HHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchH--HHHHHHHh
Confidence            9999999999999999999999999999999999999998765  67777665

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.88  E-value=4.3e-21  Score=214.29  Aligned_cols=181  Identities=19%  Similarity=0.232  Sum_probs=151.0

Q ss_pred             cCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhc
Q 012814          123 HSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR  201 (456)
Q Consensus       123 ~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~  201 (456)
                      .+..+.+.|.|+++||||||++|+++|+.+|+||.+|+|+| .+|.+.|+|+|.++ .|. ..+++++++|++.|.++|.
T Consensus       673 ~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~-~~~-~~~~~~~~~i~~~l~~~l~  750 (856)
T PRK03059        673 SPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDP-EED-VHYRDIINLVEHELAERLA  750 (856)
T ss_pred             cCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCC-CCC-CChHHHHHHHHHHHHHHHc
Confidence            45668899999999999999999999999999999999987 78889999999995 455 4457899999999999999


Q ss_pred             CCCCcccccccceeecccccCchhHHHHhhhcCccccCCCCCcCccCCCCCCCCCEEEEEecCCCCeEEEEEEeeCchhH
Q 012814          202 GCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKL  281 (456)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~n~~~~~~~~v~V~~~Dr~gl  281 (456)
                      ++..    .             +..+...  ...   +         ...+..+|.|.+++..+.++|+|.|.++|||||
T Consensus       751 ~~~~----~-------------~~~~~~~--~~~---~---------~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGL  799 (856)
T PRK03059        751 EQAP----L-------------PEPSKGR--LSR---Q---------VKHFPITPRVDLRPDERGQYYILSVSANDRPGL  799 (856)
T ss_pred             CCCC----c-------------chhhccc--ccc---c---------ccCCCCCceEEEEEcCCCCEEEEEEEeCCcchH
Confidence            8643    1             1111110  000   0         125667789999999999999999999999999


Q ss_pred             HHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHH
Q 012814          282 MFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAI  339 (456)
Q Consensus       282 l~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l  339 (456)
                      |++|+++|+.+|+||..|+|+|.+|++.|+|+|.+   .++.+++.+++|++.|.+++
T Consensus       800 La~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~---~~~~~~~~~~~l~~~L~~~L  854 (856)
T PRK03059        800 LYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDG---SGLSDNRLQIQLETELLDAL  854 (856)
T ss_pred             HHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcC---CCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999953   33557788999999998765

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.79  E-value=9.9e-19  Score=136.61  Aligned_cols=71  Identities=21%  Similarity=0.295  Sum_probs=66.9

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCCh-HHHHHHHHHHHHhh
Q 012814          346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDM-KTIEALRKEIGHTM  416 (456)
Q Consensus       346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~-~~~~~L~~~l~~~~  416 (456)
                      .|+|||.++|||||||+|+++|.++|++|.+|+|+|+|++++|+|||++.+|.|+++ ++++.|+++|.+++
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al   72 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAI   72 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHH
Confidence            378999999999999999999999999999999999999999999999999999975 57789999999875

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.78  E-value=9.1e-19  Score=135.85  Aligned_cols=69  Identities=26%  Similarity=0.381  Sum_probs=64.5

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCC-hHHHHHHHHHHHH
Q 012814          346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVD-MKTIEALRKEIGH  414 (456)
Q Consensus       346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~-~~~~~~L~~~l~~  414 (456)
                      .|+|||.+.|||||||+|+++|+++|++|++|+|+|+|++++|+|||+|.+|.|++ ++.++.|+++|..
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~   70 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT   70 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence            37899999999999999999999999999999999999999999999999999997 4678899998864

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.74  E-value=9.7e-18  Score=131.03  Aligned_cols=70  Identities=23%  Similarity=0.373  Sum_probs=65.6

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEe--ecCceeeeEEEEEeCCCCCCCh-HHHHHHHHHHHHhhh
Q 012814          347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVS--TVGEQAVNVFYVRDASGNPVDM-KTIEALRKEIGHTML  417 (456)
Q Consensus       347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~--T~g~~~~d~F~v~d~~g~~l~~-~~~~~L~~~l~~~~~  417 (456)
                      |+|||.+.|||||||+|+++|+++|++|++|||+  |+|++++|+||| +.+|.++++ ++++.|+++|.+++.
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~   73 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMV   73 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence            5799999999999999999999999999999999  999999999999 888989864 678999999999875

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.74  E-value=1.5e-17  Score=129.96  Aligned_cols=74  Identities=18%  Similarity=0.267  Sum_probs=70.9

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhcC
Q 012814          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG  202 (456)
Q Consensus       128 ~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~~  202 (456)
                      +|+|+|.|+|||||||+|+++|+++|++|..|+|.|.|+++.|+|||++ .+|.|+.++++.++|+++|.++|..
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d-~~g~kl~~~~~~~~l~~~L~~al~~   74 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRH-KDGRTLSTEGERQRVIKCLEAAIER   74 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEc-CCCCccCCHHHHHHHHHHHHHHHhc
Confidence            5899999999999999999999999999999999999999999999999 6999999999999999999998864

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.71  E-value=8.1e-17  Score=124.94  Aligned_cols=69  Identities=22%  Similarity=0.325  Sum_probs=65.4

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (456)
Q Consensus       128 ~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~  197 (456)
                      +|+|+|.++||||||++|+++|+++|++|+.|+|.|.|+++.|+|||++ ..|.|+.|+++++.|+++|.
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d-~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTD-QLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHhc
Confidence            5899999999999999999999999999999999999999999999999 58999999999899988764

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.69  E-value=3.4e-16  Score=144.71  Aligned_cols=143  Identities=10%  Similarity=0.119  Sum_probs=112.2

Q ss_pred             CCCeEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHh----
Q 012814          265 DKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR----  340 (456)
Q Consensus       265 ~~~~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~----  340 (456)
                      ...+++|++.|+||||++++++++|+++||||.++++...+|.|.-++.|.   |.    +...+.|+..|...-.    
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs---~~----~~~~~~le~~L~~l~~~~~L   77 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS---GS----WNAITLIESTLPLKGAELDL   77 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe---CC----hhHHHHHHHHHHhhhhhcCe
Confidence            346789999999999999999999999999999999999999988777773   22    2467777777764321    


Q ss_pred             ----hcC--------CCceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCc--eeeeEEEEEeCCCCCCChHHHH
Q 012814          341 ----RRV--------SEGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGE--QAVNVFYVRDASGNPVDMKTIE  406 (456)
Q Consensus       341 ----~r~--------~~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~--~~~d~F~v~d~~g~~l~~~~~~  406 (456)
                          ++.        +.++.++|.|.||||++++||++|+++|+||...+..|+++  ...+.|.+.-.-.-|.+ ..+.
T Consensus        78 ~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~-~~~~  156 (190)
T PRK11589         78 LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPAS-QDAA  156 (190)
T ss_pred             EEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCC-CCHH
Confidence                121        12489999999999999999999999999999999999996  57778888665555543 2345


Q ss_pred             HHHHHHHHh
Q 012814          407 ALRKEIGHT  415 (456)
Q Consensus       407 ~L~~~l~~~  415 (456)
                      .|+++|.+.
T Consensus       157 ~L~~~l~~l  165 (190)
T PRK11589        157 NIEQAFKAL  165 (190)
T ss_pred             HHHHHHHHH
Confidence            555555543

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.67  E-value=5e-16  Score=121.39  Aligned_cols=71  Identities=14%  Similarity=0.208  Sum_probs=67.1

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEe--cCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhc
Q 012814          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW--THNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR  201 (456)
Q Consensus       129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~--T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~  201 (456)
                      |+|+|.+.|||||||+|+++|+++|++|++|+|.  |.|+++.|+||| + ..|.++.|+++++.|+++|.++|.
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~-~~g~kl~d~~~~~~L~~~L~~~l~   73 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-Q-SDGKKIMDPKKQAALCARLREEMV   73 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-e-CCCCccCCHHHHHHHHHHHHHHhc
Confidence            6899999999999999999999999999999999  999999999999 6 468899999999999999998875

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.61  E-value=5.2e-15  Score=136.81  Aligned_cols=157  Identities=17%  Similarity=0.208  Sum_probs=111.4

Q ss_pred             CCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCC---CC
Q 012814           32 CPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKG---HI  108 (456)
Q Consensus        32 ~~~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l---~~  108 (456)
                      +..+++|++.|+||||+++.++++|+++||||.++++...+|.|.-++.|.   +.+    .....|+.+|....   .+
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs---~~~----~~~~~le~~L~~l~~~~~L   77 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS---GSW----NAITLIESTLPLKGAELDL   77 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe---CCh----hHHHHHHHHHHhhhhhcCe
Confidence            457899999999999999999999999999999999999999988788884   332    35677888776532   11


Q ss_pred             CCCc-ccCCcccccccCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCc--eeEEEEEEEeCCCCCcCCC
Q 012814          109 TAGA-KTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNR--RIACVLYVNDDTTCRAVGD  185 (456)
Q Consensus       109 ~~~~-~~~~~~~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~--~~~d~F~v~~~~~g~~l~d  185 (456)
                      .... +.....   ....+..+.++|.|.|||||+++|+++|+++|+||.+.+..|.+.  ...++|...- .-.-|.  
T Consensus        78 ~i~v~~~~~~~---~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~-~v~lP~--  151 (190)
T PRK11589         78 LIVMKRTTARP---RPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQI-TAHSPA--  151 (190)
T ss_pred             EEEEEeccccc---cccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEE-EEEcCC--
Confidence            1111 111100   011123689999999999999999999999999999999998764  3444444433 111121  


Q ss_pred             hHHHHHHHHHHHHHhc
Q 012814          186 QTRLSLMEEQLKNILR  201 (456)
Q Consensus       186 ~~~~~~l~~~L~~~L~  201 (456)
                      ....+.|+.+|.+...
T Consensus       152 ~~~~~~L~~~l~~l~~  167 (190)
T PRK11589        152 SQDAANIEQAFKALCT  167 (190)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            1235778888875444

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.60  E-value=8.3e-15  Score=115.29  Aligned_cols=73  Identities=58%  Similarity=0.957  Sum_probs=68.3

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCC-CCcCCChHHHHHHHHHHHHHhcC
Q 012814          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTT-CRAVGDQTRLSLMEEQLKNILRG  202 (456)
Q Consensus       129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~-g~~l~d~~~~~~l~~~L~~~L~~  202 (456)
                      |+|+|.++||||||++|+++|+.+||||++|+++|.++.+.|+|+|+++ . +.++.++++++++++.|.++|.|
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~-~~~~~~~~~~~~~~i~~~L~~~l~g   74 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDE-ETGAPIDDPIRLASIEDRLDNVLRG   74 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcC-cCCCCCCCHHHHHHHHHHHHHHhcC
Confidence            6899999999999999999999999999999999999999999999994 5 77788889999999999998864

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.52  E-value=9.9e-14  Score=108.84  Aligned_cols=71  Identities=28%  Similarity=0.482  Sum_probs=65.1

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC-CceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHh
Q 012814          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (456)
Q Consensus       129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~-~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L  200 (456)
                      +.|+|.++||||||++|+++|+.+|+||.+|+|+|. ++++.|+|+|++ ..+.++.++++++++++.|.++|
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~-~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD-PDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEEC-CCCCCCChHHHHHHHHHHHHhhC
Confidence            678999999999999999999999999999999997 699999999999 47888877889999999998764

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.51  E-value=9.2e-14  Score=109.00  Aligned_cols=69  Identities=29%  Similarity=0.483  Sum_probs=63.2

Q ss_pred             EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEe-CCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCC
Q 012814           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP  104 (456)
Q Consensus        36 ~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~-~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~  104 (456)
                      ++|.|+++||||||++++++|+.+|+||++|+|+|. +|+++|+|+|++++|.++.+++.+++|++.|..
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~   71 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED   71 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence            689999999999999999999999999999999985 799999999999988887777788888888864

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.50  E-value=1.7e-13  Score=107.88  Aligned_cols=70  Identities=31%  Similarity=0.479  Sum_probs=64.5

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCC-CCCCCh-HHHHHHHHHHHHhh
Q 012814          347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDAS-GNPVDM-KTIEALRKEIGHTM  416 (456)
Q Consensus       347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~-g~~l~~-~~~~~L~~~l~~~~  416 (456)
                      |+|||.++|||||+++|+++|+++|+||..|+|.|.|+.+.|+|||+|.. |.|+.+ +++++++++|.+++
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l   72 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVL   72 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHh
Confidence            57999999999999999999999999999999999999999999999988 888764 67789999998774

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.50  E-value=2e-13  Score=107.89  Aligned_cols=71  Identities=23%  Similarity=0.389  Sum_probs=64.7

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhcC
Q 012814          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG  202 (456)
Q Consensus       130 ~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~~  202 (456)
                      +++|.++||||||++|+++|+.+|+||.+|+|.| .++++.|+|+|+++ .+. ..+++++++++++|.++|..
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~-~~~~~~~~~l~~~L~~~L~~   73 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA-REL-LHTKKRREETYDYLRAVLGD   73 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-CCC-CCCHHHHHHHHHHHHHHHch
Confidence            6899999999999999999999999999999997 89999999999995 555 55678999999999999875

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.49  E-value=1.1e-13  Score=122.71  Aligned_cols=141  Identities=17%  Similarity=0.204  Sum_probs=112.9

Q ss_pred             CCeEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHh-----
Q 012814          266 KGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR-----  340 (456)
Q Consensus       266 ~~~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~-----  340 (456)
                      ..+++|+++|+||||++..+++...++||||.++|+...++.+.-+..+   .|.    ++...+|+.+|...=.     
T Consensus         3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~li---sgs----~dav~~le~~l~~l~~~~~L~   75 (176)
T COG2716           3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLI---SGS----WDAVTLLEATLPLLGAELDLL   75 (176)
T ss_pred             ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEE---eeC----HHHHHHHHHHhhcccccCCeE
Confidence            4678999999999999999999999999999999999999888755555   343    3678888888754211     


Q ss_pred             ---hcC--------CCceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCce--eeeEEEEEeCCCCCCChHHHHH
Q 012814          341 ---RRV--------SEGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQ--AVNVFYVRDASGNPVDMKTIEA  407 (456)
Q Consensus       341 ---~r~--------~~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~--~~d~F~v~d~~g~~l~~~~~~~  407 (456)
                         .|.        +..+.++|.+.|||||+.++|++|.++|++|++....|+...  ....|.+.-.-+-|.+ ..+..
T Consensus        76 v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~-~~i~~  154 (176)
T COG2716          76 VVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPAN-LSISA  154 (176)
T ss_pred             EEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCc-CcHHH
Confidence               121        236899999999999999999999999999999999998654  5668998666677766 34566


Q ss_pred             HHHHHHH
Q 012814          408 LRKEIGH  414 (456)
Q Consensus       408 L~~~l~~  414 (456)
                      |+++|.+
T Consensus       155 l~~~f~a  161 (176)
T COG2716         155 LRDAFEA  161 (176)
T ss_pred             HHHHHHH
Confidence            6666655

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.49  E-value=2.6e-13  Score=107.30  Aligned_cols=69  Identities=30%  Similarity=0.404  Sum_probs=61.9

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHCCceEEEEEEee-cCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhh
Q 012814          348 SLELCAKDRVGLLSEVTRILRENGLSVTRAGVST-VGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTM  416 (456)
Q Consensus       348 ~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T-~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~  416 (456)
                      ++||.+.||||||++|+.+|+++|++|.+|+|.| .++++.|+|||+|..|...+++++++++++|.+++
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L   71 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVL   71 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999997 89999999999999777444567788999988775

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.42  E-value=1.1e-12  Score=100.49  Aligned_cols=52  Identities=29%  Similarity=0.401  Sum_probs=49.3

Q ss_pred             EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE-eCCEEEEEEEEEeCCCC
Q 012814           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGK   87 (456)
Q Consensus        36 ~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~   87 (456)
                      .+|+|+++||||||++++++|+.+|+||++|+|+| .+|+++|+|+|++.+|.
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~   54 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG   54 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc
Confidence            58999999999999999999999999999999997 79999999999998776

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.40  E-value=1.3e-12  Score=115.83  Aligned_cols=159  Identities=14%  Similarity=0.166  Sum_probs=120.0

Q ss_pred             CCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCC---C
Q 012814           32 CPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGH---I  108 (456)
Q Consensus        32 ~~~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~---~  108 (456)
                      ++.+++|+++++||||+...++++..++||||+++++...++.+.-+..+.   |.|    +....|++.|...-.   +
T Consensus         2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lis---gs~----dav~~le~~l~~l~~~~~L   74 (176)
T COG2716           2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLIS---GSW----DAVTLLEATLPLLGAELDL   74 (176)
T ss_pred             CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEe---eCH----HHHHHHHHHhhcccccCCe
Confidence            356799999999999999999999999999999999999999888666664   443    577888988876422   1


Q ss_pred             CC-CcccCCcccccccCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec--CCceeEEEEEEEeCCCCCcCCC
Q 012814          109 TA-GAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGD  185 (456)
Q Consensus       109 ~~-~~~~~~~~~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T--~~~~~~d~F~v~~~~~g~~l~d  185 (456)
                      .. ..+..+..   ....+..+.++|.+.|||||+.++++.|..+|+||++....|  -.+.-..+|...- .-+-|.. 
T Consensus        75 ~v~m~rt~~~~---~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~i-t~~lPa~-  149 (176)
T COG2716          75 LVVMKRTGAHP---TPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQI-TARLPAN-  149 (176)
T ss_pred             EEEEeecCCCc---cCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhh-hccCCCc-
Confidence            10 01111111   134567899999999999999999999999999999999888  3344666788766 3455542 


Q ss_pred             hHHHHHHHHHHHHHhcCCC
Q 012814          186 QTRLSLMEEQLKNILRGCD  204 (456)
Q Consensus       186 ~~~~~~l~~~L~~~L~~~~  204 (456)
                       -....|+++|++ |++.+
T Consensus       150 -~~i~~l~~~f~a-l~~~L  166 (176)
T COG2716         150 -LSISALRDAFEA-LCDEL  166 (176)
T ss_pred             -CcHHHHHHHHHH-HHHhh
Confidence             456888998874 44433

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.32  E-value=2.1e-11  Score=132.75  Aligned_cols=145  Identities=14%  Similarity=0.112  Sum_probs=120.3

Q ss_pred             EEEEEEe-cCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCccc
Q 012814           36 TVVKVDS-VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKT  114 (456)
Q Consensus        36 ~~V~V~~-~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~~~~~  114 (456)
                      -.++|.. +|++|++.+++++|+.+|++|++|++.+ +|.++..|.|.+..|.+.++....+.++.++.+.+....   +
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  622 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPA---P  622 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCccc---C
Confidence            4677777 9999999999999999999999999999 888889999999999988887788888888888654321   2


Q ss_pred             CCcccccccCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHH
Q 012814          115 WPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEE  194 (456)
Q Consensus       115 ~~~~~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~  194 (456)
                      .+...+.+     .++++|.+.||||+|+.|+++|.    .|..|++.|.|..+.|.|++..+        . ...++++
T Consensus       623 ~~~~~~~~-----~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~~--------~-~r~~~~~  684 (693)
T PRK00227        623 GITATFWH-----GNILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKPG--------F-DRATVER  684 (693)
T ss_pred             CCCceEee-----CcEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecCc--------c-cHHHHHH
Confidence            22222222     28999999999999999999999    89999999999999999999852        1 2377888


Q ss_pred             HHHHHhcC
Q 012814          195 QLKNILRG  202 (456)
Q Consensus       195 ~L~~~L~~  202 (456)
                      ++..+|.+
T Consensus       685 ~~~~~~~~  692 (693)
T PRK00227        685 DVTRVLAG  692 (693)
T ss_pred             HHHHHHhc
Confidence            88877754

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.27  E-value=3.8e-11  Score=93.87  Aligned_cols=69  Identities=30%  Similarity=0.567  Sum_probs=62.8

Q ss_pred             EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCC
Q 012814           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK  105 (456)
Q Consensus        36 ~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~  105 (456)
                      ++|+|+++|+||+|++++++|+.+|+||++|.++|.+++.+|+|+|+++++.+. +++.+++|+++|...
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~~~   70 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIGPA   70 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhccc
Confidence            689999999999999999999999999999999998889999999999888876 557889999988753

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.25  E-value=5.3e-11  Score=93.06  Aligned_cols=70  Identities=70%  Similarity=1.039  Sum_probs=62.9

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHh
Q 012814          346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHT  415 (456)
Q Consensus       346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~  415 (456)
                      ++.++|.++||||+|++|+.+|+++|+||.+|++.|.++.+.|+|+|++.++.++++++.++++++|..+
T Consensus         1 gtri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l~~~   70 (72)
T cd04926           1 GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTIEAVRQEIGPA   70 (72)
T ss_pred             CeEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCHHHHHHHHHHhccc
Confidence            3679999999999999999999999999999999999889999999999988887656778888888744

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.22  E-value=7e-11  Score=90.62  Aligned_cols=52  Identities=15%  Similarity=0.148  Sum_probs=48.9

Q ss_pred             EEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEec-CCceEEEEEEEccCCC
Q 012814          269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD-GPHASQEYYIRHMDGC  320 (456)
Q Consensus       269 ~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~-~g~~~d~f~V~~~~g~  320 (456)
                      .+|.|+++||||||++++++|+.+|+||.+|+++|. +|+++|+|+|.+.+|.
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~   54 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG   54 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc
Confidence            478999999999999999999999999999999986 8999999999998875

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.19  E-value=2e-10  Score=88.81  Aligned_cols=69  Identities=51%  Similarity=0.787  Sum_probs=63.2

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHh
Q 012814          347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHT  415 (456)
Q Consensus       347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~  415 (456)
                      |.++|.+.||||+|++|+++|+++|++|.++++.|.++.+.|+|++++.+|.+.+.+..++|+++|.++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~   69 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEA   69 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence            578999999999999999999999999999999999889999999999999886666778899988765

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.19  E-value=1.9e-10  Score=88.87  Aligned_cols=70  Identities=36%  Similarity=0.566  Sum_probs=63.2

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHh
Q 012814          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (456)
Q Consensus       129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L  200 (456)
                      |.+.|.++|+||+|++|+++|+++|+||.++++.|.++.+.|+|++++ ..+.+. +.+++++++++|.+++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~-~~~~~~-~~~~~~~i~~~l~~~~   70 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTD-ADGQPL-DPERQEALRAALGEAL   70 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEEC-CCCCcC-CHHHHHHHHHHHHhhC
Confidence            578999999999999999999999999999999998889999999999 477774 5689999999987654

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.18  E-value=1.7e-10  Score=125.69  Aligned_cols=137  Identities=14%  Similarity=0.173  Sum_probs=111.4

Q ss_pred             EEEEEEe-eCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHh--hcC-C
Q 012814          269 SVVNVKC-RDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR--RRV-S  344 (456)
Q Consensus       269 ~~v~V~~-~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~--~r~-~  344 (456)
                      ..++|.. +|++|++.+++++|+.++++|..|++.+ +|..+..|.|....|.+.++....+.++.++...+.  ... |
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  625 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPAPGIT  625 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcccCCCC
Confidence            4677777 9999999999999999999999999999 888889999999999998776666777666654332  111 1


Q ss_pred             ----CceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhhh
Q 012814          345 ----EGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTML  417 (456)
Q Consensus       345 ----~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~~  417 (456)
                          .++++||++.||||+|+.|+++|.    .|..|+++|.|..++|.||+..  +     ....+++.++..+++
T Consensus       626 ~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~--~-----~~r~~~~~~~~~~~~  691 (693)
T PRK00227        626 ATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKP--G-----FDRATVERDVTRVLA  691 (693)
T ss_pred             ceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecC--c-----ccHHHHHHHHHHHHh
Confidence                358999999999999999999999    8999999999999999999961  1     123556666665543

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.87  E-value=2.4e-08  Score=76.69  Aligned_cols=70  Identities=40%  Similarity=0.621  Sum_probs=60.7

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHh
Q 012814          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (456)
Q Consensus       129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L  200 (456)
                      +.|.|.++|+||+|++|+++|+++|++|.++.+.+.++...++|++.++ .+.+ .+++++++++++|.+++
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~-~~~~-~~~~~~~~l~~~l~~~~   70 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDS-DGRP-LDPERIARLEEALEDAL   70 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECC-CCCc-CCHHHHHHHHHHHHhhC
Confidence            3688999999999999999999999999999999977799999999985 5555 34578999999887653

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.86  E-value=3e-08  Score=76.20  Aligned_cols=68  Identities=41%  Similarity=0.738  Sum_probs=60.2

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHh
Q 012814          348 SLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHT  415 (456)
Q Consensus       348 ~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~  415 (456)
                      .|.|.+.|+||+|++|+.+|+++|++|.++.+.+.++...++|++.+.++.+.++++.+.|++.|..+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~   69 (70)
T cd04873           2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARLEEALEDA   69 (70)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence            58899999999999999999999999999999998889999999998887775556778888888654

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.82  E-value=3.3e-08  Score=78.07  Aligned_cols=65  Identities=23%  Similarity=0.434  Sum_probs=56.1

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHh
Q 012814          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (456)
Q Consensus       128 ~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L  200 (456)
                      +.+|++.|+||||+++.|+++|+++||||.+.+..+.++++..++.++.+        ++..++|+.+|.+..
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l~   66 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEELA   66 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999985        567788888887653

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.76  E-value=2.4e-08  Score=73.47  Aligned_cols=67  Identities=22%  Similarity=0.394  Sum_probs=56.9

Q ss_pred             EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCC
Q 012814           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK  105 (456)
Q Consensus        36 ~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~  105 (456)
                      ++|+|.|||+.||-+++|+++.+.|++|..++++|+|.|++-+|+|......   ..-.|..|+++|.+.
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~---~~~rW~lLK~RL~~~   67 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPS---IKVRWDLLKNRLMSA   67 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCC---CcccHHHHHHHHHhc
Confidence            4799999999999999999999999999999999999999999999964322   123677788777653

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.64  E-value=3e-07  Score=72.57  Aligned_cols=64  Identities=17%  Similarity=0.132  Sum_probs=52.5

Q ss_pred             eEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHH
Q 012814          268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAA  338 (456)
Q Consensus       268 ~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~  338 (456)
                      +.+|++.|+||||++++++++|+++|+||.+.+..+.++.+.-.+.|.-+       +...++|+++|.+.
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~l   65 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-------EDSLERLESALEEL   65 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-------HHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-------cccHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999988877777543       45778888888764

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=98.58  E-value=8.6e-07  Score=73.92  Aligned_cols=114  Identities=23%  Similarity=0.264  Sum_probs=87.3

Q ss_pred             EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCcccC
Q 012814           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTW  115 (456)
Q Consensus        36 ~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~~~~~~  115 (456)
                      -+|+|+..|+||-|+..+.+|.+.|+||..-.|.-.+.+-+-.+.|..+           +.-.++|++.-     |.  
T Consensus         4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-----------d~A~~~Lee~g-----F~--   65 (142)
T COG4747           4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-----------DEAHSVLEEAG-----FT--   65 (142)
T ss_pred             eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-----------HHHHHHHHHCC-----cE--
Confidence            4799999999999999999999999999988887777777766666533           23355665531     11  


Q ss_pred             CcccccccCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC-ceeEEEEEEEe
Q 012814          116 PSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND  176 (456)
Q Consensus       116 ~~~~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~-~~~~d~F~v~~  176 (456)
                        +       ...-++-|...|+||=|+.|+.+|.++++|+.++-.++.. ..+.-+|.+.+
T Consensus        66 --V-------r~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed  118 (142)
T COG4747          66 --V-------RETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED  118 (142)
T ss_pred             --E-------EeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH
Confidence              1       1255788999999999999999999999999999998844 44554444433

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.54  E-value=2.3e-07  Score=72.98  Aligned_cols=65  Identities=22%  Similarity=0.226  Sum_probs=54.0

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhc
Q 012814          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR  201 (456)
Q Consensus       130 ~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~  201 (456)
                      +++|.|+|||||+++|+++|+++||||.+.+..+.++.+..+|.+..| .+.      ..+.++++|.....
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p-~~~------~~~~l~~~l~~l~~   65 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP-DSA------DSEALLKDLLFKAH   65 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC-CCC------CHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999889988875 221      24777777775443

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.50  E-value=6.8e-07  Score=70.70  Aligned_cols=63  Identities=22%  Similarity=0.416  Sum_probs=52.6

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (456)
Q Consensus       128 ~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~  198 (456)
                      +++|++.|+|||||++.|+++|+++|+||.+.+.++.++++.-+..+..+  .      ...+.|++.|..
T Consensus         1 ~~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~--~------~~~~~l~~~l~~   63 (77)
T cd04893           1 HLVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS--W------DAIAKLEAALPG   63 (77)
T ss_pred             CEEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec--c------ccHHHHHHHHHH
Confidence            36899999999999999999999999999999999988888777777663  1      134777777765

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.41  E-value=1.5e-06  Score=68.72  Aligned_cols=48  Identities=23%  Similarity=0.263  Sum_probs=43.7

Q ss_pred             EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEe
Q 012814           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVID   83 (456)
Q Consensus        36 ~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~   83 (456)
                      +.|++.||||||+++.++++|+++|+||.+++.++.++++.-.+.+..
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~   49 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEG   49 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEe
Confidence            678999999999999999999999999999999999888876666653

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.36  E-value=3.7e-06  Score=63.58  Aligned_cols=61  Identities=25%  Similarity=0.449  Sum_probs=47.5

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCc--eeEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNR--RIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (456)
Q Consensus       129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~--~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~  198 (456)
                      |.|.|.++||||+|++|+.+|+++|+||..+.+.+.++  ....++...+         ....+.+.++|++
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~   63 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---------EEDLEKLLEELEA   63 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---------GHGHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---------CCCHHHHHHHHHc
Confidence            57899999999999999999999999999999999665  4444444444         2445666666654

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=98.35  E-value=1.7e-05  Score=66.27  Aligned_cols=126  Identities=15%  Similarity=0.149  Sum_probs=90.8

Q ss_pred             EEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhcCCCceEE
Q 012814          270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSL  349 (456)
Q Consensus       270 ~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~r~~~~~~l  349 (456)
                      +|+|+..|+||-|..++..|.++|+||....+.-++++-+-.+.|..+       ++.    .+.|+++- --+....++
T Consensus         5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-------d~A----~~~Lee~g-F~Vr~~dVl   72 (142)
T COG4747           5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-------DEA----HSVLEEAG-FTVRETDVL   72 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-------HHH----HHHHHHCC-cEEEeeeEE
Confidence            689999999999999999999999999999998888887767777321       122    23333310 001224578


Q ss_pred             EEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCc-eeeeEEEEEeCCCCCCChHHHHHHHHHHHHhhh
Q 012814          350 ELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGE-QAVNVFYVRDASGNPVDMKTIEALRKEIGHTML  417 (456)
Q Consensus       350 ev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~-~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~~  417 (456)
                      -|...|+||-|+.|+.+|.++++|+.++..-+... ++.=.|.+          +.+++...+|.++..
T Consensus        73 aVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~----------ed~d~~~~aLed~gi  131 (142)
T COG4747          73 AVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRV----------EDIDRAIKALEDAGI  131 (142)
T ss_pred             EEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEh----------hHHHHHHHHHHHcCC
Confidence            88899999999999999999999999988766543 34333332          234556666666655

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.34  E-value=1.9e-06  Score=67.76  Aligned_cols=62  Identities=16%  Similarity=0.134  Sum_probs=49.5

Q ss_pred             EEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHH
Q 012814          270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEA  337 (456)
Q Consensus       270 ~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~  337 (456)
                      +|+|.|+||||++++++++|+++|+||.+.+..+.++.+.-.+.+..+.+.      ..+.|++.|+.
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~------~~~~l~~~l~~   62 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSA------DSEALLKDLLF   62 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCC------CHHHHHHHHHH
Confidence            378999999999999999999999999999988888877767777654442      24555565554

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.28  E-value=7.3e-06  Score=61.94  Aligned_cols=39  Identities=26%  Similarity=0.491  Sum_probs=36.7

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCce
Q 012814          347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQ  385 (456)
Q Consensus       347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~  385 (456)
                      |.|.|.++||||+|++|+++|+++|+||..+.+.+.++.
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~   39 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG   39 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC
Confidence            578999999999999999999999999999999998875

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.21  E-value=4e-06  Score=68.01  Aligned_cols=66  Identities=20%  Similarity=0.349  Sum_probs=54.1

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHh
Q 012814          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (456)
Q Consensus       129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L  200 (456)
                      .++++.|+||||++++|+++|+++|+||.+.+..+.++.+.-.+.+..|  +..    ...+.++++|....
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~--~~~----~~~~~L~~~l~~l~   67 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS--ESN----LDFAELQEELEELG   67 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC--CCC----CCHHHHHHHHHHHH
Confidence            5799999999999999999999999999999999988888878888774  211    12477888777544

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07431 aspartate kinase; Provisional

Probab=98.13  E-value=0.0017  Score=70.86  Aligned_cols=262  Identities=13%  Similarity=0.153  Sum_probs=148.6

Q ss_pred             ecCCcchHHHHHHHHhhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCcccCCcccc
Q 012814           42 SVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV  120 (456)
Q Consensus        42 ~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~~~~~~~~~~v  120 (456)
                      .++.+|+++++...|+++|+||.--.... ..+..--.|.+...+-     ....+.|++ |...+..         .. 
T Consensus       278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~-----~~~~~~l~~-l~~~~~~---------~~-  341 (587)
T PRK07431        278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENEL-----KKAEAVAEA-IAPALGG---------AE-  341 (587)
T ss_pred             CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHH-----HHHHHHHHH-HHHHcCC---------Cc-
Confidence            47889999999999999999998665543 2222222466643110     111222221 2211110         01 


Q ss_pred             cccCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814          121 GVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (456)
Q Consensus       121 ~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~  197 (456)
                       ..-..+...|.+.|.   ++||+++++..+|++.|++|....  +  ....-.|.+..          ....+.-+.|+
T Consensus       342 -i~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s--Se~~Is~vv~~----------~d~~~av~~Lh  406 (587)
T PRK07431        342 -VLVETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T--SEVKVSCVIDA----------EDGDKALRAVC  406 (587)
T ss_pred             -EEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c--CCCEEEEEEcH----------HHHHHHHHHHH
Confidence             112345778888886   799999999999999999996655  2  22333344433          23455556666


Q ss_pred             HHhcCCCCcccccccceeecccccCchhHHHHhhhcCccccCCCCCcCccCCCCCCCCCEEEEEecCCCCeEEEEEE-ee
Q 012814          198 NILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVK-CR  276 (456)
Q Consensus       198 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~n~~~~~~~~v~V~-~~  276 (456)
                      +.+.-+..                  ...+.+++-                  .....+..-+.  ...+...|++. .+
T Consensus       407 ~~f~~~~~------------------~~~~~~~~~------------------~~~~~~v~gIa--~~~~~~~i~l~~~~  448 (587)
T PRK07431        407 EAFELEDS------------------QIEINPTAS------------------GQDEPEVRGVA--LDRNQAQLAIRNVP  448 (587)
T ss_pred             HHhccCCc------------------ccccCcccc------------------CCCCCcEEEEE--ccCCEEEEEECCCC
Confidence            66644321                  001111100                  01111111121  12234445554 67


Q ss_pred             CchhHHHHHHHHHHhCCcEEEEEEEEec-C--CceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh-c---CCCceEE
Q 012814          277 DRAKLMFDIVCTLTDMQYVVFHAAISSD-G--PHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR-R---VSEGLSL  349 (456)
Q Consensus       277 Dr~gll~~i~~~L~~~~l~I~~a~i~t~-~--g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~-r---~~~~~~l  349 (456)
                      +++|+++++...|+++|++|..-..... +  |..--.|.+...      +-.....+.+.|...+.. .   ...-..|
T Consensus       449 ~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~------~~~~~~~~l~~l~~~~~~~~i~~~~~va~V  522 (587)
T PRK07431        449 DRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPKE------DREAAQKVLRELAKQLPGAEVEDGPAIAKV  522 (587)
T ss_pred             CCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHH------HHHHHHHHHHHHHHhcCCceEEEeCCeEEE
Confidence            8899999999999999999987755322 2  222223555321      111122222223222211 0   1234678


Q ss_pred             EEEeC---CCcchHHHHHHHHHHCCceEEEEE
Q 012814          350 ELCAK---DRVGLLSEVTRILRENGLSVTRAG  378 (456)
Q Consensus       350 ev~~~---DrpGlL~~It~~l~~~gi~I~~a~  378 (456)
                      .+.|.   .+||+++++.++|.+.|++|....
T Consensus       523 SvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~  554 (587)
T PRK07431        523 SIVGAGMPGTPGVAARMFRALADAGINIEMIA  554 (587)
T ss_pred             EEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence            88886   889999999999999999997665

>PRK00194 hypothetical protein; Validated

Probab=98.12  E-value=8.7e-06  Score=66.18  Aligned_cols=65  Identities=22%  Similarity=0.385  Sum_probs=52.1

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (456)
Q Consensus       128 ~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~  198 (456)
                      .+++++.|+||||++++|+++|+++|+||.+.+..+.++.+.-.+.+..+  +.+.    ..+.+++.|..
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~--~~~~----~~~~l~~~l~~   67 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS--ESKK----DFAELKEELEE   67 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec--CCCC----CHHHHHHHHHH
Confidence            68999999999999999999999999999999999988877776666653  2121    13677777765

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.07  E-value=1.3e-05  Score=59.27  Aligned_cols=68  Identities=18%  Similarity=0.312  Sum_probs=59.5

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHh
Q 012814          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (456)
Q Consensus       129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L  200 (456)
                      ++|+|.|+|+.||-.++++++.++|++|..+.+.|.|.-..-+|+|...  ..++  +-+|..|+++|.++.
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~--~~~~--~~rW~lLK~RL~~~C   68 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR--PPSI--KVRWDLLKNRLMSAC   68 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC--CCCC--cccHHHHHHHHHhcC
Confidence            4799999999999999999999999999999999999999999999873  2333  468999999887653

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.07  E-value=1.9e-05  Score=61.70  Aligned_cols=65  Identities=17%  Similarity=0.241  Sum_probs=45.1

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC--CceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHh
Q 012814          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (456)
Q Consensus       130 ~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~--~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L  200 (456)
                      +|++.|+|||||+++|+++|+++|+||.+.+..+.  ++...-.+.+..|  ..+    ...+.++++|....
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~--~~~----~~~~~l~~~l~~l~   67 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE--GFD----LSREALEAAFAPVA   67 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC--CCC----CCHHHHHHHHHHHH
Confidence            47899999999999999999999999999999973  2322222223331  100    12577887776533

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.04  E-value=2.1e-05  Score=62.40  Aligned_cols=62  Identities=24%  Similarity=0.403  Sum_probs=47.5

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC------ceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN------RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (456)
Q Consensus       130 ~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~------~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~  198 (456)
                      ++++.|+|+||++++|+++|+++|+||.+.+..+.+      +.+.-.+.+..|  . .    ....+++.+|..
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p--~-~----~~~~~l~~~l~~   68 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP--A-G----TDLDALREELEE   68 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC--C-C----CCHHHHHHHHHH
Confidence            478999999999999999999999999999999966      445555555553  1 1    124677777765

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.02  E-value=1.3e-05  Score=62.65  Aligned_cols=66  Identities=21%  Similarity=0.205  Sum_probs=46.6

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHh
Q 012814          348 SLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHT  415 (456)
Q Consensus       348 ~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~  415 (456)
                      +|.+.|+||||++++||++|+++|+||...+..+..  ....|++.-.-..|-.+-..++|+++|.+.
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l   66 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDP--DSGRFFMRVEFELEGFDLSREALEAAFAPV   66 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecC--CCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence            378999999999999999999999999999988742  223577743322231111356677666654

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.01  E-value=1.6e-05  Score=64.40  Aligned_cols=49  Identities=22%  Similarity=0.285  Sum_probs=43.7

Q ss_pred             EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeC
Q 012814           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQ   84 (456)
Q Consensus        36 ~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~   84 (456)
                      ..|++.|+|+||++++++++|+++|+||.+.+.++.++.+.-.+.+.-+
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~   50 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS   50 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC
Confidence            5789999999999999999999999999999999988877767777644

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.94  E-value=5.1e-05  Score=60.14  Aligned_cols=48  Identities=25%  Similarity=0.288  Sum_probs=41.3

Q ss_pred             EEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeC------CEEEEEEEEEeC
Q 012814           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDG------GWFMDVFHVIDQ   84 (456)
Q Consensus        37 ~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~------g~~~d~f~V~~~   84 (456)
                      +|+|.|+|+||++++|+++|+++|+||.+.+..+.+      +.+.-.+.+.-+
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p   54 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP   54 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC
Confidence            478999999999999999999999999999999865      566656666654

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>PRK00194 hypothetical protein; Validated

Probab=97.91  E-value=3.7e-05  Score=62.44  Aligned_cols=50  Identities=24%  Similarity=0.298  Sum_probs=44.0

Q ss_pred             eEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeC
Q 012814           35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQ   84 (456)
Q Consensus        35 ~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~   84 (456)
                      .+.|+|.|+|+||++++++++|+++|+||.+.+..+.++.+.-.+.+.-+
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~   52 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS   52 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec
Confidence            57899999999999999999999999999999999888887766666533

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.86  E-value=2.3e-05  Score=62.80  Aligned_cols=68  Identities=19%  Similarity=0.307  Sum_probs=55.3

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhc
Q 012814          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR  201 (456)
Q Consensus       128 ~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~  201 (456)
                      ..+|+|.|.||||+.+.|+++|+++|+||.+....-..+.+..++.|.-+  ..    ......+++.|.....
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~--~~----~~d~~~lr~~l~~~~~   70 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS--KE----VVDFAALRDELAAEGK   70 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC--hH----hccHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999988899999988888764  11    1234667776665544

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.77  E-value=0.0005  Score=67.82  Aligned_cols=48  Identities=13%  Similarity=0.192  Sum_probs=42.2

Q ss_pred             EEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEe--CCEEEEEEEEEeC
Q 012814           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD--GGWFMDVFHVIDQ   84 (456)
Q Consensus        37 ~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~--~g~~~d~f~V~~~   84 (456)
                      .|+|.|+|+||+.+.++++|+++|+||.+.+.+.+  +|++...+.+.-+
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~   51 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE   51 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC
Confidence            58999999999999999999999999999999984  4787767777644

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.74  E-value=3.9e-05  Score=58.99  Aligned_cols=68  Identities=15%  Similarity=0.227  Sum_probs=51.4

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeec--Cceeee--EEEEEeCCCCCCC-hHHHHHHHHHHHHhh
Q 012814          348 SLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTV--GEQAVN--VFYVRDASGNPVD-MKTIEALRKEIGHTM  416 (456)
Q Consensus       348 ~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~--g~~~~d--~F~v~d~~g~~l~-~~~~~~L~~~l~~~~  416 (456)
                      .||++|..||-++||||-+|+.+|+.|++|+|..+  +++.+.  .|.+.+..+ .++ +....++.+.+...+
T Consensus         2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~-~~~~~~~r~~i~drv~~~l   74 (77)
T cd04898           2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDR-LKLGGRQRSKVVDRVTKTL   74 (77)
T ss_pred             cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCc-cccchHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999865  566555  466655533 354 344566666666553

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.71  E-value=0.00062  Score=67.43  Aligned_cols=104  Identities=6%  Similarity=0.024  Sum_probs=63.3

Q ss_pred             eEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEe--cCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHH---Hh--
Q 012814          268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISS--DGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAA---IR--  340 (456)
Q Consensus       268 ~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t--~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~---l~--  340 (456)
                      ..+|+|.|+||||+++.+++.|+++|+||.+.+.++  ..+.+.-.+.+.+......    ..+.|+++|.+.   +.  
T Consensus         9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~----~~~~l~~~l~~l~~~l~l~   84 (289)
T PRK13010          9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAA----SVDTFRQEFQPVAEKFDMQ   84 (289)
T ss_pred             CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCC----CHHHHHHHHHHHHHHhCCe
Confidence            457999999999999999999999999999999973  3343332333332211111    244555555543   21  


Q ss_pred             ---hcCCCceEEEEEeCCCcchHHHHHHHHHHCCceEE
Q 012814          341 ---RRVSEGLSLELCAKDRVGLLSEVTRILRENGLSVT  375 (456)
Q Consensus       341 ---~r~~~~~~lev~~~DrpGlL~~It~~l~~~gi~I~  375 (456)
                         +...+...|-|-+-.+..-|.+|-.+...-.++.+
T Consensus        85 ~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~  122 (289)
T PRK13010         85 WAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMD  122 (289)
T ss_pred             EEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcE
Confidence               11123334444444555567777777766655443

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.71  E-value=0.00053  Score=67.91  Aligned_cols=37  Identities=19%  Similarity=0.228  Sum_probs=34.4

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE
Q 012814           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS   70 (456)
Q Consensus        34 ~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t   70 (456)
                      ...+|+|.|+||||+.+.++++|+++|+||.+.+.++
T Consensus         8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~   44 (289)
T PRK13010          8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFD   44 (289)
T ss_pred             cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEeccccc
Confidence            3568999999999999999999999999999999983

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.70  E-value=0.00028  Score=55.89  Aligned_cols=64  Identities=23%  Similarity=0.375  Sum_probs=49.3

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC--CceeEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (456)
Q Consensus       127 ~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~--~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~  197 (456)
                      -.+.|.|.+.||||+|++|+.++++.|+||..+.+.+.  ++.+.-.|.+.-.       |.+++..+-+.|+
T Consensus         5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-------d~~~L~~ii~~L~   70 (80)
T PF13291_consen    5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-------DLEHLNQIIRKLR   70 (80)
T ss_dssp             EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-------SHHHHHHHHHHHC
T ss_pred             EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-------CHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999994  5677777777663       4566666655543

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.67  E-value=0.00017  Score=71.34  Aligned_cols=69  Identities=17%  Similarity=0.240  Sum_probs=53.2

Q ss_pred             CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec--CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHh
Q 012814          126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (456)
Q Consensus       126 ~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T--~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L  200 (456)
                      ...++++|.|+|||||++.|+++|+++|+||.+.+..+  .++.+..++.+...  ..+    ...+.|+++|....
T Consensus         4 ~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~--~~~----~~~~~L~~~L~~l~   74 (286)
T PRK06027          4 MQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGD--GLI----FNLETLRADFAALA   74 (286)
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeC--CCC----CCHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999  77765555555441  112    22678888887433

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.66  E-value=0.001  Score=65.64  Aligned_cols=101  Identities=11%  Similarity=0.108  Sum_probs=67.3

Q ss_pred             EEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEec--CCceEEEEEEEccCCCCCCCHHHHHHHHHHHHH----HHh---
Q 012814          270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD--GPHASQEYYIRHMDGCILDTEGEKERVIKCLEA----AIR---  340 (456)
Q Consensus       270 ~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~--~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~----~l~---  340 (456)
                      +|+|.||||||+++.+++.|+++|+||.+.+.+..  +|++.-.+.+..+ +...    ..+.|+++|++    .+.   
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~----~~~~l~~~l~~~~~~~~~l~i   76 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRL----EESSLLAAFKSALAEKFEMTW   76 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCC----CHHHHHHHHHHHHHHHhCCEE
Confidence            58999999999999999999999999999999985  4766655555433 2112    24455555555    221   


Q ss_pred             --hcCCCceEEEEEeCCCcchHHHHHHHHHHCCceEE
Q 012814          341 --RRVSEGLSLELCAKDRVGLLSEVTRILRENGLSVT  375 (456)
Q Consensus       341 --~r~~~~~~lev~~~DrpGlL~~It~~l~~~gi~I~  375 (456)
                        ....+...|-|-+-.+---|.+|......-.++++
T Consensus        77 ~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~  113 (280)
T TIGR00655        77 ELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAE  113 (280)
T ss_pred             EEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcE
Confidence              00122334555555556678888888876666544

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.64  E-value=6.2e-05  Score=60.32  Aligned_cols=48  Identities=10%  Similarity=0.127  Sum_probs=41.5

Q ss_pred             eEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEE
Q 012814          268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIR  315 (456)
Q Consensus       268 ~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~  315 (456)
                      ..+|+|.|+||||+.++++++|+++|+||.+-...-.+|++.-.+.|.
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~   50 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVD   50 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEc
Confidence            357999999999999999999999999999887766788877666663

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.56  E-value=0.0019  Score=64.07  Aligned_cols=102  Identities=15%  Similarity=0.092  Sum_probs=64.4

Q ss_pred             CeEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEe--cCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh---
Q 012814          267 GYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISS--DGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR---  341 (456)
Q Consensus       267 ~~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t--~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~---  341 (456)
                      ..++|+|.|+||||++++++++|+++|+||.+.+..+  .+|.+.-.+.+.. +..+    ...+.|+++|++.-..   
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~-~~~~----~~~~~L~~~L~~l~~~l~l   79 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG-DGLI----FNLETLRADFAALAEEFEM   79 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe-CCCC----CCHHHHHHHHHHHHHHhCC
Confidence            4578999999999999999999999999999999999  6776554444432 1111    1256666666643211   


Q ss_pred             -----cCCCceEEEEEeCCCcchHHHHHHHHHHCCce
Q 012814          342 -----RVSEGLSLELCAKDRVGLLSEVTRILRENGLS  373 (456)
Q Consensus       342 -----r~~~~~~lev~~~DrpGlL~~It~~l~~~gi~  373 (456)
                           ...+...|-|-+-.+---|..|..+...-.++
T Consensus        80 ~i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~  116 (286)
T PRK06027         80 DWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELP  116 (286)
T ss_pred             EEEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCC
Confidence                 11122333344444444556666555554443

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.52  E-value=0.0022  Score=63.46  Aligned_cols=106  Identities=10%  Similarity=0.090  Sum_probs=69.3

Q ss_pred             eEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEec--CCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHH---Hh--
Q 012814          268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD--GPHASQEYYIRHMDGCILDTEGEKERVIKCLEAA---IR--  340 (456)
Q Consensus       268 ~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~--~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~---l~--  340 (456)
                      .++|+|.|+||||++++++++|+++|+||.+.+..+.  ++.+.-.+.+..+.+.      ..+.|+++|++.   +.  
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~------~~~~L~~~L~~l~~~l~l~   80 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL------DEDALRAGFAPIAARFGMQ   80 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC------CHHHHHHHHHHHHHHhCcE
Confidence            3579999999999999999999999999999999864  4555544555433332      245566555543   21  


Q ss_pred             ---hcCCCceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEE
Q 012814          341 ---RRVSEGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGV  379 (456)
Q Consensus       341 ---~r~~~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i  379 (456)
                         +...+...|-|-+-.+.--|.++..++..-.++.+-+-+
T Consensus        81 i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~v  122 (286)
T PRK13011         81 WELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGV  122 (286)
T ss_pred             EEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEE
Confidence               111223345555555666777888777777665444443

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.45  E-value=0.0015  Score=51.69  Aligned_cols=64  Identities=19%  Similarity=0.296  Sum_probs=50.4

Q ss_pred             eEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE--eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCC
Q 012814           35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP  104 (456)
Q Consensus        35 ~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t--~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~  104 (456)
                      .+.|.|.+.||||+|++|+.++++.|+||.+..+.+  .++.+.-.|.+.-.      +.+.++.|-+.|..
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~------d~~~L~~ii~~L~~   71 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK------DLEHLNQIIRKLRQ   71 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES------SHHHHHHHHHHHCT
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC------CHHHHHHHHHHHHC
Confidence            357999999999999999999999999999999998  47888777777632      23566777777765

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.44  E-value=0.0012  Score=51.12  Aligned_cols=60  Identities=12%  Similarity=0.245  Sum_probs=46.7

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC-CceeEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (456)
Q Consensus       131 i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~-~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~  197 (456)
                      |.|.+.||||+|++|+.++++.|+||......+. .+.+...|.+.-.       +.++++++.+.|+
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-------~~~~l~~i~~~L~   62 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-------SEEHAETIVAAVR   62 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-------CHHHHHHHHHHHh
Confidence            6889999999999999999999999999888764 4566555666542       3466677766655

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.37  E-value=0.0022  Score=63.52  Aligned_cols=52  Identities=19%  Similarity=0.230  Sum_probs=43.2

Q ss_pred             eEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE--eCCEEEEEEEEEeCCC
Q 012814           35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQQG   86 (456)
Q Consensus        35 ~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t--~~g~~~d~f~V~~~~g   86 (456)
                      ...|+|.|+||||++++++++|+++|+||.+.+.++  .++.+.-.+.+..+.+
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~   60 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEG   60 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCC
Confidence            578999999999999999999999999999999986  4456665666654444

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=97.36  E-value=0.00061  Score=65.28  Aligned_cols=49  Identities=18%  Similarity=0.283  Sum_probs=41.4

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEe--CCEEEEEEEEE
Q 012814           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD--GGWFMDVFHVI   82 (456)
Q Consensus        34 ~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~--~g~~~d~f~V~   82 (456)
                      ...++++.|||+||+.+.|++.|+.+|+||.++..+++  .|+++......
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~   56 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFE   56 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEe
Confidence            56899999999999999999999999999999999973  56666443333

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=97.16  E-value=0.0023  Score=58.49  Aligned_cols=66  Identities=20%  Similarity=0.392  Sum_probs=48.4

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhh
Q 012814          347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTM  416 (456)
Q Consensus       347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~  416 (456)
                      ..+.+.+.|+||+|++|+.+|+++|+||.+..+..........+-+.-+ +   ++..+++|+++|.+.+
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~-~---~~~~ieqL~kQL~KLi   68 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP-G---DDRTIEQLTKQLYKLV   68 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE-C---CHHHHHHHHHHHHHHh
Confidence            4689999999999999999999999999999996643333334444322 2   2234678888887753

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.14  E-value=0.0039  Score=47.33  Aligned_cols=60  Identities=18%  Similarity=0.227  Sum_probs=41.5

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC-----CceeEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-----NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (456)
Q Consensus       131 i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~-----~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~  197 (456)
                      +.|.++|+||+|++|+.+|+++|+||.+......     .+.....|.+...       +.++++.+.+.|.
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~-------~~~~l~~l~~~l~   65 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-------GAEHIEEIIAALR   65 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC-------CHHHHHHHHHHHH
Confidence            3578899999999999999999999998886653     2334433444332       2345556655554

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.13  E-value=0.0046  Score=47.83  Aligned_cols=61  Identities=15%  Similarity=0.190  Sum_probs=47.9

Q ss_pred             EEEEecCCcchHHHHHHHHhhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCC
Q 012814           38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP  104 (456)
Q Consensus        38 V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~  104 (456)
                      |.|.++|+||+|++|+.++++.|.||.+....+ .++++...|.+.-.      +.+.++.+.+.|+.
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~------~~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP------SEEHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC------CHHHHHHHHHHHhc
Confidence            678999999999999999999999999888876 45777666666532      23466777777765

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=97.10  E-value=0.0013  Score=63.13  Aligned_cols=67  Identities=15%  Similarity=0.243  Sum_probs=47.6

Q ss_pred             CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC--CceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814          126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (456)
Q Consensus       126 ~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~--~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~  198 (456)
                      ...+++++.|+|+|||++.|++.|+++||||.++.-++.  ++++..--....  .+.+.    ..+.++.+|..
T Consensus         5 ~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~--~~~~~----~~~~l~~~f~~   73 (287)
T COG0788           5 PDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEG--EGGPL----DREALRAAFAP   73 (287)
T ss_pred             ccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEec--CCCcc----cHHHHHHHHHH
Confidence            367899999999999999999999999999999999962  333322222222  13332    24667776665

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.09  E-value=0.0032  Score=49.10  Aligned_cols=58  Identities=19%  Similarity=0.309  Sum_probs=42.7

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (456)
Q Consensus       130 ~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~  197 (456)
                      .|.|.+.||+|+|++|+.++++.|+||.+..+.+. +...  |.+.-       .+.+++..+-++|+
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~--l~i~v-------~~~~~L~~li~~L~   59 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIY--LNFPT-------IEFEKLQTLMPEIR   59 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEE--EEeEe-------cCHHHHHHHHHHHh
Confidence            47899999999999999999999999999999876 3322  22222       13456666665554

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.04  E-value=0.0027  Score=49.51  Aligned_cols=35  Identities=26%  Similarity=0.483  Sum_probs=32.6

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeec
Q 012814          348 SLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTV  382 (456)
Q Consensus       348 ~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~  382 (456)
                      .|+|.+.||+|+|++|+.+|++.|++|.+..+.+.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~   36 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK   36 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence            37899999999999999999999999999998775

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=97.02  E-value=0.0058  Score=46.43  Aligned_cols=44  Identities=23%  Similarity=0.425  Sum_probs=37.3

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEE
Q 012814          348 SLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVR  393 (456)
Q Consensus       348 ~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~  393 (456)
                      .+.|..+|+||.|++|+++|.++|+||.+..+...++.  .+|.+.
T Consensus         3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~   46 (66)
T cd04908           3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI   46 (66)
T ss_pred             EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence            57889999999999999999999999999998776653  555553

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=97.01  E-value=0.0041  Score=47.25  Aligned_cols=46  Identities=15%  Similarity=0.296  Sum_probs=37.9

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEe
Q 012814          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (456)
Q Consensus       129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~  176 (456)
                      ..+.|..+|+||.|++|+..|+++|+||.+..+...++.  .++.+..
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~   47 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV   47 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence            367889999999999999999999999999998776554  4455443

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=97.00  E-value=0.0062  Score=48.19  Aligned_cols=66  Identities=17%  Similarity=0.313  Sum_probs=46.1

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCce-eeeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814          347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQ-AVNVFYVRDASGNPVDMKTIEALRKEIGH  414 (456)
Q Consensus       347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~-~~d~F~v~d~~g~~l~~~~~~~L~~~l~~  414 (456)
                      +.+.+...|+||.|++|...|+++|+||.+......+.. ..=.|||. .++. ........+-+.|..
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd-~~~~-~~~~~~~~~l~~l~~   68 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFID-FEGH-IEDPNVAEALEELKR   68 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEE-EECC-CCCHHHHHHHHHHHH
Confidence            457778899999999999999999999999987766543 44477774 3353 223334444444444

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=96.99  E-value=0.0062  Score=47.86  Aligned_cols=63  Identities=16%  Similarity=0.264  Sum_probs=46.0

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (456)
Q Consensus       129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~  198 (456)
                      ..|.+...|+||.|++|+++|+..|.||.+..+.- ......-+..+..+       ++...+.+...|.+
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~-------~~~~i~qi~kQL~K   66 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC-------TENEATLLVSQLKK   66 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC-------CHHHHHHHHHHHhC
Confidence            57899999999999999999999999999999874 44444444333332       23455666666654

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.98  E-value=0.0046  Score=56.54  Aligned_cols=65  Identities=18%  Similarity=0.346  Sum_probs=47.9

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec--CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhc
Q 012814          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR  201 (456)
Q Consensus       129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T--~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~  201 (456)
                      ..+.+.+.|+||+|++|+++|+.+|+||.+..+..  ..+....++.+..        +....+.|+..|.+...
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~--------~~~~ieqL~kQL~KLid   69 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG--------DDRTIEQLTKQLYKLVN   69 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC--------CHHHHHHHHHHHHHHhH
Confidence            57899999999999999999999999999999976  3333433333333        12336778877776443

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=96.98  E-value=0.0046  Score=48.61  Aligned_cols=65  Identities=9%  Similarity=0.167  Sum_probs=47.8

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHh
Q 012814          347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHT  415 (456)
Q Consensus       347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~  415 (456)
                      +.+.+...|+||+|++|+.+|+..|.||.+..+.-..+...-.+-++-. |   ++..+++|..+|.+.
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~-~---~~~~i~qi~kQL~KL   67 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV-C---TENEATLLVSQLKKL   67 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE-C---CHHHHHHHHHHHhCC
Confidence            4688999999999999999999999999999987444443333333211 2   235678888888764

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.97  E-value=0.0036  Score=49.95  Aligned_cols=67  Identities=15%  Similarity=0.200  Sum_probs=51.4

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhh
Q 012814          347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTM  416 (456)
Q Consensus       347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~  416 (456)
                      ..+.+...|+||+|++|+..|++.|.||.+..+..........+-+.-..|   ++..++++..+|.+.+
T Consensus         3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~---d~~~ieqI~kQL~Kli   69 (84)
T PRK13562          3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQ---DDTSLHILIKKLKQQI   69 (84)
T ss_pred             EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCC---CHHHHHHHHHHHhCCc
Confidence            358888999999999999999999999999999776666555554432213   2356788888887753

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.97  E-value=0.0059  Score=46.58  Aligned_cols=48  Identities=13%  Similarity=0.216  Sum_probs=37.8

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC-c-eeEEEEEEEe
Q 012814          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-R-RIACVLYVND  176 (456)
Q Consensus       129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~-~-~~~d~F~v~~  176 (456)
                      +.+.+..+|+||.|+++++.|+++|+||.+....... + .....|.+..
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~   51 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKT   51 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECC
Confidence            5688999999999999999999999999998876642 2 3334555544

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.95  E-value=0.0057  Score=46.68  Aligned_cols=63  Identities=17%  Similarity=0.276  Sum_probs=45.7

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecC-c-eeeeEEEEEeCCCCCCChHHHHHHHHHHHHhh
Q 012814          347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVG-E-QAVNVFYVRDASGNPVDMKTIEALRKEIGHTM  416 (456)
Q Consensus       347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g-~-~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~  416 (456)
                      +.+.+..+|+||.|++|++.|+++|++|.+....... . ...-.|.++..       ...+.+.+.|.++.
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~-------~~~~~~~~~L~~~G   66 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQ-------EDRERAKEILKEAG   66 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCH-------HHHHHHHHHHHHcC
Confidence            4578899999999999999999999999988776652 2 33335555311       24567777776654

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=96.94  E-value=0.0026  Score=46.58  Aligned_cols=46  Identities=22%  Similarity=0.345  Sum_probs=39.1

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC-ceeEEEEEEEe
Q 012814          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND  176 (456)
Q Consensus       131 i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~-~~~~d~F~v~~  176 (456)
                      +.+...|+||.|++++..|.++|+||.+..+...+ +.+.-.|.+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            46789999999999999999999999999988755 66776666655

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.91  E-value=0.0081  Score=46.58  Aligned_cols=61  Identities=21%  Similarity=0.356  Sum_probs=45.7

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC-CceeEEEEEEEeCCCCCcCCChH-HHHHHHHHHH
Q 012814          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVNDDTTCRAVGDQT-RLSLMEEQLK  197 (456)
Q Consensus       130 ~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~-~~~~~d~F~v~~~~~g~~l~d~~-~~~~l~~~L~  197 (456)
                      .+.+.+.|+||+|++|+..|+++|+||......+. ++.+.-.|.+...       +.+ .+.++-++|+
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-------~~~~~l~~l~~~L~   64 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-------TMNGDIDELLEELR   64 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-------chHHHHHHHHHHHh
Confidence            57899999999999999999999999999987663 4555555666442       223 5566666654

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07431 aspartate kinase; Provisional

Probab=96.87  E-value=0.53  Score=51.49  Aligned_cols=221  Identities=12%  Similarity=0.127  Sum_probs=126.6

Q ss_pred             CCeEEEEEEec---CCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCC
Q 012814           33 PECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHIT  109 (456)
Q Consensus        33 ~~~~~V~V~~~---DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~  109 (456)
                      .+...|+|.+.   +.+|+.+++..+|.+.|++|....   ..+..+ .|.|...+     .++..+.|++.+.......
T Consensus       346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~---sSe~~I-s~vv~~~d-----~~~av~~Lh~~f~~~~~~~  416 (587)
T PRK07431        346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS---TSEVKV-SCVIDAED-----GDKALRAVCEAFELEDSQI  416 (587)
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE---cCCCEE-EEEEcHHH-----HHHHHHHHHHHhccCCccc
Confidence            35778888886   799999999999999999996444   334333 24443211     1346777777774432211


Q ss_pred             C--Ccc-cCCccccc-ccCCCceEEEEEE-eCCcccHHHHHHHHHHhCCceEEEEEEec-CCc--eeEEEEEEEeCCCCC
Q 012814          110 A--GAK-TWPSKQVG-VHSVGDHTAIELI-GRDRPGLLSEISAVLANLRFNVAAAEVWT-HNR--RIACVLYVNDDTTCR  181 (456)
Q Consensus       110 ~--~~~-~~~~~~v~-~~~~~~~t~i~v~-~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~--~~~d~F~v~~~~~g~  181 (456)
                      .  ..+ ......+. .....+...|++. ..+.||++++|...|+++|++|....... .++  ...-.|.+..     
T Consensus       417 ~~~~~~~~~~~~~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~-----  491 (587)
T PRK07431        417 EINPTASGQDEPEVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK-----  491 (587)
T ss_pred             ccCccccCCCCCcEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH-----
Confidence            1  010 01111111 1233445566654 46889999999999999999999886643 222  2333344433     


Q ss_pred             cCCChHHHHHHHHHHHHHhcCCCCcccccccceeecccccCchhHHHHhhhcCccccCCCCCcCccCCCCCCCCCEEEEE
Q 012814          182 AVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVE  261 (456)
Q Consensus       182 ~l~d~~~~~~l~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~  261 (456)
                           ....++...+.+ |..+..                                                 .-.+.+ 
T Consensus       492 -----~~~~~~~~~l~~-l~~~~~-------------------------------------------------~~~i~~-  515 (587)
T PRK07431        492 -----EDREAAQKVLRE-LAKQLP-------------------------------------------------GAEVED-  515 (587)
T ss_pred             -----HHHHHHHHHHHH-HHHhcC-------------------------------------------------CceEEE-
Confidence                 122222222221 221110                                                 001111 


Q ss_pred             ecCCCCeEEEEEEee---CchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHH
Q 012814          262 RLEDKGYSVVNVKCR---DRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAA  338 (456)
Q Consensus       262 n~~~~~~~~v~V~~~---Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~  338 (456)
                         .++...|.|.|.   .+||++.++..+|.+.|+||....   ..+.-+ .|.|.         +...++..++|.+.
T Consensus       516 ---~~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~---~S~~~I-s~vV~---------~~~~~~av~~Lh~~  579 (587)
T PRK07431        516 ---GPAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA---TSEIRT-SCVVA---------EDDGVKALQAVHQA  579 (587)
T ss_pred             ---eCCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee---ccceEE-EEEEe---------HHHHHHHHHHHHHH
Confidence               124456888875   889999999999999999995443   222222 24452         34455566666655


Q ss_pred             H
Q 012814          339 I  339 (456)
Q Consensus       339 l  339 (456)
                      +
T Consensus       580 f  580 (587)
T PRK07431        580 F  580 (587)
T ss_pred             h
Confidence            4

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.85  E-value=0.0093  Score=45.06  Aligned_cols=62  Identities=16%  Similarity=0.364  Sum_probs=44.4

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeec-CceeeeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814          348 SLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTV-GEQAVNVFYVRDASGNPVDMKTIEALRKEIGH  414 (456)
Q Consensus       348 ~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~-g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~  414 (456)
                      .+.+.+.|+||+|.+|+++|+++|++|.+....+. ++.....++..+.   + + ..++++.++|.+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~-~-~~~~~l~~~l~~   64 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG---D-D-DVIEQIVKQLNK   64 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC---C-H-HHHHHHHHHHhC
Confidence            47789999999999999999999999999998775 3333333333332   1 2 456666666654

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=96.80  E-value=0.0073  Score=45.80  Aligned_cols=65  Identities=14%  Similarity=0.135  Sum_probs=43.2

Q ss_pred             EEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCc---eeeeEEEEEeCCCCCCChHHHHHHHHHHHHhh
Q 012814          349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGE---QAVNVFYVRDASGNPVDMKTIEALRKEIGHTM  416 (456)
Q Consensus       349 lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~---~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~  416 (456)
                      +.|..+|+||+|++|+++|+++|++|.+........   ...-.++++-. . + +..+++.+.+.|.+..
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~-~-~-~~~~l~~l~~~l~~~g   68 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLE-T-R-GAEHIEEIIAALREAG   68 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEE-e-C-CHHHHHHHHHHHHHcC
Confidence            357889999999999999999999999887655421   12222333211 1 1 2355677777776654

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=96.80  E-value=0.0042  Score=45.42  Aligned_cols=45  Identities=24%  Similarity=0.417  Sum_probs=37.4

Q ss_pred             EEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEE
Q 012814          349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVG-EQAVNVFYVR  393 (456)
Q Consensus       349 lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g-~~~~d~F~v~  393 (456)
                      +++...|+||.|.+|+..|.++|+||.+..+...+ +.+.-.|-+.
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~   46 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS   46 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence            35788999999999999999999999999987765 5566566553

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.75  E-value=0.011  Score=45.47  Aligned_cols=63  Identities=27%  Similarity=0.367  Sum_probs=43.9

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCc-eeeeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814          348 SLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGE-QAVNVFYVRDASGNPVDMKTIEALRKEIGH  414 (456)
Q Consensus       348 ~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~-~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~  414 (456)
                      .+.+.+.|+||+|.+|+++|+++|++|......+..+ ......++++.    .+..+++++.+.|.+
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~----~~~~~l~~~i~~L~~   65 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE----TSEAALNAALAEIEA   65 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc----CCHHHHHHHHHHHHc
Confidence            5789999999999999999999999999998765432 22223333322    233556666666664

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.74  E-value=0.01  Score=48.64  Aligned_cols=65  Identities=25%  Similarity=0.423  Sum_probs=46.7

Q ss_pred             CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814          126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (456)
Q Consensus       126 ~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~  198 (456)
                      ....+|++...|+||+|++|++.|+..|.||.+..+.- ......-+..+...        ...++++...|.+
T Consensus         6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~--------~~~i~Qi~kQL~K   71 (96)
T PRK08178          6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVND--------DQRLEQMISQIEK   71 (96)
T ss_pred             CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcC--------chHHHHHHHHHhC
Confidence            34577999999999999999999999999999998865 33333333333321        2456777766654

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.72  E-value=0.011  Score=47.28  Aligned_cols=63  Identities=22%  Similarity=0.365  Sum_probs=46.2

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEE-EEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACV-LYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (456)
Q Consensus       129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~-F~v~~~~~g~~l~d~~~~~~l~~~L~~  198 (456)
                      .+|.+...|+||.|++|++.|+..|.||.+..+.. ......-+ +.+..+       |+..++++...|.+
T Consensus         3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~-------d~~~ieqI~kQL~K   67 (84)
T PRK13562          3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQ-------DDTSLHILIKKLKQ   67 (84)
T ss_pred             EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCC-------CHHHHHHHHHHHhC
Confidence            46899999999999999999999999999999876 33333333 333312       34556777766654

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.72  E-value=0.0085  Score=49.05  Aligned_cols=66  Identities=14%  Similarity=0.224  Sum_probs=52.2

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhh
Q 012814          346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTM  416 (456)
Q Consensus       346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~  416 (456)
                      ...|.+...|+||+|++|+-.|+..|.||++..+.-.+....-.+.+.-. +    +..++++..+|.+.+
T Consensus         8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~----~~~i~Qi~kQL~KLi   73 (96)
T PRK08178          8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-D----DQRLEQMISQIEKLE   73 (96)
T ss_pred             CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-C----chHHHHHHHHHhCCc
Confidence            46799999999999999999999999999999987766665444444322 2    357888888888764

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.72  E-value=0.0097  Score=53.56  Aligned_cols=66  Identities=18%  Similarity=0.347  Sum_probs=50.1

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhh
Q 012814          347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTM  416 (456)
Q Consensus       347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~  416 (456)
                      ..+.|...|+||.|++|+..|+++|+||.+.-+...++...-.+.++- ++   ++..+++|..+|.+.+
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V-~~---d~~~i~qi~kQl~Kli   67 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVV-VG---DDKVLEQITKQLNKLV   67 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEE-EC---CHHHHHHHHHHHhcCc
Confidence            468899999999999999999999999999988776544333333321 12   2467889999998863

acetohydroxyacid synthase is a synonym.

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.69  E-value=0.016  Score=43.79  Aligned_cols=60  Identities=23%  Similarity=0.407  Sum_probs=43.0

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC-Cce-eEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRR-IACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (456)
Q Consensus       130 ~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~-~~~-~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~  197 (456)
                      .+.+.+.|+||+|.+|+..|+++|++|......+. ++. +.-.|.+..+       + ...+.+...|.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~l~~~l~   63 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGD-------D-DVIEQIVKQLN   63 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECC-------H-HHHHHHHHHHh
Confidence            46788999999999999999999999999998875 333 4333333331       2 34555555554

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.62  E-value=0.015  Score=44.77  Aligned_cols=35  Identities=23%  Similarity=0.426  Sum_probs=31.9

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC
Q 012814          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH  164 (456)
Q Consensus       130 ~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~  164 (456)
                      .|.+.+.|+||++.+|+.+|+++|+||......+.
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~   36 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEA   36 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEccc
Confidence            57889999999999999999999999999987664

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.61  E-value=0.01  Score=44.35  Aligned_cols=36  Identities=25%  Similarity=0.309  Sum_probs=31.4

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecC
Q 012814          348 SLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVG  383 (456)
Q Consensus       348 ~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g  383 (456)
                      ++.+.-+|+||-|++++.+|+++|+||.+......+
T Consensus         1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~   36 (65)
T cd04882           1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK   36 (65)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence            367889999999999999999999999988765544

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.57  E-value=0.016  Score=43.55  Aligned_cols=44  Identities=30%  Similarity=0.374  Sum_probs=36.6

Q ss_pred             EEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecC--ceeeeEEEE
Q 012814          349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVG--EQAVNVFYV  392 (456)
Q Consensus       349 lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g--~~~~d~F~v  392 (456)
                      +.+.+.|+||+|++|+++|+++|++|.+..+...+  +...-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            67889999999999999999999999999987765  344445555

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.48  E-value=0.018  Score=45.32  Aligned_cols=62  Identities=21%  Similarity=0.349  Sum_probs=46.4

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCce-eee-EEEEEeCCCCCCChHHHHHHHHHHHHh
Q 012814          347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQ-AVN-VFYVRDASGNPVDMKTIEALRKEIGHT  415 (456)
Q Consensus       347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~-~~d-~F~v~d~~g~~l~~~~~~~L~~~l~~~  415 (456)
                      +.+.+...|+||+|.+|+..|+..|.||.+..+....+. ... ++-+ .      ++..+++|.++|.+.
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~------~~~~i~ql~kQL~KL   67 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A------SERPIDLLSSQLNKL   67 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C------CCchHHHHHHHHhcC
Confidence            568999999999999999999999999999998764333 222 3333 2      134567777777664

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.46  E-value=0.026  Score=43.68  Aligned_cols=63  Identities=19%  Similarity=0.164  Sum_probs=44.3

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814          348 SLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVG-EQAVNVFYVRDASGNPVDMKTIEALRKEIGH  414 (456)
Q Consensus       348 ~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g-~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~  414 (456)
                      .+.+.+.||||+|++|++.|+++|++|......+.. +.+.=.|-+.-. + .  +.++++|.++|.+
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-~-~--~~~l~~l~~~L~~   65 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-T-M--NGDIDELLEELRE   65 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-c-h--HHHHHHHHHHHhc
Confidence            478999999999999999999999999998775533 334444555221 1 1  1256666666654

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.44  E-value=0.022  Score=51.26  Aligned_cols=64  Identities=19%  Similarity=0.360  Sum_probs=47.5

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC--ceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHh
Q 012814          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (456)
Q Consensus       129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~--~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L  200 (456)
                      .++++...|+||.|++|++.|+.+|+||.+..+...+  +...-+|.+..        +....+.+...|.+..
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--------d~~~i~qi~kQl~Kli   67 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--------DDKVLEQITKQLNKLV   67 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcCc
Confidence            4789999999999999999999999999999887644  33444444433        2355677777766543

acetohydroxyacid synthase is a synonym.

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.42  E-value=0.024  Score=42.85  Aligned_cols=46  Identities=20%  Similarity=0.435  Sum_probs=36.6

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC-ceeEEEEEEE
Q 012814          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVN  175 (456)
Q Consensus       130 ~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~-~~~~d~F~v~  175 (456)
                      .+.+.++|+||.|++|+..|+++++||.+....+.. +.+.-+|.+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~   48 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELE   48 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEe
Confidence            578899999999999999999999999998887753 4444334343

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.40  E-value=0.02  Score=51.69  Aligned_cols=66  Identities=20%  Similarity=0.395  Sum_probs=48.8

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhh
Q 012814          347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTM  416 (456)
Q Consensus       347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~  416 (456)
                      ..+.|...|+||.|++|+..|+++|+||.+..+....+...-.+.++- ++   ++..++++..+|.+.+
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V-~~---~~~~i~qi~kQl~KLi   68 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVT-SG---DEQVIEQITKQLNKLI   68 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEE-EC---CHHHHHHHHHHHhccc
Confidence            468899999999999999999999999999987665533333232321 12   2467888988888763

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.36  E-value=0.011  Score=44.40  Aligned_cols=44  Identities=25%  Similarity=0.419  Sum_probs=37.7

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC--ceeEEEEEE
Q 012814          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYV  174 (456)
Q Consensus       131 i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~--~~~~d~F~v  174 (456)
                      +.+.+.|+||++++|+.+|+++|+||.+..+...+  +...-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            67889999999999999999999999999998854  555556666

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.33  E-value=0.031  Score=50.51  Aligned_cols=64  Identities=14%  Similarity=0.357  Sum_probs=47.7

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC--ceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHh
Q 012814          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (456)
Q Consensus       129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~--~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L  200 (456)
                      .+++|...|+||.|++|++.|+.+|+||.+..+....  +...-+|.+..        |...++++...|.+..
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~--------~~~~i~qi~kQl~KLi   68 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG--------DEQVIEQITKQLNKLI   68 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhccc
Confidence            4789999999999999999999999999999877543  34444454543        2455677777666533

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.27  E-value=0.029  Score=42.26  Aligned_cols=33  Identities=27%  Similarity=0.454  Sum_probs=30.4

Q ss_pred             EEEEeCCCcchHHHHHHHHHHCCceEEEEEEee
Q 012814          349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVST  381 (456)
Q Consensus       349 lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T  381 (456)
                      +.+.+.|+||.|.+|++.|+++|++|.+.....
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~   34 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR   34 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence            578899999999999999999999999988765

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.26  E-value=0.029  Score=44.15  Aligned_cols=62  Identities=21%  Similarity=0.322  Sum_probs=45.5

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec--CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (456)
Q Consensus       128 ~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T--~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~  198 (456)
                      ...+++...|+||.|++|+++|...|.||.+..+..  .++...-++.+.+   .      ..++.|...|.+
T Consensus         3 ~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~---~------~~i~ql~kQL~K   66 (76)
T PRK11152          3 QHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVAS---E------RPIDLLSSQLNK   66 (76)
T ss_pred             eEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECC---C------chHHHHHHHHhc
Confidence            357899999999999999999999999999999876  3343444444532   2      334666666554

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.20  E-value=0.0081  Score=46.44  Aligned_cols=68  Identities=16%  Similarity=0.357  Sum_probs=48.4

Q ss_pred             EEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEec--CCceEEEEEEEccC-CCCCCCHHHHHHHHHHHHHH
Q 012814          271 VNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD--GPHASQEYYIRHMD-GCILDTEGEKERVIKCLEAA  338 (456)
Q Consensus       271 v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~--~g~~~d~f~V~~~~-g~~~~~~~~~~~l~~~L~~~  338 (456)
                      |.+.|+.||-.|||++-+|+.+++.|+.|+|...  ++.-..+|.+...+ +..+......+++.+.+...
T Consensus         3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~   73 (77)
T cd04898           3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKT   73 (77)
T ss_pred             ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHH
Confidence            6788999999999999999999999999999753  55544444443322 32344445567777665543

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.16  E-value=0.061  Score=42.40  Aligned_cols=48  Identities=21%  Similarity=0.311  Sum_probs=39.6

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC-CceeEEEEEEEe
Q 012814          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVND  176 (456)
Q Consensus       129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~-~~~~~d~F~v~~  176 (456)
                      +.+.+..+|+||.|++|...|+++|+||.+...... .+...-.|+|..
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~   50 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF   50 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence            457778899999999999999999999999987664 345666788866

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=96.13  E-value=0.05  Score=39.90  Aligned_cols=46  Identities=28%  Similarity=0.437  Sum_probs=36.6

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC-ceeEEEEEEEe
Q 012814          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND  176 (456)
Q Consensus       131 i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~-~~~~d~F~v~~  176 (456)
                      |.+.+.|+||++.+|+..|.+++++|.+..+...+ +.....|.+..
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~   47 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEV   47 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEE
Confidence            46789999999999999999999999999987765 33444444544

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.13  E-value=0.029  Score=42.93  Aligned_cols=44  Identities=32%  Similarity=0.476  Sum_probs=33.9

Q ss_pred             EEEEeCCCcchHHHHHHHHHHCCceEEEEEEeec--CceeeeEEEE
Q 012814          349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTV--GEQAVNVFYV  392 (456)
Q Consensus       349 lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~--g~~~~d~F~v  392 (456)
                      +-+...|+||.+++|++.|+++|+||.+......  ++.+.=+|.+
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v   47 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV   47 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence            3467899999999999999999999998887553  3444434444

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.12  E-value=0.019  Score=42.91  Aligned_cols=36  Identities=22%  Similarity=0.340  Sum_probs=31.6

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC
Q 012814          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN  165 (456)
Q Consensus       130 ~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~  165 (456)
                      ++.+..+|+||-|++++..|+++|+||.+...+...
T Consensus         1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~   36 (65)
T cd04882           1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK   36 (65)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence            367889999999999999999999999988876543

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08577 hypothetical protein; Provisional

Probab=96.09  E-value=0.059  Score=47.30  Aligned_cols=53  Identities=30%  Similarity=0.449  Sum_probs=42.2

Q ss_pred             CCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC--CceeEEEEEEEe
Q 012814          124 SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVND  176 (456)
Q Consensus       124 ~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~--~~~~~d~F~v~~  176 (456)
                      +....+.+.+.+.|+||+|++|+++|+++|+||.+....+.  ++.+...|.+.-
T Consensus        52 ~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev  106 (136)
T PRK08577         52 PGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDL  106 (136)
T ss_pred             CCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEe
Confidence            44568999999999999999999999999999999988774  343444444443

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=96.05  E-value=0.039  Score=43.04  Aligned_cols=48  Identities=23%  Similarity=0.377  Sum_probs=38.4

Q ss_pred             EEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCce-eeeEEEEEeCCC
Q 012814          349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQ-AVNVFYVRDASG  397 (456)
Q Consensus       349 lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~-~~d~F~v~d~~g  397 (456)
                      |-+...|+||-|++|-..|+.+|||+.+.+....... .+=.||| |-+|
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffv-d~~~   51 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFV-DCEV   51 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEE-EEEc
Confidence            4555689999999999999999999999987776555 3447777 5556

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.02  E-value=0.05  Score=41.09  Aligned_cols=36  Identities=25%  Similarity=0.401  Sum_probs=32.2

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecC
Q 012814          348 SLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVG  383 (456)
Q Consensus       348 ~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g  383 (456)
                      .+.+.+.|+||.|++|++.|++++++|.+....+..
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~   37 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER   37 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC
Confidence            478899999999999999999999999988876653

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.00  E-value=0.043  Score=41.24  Aligned_cols=45  Identities=29%  Similarity=0.372  Sum_probs=36.0

Q ss_pred             EEEEecCCcchHHHHHHHHhhCCceEEEEEEEE-e-CCEEEEEEEEE
Q 012814           38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-D-GGWFMDVFHVI   82 (456)
Q Consensus        38 V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~-~g~~~d~f~V~   82 (456)
                      +.+.++|+||.+++++..|+++|++|....... . ++...-.+.+.
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~   48 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVD   48 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeC
Confidence            578999999999999999999999999888775 2 45554344443

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=95.95  E-value=0.054  Score=41.72  Aligned_cols=34  Identities=15%  Similarity=0.260  Sum_probs=30.5

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC
Q 012814          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH  164 (456)
Q Consensus       131 i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~  164 (456)
                      +.+..+|+||-|++++..|+++|+||.+......
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            5788999999999999999999999998876653

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.91  E-value=0.063  Score=41.04  Aligned_cols=36  Identities=22%  Similarity=0.439  Sum_probs=31.6

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeec
Q 012814          347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTV  382 (456)
Q Consensus       347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~  382 (456)
                      +.+.+..+|+||.|.+|+++|+++|+||.+....-.
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~   37 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPS   37 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEecc
Confidence            468889999999999999999999999998865443

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=95.88  E-value=0.048  Score=42.03  Aligned_cols=34  Identities=21%  Similarity=0.215  Sum_probs=30.5

Q ss_pred             EEEEeCCCcchHHHHHHHHHHCCceEEEEEEeec
Q 012814          349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTV  382 (456)
Q Consensus       349 lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~  382 (456)
                      +.+.-+|+||-|++++..|+++|+||.+......
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            6778899999999999999999999998876654

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08577 hypothetical protein; Provisional

Probab=95.88  E-value=0.066  Score=46.97  Aligned_cols=65  Identities=29%  Similarity=0.432  Sum_probs=45.9

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecC--ceeeeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814          346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVG--EQAVNVFYVRDASGNPVDMKTIEALRKEIGH  414 (456)
Q Consensus       346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g--~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~  414 (456)
                      .+.+.+.+.|+||+|++|+++|++++++|.+....+..  +.+.-.|.+ +..+.   +.++.++.++|..
T Consensus        56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~v-ev~~~---~~~l~~l~~~L~~  122 (136)
T PRK08577         56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIV-DLSKS---DIDLEELEEELKK  122 (136)
T ss_pred             EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEE-EeCCc---hhhHHHHHHHHHc
Confidence            57799999999999999999999999999999877654  223333333 22121   1345666666654

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=95.87  E-value=0.062  Score=43.73  Aligned_cols=65  Identities=18%  Similarity=0.350  Sum_probs=47.0

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceee-eEEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814          347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAV-NVFYVRDASGNPVDMKTIEALRKEIGH  414 (456)
Q Consensus       347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~-d~F~v~d~~g~~l~~~~~~~L~~~l~~  414 (456)
                      +.|-+...|+||-|+++-..|+++|||+.+.+......+-+ =.||| |.+|. .+ ..++++-+.|.+
T Consensus        15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfV-Dieg~-~~-~~~~~~l~~L~~   80 (90)
T cd04931          15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFI-NLDKK-SA-PALDPIIKSLRN   80 (90)
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcC-CC-HHHHHHHHHHHH
Confidence            56777779999999999999999999999999877655544 47888 55565 22 333444444444

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=95.83  E-value=0.082  Score=41.03  Aligned_cols=63  Identities=17%  Similarity=0.307  Sum_probs=44.3

Q ss_pred             EEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCc-eeeeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814          350 ELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGE-QAVNVFYVRDASGNPVDMKTIEALRKEIGH  414 (456)
Q Consensus       350 ev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~-~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~  414 (456)
                      -+...|+||-|++|...|+++|+||.+........ ...=.|||. .+|.. .+...+.+.+.|.+
T Consensus         3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id-~~~~~-~~~~~~~~l~~l~~   66 (75)
T cd04880           3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVD-FEGHI-DDPDVKEALEELKR   66 (75)
T ss_pred             EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEE-EECCC-CCHHHHHHHHHHHH
Confidence            44557999999999999999999999997665544 455678884 44532 22444555555554

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.80  E-value=0.062  Score=37.31  Aligned_cols=35  Identities=37%  Similarity=0.595  Sum_probs=31.5

Q ss_pred             EEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecC
Q 012814          349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVG  383 (456)
Q Consensus       349 lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g  383 (456)
                      |.+.+.|+||++++|+.+|+++|++|.........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46788999999999999999999999999987654

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=95.78  E-value=0.075  Score=38.90  Aligned_cols=61  Identities=18%  Similarity=0.353  Sum_probs=42.4

Q ss_pred             EEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCce-eeeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814          349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQ-AVNVFYVRDASGNPVDMKTIEALRKEIGH  414 (456)
Q Consensus       349 lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~-~~d~F~v~d~~g~~l~~~~~~~L~~~l~~  414 (456)
                      |.+.+.|+||.+.+|+..|.+++++|....+...++. ..-.|.+.-.     +......+.++|..
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~   62 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR-----DLEHLARIMRKLRQ   62 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence            4678999999999999999999999999998776633 2223333212     12445566665553

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>PRK04435 hypothetical protein; Provisional

Probab=95.77  E-value=0.093  Score=46.75  Aligned_cols=67  Identities=19%  Similarity=0.268  Sum_probs=50.5

Q ss_pred             CCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC-CceeEEEEEEEeCCCCCcCCCh-HHHHHHHHHHH
Q 012814          124 SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVNDDTTCRAVGDQ-TRLSLMEEQLK  197 (456)
Q Consensus       124 ~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~-~~~~~d~F~v~~~~~g~~l~d~-~~~~~l~~~L~  197 (456)
                      .......|.+.+.|+||+|++|..+++++|+||......+. ++.+.-.|.+...       +. ..++.|-++|+
T Consensus        65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs-------~~~~~L~~Li~~L~  133 (147)
T PRK04435         65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTS-------SMEGDIDELLEKLR  133 (147)
T ss_pred             CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeC-------ChHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999887664 4556556666542       12 25566655554

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=95.76  E-value=0.007  Score=48.62  Aligned_cols=61  Identities=16%  Similarity=0.293  Sum_probs=45.1

Q ss_pred             EEEEEeCC-cccHHHHHHHHHHhCCceEEEEEEecC-----C----ceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814          130 AIELIGRD-RPGLLSEISAVLANLRFNVAAAEVWTH-----N----RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (456)
Q Consensus       130 ~i~v~~~D-rpGLL~~I~~~l~~~gi~I~~a~i~T~-----~----~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~  198 (456)
                      +++|.|+| +.|+++.|+++|+++|+||.+.+-.+.     +    ......|.++.+    +    ...+.++.+|.+
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~----~----~~~~~lr~~L~~   71 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQ----P----ADLEALRAALLE   71 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCC----C----CCHHHHHHHHHH
Confidence            47899999 999999999999999999987665321     1    245667777764    1    124677777764

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=95.73  E-value=0.014  Score=44.34  Aligned_cols=43  Identities=23%  Similarity=0.315  Sum_probs=33.4

Q ss_pred             EEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEE
Q 012814          349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFY  391 (456)
Q Consensus       349 lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~  391 (456)
                      +-+.+.|+||+|.+|+..|+++|+||.+....+.++.+.=.|-
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~   44 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVID   44 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEE
Confidence            4568999999999999999999999988876554444433333

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>PRK11899 prephenate dehydratase; Provisional

Probab=95.72  E-value=0.042  Score=54.25  Aligned_cols=55  Identities=22%  Similarity=0.320  Sum_probs=44.2

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCcee-eeEEEEEeCCCCCCC
Q 012814          346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQA-VNVFYVRDASGNPVD  401 (456)
Q Consensus       346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~-~d~F~v~d~~g~~l~  401 (456)
                      .|.|-+...|+||.|+++-.+|+++|||+.+.+..-.+.+- +=.||| |.+|..-+
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~i-d~eg~~~d  249 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYA-DIEGHPED  249 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEE-EEECCCCC
Confidence            46677777899999999999999999999999988776554 448888 66675433

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=95.71  E-value=0.011  Score=44.81  Aligned_cols=45  Identities=20%  Similarity=0.312  Sum_probs=37.0

Q ss_pred             EEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEE
Q 012814           38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI   82 (456)
Q Consensus        38 V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~   82 (456)
                      +.+.+.|+||++++++.+|++.|+||......+.+|.+.-.|.+.
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~   46 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDID   46 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcC
Confidence            678999999999999999999999998876655557776556554

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=95.60  E-value=0.03  Score=42.83  Aligned_cols=46  Identities=24%  Similarity=0.445  Sum_probs=37.0

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCceEEEEEEec--CCceeEEEEEEEe
Q 012814          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVND  176 (456)
Q Consensus       131 i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T--~~~~~~d~F~v~~  176 (456)
                      +.+...|+||.+++|++.|+++|+||.+.....  .++...-+|.+..
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~   49 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE   49 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence            456899999999999999999999999988765  3456665665544

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.55  E-value=0.11  Score=35.95  Aligned_cols=35  Identities=37%  Similarity=0.619  Sum_probs=31.5

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC
Q 012814          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN  165 (456)
Q Consensus       131 i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~  165 (456)
                      |.+.++|+||++++|+..|.++|++|.........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46889999999999999999999999999987643

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>PRK04435 hypothetical protein; Provisional

Probab=95.43  E-value=0.13  Score=45.83  Aligned_cols=76  Identities=14%  Similarity=0.037  Sum_probs=55.7

Q ss_pred             EEEEecCCCCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHH
Q 012814           24 RASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKAL  102 (456)
Q Consensus        24 ~V~v~~~~~~~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L  102 (456)
                      +.-+.....+....+.+.++|+||++++|+.+|+++|+||....... .+|.+--.|.+...+.     ...++.|.+.|
T Consensus        58 vf~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-----~~~L~~Li~~L  132 (147)
T PRK04435         58 VFPFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-----EGDIDELLEKL  132 (147)
T ss_pred             eECccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-----HHHHHHHHHHH
Confidence            33444455567789999999999999999999999999999888765 4576665676653211     12566666666


Q ss_pred             CC
Q 012814          103 GP  104 (456)
Q Consensus       103 ~~  104 (456)
                      +.
T Consensus       133 ~~  134 (147)
T PRK04435        133 RN  134 (147)
T ss_pred             Hc
Confidence            65

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.38  E-value=0.11  Score=39.67  Aligned_cols=47  Identities=28%  Similarity=0.442  Sum_probs=36.5

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC--CceeEEEEEEE
Q 012814          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVN  175 (456)
Q Consensus       129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~--~~~~~d~F~v~  175 (456)
                      +.+.+..+|+||.|.+++..|+++|+||.+....-.  ++...-+|.+.
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~   50 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ   50 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence            467889999999999999999999999998865442  33444445543

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=95.25  E-value=0.5  Score=49.05  Aligned_cols=100  Identities=11%  Similarity=0.140  Sum_probs=67.1

Q ss_pred             CeEEEEEE---eeCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh-c
Q 012814          267 GYSVVNVK---CRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR-R  342 (456)
Q Consensus       267 ~~~~v~V~---~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~-r  342 (456)
                      +...|+|.   .++++|++.++..+|.++|++|....... .+.. -.|.|..         +..++..+.|.+.+.. .
T Consensus       259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~-s~~~-Is~~V~~---------~d~~~a~~~L~~~~~~~~  327 (401)
T TIGR00656       259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTP-SETS-ISLTVDE---------TDADEAVRALKDQSGAAG  327 (401)
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCC-CCce-EEEEEeH---------HHHHHHHHHHHHHHHhcC
Confidence            55678888   57889999999999999999997443221 1111 1355522         2233444455544311 1


Q ss_pred             ------CCCceEEEEEeC---CCcchHHHHHHHHHHCCceEEEE
Q 012814          343 ------VSEGLSLELCAK---DRVGLLSEVTRILRENGLSVTRA  377 (456)
Q Consensus       343 ------~~~~~~lev~~~---DrpGlL~~It~~l~~~gi~I~~a  377 (456)
                            ..+...|.|.|.   ++||+++++.++|.+.|+||...
T Consensus       328 ~~~i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i  371 (401)
T TIGR00656       328 LDRVEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMI  371 (401)
T ss_pred             CceEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEE
Confidence                  123456777775   78999999999999999999853

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.20  E-value=0.081  Score=40.00  Aligned_cols=54  Identities=22%  Similarity=0.391  Sum_probs=38.2

Q ss_pred             CcccHHHHHHHHHHhCCceEEEEEEec--CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814          137 DRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (456)
Q Consensus       137 DrpGLL~~I~~~l~~~gi~I~~a~i~T--~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~  198 (456)
                      |+||.|.+|+++|...|.||.+..+..  .++...-++.+...        +...+.|...|.+
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~--------~~~i~~l~~Ql~K   56 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD--------DREIEQLVKQLEK   56 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---------CCHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC--------chhHHHHHHHHhc
Confidence            789999999999999999999999987  44445545544441        2334666666654

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=95.19  E-value=0.13  Score=40.23  Aligned_cols=50  Identities=18%  Similarity=0.312  Sum_probs=39.3

Q ss_pred             EEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCce-eeeEEEEEeCCCCC
Q 012814          349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQ-AVNVFYVRDASGNP  399 (456)
Q Consensus       349 lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~-~~d~F~v~d~~g~~  399 (456)
                      +-+...|+||-|+++-..|+.+|+|+.+.+....... .+=.||| |.+|..
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~i-d~e~~~   53 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFV-DCECDQ   53 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcCH
Confidence            4455689999999999999999999999998776554 4447888 555644

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.10  E-value=0.069  Score=40.38  Aligned_cols=57  Identities=19%  Similarity=0.426  Sum_probs=38.2

Q ss_pred             CCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHh
Q 012814          355 DRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHT  415 (456)
Q Consensus       355 DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~  415 (456)
                      |+||+|.+|+.+|...|+||++..+........-.+.++-. |.   +..+++|..+|.+.
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~-~~---~~~i~~l~~Ql~Kl   57 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVS-GD---DREIEQLVKQLEKL   57 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEE-S----CCHHHHHHHHHHCS
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEe-eC---chhHHHHHHHHhcc
Confidence            78999999999999999999999998844333333333211 21   23567777777654

>PRK07334 threonine dehydratase; Provisional

Probab=95.01  E-value=0.14  Score=53.28  Aligned_cols=67  Identities=19%  Similarity=0.290  Sum_probs=50.5

Q ss_pred             CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC-----CceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814          125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-----NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (456)
Q Consensus       125 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~-----~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~  198 (456)
                      ....+.|.|.+.||||+|++|+.+|++.++||.+....+.     ++.+.-.|.+.-.       |.++++++.+.|++
T Consensus       323 ~~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~-------d~~~L~~vi~~Lr~  394 (403)
T PRK07334        323 AGRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR-------DAAHLQEVIAALRA  394 (403)
T ss_pred             CCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence            3446899999999999999999999999999999998764     3454444444431       34667777766654

>PRK07334 threonine dehydratase; Provisional

Probab=94.82  E-value=0.46  Score=49.50  Aligned_cols=67  Identities=16%  Similarity=0.232  Sum_probs=49.5

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeec----C-ceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhhh
Q 012814          346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTV----G-EQAVNVFYVRDASGNPVDMKTIEALRKEIGHTML  417 (456)
Q Consensus       346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~----g-~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~~  417 (456)
                      .+.|+|.+.||||+|.+|+++|++.++||.+....+.    . ..+.=.|.+. ..    +.+++++|.+.|.....
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~-V~----d~~~L~~vi~~Lr~~g~  397 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIE-TR----DAAHLQEVIAALRAAGF  397 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEE-eC----CHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999999999999998764    2 2333233331 11    23577888888877644

>PRK06291 aspartate kinase; Provisional

Probab=94.34  E-value=1.5  Score=46.52  Aligned_cols=102  Identities=13%  Similarity=0.194  Sum_probs=69.5

Q ss_pred             CCeEEEEEEee---CchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh-
Q 012814          266 KGYSVVNVKCR---DRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR-  341 (456)
Q Consensus       266 ~~~~~v~V~~~---Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~-  341 (456)
                      ++...|+|.+.   +.+|+++++..+|+++|++|.-....+.....  .|.|..         ...++..+.|.+.+.. 
T Consensus       319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sI--sf~V~~---------~d~~~av~~L~~~~~~~  387 (465)
T PRK06291        319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESNI--SLVVDE---------ADLEKALKALRREFGEG  387 (465)
T ss_pred             CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceE--EEEEeH---------HHHHHHHHHHHHHHHHh
Confidence            35677888765   68999999999999999999765433322112  355532         2223334445444432 


Q ss_pred             ---c---CCCceEEEEEeC---CCcchHHHHHHHHHHCCceEEEEE
Q 012814          342 ---R---VSEGLSLELCAK---DRVGLLSEVTRILRENGLSVTRAG  378 (456)
Q Consensus       342 ---r---~~~~~~lev~~~---DrpGlL~~It~~l~~~gi~I~~a~  378 (456)
                         .   ..+...|.|.|.   ++||++.++..+|.+.|++|...-
T Consensus       388 ~~~~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~is  433 (465)
T PRK06291        388 LVRDVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMIS  433 (465)
T ss_pred             cCcceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEE
Confidence               1   124567888886   799999999999999999998544

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=94.16  E-value=0.53  Score=36.39  Aligned_cols=46  Identities=17%  Similarity=0.256  Sum_probs=37.2

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEe
Q 012814          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND  176 (456)
Q Consensus       131 i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~  176 (456)
                      +.+...|+||-|++|...|+++|+||....... .+....-.|++.-
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~   48 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF   48 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE
Confidence            345568999999999999999999999996665 3445667788876

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=94.14  E-value=1.2  Score=46.12  Aligned_cols=106  Identities=17%  Similarity=0.282  Sum_probs=67.6

Q ss_pred             CeEEEEEE---ecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 012814           34 ECTVVKVD---SVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA  110 (456)
Q Consensus        34 ~~~~V~V~---~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~  110 (456)
                      +...|+|.   .++++|.++++..+|.++|++|.--... ..+..+ .|.|...+     .+...+.|++.+... ..  
T Consensus       259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~-~s~~~I-s~~V~~~d-----~~~a~~~L~~~~~~~-~~--  328 (401)
T TIGR00656       259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT-PSETSI-SLTVDETD-----ADEAVRALKDQSGAA-GL--  328 (401)
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC-CCCceE-EEEEeHHH-----HHHHHHHHHHHHHhc-CC--
Confidence            34567777   5678999999999999999999743322 122222 35553211     122344444443221 00  


Q ss_pred             CcccCCcccccccCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEE
Q 012814          111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAA  158 (456)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~  158 (456)
                             ..  .....+...|.|.|.   ++||+++++..+|++.|+||..
T Consensus       329 -------~~--i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~  370 (401)
T TIGR00656       329 -------DR--VEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM  370 (401)
T ss_pred             -------ce--EEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence                   00  122346778888875   7899999999999999999985

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=94.14  E-value=0.26  Score=42.05  Aligned_cols=53  Identities=9%  Similarity=0.101  Sum_probs=42.5

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeee-EEEEEeCCCCC
Q 012814          346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVN-VFYVRDASGNP  399 (456)
Q Consensus       346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d-~F~v~d~~g~~  399 (456)
                      .+.|-+...|+||-|++|-..|+.+|||+.+.+....+..-++ .||| |.+|..
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfI-dieg~~   94 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLV-RCEVHR   94 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEE-EEEeCH
Confidence            4567777799999999999999999999999998887665444 7777 555643

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06635 aspartate kinase; Reviewed

Probab=94.12  E-value=0.67  Score=48.18  Aligned_cols=103  Identities=14%  Similarity=0.207  Sum_probs=68.9

Q ss_pred             CeEEEEEE-eeCchhHHHHHHHHHHhCCcEEEEEEEEecC-CceEEEEEEEccCCCCCCCHHHHHHHHHHHHHH---Hhh
Q 012814          267 GYSVVNVK-CRDRAKLMFDIVCTLTDMQYVVFHAAISSDG-PHASQEYYIRHMDGCILDTEGEKERVIKCLEAA---IRR  341 (456)
Q Consensus       267 ~~~~v~V~-~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~-g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~---l~~  341 (456)
                      +...|+|. ..++||.++++..+|.+.|+||......... |..--.|.|..         +..++..+.|++.   +.-
T Consensus       261 ~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~---------~~~~~a~~~L~~~~~~~~~  331 (404)
T PRK06635        261 DEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR---------DDLEKALELLEEVKDEIGA  331 (404)
T ss_pred             CeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH---------HHHHHHHHHHHHHHHHcCc
Confidence            44555555 4778999999999999999999965444333 23443466532         2233344444442   111


Q ss_pred             c----CCCceEEEEEe---CCCcchHHHHHHHHHHCCceEEEEE
Q 012814          342 R----VSEGLSLELCA---KDRVGLLSEVTRILRENGLSVTRAG  378 (456)
Q Consensus       342 r----~~~~~~lev~~---~DrpGlL~~It~~l~~~gi~I~~a~  378 (456)
                      +    ......+.|.+   .|+||++++|.++|++.|++|....
T Consensus       332 ~~i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~  375 (404)
T PRK06635        332 ESVTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS  375 (404)
T ss_pred             ceEEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence            1    12445688876   5899999999999999999998853

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=93.95  E-value=0.74  Score=37.45  Aligned_cols=71  Identities=13%  Similarity=0.186  Sum_probs=51.2

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhcC
Q 012814          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG  202 (456)
Q Consensus       127 ~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~~  202 (456)
                      ..+.|-+..+|+||-|+++-..|+.+|+|+....... .+....-.|||.-.  |. . + ..++.+-..|.+.|+.
T Consensus        13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDie--g~-~-~-~~~~~~l~~L~~~~~~   84 (90)
T cd04931          13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLD--KK-S-A-PALDPIIKSLRNDIGA   84 (90)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE--cC-C-C-HHHHHHHHHHHHHhCC
Confidence            4577777789999999999999999999999988776 34556678888763  54 2 3 3444444555554543

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06635 aspartate kinase; Reviewed

Probab=93.94  E-value=0.8  Score=47.61  Aligned_cols=107  Identities=20%  Similarity=0.283  Sum_probs=67.1

Q ss_pred             EEEEE-ecCCcchHHHHHHHHhhCCceEEEEEEEEeC-CEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCccc
Q 012814           37 VVKVD-SVNKPGILLEVVQVLSDLDLIITKAYISSDG-GWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKT  114 (456)
Q Consensus        37 ~V~V~-~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~-g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~~~~~  114 (456)
                      .|+|. -.++||.++++..+|.+.|+||.-...+... |..--.|.|...+.     +...+.|++ +...+..      
T Consensus       264 ~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~-----~~a~~~L~~-~~~~~~~------  331 (404)
T PRK06635        264 KVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDL-----EKALELLEE-VKDEIGA------  331 (404)
T ss_pred             EEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHH-----HHHHHHHHH-HHHHcCc------
Confidence            34444 4678999999999999999999965443322 23433465542111     123333433 1111110      


Q ss_pred             CCcccccccCCCceEEEEEEe---CCcccHHHHHHHHHHhCCceEEEEE
Q 012814          115 WPSKQVGVHSVGDHTAIELIG---RDRPGLLSEISAVLANLRFNVAAAE  160 (456)
Q Consensus       115 ~~~~~v~~~~~~~~t~i~v~~---~DrpGLL~~I~~~l~~~gi~I~~a~  160 (456)
                         ..  .....+...++|.+   .++||++++|..+|+++|+||....
T Consensus       332 ---~~--i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~  375 (404)
T PRK06635        332 ---ES--VTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS  375 (404)
T ss_pred             ---ce--EEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence               00  11234577788876   5899999999999999999998754

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=93.81  E-value=0.33  Score=36.93  Aligned_cols=32  Identities=9%  Similarity=0.028  Sum_probs=27.7

Q ss_pred             EEEeeCchhHHHHHHHHHHhCCcEEEEEEEEec
Q 012814          272 NVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD  304 (456)
Q Consensus       272 ~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~  304 (456)
                      .|.-|||||-|.+++..++. |.||.+.+-...
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~   33 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQ   33 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcC
Confidence            57789999999999999999 999998765443

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=93.77  E-value=0.24  Score=51.22  Aligned_cols=55  Identities=22%  Similarity=0.335  Sum_probs=43.9

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCce-eeeEEEEEeCCCCCCC
Q 012814          346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQ-AVNVFYVRDASGNPVD  401 (456)
Q Consensus       346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~-~~d~F~v~d~~g~~l~  401 (456)
                      .+.+-+...|+||.|+++-..|+.+|||+.+.+..-.+.+ -+=.||| |..|..-+
T Consensus       297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffi-d~eg~~~d  352 (386)
T PRK10622        297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYL-DVQANLRS  352 (386)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEE-EEeCCCCC
Confidence            4556677789999999999999999999999998866555 5558888 66675433

>PRK08210 aspartate kinase I; Reviewed

Probab=93.77  E-value=1.6  Score=45.43  Aligned_cols=98  Identities=13%  Similarity=0.220  Sum_probs=66.0

Q ss_pred             CCeEEEEEEeeCc-hhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHh-hc-
Q 012814          266 KGYSVVNVKCRDR-AKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIR-RR-  342 (456)
Q Consensus       266 ~~~~~v~V~~~Dr-~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~-~r-  342 (456)
                      .+...|+|.+.+. +|.++++...|+++|+||.......  ..  -.|.+..         ...+++++.|.+.-. -. 
T Consensus       269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~--~~--is~~v~~---------~~~~~a~~~l~~~~~~v~~  335 (403)
T PRK08210        269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP--TE--VVFTVSD---------EDSEKAKEILENLGLKPSV  335 (403)
T ss_pred             CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC--ce--EEEEEcH---------HHHHHHHHHHHHhCCcEEE
Confidence            3456777776555 9999999999999999998774332  11  2355532         223344444443210 01 


Q ss_pred             CCCceEEEEEeC---CCcchHHHHHHHHHHCCceEEE
Q 012814          343 VSEGLSLELCAK---DRVGLLSEVTRILRENGLSVTR  376 (456)
Q Consensus       343 ~~~~~~lev~~~---DrpGlL~~It~~l~~~gi~I~~  376 (456)
                      ..+...|.|.|.   ++||++.++.++|++.|++|..
T Consensus       336 ~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        336 RENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             eCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence            124566777775   7999999999999999999975

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=93.45  E-value=0.35  Score=45.66  Aligned_cols=61  Identities=13%  Similarity=0.232  Sum_probs=43.5

Q ss_pred             CceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHH
Q 012814          345 EGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEA  407 (456)
Q Consensus       345 ~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~  407 (456)
                      ..+.+-+.-.||||.+..|+.+|.++||||....+........-.-.+ .. ..+++++.+++
T Consensus       147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl-~v-D~~v~~~vl~~  207 (208)
T TIGR00719       147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTI-EI-DKNIDDHIKDA  207 (208)
T ss_pred             CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEE-Ee-CCCCCHHHHhh
Confidence            345678888999999999999999999999999998764333322323 22 34666555443

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=93.26  E-value=0.44  Score=53.14  Aligned_cols=64  Identities=20%  Similarity=0.276  Sum_probs=50.0

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC--CceeEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (456)
Q Consensus       127 ~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~--~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~  197 (456)
                      -...|.|.+.||+|||++|+.++++.++||..+.+.+.  ++.+...|.+.-.       +..++.+|-..|+
T Consensus       665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~-------~~~~L~~l~~~L~  730 (743)
T PRK10872        665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIY-------NLQVLGRVLGKLN  730 (743)
T ss_pred             eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence            45689999999999999999999999999999998874  4555555555442       3466777766665

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=93.13  E-value=0.53  Score=35.80  Aligned_cols=63  Identities=13%  Similarity=0.163  Sum_probs=45.4

Q ss_pred             EEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhhh
Q 012814          350 ELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTML  417 (456)
Q Consensus       350 ev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~~  417 (456)
                      .|.-+||||-|..+++++.+ |.||....=...+.....++..-...+    +++++++.++|.+...
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~----~~~~~~i~~~L~~~G~   64 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPD----REDLAELKERLEALGY   64 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCC----HHHHHHHHHHHHHcCC
Confidence            56779999999999999999 999998876655533344444433322    3677888888877654

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=92.76  E-value=0.99  Score=35.03  Aligned_cols=47  Identities=11%  Similarity=0.183  Sum_probs=38.8

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEe
Q 012814          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND  176 (456)
Q Consensus       130 ~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~  176 (456)
                      .+-+..+|+||-|+++-..|+.+|+|+....... .+....-.|||.-
T Consensus         2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~   49 (74)
T cd04904           2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC   49 (74)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence            3455668999999999999999999999988776 4455677888876

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=92.75  E-value=0.46  Score=46.66  Aligned_cols=55  Identities=18%  Similarity=0.347  Sum_probs=45.1

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeee-EEEEEeCCCCCCC
Q 012814          346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVN-VFYVRDASGNPVD  401 (456)
Q Consensus       346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d-~F~v~d~~g~~l~  401 (456)
                      .|.|-+..+|+||-|+++-..|+.+|||+.+.+..-.+..-++ .||| |..|..-+
T Consensus       194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i-D~eg~~~~  249 (279)
T COG0077         194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI-DIEGHIDD  249 (279)
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE-EEecCcCc
Confidence            5778888889999999999999999999999998877666555 7777 66676533

>PRK08210 aspartate kinase I; Reviewed

Probab=92.66  E-value=3.3  Score=43.10  Aligned_cols=99  Identities=17%  Similarity=0.265  Sum_probs=65.2

Q ss_pred             CeEEEEEEecCC-cchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCc
Q 012814           34 ECTVVKVDSVNK-PGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGA  112 (456)
Q Consensus        34 ~~~~V~V~~~Dr-pGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~~~  112 (456)
                      +...|+|...+. ||.++++.+.|.++|+||.-...+..  .  -.|.+...         ..+.+.+.|... ..    
T Consensus       270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~--~--is~~v~~~---------~~~~a~~~l~~~-~~----  331 (403)
T PRK08210        270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPT--E--VVFTVSDE---------DSEKAKEILENL-GL----  331 (403)
T ss_pred             CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCc--e--EEEEEcHH---------HHHHHHHHHHHh-CC----
Confidence            445677776555 99999999999999999997644422  1  13555321         122333333331 10    


Q ss_pred             ccCCcccccccCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEE
Q 012814          113 KTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAA  158 (456)
Q Consensus       113 ~~~~~~~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~  158 (456)
                            .  .....+...|.|.|.   ++||+++++..+|++.|+||..
T Consensus       332 ------~--v~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        332 ------K--PSVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             ------c--EEEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence                  0  112335677778775   7899999999999999999974

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=92.58  E-value=0.56  Score=35.54  Aligned_cols=46  Identities=26%  Similarity=0.455  Sum_probs=35.6

Q ss_pred             CceEEEEEEeC----CcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEe
Q 012814          126 GDHTAIELIGR----DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (456)
Q Consensus       126 ~~~t~i~v~~~----DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~  176 (456)
                      .+...|+|.++    |.||+++.++..|++.|+||....     ....+.+.|..
T Consensus         4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is-----S~~~~~ilV~~   53 (65)
T PF13840_consen    4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS-----SEISISILVKE   53 (65)
T ss_dssp             SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE-----ESSEEEEEEEG
T ss_pred             CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE-----EeeeEEEEEeH
Confidence            35678888887    899999999999999999998777     23445566655

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=92.39  E-value=0.66  Score=51.65  Aligned_cols=64  Identities=13%  Similarity=0.207  Sum_probs=49.2

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC-ceeEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (456)
Q Consensus       127 ~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~-~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~  197 (456)
                      -...|.|.+.||+|+|++|+.+++..++||.++.+.+.. +.+...|.+.-.       +..++.+|-..|+
T Consensus       625 ~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~-------~~~~L~~i~~~Lr  689 (702)
T PRK11092        625 FIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTAR-------DRVHLANIMRKIR  689 (702)
T ss_pred             eEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence            466899999999999999999999999999999988764 444545555442       3456677766655

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=92.18  E-value=0.47  Score=44.80  Aligned_cols=54  Identities=20%  Similarity=0.287  Sum_probs=43.0

Q ss_pred             cCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec--CCceeEEEEEEEe
Q 012814          123 HSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVND  176 (456)
Q Consensus       123 ~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T--~~~~~~d~F~v~~  176 (456)
                      +-.+....+-+.-.|+||.+..|+..|.++|+||...++..  .++.+.-+..+..
T Consensus       143 d~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~  198 (208)
T TIGR00719       143 EFRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDK  198 (208)
T ss_pred             EecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCC
Confidence            33455677788889999999999999999999999999987  4566665555533

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=92.06  E-value=0.51  Score=42.40  Aligned_cols=47  Identities=17%  Similarity=0.442  Sum_probs=37.9

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEe
Q 012814          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (456)
Q Consensus       130 ~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~  176 (456)
                      -+.+.+.++||.|.++++.++++|.||..++.+..++.-....|..-
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEi   50 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEI   50 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEe
Confidence            46788999999999999999999999999999985554344444444

>PRK06291 aspartate kinase; Provisional

Probab=92.05  E-value=4.4  Score=43.02  Aligned_cols=111  Identities=14%  Similarity=0.216  Sum_probs=71.8

Q ss_pred             CeEEEEEEec---CCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 012814           34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA  110 (456)
Q Consensus        34 ~~~~V~V~~~---DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~  110 (456)
                      +...|+|.+.   +.+|+++++..+|+++|++|.--...+.. ..+ .|.|...+     -+...+.|++.+.....   
T Consensus       320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse-~sI-sf~V~~~d-----~~~av~~L~~~~~~~~~---  389 (465)
T PRK06291        320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE-SNI-SLVVDEAD-----LEKALKALRREFGEGLV---  389 (465)
T ss_pred             CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC-ceE-EEEEeHHH-----HHHHHHHHHHHHHHhcC---
Confidence            3457778764   68999999999999999999865433322 222 25554211     01244555555543110   


Q ss_pred             CcccCCcccccccCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEec
Q 012814          111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWT  163 (456)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~a~i~T  163 (456)
                             ..  ..-..+...|.|.|.   +++|+++++..+|.+.|+||.-....+
T Consensus       390 -------~~--i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgs  436 (465)
T PRK06291        390 -------RD--VTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGS  436 (465)
T ss_pred             -------cc--eEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEecc
Confidence                   00  112335778888886   799999999999999999998555433

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=91.94  E-value=0.85  Score=50.92  Aligned_cols=63  Identities=29%  Similarity=0.276  Sum_probs=49.2

Q ss_pred             EEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEec--CCceEEEEEEEccCCCCCCCHHHHHHHHHHHHH
Q 012814          269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD--GPHASQEYYIRHMDGCILDTEGEKERVIKCLEA  337 (456)
Q Consensus       269 ~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~--~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~  337 (456)
                      ..|.|.+.||+|+|++|+.++++.++||...++.+.  ++.+.-.|.|.      +.+-..+++|.+.|.+
T Consensus       667 v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie------V~~~~~L~~l~~~L~~  731 (743)
T PRK10872        667 LVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE------IYNLQVLGRVLGKLNQ  731 (743)
T ss_pred             EEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE------ECCHHHHHHHHHHHhc
Confidence            578899999999999999999999999999999775  46655455552      3344677777777654

>PRK09034 aspartate kinase; Reviewed

Probab=91.88  E-value=4.3  Score=43.00  Aligned_cols=107  Identities=13%  Similarity=0.240  Sum_probs=68.7

Q ss_pred             CeEEEEEEe---eCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh-c
Q 012814          267 GYSVVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR-R  342 (456)
Q Consensus       267 ~~~~v~V~~---~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~-r  342 (456)
                      +.+.|++.+   ++++|+++++...|+++|++|.-.   +.+..-+ .|.|...+   . +...+..+.+.|+..+.. .
T Consensus       307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~ss~~si-s~~v~~~~---~-~~a~~~~l~~el~~~~~~~~  378 (454)
T PRK09034        307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---PSGIDDL-SIIIRERQ---L-TPKKEDEILAEIKQELNPDE  378 (454)
T ss_pred             CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---cCCCcEE-EEEEeHHH---h-hHHHHHHHHHHHHHhhCCce
Confidence            456777775   678999999999999999999875   2222222 46664321   0 000113333334332211 0


Q ss_pred             ---CCCceEEEEEeC---CCcchHHHHHHHHHHCCceEEEEEEee
Q 012814          343 ---VSEGLSLELCAK---DRVGLLSEVTRILRENGLSVTRAGVST  381 (456)
Q Consensus       343 ---~~~~~~lev~~~---DrpGlL~~It~~l~~~gi~I~~a~i~T  381 (456)
                         ..+-..|.+.|.   ++||++++|..+|.+.|++|....-.+
T Consensus       379 I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~  423 (454)
T PRK09034        379 LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS  423 (454)
T ss_pred             EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence               124567888654   789999999999999999998875433

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=91.79  E-value=3.5  Score=47.02  Aligned_cols=102  Identities=10%  Similarity=0.162  Sum_probs=69.3

Q ss_pred             CCeEEEEEEee---CchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHH---
Q 012814          266 KGYSVVNVKCR---DRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAI---  339 (456)
Q Consensus       266 ~~~~~v~V~~~---Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l---  339 (456)
                      ++...|+|.|.   +++|++.++..+|+++|++|.-....+ ...-+ .|.|..         ...++..+.|.+.+   
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss-Se~sI-sf~V~~---------~d~~~av~~L~~~f~~e  381 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS-SEYSI-SFCVPQ---------SDAAKAKRALEEEFALE  381 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC-CCceE-EEEEeH---------HHHHHHHHHHHHHHHHH
Confidence            46678888865   679999999999999999996554332 22222 355533         22333344444433   


Q ss_pred             -hh-c------CCCceEEEEEeC---CCcchHHHHHHHHHHCCceEEEEE
Q 012814          340 -RR-R------VSEGLSLELCAK---DRVGLLSEVTRILRENGLSVTRAG  378 (456)
Q Consensus       340 -~~-r------~~~~~~lev~~~---DrpGlL~~It~~l~~~gi~I~~a~  378 (456)
                       .. .      ..+...|.|.|.   ++||++.++..+|.+.|++|....
T Consensus       382 l~~~~~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is  431 (819)
T PRK09436        382 LKEGLLEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA  431 (819)
T ss_pred             hccCCcceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence             21 1      124567888886   789999999999999999997654

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=91.51  E-value=0.94  Score=50.42  Aligned_cols=64  Identities=19%  Similarity=0.204  Sum_probs=48.8

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC-ceeEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (456)
Q Consensus       127 ~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~-~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~  197 (456)
                      -.+.|.|.+.||+|+|++|+.+++..++||.+.++.+.. +.+.-.|.+.-.       +-.++.+|-..|.
T Consensus       609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~-------~~~~L~~ii~~L~  673 (683)
T TIGR00691       609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIK-------NYKHLLKIMLKIK  673 (683)
T ss_pred             eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence            467899999999999999999999999999999998763 545444545432       3456666666554

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=91.50  E-value=1.2  Score=33.77  Aligned_cols=35  Identities=14%  Similarity=0.244  Sum_probs=29.7

Q ss_pred             CCeEEEEEEee----CchhHHHHHHHHHHhCCcEEEEEE
Q 012814          266 KGYSVVNVKCR----DRAKLMFDIVCTLTDMQYVVFHAA  300 (456)
Q Consensus       266 ~~~~~v~V~~~----Dr~gll~~i~~~L~~~~l~I~~a~  300 (456)
                      .+...|+|.|+    |.||++++++..|++.|++|....
T Consensus         4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is   42 (65)
T PF13840_consen    4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS   42 (65)
T ss_dssp             SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred             CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence            35567899988    799999999999999999998666

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=91.30  E-value=0.61  Score=41.90  Aligned_cols=45  Identities=20%  Similarity=0.218  Sum_probs=37.0

Q ss_pred             EEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE-eCC-EEEEEEEE
Q 012814           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGG-WFMDVFHV   81 (456)
Q Consensus        37 ~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~~g-~~~d~f~V   81 (456)
                      -+.+.+.|+||.|.+++++++++|.||.-++.+. .+| ...--|.+
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEi   50 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEI   50 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEe
Confidence            4788999999999999999999999999999997 444 44433434

>PRK09034 aspartate kinase; Reviewed

Probab=91.27  E-value=5.5  Score=42.19  Aligned_cols=110  Identities=18%  Similarity=0.210  Sum_probs=68.9

Q ss_pred             eEEEEEEe---cCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCC
Q 012814           35 CTVVKVDS---VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAG  111 (456)
Q Consensus        35 ~~~V~V~~---~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~~  111 (456)
                      .+.|++.+   ++++|.++++.+.|+++|++|.--   +.+...+ .|.|.+.+   ... .....+...|...+..   
T Consensus       308 i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~ss~~si-s~~v~~~~---~~~-a~~~~l~~el~~~~~~---  376 (454)
T PRK09034        308 FTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---PSGIDDL-SIIIRERQ---LTP-KKEDEILAEIKQELNP---  376 (454)
T ss_pred             EEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---cCCCcEE-EEEEeHHH---hhH-HHHHHHHHHHHHhhCC---
Confidence            45666664   678999999999999999999864   2222222 46665321   100 0112333333322110   


Q ss_pred             cccCCcccccccCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEec
Q 012814          112 AKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWT  163 (456)
Q Consensus       112 ~~~~~~~~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~a~i~T  163 (456)
                            ..  .....+...|++.|.   ++||+++++..+|+++|+||.-....+
T Consensus       377 ------~~--I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~  423 (454)
T PRK09034        377 ------DE--LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS  423 (454)
T ss_pred             ------ce--EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence                  00  112345778888654   789999999999999999998876544

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=91.14  E-value=0.14  Score=41.08  Aligned_cols=33  Identities=12%  Similarity=0.081  Sum_probs=29.8

Q ss_pred             EEEEEeeC-chhHHHHHHHHHHhCCcEEEEEEEE
Q 012814          270 VVNVKCRD-RAKLMFDIVCTLTDMQYVVFHAAIS  302 (456)
Q Consensus       270 ~v~V~~~D-r~gll~~i~~~L~~~~l~I~~a~i~  302 (456)
                      +|+|.|+| +.|++++++++|+++|+||.+.+-.
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l   34 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRL   34 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHh
Confidence            37999999 9999999999999999999876653

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=90.78  E-value=1  Score=35.20  Aligned_cols=46  Identities=17%  Similarity=0.229  Sum_probs=38.4

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEe
Q 012814          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND  176 (456)
Q Consensus       131 i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~  176 (456)
                      +-+..+|+||-|+++-..|+.+|+|+....... .+....-.|||.-
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~   49 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC   49 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence            445568999999999999999999999988877 4555677888876

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11899 prephenate dehydratase; Provisional

Probab=90.61  E-value=1.9  Score=42.58  Aligned_cols=50  Identities=18%  Similarity=0.158  Sum_probs=43.2

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEeC
Q 012814          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDD  177 (456)
Q Consensus       128 ~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~~  177 (456)
                      .|.|-+..+|+||.|+++-.+|+.+|+|+.+..... .++...=+||+.-.
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~e  244 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIE  244 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEE
Confidence            677888889999999999999999999999998876 45557779999873

>PRK06382 threonine dehydratase; Provisional

Probab=90.45  E-value=1.7  Score=45.31  Aligned_cols=67  Identities=28%  Similarity=0.243  Sum_probs=48.8

Q ss_pred             CCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEe----c-CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814          124 SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW----T-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (456)
Q Consensus       124 ~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~----T-~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~  197 (456)
                      .....+.+.|.-+|+||-|.+|+..|.++|+||.+....    . ..+...-+|.+...       +++..+.|.+.|.
T Consensus       326 ~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-------~~~~~~~v~~~L~  397 (406)
T PRK06382        326 NLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-------GQDHLDRILNALR  397 (406)
T ss_pred             hcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-------CHHHHHHHHHHHH
Confidence            355688999999999999999999999999999887764    2 23445556666552       2344456665554

>TIGR00657 asp_kinases aspartate kinase

Probab=90.45  E-value=6.1  Score=41.60  Aligned_cols=101  Identities=13%  Similarity=0.157  Sum_probs=65.1

Q ss_pred             CeEEEEEEeeCc--hhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhc--
Q 012814          267 GYSVVNVKCRDR--AKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRR--  342 (456)
Q Consensus       267 ~~~~v~V~~~Dr--~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~r--  342 (456)
                      +...|+|.+.+-  +|++.++..+|+++|++|......+. ...+ .|.|..         ...++..+.|.......  
T Consensus       301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~s-e~sI-s~~I~~---------~~~~~a~~~L~~~~~~~~~  369 (441)
T TIGR00657       301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSS-ETSI-SFTVDK---------EDADQAKTLLKSELNLSAL  369 (441)
T ss_pred             CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCC-CceE-EEEEEH---------HHHHHHHHHHHHHHHhcCc
Confidence            456777776443  69999999999999999976642222 2222 355532         11222223332211111  


Q ss_pred             -----CCCceEEEEEeC---CCcchHHHHHHHHHHCCceEEEEE
Q 012814          343 -----VSEGLSLELCAK---DRVGLLSEVTRILRENGLSVTRAG  378 (456)
Q Consensus       343 -----~~~~~~lev~~~---DrpGlL~~It~~l~~~gi~I~~a~  378 (456)
                           ..+-..|.+.+.   ++||++++|.++|++.|++|....
T Consensus       370 ~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       370 SSVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             ceEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence                 124467888654   789999999999999999998775

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=90.33  E-value=1.8  Score=48.22  Aligned_cols=74  Identities=14%  Similarity=0.170  Sum_probs=52.4

Q ss_pred             EEEecCCCC-CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEe-CCEEEEEEEEEeCCCCCCCChhHHHHHHHHH
Q 012814           25 ASVDNSSCP-ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-GGWFMDVFHVIDQQGKKITDGKTIDYIEKAL  102 (456)
Q Consensus        25 V~v~~~~~~-~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~-~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L  102 (456)
                      |.++..... -.+.|.|.+.||+|+|++|+.+++..++||.+....+. ++.+...|.+.-      .+-+.++.|-..|
T Consensus       615 v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV------~~~~~L~~i~~~L  688 (702)
T PRK11092        615 VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA------RDRVHLANIMRKI  688 (702)
T ss_pred             eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE------CCHHHHHHHHHHH
Confidence            456543222 24578999999999999999999999999999998775 456555555542      1224566666666


Q ss_pred             CC
Q 012814          103 GP  104 (456)
Q Consensus       103 ~~  104 (456)
                      ..
T Consensus       689 r~  690 (702)
T PRK11092        689 RV  690 (702)
T ss_pred             hC
Confidence            55

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=90.22  E-value=0.76  Score=44.00  Aligned_cols=67  Identities=21%  Similarity=0.342  Sum_probs=47.1

Q ss_pred             CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEE--EEEEEeCCCCCcCCChHHHHHHHHHHHHHh
Q 012814          126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIAC--VLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (456)
Q Consensus       126 ~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d--~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L  200 (456)
                      ....+|.+...|-||+|++|+++|+..|.||.+.-+--....+..  +..+.+.        ..-+++.++.|++..
T Consensus        75 ~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gt--------d~VveQa~rQiedlV  143 (309)
T KOG2663|consen   75 VKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGT--------DGVVEQARRQIEDLV  143 (309)
T ss_pred             ccceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEecc--------HHHHHHHHHHHHHhh
Confidence            356788999999999999999999999999999887654333332  4455552        233455555555433

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=90.08  E-value=0.64  Score=48.54  Aligned_cols=60  Identities=25%  Similarity=0.419  Sum_probs=46.1

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHH
Q 012814          346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALR  409 (456)
Q Consensus       346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~  409 (456)
                      .+.|-+.-.|+||.+..|+.+|+++|+||...+..+.|+.+--+|   +.++ +++++.+++|+
T Consensus       338 ~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~ii---e~D~-~~~~~~~~~i~  397 (409)
T PRK11790        338 GHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVI---DVDA-DYAEEALDALK  397 (409)
T ss_pred             CceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEE---EeCC-CCcHHHHHHHH
Confidence            467888999999999999999999999999999988886665444   4444 44444444444

>PLN02317 arogenate dehydratase

Probab=89.93  E-value=3  Score=42.96  Aligned_cols=67  Identities=13%  Similarity=0.203  Sum_probs=47.5

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCce---------------eeeEEEEEeCCCCCCChHHHHHHHH
Q 012814          346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQ---------------AVNVFYVRDASGNPVDMKTIEALRK  410 (456)
Q Consensus       346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~---------------~~d~F~v~d~~g~~l~~~~~~~L~~  410 (456)
                      .|.|-+.-.|+||.|+++-.+|+.+|||+.+.+......+               -.=.||| |.+|..-+ ...+..-+
T Consensus       283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyV-D~eg~~~d-~~~~~aL~  360 (382)
T PLN02317        283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYV-DFEASMAD-PRAQNALA  360 (382)
T ss_pred             cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEE-EEEcCcCC-HHHHHHHH
Confidence            4667777789999999999999999999999987765443               2338888 55565433 33344444


Q ss_pred             HHHH
Q 012814          411 EIGH  414 (456)
Q Consensus       411 ~l~~  414 (456)
                      .|.+
T Consensus       361 ~L~~  364 (382)
T PLN02317        361 HLQE  364 (382)
T ss_pred             HHHH
Confidence            4544

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=89.88  E-value=2  Score=47.86  Aligned_cols=64  Identities=9%  Similarity=0.189  Sum_probs=48.8

Q ss_pred             eEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecC-CceEEEEEEEccCCCCCCCHHHHHHHHHHHHH
Q 012814          268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDG-PHASQEYYIRHMDGCILDTEGEKERVIKCLEA  337 (456)
Q Consensus       268 ~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~-g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~  337 (456)
                      ...|.|.+.||+|+|++|+.+++..++||.+.++.+.+ +.+.-.|.|.      +.+-..+..|...|..
T Consensus       610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ie------V~~~~~L~~ii~~L~~  674 (683)
T TIGR00691       610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVE------IKNYKHLLKIMLKIKT  674 (683)
T ss_pred             EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEE------ECCHHHHHHHHHHHhC
Confidence            45788999999999999999999999999999998764 5544345442      3344677777776653

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PRK08818 prephenate dehydrogenase; Provisional

Probab=89.83  E-value=0.69  Score=47.56  Aligned_cols=50  Identities=18%  Similarity=0.267  Sum_probs=39.1

Q ss_pred             CceEEEEEeC-CCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeC
Q 012814          345 EGLSLELCAK-DRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDA  395 (456)
Q Consensus       345 ~~~~lev~~~-DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~  395 (456)
                      ..+.|-+.-+ |+||.|++|+.+|+++||||.+.++ ......+-.|||.-.
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~~  344 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGFE  344 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEEe
Confidence            3466777776 9999999999999999999999998 433333434998544

>PRK06545 prephenate dehydrogenase; Validated

Probab=89.66  E-value=2.2  Score=43.64  Aligned_cols=51  Identities=24%  Similarity=0.290  Sum_probs=42.7

Q ss_pred             CceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeC
Q 012814          345 EGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDA  395 (456)
Q Consensus       345 ~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~  395 (456)
                      ..+.|.|.-+||||-|++|+..|.+.||||++.+|.-.-+....++.++..
T Consensus       289 ~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~  339 (359)
T PRK06545        289 SFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFK  339 (359)
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeC
Confidence            457899999999999999999999999999999996665566666666544

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=89.33  E-value=3.2  Score=33.08  Aligned_cols=59  Identities=15%  Similarity=0.228  Sum_probs=37.7

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEeCCCCCcCCC-hHHHHHHHHHHH
Q 012814          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGD-QTRLSLMEEQLK  197 (456)
Q Consensus       130 ~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~~~~g~~l~d-~~~~~~l~~~L~  197 (456)
                      ++.|.-+|+||=|++++.+|+  +.||....-.. ..+.+.-.+.+..+       + ++..+.+.+.|.
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~-------~~~~~~~~i~~~L~   63 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVA-------NGAEELAELLEDLK   63 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeC-------CcHHHHHHHHHHHH
Confidence            578889999999999999999  56666444333 22344434444442       2 355666666654

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=88.94  E-value=0.79  Score=47.85  Aligned_cols=50  Identities=26%  Similarity=0.332  Sum_probs=44.3

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEe
Q 012814          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (456)
Q Consensus       127 ~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~  176 (456)
                      ....|.+.-.|+||.++.|+..|+++|+||...+..+.++.+.-+|-+..
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D~  386 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVDA  386 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeCC
Confidence            56788889999999999999999999999999999999988877776644

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=88.80  E-value=2.7  Score=41.43  Aligned_cols=50  Identities=16%  Similarity=0.252  Sum_probs=43.8

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEe
Q 012814          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND  176 (456)
Q Consensus       127 ~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~  176 (456)
                      ..|.|-+..+|+||-|+++-+.|+.+|+|+......- .++...=+||+.-
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~  243 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI  243 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE
Confidence            5888888889999999999999999999999988876 5566777888877

>PRK06545 prephenate dehydrogenase; Validated

Probab=88.79  E-value=1.5  Score=44.95  Aligned_cols=52  Identities=15%  Similarity=0.277  Sum_probs=43.1

Q ss_pred             CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEe
Q 012814          125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (456)
Q Consensus       125 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~  176 (456)
                      -+.++.+.|.-+|+||-+++|+..|...|+||.+.+|.-..+...-++.++-
T Consensus       287 ~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~  338 (359)
T PRK06545        287 IPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISF  338 (359)
T ss_pred             CCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEe
Confidence            3568999999999999999999999999999999999764455555555554

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=88.74  E-value=2.1  Score=47.28  Aligned_cols=66  Identities=27%  Similarity=0.347  Sum_probs=48.7

Q ss_pred             CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEE-EEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814          125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIAC-VLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (456)
Q Consensus       125 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d-~F~v~~~~~g~~l~d~~~~~~l~~~L~  197 (456)
                      ..-.+.|.|.+.||+|+|.+|+.+|+..++||......+..++... .|.+.-.       |-..+.+|-..|.
T Consensus       624 ~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~-------n~~~L~~i~~~l~  690 (701)
T COG0317         624 QVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVK-------NLNHLGRVLARLK  690 (701)
T ss_pred             cceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEEC-------cHHHHHHHHHHHh
Confidence            3457889999999999999999999999999999999886544433 3333331       3355666655554

>PLN02551 aspartokinase

Probab=88.71  E-value=14  Score=39.88  Aligned_cols=104  Identities=14%  Similarity=0.213  Sum_probs=66.5

Q ss_pred             CCeEEEEEEee---CchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHH---HH
Q 012814          266 KGYSVVNVKCR---DRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEA---AI  339 (456)
Q Consensus       266 ~~~~~v~V~~~---Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~---~l  339 (456)
                      ++.+.|+|.+.   +.+|.++++...|+++|++|.-..  + ...- -.|.+...+-.     . .+.+++.+.+   .+
T Consensus       364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--s-Se~s-Is~~v~~~~~~-----~-~~~i~~~l~~l~~el  433 (521)
T PLN02551        364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--T-SEVS-ISLTLDPSKLW-----S-RELIQQELDHLVEEL  433 (521)
T ss_pred             CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe--c-cCCE-EEEEEehhHhh-----h-hhhHHHHHHHHHHHh
Confidence            35677888765   689999999999999999998662  2 2222 23666432211     1 1122222222   12


Q ss_pred             hh--c---CCCceEEEEEeC--CCcchHHHHHHHHHHCCceEEEEEE
Q 012814          340 RR--R---VSEGLSLELCAK--DRVGLLSEVTRILRENGLSVTRAGV  379 (456)
Q Consensus       340 ~~--r---~~~~~~lev~~~--DrpGlL~~It~~l~~~gi~I~~a~i  379 (456)
                      .+  +   ..+...|.|.|.  .+||++.++..+|.+.||+|.....
T Consensus       434 ~~~~~V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsq  480 (521)
T PLN02551        434 EKIAVVNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQ  480 (521)
T ss_pred             hcCCeEEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEe
Confidence            21  1   123456666654  6899999999999999999987664

>PRK09181 aspartate kinase; Validated

Probab=88.66  E-value=8  Score=41.24  Aligned_cols=102  Identities=17%  Similarity=0.160  Sum_probs=69.3

Q ss_pred             CeEEEEEEee---CchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh-c
Q 012814          267 GYSVVNVKCR---DRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR-R  342 (456)
Q Consensus       267 ~~~~v~V~~~---Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~-r  342 (456)
                      +.+.|+|.+.   +.+|+..++..+|.++|++|.  .+.+. .. --.|.|...       ....+++.+.|++.+.. .
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss-~~-sis~~v~~~-------~~~~~~~~~~L~~~~~~~~  396 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATN-AN-TITHYLWGS-------LKTLKRVIAELEKRYPNAE  396 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEec-Cc-EEEEEEcCC-------hHHHHHHHHHHHHhcCCce
Confidence            5677788654   689999999999999999997  22222 21 223555321       12334555555544421 1


Q ss_pred             --CCCceEEEEEeCC--CcchHHHHHHHHHHCCceEEEEEE
Q 012814          343 --VSEGLSLELCAKD--RVGLLSEVTRILRENGLSVTRAGV  379 (456)
Q Consensus       343 --~~~~~~lev~~~D--rpGlL~~It~~l~~~gi~I~~a~i  379 (456)
                        ..+-..|.+.|..  +||+.+++..+|.+.||||....-
T Consensus       397 i~~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~q  437 (475)
T PRK09181        397 VTVRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQ  437 (475)
T ss_pred             EEECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEe
Confidence              2345678888765  899999999999999999987653

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=88.61  E-value=2.3  Score=47.06  Aligned_cols=73  Identities=18%  Similarity=0.193  Sum_probs=51.7

Q ss_pred             EEEecC-CCCeEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecCCc-eEEEEEEEccCCCCCCCHHHHHHHHHHHH
Q 012814          259 TVERLE-DKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPH-ASQEYYIRHMDGCILDTEGEKERVIKCLE  336 (456)
Q Consensus       259 ~v~n~~-~~~~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~-~~d~f~V~~~~g~~~~~~~~~~~l~~~L~  336 (456)
                      .|++.. ..-...|.|.+-||+|+|++|+.+|+..+.||......+.++. +.-.|.+.      +.+-..+.+|...|.
T Consensus       617 ~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~------v~n~~~L~~i~~~l~  690 (701)
T COG0317         617 SWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE------VKNLNHLGRVLARLK  690 (701)
T ss_pred             EecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE------ECcHHHHHHHHHHHh
Confidence            444442 3445689999999999999999999999999999999886443 33233332      233456667766665


Q ss_pred             H
Q 012814          337 A  337 (456)
Q Consensus       337 ~  337 (456)
                      +
T Consensus       691 ~  691 (701)
T COG0317         691 Q  691 (701)
T ss_pred             c
Confidence            3

>PRK06349 homoserine dehydrogenase; Provisional

Probab=88.50  E-value=2  Score=45.19  Aligned_cols=65  Identities=22%  Similarity=0.340  Sum_probs=47.2

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814          346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGH  414 (456)
Q Consensus       346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~  414 (456)
                      .+.|.+...|+||.|++|+.+|.++|++|.+..-.........++++++..    +...++++.++|.+
T Consensus       348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~~----~e~~l~~~i~~L~~  412 (426)
T PRK06349        348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHET----SEAALRAALAAIEA  412 (426)
T ss_pred             eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEeC----CHHHHHHHHHHHhc
Confidence            578999999999999999999999999999886554333345566676532    23455555555554

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=87.95  E-value=3.7  Score=32.66  Aligned_cols=30  Identities=7%  Similarity=0.006  Sum_probs=24.6

Q ss_pred             EEEEEeeCchhHHHHHHHHHHhCCcEEEEEEE
Q 012814          270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAI  301 (456)
Q Consensus       270 ~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i  301 (456)
                      ++.|.-|||||-|.+++.+|.  +.||.+..-
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y   32 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNY   32 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEE
Confidence            477889999999999999999  667764443

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06382 threonine dehydratase; Provisional

Probab=87.94  E-value=2.6  Score=43.97  Aligned_cols=68  Identities=18%  Similarity=0.232  Sum_probs=47.6

Q ss_pred             CceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeec----C-ceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhhh
Q 012814          345 EGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTV----G-EQAVNVFYVRDASGNPVDMKTIEALRKEIGHTML  417 (456)
Q Consensus       345 ~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~----g-~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~~  417 (456)
                      +.+.+.|.-+|+||.|.+|+++|.++|+||.+.....+    . +.+.=+|.|. ..+    +...++|.+.|.+...
T Consensus       329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~ve-t~~----~~~~~~v~~~L~~~Gy  401 (406)
T PRK06382        329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVN-VRG----QDHLDRILNALREMGY  401 (406)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEE-eCC----HHHHHHHHHHHHHCCC
Confidence            45789999999999999999999999999988776421    1 2233344442 211    3455678888777644

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=87.82  E-value=1.8  Score=38.82  Aligned_cols=61  Identities=16%  Similarity=0.260  Sum_probs=39.6

Q ss_pred             eEEEEEe--CCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHH
Q 012814          347 LSLELCA--KDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALR  409 (456)
Q Consensus       347 ~~lev~~--~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~  409 (456)
                      -++++..  ++.||+++.|+..++++||+|..+-..-..-..+-..+|-  ..+|+....+.+|+
T Consensus        94 gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IV--te~~iP~~li~el~  156 (167)
T COG2150          94 GVIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIV--TERPIPGDLIDELK  156 (167)
T ss_pred             eEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEE--EeccCCHHHHHHHh
Confidence            3566665  5679999999999999999999997543322233334442  13366644444443

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=87.80  E-value=22  Score=37.56  Aligned_cols=105  Identities=9%  Similarity=0.080  Sum_probs=66.6

Q ss_pred             CCeEEEEEEeeC---chhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhc
Q 012814          266 KGYSVVNVKCRD---RAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRR  342 (456)
Q Consensus       266 ~~~~~v~V~~~D---r~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~r  342 (456)
                      ++...|+|.++.   ++|.++++...|+++|+||..-........  -.|.+...+.     +...+.+.+.+.+.+. +
T Consensus       305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~-----~~a~~~l~~~~~~~~~-~  376 (447)
T COG0527         305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDA-----PRALRALLEEKLELLA-E  376 (447)
T ss_pred             CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhH-----HHHHHHHHHHHhhhcc-e
Confidence            566778887543   459999999999999999975544333222  2466632111     1222333333222221 1


Q ss_pred             C---CCceEEEEEeC---CCcchHHHHHHHHHHCCceEEEEE
Q 012814          343 V---SEGLSLELCAK---DRVGLLSEVTRILRENGLSVTRAG  378 (456)
Q Consensus       343 ~---~~~~~lev~~~---DrpGlL~~It~~l~~~gi~I~~a~  378 (456)
                      .   ..--.|.+.|.   ..||+.+++.++|++.++||....
T Consensus       377 v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is  418 (447)
T COG0527         377 VEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS  418 (447)
T ss_pred             EEeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence            1   12345666665   679999999999999999999877

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=87.64  E-value=2.2  Score=36.36  Aligned_cols=49  Identities=12%  Similarity=0.049  Sum_probs=40.5

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC-CceeEEEEEEEe
Q 012814          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVND  176 (456)
Q Consensus       128 ~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~-~~~~~d~F~v~~  176 (456)
                      .+.|-+..+|+||-|+++-..|+.+|+|+........ +....-.|||.-
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi   90 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC   90 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence            5777777799999999999999999999999887774 344556788765

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08198 threonine dehydratase; Provisional

Probab=87.09  E-value=4.8  Score=41.85  Aligned_cols=38  Identities=26%  Similarity=0.365  Sum_probs=34.5

Q ss_pred             CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 012814          125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW  162 (456)
Q Consensus       125 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~  162 (456)
                      ......+.|.-+|+||-|.++...++++|.||.+....
T Consensus       324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~  361 (404)
T PRK08198        324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD  361 (404)
T ss_pred             cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence            45677999999999999999999999999999998765

>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase

Probab=87.04  E-value=4.6  Score=48.71  Aligned_cols=103  Identities=17%  Similarity=0.230  Sum_probs=75.1

Q ss_pred             CCCCCCCCChH----HHHHHhhc---CCCEEEEecCC--CCCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE--
Q 012814            2 ANAYWPYFDPE----YESLSLRI---NPPRASVDNSS--CPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--   70 (456)
Q Consensus         2 ~~~Y~~~~~~~----~~~~~~~~---~~p~V~v~~~~--~~~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t--   70 (456)
                      +.+|-..|+|+    +..+++++   ++..+.+....  .++.+.+.++.+.++..|+++.-+|..+|+.|.+.+-+.  
T Consensus       447 p~~Yre~f~p~~Av~Di~~le~l~~~~~~~~~l~~~~~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~  526 (1528)
T PF05088_consen  447 PASYREDFSPEEAVRDIERLESLSGEGPLAVDLYRPAGAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIR  526 (1528)
T ss_pred             CHHHHhhCCchhHHHHHHHHHhhcCCCCceEEEeccCCCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceee
Confidence            45788889998    55556555   33456555433  346789999999999999999999999999999998875  


Q ss_pred             e-CC--EEEEEEEEEeCCCCCCCChhHHHHHHHHHCC
Q 012814           71 D-GG--WFMDVFHVIDQQGKKITDGKTIDYIEKALGP  104 (456)
Q Consensus        71 ~-~g--~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~  104 (456)
                      . +|  ..+.-|.+..+.+...+.....+.++++|..
T Consensus       527 ~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~~  563 (1528)
T PF05088_consen  527 RADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFEA  563 (1528)
T ss_pred             cCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHHH
Confidence            2 22  5566788887777654445566666666653

>PRK08818 prephenate dehydrogenase; Provisional

Probab=87.00  E-value=1.4  Score=45.42  Aligned_cols=49  Identities=14%  Similarity=0.184  Sum_probs=39.6

Q ss_pred             ceEEEEEEeC-CcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEe
Q 012814          127 DHTAIELIGR-DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (456)
Q Consensus       127 ~~t~i~v~~~-DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~  176 (456)
                      ..+.|.+.-+ |+||-|++|...|+.+|+||.+..+ .......-.|++.-
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~  343 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGF  343 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEE
Confidence            5777888886 9999999999999999999999999 43333443488876

>PRK14630 hypothetical protein; Provisional

Probab=86.55  E-value=8.8  Score=33.99  Aligned_cols=92  Identities=9%  Similarity=-0.005  Sum_probs=64.2

Q ss_pred             CchhHHHHHHHHHHhCCcEEEEEEEEecCC-ceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhcCCCceEEEEEeCC
Q 012814          277 DRAKLMFDIVCTLTDMQYVVFHAAISSDGP-HASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKD  355 (456)
Q Consensus       277 Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g-~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~r~~~~~~lev~~~D  355 (456)
                      |.-.+-..+..++..+|+.+.+......++ +.+ ..++...+|-   .-+.++.+-+.+...+....+..|.+||+++.
T Consensus         6 ~~~~i~~li~~~~~~~G~eLvdve~~~~~~~~~l-rV~Id~~~gV---~idDC~~vSr~i~~~ld~~i~~~Y~LEVSSPG   81 (143)
T PRK14630          6 DNSEVYNLIKNVTDRLGIEIIEINTFRNRNEGKI-QIVLYKKDSF---GVDTLCDLHKMILLILEAVLKYNFSLEISTPG   81 (143)
T ss_pred             cHHHHHHHHHHHHHHcCCEEEEEEEEecCCCcEE-EEEEECCCCC---CHHHHHHHHHHHHHHhcccCCCCeEEEEeCCC
Confidence            445567778889999999999999887654 555 4445444553   33678888888877776655788999999884


Q ss_pred             CcchHHHHHHHHHHCCc
Q 012814          356 RVGLLSEVTRILRENGL  372 (456)
Q Consensus       356 rpGlL~~It~~l~~~gi  372 (456)
                      =-.-|...-..-+-.|=
T Consensus        82 ldRpL~~~~df~r~~G~   98 (143)
T PRK14630         82 INRKIKSDREFKIFEGK   98 (143)
T ss_pred             CCCcCCCHHHHHHhCCC
Confidence            44445555555555553

>TIGR00657 asp_kinases aspartate kinase

Probab=86.41  E-value=23  Score=37.24  Aligned_cols=108  Identities=21%  Similarity=0.295  Sum_probs=65.6

Q ss_pred             CeEEEEEEecC-C-cchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCC
Q 012814           34 ECTVVKVDSVN-K-PGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAG  111 (456)
Q Consensus        34 ~~~~V~V~~~D-r-pGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~~  111 (456)
                      +...|+|.+.+ . +|.++++.+.|.++|++|.-....+. +..+ .|.|...+ .    +...+.|....... ..   
T Consensus       301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~s-e~sI-s~~I~~~~-~----~~a~~~L~~~~~~~-~~---  369 (441)
T TIGR00657       301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSS-ETSI-SFTVDKED-A----DQAKTLLKSELNLS-AL---  369 (441)
T ss_pred             CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCC-CceE-EEEEEHHH-H----HHHHHHHHHHHHhc-Cc---
Confidence            34566676544 3 79999999999999999976543332 2222 35554321 0    11222222211110 00   


Q ss_pred             cccCCcccccccCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEE
Q 012814          112 AKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAE  160 (456)
Q Consensus       112 ~~~~~~~~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~a~  160 (456)
                            ..  ..-..+...+++.|.   ++||++++|...|+++|+||....
T Consensus       370 ------~~--I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       370 ------SS--VEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             ------ce--EEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence                  00  122346778888654   789999999999999999997765

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK09181 aspartate kinase; Validated

Probab=86.22  E-value=31  Score=36.82  Aligned_cols=106  Identities=19%  Similarity=0.200  Sum_probs=67.3

Q ss_pred             CeEEEEEEec---CCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 012814           34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA  110 (456)
Q Consensus        34 ~~~~V~V~~~---DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~  110 (456)
                      +.+.|+|.+.   +.+|+.+++.+.|.++|++|.  -+.+. ... -.|.|...  .     ...+.+.+.|...+... 
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss-~~s-is~~v~~~--~-----~~~~~~~~~L~~~~~~~-  395 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATN-ANT-ITHYLWGS--L-----KTLKRVIAELEKRYPNA-  395 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEec-CcE-EEEEEcCC--h-----HHHHHHHHHHHHhcCCc-
Confidence            4556677544   689999999999999999997  23332 211 23555421  1     12233333343322110 


Q ss_pred             CcccCCcccccccCCCceEEEEEEeCC--cccHHHHHHHHHHhCCceEEEEEEe
Q 012814          111 GAKTWPSKQVGVHSVGDHTAIELIGRD--RPGLLSEISAVLANLRFNVAAAEVW  162 (456)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~t~i~v~~~D--rpGLL~~I~~~l~~~gi~I~~a~i~  162 (456)
                              .+  . ..+...|.+.|..  +||+.+++..+|.+.|+||......
T Consensus       396 --------~i--~-~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg  438 (475)
T PRK09181        396 --------EV--T-VRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQS  438 (475)
T ss_pred             --------eE--E-ECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEec
Confidence                    11  1 1457788888764  8999999999999999999765543

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=86.20  E-value=5.6  Score=40.96  Aligned_cols=66  Identities=20%  Similarity=0.232  Sum_probs=46.6

Q ss_pred             CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-----CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814          125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-----HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (456)
Q Consensus       125 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-----~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~  197 (456)
                      ......+.|.-+|+||.|++++..++++|.||.+..-..     ..+.+.-.+.+...       +++..+.|.+.|.
T Consensus       302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-------~~~~~~~i~~~L~  372 (380)
T TIGR01127       302 SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-------GKEHLDEILKILR  372 (380)
T ss_pred             CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-------CHHHHHHHHHHHH
Confidence            345668999999999999999999999999999885442     23445555555442       2345556666554

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=86.18  E-value=34  Score=36.22  Aligned_cols=120  Identities=14%  Similarity=0.180  Sum_probs=74.8

Q ss_pred             CCeEEEEEEecC---CcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCC
Q 012814           33 PECTVVKVDSVN---KPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHIT  109 (456)
Q Consensus        33 ~~~~~V~V~~~D---rpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~  109 (456)
                      .+.+.|+|..+.   ++|.++++.+.|..+|+||.--........  -.|.|...+.     +...+.|++....... +
T Consensus       305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~-----~~a~~~l~~~~~~~~~-~  376 (447)
T COG0527         305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDA-----PRALRALLEEKLELLA-E  376 (447)
T ss_pred             CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhH-----HHHHHHHHHHHhhhcc-e
Confidence            345566666443   459999999999999999974433322222  3466653211     2344555555543321 0


Q ss_pred             CCcccCCcccccccCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEe
Q 012814          110 AGAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (456)
Q Consensus       110 ~~~~~~~~~~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~  176 (456)
                                  .....+.-.|.+.|.   ..||..+++..+|++.++||....    .....-.|.|..
T Consensus       377 ------------v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is----sSe~~Is~vV~~  430 (447)
T COG0527         377 ------------VEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS----SSEISISFVVDE  430 (447)
T ss_pred             ------------EEeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE----cCCceEEEEEcc
Confidence                        112234556666654   678999999999999999999877    233445566654

>PRK12483 threonine dehydratase; Reviewed

Probab=86.12  E-value=27  Score=37.72  Aligned_cols=137  Identities=12%  Similarity=0.088  Sum_probs=86.2

Q ss_pred             CeEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHH-HHHHHHHHHH-Hh----
Q 012814          267 GYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEK-ERVIKCLEAA-IR----  340 (456)
Q Consensus       267 ~~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~-~~l~~~L~~~-l~----  340 (456)
                      -...+.|.-|||||-|.+++..|...  ||.+.+-......-..++......+     .+.. +.|.+.|++. +.    
T Consensus       344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~-----~~~~~~~i~~~l~~~g~~~~dl  416 (521)
T PRK12483        344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHP-----RHDPRAQLLASLRAQGFPVLDL  416 (521)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCC-----hhhhHHHHHHHHHHCCCCeEEC
Confidence            44568899999999999999999988  8877665543322233343333222     2344 7788888653 10    


Q ss_pred             ---------------hcC---CCceEEEEEeCCCcchHHHHHHHHHH-CCceEEEEEEeecCceeeeEEEEEeCCCCCCC
Q 012814          341 ---------------RRV---SEGLSLELCAKDRVGLLSEVTRILRE-NGLSVTRAGVSTVGEQAVNVFYVRDASGNPVD  401 (456)
Q Consensus       341 ---------------~r~---~~~~~lev~~~DrpGlL~~It~~l~~-~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~  401 (456)
                                     .|.   .+.-.+.+.=+.|||-|.++++.|.. .+|.-++=+  -.|.....+|.     |..+.
T Consensus       417 sdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~~niTeF~YR--~~~~~~a~v~v-----gi~~~  489 (521)
T PRK12483        417 TDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPRWNISLFHYR--NHGAADGRVLA-----GLQVP  489 (521)
T ss_pred             CCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCCcceeeeeec--CCCCCceEEEE-----EEeeC
Confidence                           112   23457888899999999999999986 355544433  34555555663     21222


Q ss_pred             hHHHHHHHHHHHHhhh
Q 012814          402 MKTIEALRKEIGHTML  417 (456)
Q Consensus       402 ~~~~~~L~~~l~~~~~  417 (456)
                      +++.+++.+.|.+...
T Consensus       490 ~~~~~~~~~~l~~~gy  505 (521)
T PRK12483        490 EDERAALDAALAALGY  505 (521)
T ss_pred             hhHHHHHHHHHHHCCC
Confidence            3455777777766544

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=86.06  E-value=9.1  Score=28.10  Aligned_cols=45  Identities=18%  Similarity=0.316  Sum_probs=32.4

Q ss_pred             EEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEe
Q 012814          130 AIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (456)
Q Consensus       130 ~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~  176 (456)
                      .|++.|.   +.||++++|.++|+++|+++.-....+.+  ..-.|.+..
T Consensus         3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~--~~is~~v~~   50 (66)
T cd04922           3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSE--RNISAVIDE   50 (66)
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeH
Confidence            5666664   78999999999999999999877654422  333344443

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=84.68  E-value=5.4  Score=41.08  Aligned_cols=68  Identities=13%  Similarity=0.188  Sum_probs=47.6

Q ss_pred             CceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeec----C-ceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhhh
Q 012814          345 EGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTV----G-EQAVNVFYVRDASGNPVDMKTIEALRKEIGHTML  417 (456)
Q Consensus       345 ~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~----g-~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~~  417 (456)
                      +...+.|.-+||||.|.+|++.++++|.||....-...    . +.+.=.+.+ +..+    ++..++|.+.|.+...
T Consensus       304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~v-et~~----~~~~~~i~~~L~~~G~  376 (380)
T TIGR01127       304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITL-ETRG----KEHLDEILKILRDMGY  376 (380)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEE-EeCC----HHHHHHHHHHHHHcCC
Confidence            44579999999999999999999999999988854421    1 222223333 2222    3566788888877654

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PLN02551 aspartokinase

Probab=84.62  E-value=37  Score=36.71  Aligned_cols=113  Identities=15%  Similarity=0.157  Sum_probs=67.4

Q ss_pred             CeEEEEEEec---CCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 012814           34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA  110 (456)
Q Consensus        34 ~~~~V~V~~~---DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~  110 (456)
                      +.+.|+|.+.   +.+|.++++...|.++|++|.--  .+ ....+ .|.+...+ .+ ..+...+.++..+.+ +..  
T Consensus       365 ~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ss-Se~sI-s~~v~~~~-~~-~~~~i~~~l~~l~~e-l~~--  435 (521)
T PLN02551        365 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--AT-SEVSI-SLTLDPSK-LW-SRELIQQELDHLVEE-LEK--  435 (521)
T ss_pred             CeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--ec-cCCEE-EEEEehhH-hh-hhhhHHHHHHHHHHH-hhc--
Confidence            4567788765   58999999999999999999855  22 22222 35554321 11 000011112111111 110  


Q ss_pred             CcccCCcccccccCCCceEEEEEEeC--CcccHHHHHHHHHHhCCceEEEEEEec
Q 012814          111 GAKTWPSKQVGVHSVGDHTAIELIGR--DRPGLLSEISAVLANLRFNVAAAEVWT  163 (456)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~t~i~v~~~--DrpGLL~~I~~~l~~~gi~I~~a~i~T  163 (456)
                       +     ..  ..-..+...|.|.|.  .+||+++++..+|++.|+||......+
T Consensus       436 -~-----~~--V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga  482 (521)
T PLN02551        436 -I-----AV--VNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA  482 (521)
T ss_pred             -C-----Ce--EEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC
Confidence             0     00  112245677777765  689999999999999999998766544

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=84.60  E-value=2.7  Score=40.39  Aligned_cols=67  Identities=15%  Similarity=0.233  Sum_probs=47.5

Q ss_pred             CCceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeC-CCCCCChHHHHHHHHHHHHh
Q 012814          344 SEGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDA-SGNPVDMKTIEALRKEIGHT  415 (456)
Q Consensus       344 ~~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~-~g~~l~~~~~~~L~~~l~~~  415 (456)
                      .+..++.+--.|-||+|.+|+-+|+..|.||++.-+.-..  +.+.|.++-. .|   ++..+++.+++|.+.
T Consensus        75 ~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~te--vk~LsrmTIVl~G---td~VveQa~rQiedl  142 (309)
T KOG2663|consen   75 VKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTE--VKALSRMTIVLQG---TDGVVEQARRQIEDL  142 (309)
T ss_pred             ccceeEEEEecCCchHHHHHHHHHHhccCCchheeeechh--hhhhhhceEEEec---cHHHHHHHHHHHHHh
Confidence            3567899999999999999999999999999998875433  3334422211 12   235667777777664

>PRK09224 threonine dehydratase; Reviewed

Probab=84.60  E-value=37  Score=36.54  Aligned_cols=138  Identities=12%  Similarity=0.061  Sum_probs=86.5

Q ss_pred             eEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHH-Hh------
Q 012814          268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAA-IR------  340 (456)
Q Consensus       268 ~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~-l~------  340 (456)
                      ...+.|.-|||||-|.+++..|.  +.||.+.+-...+.....+|......+.    +...+.|.+.|++. +.      
T Consensus       328 e~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~ls~  401 (504)
T PRK09224        328 EALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRG----QEERAEIIAQLRAHGYPVVDLSD  401 (504)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCCh----hhHHHHHHHHHHHcCCCeEECCC
Confidence            45788999999999999999999  6788776654433333334443332221    12377788888653 10      


Q ss_pred             -------------hcCC---CceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHH
Q 012814          341 -------------RRVS---EGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKT  404 (456)
Q Consensus       341 -------------~r~~---~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~  404 (456)
                                   .|.+   +.-.+.+.=+.|||-|-++...|. -+-||...+=.-.|...--++ +    |..+.+..
T Consensus       402 ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr~~~~~~g~vl-v----gi~~~~~~  475 (504)
T PRK09224        402 DELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYRNHGADYGRVL-A----GFQVPDAD  475 (504)
T ss_pred             CHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEccCCcccccEE-E----EEecChhh
Confidence                         1222   345788999999999999999776 778888888653443322232 2    22222234


Q ss_pred             HHHHHHHHHHhhh
Q 012814          405 IEALRKEIGHTML  417 (456)
Q Consensus       405 ~~~L~~~l~~~~~  417 (456)
                      .+++.+.|.+...
T Consensus       476 ~~~~~~~l~~~~~  488 (504)
T PRK09224        476 EPEFEAFLDELGY  488 (504)
T ss_pred             HHHHHHHHHHcCC
Confidence            5667777766443

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=84.50  E-value=2.6  Score=45.51  Aligned_cols=63  Identities=22%  Similarity=0.415  Sum_probs=43.4

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHH
Q 012814          346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRK  410 (456)
Q Consensus       346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~  410 (456)
                      .+.+=+.-.|+||.+..|+..|.++++||...++............+ .. ..+++++.+++|++
T Consensus       452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i-~~-D~~v~~~~l~~i~~  514 (526)
T PRK13581        452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVL-SV-DDPVPEEVLEELRA  514 (526)
T ss_pred             ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEE-EC-CCCCCHHHHHHHhc
Confidence            45555667999999999999999999999999987754222222222 23 33666566566653

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=83.91  E-value=87  Score=35.90  Aligned_cols=181  Identities=12%  Similarity=0.174  Sum_probs=97.6

Q ss_pred             CCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhc
Q 012814          125 VGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR  201 (456)
Q Consensus       125 ~~~~t~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~  201 (456)
                      ..+.+.|+|.+.   ++||+++++...|+++|++|......+..  ..-.|.+..          +...+....|++.+.
T Consensus       312 ~~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe--~sIsf~V~~----------~d~~~av~~L~~~f~  379 (819)
T PRK09436        312 LNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSE--YSISFCVPQ----------SDAAKAKRALEEEFA  379 (819)
T ss_pred             eCCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCC--ceEEEEEeH----------HHHHHHHHHHHHHHH
Confidence            346778888865   67999999999999999999777554322  223444443          122333333333222


Q ss_pred             CCCCcccccccceeecccccCchhHHHHhhhcCccccCCCCCcCccCCCCCCCCCEEEEEecCCCCeEEEEEEee---Cc
Q 012814          202 GCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCR---DR  278 (456)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~n~~~~~~~~v~V~~~---Dr  278 (456)
                      .+..                           .                 .  ....+.+.    .+...|.|.|.   ++
T Consensus       380 ~el~---------------------------~-----------------~--~~~~i~~~----~~valIsvvG~gm~~~  409 (819)
T PRK09436        380 LELK---------------------------E-----------------G--LLEPLEVE----ENLAIISVVGDGMRTH  409 (819)
T ss_pred             HHhc---------------------------c-----------------C--CcceEEEe----CCEEEEEEEccCcccC
Confidence            1100                           0                 0  00012221    24566788876   68


Q ss_pred             hhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCcc
Q 012814          279 AKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVG  358 (456)
Q Consensus       279 ~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~r~~~~~~lev~~~DrpG  358 (456)
                      +|+..++..+|.+.|+||.-....+..-..  .|.|..         ...++..+.|.+.+-. ..+...|-+.|....|
T Consensus       410 ~gv~arif~aL~~~~InI~~IsqgsSe~~I--s~vV~~---------~d~~~al~~LH~~f~~-~~~~~~i~l~G~G~VG  477 (819)
T PRK09436        410 PGIAAKFFSALGRANINIVAIAQGSSERSI--SVVIDN---------DDATKALRACHQSFFL-SDQVLDVFVIGVGGVG  477 (819)
T ss_pred             cCHHHHHHHHHHHCCCCEEEEEeccccceE--EEEEcH---------HHHHHHHHHHHHHHhc-ccccccEEEEecCHHH
Confidence            999999999999999999855433332222  244532         2344444555554411 1133445555554443


Q ss_pred             --hHHHHH---HHHHHCCceEEEEEE
Q 012814          359 --LLSEVT---RILRENGLSVTRAGV  379 (456)
Q Consensus       359 --lL~~It---~~l~~~gi~I~~a~i  379 (456)
                        ++.-+.   ..|.+.|+++.-..|
T Consensus       478 ~~~~~~l~~~~~~l~~~~~~l~v~~i  503 (819)
T PRK09436        478 GALLEQIKRQQPWLKKKNIDLRVCGI  503 (819)
T ss_pred             HHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence              222222   234444555554444

>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3

Probab=83.90  E-value=13  Score=27.31  Aligned_cols=34  Identities=21%  Similarity=0.383  Sum_probs=28.5

Q ss_pred             EEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEec
Q 012814          130 AIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWT  163 (456)
Q Consensus       130 ~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~a~i~T  163 (456)
                      .|.+.|.   ++||+++++..+|+++|+++.-....+
T Consensus         3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~   39 (66)
T cd04919           3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA   39 (66)
T ss_pred             EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence            5666665   789999999999999999998876655

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.

>PLN02550 threonine dehydratase

Probab=83.89  E-value=26  Score=38.34  Aligned_cols=134  Identities=16%  Similarity=0.135  Sum_probs=86.2

Q ss_pred             EEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecC-CceEEEEEEEccCCCCCCCHHHHHHHHHHHHHH-H-----h-
Q 012814          269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDG-PHASQEYYIRHMDGCILDTEGEKERVIKCLEAA-I-----R-  340 (456)
Q Consensus       269 ~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~-g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~-l-----~-  340 (456)
                      ..+.|.-+||||-|.+++..|...  ||.+.+-.... +.+ .+++....     ..++..+.|.+.|++. +     . 
T Consensus       418 ~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~-~v~v~ie~-----~~~~~~~~i~~~l~~~g~~~~~l~~  489 (591)
T PLN02550        418 AVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEA-LVLYSVGV-----HTEQELQALKKRMESAQLRTVNLTS  489 (591)
T ss_pred             EEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCce-EEEEEEEe-----CCHHHHHHHHHHHHHCCCCeEeCCC
Confidence            568899999999999999999986  88776654432 222 22332222     2346788888888764 1     0 


Q ss_pred             -------------hcC--CCceEEEEEeCCCcchHHHHHHHHHH-CCceEEEEEEeecCceeeeEEEEEeCCCCCCChHH
Q 012814          341 -------------RRV--SEGLSLELCAKDRVGLLSEVTRILRE-NGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKT  404 (456)
Q Consensus       341 -------------~r~--~~~~~lev~~~DrpGlL~~It~~l~~-~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~  404 (456)
                                   .|.  .+.-.+.+.=+.|||-|.++..+|.. .+|.-++=+  ..|+....+|.=     ..+.+++
T Consensus       490 ~~~~~~~LR~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~~~nITeF~YR--~~~~~~a~vlvG-----i~v~~~e  562 (591)
T PLN02550        490 NDLVKDHLRYLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSPRWNISLFHYR--GQGETGANVLVG-----IQVPPEE  562 (591)
T ss_pred             ChHHhhhhhheeccccccCceEEEEEEecCcCCHHHHHHHhhCCCCceeeEEee--cCCCCCccEEEE-----EeeCHHH
Confidence                         111  23457888899999999999998886 355544433  445555555532     2222356


Q ss_pred             HHHHHHHHHHhhh
Q 012814          405 IEALRKEIGHTML  417 (456)
Q Consensus       405 ~~~L~~~l~~~~~  417 (456)
                      .+++.+.|.+...
T Consensus       563 ~~~l~~~l~~~gy  575 (591)
T PLN02550        563 MQEFKSRANALGY  575 (591)
T ss_pred             HHHHHHHHHHcCC
Confidence            6778777776654

>PRK06349 homoserine dehydrogenase; Provisional

Probab=83.82  E-value=5.2  Score=41.99  Aligned_cols=52  Identities=19%  Similarity=0.295  Sum_probs=42.7

Q ss_pred             CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEe
Q 012814          125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (456)
Q Consensus       125 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~  176 (456)
                      ....+.|.+...|+||.|++|+..|.++|+||.+.......+....+++++.
T Consensus       345 ~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~  396 (426)
T PRK06349        345 IESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH  396 (426)
T ss_pred             hceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence            3456889999999999999999999999999998877654445566777776

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=83.62  E-value=7.5  Score=30.25  Aligned_cols=56  Identities=23%  Similarity=0.370  Sum_probs=37.8

Q ss_pred             CCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814          354 KDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGH  414 (456)
Q Consensus       354 ~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~  414 (456)
                      .+.||++++|..+|+++|++|...-  + ++ ..=.|-+.... ..+.++.+++|.++|.+
T Consensus        12 ~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~~~-~~~~~~~~~~l~~el~~   67 (75)
T cd04935          12 WQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDPDP-NGLDPDVLDALLDDLNQ   67 (75)
T ss_pred             CCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeCcc-cccchHHHHHHHHHHHh
Confidence            5789999999999999999999884  2 33 22245553332 11344456777777766

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=83.34  E-value=7.2  Score=40.41  Aligned_cols=51  Identities=20%  Similarity=0.251  Sum_probs=43.8

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEeC
Q 012814          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDD  177 (456)
Q Consensus       127 ~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~~  177 (456)
                      ..|.|-+..+|+||.|+++-..|+.+|+|+....... .+....=+||+.-.
T Consensus       296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~e  347 (386)
T PRK10622        296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQ  347 (386)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEe
Confidence            4677777778999999999999999999999998885 66668889999873

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=83.15  E-value=4.9  Score=36.25  Aligned_cols=66  Identities=18%  Similarity=0.383  Sum_probs=46.4

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHh
Q 012814          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (456)
Q Consensus       128 ~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L  200 (456)
                      .-++.+.-.|.||.|+++++.|+..|.||.+..+.- ......-+-.++.+       |+...+++...|.+..
T Consensus         4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g-------~~~~~EQi~kQL~kLi   70 (163)
T COG0440           4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG-------DEQVLEQIIKQLNKLI   70 (163)
T ss_pred             eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC-------CcchHHHHHHHHHhhc
Confidence            457788889999999999999999999999998764 33334434444442       1234566666665544

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=83.14  E-value=3  Score=45.08  Aligned_cols=52  Identities=21%  Similarity=0.381  Sum_probs=41.1

Q ss_pred             CCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec--CCceeEEEEEEE
Q 012814          124 SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVN  175 (456)
Q Consensus       124 ~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T--~~~~~~d~F~v~  175 (456)
                      -.+..+.+-+...|+||.+..|+..|.++++||...++..  .|+.+.-++.+.
T Consensus       448 ~~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D  501 (526)
T PRK13581        448 AKPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVD  501 (526)
T ss_pred             eeCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECC
Confidence            3445667777789999999999999999999999999987  445555555543

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=82.80  E-value=13  Score=28.97  Aligned_cols=61  Identities=23%  Similarity=0.272  Sum_probs=37.9

Q ss_pred             EEEEE---eCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHH-HHHHHHHH
Q 012814          348 SLELC---AKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIE-ALRKEIGH  414 (456)
Q Consensus       348 ~lev~---~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~-~L~~~l~~  414 (456)
                      .|.|.   ..++||++++|..+|+++|++|...-  + ++ ..=.|-+...  ....++.+. .|..+|..
T Consensus         3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~--~-s~-~~iSftv~~~--d~~~~~~~~~~l~~~l~~   67 (75)
T cd04932           3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLIT--T-SE-ISVALTLDNT--GSTSDQLLTQALLKELSQ   67 (75)
T ss_pred             EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEe--e-cC-CEEEEEEecc--ccchhHHHHHHHHHHHHh
Confidence            35552   46889999999999999999999874  2 22 2224555432  222122332 56666555

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK12483 threonine dehydratase; Reviewed

Probab=82.66  E-value=70  Score=34.60  Aligned_cols=132  Identities=17%  Similarity=0.151  Sum_probs=76.1

Q ss_pred             CCeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCChhHH-HHHHHHHCCC-CCCC
Q 012814           33 PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTI-DYIEKALGPK-GHIT  109 (456)
Q Consensus        33 ~~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~~~~-~~L~~~L~~~-l~~~  109 (456)
                      .....+.|.-|||||-|.+++.+|...  ||.+-.-.. ..+. ..++....-.+.     +.. +.|.++|... ....
T Consensus       343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~-~~v~v~ie~~~~-----~~~~~~i~~~l~~~g~~~~  414 (521)
T PRK12483        343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADARE-AHLFVGVQTHPR-----HDPRAQLLASLRAQGFPVL  414 (521)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCe-eEEEEEEEeCCh-----hhhHHHHHHHHHHCCCCeE
Confidence            355678999999999999999999988  887665543 2233 223433332221     243 7777777553 1110


Q ss_pred             C----Cc-ccCCccccccc--CCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEE
Q 012814          110 A----GA-KTWPSKQVGVH--SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLY  173 (456)
Q Consensus       110 ~----~~-~~~~~~~v~~~--~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~  173 (456)
                      .    .. +...+..+--.  ....--++.|.-+.|||-|.+++..|... .||...+=.-.+.....+|.
T Consensus       415 dlsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~-~niTeF~YR~~~~~~a~v~v  484 (521)
T PRK12483        415 DLTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPR-WNISLFHYRNHGAADGRVLA  484 (521)
T ss_pred             ECCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCC-cceeeeeecCCCCCceEEEE
Confidence            0    00 00000111111  12346678888999999999999999852 35544443333444444544

>PRK11898 prephenate dehydratase; Provisional

Probab=82.29  E-value=6.3  Score=39.05  Aligned_cols=66  Identities=21%  Similarity=0.231  Sum_probs=45.8

Q ss_pred             eEEEEEeCC-CcchHHHHHHHHHHCCceEEEEEEeecCceee-eEEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814          347 LSLELCAKD-RVGLLSEVTRILRENGLSVTRAGVSTVGEQAV-NVFYVRDASGNPVDMKTIEALRKEIGH  414 (456)
Q Consensus       347 ~~lev~~~D-rpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~-d~F~v~d~~g~~l~~~~~~~L~~~l~~  414 (456)
                      +.|-+.-.+ +||-|+++-..|+++|||+.+.+..-...+.+ =.||| |.+|.. ++..++++-+.|.+
T Consensus       197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~v-d~eg~~-~~~~~~~al~~L~~  264 (283)
T PRK11898        197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFI-DVEGHI-DDVLVAEALKELEA  264 (283)
T ss_pred             EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEE-EEEccC-CCHHHHHHHHHHHH
Confidence            445556544 69999999999999999999999876655544 47877 555754 33344444455544

>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2)

Probab=81.02  E-value=18  Score=26.41  Aligned_cols=45  Identities=16%  Similarity=0.301  Sum_probs=32.5

Q ss_pred             EEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEe
Q 012814          130 AIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (456)
Q Consensus       130 ~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~  176 (456)
                      .+.+.|.   +.||+++++...|+++|++|.-....+.+  ..-.|.+..
T Consensus         3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~~   50 (66)
T cd04924           3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVAE   50 (66)
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeH
Confidence            5666665   77999999999999999999887665432  222355544

Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=80.88  E-value=3.5  Score=44.57  Aligned_cols=63  Identities=16%  Similarity=0.366  Sum_probs=43.4

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHH
Q 012814          346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRK  410 (456)
Q Consensus       346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~  410 (456)
                      ++.+=+.-.|+||.+..|+.+|.+++|||...++........-...+ .. ..+++++.+++|++
T Consensus       451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i-~~-D~~v~~~~l~~i~~  513 (525)
T TIGR01327       451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLL-SL-DQPVPDEVLEEIKA  513 (525)
T ss_pred             ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEE-Ec-CCCCCHHHHHHHhc
Confidence            44555666899999999999999999999999887663322222222 23 33666566666654

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=80.65  E-value=5.5  Score=35.94  Aligned_cols=64  Identities=22%  Similarity=0.344  Sum_probs=45.0

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCce-eeeEEEEEeCCCCCCChHHHHHHHHHHHHh
Q 012814          347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQ-AVNVFYVRDASGNPVDMKTIEALRKEIGHT  415 (456)
Q Consensus       347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~-~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~  415 (456)
                      ..+.+.-.|.||.|.+++-.|++.|.||++..+.-.... ...+=.+..  |   ++..++++.++|.+.
T Consensus         5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~--g---~~~~~EQi~kQL~kL   69 (163)
T COG0440           5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS--G---DEQVLEQIIKQLNKL   69 (163)
T ss_pred             EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc--C---CcchHHHHHHHHHhh
Confidence            357777889999999999999999999999887644322 333333332  2   234567777777665

>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]

Probab=80.55  E-value=3.6  Score=41.90  Aligned_cols=75  Identities=23%  Similarity=0.386  Sum_probs=58.0

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHh-hhhccccCCCC
Q 012814          348 SLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHT-MLFNVKKVPAS  426 (456)
Q Consensus       348 ~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~-~~~~~~~~~~~  426 (456)
                      .|+|.+.||.||..++-..|...+|++...+|.     +...-|+-.+   .++.+..+.|+.++... .+..|+..++|
T Consensus         2 RleV~cedRlGltrelLdlLv~r~idl~~iEid-----~~~~IYln~p---~l~~~~fs~L~aei~~I~GV~~vr~V~~m   73 (511)
T COG3283           2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEID-----PIGRIYLNFP---ELEFESFSSLMAEIRRIPGVTDVRTVPWM   73 (511)
T ss_pred             ceEEEehhhhchHHHHHHHHHhcccCccceeec-----CCCeEEEecc---ccCHHHHHHHHHHHhcCCCccceeeecCC
Confidence            389999999999999999999999999999983     3334677444   23346678888888773 45577888888


Q ss_pred             CCCC
Q 012814          427 RSAY  430 (456)
Q Consensus       427 ~~~~  430 (456)
                      |+.+
T Consensus        74 PseR   77 (511)
T COG3283          74 PSER   77 (511)
T ss_pred             cchh
Confidence            8876

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=80.31  E-value=3  Score=45.10  Aligned_cols=52  Identities=13%  Similarity=0.331  Sum_probs=40.9

Q ss_pred             CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec--CCceeEEEEEEEe
Q 012814          125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVND  176 (456)
Q Consensus       125 ~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T--~~~~~~d~F~v~~  176 (456)
                      .+..+.+-+...|+||.+..|+..|.++++||...++..  .|+.+.-++.+..
T Consensus       448 ~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~  501 (525)
T TIGR01327       448 EPEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQ  501 (525)
T ss_pred             ecCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCC
Confidence            345666677789999999999999999999999999886  4556665555533

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK09084 aspartate kinase III; Validated

Probab=80.09  E-value=64  Score=34.14  Aligned_cols=101  Identities=16%  Similarity=0.191  Sum_probs=61.9

Q ss_pred             CeEEEEEEec---CCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 012814           34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA  110 (456)
Q Consensus        34 ~~~~V~V~~~---DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~  110 (456)
                      +...|+|.+.   +.+|.++++...|+++|++|.--.  + ....+ .|.|...+-.........+++.+.|... .   
T Consensus       305 ~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--s-se~sI-s~~i~~~~~~~~~~~~~~~~l~~el~~~-~---  376 (448)
T PRK09084        305 NQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--T-SEVSV-SLTLDTTGSTSTGDTLLTQALLTELSQL-C---  376 (448)
T ss_pred             CEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--c-cCcEE-EEEEechhhhhhhhHHHHHHHHHHHhcC-C---
Confidence            4557788654   689999999999999999998553  2 22222 3555432111000011223444444321 0   


Q ss_pred             CcccCCcccccccCCCceEEEEEEeC---CcccHHHHHHHHHHhC
Q 012814          111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANL  152 (456)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~  152 (456)
                              .  ..-..+...|.+.|.   ++||+.+++..+|.+.
T Consensus       377 --------~--i~~~~~va~IsvvG~gm~~~~gv~arif~aL~~~  411 (448)
T PRK09084        377 --------R--VEVEEGLALVALIGNNLSKACGVAKRVFGVLEPF  411 (448)
T ss_pred             --------e--EEEECCeEEEEEECCCcccCcChHHHHHHHHHhC
Confidence                    0  112346778888886   7899999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	456
1u8s_A	192	Glycine cleavage system transcriptional repressor,	4e-09
1u8s_A	192	Glycine cleavage system transcriptional repressor,	3e-04
2nyi_A	195	Unknown protein; protein structure initiative, PSI	8e-07
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Length = 192

 Score = 55.1 bits (132), Expect = 4e-09
 Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 8/132 (6%)

Query: 37  VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTID 96
           V+     ++PGI  EVV++++     I  + I+  G  F  +  +             I 
Sbjct: 8   VITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS-------GSPSNIT 60

Query: 97  YIEKALGPKGHITAGAKTW-PSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFN 155
            +E  L   G           +      +      + +   D+ GL  + +   A  +  
Sbjct: 61  RVETTLPLLGQQHDLITMMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIG 120

Query: 156 VAAAEVWTHNRR 167
           +A+    T ++ 
Sbjct: 121 MASLSAQTISKD 132

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Length = 192

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 19/157 (12%), Positives = 56/157 (35%), Gaps = 18/157 (11%)

Query: 270 VVNVKCRDR-------AKLMFDIVCTLTDMQYVV----FHAAISSDGPHASQEYYIRHMD 318
           V+     DR        +L+    C + D +  +    F   +   G  ++       + 
Sbjct: 8   VITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLP 67

Query: 319 GCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLLSEVTRILRENGLSVTRAG 378
              L  + +   ++K       +  +  + + + + D++GL  + T+   +  + +    
Sbjct: 68  L--LGQQHDLITMMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLS 125

Query: 379 VSTVGEQAV----NVFYVRDASGNPVDMKTIEALRKE 411
             T+ +  +    N F++  ++        +  L++E
Sbjct: 126 AQTISKDKLHSEQNQFHIAISARVDSGC-NLMQLQEE 161

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Length = 195

 Score = 48.6 bits (115), Expect = 8e-07
 Identities = 20/128 (15%), Positives = 41/128 (32%), Gaps = 5/128 (3%)

Query: 37  VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTID 96
           VV V   ++ GI+ +    L ++   +  + ++  GG F  +  V             ++
Sbjct: 7   VVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKLIQSALE 66

Query: 97  YIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNV 156
                        +                    + + G D  G++  ++AVLA    N+
Sbjct: 67  SALPGFQISTRRASSVAERHVSPDTREYE-----LYVEGPDSEGIVEAVTAVLAKKGANI 121

Query: 157 AAAEVWTH 164
              E  T 
Sbjct: 122 VELETETL 129

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 12/71 (16%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
             I ++G D+ G+ ++I+ V++    N+    +   +    C L +        V +  +
Sbjct: 6   AGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIF-------VKNTDK 58

Query: 189 LSLMEEQLKNI 199
           L+ + ++L+ +
Sbjct: 59  LTTLMDKLRKV 69

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 27/173 (15%), Positives = 54/173 (31%), Gaps = 44/173 (25%)

Query: 164 HNRRIACVL---YVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGF 220
             + I  V    +V D+  C+ V D  +  L +E++ +I+   D           F    
Sbjct: 17  QYKDILSVFEDAFV-DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG---TLRLFWT-L 71

Query: 221 THVDRRLHQMFFAD---RDYEGGGVTTADQV-DHTPSFKPEITVERLEDKGYSVV----- 271
                 + Q F  +    +Y    + +  +     PS    + +E+  D+ Y+       
Sbjct: 72  LSKQEEMVQKFVEEVLRINY--KFLMSPIKTEQRQPSMMTRMYIEQR-DRLYNDNQVFAK 128

Query: 272 -NVKCRDRAKLMFDI---VCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGC 320
            NV    R +    +   +  L   + V+        G           + G 
Sbjct: 129 YNVS---RLQPYLKLRQALLELRPAKNVLID------G-----------VLGS 161

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	456
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.77
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.77
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.71
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.68
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.91
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.89
2f06_A	144	Conserved hypothetical protein; structural genomic	98.56
2f06_A	144	Conserved hypothetical protein; structural genomic	98.48
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.22
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.05
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	97.92
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.91
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.8
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.75
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.68
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.65
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.61
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.54
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.53
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.51
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.48
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.47
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.4
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.38
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.37
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.27
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	97.16
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.11
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	96.89
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	96.86
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	96.85
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.72
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	96.59
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.57
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.55
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.41
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.27
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.22
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	95.96
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	95.83
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	95.7
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	95.5
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.36
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.12
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	94.89
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	94.84
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	94.73
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	94.22
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	94.08
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	93.94
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	92.7
3luy_A	329	Probable chorismate mutase; structural genomics, A	91.3
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	91.29
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	91.01
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	90.96
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	90.8
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	90.77
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	90.02
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	88.11
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	86.48
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	86.13
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	86.09
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	85.52
3luy_A	329	Probable chorismate mutase; structural genomics, A	85.46
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	83.59
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	83.21
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	82.72
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	80.87
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	80.51
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	80.39

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.77  E-value=7.3e-18  Score=156.29  Aligned_cols=156  Identities=15%  Similarity=0.106  Sum_probs=117.0

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCC---CC
Q 012814           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHI---TA  110 (456)
Q Consensus        34 ~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~---~~  110 (456)
                      ..++|+|+|+|||||++.++++|+++|+||+++++++..|.+.-.|.|..+..   .....++.|++.|......   ..
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~---~~~~~~~~l~~~L~~~~~~~~~~~   80 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAK---DGKLIQSALESALPGFQISTRRAS   80 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSS---SSHHHHHHHHHHSTTCEEEEEECC
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCc---cchhHHHHHHHHHHHHHHhcCCeE
Confidence            45799999999999999999999999999999999986666555788865421   2224678899998764311   00


Q ss_pred             CcccCCcccccccCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC--ceeEEEEEEEeCCCCCcCCChHH
Q 012814          111 GAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTR  188 (456)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~--~~~~d~F~v~~~~~g~~l~d~~~  188 (456)
                      ..+.  +.  . ......++|+|.|+|||||+++|+++|+++|+||.+++..|.+  .+..++|++.. ..+.+  ++..
T Consensus        81 ~~~~--~~--~-~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~-~~~~~--~~~~  152 (195)
T 2nyi_A           81 SVAE--RH--V-SPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGS-RVAFP--FPLY  152 (195)
T ss_dssp             CC--------C-CTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEE-EEEEE--GGGH
T ss_pred             EEEe--CC--c-CCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEE-EEEcC--CCcc
Confidence            1111  10  1 3345689999999999999999999999999999999999976  66778888877 33333  2345


Q ss_pred             HHHHHHHHHHHhc
Q 012814          189 LSLMEEQLKNILR  201 (456)
Q Consensus       189 ~~~l~~~L~~~L~  201 (456)
                       +.|+++|.....
T Consensus       153 -~~l~~~l~~~a~  164 (195)
T 2nyi_A          153 -QEVVTALSRVEE  164 (195)
T ss_dssp             -HHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHH
Confidence             788888876543

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.77  E-value=3.5e-18  Score=158.44  Aligned_cols=144  Identities=15%  Similarity=0.126  Sum_probs=113.4

Q ss_pred             CeEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh-----
Q 012814          267 GYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR-----  341 (456)
Q Consensus       267 ~~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~-----  341 (456)
                      ..++|+|+|+|||||+++|+++|+++|+||.++++++..|.+.-.|.|.... .  ......+.|++.|.+.+..     
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~-~--~~~~~~~~l~~~L~~~~~~~~~~~   80 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNA-K--DGKLIQSALESALPGFQISTRRAS   80 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS-S--SSHHHHHHHHHHSTTCEEEEEECC
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecC-c--cchhHHHHHHHHHHHHHHhcCCeE
Confidence            4578999999999999999999999999999999998766544377775432 1  2234567777777644321     


Q ss_pred             --------cCCCceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecC--ceeeeEEEEEeCCCCCCChHHHHHHHHH
Q 012814          342 --------RVSEGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVG--EQAVNVFYVRDASGNPVDMKTIEALRKE  411 (456)
Q Consensus       342 --------r~~~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g--~~~~d~F~v~d~~g~~l~~~~~~~L~~~  411 (456)
                              .....++|+|.|+|||||+++||++|+++|+||..++..|.+  +++.++||++...+.+ .+.. ++|+++
T Consensus        81 ~~~~~~~~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~-~~~~-~~l~~~  158 (195)
T 2nyi_A           81 SVAERHVSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP-FPLY-QEVVTA  158 (195)
T ss_dssp             CC----CCTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE-GGGH-HHHHHH
T ss_pred             EEEeCCcCCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC-CCcc-HHHHHH
Confidence                    012358999999999999999999999999999999999998  7789999998766544 2345 788888


Q ss_pred             HHHh
Q 012814          412 IGHT  415 (456)
Q Consensus       412 l~~~  415 (456)
                      |.+.
T Consensus       159 l~~~  162 (195)
T 2nyi_A          159 LSRV  162 (195)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.71  E-value=2.5e-16  Score=145.49  Aligned_cols=140  Identities=15%  Similarity=0.174  Sum_probs=109.5

Q ss_pred             eEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh------
Q 012814          268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR------  341 (456)
Q Consensus       268 ~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~------  341 (456)
                      .++|+|.|+||||++++++++|+++|+||.++++++..|.+.-.|.|..+       +...+.|++.|.+...+      
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~~~~~~~~~~~   78 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS-------PSNITRVETTLPLLGQQHDLITM   78 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC-------HHHHHHHHHHHHHHHHHHTCEEE
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC-------CCCHHHHHHHHHHHHHhcCCEEE
Confidence            46899999999999999999999999999999999987766657777532       24667788877765421      


Q ss_pred             --cC--------CCceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCc----eeeeEEEEEeCCCCCCChHHHHH
Q 012814          342 --RV--------SEGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGE----QAVNVFYVRDASGNPVDMKTIEA  407 (456)
Q Consensus       342 --r~--------~~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~----~~~d~F~v~d~~g~~l~~~~~~~  407 (456)
                        +.        ...++|+|.++||||++++|+++|+++|+||..++..|.++    ++.+.|+++...+.+ .+...++
T Consensus        79 ~~~~~~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~-~~~~~~~  157 (192)
T 1u8s_A           79 MKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD-SGCNLMQ  157 (192)
T ss_dssp             EEEECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC-TTSCHHH
T ss_pred             EEeCCCCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC-CCCCHHH
Confidence              11        13579999999999999999999999999999999999985    689999997765443 2234577


Q ss_pred             HHHHHHHh
Q 012814          408 LRKEIGHT  415 (456)
Q Consensus       408 L~~~l~~~  415 (456)
                      |+++|.+.
T Consensus       158 l~~~l~~~  165 (192)
T 1u8s_A          158 LQEEFDAL  165 (192)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88888754

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.68  E-value=2.6e-16  Score=145.38  Aligned_cols=156  Identities=15%  Similarity=0.187  Sum_probs=110.2

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCC---CCCC
Q 012814           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKG---HITA  110 (456)
Q Consensus        34 ~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l---~~~~  110 (456)
                      ...+|+|+|+||||++++++++|+++|+||.++++++..|.+...+.|..+.       ...+.|++.|....   ....
T Consensus         5 ~~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~-------~~~~~l~~~L~~~~~~~~~~~   77 (192)
T 1u8s_A            5 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP-------SNITRVETTLPLLGQQHDLIT   77 (192)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH-------HHHHHHHHHHHHHHHHHTCEE
T ss_pred             cEEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC-------CCHHHHHHHHHHHHHhcCCEE
Confidence            3578999999999999999999999999999999999777777688886431       24455555554311   1111


Q ss_pred             CcccCCcccccccCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCc----eeEEEEEEEeCCCCCcCCCh
Q 012814          111 GAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNR----RIACVLYVNDDTTCRAVGDQ  186 (456)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~----~~~d~F~v~~~~~g~~l~d~  186 (456)
                      ..+...+.  ........++|+|.|+||||++++|+++|+++|+||.+++..|.+.    +..++|+++. ..+.+  ++
T Consensus        78 ~~~~~~~~--~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~-~~~~~--~~  152 (192)
T 1u8s_A           78 MMKRTSPH--DHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAI-SARVD--SG  152 (192)
T ss_dssp             EEEEECCC--CCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEE-EEEEC--TT
T ss_pred             EEEeCCCC--CCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEE-EEeCC--CC
Confidence            01110000  0123446899999999999999999999999999999999999774    5778888876 23322  22


Q ss_pred             HHHHHHHHHHHHHhc
Q 012814          187 TRLSLMEEQLKNILR  201 (456)
Q Consensus       187 ~~~~~l~~~L~~~L~  201 (456)
                      ...+.|+++|.....
T Consensus       153 ~~~~~l~~~l~~~~~  167 (192)
T 1u8s_A          153 CNLMQLQEEFDALCT  167 (192)
T ss_dssp             SCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            346788888876543

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.91  E-value=2.3e-08  Score=102.44  Aligned_cols=122  Identities=8%  Similarity=-0.007  Sum_probs=89.4

Q ss_pred             CeEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHH---Hh---
Q 012814          267 GYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAA---IR---  340 (456)
Q Consensus       267 ~~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~---l~---  340 (456)
                      ..++|+|.|+||||+++.++++|+++|+||.+++....+|++.-...+..+.+.     ...+.|++.|...   +.   
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~-----~~~~~l~~~l~~~~~~~~~~~   85 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV-----ADGPALRHDVEAAIRKVGLDV   85 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHH-----HTSHHHHHHHHHHHHHTTCEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCc-----CCHHHHHHHHHHHHHHcCeEE
Confidence            456899999999999999999999999999999999888876544444321110     0125666666543   21   


Q ss_pred             --h------c--CCCceEEEEEeCC-CcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEE
Q 012814          341 --R------R--VSEGLSLELCAKD-RVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVR  393 (456)
Q Consensus       341 --~------r--~~~~~~lev~~~D-rpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~  393 (456)
                        +      |  ....+.+++.+.| +||++.+|+.+|+++|+||.....-+......=-|++.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~  149 (415)
T 3p96_A           86 SIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVS  149 (415)
T ss_dssp             EEEECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEE
T ss_pred             EEEECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEee
Confidence              0      1  1246899999999 99999999999999999999988777322222236664

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.89  E-value=3.1e-08  Score=101.54  Aligned_cols=153  Identities=13%  Similarity=0.095  Sum_probs=101.8

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCC---CCCCCC
Q 012814           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP---KGHITA  110 (456)
Q Consensus        34 ~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~---~l~~~~  110 (456)
                      ...+|+|.|+||||+++.++++|+++|+||.+++.++.+|++.....+.-+.+. .+    .+.|++.|..   .+....
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~-~~----~~~l~~~l~~~~~~~~~~~   85 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV-AD----GPALRHDVEAAIRKVGLDV   85 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHH-HT----SHHHHHHHHHHHHHTTCEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCc-CC----HHHHHHHHHHHHHHcCeEE
Confidence            467899999999999999999999999999999999988888766666533211 01    1344444432   122111


Q ss_pred             CcccCCcccccccCCCceEEEEEEeCC-cccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHH
Q 012814          111 GAKTWPSKQVGVHSVGDHTAIELIGRD-RPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRL  189 (456)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~t~i~v~~~D-rpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~  189 (456)
                      .+......  .......+..+++.+.| +||++.+|+.+++++|+||...+..+......--|.+..+    + .+   .
T Consensus        86 ~~~~~~~~--~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~----~-~~---~  155 (415)
T 3p96_A           86 SIERSDDV--PIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVP----P-GA---D  155 (415)
T ss_dssp             EEEECSSS--CSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECC----T-TC---H
T ss_pred             EEEECCcc--cccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCC----C-CC---H
Confidence            11110000  00133468899999999 9999999999999999999998887743333333666553    1 12   3


Q ss_pred             HHHHHHHHHHhc
Q 012814          190 SLMEEQLKNILR  201 (456)
Q Consensus       190 ~~l~~~L~~~L~  201 (456)
                      +.++.++.+.+.
T Consensus       156 ~~l~~~l~~l~~  167 (415)
T 3p96_A          156 EALRTALNRVSS  167 (415)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            556666665443

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.56  E-value=1.3e-06  Score=76.17  Aligned_cols=110  Identities=11%  Similarity=0.101  Sum_probs=74.4

Q ss_pred             EEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhcCCCceE
Q 012814          269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLS  348 (456)
Q Consensus       269 ~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~r~~~~~~  348 (456)
                      .+++|..+|+||.++++++.|++.|+||....+....+...-.|.+        .+.   ++.++.|++. .-......+
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~--------~d~---~~a~~~L~~~-G~~v~~~sv   74 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV--------SDP---DKAYKALKDN-HFAVNITDV   74 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE--------SCH---HHHHHHHHHT-TCCEEEEEE
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEe--------CCH---HHHHHHHHHc-CCeEeeeeE
Confidence            4688899999999999999999999999988776443322222432        122   3333444431 001111246


Q ss_pred             EEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEE
Q 012814          349 LELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVF  390 (456)
Q Consensus       349 lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F  390 (456)
                      +-+..+|+||.+++|+++|++.|+||.+......+.+..-.|
T Consensus        75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i  116 (144)
T 2f06_A           75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVI  116 (144)
T ss_dssp             EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEE
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEE
Confidence            777888999999999999999999998877653334444344

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.48  E-value=2.8e-06  Score=74.00  Aligned_cols=113  Identities=19%  Similarity=0.180  Sum_probs=75.7

Q ss_pred             eEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCccc
Q 012814           35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKT  114 (456)
Q Consensus        35 ~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~~~~~  114 (456)
                      ..+|+|..+|+||.++++++.|++.|+||..-.+....+..+-.|.+.+        .   +..++.|+.. .    +. 
T Consensus         6 ~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~d--------~---~~a~~~L~~~-G----~~-   68 (144)
T 2f06_A            6 AKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSD--------P---DKAYKALKDN-H----FA-   68 (144)
T ss_dssp             EEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESC--------H---HHHHHHHHHT-T----CC-
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeCC--------H---HHHHHHHHHc-C----Ce-
Confidence            3578999999999999999999999999998777632221222244321        1   2223333321 0    00 


Q ss_pred             CCcccccccCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEE
Q 012814          115 WPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYV  174 (456)
Q Consensus       115 ~~~~~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v  174 (456)
                         .       ....++.+..+|+||.+++++++|+++|+||.....+..+.+..-+|.+
T Consensus        69 ---v-------~~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~  118 (144)
T 2f06_A           69 ---V-------NITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP  118 (144)
T ss_dssp             ---E-------EEEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE
T ss_pred             ---E-------eeeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe
Confidence               0       1135677788999999999999999999999887765334445444444

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.22  E-value=6.2e-06  Score=65.73  Aligned_cols=66  Identities=15%  Similarity=0.348  Sum_probs=52.9

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHH
Q 012814          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI  199 (456)
Q Consensus       127 ~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~  199 (456)
                      ..+.|+|.++||||+|++|+++|+++|+||.+....+..+.+.-.+.+..+  + .    ..++.|.++|.+.
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~--~-~----~~l~~l~~~L~~~   69 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD--E-K----QDFTYLRNEFEAF   69 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--S-C----CCHHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC--C-C----CCHHHHHHHHHHH
Confidence            467899999999999999999999999999999998876777777777553  2 1    2357777777653

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.05  E-value=3e-05  Score=61.61  Aligned_cols=51  Identities=20%  Similarity=0.215  Sum_probs=44.6

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeC
Q 012814           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQ   84 (456)
Q Consensus        34 ~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~   84 (456)
                      ....|+|.|+||||++++++++|+++|+||.+....+.++.+.-.+.+.-+
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~   54 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD   54 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC
Confidence            357899999999999999999999999999999999877887777777533

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=97.92  E-value=0.0041  Score=66.53  Aligned_cols=270  Identities=12%  Similarity=0.156  Sum_probs=156.3

Q ss_pred             EEEEEE-ecCCcchHHHHHHHHhhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCcc
Q 012814           36 TVVKVD-SVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAK  113 (456)
Q Consensus        36 ~~V~V~-~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~~~~  113 (456)
                      +.|+|. .++.||.++++.+.|+++|++|.--..+. .+|..--.|.|...+ .    +...+.|+ .+...+...... 
T Consensus       271 ~~i~i~~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~-~----~~a~~~l~-~~~~el~~~~~~-  343 (600)
T 3l76_A          271 AKVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDL-L----NTAEAVTS-AIAPALRSYPEA-  343 (600)
T ss_dssp             EEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGG-H----HHHHHHHH-HHGGGGSSSTTC-
T ss_pred             EEEEEeCCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHH-H----HHHHHHHH-HHHHHhhccccc-
Confidence            344544 47899999999999999999995332222 455554457775321 0    11222222 232222100000 


Q ss_pred             cCCcccccccCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHH
Q 012814          114 TWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLS  190 (456)
Q Consensus       114 ~~~~~~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~  190 (456)
                       .....+  .-..+...|.|.|.   .+||+.+++..+|++.|+||....  |.  .....|.|...          ..+
T Consensus       344 -~~~~~v--~~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tS--e~~Is~vI~~~----------d~~  406 (600)
T 3l76_A          344 -DQEAEI--IVEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TS--EVKVSCVIDQR----------DAD  406 (600)
T ss_dssp             -SSSSEE--EEECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--EC--SSEEEEEEEGG----------GHH
T ss_pred             -cCccee--EecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cC--CCEEEEEEcHH----------HHH
Confidence             000111  22346888999986   789999999999999999997766  22  33444555542          234


Q ss_pred             HHHHHHHHHhcCCCCcccccccceeecccccCchhHHHHhhhcCccccCCCCCcCccCCCCCCCCCEEEEEecCCCCeEE
Q 012814          191 LMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSV  270 (456)
Q Consensus       191 ~l~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~n~~~~~~~~  270 (456)
                      +.-++|++.+.....    .            ..   .    .+...+            . ..-.-|..+    .+...
T Consensus       407 ~Av~aLh~~f~~~~t----~------------~~---~----~~~~~~------------~-~~v~Gia~~----~~~a~  446 (600)
T 3l76_A          407 RAIAALSNAFGVTLS----P------------PK---N----QTDTSH------------L-PAVRGVALD----QDQAQ  446 (600)
T ss_dssp             HHHHHHHHHTTCCBC----C------------CC---C----CCC---------------C-CSCCEEEEE----CSEEE
T ss_pred             HHHHHHHHhhcccCC----C------------cc---c----cccccc------------c-CceEEEEee----CCEEE
Confidence            444566666543210    0            00   0    000000            0 001133332    25566


Q ss_pred             EEEE-eeCchhHHHHHHHHHHhCCcEEEEEEEEec----CC--ceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh--
Q 012814          271 VNVK-CRDRAKLMFDIVCTLTDMQYVVFHAAISSD----GP--HASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR--  341 (456)
Q Consensus       271 v~V~-~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~----~g--~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~--  341 (456)
                      |++. .+|+||+.+++.+.|++.|+||---.....    +|  ..--.|.|..         ...++..+.|++....  
T Consensus       447 i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~---------~d~~~a~~~l~~~~~~~~  517 (600)
T 3l76_A          447 IAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE---------GDSSQAEAILQPLIKDWL  517 (600)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH---------HHHHHHHHHHHHHTTTST
T ss_pred             EEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeH---------HHHHHHHHHHHHHHHhcC
Confidence            7765 599999999999999999999953333322    24  2233466643         3344444445442110  


Q ss_pred             --c---CCCceEEEEEe---CCCcchHHHHHHHHHHCCceEEEEE
Q 012814          342 --R---VSEGLSLELCA---KDRVGLLSEVTRILRENGLSVTRAG  378 (456)
Q Consensus       342 --r---~~~~~~lev~~---~DrpGlL~~It~~l~~~gi~I~~a~  378 (456)
                        .   .+....|.|.|   ..+||+.+++.++|++.||||....
T Consensus       518 ~~~v~~~~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis  562 (600)
T 3l76_A          518 DAAIVVNKAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA  562 (600)
T ss_dssp             TCEEEEECCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE
T ss_pred             CceEEEeCCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE
Confidence              0   12456788887   4999999999999999999998866

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.91  E-value=5.1e-05  Score=59.62  Aligned_cols=63  Identities=17%  Similarity=0.401  Sum_probs=48.4

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHH
Q 012814          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQL  196 (456)
Q Consensus       127 ~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L  196 (456)
                      -.+.|.|.+.||||+|++|+++|++.|+||.+..+.+.++.+...|.+..+       +...++++.++|
T Consensus         4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~-------~~~~l~~l~~~L   66 (88)
T 2ko1_A            4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK-------NTDKLTTLMDKL   66 (88)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES-------SHHHHHHHHHHH
T ss_pred             EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC-------CHHHHHHHHHHH
Confidence            367889999999999999999999999999999998866555566666552       234455555444

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.80  E-value=8.8e-05  Score=58.25  Aligned_cols=64  Identities=6%  Similarity=0.148  Sum_probs=48.7

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814          346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGH  414 (456)
Q Consensus       346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~  414 (456)
                      .+.|.|.+.||||+|++|+++|+++|+||.++.+.+.++.+...|.+.-.     +...++++.++|.+
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~-----~~~~l~~l~~~L~~   68 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK-----NTDKLTTLMDKLRK   68 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES-----SHHHHHHHHHHHTT
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC-----CHHHHHHHHHHHhc
Confidence            35689999999999999999999999999999998876654555544322     23456667666654

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.75  E-value=0.00034  Score=62.34  Aligned_cols=102  Identities=15%  Similarity=0.244  Sum_probs=72.3

Q ss_pred             CeEEEEEEe-eCchhHHHHHHHHHHhCCcEEEEEEEEec-CCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHH---Hhh
Q 012814          267 GYSVVNVKC-RDRAKLMFDIVCTLTDMQYVVFHAAISSD-GPHASQEYYIRHMDGCILDTEGEKERVIKCLEAA---IRR  341 (456)
Q Consensus       267 ~~~~v~V~~-~Dr~gll~~i~~~L~~~~l~I~~a~i~t~-~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~---l~~  341 (456)
                      +...|+|.+ +|+||.++++...|+++|+||........ +|...-.|.|..         ...++..+.|++.   +..
T Consensus        24 ~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~---------~~~~~a~~~l~~~~~~l~~   94 (167)
T 2re1_A           24 NQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPR---------GDYKQTLEILSERQDSIGA   94 (167)
T ss_dssp             CCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECG---------GGHHHHHHHHHHSSTTTTC
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEec---------hHHHHHHHHHHHHHHHcCC
Confidence            567888885 99999999999999999999987765432 444444577732         1123333444432   111


Q ss_pred             c----CCCceEEEEEeCC---CcchHHHHHHHHHHCCceEEEE
Q 012814          342 R----VSEGLSLELCAKD---RVGLLSEVTRILRENGLSVTRA  377 (456)
Q Consensus       342 r----~~~~~~lev~~~D---rpGlL~~It~~l~~~gi~I~~a  377 (456)
                      .    ......+.|.|.+   +||+++++.++|.+.|+||...
T Consensus        95 ~~i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~i  137 (167)
T 2re1_A           95 ASIDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMI  137 (167)
T ss_dssp             SEEEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEE
T ss_pred             ceEEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEE
Confidence            0    1245789999987   9999999999999999999994

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.68  E-value=0.00054  Score=66.53  Aligned_cols=115  Identities=13%  Similarity=0.113  Sum_probs=70.1

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE--eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCC---CCCC
Q 012814           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP---KGHI  108 (456)
Q Consensus        34 ~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t--~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~---~l~~  108 (456)
                      ....|+|.|+||||+++.++++|+++|+||.+.+.++  ..|++.....+.-+.+. .+    .+.|+++|..   .+..
T Consensus         5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~-~~----~~~L~~~f~~la~~~~m   79 (288)
T 3obi_A            5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKV-IP----LASLRTGFGVIAAKFTM   79 (288)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCC-CC----HHHHHHHHHHHHHHTTC
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCC-CC----HHHHHHHHHHHHHHcCC
Confidence            3478999999999999999999999999999999986  46777766666533321 22    2445544432   1111


Q ss_pred             CCCcccCCcccccccCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec
Q 012814          109 TAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT  163 (456)
Q Consensus       109 ~~~~~~~~~~~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T  163 (456)
                                .+..........|-|.+.-+-.-|.+|......-.++++-+-+.+
T Consensus        80 ----------~~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Vis  124 (288)
T 3obi_A           80 ----------GWHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVS  124 (288)
T ss_dssp             ----------EEEEEETTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEE
T ss_pred             ----------EEEeeccCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEEEc
Confidence                      111111122334444444445566677666666555544343433

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.65  E-value=0.0014  Score=63.65  Aligned_cols=104  Identities=13%  Similarity=0.117  Sum_probs=68.5

Q ss_pred             eEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEec--CCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHH---Hh--
Q 012814          268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD--GPHASQEYYIRHMDGCILDTEGEKERVIKCLEAA---IR--  340 (456)
Q Consensus       268 ~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~--~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~---l~--  340 (456)
                      .++++|.|+||||++++++++|+++|+||.+++.++.  .|++.-...+.-+.+. .    ..+.|++.|++.   +.  
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~-~----~~~~L~~~f~~la~~~~m~   80 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKV-I----PLASLRTGFGVIAAKFTMG   80 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCC-C----CHHHHHHHHHHHHHHTTCE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCC-C----CHHHHHHHHHHHHHHcCCE
Confidence            4679999999999999999999999999999999854  5666544444333221 1    245566666533   21  


Q ss_pred             ---hcCCCceEEEEEeCCCcchHHHHHHHHHHCCceEEE
Q 012814          341 ---RRVSEGLSLELCAKDRVGLLSEVTRILRENGLSVTR  376 (456)
Q Consensus       341 ---~r~~~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~  376 (456)
                         +...+...|-|-.-.+---|.+|-.....-.++++-
T Consensus        81 ~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i  119 (288)
T 3obi_A           81 WHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIP  119 (288)
T ss_dssp             EEEEETTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEEE
T ss_pred             EEeeccCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeEE
Confidence               112233344444445555888888888776665443

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.61  E-value=0.0004  Score=67.83  Aligned_cols=50  Identities=24%  Similarity=0.358  Sum_probs=43.4

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEe--CCEEEEEEEEEe
Q 012814           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD--GGWFMDVFHVID   83 (456)
Q Consensus        34 ~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~--~g~~~d~f~V~~   83 (456)
                      ....++|.|+||||+++.+++.|+++|+||.+++.+++  .|+++....+..
T Consensus        21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~   72 (302)
T 3o1l_A           21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRA   72 (302)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEG
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEec
Confidence            45789999999999999999999999999999999985  688776665543

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.54  E-value=0.0014  Score=64.08  Aligned_cols=98  Identities=12%  Similarity=0.087  Sum_probs=63.2

Q ss_pred             EEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEec--CCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHH---Hh---
Q 012814          269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD--GPHASQEYYIRHMDGCILDTEGEKERVIKCLEAA---IR---  340 (456)
Q Consensus       269 ~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~--~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~---l~---  340 (456)
                      ++++|.|+||||++++|+++|+++|+||.+++.++.  .|++.-...+..+.+. .    ..+.|++.|++.   +.   
T Consensus        23 ~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~-~----~~~~L~~~l~~la~~l~m~~   97 (302)
T 3o1l_A           23 FRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLP-F----DLDGFREAFTPIAEEFSMDW   97 (302)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSS-S----CHHHHHHHHHHHHHHHTCEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCC-C----CHHHHHHHHHHHHHHhCCee
Confidence            568999999999999999999999999999999975  5666544444332221 1    245566655432   21   


Q ss_pred             --hcC--CCceEEEEEeCCCcchHHHHHHHHHHCCce
Q 012814          341 --RRV--SEGLSLELCAKDRVGLLSEVTRILRENGLS  373 (456)
Q Consensus       341 --~r~--~~~~~lev~~~DrpGlL~~It~~l~~~gi~  373 (456)
                        +..  +....|=+++.  ---|.+|......-.++
T Consensus        98 ~l~~~~~~~ri~vl~Sg~--g~nl~~ll~~~~~g~l~  132 (302)
T 3o1l_A           98 RITDSAQKKRVVLMASRE--SHCLADLLHRWHSDELD  132 (302)
T ss_dssp             EEEETTSCCEEEEEECSC--CHHHHHHHHHHHTTCSC
T ss_pred             eecccCCCcEEEEEEeCC--chhHHHHHHHHHCCCCC
Confidence              111  22334444444  34677777777665443

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.53  E-value=0.00096  Score=64.71  Aligned_cols=49  Identities=14%  Similarity=0.114  Sum_probs=42.2

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE--eCCEEEEEEEEE
Q 012814           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVI   82 (456)
Q Consensus        34 ~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t--~~g~~~d~f~V~   82 (456)
                      ....|+|.|+||||+++.+++.|+++|+||.+.+.++  ..|++.-...+.
T Consensus         7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~   57 (286)
T 3n0v_A            7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFR   57 (286)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEE
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEe
Confidence            3478999999999999999999999999999999997  457776555554

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.51  E-value=0.00058  Score=60.79  Aligned_cols=110  Identities=14%  Similarity=0.179  Sum_probs=75.0

Q ss_pred             CeEEEEEE-ecCCcchHHHHHHHHhhCCceEEEEEEEE-eCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCC
Q 012814           34 ECTVVKVD-SVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAG  111 (456)
Q Consensus        34 ~~~~V~V~-~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~~  111 (456)
                      +...|+|. .+|+||.++++.++|+++|+||.--.... .+|..--.|.|...+.     +...+.|++ +...+..   
T Consensus        24 ~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~~~-----~~a~~~l~~-~~~~l~~---   94 (167)
T 2re1_A           24 NQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDY-----KQTLEILSE-RQDSIGA---   94 (167)
T ss_dssp             CCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGGGH-----HHHHHHHHH-SSTTTTC---
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEechHH-----HHHHHHHHH-HHHHcCC---
Confidence            56888998 49999999999999999999998665542 3454444577753111     122333333 3222211   


Q ss_pred             cccCCcccccccCCCceEEEEEEeCC---cccHHHHHHHHHHhCCceEEEEE
Q 012814          112 AKTWPSKQVGVHSVGDHTAIELIGRD---RPGLLSEISAVLANLRFNVAAAE  160 (456)
Q Consensus       112 ~~~~~~~~v~~~~~~~~t~i~v~~~D---rpGLL~~I~~~l~~~gi~I~~a~  160 (456)
                            ..+  ....+...++|.|.+   +||+++++..+|+++|+||....
T Consensus        95 ------~~i--~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is  138 (167)
T 2re1_A           95 ------ASI--DGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS  138 (167)
T ss_dssp             ------SEE--EEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred             ------ceE--EecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence                  011  123468899999987   99999999999999999999854

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.48  E-value=0.00093  Score=64.84  Aligned_cols=49  Identities=24%  Similarity=0.217  Sum_probs=42.3

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE--eCCEEEEEEEEE
Q 012814           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVI   82 (456)
Q Consensus        34 ~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t--~~g~~~d~f~V~   82 (456)
                      ....|+|.|+||||+++.+++.|+++|+||.+++.++  ..|+++....+.
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~   56 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVE   56 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEE
Confidence            4578999999999999999999999999999999986  467777555554

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.47  E-value=0.0021  Score=62.23  Aligned_cols=101  Identities=10%  Similarity=-0.004  Sum_probs=64.2

Q ss_pred             eEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEec--CCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh----
Q 012814          268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD--GPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR----  341 (456)
Q Consensus       268 ~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~--~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~----  341 (456)
                      .++++|.|+||||++++++++|+++|+||.+++.++.  .|++.-...+..+.+      ...+.|++.|.+.-.+    
T Consensus         8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~------~~~~~L~~~f~~la~~l~m~   81 (286)
T 3n0v_A            8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDD------FDEAGFRAGLAERSEAFGMA   81 (286)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCSS------CCHHHHHHHHHHHHGGGTCE
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCCC------CCHHHHHHHHHHHHHHcCCE
Confidence            4679999999999999999999999999999999964  566553444432221      1256666666543211    


Q ss_pred             ----cCCCceEEEEEeCCCcchHHHHHHHHHHCCceE
Q 012814          342 ----RVSEGLSLELCAKDRVGLLSEVTRILRENGLSV  374 (456)
Q Consensus       342 ----r~~~~~~lev~~~DrpGlL~~It~~l~~~gi~I  374 (456)
                          ...+...|-|-+-.+---|.+|-.....-.++.
T Consensus        82 ~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~  118 (286)
T 3n0v_A           82 FELTAPNHRPKVVIMVSKADHCLNDLLYRQRIGQLGM  118 (286)
T ss_dssp             EEEECTTCCCEEEEEESSCCHHHHHHHHHHHTTSSCC
T ss_pred             EEeecCCCCcEEEEEEeCCCCCHHHHHHHHHCCCCCc
Confidence                112222333333333457777777776654443

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.40  E-value=0.0034  Score=60.86  Aligned_cols=102  Identities=9%  Similarity=0.074  Sum_probs=64.6

Q ss_pred             CeEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEec--CCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh---
Q 012814          267 GYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD--GPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR---  341 (456)
Q Consensus       267 ~~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~--~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~---  341 (456)
                      ..++++|.|+||||++++|+++|+++|+||.+++.++.  .|++.-...+.. .+.      ..+.|++.|++.-.+   
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~-~~~------~~~~L~~~f~~la~~~~m   78 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEI-PVA------GVNDFNSAFGKVVEKYNA   78 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC-CC---------CHHHHHHHHHHGGGTC
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEc-CCC------CHHHHHHHHHHHHHHcCC
Confidence            45689999999999999999999999999999999854  566653333322 111      123566666543211   


Q ss_pred             -----cCCCceEEEEEeCCCcchHHHHHHHHHHCCceEE
Q 012814          342 -----RVSEGLSLELCAKDRVGLLSEVTRILRENGLSVT  375 (456)
Q Consensus       342 -----r~~~~~~lev~~~DrpGlL~~It~~l~~~gi~I~  375 (456)
                           ...+...|-|-+-.+---|.+|-.....-.++++
T Consensus        79 ~~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~  117 (287)
T 3nrb_A           79 EWWFRPRTDRKKVVIMVSKFDHCLGDLLYRHRLGELDME  117 (287)
T ss_dssp             EEEEEETTCCCEEEEEECSCCHHHHHHHHHHHHTSSCCE
T ss_pred             eeEeeccCCCcEEEEEEeCCCcCHHHHHHHHHCCCCCeE
Confidence                 1122333434344444578888888877655443

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.38  E-value=0.0033  Score=61.09  Aligned_cols=101  Identities=14%  Similarity=0.138  Sum_probs=63.5

Q ss_pred             eEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEec--CCceEEEEEEEcc-CCCCCCCHHHHHHHHHHHHHH---Hh-
Q 012814          268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD--GPHASQEYYIRHM-DGCILDTEGEKERVIKCLEAA---IR-  340 (456)
Q Consensus       268 ~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~--~g~~~d~f~V~~~-~g~~~~~~~~~~~l~~~L~~~---l~-  340 (456)
                      .++++|.|+||||++++|+++|+++|+||.+++.++.  .|++.-...+... .+...    ..+.|++.|++.   +. 
T Consensus        10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~----~~~~L~~~f~~la~~~~m   85 (292)
T 3lou_A           10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADAL----RVDALRREFEPIAERFRM   85 (292)
T ss_dssp             EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----C----CHHHHHHHHHHHHHHHTC
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCC----CHHHHHHHHHHHHHhcCc
Confidence            4679999999999999999999999999999999963  5665533333222 01011    245566666432   21 


Q ss_pred             ----hcC--CCceEEEEEeCCCcchHHHHHHHHHHCCceE
Q 012814          341 ----RRV--SEGLSLELCAKDRVGLLSEVTRILRENGLSV  374 (456)
Q Consensus       341 ----~r~--~~~~~lev~~~DrpGlL~~It~~l~~~gi~I  374 (456)
                          +..  +....|=+++.+  --|.+|-.....-.+++
T Consensus        86 ~~~l~~~~~~~ri~vl~Sg~g--~~l~~ll~~~~~g~l~~  123 (292)
T 3lou_A           86 QWAIHDVAARPKVLIMVSKLE--HCLADLLFRWKMGELKM  123 (292)
T ss_dssp             EEEEEETTSCCEEEEEECSCC--HHHHHHHHHHHHTSSCC
T ss_pred             EEEeeccCCCCEEEEEEcCCC--cCHHHHHHHHHcCCCCc
Confidence                111  223444444443  47788887777655543

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.37  E-value=0.0031  Score=56.71  Aligned_cols=103  Identities=12%  Similarity=0.121  Sum_probs=71.4

Q ss_pred             CeEEEEEE-eeCchhHHHHHHHHHHhCCcEEEEEEEEec---CCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh-
Q 012814          267 GYSVVNVK-CRDRAKLMFDIVCTLTDMQYVVFHAAISSD---GPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR-  341 (456)
Q Consensus       267 ~~~~v~V~-~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~---~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~-  341 (456)
                      +.+.|+|. .+|+||.++++...|++.|+||......+.   ++..--.|.+..         ...++..+.|++.... 
T Consensus        14 ~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~---------~d~~~a~~~l~~~~~~~   84 (178)
T 2dtj_A           14 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPR---------SDGRRAMEILKKLQVQG   84 (178)
T ss_dssp             SEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEH---------HHHHHHHHHHHTTTTTT
T ss_pred             CEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcc---------ccHHHHHHHHHHHHHhc
Confidence            56778884 699999999999999999999987665543   222222366642         2223334444432111 


Q ss_pred             --c----CCCceEEEEEeC---CCcchHHHHHHHHHHCCceEEEEE
Q 012814          342 --R----VSEGLSLELCAK---DRVGLLSEVTRILRENGLSVTRAG  378 (456)
Q Consensus       342 --r----~~~~~~lev~~~---DrpGlL~~It~~l~~~gi~I~~a~  378 (456)
                        .    ..+...|.|.|.   ++||+++++.++|++.||||....
T Consensus        85 ~~~~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is  130 (178)
T 2dtj_A           85 NWTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS  130 (178)
T ss_dssp             TCSEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             CCCeEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE
Confidence              1    124567788887   899999999999999999999843

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.27  E-value=0.0032  Score=61.20  Aligned_cols=49  Identities=12%  Similarity=0.079  Sum_probs=42.1

Q ss_pred             CeEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEE--eCCEEEEEEEEE
Q 012814           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVI   82 (456)
Q Consensus        34 ~~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t--~~g~~~d~f~V~   82 (456)
                      ....++|.|+||||+++++++.|+++|+||.+++.++  ..|+++-...+.
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~   59 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFH   59 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEE
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEE
Confidence            4578999999999999999999999999999999997  467776555554

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=97.16  E-value=0.0023  Score=56.87  Aligned_cols=106  Identities=7%  Similarity=0.041  Sum_probs=70.8

Q ss_pred             CCeEEEEEEe-eCchhHHHHHHHHHHhCCcEEEEEEEEec---CCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh
Q 012814          266 KGYSVVNVKC-RDRAKLMFDIVCTLTDMQYVVFHAAISSD---GPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR  341 (456)
Q Consensus       266 ~~~~~v~V~~-~Dr~gll~~i~~~L~~~~l~I~~a~i~t~---~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~  341 (456)
                      ++.+.|+|.+ +|+||.++++..+|++.|+||.-......   .|...-.|.|...+.      +...++...+...+.-
T Consensus        14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~------~~a~~~L~~~~~~~~~   87 (167)
T 2dt9_A           14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFA------QEALEALEPVLAEIGG   87 (167)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGH------HHHHHHHHHHHHHHCC
T ss_pred             CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHH------HHHHHHHHHHHHHhCC
Confidence            3667788876 89999999999999999999987554322   233334577743111      1111221222222321


Q ss_pred             c---CCCceEEEEEeCC---CcchHHHHHHHHHHCCceEEEE
Q 012814          342 R---VSEGLSLELCAKD---RVGLLSEVTRILRENGLSVTRA  377 (456)
Q Consensus       342 r---~~~~~~lev~~~D---rpGlL~~It~~l~~~gi~I~~a  377 (456)
                      .   ......+.|.|.+   +||+++++.++|++.||||...
T Consensus        88 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i  129 (167)
T 2dt9_A           88 EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMI  129 (167)
T ss_dssp             EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEE
T ss_pred             cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEE
Confidence            1   1244668899987   9999999999999999999655

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.11  E-value=0.0034  Score=56.39  Aligned_cols=111  Identities=18%  Similarity=0.201  Sum_probs=73.5

Q ss_pred             CCeEEEEE-EecCCcchHHHHHHHHhhCCceEEEEEEEEe---CCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCC
Q 012814           33 PECTVVKV-DSVNKPGILLEVVQVLSDLDLIITKAYISSD---GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHI  108 (456)
Q Consensus        33 ~~~~~V~V-~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~---~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~  108 (456)
                      .+.+.|+| ..+|+||.++++.+.|++.|+||.--...+.   ++..--.|.+...         ..+...+.|+... .
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~---------d~~~a~~~l~~~~-~   82 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRS---------DGRRAMEILKKLQ-V   82 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHH---------HHHHHHHHHHTTT-T
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccc---------cHHHHHHHHHHHH-H
Confidence            35778888 4799999999999999999999986555442   3333223666531         1122233443311 0


Q ss_pred             CCCcccCCcccccccCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEE
Q 012814          109 TAGAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAE  160 (456)
Q Consensus       109 ~~~~~~~~~~~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~a~  160 (456)
                      ....     ..+  ....+...|+|.|.   ++||+++++..+|++.|+||....
T Consensus        83 ~~~~-----~~v--~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is  130 (178)
T 2dtj_A           83 QGNW-----TNV--LYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS  130 (178)
T ss_dssp             TTTC-----SEE--EEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             hcCC-----CeE--EEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE
Confidence            0000     011  12346788888887   899999999999999999998854

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=96.89  E-value=0.003  Score=56.07  Aligned_cols=63  Identities=16%  Similarity=0.279  Sum_probs=50.3

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CC-ceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (456)
Q Consensus       128 ~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~-~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~  198 (456)
                      ...|+|.+.|+||+|++|+++|+++|+||.+..+.+ .+ +...-+|.+..        +...++.+...|.+
T Consensus         3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~--------d~~~leqI~kqL~K   67 (164)
T 2f1f_A            3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG--------DEKVLEQIEKQLHK   67 (164)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES--------CHHHHHHHHHHHHH
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEec--------cHHHHHHHHHHHcC
Confidence            467899999999999999999999999999999875 43 55666666653        24667888877765

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=96.86  E-value=0.063  Score=57.30  Aligned_cols=184  Identities=19%  Similarity=0.222  Sum_probs=113.7

Q ss_pred             ceEEEEEEe-CCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhcCCC
Q 012814          127 DHTAIELIG-RDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCD  204 (456)
Q Consensus       127 ~~t~i~v~~-~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~~~~  204 (456)
                      +.+.|++.. .|.||++++|...|+++|++|.-..... .++...-.|.+...          ...+.+..|.+ +..++
T Consensus       269 ~~~~i~i~~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~----------~~~~a~~~l~~-~~~el  337 (600)
T 3l76_A          269 DQAKVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKD----------LLNTAEAVTSA-IAPAL  337 (600)
T ss_dssp             CCEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGG----------GHHHHHHHHHH-HGGGG
T ss_pred             CEEEEEEeCCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHH----------HHHHHHHHHHH-HHHHh
Confidence            344555553 6899999999999999999997765544 44555556666552          12222222222 21111


Q ss_pred             CcccccccceeecccccCchhHHHHhhhcCccccCCCCCcCccCCCCCCCCCEEEEEecCCCCeEEEEEEee---CchhH
Q 012814          205 DEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCR---DRAKL  281 (456)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~n~~~~~~~~v~V~~~---Dr~gl  281 (456)
                      .    .                 +    .                 .......|.++    .+...|.|.|.   ++||+
T Consensus       338 ~----~-----------------~----~-----------------~~~~~~~v~~~----~~~a~VsvVG~gm~~~~Gv  371 (600)
T 3l76_A          338 R----S-----------------Y----P-----------------EADQEAEIIVE----KGIAKIAIAGAGMIGRPGI  371 (600)
T ss_dssp             S----S-----------------S----T-----------------TCSSSSEEEEE----CSEEEEEEECGGGTTCTTH
T ss_pred             h----c-----------------c----c-----------------cccCcceeEec----CCeEEEEEECCCcccCccH
Confidence            0    0                 0    0                 00001123332    25678899976   68999


Q ss_pred             HHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhc-CC----------------
Q 012814          282 MFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRR-VS----------------  344 (456)
Q Consensus       282 l~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~r-~~----------------  344 (456)
                      .+++..+|++.|+||.-..   ....-+ .|.|..         +..++..++|.+.+... .+                
T Consensus       372 ~a~if~aL~~~~Ini~~is---tSe~~I-s~vI~~---------~d~~~Av~aLh~~f~~~~t~~~~~~~~~~~~~v~Gi  438 (600)
T 3l76_A          372 AAKMFKTLADVGVNIEMIS---TSEVKV-SCVIDQ---------RDADRAIAALSNAFGVTLSPPKNQTDTSHLPAVRGV  438 (600)
T ss_dssp             HHHHHHHHHHTTCCCCEEE---ECSSEE-EEEEEG---------GGHHHHHHHHHHHTTCCBCCCCCCCC---CCSCCEE
T ss_pred             HHHHHHHHHhCCCcEEEEe---cCCCEE-EEEEcH---------HHHHHHHHHHHHhhcccCCCccccccccccCceEEE
Confidence            9999999999999997554   333333 355532         33455556676665321 10                


Q ss_pred             ----CceEEEEE-eCCCcchHHHHHHHHHHCCceEEEEEEe
Q 012814          345 ----EGLSLELC-AKDRVGLLSEVTRILRENGLSVTRAGVS  380 (456)
Q Consensus       345 ----~~~~lev~-~~DrpGlL~~It~~l~~~gi~I~~a~i~  380 (456)
                          +-..|.|. .+|+||+.++|-..|++.||+|....-+
T Consensus       439 a~~~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~  479 (600)
T 3l76_A          439 ALDQDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQS  479 (600)
T ss_dssp             EEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEE
T ss_pred             EeeCCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec
Confidence                12345553 4799999999999999999999766544

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=96.85  E-value=0.0029  Score=56.18  Aligned_cols=63  Identities=17%  Similarity=0.295  Sum_probs=49.7

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCc--eeeeEEEEEeCCCCCCChHHHHHHHHHHHHh
Q 012814          347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGE--QAVNVFYVRDASGNPVDMKTIEALRKEIGHT  415 (456)
Q Consensus       347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~--~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~  415 (456)
                      +.|.|.+.||||+|++|+.+|+++|+||.++.+.+..+  ...=+|.+.   +.   +..+++|.++|.+.
T Consensus         4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~---~d---~~~leqI~kqL~Kl   68 (164)
T 2f1f_A            4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV---GD---EKVLEQIEKQLHKL   68 (164)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE---SC---HHHHHHHHHHHHHS
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe---cc---HHHHHHHHHHHcCC
Confidence            56899999999999999999999999999999875543  334345553   21   46788999998875

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.72  E-value=0.0047  Score=54.79  Aligned_cols=64  Identities=17%  Similarity=0.282  Sum_probs=50.9

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-C-CceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHH
Q 012814          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-H-NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI  199 (456)
Q Consensus       128 ~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~-~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~  199 (456)
                      ...|+|...|+||.|++|+++|+++|+||.+..+.+ . .+...-+|.+..+        ...++.+...|.+.
T Consensus         4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d--------~~~leql~kQL~Kl   69 (165)
T 2pc6_A            4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP--------DEIVEQITKQLNKL   69 (165)
T ss_dssp             EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC--------HHHHHHHHHHHHHS
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEecc--------HHHHHHHHHHhcCC
Confidence            467899999999999999999999999999999875 4 3556666677652        45677787777653

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=96.59  E-value=0.0042  Score=55.15  Aligned_cols=106  Identities=14%  Similarity=0.218  Sum_probs=72.6

Q ss_pred             CCeEEEEEEe-cCCcchHHHHHHHHhhCCceEEEEEEEEe---CCEEEEEEEEEeCCCCCCCChhHHHHHHH---HHCCC
Q 012814           33 PECTVVKVDS-VNKPGILLEVVQVLSDLDLIITKAYISSD---GGWFMDVFHVIDQQGKKITDGKTIDYIEK---ALGPK  105 (456)
Q Consensus        33 ~~~~~V~V~~-~DrpGLl~~i~~vL~~~glnI~~A~i~t~---~g~~~d~f~V~~~~g~~~~~~~~~~~L~~---~L~~~  105 (456)
                      .+...|+|.+ +|+||.++++.++|++.|+||.--.....   .|..--.|.|...+.     +...+.|++   .+.- 
T Consensus        14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~-----~~a~~~L~~~~~~~~~-   87 (167)
T 2dt9_A           14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFA-----QEALEALEPVLAEIGG-   87 (167)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGH-----HHHHHHHHHHHHHHCC-
T ss_pred             CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHH-----HHHHHHHHHHHHHhCC-
Confidence            4577888876 89999999999999999999986444322   344444577753211     122233332   2320 


Q ss_pred             CCCCCCcccCCcccccccCCCceEEEEEEeCC---cccHHHHHHHHHHhCCceEEEE
Q 012814          106 GHITAGAKTWPSKQVGVHSVGDHTAIELIGRD---RPGLLSEISAVLANLRFNVAAA  159 (456)
Q Consensus       106 l~~~~~~~~~~~~~v~~~~~~~~t~i~v~~~D---rpGLL~~I~~~l~~~gi~I~~a  159 (456)
                                   .  .....+...+.|.|.+   +||+++++..+|++.|+||...
T Consensus        88 -------------~--v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i  129 (167)
T 2dt9_A           88 -------------E--AILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMI  129 (167)
T ss_dssp             -------------E--EEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEE
T ss_pred             -------------c--EEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEE
Confidence                         0  1123467889999987   9999999999999999999544

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.57  E-value=0.0084  Score=53.01  Aligned_cols=59  Identities=25%  Similarity=0.496  Sum_probs=44.0

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814          348 SLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGH  414 (456)
Q Consensus       348 ~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~  414 (456)
                      .|+|.+.||+|+|++|+++|+++++||..+.+.+.|.     +|+.-+   .........|..++..
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g~-----i~~~~~---~~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGR-----IYLNFA---ELEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTTE-----EEEEEC---CCCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCCE-----EEEEEE---eCCHHHHHHHHHHHHc
Confidence            4899999999999999999999999999999977632     555433   1223445555555554

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.55  E-value=0.0073  Score=53.55  Aligned_cols=63  Identities=16%  Similarity=0.289  Sum_probs=49.5

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecC--ceeeeEEEEEeCCCCCCChHHHHHHHHHHHHh
Q 012814          347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVG--EQAVNVFYVRDASGNPVDMKTIEALRKEIGHT  415 (456)
Q Consensus       347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g--~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~  415 (456)
                      +.|.|...||||+|++|+.+|+++|+||.++.+.+..  +...=+|.+.   +.   +..+++|.++|.+.
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~---~d---~~~leql~kQL~Kl   69 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN---GP---DEIVEQITKQLNKL   69 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE---EC---HHHHHHHHHHHHHS
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe---cc---HHHHHHHHHHhcCC
Confidence            5689999999999999999999999999999987544  3344355553   21   46788999998875

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.41  E-value=0.25  Score=44.65  Aligned_cols=123  Identities=18%  Similarity=0.179  Sum_probs=82.8

Q ss_pred             eEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEE-EeC-CEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCCc
Q 012814           35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS-SDG-GWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGA  112 (456)
Q Consensus        35 ~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~-t~~-g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~~~  112 (456)
                      ...|+|+..|+||.|++++++|+..|+||.+-.+. |.+ |..--++.|...       +...++|.+.|....+.-...
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~-------e~~ieqL~kQL~KLidVikV~  101 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD-------DKTIEQIEKQAYKLVEVVKVT  101 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC-------TTHHHHHHHHHTTSTTEEEEE
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC-------HHHHHHHHHHhcCcCceEEEE
Confidence            56899999999999999999999999999998886 544 666656677532       247788888888753321000


Q ss_pred             ccCC--cccccccCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeC
Q 012814          113 KTWP--SKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDD  177 (456)
Q Consensus       113 ~~~~--~~~v~~~~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~  177 (456)
                      ....  ...    -...-..+.|.+...   -.+|.+....++.+|.+..-      -.-++.+++.
T Consensus       102 dl~~~~~~~----v~REl~LiKV~~~~~---r~ei~~i~~~fra~ivDv~~------~s~~iE~tG~  155 (193)
T 2fgc_A          102 PIDPLPENR----VEREMALIKVRFDED---KQEIFQLVEIFRGKIIDVSR------EGAIIEITGA  155 (193)
T ss_dssp             ECCSSGGGE----EEEEEEEEEEECSSC---HHHHHHHHHHTTCEEEEECS------SEEEEEEEEC
T ss_pred             EecCCCCcc----ceeEEEEEEEeCCcC---HHHHHHHHHHcCCEEEEEcC------CEEEEEEcCC
Confidence            0000  000    112456777776543   67888888888888887742      2345777773

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.27  E-value=0.032  Score=50.17  Aligned_cols=110  Identities=19%  Similarity=0.255  Sum_probs=72.1

Q ss_pred             CeEEEEEE-ecCCcchHHHHHHHHhhCCceEEEEEEEE-e--CCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCC
Q 012814           34 ECTVVKVD-SVNKPGILLEVVQVLSDLDLIITKAYISS-D--GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHIT  109 (456)
Q Consensus        34 ~~~~V~V~-~~DrpGLl~~i~~vL~~~glnI~~A~i~t-~--~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~  109 (456)
                      +.+.|+|. .+|+||.++++...|++.|+||.--.... .  +|..--.|.|...+-..  ..+.+++++..+..     
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~--a~~~L~~~~~el~~-----   87 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPA--AVEKLDSLRNEIGF-----   87 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHH--HHHHHHHTHHHHCC-----
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHH--HHHHHHHHHHhcCc-----
Confidence            45566654 68999999999999999999997544332 2  56655567775321110  01122222222210     


Q ss_pred             CCcccCCcccccccCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEE
Q 012814          110 AGAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAE  160 (456)
Q Consensus       110 ~~~~~~~~~~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~a~  160 (456)
                              ..+  .-..+...+.|.|.   ++||+.+++..+|++.|+||....
T Consensus        88 --------~~v--~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is  131 (181)
T 3s1t_A           88 --------SQL--LYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  131 (181)
T ss_dssp             --------SEE--EEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             --------ceE--EEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence                    011  12245778888876   899999999999999999998877

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.22  E-value=0.018  Score=52.18  Aligned_cols=64  Identities=17%  Similarity=0.389  Sum_probs=49.1

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEe-cCC-ceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHH
Q 012814          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW-THN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI  199 (456)
Q Consensus       128 ~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~-T~~-~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~  199 (456)
                      ...|+|...|+||.|++|+++|+..|+||.+..+. |.+ +...-++.+..+        ...+++|...|.+.
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~--------e~~ieqL~kQL~KL   94 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD--------DKTIEQIEKQAYKL   94 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC--------TTHHHHHHHHHTTS
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC--------HHHHHHHHHHhcCc
Confidence            57899999999999999999999999999998886 544 445556666652        23456777666543

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=95.96  E-value=0.071  Score=47.85  Aligned_cols=106  Identities=8%  Similarity=0.029  Sum_probs=69.3

Q ss_pred             CeEEEEEE-eeCchhHHHHHHHHHHhCCcEEEEEEEEec---CCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh-
Q 012814          267 GYSVVNVK-CRDRAKLMFDIVCTLTDMQYVVFHAAISSD---GPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR-  341 (456)
Q Consensus       267 ~~~~v~V~-~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~---~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~-  341 (456)
                      +.+.|+|. .+|+||.++++...|++.|+||.--.....   .|..--.|.|...+      .....++.+.+.+.+.- 
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~------~~~a~~~L~~~~~el~~~   88 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV------GPAAVEKLDSLRNEIGFS   88 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTT------HHHHHHHHHHTHHHHCCS
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhH------HHHHHHHHHHHHHhcCcc
Confidence            44555554 689999999999999999999975543222   34444457774321      11222222222222210 


Q ss_pred             c---CCCceEEEEEeC---CCcchHHHHHHHHHHCCceEEEEE
Q 012814          342 R---VSEGLSLELCAK---DRVGLLSEVTRILRENGLSVTRAG  378 (456)
Q Consensus       342 r---~~~~~~lev~~~---DrpGlL~~It~~l~~~gi~I~~a~  378 (456)
                      .   ......|.|.|.   ++||+.+++.++|++.||||....
T Consensus        89 ~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is  131 (181)
T 3s1t_A           89 QLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  131 (181)
T ss_dssp             EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             eEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence            1   124567777776   899999999999999999999876

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=95.83  E-value=0.035  Score=48.87  Aligned_cols=59  Identities=20%  Similarity=0.282  Sum_probs=44.9

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (456)
Q Consensus       130 ~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~  198 (456)
                      .|+|.|.||+|+|++|+.+|+++++||..+.+.+.| .    +++.-+  .   .+.+....+...+..
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g-~----i~~~~~--~---~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG-R----IYLNFA--E---LEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTT-E----EEEEEC--C---CCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCC-E----EEEEEE--e---CCHHHHHHHHHHHHc
Confidence            478999999999999999999999999999997763 2    445542  1   124556677766653

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=95.70  E-value=0.055  Score=49.46  Aligned_cols=107  Identities=8%  Similarity=0.047  Sum_probs=69.3

Q ss_pred             CCeEEEEEE-eeCchhHHHHHHHHHHhCCcEEEEEEEEec---CCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh
Q 012814          266 KGYSVVNVK-CRDRAKLMFDIVCTLTDMQYVVFHAAISSD---GPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR  341 (456)
Q Consensus       266 ~~~~~v~V~-~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~---~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~  341 (456)
                      ++...|++. .+|+||+.+++...|++.|+||---.....   ++.....|.+...+      ......+...+...+..
T Consensus        33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d------~~~~~~~l~~~~~~~~~  106 (200)
T 4go7_X           33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV------GPAAVEKLDSLRNEIGF  106 (200)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGG------HHHHHHHHHTTHHHHCC
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhh------HHHHHHHHHHHHhhhce
Confidence            356777876 599999999999999999999875543322   23444457664311      11222222222222211


Q ss_pred             -c---CCCceEEEEEe---CCCcchHHHHHHHHHHCCceEEEEE
Q 012814          342 -R---VSEGLSLELCA---KDRVGLLSEVTRILRENGLSVTRAG  378 (456)
Q Consensus       342 -r---~~~~~~lev~~---~DrpGlL~~It~~l~~~gi~I~~a~  378 (456)
                       +   .+....|.|.|   ..+||+.+++-++|++.||||...-
T Consensus       107 ~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs  150 (200)
T 4go7_X          107 SQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  150 (200)
T ss_dssp             SEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             eeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE
Confidence             1   12334555555   4899999999999999999999874

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=95.50  E-value=0.019  Score=52.86  Aligned_cols=49  Identities=12%  Similarity=0.271  Sum_probs=35.8

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCC-----ceeEEEEEEE
Q 012814          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-----RRIACVLYVN  175 (456)
Q Consensus       127 ~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~-----~~~~d~F~v~  175 (456)
                      ....|.+.+.||||+|++|+.+|+++++||...+..+..     +.+.-.+.+.
T Consensus         3 ~~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~   56 (223)
T 1y7p_A            3 MLRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIE   56 (223)
T ss_dssp             -CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEEC
T ss_pred             ceEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEEC
Confidence            356889999999999999999999999999999999853     3454444443

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.36  E-value=0.15  Score=51.93  Aligned_cols=103  Identities=13%  Similarity=0.094  Sum_probs=70.6

Q ss_pred             CCeEEEEEE-eeCchhHHHHHHHHHHhCCcEEEEEEEEec---CCceEEEEEEEccCCCCCCCHHHHHHHHHHHHH---H
Q 012814          266 KGYSVVNVK-CRDRAKLMFDIVCTLTDMQYVVFHAAISSD---GPHASQEYYIRHMDGCILDTEGEKERVIKCLEA---A  338 (456)
Q Consensus       266 ~~~~~v~V~-~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~---~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~---~  338 (456)
                      ++.+.|+|. .+|+||.++++...|+++|+||......+.   .|...-.|.|...      +.   ++..+.|++   .
T Consensus       262 ~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~------~~---~~a~~~l~~~~~~  332 (421)
T 3ab4_A          262 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRS------DG---RRAMEILKKLQVQ  332 (421)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETT------TH---HHHHHHHHHHHTT
T ss_pred             CCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEech------hH---HHHHHHHHHHHHH
Confidence            356788888 699999999999999999999987655333   3433445777431      11   122233333   2


Q ss_pred             Hhh-c---CCCceEEEEEeC---CCcchHHHHHHHHHHCCceEEEE
Q 012814          339 IRR-R---VSEGLSLELCAK---DRVGLLSEVTRILRENGLSVTRA  377 (456)
Q Consensus       339 l~~-r---~~~~~~lev~~~---DrpGlL~~It~~l~~~gi~I~~a  377 (456)
                      +.- .   ..+...+.|.|.   ++||+++++.++|.+.||||...
T Consensus       333 ~~~~~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i  378 (421)
T 3ab4_A          333 GNWTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI  378 (421)
T ss_dssp             TTCSEEEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEE
T ss_pred             cCCceEEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEE
Confidence            211 0   123456788886   79999999999999999999955

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.12  E-value=0.44  Score=48.44  Aligned_cols=109  Identities=21%  Similarity=0.285  Sum_probs=72.9

Q ss_pred             CeEEEEEE-ecCCcchHHHHHHHHhhCCceEEEEEEEEe---CCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCC
Q 012814           34 ECTVVKVD-SVNKPGILLEVVQVLSDLDLIITKAYISSD---GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHIT  109 (456)
Q Consensus        34 ~~~~V~V~-~~DrpGLl~~i~~vL~~~glnI~~A~i~t~---~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~  109 (456)
                      +.+.|+|. .+|+||.++++.+.|+++|+||.--.+.|.   +|..--.|.|...  .   .++..+.|++ +...+...
T Consensus       263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~--~---~~~a~~~l~~-~~~~~~~~  336 (421)
T 3ab4_A          263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRS--D---GRRAMEILKK-LQVQGNWT  336 (421)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETT--T---HHHHHHHHHH-HHTTTTCS
T ss_pred             CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEech--h---HHHHHHHHHH-HHHHcCCc
Confidence            34567777 699999999999999999999986654432   4544445777531  1   1223344443 32222210


Q ss_pred             CCcccCCcccccccCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEE
Q 012814          110 AGAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAA  159 (456)
Q Consensus       110 ~~~~~~~~~~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~a  159 (456)
                               .+  .-..+...+.|.|.   ++||+++++..+|++.|+||.-.
T Consensus       337 ---------~v--~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i  378 (421)
T 3ab4_A          337 ---------NV--LYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI  378 (421)
T ss_dssp             ---------EE--EEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEE
T ss_pred             ---------eE--EEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEE
Confidence                     11  11346778888886   79999999999999999999844

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=94.84  E-value=0.053  Score=49.88  Aligned_cols=48  Identities=19%  Similarity=0.131  Sum_probs=36.9

Q ss_pred             eEEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEe-----CCEEEEEEEEE
Q 012814           35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-----GGWFMDVFHVI   82 (456)
Q Consensus        35 ~~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~-----~g~~~d~f~V~   82 (456)
                      ...|.|.+.||||+|++++.+|++++.||...+..++     ++.+.-.+.+.
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~   56 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIE   56 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEEC
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEEC
Confidence            4678999999999999999999999999999999984     56766555554

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=94.73  E-value=0.057  Score=49.36  Aligned_cols=121  Identities=18%  Similarity=0.186  Sum_probs=74.6

Q ss_pred             CCCEE-EEecCCCCCeEEEEEE-ecCCcchHHHHHHHHhhCCceEEEEEEEE---eCCEEEEEEEEEeCCCCCCCChhHH
Q 012814           21 NPPRA-SVDNSSCPECTVVKVD-SVNKPGILLEVVQVLSDLDLIITKAYISS---DGGWFMDVFHVIDQQGKKITDGKTI   95 (456)
Q Consensus        21 ~~p~V-~v~~~~~~~~~~V~V~-~~DrpGLl~~i~~vL~~~glnI~~A~i~t---~~g~~~d~f~V~~~~g~~~~~~~~~   95 (456)
                      .+|.| -|...  .+...|+|. .||+||..+++.+.|++.|+||---....   .++.....|.+...+         .
T Consensus        22 E~~vVtGIa~~--~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d---------~   90 (200)
T 4go7_X           22 EDPILTGVAHD--RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV---------G   90 (200)
T ss_dssp             CSCEEEEEEEE--CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGG---------H
T ss_pred             ccCcEEEEEcc--CCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhh---------H
Confidence            45544 33322  356777776 69999999999999999999997543322   245565567775321         1


Q ss_pred             HHHHHHHCCCCCCCCCcccCCcccccccCCCceEEEEEEe---CCcccHHHHHHHHHHhCCceEEEEE
Q 012814           96 DYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIG---RDRPGLLSEISAVLANLRFNVAAAE  160 (456)
Q Consensus        96 ~~L~~~L~~~l~~~~~~~~~~~~~v~~~~~~~~t~i~v~~---~DrpGLL~~I~~~l~~~gi~I~~a~  160 (456)
                      +...+.|..... .    .. ...+  ..+.+...+.+.|   ..+||+.+++..+|++.|+||.-..
T Consensus        91 ~~~~~~l~~~~~-~----~~-~~~v--~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs  150 (200)
T 4go7_X           91 PAAVEKLDSLRN-E----IG-FSQL--LYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  150 (200)
T ss_dssp             HHHHHHHHTTHH-H----HC-CSEE--EEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             HHHHHHHHHHHh-h----hc-eeeE--EEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE
Confidence            222222322100 0    00 0011  1123455666664   5899999999999999999998875

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=94.22  E-value=0.25  Score=48.16  Aligned_cols=106  Identities=14%  Similarity=0.248  Sum_probs=69.0

Q ss_pred             HHhCC-cEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhcCCCceEEEEEeC-CCcchHHHHHHH
Q 012814          289 LTDMQ-YVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCAK-DRVGLLSEVTRI  366 (456)
Q Consensus       289 L~~~~-l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~r~~~~~~lev~~~-DrpGlL~~It~~  366 (456)
                      -..+| |+|..-.|....+.. -.|+|..........                 .....|.|-+..+ |+||-|+++-..
T Consensus       161 A~~Yg~L~il~~~I~D~~~N~-TRFlvl~~~~~~~~~-----------------~~~~kTSl~f~~~~~~pGaL~~~L~~  222 (313)
T 3mwb_A          161 AAEQPGLNVLAEDIGDNPDAV-TRFILVSRPGALPER-----------------TGADKTTVVVPLPEDHPGALMEILDQ  222 (313)
T ss_dssp             HHHCTTCEEEESCCCSCTTCE-EEEEEEECSCCCCCC-----------------CSSEEEEEEEECSSCCTTHHHHHHHH
T ss_pred             HHHcCChhhhhhcccCCCcce-eEEEEEecCCCCCCC-----------------CCCCeEEEEEEeCCCCCCHHHHHHHH
Confidence            34578 999987776653322 248876554321110                 0123567777775 999999999999


Q ss_pred             HHHCCceEEEEEEeecCcee-eeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814          367 LRENGLSVTRAGVSTVGEQA-VNVFYVRDASGNPVDMKTIEALRKEIGH  414 (456)
Q Consensus       367 l~~~gi~I~~a~i~T~g~~~-~d~F~v~d~~g~~l~~~~~~~L~~~l~~  414 (456)
                      |+.+|||+.+.+..-....- +=.||| |.+|..-+ ..+++.-++|..
T Consensus       223 Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~~~d-~~v~~aL~~L~~  269 (313)
T 3mwb_A          223 FASRGVNLSRIESRPTGQYLGHYFFSI-DADGHATD-SRVADALAGLHR  269 (313)
T ss_dssp             HHTTTCCEEEEEEEECSSSTTSEEEEE-EEESCTTS-HHHHHHHHHHHH
T ss_pred             HHHCCccEEEEEEeecCCCCccEEEEE-EEeCCCCc-HHHHHHHHHHHH
Confidence            99999999999987766554 447888 66676533 333333334443

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=93.94  E-value=0.35  Score=46.05  Aligned_cols=100  Identities=14%  Similarity=0.203  Sum_probs=66.3

Q ss_pred             HhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhcCCCceEEEEEe---CCCcchHHHHHHH
Q 012814          290 TDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRRVSEGLSLELCA---KDRVGLLSEVTRI  366 (456)
Q Consensus       290 ~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~r~~~~~~lev~~---~DrpGlL~~It~~  366 (456)
                      ..+||+|..-.|....+.. -.|+|..... +..                    ...|.|-+..   .|+||-|+++-..
T Consensus       152 ~~ygL~il~~~I~D~~~N~-TRF~vl~~~~-~~~--------------------~~ktsl~f~~~~~~~~pGaL~~~L~~  209 (267)
T 2qmw_A          152 EAYGFTPIDTHIEDYPHNV-TRFLVIKNQQ-QFD--------------------QNATSLMFLITPMHDKPGLLASVLNT  209 (267)
T ss_dssp             GGGTCCEEEECCCSCSCCE-EEEEEEESCC-CCC--------------------SSCSEEEEEEEESSCCTTHHHHHHHH
T ss_pred             HHCCCcEeeccccCCCCCc-eEEEEEecCC-CCC--------------------CCeEEEEEEcCCCCCCcChHHHHHHH
Confidence            3458888888776654322 2477765443 110                    1356677777   8999999999999


Q ss_pred             HHHCCceEEEEEEeecCce-eeeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814          367 LRENGLSVTRAGVSTVGEQ-AVNVFYVRDASGNPVDMKTIEALRKEIGH  414 (456)
Q Consensus       367 l~~~gi~I~~a~i~T~g~~-~~d~F~v~d~~g~~l~~~~~~~L~~~l~~  414 (456)
                      |+.+|||+.+.+....... .+=.||| |.+ .. .+..+++.-++|..
T Consensus       210 Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~e-~~-~d~~v~~aL~~L~~  255 (267)
T 2qmw_A          210 FALFNINLSWIESRPLKTQLGMYRFFV-QAD-SA-ITTDIKKVIAILET  255 (267)
T ss_dssp             HHTTTCCEEEEEEEECSSSTTCEEEEE-EES-CC-SCHHHHHHHHHHHH
T ss_pred             HHHcCCCeeEEEEeecCCCCccEEEEE-EEe-cC-CcHHHHHHHHHHHH
Confidence            9999999999998877665 4458888 444 33 33333433344433

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=92.70  E-value=0.27  Score=47.31  Aligned_cols=55  Identities=18%  Similarity=0.253  Sum_probs=44.1

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCce-eeeEEEEEeCCCCCCC
Q 012814          346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQ-AVNVFYVRDASGNPVD  401 (456)
Q Consensus       346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~-~~d~F~v~d~~g~~l~  401 (456)
                      .|.|-+..+|+||-|+++-..|+.+|||+.+.+......+ -+=.||| |.+|..-+
T Consensus       200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffv-D~eg~~~d  255 (283)
T 2qmx_A          200 KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYA-DFIGHRED  255 (283)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEE-EEESCTTS
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEE-EEecCCCc
Confidence            4566666789999999999999999999999998877665 4457888 66676544

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=91.30  E-value=0.98  Score=44.27  Aligned_cols=46  Identities=20%  Similarity=0.348  Sum_probs=38.5

Q ss_pred             CCcchHHHHHHHHHHCCceEEEEEEeecCceeee-EEEEEeCCCCCCC
Q 012814          355 DRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVN-VFYVRDASGNPVD  401 (456)
Q Consensus       355 DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d-~F~v~d~~g~~l~  401 (456)
                      |+||-||++-..|+.+|||+.+.+......+-++ .||| |.+|..-+
T Consensus       217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~~~d  263 (329)
T 3luy_A          217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIV-TLDAAPWE  263 (329)
T ss_dssp             CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEE-EESSCTTS
T ss_pred             CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEE-EEeCCcCC
Confidence            7999999999999999999999998877766555 7777 66686644

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=91.29  E-value=0.84  Score=46.12  Aligned_cols=50  Identities=22%  Similarity=0.318  Sum_probs=44.7

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEe
Q 012814          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (456)
Q Consensus       127 ~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~  176 (456)
                      +...|.+.-.|+||.+..|+.+|.++|+||....+.+.|+.+.-++.+..
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD~  379 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEA  379 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEEC
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcCC
Confidence            45668889999999999999999999999999999998888888877765

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=91.01  E-value=0.72  Score=48.27  Aligned_cols=63  Identities=21%  Similarity=0.300  Sum_probs=47.4

Q ss_pred             CCceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecC--ceeeeEEEEEeCCCCCCChHHHHHHHH
Q 012814          344 SEGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVG--EQAVNVFYVRDASGNPVDMKTIEALRK  410 (456)
Q Consensus       344 ~~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g--~~~~d~F~v~d~~g~~l~~~~~~~L~~  410 (456)
                      +..+.|-+.-.|+||.+..|+..|.++||||...++....  +.+.=++.+    ..+++++.+++|++
T Consensus       452 ~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~v----d~~~~~~~l~~l~~  516 (529)
T 1ygy_A          452 AQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL----DQDVPDDVRTAIAA  516 (529)
T ss_dssp             SCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE----SSCCCHHHHHHHHH
T ss_pred             CCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEE----CCCCCHHHHHHHhc
Confidence            3467788899999999999999999999999999998753  334433333    33566666666664

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=90.96  E-value=1  Score=46.08  Aligned_cols=103  Identities=11%  Similarity=0.160  Sum_probs=69.1

Q ss_pred             CeEEEEEEe---eCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh-c
Q 012814          267 GYSVVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRR-R  342 (456)
Q Consensus       267 ~~~~v~V~~---~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~-r  342 (456)
                      +.+.|+|.+   ++.||.++++...|+++|++|....   .+. .--.|.|...+-.     ...+++.+.|.+.+.- .
T Consensus       297 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~---~~~-~~is~~V~~~d~~-----~~~~~~~~el~~~~~~~~  367 (446)
T 3tvi_A          297 NFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMP---SGV-DSVSLVIEDCKLD-----GKCDKIIEEIKKQCNPDS  367 (446)
T ss_dssp             EEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBC---EET-TEEEEEEEHHHHT-----TTHHHHHHHHHHHSCCSE
T ss_pred             CEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEe---cCC-CEEEEEEecchHH-----HHHHHHHHHHHHhcCCCc
Confidence            567888886   6999999999999999999997432   222 2224677432211     0223344444433310 1


Q ss_pred             ---CCCceEEEEEeC---CCcchHHHHHHHHHHCCceEEEEE
Q 012814          343 ---VSEGLSLELCAK---DRVGLLSEVTRILRENGLSVTRAG  378 (456)
Q Consensus       343 ---~~~~~~lev~~~---DrpGlL~~It~~l~~~gi~I~~a~  378 (456)
                         ......|.|.|.   .+||+.+++.++|++.||||....
T Consensus       368 v~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIs  409 (446)
T 3tvi_A          368 IEIHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMID  409 (446)
T ss_dssp             EEEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEE
Confidence               123457888876   589999999999999999998764

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=90.80  E-value=0.77  Score=48.07  Aligned_cols=53  Identities=21%  Similarity=0.288  Sum_probs=43.9

Q ss_pred             CCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec--CCceeEEEEEEEe
Q 012814          124 SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVND  176 (456)
Q Consensus       124 ~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T--~~~~~~d~F~v~~  176 (456)
                      ..+..+.+.+.-.|+||.+..|+..|.++|+||.+.++..  .++.+.-++.+..
T Consensus       450 ~~~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~  504 (529)
T 1ygy_A          450 LRAQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQ  504 (529)
T ss_dssp             EESCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESS
T ss_pred             ecCCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECC
Confidence            3456788889999999999999999999999999999987  4556665665544

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=90.77  E-value=0.41  Score=48.44  Aligned_cols=47  Identities=21%  Similarity=0.371  Sum_probs=40.1

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEE
Q 012814          346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYV  392 (456)
Q Consensus       346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v  392 (456)
                      ...|-+.-.|+||.+..|+.+|.++|+||......+.|+.+-=++-+
T Consensus       331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidv  377 (404)
T 1sc6_A          331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI  377 (404)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEc
Confidence            35677888999999999999999999999999999977766555545

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=90.02  E-value=3.4  Score=42.22  Aligned_cols=120  Identities=15%  Similarity=0.212  Sum_probs=73.7

Q ss_pred             eEEEEEEe---cCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCCC
Q 012814           35 CTVVKVDS---VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAG  111 (456)
Q Consensus        35 ~~~V~V~~---~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~~  111 (456)
                      .+.|+|.+   ++.||.++++..+|+++|++|.--  .+ +...+ .|.|...+-.. ......++|+..+...      
T Consensus       298 ~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i--~~-~~~~i-s~~V~~~d~~~-~~~~~~~el~~~~~~~------  366 (446)
T 3tvi_A          298 FTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHM--PS-GVDSV-SLVIEDCKLDG-KCDKIIEEIKKQCNPD------  366 (446)
T ss_dssp             EEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEB--CE-ETTEE-EEEEEHHHHTT-THHHHHHHHHHHSCCS------
T ss_pred             EEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEE--ec-CCCEE-EEEEecchHHH-HHHHHHHHHHHhcCCC------
Confidence            44677775   689999999999999999999632  22 22122 36665321110 0112333444333210      


Q ss_pred             cccCCcccccccCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEe
Q 012814          112 AKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (456)
Q Consensus       112 ~~~~~~~~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~  176 (456)
                             .+  .-..+...|.|.|.   ++||+.+++..+|++.|+||......|..-  .-.|.|..
T Consensus       367 -------~v--~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtSei--~Is~vV~~  423 (446)
T 3tvi_A          367 -------SI--EIHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSSEI--NVIVGVET  423 (446)
T ss_dssp             -------EE--EEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSCTT--EEEEEEEG
T ss_pred             -------cE--EEeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCCCc--eEEEEEcH
Confidence                   11  11235778899876   589999999999999999998766443322  23355544

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=88.11  E-value=1.8  Score=41.50  Aligned_cols=64  Identities=16%  Similarity=0.160  Sum_probs=49.3

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 012814          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (456)
Q Consensus       127 ~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~  197 (456)
                      ..|.|-+..+|+||-|+++-..|+.+|+|+....... .+....-+|||.-.  |+.- |    ..++++|.
T Consensus       199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~e--g~~~-d----~~v~~aL~  263 (283)
T 2qmx_A          199 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFI--GHRE-D----QNVHNALE  263 (283)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEE--SCTT-S----HHHHHHHH
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEe--cCCC-c----HHHHHHHH
Confidence            4677777888999999999999999999999998876 45557888999773  5442 3    34555554

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=86.48  E-value=2.5  Score=41.08  Aligned_cols=55  Identities=24%  Similarity=0.230  Sum_probs=44.6

Q ss_pred             CceEEEEEEeC-CcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEeCCCCCc
Q 012814          126 GDHTAIELIGR-DRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRA  182 (456)
Q Consensus       126 ~~~t~i~v~~~-DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~~~~g~~  182 (456)
                      ...|.|-+..+ |+||-|+++-..|+.+|+|+....... .++...=+|||.-.  |+.
T Consensus       199 ~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e--g~~  255 (313)
T 3mwb_A          199 ADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDAD--GHA  255 (313)
T ss_dssp             SEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEE--SCT
T ss_pred             CCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEe--CCC
Confidence            35788888885 999999999999999999999988876 45556778998763  543

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=86.13  E-value=2  Score=37.11  Aligned_cols=108  Identities=19%  Similarity=0.214  Sum_probs=64.8

Q ss_pred             CeEEEEEEe---eCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhc-
Q 012814          267 GYSVVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEAAIRRR-  342 (456)
Q Consensus       267 ~~~~v~V~~---~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~~l~~r-  342 (456)
                      +...|+|.+   +++||..+++...|+++|+||.-..   .... --.|.|.+.+        ..+++.+.|.+ + .. 
T Consensus        17 ~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~---~s~~-~Isf~v~~~~--------~~~~il~~l~~-~-~~v   82 (157)
T 3mah_A           17 GITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVA---TSEV-GVSLTIDNDK--------NLPDIVRALSD-I-GDV   82 (157)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEE---CCSS-EEEEEESCCT--------THHHHHHHHTT-T-EEE
T ss_pred             CEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEE---ecCC-EEEEEECChH--------HHHHHHHHHhc-c-CeE
Confidence            456788874   5789999999999999999985433   2222 2246663211        12233333322 1 11 


Q ss_pred             --CCCceEEEEEeC---CCcchHHHHHHHHHHCCceEEEEEEeecCceeee-EEEEE
Q 012814          343 --VSEGLSLELCAK---DRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVN-VFYVR  393 (456)
Q Consensus       343 --~~~~~~lev~~~---DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d-~F~v~  393 (456)
                        ......|.|.|.   ++||+.+++..+|+  |++|....   +|..... .|.|.
T Consensus        83 ~~~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~is---qg~Se~~is~vv~  134 (157)
T 3mah_A           83 TVDKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMIS---YGGSNYNVSVLVK  134 (157)
T ss_dssp             EEEEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEE---ECSSSSCEEEEEE
T ss_pred             EEeCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEe---eCCCCCEEEEEEc
Confidence              113356777765   68999999999999  99988753   3433333 45553

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=86.09  E-value=2.7  Score=39.86  Aligned_cols=51  Identities=20%  Similarity=0.322  Sum_probs=43.0

Q ss_pred             CceEEEEEEe---CCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEe
Q 012814          126 GDHTAIELIG---RDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND  176 (456)
Q Consensus       126 ~~~t~i~v~~---~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~  176 (456)
                      ...|.|-+..   .|+||-|+++-..|+.+|+|+....... .+....-+|||.-
T Consensus       184 ~~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~  238 (267)
T 2qmw_A          184 QNATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA  238 (267)
T ss_dssp             SSCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE
T ss_pred             CCeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEE
Confidence            4567777777   8999999999999999999999998876 4455778899977

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=85.52  E-value=3.9  Score=41.36  Aligned_cols=50  Identities=20%  Similarity=0.270  Sum_probs=44.9

Q ss_pred             CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEE
Q 012814          126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVN  175 (456)
Q Consensus       126 ~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~  175 (456)
                      +....|.+.-.|.||.|..|+.+|+++|+||......|.|+-+.-+.-+.
T Consensus       341 ~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~  390 (416)
T 3k5p_A          341 PTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEAD  390 (416)
T ss_dssp             SSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEEC
T ss_pred             CCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEec
Confidence            45789999999999999999999999999999999999998877666665

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=85.46  E-value=5.3  Score=39.04  Aligned_cols=53  Identities=15%  Similarity=0.186  Sum_probs=41.0

Q ss_pred             eEEEEEEeC--CcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEeCCCCCc
Q 012814          128 HTAIELIGR--DRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRA  182 (456)
Q Consensus       128 ~t~i~v~~~--DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~~~~g~~  182 (456)
                      .+.+.+...  |+||-|+++-..|+.+|+|+....... .+....=+|||.-.  |+.
T Consensus       206 kts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e--g~~  261 (329)
T 3luy_A          206 YESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLD--AAP  261 (329)
T ss_dssp             EEEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEES--SCT
T ss_pred             ceEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEe--CCc
Confidence            344444444  799999999999999999999988876 55557778998773  544

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=83.59  E-value=4.3  Score=34.92  Aligned_cols=113  Identities=18%  Similarity=0.140  Sum_probs=68.2

Q ss_pred             CeEEEEEEe---cCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 012814           34 ECTVVKVDS---VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA  110 (456)
Q Consensus        34 ~~~~V~V~~---~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~l~~~~  110 (456)
                      +...|+|.+   ++.||..+++.+.|+++|+||.--.  + +... -.|.|.+.  .      ...++.+.|... .   
T Consensus        17 ~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~--~-s~~~-Isf~v~~~--~------~~~~il~~l~~~-~---   80 (157)
T 3mah_A           17 GITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVA--T-SEVG-VSLTIDND--K------NLPDIVRALSDI-G---   80 (157)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEE--C-CSSE-EEEEESCC--T------THHHHHHHHTTT-E---
T ss_pred             CEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEE--e-cCCE-EEEEECCh--H------HHHHHHHHHhcc-C---
Confidence            567888874   5789999999999999999985322  2 2221 23556421  1      123333344331 0   


Q ss_pred             CcccCCcccccccCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEe
Q 012814          111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (456)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~t~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~  176 (456)
                              .+  .-..+...+.+.|.   ++||+.+++..+|+  |+||......+..  ..-.|.|..
T Consensus        81 --------~v--~~~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~Se--~~is~vv~~  135 (157)
T 3mah_A           81 --------DV--TVDKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMISYGGSN--YNVSVLVKA  135 (157)
T ss_dssp             --------EE--EEEEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEEECSSS--SCEEEEEEG
T ss_pred             --------eE--EEeCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEeeCCCC--CEEEEEEcH
Confidence                    01  11235678888875   68999999999999  9998776543332  233455544

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=83.21  E-value=0.98  Score=46.19  Aligned_cols=34  Identities=35%  Similarity=0.505  Sum_probs=30.0

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEE
Q 012814          346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGV  379 (456)
Q Consensus       346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i  379 (456)
                      .|-+.+...|+||+|.+|+.+|.++||+|.+..=
T Consensus       359 ~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q  392 (444)
T 3mtj_A          359 AYYLRLRAFDRPGVLADITRILADSSISIDAMVQ  392 (444)
T ss_dssp             EEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             eeEEEEEecCcccHHHHHHHHHHhcCCceeEEee
Confidence            4678999999999999999999999999998753

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=82.72  E-value=2.9  Score=42.69  Aligned_cols=51  Identities=20%  Similarity=0.307  Sum_probs=37.9

Q ss_pred             CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecC--CceeEEEEEEEe
Q 012814          126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVND  176 (456)
Q Consensus       126 ~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~--~~~~~d~F~v~~  176 (456)
                      ...+-+.+...|+||.|+.|+++|.++|++|.+....-.  ++....+..+|.
T Consensus       357 ~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th  409 (444)
T 3mtj_A          357 RTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTH  409 (444)
T ss_dssp             EEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEEC
T ss_pred             ceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEec
Confidence            457788889999999999999999999999999876542  122345666665

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=80.87  E-value=2.8  Score=43.59  Aligned_cols=117  Identities=15%  Similarity=0.210  Sum_probs=73.4

Q ss_pred             CeEEEEEEe---eCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCC-CHHHHHHHHHHHHHHHhhc
Q 012814          267 GYSVVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILD-TEGEKERVIKCLEAAIRRR  342 (456)
Q Consensus       267 ~~~~v~V~~---~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~-~~~~~~~l~~~L~~~l~~r  342 (456)
                      +.+.|+|.+   ++++|.++++..+|+++|++|..-.  +. . .--.|.|...+..... ..+.++++.+.|.. + ..
T Consensus       340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~--ss-e-~sis~~v~~~~~~~~~~~~~~l~~~~~el~~-~-~~  413 (510)
T 2cdq_A          340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA--TS-E-VSISLTLDPSKLWSRELIQQELDHVVEELEK-I-AV  413 (510)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE--EE-T-TEEEEEECCGGGSSSCCCHHHHHHHHHHHTT-T-SE
T ss_pred             CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEE--eC-C-CeEEEEEechHhhhhhHHHHHHHHHHHHhCC-C-Ce
Confidence            567889986   6799999999999999999998763  21 1 1223666432211100 12233333333321 0 01


Q ss_pred             ---CCCceEEEEEeC--CCcchHHHHHHHHHHCCceEEEEEEeecCceeee-EEEE
Q 012814          343 ---VSEGLSLELCAK--DRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVN-VFYV  392 (456)
Q Consensus       343 ---~~~~~~lev~~~--DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d-~F~v  392 (456)
                         ..+-..|.|.|.  .+||+.+++..+|.+.||||...   ++|..... .|.|
T Consensus       414 v~~~~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mI---sqGsSei~Is~vV  466 (510)
T 2cdq_A          414 VNLLKGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMI---SQGASKVNISFIV  466 (510)
T ss_dssp             EEEEEEEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEE---EECTTCSEEEEEE
T ss_pred             EEEeCCcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEE---EecCCcceEEEEE
Confidence               113456777777  78899999999999999999876   34544444 4555

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=80.51  E-value=22  Score=36.84  Aligned_cols=138  Identities=14%  Similarity=0.155  Sum_probs=83.0

Q ss_pred             CeEEEEEEe---cCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCCCCCCC-ChhHHHHHHHHHCCCCCCC
Q 012814           34 ECTVVKVDS---VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKIT-DGKTIDYIEKALGPKGHIT  109 (456)
Q Consensus        34 ~~~~V~V~~---~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~-~~~~~~~L~~~L~~~l~~~  109 (456)
                      +.+.|+|.+   +++||.++++..+|+++|+||.--.  + +...+ .|.|...+..... ..+.++.+.+.|... .  
T Consensus       340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~--s-se~si-s~~v~~~~~~~~~~~~~~l~~~~~el~~~-~--  412 (510)
T 2cdq_A          340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA--T-SEVSI-SLTLDPSKLWSRELIQQELDHVVEELEKI-A--  412 (510)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE--E-ETTEE-EEEECCGGGSSSCCCHHHHHHHHHHHTTT-S--
T ss_pred             CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEE--e-CCCeE-EEEEechHhhhhhHHHHHHHHHHHHhCCC-C--
Confidence            445677875   6799999999999999999998552  2 12222 3555432111100 123445555555431 1  


Q ss_pred             CCcccCCcccccccCCCceEEEEEEeC--CcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChH
Q 012814          110 AGAKTWPSKQVGVHSVGDHTAIELIGR--DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQT  187 (456)
Q Consensus       110 ~~~~~~~~~~v~~~~~~~~t~i~v~~~--DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~  187 (456)
                             ...    -..+...|.|.|.  .+||+.+++..+|++.|+||.-....+  ....-.|.|..          +
T Consensus       413 -------~v~----~~~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIsqGs--Sei~Is~vV~~----------~  469 (510)
T 2cdq_A          413 -------VVN----LLKGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGA--SKVNISFIVNE----------A  469 (510)
T ss_dssp             -------EEE----EEEEEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEEECT--TCSEEEEEEEH----------H
T ss_pred             -------eEE----EeCCcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEEecC--CcceEEEEEeH----------H
Confidence                   011    1235778888887  788999999999999999998664322  22333355544          2


Q ss_pred             HHHHHHHHHHHHhc
Q 012814          188 RLSLMEEQLKNILR  201 (456)
Q Consensus       188 ~~~~l~~~L~~~L~  201 (456)
                      ..++.-++|++.+-
T Consensus       470 d~~~Av~aLH~~f~  483 (510)
T 2cdq_A          470 EAEGCVQALHKSFF  483 (510)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            33444455555554

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=80.39  E-value=6.9  Score=39.53  Aligned_cols=49  Identities=6%  Similarity=0.019  Sum_probs=42.0

Q ss_pred             CCeEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEE
Q 012814          266 KGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYI  314 (456)
Q Consensus       266 ~~~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V  314 (456)
                      .+...|.+.=+|+||.+.+|..+|+++|+||.+-...|.+++.+.+.-|
T Consensus       341 ~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~  389 (416)
T 3k5p_A          341 PTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEA  389 (416)
T ss_dssp             SSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             CCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEe
Confidence            3567899999999999999999999999999998888888877544333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	456
d1y7pa2	77	d.58.18.12 (A:2-78) Hypothetical protein AF1403, N	5e-05
d1u8sa1	86	d.58.18.5 (A:2-87) putative transcriptional repres	3e-04
d1u8sa1	86	d.58.18.5 (A:2-87) putative transcriptional repres	7e-04

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 39.4 bits (92), Expect = 5e-05
 Identities = 7/53 (13%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIA---CVLYVNDDT 178
             + +I  ++ G+L +++ ++A    N+  A+ +           ++Y   + 
Sbjct: 2   RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEG 54

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 10/51 (19%), Positives = 24/51 (47%)

Query: 124 SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYV 174
           S+  H  I  +G DRPG+ +E+  ++     N+  + +    +    ++ +
Sbjct: 1   SLTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLI 51

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 36.3 bits (84), Expect = 7e-04
 Identities = 13/63 (20%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 354 KDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIG 413
            DR G+ +EV R++ + G ++  + ++  G++   +  +   SG+P ++  +E     +G
Sbjct: 13  TDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLI---SGSPSNITRVETTLPLLG 69

Query: 414 HTM 416
              
Sbjct: 70  QQH 72

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	456
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.82
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.67
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.58
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.55
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.31
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.27
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.74
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.65
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.6
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.5
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.44
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.41
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.36
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.35
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.14
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.12
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	97.09
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	97.06
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.04
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	96.99
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	96.88
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	96.52
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	96.22
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	95.49
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	93.82
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	93.5
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	86.93
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	84.56
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	83.89
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	82.67
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	82.44
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	82.03

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.82  E-value=1.2e-08  Score=79.51  Aligned_cols=65  Identities=17%  Similarity=0.400  Sum_probs=57.5

Q ss_pred             CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814          126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (456)
Q Consensus       126 ~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~  198 (456)
                      .++++|++.|+||||++++|+++|+++||||.+++..+.++.+..++.++.+        +..+++++..|..
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~--------~~~~~~l~~~L~~   67 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS--------PSNITRVETTLPL   67 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC--------HHHHHHHHHHHHH
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcC--------cccHHHHHHHHHH
Confidence            3588999999999999999999999999999999999999999999998874        4556778877764

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.67  E-value=8.2e-08  Score=74.59  Aligned_cols=65  Identities=17%  Similarity=0.140  Sum_probs=53.6

Q ss_pred             CCeEEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEEEccCCCCCCCHHHHHHHHHHHHH
Q 012814          266 KGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYIRHMDGCILDTEGEKERVIKCLEA  337 (456)
Q Consensus       266 ~~~~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~l~~~L~~  337 (456)
                      ..+++|++.|+||||++++++++|+++|+||.+++..+.++.+.-.+.|.-       ++...++|++.|++
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~-------~~~~~~~l~~~L~~   67 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG-------SPSNITRVETTLPL   67 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE-------CHHHHHHHHHHHHH
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEc-------CcccHHHHHHHHHH
Confidence            467899999999999999999999999999999999999998876666642       23456677776654

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.58  E-value=1.1e-07  Score=73.24  Aligned_cols=63  Identities=17%  Similarity=0.409  Sum_probs=52.2

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (456)
Q Consensus       129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~  198 (456)
                      ++|++.|+|||||+++|+++|+++|+||.+.+..+.++.+.-.+.+..+ .+.   +   .++++++|..
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~-~~~---~---~~~l~~~l~~   65 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD-EKQ---D---FTYLRNEFEA   65 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES-SCC---C---HHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEe-cCC---C---HHHHHHHHHH
Confidence            6899999999999999999999999999999999988888888888774 221   1   3567777654

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.55  E-value=2.1e-07  Score=71.62  Aligned_cols=50  Identities=20%  Similarity=0.262  Sum_probs=45.0

Q ss_pred             EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEeCC
Q 012814           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQ   85 (456)
Q Consensus        36 ~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~~~   85 (456)
                      +.|+|.|+||||+++.++++|+++|+||.+.+.++.++.+.-.+.+..+.
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~~   52 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE   52 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEec
Confidence            57999999999999999999999999999999999989888777776544

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.31  E-value=6.5e-07  Score=70.38  Aligned_cols=67  Identities=13%  Similarity=0.262  Sum_probs=46.6

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCce----eeeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814          347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQ----AVNVFYVRDASGNPVDMKTIEALRKEIGH  414 (456)
Q Consensus       347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~----~~d~F~v~d~~g~~l~~~~~~~L~~~l~~  414 (456)
                      ..|.|.|+|||||+++||++|+++|+||..+.-.|+...    ..+.|+++-.-..|-+ ..+.+|+++|..
T Consensus         7 v~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~~-~~~~~l~~~l~~   77 (93)
T d1u8sa2           7 VEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSG-CNLMQLQEEFDA   77 (93)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTT-SCHHHHHHHHHH
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCcc-ccHHHHHHHHHH
Confidence            457788999999999999999999999999998887543    4557877543332322 224555565544

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.27  E-value=1e-06  Score=69.15  Aligned_cols=66  Identities=14%  Similarity=0.186  Sum_probs=46.0

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCce----eEEEEE----EEeCCCCCcCCChHHHHHHHHHHHH
Q 012814          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRR----IACVLY----VNDDTTCRAVGDQTRLSLMEEQLKN  198 (456)
Q Consensus       127 ~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~----~~d~F~----v~~~~~g~~l~d~~~~~~l~~~L~~  198 (456)
                      ....|+|.|+|||||+++|+++|+++|+||.+.+..|..+.    ....|.    +.-| .+      .....|+++|..
T Consensus         5 ~tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p-~~------~~~~~l~~~l~~   77 (93)
T d1u8sa2           5 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD-SG------CNLMQLQEEFDA   77 (93)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC-TT------SCHHHHHHHHHH
T ss_pred             eEEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcC-cc------ccHHHHHHHHHH
Confidence            45678888999999999999999999999999998874332    223344    3443 11      224677777764


Q ss_pred             H
Q 012814          199 I  199 (456)
Q Consensus       199 ~  199 (456)
                      .
T Consensus        78 l   78 (93)
T d1u8sa2          78 L   78 (93)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.74  E-value=3.9e-05  Score=56.74  Aligned_cols=48  Identities=13%  Similarity=0.177  Sum_probs=43.8

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeC
Q 012814          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDD  177 (456)
Q Consensus       130 ~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~  177 (456)
                      +|.|..+|+||-|++++++|.++|+||++..++..++.+.-+|.+.++
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd~   48 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNM   48 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCH
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECCH
Confidence            578999999999999999999999999999999988888888888663

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.65  E-value=0.00017  Score=54.09  Aligned_cols=62  Identities=21%  Similarity=0.292  Sum_probs=45.6

Q ss_pred             CceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecC--ceeeeEEEEEeCCCCCCChHHHHHHHH
Q 012814          345 EGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVG--EQAVNVFYVRDASGNPVDMKTIEALRK  410 (456)
Q Consensus       345 ~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g--~~~~d~F~v~d~~g~~l~~~~~~~L~~  410 (456)
                      +++.+-+.-.|+||+|..|+.+|.++|+||....+.+..  +.+.=++-+   ++ +++++.+++|++
T Consensus         2 eG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v---D~-~~~~~vl~~I~~   65 (78)
T d1ygya3           2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL---DQ-DVPDDVRTAIAA   65 (78)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE---SS-CCCHHHHHHHHH
T ss_pred             CceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc---CC-CccHHHHHHHHc
Confidence            356788999999999999999999999999999998764  333333322   23 566555555554

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.60  E-value=7.2e-05  Score=55.22  Aligned_cols=47  Identities=26%  Similarity=0.281  Sum_probs=43.0

Q ss_pred             EEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEEe
Q 012814           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVID   83 (456)
Q Consensus        37 ~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~~   83 (456)
                      +|.|..+|+||-|++++++|.+.|+||.....+...++.+-+|.|.+
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN   47 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECC
Confidence            57899999999999999999999999999999988888888888854

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.50  E-value=0.00015  Score=53.17  Aligned_cols=45  Identities=18%  Similarity=0.304  Sum_probs=40.1

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEE
Q 012814          348 SLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYV  392 (456)
Q Consensus       348 ~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v  392 (456)
                      .+.|...||||.|++|+.+|++.|+||.+..+....+.+.-.|.+
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv   49 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV   49 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEE
Confidence            488999999999999999999999999999998888877767754

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.44  E-value=0.0004  Score=52.02  Aligned_cols=48  Identities=23%  Similarity=0.321  Sum_probs=40.0

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec--CCceeEEEEEE
Q 012814          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYV  174 (456)
Q Consensus       127 ~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T--~~~~~~d~F~v  174 (456)
                      +.+.+.+.-.|+||.++.|+.+|+++|+||...++.+  .++.+.-++.+
T Consensus         2 eG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v   51 (78)
T d1ygya3           2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL   51 (78)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE
T ss_pred             CceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc
Confidence            3567888899999999999999999999999999877  45556555554

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.41  E-value=0.00015  Score=53.21  Aligned_cols=47  Identities=21%  Similarity=0.186  Sum_probs=40.7

Q ss_pred             EEEEEEecCCcchHHHHHHHHhhCCceEEEEEEEEeCCEEEEEEEEE
Q 012814           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI   82 (456)
Q Consensus        36 ~~V~V~~~DrpGLl~~i~~vL~~~glnI~~A~i~t~~g~~~d~f~V~   82 (456)
                      -+++|+..||||.|++++++|+..|+||.+-.+....+..+-.+.|.
T Consensus         4 ~QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~   50 (70)
T d2f06a2           4 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS   50 (70)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEEC
Confidence            36899999999999999999999999999999887666666567664

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.36  E-value=0.00013  Score=54.63  Aligned_cols=48  Identities=15%  Similarity=0.359  Sum_probs=35.7

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCce--eEEEEEEEe
Q 012814          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRR--IACVLYVND  176 (456)
Q Consensus       129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~--~~d~F~v~~  176 (456)
                      .-|.|.+.||||+|++|+.+++++|+||......+ ..|.  ....+++.+
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~   52 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEI   52 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEE
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEc
Confidence            35889999999999999999999999999999887 3433  455666666

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.35  E-value=0.00014  Score=54.55  Aligned_cols=48  Identities=23%  Similarity=0.413  Sum_probs=34.8

Q ss_pred             EEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecC-ce--eeeEEEEEeC
Q 012814          348 SLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVG-EQ--AVNVFYVRDA  395 (456)
Q Consensus       348 ~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g-~~--~~d~F~v~d~  395 (456)
                      -|.|.+.||||+|++|+.+|+++|+||..+...+.. +.  ..-.|++.+.
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~   53 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIE   53 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEEC
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcC
Confidence            488999999999999999999999999999877642 22  4446667554

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.0011  Score=49.14  Aligned_cols=64  Identities=17%  Similarity=0.315  Sum_probs=47.8

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEe-cCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHH
Q 012814          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW-THNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI  199 (456)
Q Consensus       129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~-T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~  199 (456)
                      ..+.+...|+||+|++|++.|+..|+||.+..+. |.......+-.+..+       +++.++++...|.+.
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~-------~~~~i~qi~kQL~Kl   66 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG-------DEKVLEQIEKQLHKL   66 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES-------CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEEC-------CHHHHHHHHHHHhCC
Confidence            4688999999999999999999999999999988 444444444344442       245667777777653

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.12  E-value=0.0014  Score=48.77  Aligned_cols=63  Identities=17%  Similarity=0.403  Sum_probs=46.1

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCcee-EEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 012814          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRI-ACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (456)
Q Consensus       128 ~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~-~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~  198 (456)
                      ...|.+...|+||+|++|++.|+..|.||.+..+.. ..... .-++.+...        ++..+++...|.+
T Consensus         3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~--------~~~i~qi~kQl~K   67 (78)
T d2fgca2           3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD--------DKTIEQIEKQAYK   67 (78)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC--------TTHHHHHHHHHTT
T ss_pred             eEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEcC--------HHHHHHHHHHHhC
Confidence            468899999999999999999999999999999876 33333 344444442        2345666665543

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.09  E-value=0.0011  Score=49.22  Aligned_cols=64  Identities=17%  Similarity=0.316  Sum_probs=48.8

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCce-eEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHh
Q 012814          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRR-IACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (456)
Q Consensus       129 t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~-~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L  200 (456)
                      ..|.+...|+||.|++|++.|+..|+||.+..+.. .... ..-++.+...        ++.++++...|.+..
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~--------~~~i~qi~kQL~Klv   68 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP--------DEIVEQITKQLNKLI   68 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC--------HHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECC--------HHHHHHHHHHHhCCc
Confidence            47889999999999999999999999999999884 4433 4445555542        456777777776543

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.0024  Score=48.20  Aligned_cols=47  Identities=23%  Similarity=0.333  Sum_probs=39.2

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEE
Q 012814          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYV  174 (456)
Q Consensus       128 ~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v  174 (456)
                      ...|.+.-.|+||.|++|+.+|+++|+||.+....+.++....+..+
T Consensus        11 ~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i   57 (84)
T d1sc6a3          11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI   57 (84)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred             CeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEEEEE
Confidence            46778889999999999999999999999999998876655444444

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.04  E-value=0.00094  Score=49.77  Aligned_cols=66  Identities=15%  Similarity=0.300  Sum_probs=50.2

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHh
Q 012814          346 GLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHT  415 (456)
Q Consensus       346 ~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~  415 (456)
                      .+.|.+...|+||+|.+|+..|+..|+||++..+........-.+-+.-. |.   ++.++++..+|.+.
T Consensus         3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~-g~---~~~i~qi~kQl~Kl   68 (78)
T d2fgca2           3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVK-GD---DKTIEQIEKQAYKL   68 (78)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEE-EC---TTHHHHHHHHHTTS
T ss_pred             eEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEE-cC---HHHHHHHHHHHhCC
Confidence            35788999999999999999999999999999998776665544444222 32   24578888887764

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.0013  Score=48.78  Aligned_cols=65  Identities=18%  Similarity=0.365  Sum_probs=50.6

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHh
Q 012814          347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHT  415 (456)
Q Consensus       347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~  415 (456)
                      ..+.+...|+||+|++|+..|+..|+||++..+.-......-.|-+.-. |   +++.++++..+|.+.
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~-~---~~~~i~qi~kQL~Kl   66 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-G---DEKVLEQIEKQLHKL   66 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-S---CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEE-C---CHHHHHHHHHHHhCC
Confidence            3578889999999999999999999999999998655555545544322 3   346778888888775

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.88  E-value=0.0012  Score=49.04  Aligned_cols=66  Identities=15%  Similarity=0.323  Sum_probs=49.4

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHHHhh
Q 012814          347 LSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIGHTM  416 (456)
Q Consensus       347 ~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~~~~  416 (456)
                      ..+.+...|+||+|++|+..|+..|+||++..+........-.+-+.-. |   +++.++++..+|.+.+
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~-~---~~~~i~qi~kQL~Klv   68 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN-G---PDEIVEQITKQLNKLI   68 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE-E---CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEE-C---CHHHHHHHHHHHhCCc
Confidence            4578889999999999999999999999999998655443333333211 2   2467788888887753

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.012  Score=44.08  Aligned_cols=41  Identities=2%  Similarity=-0.014  Sum_probs=35.1

Q ss_pred             EEEEEEeeCchhHHHHHHHHHHhCCcEEEEEEEEecCCceE
Q 012814          269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHAS  309 (456)
Q Consensus       269 ~~v~V~~~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~  309 (456)
                      ..+.+.-+|+||.+++|+..|+++|+||.+....+.++..+
T Consensus        12 ~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~   52 (84)
T d1sc6a3          12 RRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGY   52 (84)
T ss_dssp             EEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEE
T ss_pred             eEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcE
Confidence            45677789999999999999999999999998888765443

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.22  E-value=0.0092  Score=44.45  Aligned_cols=61  Identities=16%  Similarity=0.202  Sum_probs=44.1

Q ss_pred             EEeCCCcchHHHHHHHHHHCCceEEEEEEeecCcee-eeEEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814          351 LCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQA-VNVFYVRDASGNPVDMKTIEALRKEIGH  414 (456)
Q Consensus       351 v~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~-~d~F~v~d~~g~~l~~~~~~~L~~~l~~  414 (456)
                      +...|+||-|+++-..|+++|||+.+.+..-...+. .=.||| |.+|.. ++ ..+.+-++|..
T Consensus         7 ~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~i-d~~g~~-~~-~~~~~l~~L~~   68 (80)
T d2qmwa2           7 TPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFV-QADSAI-TT-DIKKVIAILET   68 (80)
T ss_dssp             EESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEE-EESCCS-CH-HHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEE-EEecCC-cH-HHHHHHHHHHH
Confidence            345799999999999999999999999987666554 447888 445643 43 34444444444

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.49  E-value=0.009  Score=46.25  Aligned_cols=67  Identities=19%  Similarity=0.305  Sum_probs=50.0

Q ss_pred             CceEEEEEeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeee-EEEEEeCCCCCCChHHHHHHHHHHHH
Q 012814          345 EGLSLELCAKDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVN-VFYVRDASGNPVDMKTIEALRKEIGH  414 (456)
Q Consensus       345 ~~~~lev~~~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d-~F~v~d~~g~~l~~~~~~~L~~~l~~  414 (456)
                      ..|.|-+...|+||-|+++-..|+++|||+.+.+........+. .||| |.+|..  +..++.+-+.|..
T Consensus        15 ~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~i-d~eg~~--~~~i~~~l~~L~~   82 (97)
T d1phza1          15 GAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFT-YLDKRT--KPVLGSIIKSLRN   82 (97)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEE-CBCGGG--HHHHHHHHHHHHH
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEE-EcccCC--hHHHHHHHHHHHH
Confidence            35778888899999999999999999999999888766555444 7888 566752  3344555455544

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.82  E-value=0.19  Score=36.91  Aligned_cols=47  Identities=21%  Similarity=0.294  Sum_probs=38.5

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEeC
Q 012814          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDD  177 (456)
Q Consensus       131 i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~~  177 (456)
                      +-+...|+||-|+++-..|+++|+|+....... .+....=.||+.-.
T Consensus         5 ~i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~~   52 (80)
T d2qmwa2           5 LITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD   52 (80)
T ss_dssp             EEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES
T ss_pred             EEEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEe
Confidence            334456999999999999999999999998775 55556778999873

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.50  E-value=0.078  Score=40.67  Aligned_cols=53  Identities=8%  Similarity=0.102  Sum_probs=44.2

Q ss_pred             CCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEec-CCceeEEEEEEEe
Q 012814          124 SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVND  176 (456)
Q Consensus       124 ~~~~~t~i~v~~~DrpGLL~~I~~~l~~~gi~I~~a~i~T-~~~~~~d~F~v~~  176 (456)
                      ...+.|.|-+...|+||-|+++-..|+++|+|+....... .+....=.|||.-
T Consensus        12 ~~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~   65 (97)
T d1phza1          12 NQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYL   65 (97)
T ss_dssp             CSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECB
T ss_pred             CCCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEc
Confidence            3456788888899999999999999999999999888775 4555667899976

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=86.93  E-value=0.87  Score=31.90  Aligned_cols=60  Identities=8%  Similarity=0.211  Sum_probs=39.3

Q ss_pred             EEEEEe---CCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHH
Q 012814          348 SLELCA---KDRVGLLSEVTRILRENGLSVTRAGVSTVGEQAVNVFYVRDASGNPVDMKTIEALRKEIG  413 (456)
Q Consensus       348 ~lev~~---~DrpGlL~~It~~l~~~gi~I~~a~i~T~g~~~~d~F~v~d~~g~~l~~~~~~~L~~~l~  413 (456)
                      .|.+.|   .++||+..++..+|.+.|+||....-.+-.  ..=.|.|.+.+.    ++.+..|.++|.
T Consensus         3 ~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~Se--~~Is~~V~~~d~----~~Av~~Lh~~F~   65 (67)
T d2hmfa2           3 VISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSE--VNISFVIDEKDL----LNCVRKLHEKFI   65 (67)
T ss_dssp             EEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSCS--SEEEEEEEGGGH----HHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCcc--ceEEEEEeHHHH----HHHHHHHHHHHh
Confidence            466666   489999999999999999999876532221  223577754422    234455655553

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=84.56  E-value=2.4  Score=29.43  Aligned_cols=45  Identities=13%  Similarity=0.304  Sum_probs=34.5

Q ss_pred             EEEEEe---CCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEe
Q 012814          130 AIELIG---RDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (456)
Q Consensus       130 ~i~v~~---~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~  176 (456)
                      .+.+.|   .++||+.+++..+|++.|+||.-....+..  ..-.|.|..
T Consensus         3 ~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~Se--~~Is~~V~~   50 (67)
T d2hmfa2           3 VISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSE--VNISFVIDE   50 (67)
T ss_dssp             EEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSCS--SEEEEEEEG
T ss_pred             EEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCcc--ceEEEEEeH
Confidence            567776   589999999999999999999877655432  344566665

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=83.89  E-value=1.5  Score=33.17  Aligned_cols=46  Identities=11%  Similarity=0.040  Sum_probs=34.3

Q ss_pred             CeEEEEEEe---eCchhHHHHHHHHHHhCCcEEEEEEEEecCCceEEEEEE
Q 012814          267 GYSVVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQEYYI  314 (456)
Q Consensus       267 ~~~~v~V~~---~Dr~gll~~i~~~L~~~~l~I~~a~i~t~~g~~~d~f~V  314 (456)
                      +...|++.|   +++||+.+++..+|++.|+||.-....+.. .- -.|.|
T Consensus        14 nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se-~~-Isf~V   62 (100)
T d2hmfa3          14 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSE-TN-ISLVV   62 (100)
T ss_dssp             EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTT-CC-EEEEE
T ss_pred             CEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCc-ce-EEEEE
Confidence            457899988   799999999999999999999865433322 22 23666

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.67  E-value=0.99  Score=33.62  Aligned_cols=32  Identities=31%  Similarity=0.522  Sum_probs=28.5

Q ss_pred             eEEEEEeC---CCcchHHHHHHHHHHCCceEEEEE
Q 012814          347 LSLELCAK---DRVGLLSEVTRILRENGLSVTRAG  378 (456)
Q Consensus       347 ~~lev~~~---DrpGlL~~It~~l~~~gi~I~~a~  378 (456)
                      +.|.|.+.   ++||++++|..+|++.|+||....
T Consensus        14 a~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is   48 (91)
T d2cdqa2          14 TMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA   48 (91)
T ss_dssp             EEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEE
Confidence            56788764   999999999999999999999875

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.44  E-value=1  Score=33.58  Aligned_cols=36  Identities=14%  Similarity=0.362  Sum_probs=31.9

Q ss_pred             CceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEE
Q 012814          126 GDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEV  161 (456)
Q Consensus       126 ~~~t~i~v~~~---DrpGLL~~I~~~l~~~gi~I~~a~i  161 (456)
                      .+.+.|+|.+.   ++||++++|..+|+++|+||.-...
T Consensus        11 ~~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is~   49 (91)
T d2cdqa2          11 RNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVAT   49 (91)
T ss_dssp             EEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEEe
Confidence            45788999875   9999999999999999999998863

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=82.03  E-value=2.5  Score=31.86  Aligned_cols=64  Identities=17%  Similarity=0.179  Sum_probs=45.0

Q ss_pred             CceEEEEEEe---CCcccHHHHHHHHHHhCCceEEEEEEecCCceeEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHhc
Q 012814          126 GDHTAIELIG---RDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR  201 (456)
Q Consensus       126 ~~~t~i~v~~---~DrpGLL~~I~~~l~~~gi~I~~a~i~T~~~~~~d~F~v~~~~~g~~l~d~~~~~~l~~~L~~~L~  201 (456)
                      .+-..|++.|   +++||+.++|..+|++.|+||.-....+..  ..-.|.|...          ..++..+.|++.+.
T Consensus        13 ~nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se--~~Isf~V~~~----------d~~~a~~~L~~~f~   79 (100)
T d2hmfa3          13 KNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSE--TNISLVVSEE----------DVDKALKALKREFG   79 (100)
T ss_dssp             EEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTT--CCEEEEECST----------THHHHHHHHHHHHC
T ss_pred             CCEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCc--ceEEEEEeHH----------HHHHHHHHHHHHHH
Confidence            3577889988   699999999999999999999987655432  3344666441          23444555655553