Citrus Sinensis ID: 012817

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450------
Protein Sequence
MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLARKEK
Secondary Structure (PSIPRED)
cccEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHccccccccEEEEEEEccccccHHHHHHHHHHccccccEEEEcccccccccHHHHHHHHHHcccccEEEEEEEccccccccccccccccccccccccEEEEcccccEEEEEEccccccccccccHHHHccccEEEEcccccccEEEEEcHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccEEEEEcccccEEEEccHHHHHHHHHHHHcccccccccccccccccEEccccEEccccEEccccEEccccEEccccEEcccEEccccEEccccEEEccEEccccEEccccEEcccEEccccEEccccEEccEEEccccEEccccEEEccEEEcccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHccccEEEEEEEEcHHHHHHHHHcccccEEEEEEEEEccccccccHHHHHHHHHHHccccEEEEEcccEEcccHHHHHHHHHHccccEEEEEEEcccccccccccccccccccccHHccEEEEccccEEEEEEEcccccHHHEEEccEHcccccccccccccEccEEEEEcHHHHHHHHHccccccccHHHHHHHHHHHcccEEEEccccccccHccccccccccEEEEccccccccccHHHHHHHHHHHHcccccEEEEccccccccccccccccEEEccccEEccccEEcccEEEcccEEEcccEEEcccEEEcccEEEccccEEccccEEEEEEEcccEEEcccEEEEEEEEEccEEEcccEEEEEEEEEccEEEccEEEEEEEEEcccEEEcccEEEccEEEEcccc
Coil and Loop (DISEMBL)
MDFQVVVLaggtskklvplvskevpkallpvanrpVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVatvpedvgtAGALRAIAHHLTAKDVLVvsgdlvsdvppgavtaahRRHDAVVTAMICSvpvsglseagssgakdktkkpgryniigmdptKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKseilingapqgqqakengndkvSYRIlanastpsfhelyalgpngsapvrrthKCCVYIASNSKYCVRLNSIQAFMDINRDVIGeanhlsgynfsaqnniihpsaelgskttvgphcmlgegsqmgdkcsvkrsvigrhcrigsNVKVVNSVVMNHVtigdgcsiqgsvicsnAQLQERVAlkdcqvgqgyvvsagceykgeslarkek
Flexible Loop (DISEMBL)
mdfqvvvlaggtskklvplvskevpkallpvanRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVsglseagssgakdktkkpgryniigmdptKQFLLHIATgaelekdtriRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILingapqgqqakengNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGrhcrigsnvKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVvsagceykgeslarkek
Low Complexity Region (SEG)
MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKdvlvvsgdlvsdvPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSnvkvvnsvvmnhvTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLARKEK
Disordered region (IsUnstruct)
***QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVP*********************YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILIN****************SYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEY**********
Disordered Region (DISOPRED)
MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV****************KPGRYNIIGMDPTKQFLLHIAT*A******RIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLA****
Disordered Region (DISEMBL)
MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSG*************KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYK*********
Disordered Region (DISPRO)
*DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVS*************TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQ*AKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLARK**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLARKEK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	456	2.2.26 [Sep-21-2011]
Q54FQ8	440	Translation initiation fa	yes	no	0.894	0.927	0.290	3e-51
P70541	452	Translation initiation fa	yes	no	0.938	0.946	0.313	2e-50
Q4R6T3	452	Translation initiation fa	N/A	no	0.923	0.931	0.325	3e-49
Q9NR50	452	Translation initiation fa	yes	no	0.923	0.931	0.320	2e-47
A5PJI7	452	Translation initiation fa	yes	no	0.923	0.931	0.313	6e-46
P56288	458	Probable translation init	yes	no	0.901	0.897	0.271	4e-40
P32501	712	Translation initiation fa	yes	no	0.802	0.514	0.225	2e-18
P56287	678	Probable translation init	no	no	0.837	0.563	0.205	5e-18
P80361	404	Probable translation init	yes	no	0.817	0.923	0.241	1e-17
Q64350	716	Translation initiation fa	no	no	0.822	0.523	0.224	7e-16

>sp|Q54FQ8|EI2BG_DICDI Translation initiation factor eIF-2B subunit gamma OS=Dictyostelium discoideum GN=eif2b3 PE=3 SV=1

 Score =  203 bits (516), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 127/437 (29%), Positives = 234/437 (53%), Gaps = 29/437 (6%)

Query: 3   FQVVVLA---GGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIK---DLIVVV 56
           FQVV+LA      + KL P +   +P +LLP+ANRP++SY LE LE +  +   + +++V
Sbjct: 6   FQVVILATDKASGNSKLEP-IDATIPHSLLPIANRPLISYQLEFLEKAGFETKSEPVIIV 64

Query: 57  EGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLV-S 115
               +  ++  ++S  Y  ++ VE   + + + T   L  I   +  +  +V++ +LV  
Sbjct: 65  VNETSQEKIKQYVSEIYKGKIEVEFFVLKDQLATCEILYRIRDKIRLEYFMVLNANLVLE 124

Query: 116 DVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRY-NIIGMDPTKQF 174
           D     +   HR+ ++ +T ++   P   + + G    +  TK+   + + I ++   Q 
Sbjct: 125 DTFIRQMADLHRKEESSLTVLL-KPPTPKVEQKGKGATETSTKQDKLFTDYIALEEKSQK 183

Query: 175 LLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL-DQKDK---F 230
           ++ +    E+E+D    KS+L+    + I  +L D  +Y F+R VL  ++ DQK+K   F
Sbjct: 184 IVMMEPATEVEEDLNFNKSLLKYFPNVTIYTNLQDTQLYIFSRWVLDLIIEDQKEKYPLF 243

Query: 231 QSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTP--SFHELYAL 288
             +K+ ++PYL+  Q+ +       P    +  N N  +S + +++ ++P   F EL   
Sbjct: 244 FDIKKHLIPYLLSCQIPNIKRKRALPA---SAFNQNQTLS-QTMSSTTSPFDQFSEL--- 296

Query: 289 GPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVI-GEANHLSGYNFSAQNNI 347
               +A   +T KC  ++     YC+ +N+I+ +  INRD+  G+  +L     S +N  
Sbjct: 297 ----NAQKNKTIKCFAHLLKKEGYCMNVNTIKNYQQINRDIAKGDLQYLPNEPKSEKNFF 352

Query: 348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIG 407
           I P+A + + T VGP C++G  + +G KCSVK S+IG+HC+IG  V++ NS++M+HV I 
Sbjct: 353 IDPTANV-TITQVGPQCVIGTSTTLGAKCSVKFSIIGKHCKIGDGVRIENSIIMDHVIIE 411

Query: 408 DGCSIQGSVICSNAQLQ 424
           D C I  S+IC++  ++
Sbjct: 412 DRCVINSSIICNDVYIK 428

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.
Dictyostelium discoideum (taxid: 44689)

>sp|P70541|EI2BG_RAT Translation initiation factor eIF-2B subunit gamma OS=Rattus norvegicus GN=Eif2b3 PE=2 SV=2

 Score =  200 bits (508), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 145/462 (31%), Positives = 236/462 (51%), Gaps = 34/462 (7%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           M+FQ VV+A G   ++  L S  +PK LLPV N+P++ Y L  LE    +++IVV     
Sbjct: 1   MEFQAVVMAVGGGSRMTDLTSS-IPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTTKD- 58

Query: 61  AALRVGGWISAAYVDRLHVEVATVPE--DVGTAGALRAIAHHLTAKDVLVVSGDLVSDVP 118
               V   + A +  +L  ++  +P+  D+GTA +LR I   L   DVLV+  DL++DV 
Sbjct: 59  ----VQKALCAEFKMKLKPDIVCIPDEADMGTADSLRHIYPKLKT-DVLVLGCDLITDVA 113

Query: 119 PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHI 178
              V    R +DA +  ++        S     G K K K   + + IG+D T + LL +
Sbjct: 114 LHEVVDLFRAYDASLAMLMRK---GQESTEPVPGQKGKKKTVEQRDFIGVDSTGKRLLFM 170

Query: 179 ATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL 238
           A  A+L+++  I+ SIL+   ++  +  L+DAH+Y   + V+  +++ K    S++ +++
Sbjct: 171 ANEADLDEELVIKGSILQKHPRIHFQTGLVDAHLYCLKKYVVDFLMENK-SITSIRSELI 229

Query: 239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSA--PV 296
           PYLVR Q  S      + Q Q+ KE    K   + L   S         L P  +     
Sbjct: 230 PYLVRKQFSSA----SSQQRQEDKEEDLKKKEPKSLDIYSFIKKDNTLTLAPYDACWNAF 285

Query: 297 RRTH---------KCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNI 347
           RR           +C V+I      C R++++  +M+ NR V    + L       + ++
Sbjct: 286 RRDKWEDLSRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQVPKLLSVLC-----PEESM 339

Query: 348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIG 407
           IHPSA++ +K  +G   ++G  +Q+G+K S+KRSVIG  C I   V V N ++MN VT+ 
Sbjct: 340 IHPSAQIANKHLIGADSLIGSDTQVGEKSSIKRSVIGSSCVIRDRVTVTNCLLMNSVTVE 399

Query: 408 DGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGE 449
           +G SI GSVIC+NA ++    ++DC +G G  + A  +   E
Sbjct: 400 EGSSIHGSVICNNAVVEAGAEIRDCLIGSGQRIEAKAKRMNE 441

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Rattus norvegicus (taxid: 10116)

>sp|Q4R6T3|EI2BG_MACFA Translation initiation factor eIF-2B subunit gamma OS=Macaca fascicularis GN=EIF2B3 PE=2 SV=1

 Score =  196 bits (498), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 148/455 (32%), Positives = 236/455 (51%), Gaps = 34/455 (7%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           M+FQ VV+A G   ++  L S  +PK LLP  N+P++ Y L  LE    +++IVV     
Sbjct: 1   MEFQAVVMAVGGGSRMTDLTSS-IPKPLLPAGNKPLIWYPLNLLERVGFEEVIVV----- 54

Query: 61  AALRVGGWISAAYVDRLHVEVATVPED--VGTAGALRAIAHHLTAKDVLVVSGDLVSDVP 118
               V   + A +  ++  ++  +P+D  +GTA +LR +   L   DVLV+S DL++DV 
Sbjct: 55  TTRDVQKALCAEFKMKMKPDIVCIPDDADMGTADSLRYMYPKLKT-DVLVLSCDLITDVA 113

Query: 119 PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHI 178
              V    R +DA + AM+       L      G K K K   + + IG+D T + LL +
Sbjct: 114 LHEVVDLFRAYDASL-AMLMRKGQDSLEPV--PGQKGKKKAVEQRDFIGVDSTGKRLLFM 170

Query: 179 ATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL 238
           A  A+L+++  I+ SIL+   ++    DL+DAH+Y   + V+ + L +     S++ +++
Sbjct: 171 ANEADLDEELVIKGSILQKYPRIRFHTDLVDAHLYCLKKYVV-DFLMENGSITSIRSELI 229

Query: 239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVS------YRILANASTPSFHELYAL---- 288
           PYLVR Q  S      + QGQ+ KE    K        Y  L  A+T +     A     
Sbjct: 230 PYLVRKQFSSA----SSQQGQEEKEEDLKKKELKSLDIYSFLKEANTLNLAPYDACWNAC 285

Query: 289 -GPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNI 347
            G       R   +C V+I      C R++++  +M+ NR V      LS      +  +
Sbjct: 286 RGDRWEDLPRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQV---PKLLSA--LCPEEPL 339

Query: 348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIG 407
           +H SA++ SK  VG   ++G  +Q+G+K S+KRSVIG  C I   V + N ++MN VT+ 
Sbjct: 340 VHSSAQIVSKHLVGVDSLIGPETQIGEKSSIKRSVIGSSCLIKDRVTITNCLLMNSVTVE 399

Query: 408 DGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSA 442
           +G +IQGSVIC+NA +++   +KDC +G G  + A
Sbjct: 400 EGSNIQGSVICNNAVIEKGADIKDCLIGSGQRIEA 434

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Macaca fascicularis (taxid: 9541)

>sp|Q9NR50|EI2BG_HUMAN Translation initiation factor eIF-2B subunit gamma OS=Homo sapiens GN=EIF2B3 PE=1 SV=1

 Score =  190 bits (483), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 146/455 (32%), Positives = 235/455 (51%), Gaps = 34/455 (7%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           M+FQ VV+A G   ++  L S  +PK LLPV N+P++ Y L  LE    +++IVV     
Sbjct: 1   MEFQAVVMAVGGGSRMTDLTSS-IPKPLLPVGNKPLIWYPLNLLERVGFEEVIVV----- 54

Query: 61  AALRVGGWISAAYVDRLHVEVATVPED--VGTAGALRAIAHHLTAKDVLVVSGDLVSDVP 118
               V   + A +  ++  ++  +P+D  +GTA +LR I   L   DVLV+S DL++DV 
Sbjct: 55  TTRDVQKALCAEFKMKMKPDIVCIPDDADMGTADSLRYIYPKLKT-DVLVLSCDLITDVA 113

Query: 119 PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHI 178
              V    R +DA + AM+       +      G K K K   + + IG+D T + LL +
Sbjct: 114 LHEVVDLFRAYDASL-AMLMRKGQDSIEPV--PGQKGKKKAVEQRDFIGVDSTGKRLLFM 170

Query: 179 ATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL 238
           A  A+L+++  I+ SIL+   ++     L+DAH+Y   + ++ + L +     S++ +++
Sbjct: 171 ANEADLDEELVIKGSILQKHPRIRFHTGLVDAHLYCLKKYIV-DFLMENGSITSIRSELI 229

Query: 239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVS------YRILANASTPSFHELYAL---- 288
           PYLVR Q  S      + QGQ+ KE    K        Y  +  A+T +     A     
Sbjct: 230 PYLVRKQFSSA----SSQQGQEEKEEDLKKKELKSLDIYSFIKEANTLNLAPYDACWNAC 285

Query: 289 -GPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNI 347
            G       R   +C V+I      C R++++  +M+ NR V      LS      +   
Sbjct: 286 RGDRWEDLSRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQV---PKLLSA--LCPEEPP 339

Query: 348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIG 407
           +H SA++ SK  VG   ++G  +Q+G+K S+KRSVIG  C I   V + N ++MN VT+ 
Sbjct: 340 VHSSAQIVSKHLVGVDSLIGPETQIGEKSSIKRSVIGSSCLIKDRVTITNCLLMNSVTVE 399

Query: 408 DGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSA 442
           +G +IQGSVIC+NA +++   +KDC +G G  + A
Sbjct: 400 EGSNIQGSVICNNAVIEKGADIKDCLIGSGQRIEA 434

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Homo sapiens (taxid: 9606)

>sp|A5PJI7|EI2BG_BOVIN Translation initiation factor eIF-2B subunit gamma OS=Bos taurus GN=EIF2B3 PE=2 SV=1

 Score =  185 bits (470), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 143/456 (31%), Positives = 239/456 (52%), Gaps = 35/456 (7%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           M+FQ VV+A G   ++  L S  +PK LLPV N+P++ Y L  LE    +++IV+     
Sbjct: 1   MEFQAVVMAVGGGSRMTDLTS-SIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVITTK-- 57

Query: 61  AALRVGGWISAAYVD-RLHVEVATVPE--DVGTAGALRAIAHHLTAKDVLVVSGDLVSDV 117
               V   + A +   ++ +++  +P+  D+GTA +LR I   L   DVLV+S DL++DV
Sbjct: 58  ---DVQKALCADFNKMKMKLDIVCIPDEADMGTADSLRHIYQKLKT-DVLVLSCDLITDV 113

Query: 118 PPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLH 177
               V    R HDA + AM+       L      G K K K   + + +G+D T + LL 
Sbjct: 114 ALHEVVDLFRAHDASL-AMLMRKGQESLEPV--PGQKGKKKAVEQRDFVGVDSTGKRLLF 170

Query: 178 IATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDV 237
           +A  A+L+++  I+ SIL+   ++     L+DAH+Y   + V+  +++ K    S++ ++
Sbjct: 171 MANEADLDEELIIKGSILQKHPRIRFHTGLVDAHLYCLKKYVVDFLMENK-SITSIRSEL 229

Query: 238 LPYLVRSQLKSEILINGAPQGQQAKENGN--------DKVSYRILANASTPSFHEL---Y 286
           +PYLVR Q  S      + QGQ+ KE           D  S+   AN  T + ++     
Sbjct: 230 IPYLVRKQFSSA----SSQQGQEEKEEDLKKKELKSLDIYSFIKEANTLTLAPYDTCWNA 285

Query: 287 ALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNN 346
             G +     R   +C V+I      C R++++  +M+ NR V    + L       + +
Sbjct: 286 CRGDSWEGLSRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQV----SKLLPV-ICPEES 339

Query: 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI 406
           +IH SA++ SK  VG   ++G  +Q+G+K S+K SVIG  C I   V V N ++MN VT+
Sbjct: 340 LIHSSAQIVSKHMVGADSLIGPDTQVGEKSSIKHSVIGSSCVIRDRVTVTNCLLMNSVTV 399

Query: 407 GDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSA 442
            +G +IQ S+IC++A +++   +K+C +G G  + A
Sbjct: 400 EEGSNIQSSIICNDAVIEKGADIKNCLIGSGQRIEA 435

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Bos taurus (taxid: 9913)

>sp|P56288|EI2BG_SCHPO Probable translation initiation factor eIF-2B subunit gamma OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif223 PE=1 SV=2

 Score =  166 bits (420), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 125/461 (27%), Positives = 228/461 (49%), Gaps = 50/461 (10%)

Query: 1   MDFQVVVLAGGTSKKLVPLV-SKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV-VEG 58
           ++FQ VV AG     L PL  S  +PKALLP+ N+P+L Y L  LE +     I++ +E 
Sbjct: 37  IEFQAVVFAG-FGNSLYPLTGSDALPKALLPIGNKPMLHYPLYWLEAAGFTSAILICMEE 95

Query: 59  ADAALRVGGWISAAYVD--RLHVEVATVPEDV-GTAGALRAIAHHLTAKDVLVVSGDLVS 115
           A+A   +  W+ + Y    R+HVE  T+ +D   +A ALRA++H L   D + +S D + 
Sbjct: 96  AEA--HINAWLRSGYEGHMRIHVEAPTILDDSKSSADALRAVSH-LIKNDFVCLSCDSIV 152

Query: 116 DVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFL 175
            +PP       R  +   +A+    PV       S   +   K+     +IG++     L
Sbjct: 153 GLPPIYGLDKFRLDNP--SALAVYSPVLKYEHITSQSKEIDAKQ-----LIGIEEKTSRL 205

Query: 176 LHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQ 235
           L+  + A++  D   R S+L    ++ +  +L DAH++ F   V+ +++ +K+   S++ 
Sbjct: 206 LYAKSSADVGSDFTFRMSLLWKHPRVTLNTNLSDAHIFVFKHWVI-DLIREKESISSIRG 264

Query: 236 DVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAP 295
           D++PYLV+ Q +    +         +EN        I    S+P+  + Y  G +    
Sbjct: 265 DLIPYLVKCQYQKSFTV---------REN--------IQRFLSSPNNIDNYDGGLSS--- 304

Query: 296 VRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELG 355
             +  K    IA +   C R N++  + ++N+ +            + +  ++     + 
Sbjct: 305 --QEIKINALIAKDGIICSRANNLPNYFELNKCIA---------KLTPEQRLV--DVTVS 351

Query: 356 SKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGS 415
            +  VG  CM+ EG+ + D  ++K+S+IG++C IG  V V NS++M+++ + DG  ++  
Sbjct: 352 ERALVGADCMVNEGTTIKDNSNIKKSIIGKNCVIGKGVVVSNSILMDNIVVEDGVRLESC 411

Query: 416 VICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLARKEK 456
           ++ S AQ+  +  L++C++G  + V AG   +GE L   EK
Sbjct: 412 IVASGAQIGAKSKLRECEIGVDHRVEAGRIARGERLVDMEK 452

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P32501|EI2BE_YEAST Translation initiation factor eIF-2B subunit epsilon OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCD6 PE=1 SV=1

 Score = 94.4 bits (233), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 103/456 (22%), Positives = 193/456 (42%), Gaps = 90/456 (19%)

Query: 3   FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAA 62
            Q VVL      + +PL + + P+ LLP+AN P++ Y LE L  + + ++ ++   +  A
Sbjct: 27  LQAVVLTDSYETRFMPLTAVK-PRCLLPLANVPLIEYTLEFLAKAGVHEVFLIC--SSHA 83

Query: 63  LRVGGWISAAYVDR----LHVEVATVPEDVGTAGALRAIAHH-LTAKDVLVVSGDLVSDV 117
            ++  +I  +  +       +     PE   T   +R + +  +   D ++VSGD+++++
Sbjct: 84  NQINDYIENSKWNLPWSPFKITTIMSPEARCTGDVMRDLDNRGIITGDFILVSGDVLTNI 143

Query: 118 PPGAVTAAHRR---HDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQF 174
               +   H++    D    + +C      LS+A S+  K +T +P  + +        +
Sbjct: 144 DFSKMLEFHKKMHLQDKDHISTMC------LSKA-STYPKTRTIEPAAFVLDKSTSRCIY 196

Query: 175 LLHIATGAELEKDT-RIRKSILRAVGQMDIRADLMDAHMYAFNRSV---LQEVLDQKDKF 230
              +   +  EK + +I   +L  V +  IR DL+D  +      V    QE  D    +
Sbjct: 197 YQDLPLPSSREKTSIQIDPELLDNVDEFVIRNDLIDCRIDICTSHVPLIFQENFD----Y 252

Query: 231 QSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGP 290
           QSL+ D     V+  + S+IL      G+                               
Sbjct: 253 QSLRTD----FVKGVISSDIL------GKH------------------------------ 272

Query: 291 NGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIG--------EANHLSGYNFS 342
                        +Y     +Y VR+ S Q +  I++D +G        ++N      +S
Sbjct: 273 -------------IYAYLTDEYAVRVESWQTYDTISQDFLGRWCYPLVLDSNIQDDQTYS 319

Query: 343 AQNNIIHPSAE--LGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVV 400
            ++  I+   +  L     +G    +G G+++G+   ++ SVIGR+C+IG N+++ NS +
Sbjct: 320 YESRHIYKEKDVVLAQSCKIGKCTAIGSGTKIGEGTKIENSVIGRNCQIGENIRIKNSFI 379

Query: 401 MNHVTIGDGCSIQGSVICSNAQLQERVALKD-CQVG 435
            +   IG+   I  S+I SNA L   V L D C +G
Sbjct: 380 WDDCIIGNNSIIDHSLIASNATLGSNVRLNDGCIIG 415

Acts as a catalytic component of the translation initiation factor 2B (eIF2-B or GCD complex), which catalyzes the exchange of eukaryotic initiation factor 2 (eIF-2)-bound GDP for GTP and is regulated by phosphorylated eIF-2. It activates the synthesis of GCN4 in yeast under amino acid starvation conditions by suppressing the inhibitory effects of multiple AUG codons present in the leader of GCN4 mRNA. It may promote either repression or activation of GCN4 expression depending on amino acid availability. GCD6 and GCD7 repress GCN4 expression at the translational level by ensuring that ribosomes which have translated UORF1 will reinitiate at UORF2, -3, or -4 and thus fail to reach the GCN4 start site.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P56287|EI2BE_SCHPO Probable translation initiation factor eIF-2B subunit epsilon OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif225 PE=1 SV=1

 Score = 92.8 bits (229), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 97/473 (20%), Positives = 190/473 (40%), Gaps = 91/473 (19%)

Query: 3   FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAA 62
            Q +VL+   + +  PL + + P+ LLP+AN P++ Y  E L L+ ++++ V        
Sbjct: 18  LQAIVLSDSYNYRFRPL-TLDKPRCLLPLANTPLIEYTFEFLALAGVQEVYVFCCAHAGQ 76

Query: 63  LRVGGWISAAYVDRLHVEVATVPEDVGT---------AGALRAI-AHHLTAKDVLVVSGD 112
           +R        Y+++    + + P  V T           ALR + +  L   D ++VSGD
Sbjct: 77  IR-------EYIEKSKWNLPSSPFSVNTIVSRESLSVGDALRELDSKQLITSDFILVSGD 129

Query: 113 LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTK 172
           +VS+VP   V   HR+        I ++ V   S    + A+ ++      ++  +D   
Sbjct: 130 VVSNVPLNEVLKEHRKRREDDKNAIMTMVVREASPFHRTRARTES------SVFVIDKKT 183

Query: 173 QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQS 232
              +H       +    +   I     ++++R DL+D  +   +  V     +  D +Q 
Sbjct: 184 SQCVHYQANERGKHYVSMDPEIFNEHEELEVRNDLIDCQIDICSNDVPALFTENFD-YQD 242

Query: 233 LKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNG 292
           +++D +  ++ S      L+        AKEN                            
Sbjct: 243 IRKDFVYGVLTSD-----LLGKKIHCHVAKEN---------------------------- 269

Query: 293 SAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEA-------NHLSGYNFSAQN 345
                              Y  R+ S+Q +  I++DV+          ++L    FS Q 
Sbjct: 270 -------------------YAARVRSLQTYDAISKDVLSRWVYPFVPDSNLLNQTFSYQR 310

Query: 346 NIIHPSAE--LGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNH 403
           + I+   +  L     +    ++G  +++GD   V  ++IGR+C IGSN  + ++ +   
Sbjct: 311 HQIYKEEDVVLARSCIIKARTLIGAYTKVGDASVVANTIIGRNCTIGSNCSIDSAFLWED 370

Query: 404 VTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLARKEK 456
           V IGD C I  +++ ++ ++       +C +  G +V+AG      ++  K K
Sbjct: 371 VVIGDNCRIGKAILANSVKIG-----NNCSIEDGAIVAAGVVIGDNTIIEKNK 418

Subunit of the guanine nucleotide exchange factor for eIF-2.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P80361|EI2BG_CAEEL Probable translation initiation factor eIF-2B subunit gamma OS=Caenorhabditis elegans GN=ppp-1 PE=2 SV=3

 Score = 91.3 bits (225), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 107/443 (24%), Positives = 187/443 (42%), Gaps = 70/443 (15%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
           +++ +GG ++  +P++++ V K LLPV   P+  Y L  L  + I D+ + V        
Sbjct: 7   ILLCSGGGTR--MPVLTRHVQKCLLPVVGVPMFLYPLSSLLRTGITDIKIFVREVLQLTL 64

Query: 65  VGGWISAAYVDRL--HVEVATV-PEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGA 121
                 +  +++   H+E   V  ED GTA  L+   H    KD L+VS D +SD     
Sbjct: 65  EKEVKKSKLLEKYPAHIEYICVNQEDFGTADLLKN-HHSKITKDALIVSCDFISDASLIP 123

Query: 122 VTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATG 181
           +    R  ++ + A+I    V+    A + G+  K+KKP   +++ +  +   L  +   
Sbjct: 124 LVDFFRATNSTLVALIADTCVN----APAPGS--KSKKPKATDVMAIVESTGQLAFLCGD 177

Query: 182 AELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYL 241
            + +    + KS L+    + + +   D H+YA    VL   L +     S K D +P L
Sbjct: 178 DDFDAPLVMEKS-LKIFPSIKLTSKYNDCHVYAIRHKVLLN-LSKSKHISSFKADFVPLL 235

Query: 242 VRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHK 301
           +  Q + +  I                 +YR+      P  HE      NG         
Sbjct: 236 IDKQFEPDSDIKC--------------FAYRL------P--HE------NG--------- 258

Query: 302 CCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKT-TV 360
              ++ +++      N++ ++ ++N+ +      L  Y  + +N           KT  +
Sbjct: 259 ---FVTAHA------NTLGSYFEVNKAIQKSFTRLMEYRGNGKN--------FNYKTDKI 301

Query: 361 GPHCMLGEGSQMGDKCSV-KRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICS 419
             H    E S   DK SV KRS I  +CRIG   K+  S++   V IG+G SI  S+IC 
Sbjct: 302 AAHESRIEESAEIDKDSVIKRSFISDNCRIGEKTKLKESIIAKGVVIGNGASISNSIICD 361

Query: 420 NAQLQERVALKDCQVGQGYVVSA 442
             ++ E   + +C V +   V A
Sbjct: 362 GVEIGENADVTNCIVAKDQKVPA 384

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Caenorhabditis elegans (taxid: 6239)

>sp|Q64350|EI2BE_RAT Translation initiation factor eIF-2B subunit epsilon OS=Rattus norvegicus GN=Eif2b5 PE=1 SV=2

 Score = 85.5 bits (210), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 98/437 (22%), Positives = 169/437 (38%), Gaps = 62/437 (14%)

Query: 3   FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAA 62
            Q V++A    ++  P +SK+ P+ LLP+AN  ++ Y LE L  + +++  V      A 
Sbjct: 38  LQAVLVADSFDRRFFP-ISKDQPRVLLPLANVALIDYTLEFLTATGVQETFVFCCWKAAQ 96

Query: 63  ----LRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAI-AHHLTAKDVLVVSGDLVSDV 117
               L+   W     ++ + +  + +   +G    LR + A  L   D L++ GD+VS++
Sbjct: 97  IKEHLQKSKWCHPTSLNVVRIITSDLYRSLG--DVLRDVDAKALVRSDFLLIYGDVVSNI 154

Query: 118 PPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYN----IIGMDPTKQ 173
                   HR    +   +  SV      E+  S        P R +    ++ +D T  
Sbjct: 155 NISKALEEHRLRRKLEKNV--SVMTMVFKESSPS-------HPTRCHEDNVVLAVDSTTN 205

Query: 174 FLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSL 233
            +LH      L   +        ++  ++IR DL+D H+   +  V Q   D  D     
Sbjct: 206 RILHFQKTQGLRHFSFPLGLFQGSLDGVEIRYDLLDCHISICSPQVAQLFTDNFD----- 260

Query: 234 KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGS 293
                 Y  R      +L+N    G Q        +   + +         L+      +
Sbjct: 261 ------YQTRDDFVRGLLVNEEILGNQ--------IHLHVTSREYGARVSNLHMYSAVCA 306

Query: 294 APVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAE 353
             +RR             +   L     F D         +    Y  S  N    P   
Sbjct: 307 DVIRR-------------WVYPLTPEVNFTD---------SSTQSYTHSRHNIYRGPEVS 344

Query: 354 LGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ 413
           LG  + +  + +LG G+ +G  CS+  SVIG +C IG NV +  + +   V +  G  I 
Sbjct: 345 LGHGSVLEENVLLGAGTVVGSNCSITNSVIGPNCHIGDNVVLDQAYLWQGVRVAAGAQIH 404

Query: 414 GSVICSNAQLQERVALK 430
            S++C  A+++ERV LK
Sbjct: 405 QSLLCDRAEVKERVILK 421

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	456
224103999	458	predicted protein [Populus trichocarpa]	0.986	0.982	0.811	0.0
296082668	461	unnamed protein product [Vitis vinifera]	0.993	0.982	0.827	0.0
359494464	463	PREDICTED: translation initiation factor	0.993	0.978	0.827	0.0
356525249	459	PREDICTED: translation initiation factor	0.989	0.982	0.783	0.0
356512489	468	PREDICTED: translation initiation factor	0.995	0.970	0.758	0.0
449452670	461	PREDICTED: translation initiation factor	0.993	0.982	0.771	0.0
357518837	565	Translation initiation factor eIF-2B sub	0.982	0.792	0.771	0.0
224059672	508	predicted protein [Populus trichocarpa]	0.986	0.885	0.736	0.0
79328173	456	translation initiation factor eIF-2B gam	0.986	0.986	0.732	0.0
297812131	456	acyltransferase [Arabidopsis lyrata subs	0.986	0.986	0.732	0.0

>gi|224103999|ref|XP_002313277.1| predicted protein [Populus trichocarpa] gi|222849685|gb|EEE87232.1| predicted protein [Populus trichocarpa]

 Score =  773 bits (1997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/462 (81%), Positives = 414/462 (89%), Gaps = 12/462 (2%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           MDFQVVVLAGGT KKL+PLVSK+VPKALLPVANRPVLSYVLEQLELSN+KDLIVVVEG D
Sbjct: 1   MDFQVVVLAGGTCKKLLPLVSKDVPKALLPVANRPVLSYVLEQLELSNLKDLIVVVEGED 60

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
           AAL VGGWIS AYVDRLHVEVA VPEDVGTAGALRAIAHHLTA D+LVVSGDLVSD+PPG
Sbjct: 61  AALHVGGWISNAYVDRLHVEVAAVPEDVGTAGALRAIAHHLTANDILVVSGDLVSDIPPG 120

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
           A+ A HR+HDAVVT M+CS PVSG +E+GSSG KDK KKP R+NIIG+DP+KQFLLHIAT
Sbjct: 121 ALAAVHRQHDAVVTTMLCSAPVSGPTESGSSGGKDKIKKPRRHNIIGLDPSKQFLLHIAT 180

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
           GAE+EK+ RI+KSILRAV QM+IRADLMDAHMYAF RSVLQEVLD+KDKF+SLK+D+LPY
Sbjct: 181 GAEVEKEIRIQKSILRAVDQMEIRADLMDAHMYAFKRSVLQEVLDEKDKFRSLKEDMLPY 240

Query: 241 LVRSQLKSEILINGAPQGQQAKENGNDKVS--------YRILANASTPSFHELYALGPNG 292
           LVRSQ+KSE+L+NGAPQ +    NGN+KVS         RIL NASTPSFH+LYA   N 
Sbjct: 241 LVRSQMKSEVLLNGAPQAK----NGNEKVSSQNNQAVVSRILTNASTPSFHDLYASSNND 296

Query: 293 SAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSA 352
           S+ VRR HKCC YIAS S+YC RLNSIQAF DINRDVIG+A+HLSGY+FS+ NNIIHPSA
Sbjct: 297 SSLVRRIHKCCAYIASESRYCQRLNSIQAFSDINRDVIGDASHLSGYSFSSHNNIIHPSA 356

Query: 353 ELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI 412
           +LGS+TTVGPHCML EGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSV+MNHVTIGDGCSI
Sbjct: 357 QLGSRTTVGPHCMLWEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVIMNHVTIGDGCSI 416

Query: 413 QGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLARK 454
           QGSVICSNAQLQER  LKDCQVG G+VV+AG E+KGESLARK
Sbjct: 417 QGSVICSNAQLQERAVLKDCQVGAGFVVTAGSEHKGESLARK 458

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082668|emb|CBI21673.3| unnamed protein product [Vitis vinifera]

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/464 (82%), Positives = 415/464 (89%), Gaps = 11/464 (2%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLE LE SN+KDLIVVVEG D
Sbjct: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLELLEHSNLKDLIVVVEGQD 60

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
           AALRVGGWIS AYVDRLHVEVA VPEDVGTAGALRAIAHHLTA D+LVVSGDLV DV PG
Sbjct: 61  AALRVGGWISGAYVDRLHVEVAAVPEDVGTAGALRAIAHHLTANDILVVSGDLVCDVSPG 120

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
           AV AAHRRH A VTAM+CSVPVSG  E+GSS  KDKTKKPG  NIIG+DPTKQFLL+IAT
Sbjct: 121 AVAAAHRRHGAAVTAMLCSVPVSGPLESGSSSGKDKTKKPGCCNIIGLDPTKQFLLYIAT 180

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
           G E+E+D R++KSILRAVGQM+IRADLMDAH+YAF R+VLQEVLDQKD FQSL+QDVLPY
Sbjct: 181 GPEIERDIRVQKSILRAVGQMEIRADLMDAHLYAFKRAVLQEVLDQKDAFQSLQQDVLPY 240

Query: 241 LVRSQLKSEILINGAPQGQQAKENGNDKVS--------YRILANASTPSFHELYALGPNG 292
           LVRSQL+SE+ +NGAP     +ENG+DKV          ++LA  STPSFHELYA+GPNG
Sbjct: 241 LVRSQLRSELSLNGAP---HTEENGHDKVVPGINQVMLSQLLAKTSTPSFHELYAMGPNG 297

Query: 293 SAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSA 352
           SAPVRRTHKCCVYIAS  KYC RLNSIQAF DINRDVIGEA+HLSGY+FSAQNNIIHPSA
Sbjct: 298 SAPVRRTHKCCVYIASQDKYCARLNSIQAFSDINRDVIGEASHLSGYSFSAQNNIIHPSA 357

Query: 353 ELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI 412
           ELGSKTTVG +CMLGEGSQ+GDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI DGCSI
Sbjct: 358 ELGSKTTVGQNCMLGEGSQLGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTISDGCSI 417

Query: 413 QGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLARKEK 456
           QGSVICSNAQLQERV LKDCQVG G+VV++G EYKGE LA+KE+
Sbjct: 418 QGSVICSNAQLQERVVLKDCQVGAGFVVTSGSEYKGEFLAKKER 461

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494464|ref|XP_002266884.2| PREDICTED: translation initiation factor eIF-2B subunit gamma [Vitis vinifera]

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/464 (82%), Positives = 415/464 (89%), Gaps = 11/464 (2%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLE LE SN+KDLIVVVEG D
Sbjct: 3   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLELLEHSNLKDLIVVVEGQD 62

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
           AALRVGGWIS AYVDRLHVEVA VPEDVGTAGALRAIAHHLTA D+LVVSGDLV DV PG
Sbjct: 63  AALRVGGWISGAYVDRLHVEVAAVPEDVGTAGALRAIAHHLTANDILVVSGDLVCDVSPG 122

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
           AV AAHRRH A VTAM+CSVPVSG  E+GSS  KDKTKKPG  NIIG+DPTKQFLL+IAT
Sbjct: 123 AVAAAHRRHGAAVTAMLCSVPVSGPLESGSSSGKDKTKKPGCCNIIGLDPTKQFLLYIAT 182

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
           G E+E+D R++KSILRAVGQM+IRADLMDAH+YAF R+VLQEVLDQKD FQSL+QDVLPY
Sbjct: 183 GPEIERDIRVQKSILRAVGQMEIRADLMDAHLYAFKRAVLQEVLDQKDAFQSLQQDVLPY 242

Query: 241 LVRSQLKSEILINGAPQGQQAKENGNDKVS--------YRILANASTPSFHELYALGPNG 292
           LVRSQL+SE+ +NGAP     +ENG+DKV          ++LA  STPSFHELYA+GPNG
Sbjct: 243 LVRSQLRSELSLNGAP---HTEENGHDKVVPGINQVMLSQLLAKTSTPSFHELYAMGPNG 299

Query: 293 SAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSA 352
           SAPVRRTHKCCVYIAS  KYC RLNSIQAF DINRDVIGEA+HLSGY+FSAQNNIIHPSA
Sbjct: 300 SAPVRRTHKCCVYIASQDKYCARLNSIQAFSDINRDVIGEASHLSGYSFSAQNNIIHPSA 359

Query: 353 ELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI 412
           ELGSKTTVG +CMLGEGSQ+GDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI DGCSI
Sbjct: 360 ELGSKTTVGQNCMLGEGSQLGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTISDGCSI 419

Query: 413 QGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLARKEK 456
           QGSVICSNAQLQERV LKDCQVG G+VV++G EYKGE LA+KE+
Sbjct: 420 QGSVICSNAQLQERVVLKDCQVGAGFVVTSGSEYKGEFLAKKER 463

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525249|ref|XP_003531239.1| PREDICTED: translation initiation factor eIF-2B subunit gamma-like [Glycine max]

 Score =  738 bits (1905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/462 (78%), Positives = 400/462 (86%), Gaps = 11/462 (2%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           MDFQVVVL GG SKKL+PLVS+E+P ALLPVANRPVLSYVLE LELSN+KDLIVVVEG +
Sbjct: 1   MDFQVVVLGGGLSKKLLPLVSQELPNALLPVANRPVLSYVLEYLELSNLKDLIVVVEGEE 60

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
           A L VG WIS AY DRLHVEVA VPEDVGTAGA+RAI+HHLTAKD+LVVSGDLV+DVP G
Sbjct: 61  AVLHVGAWISGAYADRLHVEVAAVPEDVGTAGAIRAISHHLTAKDILVVSGDLVTDVPLG 120

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
           AV A HRRHDAVVTAM+CS PVSG SE+ SSG KDK KKPGRY++IG+DPTKQFL+HIAT
Sbjct: 121 AVAATHRRHDAVVTAMLCSAPVSGPSESVSSGGKDKIKKPGRYDLIGLDPTKQFLVHIAT 180

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
           GAE+EKD RI+KS+L AVGQ++IRADLMDAH+YAF RSVLQEVLDQK  F SLK DVLPY
Sbjct: 181 GAEVEKDLRIQKSMLPAVGQIEIRADLMDAHLYAFKRSVLQEVLDQKSAFHSLKHDVLPY 240

Query: 241 LVRSQLKSEILINGAPQGQQAKENGNDKV--------SYRILANASTPSFHELYALGPNG 292
           LVRSQLKSE+L+NG P   QA+ENG +KV          +ILANAS P FH   ALGP+G
Sbjct: 241 LVRSQLKSEVLLNGMP---QAEENGTEKVISQSNQQMLSQILANASEPIFHLRNALGPHG 297

Query: 293 SAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSA 352
           S   RRTHKCCVYIA +SKYC RLNSIQA+ DINRDV GEA+HLSGY+FSAQNNIIHPSA
Sbjct: 298 STSDRRTHKCCVYIAGSSKYCARLNSIQAYSDINRDVTGEASHLSGYSFSAQNNIIHPSA 357

Query: 353 ELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI 412
           ELG+KTTVGPHC+LGEGSQMGDKCSVKRSVIGRHCRIG NVKVVNSVVMNHVTIG+ CSI
Sbjct: 358 ELGAKTTVGPHCILGEGSQMGDKCSVKRSVIGRHCRIGPNVKVVNSVVMNHVTIGESCSI 417

Query: 413 QGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLARK 454
           QGS+ICSN QLQER  LKDCQVG G+VV+AG E KGE LA+K
Sbjct: 418 QGSIICSNVQLQERAILKDCQVGAGFVVTAGSECKGEVLAKK 459

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512489|ref|XP_003524951.1| PREDICTED: translation initiation factor eIF-2B subunit gamma-like [Glycine max]

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/468 (75%), Positives = 398/468 (85%), Gaps = 14/468 (2%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           MDFQVVVL GG SKKL+PLVS+E+P ALLP+ANRPVLSYVLE LELSN+KDLIVVVEG +
Sbjct: 1   MDFQVVVLGGGVSKKLIPLVSQELPNALLPLANRPVLSYVLEYLELSNLKDLIVVVEGEE 60

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
           AAL VG WIS AY DRLHVEVA VPEDVGTAGA+RAI+HHLTAKD+LVVSGDLV+DVP G
Sbjct: 61  AALHVGAWISGAYADRLHVEVAAVPEDVGTAGAIRAISHHLTAKDILVVSGDLVTDVPLG 120

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
           AV A HRRHDAVVTAM+CS PVSG  E+ SSG KDKTKKPGRY++IG+DPTKQFL+HIAT
Sbjct: 121 AVAATHRRHDAVVTAMLCSAPVSGPLESVSSGGKDKTKKPGRYDLIGLDPTKQFLVHIAT 180

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
           GAE+EKD RI+KS+L AVGQ++IRADLMDAH+YAF RSVLQEVLDQK  F SLK DVLPY
Sbjct: 181 GAEVEKDLRIQKSMLPAVGQIEIRADLMDAHLYAFKRSVLQEVLDQKSAFHSLKHDVLPY 240

Query: 241 LVRSQLKSEILINGAPQGQQAK-----ENGNDKVSYRILANASTPSFHELYALGPNGSAP 295
           LVRSQLKSE+L+NG PQ ++ +        N ++  +ILANAS P+FH  +ALGP GS  
Sbjct: 241 LVRSQLKSEVLLNGIPQAEENRTEKVISQSNQQMLSQILANASEPTFHLRHALGPYGSTF 300

Query: 296 VRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELG 355
            RRTHKCCVYIA +SKYC RLNSIQA+ DINRDVIGEA+ LSGY+FS  NNIIHPSAELG
Sbjct: 301 DRRTHKCCVYIAGSSKYCARLNSIQAYTDINRDVIGEASRLSGYSFSTLNNIIHPSAELG 360

Query: 356 SKTT---------VGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI 406
           +KT          VGPHC+LGEGSQMGDKCSVKRSVIGRHCRIG+NVKVVNSVVMNHVTI
Sbjct: 361 AKTPLSISGRELFVGPHCILGEGSQMGDKCSVKRSVIGRHCRIGANVKVVNSVVMNHVTI 420

Query: 407 GDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLARK 454
           G+ CSIQGSVICSN QLQER  LKDCQVG G+VV+AG E KGE LA+K
Sbjct: 421 GESCSIQGSVICSNVQLQERAVLKDCQVGAGFVVTAGSECKGEVLAKK 468

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452670|ref|XP_004144082.1| PREDICTED: translation initiation factor eIF-2B subunit gamma-like [Cucumis sativus] gi|449493530|ref|XP_004159334.1| PREDICTED: translation initiation factor eIF-2B subunit gamma-like [Cucumis sativus]

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/464 (77%), Positives = 406/464 (87%), Gaps = 11/464 (2%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           MDFQVVVLAGGTSK LVPLVSKE+PKALLPVANRPVLSYVLE LELSN+KD+IVV EG D
Sbjct: 1   MDFQVVVLAGGTSKNLVPLVSKELPKALLPVANRPVLSYVLELLELSNLKDIIVVAEGED 60

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
            ALR+G WIS AY +RL VEV +VPEDVGTAGALRAI+ HLTA D+LVVSGDLVSDVPPG
Sbjct: 61  VALRIGSWISGAYDERLRVEVTSVPEDVGTAGALRAISRHLTANDILVVSGDLVSDVPPG 120

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
           AV A HRR+ AVVTAM+CSVPVSG SE+GS+G KDKTKK   +NI+G+DPTKQFLL+IA+
Sbjct: 121 AVAATHRRNGAVVTAMLCSVPVSGSSESGSAGGKDKTKKAVIHNIVGLDPTKQFLLYIAS 180

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
           GAE+EKD +I+KSILRAVGQMDIRADLMDA+MYAF RS LQ+VLDQKD F+SL+QDVLPY
Sbjct: 181 GAEIEKDYKIQKSILRAVGQMDIRADLMDAYMYAFKRSALQKVLDQKDTFRSLRQDVLPY 240

Query: 241 LVRSQLKSEILINGAPQGQQAKENGNDKVS--------YRILANASTPSFHELYALGPNG 292
           LVRSQL+SE+L+NG P   + +ENG +KV          +IL+N+S  SFH+LYA G +G
Sbjct: 241 LVRSQLRSEVLLNGTP---RTEENGLEKVGSHKIQVLLSQILSNSSATSFHDLYASGADG 297

Query: 293 SAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSA 352
           S PVR+THKCCVYI  +S YC RL SIQ++ DINRDVIGEA+HLSGY+FSAQNNIIHPSA
Sbjct: 298 SIPVRKTHKCCVYIPPSSNYCARLFSIQSYSDINRDVIGEASHLSGYSFSAQNNIIHPSA 357

Query: 353 ELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI 412
           +LGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVK+ NSVVM+HVTI DGCSI
Sbjct: 358 QLGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIADGCSI 417

Query: 413 QGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLARKEK 456
           QGSVICSN QLQER  L+DCQVG G+VV+A CEYKGE+LARKEK
Sbjct: 418 QGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGEALARKEK 461

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518837|ref|XP_003629707.1| Translation initiation factor eIF-2B subunit gamma [Medicago truncatula] gi|355523729|gb|AET04183.1| Translation initiation factor eIF-2B subunit gamma [Medicago truncatula]

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/459 (77%), Positives = 395/459 (86%), Gaps = 11/459 (2%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           MDFQVVVLAGG SKKL+PLVS E+P ALLPVANRPVLSYV+E LELSN+KDLIVVVEG D
Sbjct: 1   MDFQVVVLAGGVSKKLLPLVSHELPNALLPVANRPVLSYVVELLELSNLKDLIVVVEGKD 60

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
            AL VG WIS AY DRLHVEVA VPEDVGTAGA+RAIA HL AKD+L+VSGDLVSDVP G
Sbjct: 61  TALNVGAWISGAYADRLHVEVAAVPEDVGTAGAIRAIARHLYAKDILIVSGDLVSDVPIG 120

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
           AV A HRRHDAVVTA++C+ PVSG  E+ SSG KDK KKPGRY++IG+DPTKQFLLHIAT
Sbjct: 121 AVAATHRRHDAVVTALLCNTPVSGPLESVSSGGKDKAKKPGRYDLIGLDPTKQFLLHIAT 180

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
           GAE+EKD RI+KSILR+VGQ++IRADLMDAH+YAF RSVL EVLDQ  +F SLK DVLPY
Sbjct: 181 GAEVEKDLRIQKSILRSVGQVEIRADLMDAHLYAFKRSVLLEVLDQNGEFHSLKHDVLPY 240

Query: 241 LVRSQLKSEILINGAPQGQQAKENGNDKV--------SYRILANASTPSFHELYALGPNG 292
           LVRSQLKSE+L+NG P   QA+ENG +KV          +ILANAS P+FH  + L  NG
Sbjct: 241 LVRSQLKSEVLLNGTP---QAEENGTEKVISQSNQQMLSQILANASEPTFHLRHELSTNG 297

Query: 293 SAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSA 352
           S  VRRTHKCCVYIA ++KYC RLNS+QA+ DINRDVIGEA+HLSGY+FS+ NNII P+A
Sbjct: 298 SDSVRRTHKCCVYIAGSNKYCARLNSLQAYNDINRDVIGEASHLSGYSFSSHNNIIDPTA 357

Query: 353 ELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI 412
           ELG+KTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIG+NVKVVNSVVMNHVTIGDGCSI
Sbjct: 358 ELGAKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGANVKVVNSVVMNHVTIGDGCSI 417

Query: 413 QGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESL 451
           QGSVICSN QLQER  LKDCQVG GY+V+AG + KGE L
Sbjct: 418 QGSVICSNVQLQERATLKDCQVGAGYMVTAGSDCKGEGL 456

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059672|ref|XP_002299963.1| predicted protein [Populus trichocarpa] gi|222847221|gb|EEE84768.1| predicted protein [Populus trichocarpa]

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/512 (73%), Positives = 414/512 (80%), Gaps = 62/512 (12%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           MDFQVVVLAGGTSKKL+PLVSKEVPKALLPVANRPVLSYVLEQLELSN+KDLIVVVEG D
Sbjct: 1   MDFQVVVLAGGTSKKLLPLVSKEVPKALLPVANRPVLSYVLEQLELSNLKDLIVVVEGED 60

Query: 61  AALRVGGWISAAYVDRLHVE-------------------------------------VAT 83
           AA+ VGGWIS AYVDRLHVE                                     VA 
Sbjct: 61  AAIHVGGWISNAYVDRLHVEQQNGNKHRVHICSVKSCNLGFEKLMPCKIPKCYITLQVAA 120

Query: 84  VPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVS 143
           V EDVGTAGALRAIAHHLTA D+LVVSGDLV DVPPGA+ AAHR+H+AVVT M+C  PVS
Sbjct: 121 VHEDVGTAGALRAIAHHLTANDILVVSGDLVFDVPPGALAAAHRKHNAVVTTMLCPAPVS 180

Query: 144 GLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDI 203
           G +E+GSSG KDK KKP RYNIIG+DP+KQFLLHIATGAE+EK+ RI+KSILRAVGQM+I
Sbjct: 181 GPTESGSSGGKDKIKKPRRYNIIGLDPSKQFLLHIATGAEVEKEIRIQKSILRAVGQMEI 240

Query: 204 RADLMDAHMYAFNR-------------SVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEI 250
           RADLMDAHMYAF R             SVLQEVLD+KD+FQSLK+DVLPYLVRSQLKSE+
Sbjct: 241 RADLMDAHMYAFKRCSLSSPSLSISFRSVLQEVLDEKDEFQSLKEDVLPYLVRSQLKSEL 300

Query: 251 LINGAPQGQQAKENGNDKVSYR--------ILANASTPSFHELYALGPNGSAPVRRTHKC 302
           L NG PQ   A+E+GN+KV  +        I+ANASTPSFHEL + G +GS  VRR HKC
Sbjct: 301 LFNGVPQ---AEESGNEKVGSQNNQAVVSQIMANASTPSFHELSS-GNSGSTHVRRIHKC 356

Query: 303 CVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGP 362
           C YIAS S+YC RLNSIQAF DINRDVIG+A+HLSGY+FS+ NNIIHPSA+LGS+TTVGP
Sbjct: 357 CAYIASESRYCQRLNSIQAFSDINRDVIGDASHLSGYSFSSHNNIIHPSAQLGSRTTVGP 416

Query: 363 HCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQ 422
           HCML EGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQ
Sbjct: 417 HCMLWEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQ 476

Query: 423 LQERVALKDCQVGQGYVVSAGCEYKGESLARK 454
           LQER  LKDCQVG G+VV+AG E+KGESLARK
Sbjct: 477 LQERAVLKDCQVGAGFVVTAGSEHKGESLARK 508

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79328173|ref|NP_001031908.1| translation initiation factor eIF-2B gamma subunit [Arabidopsis thaliana] gi|98961849|gb|ABF59254.1| unknown protein [Arabidopsis thaliana] gi|332005333|gb|AED92716.1| translation initiation factor eIF-2B gamma subunit [Arabidopsis thaliana]

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/460 (73%), Positives = 389/460 (84%), Gaps = 10/460 (2%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           MDFQVV+LAGG S  LVPLV+KEVPKALLPVANRPVLSYVL+ LE SN+KDLIVVVEG D
Sbjct: 1   MDFQVVILAGGFSSYLVPLVAKEVPKALLPVANRPVLSYVLDLLESSNLKDLIVVVEGED 60

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
           AAL+VGGWIS+A VDRLHVEVA V E+VGTAGALRAIAHHLTAKD+L+VSGD+VSD+PPG
Sbjct: 61  AALKVGGWISSACVDRLHVEVAAVAENVGTAGALRAIAHHLTAKDILIVSGDIVSDIPPG 120

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
           AV A HRRHDA VT M+C+ PVSG SE+G SG KDKTKKP   +IIG+D  KQFLL+IA 
Sbjct: 121 AVAATHRRHDAAVTVMLCAQPVSGPSESGGSGGKDKTKKPACDDIIGLDSLKQFLLYIAK 180

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
           G E++KDTR++KSIL A G+M+IR+DLMD+H+YAF R+VLQEVLDQK  F+SLKQDVLPY
Sbjct: 181 GTEIKKDTRVKKSILCAAGKMEIRSDLMDSHIYAFKRAVLQEVLDQKPAFRSLKQDVLPY 240

Query: 241 LVRSQLKSEILINGA------PQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSA 294
           LVR+QL+S++  + +          +     N+ V  +IL+NAS PSFH++Y  G     
Sbjct: 241 LVRTQLRSDVFSDQSNVEENGNGNGKNNMQNNEVVLSQILSNASMPSFHQVYESGLG--- 297

Query: 295 PVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAEL 354
             R+THKCCVYIA  SKY VRLNSIQAFMD+NRDVIGE+NHLSGY+FSA +NI+HPSAEL
Sbjct: 298 -TRKTHKCCVYIADESKYFVRLNSIQAFMDVNRDVIGESNHLSGYSFSAHHNIVHPSAEL 356

Query: 355 GSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQG 414
           GSKTTVGPHCMLGEGSQ+GDKCSVKRSVIGRHCRIGSNVK+VNSVVM+H TIGDGCSIQG
Sbjct: 357 GSKTTVGPHCMLGEGSQVGDKCSVKRSVIGRHCRIGSNVKIVNSVVMDHATIGDGCSIQG 416

Query: 415 SVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLARK 454
           SVICSNAQLQERV L+DCQV  GYVV AG E+KGE+ ARK
Sbjct: 417 SVICSNAQLQERVTLRDCQVEAGYVVCAGSEHKGETFARK 456

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812131|ref|XP_002873949.1| acyltransferase [Arabidopsis lyrata subsp. lyrata] gi|297319786|gb|EFH50208.1| acyltransferase [Arabidopsis lyrata subsp. lyrata]

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/460 (73%), Positives = 389/460 (84%), Gaps = 10/460 (2%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           MDFQVV+LAGG S  LVPLVSKEVPKALLPVANRPVLSYVL+ LE +N+KDLIVVVEG D
Sbjct: 1   MDFQVVILAGGFSSNLVPLVSKEVPKALLPVANRPVLSYVLDLLESNNLKDLIVVVEGED 60

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
           AAL+VGGWIS+A VDRLHVEVA V E+VGTAGALRAIAHHLTAKD+L+VSGD+VSD+PPG
Sbjct: 61  AALKVGGWISSACVDRLHVEVAAVAENVGTAGALRAIAHHLTAKDILIVSGDIVSDIPPG 120

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
           AV A HRRHDA VT M+C+ PVSG SE+G SG KDKTKKP   +IIG+D  KQFLL+IA 
Sbjct: 121 AVAATHRRHDAAVTVMLCAQPVSGPSESGGSGGKDKTKKPACDDIIGLDSLKQFLLYIAK 180

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
           GAE++KDTR++KSIL A G+++IR+DLMD+H+YAF RSVLQEVLDQK  F+SLK+DVLPY
Sbjct: 181 GAEIKKDTRVKKSILCAAGKIEIRSDLMDSHIYAFKRSVLQEVLDQKPAFRSLKEDVLPY 240

Query: 241 LVRSQLKSEILIN------GAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSA 294
           LVR+QL+SEI  +            +     N+ V  +IL+NAS PSFH++Y  G +   
Sbjct: 241 LVRTQLRSEIFSDQNNVEENGNGNGKNNMQNNEVVLSQILSNASLPSFHQVYESGLDS-- 298

Query: 295 PVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAEL 354
             R+T+KCCVYIA  SK+ VRLNSIQAFMD+NRDVIG+ANHLSGY+FSA +NI+HPSAEL
Sbjct: 299 --RKTNKCCVYIADESKFFVRLNSIQAFMDVNRDVIGDANHLSGYSFSAHHNIVHPSAEL 356

Query: 355 GSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQG 414
           GSKTTVGPHCMLGEGSQ+GDKCSVKRSVIGRHCRIGSNVK+VNSVVM+H TIGDGCSIQG
Sbjct: 357 GSKTTVGPHCMLGEGSQVGDKCSVKRSVIGRHCRIGSNVKIVNSVVMDHATIGDGCSIQG 416

Query: 415 SVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLARK 454
           SVICSNAQLQERV L+DCQV  GYVV AG E KGE+ ARK
Sbjct: 417 SVICSNAQLQERVTLRDCQVEAGYVVCAGSEQKGETFARK 456

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	456
TAIR|locus:1009023495	456	AT5G19485 [Arabidopsis thalian	0.984	0.984	0.698	6.2e-165
UNIPROTKB|F1P4Z9	437	EIF2B3 "Uncharacterized protei	0.910	0.949	0.293	2.2e-41
DICTYBASE|DDB_G0290693	440	eif2b3 "eukaryotic translation	0.896	0.929	0.270	2.8e-41
UNIPROTKB|Q4R6T3	452	EIF2B3 "Translation initiation	0.953	0.962	0.289	3.6e-41
UNIPROTKB|Q9NR50	452	EIF2B3 "Translation initiation	0.953	0.962	0.285	6.8e-40
RGD|620821	452	Eif2b3 "eukaryotic translation	0.953	0.962	0.285	8.7e-40
UNIPROTKB|P70541	452	Eif2b3 "Translation initiation	0.953	0.962	0.285	8.7e-40
UNIPROTKB|A5PJI7	452	EIF2B3 "Translation initiation	0.925	0.933	0.279	6.1e-39
UNIPROTKB|F1NBJ8	418	EIF2B3 "Uncharacterized protei	0.883	0.964	0.290	3.4e-38
UNIPROTKB|E2RBJ1	452	EIF2B3 "Uncharacterized protei	0.953	0.962	0.268	1.9e-37

TAIR|locus:1009023495 AT5G19485 [Arabidopsis thaliana (taxid:3702)]

 Score = 1605 (570.0 bits), Expect = 6.2e-165, P = 6.2e-165
 Identities = 322/461 (69%), Positives = 367/461 (79%)

Query:     1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
             MDFQVV+LAGG S  LVPLV+KEVPKALLPVANRPVLSYVL+ LE SN+KDLIVVVEG D
Sbjct:     1 MDFQVVILAGGFSSYLVPLVAKEVPKALLPVANRPVLSYVLDLLESSNLKDLIVVVEGED 60

Query:    61 AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKXXXXXXXXXXXXXPPG 120
             AAL+VGGWIS+A VDRLHVEVA V E+VGTAGALRAIAHHLTAK             PPG
Sbjct:    61 AALKVGGWISSACVDRLHVEVAAVAENVGTAGALRAIAHHLTAKDILIVSGDIVSDIPPG 120

Query:   121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
             AV A HRRHDA VT M+C+ PVSG SE+G SG KDKTKKP   +IIG+D  KQFLL+IA 
Sbjct:   121 AVAATHRRHDAAVTVMLCAQPVSGPSESGGSGGKDKTKKPACDDIIGLDSLKQFLLYIAK 180

Query:   181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
             G E++KDTR++KSIL A G+M+IR+DLMD+H+YAF R+VLQEVLDQK  F+SLKQDVLPY
Sbjct:   181 GTEIKKDTRVKKSILCAAGKMEIRSDLMDSHIYAFKRAVLQEVLDQKPAFRSLKQDVLPY 240

Query:   241 LVRSQLKSEILI-------NGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGS 293
             LVR+QL+S++         NG   G+   +N N+ V  +IL+NAS PSFH++Y  G    
Sbjct:   241 LVRTQLRSDVFSDQSNVEENGNGNGKNNMQN-NEVVLSQILSNASMPSFHQVYESGLG-- 297

Query:   294 APVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAE 353
                R+THKCCVYIA  SKY VRLNSIQAFMD+NRDVIGE+NHLSGY+FSA +NI+HPSAE
Sbjct:   298 --TRKTHKCCVYIADESKYFVRLNSIQAFMDVNRDVIGESNHLSGYSFSAHHNIVHPSAE 355

Query:   354 LGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSXXXXXXXXXXXXXTIGDGCSIQ 413
             LGSKTTVGPHCMLGEGSQ+GDKCSVKRSVIGRHCRIGS             TIGDGCSIQ
Sbjct:   356 LGSKTTVGPHCMLGEGSQVGDKCSVKRSVIGRHCRIGSNVKIVNSVVMDHATIGDGCSIQ 415

Query:   414 GSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLARK 454
             GSVICSNAQLQERV L+DCQV  GYVV AG E+KGE+ ARK
Sbjct:   416 GSVICSNAQLQERVTLRDCQVEAGYVVCAGSEHKGETFARK 456

GO:0005737 "cytoplasm" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

UNIPROTKB|F1P4Z9 EIF2B3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
 Identities = 131/447 (29%), Positives = 213/447 (47%)

Query:     1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
             M+FQ VV+A G   ++  L S  +PK LLPV NRP+L Y L  LE +  +++IV+     
Sbjct:     1 MEFQAVVMAAGGGSRMTDLTSS-IPKPLLPVGNRPLLWYPLNLLERAGFEEVIVITRK-- 57

Query:    61 AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKXXXXXXXXXXXXXPPG 120
                 +   +S     +L     +   D+GTA +LR I H                     
Sbjct:    58 ---EIQKMLSLDTKMKLDFVYISDNVDMGTADSLRHI-HQKIKTDVLVLSCDLITDVDLY 113

Query:   121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
              V    R HDA ++ ++   P    +E  + G K K K   + + IG+D T + LL +A 
Sbjct:   114 KVVDLFRTHDATLSMLMKKAPEP--TEV-APGQKGKKKPVEQRDFIGVDDTGKRLLFMAN 170

Query:   181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
              A+L+++  I++SIL+   +M IR  LMDAH+Y   + V+  +++ +    SL+ +++P+
Sbjct:   171 EADLDEELVIKRSILQKHPRMHIRTGLMDAHLYCLKKYVVDFLVENRT-ITSLRSELIPH 229

Query:   241 LVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANAS-TPSFHELYALGPNGSA----- 294
             LVR Q  S   +     G   KE G  K     L   S     + L    P+ S      
Sbjct:   230 LVRKQFSSPTSLQ---HGLDNKEEGRKKKEQASLDIYSFIKEDNSLLKPAPDNSCWNDHR 286

Query:   295 -PVRRT-H----KCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNII 348
               +  T H    +C V+I      C R+N++  +++ NR V      L   N   +  ++
Sbjct:   287 GDMNETLHEGKVRCYVHIMKEG-LCCRVNTLALYIEANRQV---PKLL--LNLGLEEPLV 340

Query:   349 HPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSXXXXXXXXXXXXXTIGD 408
             H +A++  +  VG   ++G  +Q+G+K S+K S+IG  C I               TI +
Sbjct:   341 HGTAQITDRGMVGSDSIIGSSTQIGEKTSIKHSIIGSACTIKDKVKITNCIIMNSVTIEE 400

Query:   409 GCSIQGSVICSNAQLQERVALKDCQVG 435
             GC +QGSVIC+NA +++   +KDC +G
Sbjct:   401 GCCLQGSVICNNAVIEKGADIKDCLIG 427

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=IEA

GO:0014003 "oligodendrocyte development" evidence=IEA

GO:0051716 "cellular response to stimulus" evidence=IEA

DICTYBASE|DDB_G0290693 eif2b3 "eukaryotic translation initiation factor 2B, subunit 3 gamma" [Dictyostelium discoideum (taxid:44689)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 118/436 (27%), Positives = 216/436 (49%)

Query:     3 FQVVVLA----GGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIK---DLIVV 55
             FQVV+LA     G SK L P +   +P +LLP+ANRP++SY LE LE +  +   + +++
Sbjct:     6 FQVVILATDKASGNSK-LEP-IDATIPHSLLPIANRPLISYQLEFLEKAGFETKSEPVII 63

Query:    56 VEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKXXXXXXXXXXX 115
             V    +  ++  ++S  Y  ++ VE   + + + T   L  I   +  +           
Sbjct:    64 VVNETSQEKIKQYVSEIYKGKIEVEFFVLKDQLATCEILYRIRDKIRLEYFMVLNANLVL 123

Query:   116 XXP-PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRY-NIIGMDPTKQ 173
                    +   HR+ ++ +T ++   P   + + G    +  TK+   + + I ++   Q
Sbjct:   124 EDTFIRQMADLHRKEESSLTVLL-KPPTPKVEQKGKGATETSTKQDKLFTDYIALEEKSQ 182

Query:   174 FLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL-DQKDK--- 229
              ++ +    E+E+D    KS+L+    + I  +L D  +Y F+R VL  ++ DQK+K   
Sbjct:   183 KIVMMEPATEVEEDLNFNKSLLKYFPNVTIYTNLQDTQLYIFSRWVLDLIIEDQKEKYPL 242

Query:   230 FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALG 289
             F  +K+ ++PYL+  Q+ +       P    +  N N  +S + +++ ++P F +   L 
Sbjct:   243 FFDIKKHLIPYLLSCQIPNIKRKRALPA---SAFNQNQTLS-QTMSSTTSP-FDQFSEL- 296

Query:   290 PNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVI-GEANHLSGYNFSAQNNII 348
                +A   +T KC  ++     YC+ +N+I+ +  INRD+  G+  +L     S +N  I
Sbjct:   297 ---NAQKNKTIKCFAHLLKKEGYCMNVNTIKNYQQINRDIAKGDLQYLPNEPKSEKNFFI 353

Query:   349 HPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSXXXXXXXXXXXXXTIGD 408
              P+A + + T VGP C++G  + +G KCSVK S+IG+HC+IG               I D
Sbjct:   354 DPTANV-TITQVGPQCVIGTSTTLGAKCSVKFSIIGKHCKIGDGVRIENSIIMDHVIIED 412

Query:   409 GCSIQGSVICSNAQLQ 424
              C I  S+IC++  ++
Sbjct:   413 RCVINSSIICNDVYIK 428

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006413 "translational initiation" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|Q4R6T3 EIF2B3 "Translation initiation factor eIF-2B subunit gamma" [Macaca fascicularis (taxid:9541)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 136/469 (28%), Positives = 222/469 (47%)

Query:     1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
             M+FQ VV+A G   ++  L S  +PK LLP  N+P++ Y L  LE    +++IVV    D
Sbjct:     1 MEFQAVVMAVGGGSRMTDLTSS-IPKPLLPAGNKPLIWYPLNLLERVGFEEVIVVTT-RD 58

Query:    61 AALRVGGWISAAYVDRLHVEVATVPED--VGTAGALRAIAHHLTAKXXXXXXXXXXXXXP 118
                 V   + A +  ++  ++  +P+D  +GTA +LR +   L                 
Sbjct:    59 ----VQKALCAEFKMKMKPDIVCIPDDADMGTADSLRYMYPKLKTDVLVLSCDLITDVAL 114

Query:   119 PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHI 178
                V    R +DA + AM+       L      G K K K   + + IG+D T + LL +
Sbjct:   115 HEVVDL-FRAYDASL-AMLMRKGQDSLEPV--PGQKGKKKAVEQRDFIGVDSTGKRLLFM 170

Query:   179 ATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL 238
             A  A+L+++  I+ SIL+   ++    DL+DAH+Y   + V+ + L +     S++ +++
Sbjct:   171 ANEADLDEELVIKGSILQKYPRIRFHTDLVDAHLYCLKKYVV-DFLMENGSITSIRSELI 229

Query:   239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVS------YRILANASTPSFHELYAL---- 288
             PYLVR Q  S      + QGQ+ KE    K        Y  L  A+T +     A     
Sbjct:   230 PYLVRKQFSSA----SSQQGQEEKEEDLKKKELKSLDIYSFLKEANTLNLAPYDACWNAC 285

Query:   289 -GPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNI 347
              G       R   +C V+I      C R++++  +M+ NR V      LS      +  +
Sbjct:   286 RGDRWEDLPRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQV---PKLLSA--LCPEEPL 339

Query:   348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSXXXXXXXXXXXXXTIG 407
             +H SA++ SK  VG   ++G  +Q+G+K S+KRSVIG  C I               T+ 
Sbjct:   340 VHSSAQIVSKHLVGVDSLIGPETQIGEKSSIKRSVIGSSCLIKDRVTITNCLLMNSVTVE 399

Query:   408 DGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLARKEK 456
             +G +IQGSVIC+NA +++   +KDC +G G  + A  +   E +   ++
Sbjct:   400 EGSNIQGSVICNNAVIEKGADIKDCLIGSGQRIEAKAKRVNEVIVGSDQ 448

GO:0005737 "cytoplasm" evidence=ISS

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0014003 "oligodendrocyte development" evidence=ISS

GO:0051716 "cellular response to stimulus" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

UNIPROTKB|Q9NR50 EIF2B3 "Translation initiation factor eIF-2B subunit gamma" [Homo sapiens (taxid:9606)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 134/469 (28%), Positives = 221/469 (47%)

Query:     1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
             M+FQ VV+A G   ++  L S  +PK LLPV N+P++ Y L  LE    +++IVV    D
Sbjct:     1 MEFQAVVMAVGGGSRMTDLTSS-IPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTT-RD 58

Query:    61 AALRVGGWISAAYVDRLHVEVATVPED--VGTAGALRAIAHHLTAKXXXXXXXXXXXXXP 118
                 V   + A +  ++  ++  +P+D  +GTA +LR I   L                 
Sbjct:    59 ----VQKALCAEFKMKMKPDIVCIPDDADMGTADSLRYIYPKLKTDVLVLSCDLITDVAL 114

Query:   119 PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHI 178
                V    R +DA + AM+       +      G K K K   + + IG+D T + LL +
Sbjct:   115 HEVVDL-FRAYDASL-AMLMRKGQDSIEPV--PGQKGKKKAVEQRDFIGVDSTGKRLLFM 170

Query:   179 ATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL 238
             A  A+L+++  I+ SIL+   ++     L+DAH+Y   + ++ + L +     S++ +++
Sbjct:   171 ANEADLDEELVIKGSILQKHPRIRFHTGLVDAHLYCLKKYIV-DFLMENGSITSIRSELI 229

Query:   239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVS------YRILANASTPSFHELYAL---- 288
             PYLVR Q  S      + QGQ+ KE    K        Y  +  A+T +     A     
Sbjct:   230 PYLVRKQFSSA----SSQQGQEEKEEDLKKKELKSLDIYSFIKEANTLNLAPYDACWNAC 285

Query:   289 -GPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNI 347
              G       R   +C V+I      C R++++  +M+ NR V      LS      +   
Sbjct:   286 RGDRWEDLSRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQV---PKLLSA--LCPEEPP 339

Query:   348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSXXXXXXXXXXXXXTIG 407
             +H SA++ SK  VG   ++G  +Q+G+K S+KRSVIG  C I               T+ 
Sbjct:   340 VHSSAQIVSKHLVGVDSLIGPETQIGEKSSIKRSVIGSSCLIKDRVTITNCLLMNSVTVE 399

Query:   408 DGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLARKEK 456
             +G +IQGSVIC+NA +++   +KDC +G G  + A  +   E +   ++
Sbjct:   400 EGSNIQGSVICNNAVIEKGADIKDCLIGSGQRIEAKAKRVNEVIVGNDQ 448

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IDA

GO:0006413 "translational initiation" evidence=IDA;TAS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=IDA

GO:0009408 "response to heat" evidence=ISS;TAS

GO:0014003 "oligodendrocyte development" evidence=IMP

GO:0032057 "negative regulation of translational initiation in response to stress" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=IDA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IDA;IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0051716 "cellular response to stimulus" evidence=IDA

GO:0009749 "response to glucose stimulus" evidence=ISS

GO:0043434 "response to peptide hormone stimulus" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

RGD|620821 Eif2b3 "eukaryotic translation initiation factor 2B, subunit 3" [Rattus norvegicus (taxid:10116)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 134/469 (28%), Positives = 223/469 (47%)

Query:     1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
             M+FQ VV+A G   ++  L S  +PK LLPV N+P++ Y L  LE    +++IVV    D
Sbjct:     1 MEFQAVVMAVGGGSRMTDLTSS-IPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTT-KD 58

Query:    61 AALRVGGWISAAYVDRLHVEVATVPE--DVGTAGALRAIAHHLTAKXXXXXXXXXXXXXP 118
                 V   + A +  +L  ++  +P+  D+GTA +LR I   L                 
Sbjct:    59 ----VQKALCAEFKMKLKPDIVCIPDEADMGTADSLRHIYPKLKTDVLVLGCDLITDVAL 114

Query:   119 PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHI 178
                V    R +DA +  ++     S     G  G K KT +  + + IG+D T + LL +
Sbjct:   115 HEVVDL-FRAYDASLAMLMRKGQESTEPVPGQKGKK-KTVE--QRDFIGVDSTGKRLLFM 170

Query:   179 ATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL 238
             A  A+L+++  I+ SIL+   ++  +  L+DAH+Y   + V+  +++ K    S++ +++
Sbjct:   171 ANEADLDEELVIKGSILQKHPRIHFQTGLVDAHLYCLKKYVVDFLMENKS-ITSIRSELI 229

Query:   239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSA--PV 296
             PYLVR Q  S      + Q Q+ KE    K   + L   S         L P  +     
Sbjct:   230 PYLVRKQFSSA----SSQQRQEDKEEDLKKKEPKSLDIYSFIKKDNTLTLAPYDACWNAF 285

Query:   297 RRTH---------KCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNI 347
             RR           +C V+I      C R++++  +M+ NR V      LS      + ++
Sbjct:   286 RRDKWEDLSRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQV---PKLLSV--LCPEESM 339

Query:   348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSXXXXXXXXXXXXXTIG 407
             IHPSA++ +K  +G   ++G  +Q+G+K S+KRSVIG  C I               T+ 
Sbjct:   340 IHPSAQIANKHLIGADSLIGSDTQVGEKSSIKRSVIGSSCVIRDRVTVTNCLLMNSVTVE 399

Query:   408 DGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLARKEK 456
             +G SI GSVIC+NA ++    ++DC +G G  + A  +   E +   ++
Sbjct:   400 EGSSIHGSVICNNAVVEAGAEIRDCLIGSGQRIEAKAKRMNEVIVGNDQ 448

GO:0003743 "translation initiation factor activity" evidence=ISO;ISS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISO;IGI;ISS;IDA

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISO;ISS;IDA;IPI

GO:0006412 "translation" evidence=TAS

GO:0006413 "translational initiation" evidence=ISO;ISS

GO:0006417 "regulation of translation" evidence=IMP

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISO;ISS

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009408 "response to heat" evidence=IDA

GO:0009749 "response to glucose stimulus" evidence=IDA

GO:0014003 "oligodendrocyte development" evidence=ISO;ISS

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0032057 "negative regulation of translational initiation in response to stress" evidence=IMP

GO:0043434 "response to peptide hormone stimulus" evidence=IDA

GO:0051716 "cellular response to stimulus" evidence=ISO;ISS

UNIPROTKB|P70541 Eif2b3 "Translation initiation factor eIF-2B subunit gamma" [Rattus norvegicus (taxid:10116)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 134/469 (28%), Positives = 223/469 (47%)

Query:     1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
             M+FQ VV+A G   ++  L S  +PK LLPV N+P++ Y L  LE    +++IVV    D
Sbjct:     1 MEFQAVVMAVGGGSRMTDLTSS-IPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTT-KD 58

Query:    61 AALRVGGWISAAYVDRLHVEVATVPE--DVGTAGALRAIAHHLTAKXXXXXXXXXXXXXP 118
                 V   + A +  +L  ++  +P+  D+GTA +LR I   L                 
Sbjct:    59 ----VQKALCAEFKMKLKPDIVCIPDEADMGTADSLRHIYPKLKTDVLVLGCDLITDVAL 114

Query:   119 PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHI 178
                V    R +DA +  ++     S     G  G K KT +  + + IG+D T + LL +
Sbjct:   115 HEVVDL-FRAYDASLAMLMRKGQESTEPVPGQKGKK-KTVE--QRDFIGVDSTGKRLLFM 170

Query:   179 ATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL 238
             A  A+L+++  I+ SIL+   ++  +  L+DAH+Y   + V+  +++ K    S++ +++
Sbjct:   171 ANEADLDEELVIKGSILQKHPRIHFQTGLVDAHLYCLKKYVVDFLMENKS-ITSIRSELI 229

Query:   239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSA--PV 296
             PYLVR Q  S      + Q Q+ KE    K   + L   S         L P  +     
Sbjct:   230 PYLVRKQFSSA----SSQQRQEDKEEDLKKKEPKSLDIYSFIKKDNTLTLAPYDACWNAF 285

Query:   297 RRTH---------KCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNI 347
             RR           +C V+I      C R++++  +M+ NR V      LS      + ++
Sbjct:   286 RRDKWEDLSRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQV---PKLLSV--LCPEESM 339

Query:   348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSXXXXXXXXXXXXXTIG 407
             IHPSA++ +K  +G   ++G  +Q+G+K S+KRSVIG  C I               T+ 
Sbjct:   340 IHPSAQIANKHLIGADSLIGSDTQVGEKSSIKRSVIGSSCVIRDRVTVTNCLLMNSVTVE 399

Query:   408 DGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLARKEK 456
             +G SI GSVIC+NA ++    ++DC +G G  + A  +   E +   ++
Sbjct:   400 EGSSIHGSVICNNAVVEAGAEIRDCLIGSGQRIEAKAKRMNEVIVGNDQ 448

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

UNIPROTKB|A5PJI7 EIF2B3 "Translation initiation factor eIF-2B subunit gamma" [Bos taurus (taxid:9913)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 127/455 (27%), Positives = 218/455 (47%)

Query:     1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
             M+FQ VV+A G   ++  L S  +PK LLPV N+P++ Y L  LE    +++IV+    D
Sbjct:     1 MEFQAVVMAVGGGSRMTDLTSS-IPKPLLPVGNKPLIWYPLNLLERVGFEEVIVITT-KD 58

Query:    61 AALRVGGWISAAYVDRLHVEVATVPE--DVGTAGALRAIAHHLTAKXXXXXXXXXXXXXP 118
                 +    +     ++ +++  +P+  D+GTA +LR I   L                 
Sbjct:    59 VQKALCADFNKM---KMKLDIVCIPDEADMGTADSLRHIYQKLKTDVLVLSCDLITDVAL 115

Query:   119 PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHI 178
                V    R HDA + AM+       L      G K K K   + + +G+D T + LL +
Sbjct:   116 HEVVDL-FRAHDASL-AMLMRKGQESLEPV--PGQKGKKKAVEQRDFVGVDSTGKRLLFM 171

Query:   179 ATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL 238
             A  A+L+++  I+ SIL+   ++     L+DAH+Y   + V+  +++ K    S++ +++
Sbjct:   172 ANEADLDEELIIKGSILQKHPRIRFHTGLVDAHLYCLKKYVVDFLMENKS-ITSIRSELI 230

Query:   239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRIL--------ANASTPSFHELY---A 287
             PYLVR Q  S      + QGQ+ KE    K   + L        AN  T + ++      
Sbjct:   231 PYLVRKQFSSA----SSQQGQEEKEEDLKKKELKSLDIYSFIKEANTLTLAPYDTCWNAC 286

Query:   288 LGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNI 347
              G +     R   +C V+I      C R++++  +M+ NR V    + L       + ++
Sbjct:   287 RGDSWEGLSRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQV----SKLLPV-ICPEESL 340

Query:   348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSXXXXXXXXXXXXXTIG 407
             IH SA++ SK  VG   ++G  +Q+G+K S+K SVIG  C I               T+ 
Sbjct:   341 IHSSAQIVSKHMVGADSLIGPDTQVGEKSSIKHSVIGSSCVIRDRVTVTNCLLMNSVTVE 400

Query:   408 DGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSA 442
             +G +IQ S+IC++A +++   +K+C +G G  + A
Sbjct:   401 EGSNIQSSIICNDAVIEKGADIKNCLIGSGQRIEA 435

GO:0006413 "translational initiation" evidence=ISS

GO:0014003 "oligodendrocyte development" evidence=ISS

GO:0051716 "cellular response to stimulus" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISS

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

UNIPROTKB|F1NBJ8 EIF2B3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 126/433 (29%), Positives = 200/433 (46%)

Query:     1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
             M+FQ VV+A G   ++  L S  +PK LLPV NRP+L Y L  LE +  +++IV+     
Sbjct:     3 MEFQAVVMAAGGGSRMTDLTSS-IPKPLLPVGNRPLLWYPLNLLERAGFEEVIVITRK-- 59

Query:    61 AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKXXXXXXXXXXXXXPPG 120
                 +   +S     +L     +   D+GTA +LR I H                     
Sbjct:    60 ---EIQKMLSLDTKMKLDFVYISDNVDMGTADSLRHI-HQKIKTDVLVLSCDLITDVDLY 115

Query:   121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
              V    R HDA ++ ++   P       G  G K       R + IG+D T + LL +A 
Sbjct:   116 KVVDLFRTHDATLSMLMKKAPEPTEVAPGQKGKKKPASVEQR-DFIGVDDTGKRLLFMAN 174

Query:   181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
              A+L+++  I++SIL+   +M IR  LMDAH+Y   + V+  +++ +    SL+ +++P+
Sbjct:   175 EADLDEELVIKRSILQKHPRMHIRTGLMDAHLYCLKKYVVDFLVENRT-ITSLRSELIPH 233

Query:   241 LVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANAS-TPSFHELYALGPNGSA----- 294
             LVR Q  S   +     G   KE G  K     L   S     + L    P+ S      
Sbjct:   234 LVRKQFSSPTSLQ---HGLDNKEEGRKKKEQASLDIYSFIKEDNSLLKPAPDNSCWNDHR 290

Query:   295 -PVRRT-H----KCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNII 348
               +  T H    +C V+I      C R+N++  +++ NR V      L   N   +  ++
Sbjct:   291 GDMNETLHEGKVRCYVHIMKEG-LCCRVNTLALYIEANRQV---PKLL--LNLGLEEPLV 344

Query:   349 HPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSXXXXXXXXXXXXXTIGD 408
             H +A++  +  VG   ++G  +Q+G+K S+K S+IG  C I               TI +
Sbjct:   345 HGTAQITDRGMVGSDSIIGSSTQIGEKTSIKHSIIGSACTIKDKVKITNCIIMNSVTIEE 404

Query:   409 GCSIQGSVICSNA 421
             GC +QGSVIC+NA
Sbjct:   405 GCCLQGSVICNNA 417

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

UNIPROTKB|E2RBJ1 EIF2B3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 126/469 (26%), Positives = 220/469 (46%)

Query:     1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
             M+FQ VV+  G   ++  L S  +P  LLPV N+P++      LE    +++IV+    D
Sbjct:     1 MEFQAVVMPVGRGSRMTDLTSS-IPTLLLPVGNKPLIWDPSNLLERVGFEEVIVITT-RD 58

Query:    61 AALRVGGWISAAYVDRLHVEVATVPE--DVGTAGALRAIAHHLTAKXXXXXXXXXXXXXP 118
                 + G     +  ++ +++  +P+  D GTA +LR I   L                 
Sbjct:    59 VQKALSG----EFKMKMKLDIVCIPDEADKGTADSLRQIYPKLKTDVLVLSCDLITDVAL 114

Query:   119 PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHI 178
                V    R HDA + AM+       L +    G K K K   + + IG+D T + LL +
Sbjct:   115 HEVVDL-FRAHDASL-AMLMRKGQDDLEQV--PGQKGKKKAVEQRDFIGVDSTGKRLLFM 170

Query:   179 ATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL 238
             A  A+L+++  I+ SIL+   ++     L+DAH+Y   + V+  +++ K    S++ +++
Sbjct:   171 ANEADLDEELVIKGSILQKHPRIHFHTGLVDAHLYCLKKYVVDFLMENKS-ITSIRSELI 229

Query:   239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILA--------NASTPSFHEL---YA 287
             PYL+R Q  S      + QGQ  KE    K   + L         NA T + ++      
Sbjct:   230 PYLIRKQFSSA----SSQQGQDEKEEDLKKKELKSLDIFSFIKEDNALTFAPYDACWNVC 285

Query:   288 LGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNI 347
              G       +   +C V+I      C R++++  +M+ NR V      LS      + ++
Sbjct:   286 RGERWEDLSKSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQV---PKLLSV--LCPEESL 339

Query:   348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSXXXXXXXXXXXXXTIG 407
             IH SA++ +K  +G   ++G  +Q+G+K S+K SV+G  C I               T+ 
Sbjct:   340 IHSSAQIVNKHLIGVDSLIGPDTQVGEKSSIKHSVVGSSCVIRDRVTITSCLLMNSVTVE 399

Query:   408 DGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLARKEK 456
             +G +IQGSVIC+NA +++ V +K+C +G G  + A  +   E +   ++
Sbjct:   400 EGSNIQGSVICNNAVIEKGVDIKNCLIGNGQRIEAKAKRVNEVIVGSDQ 448

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9NR50	EI2BG_HUMAN	No assigned EC number	0.3208	0.9232	0.9314	yes	no
A5PJI7	EI2BG_BOVIN	No assigned EC number	0.3135	0.9232	0.9314	yes	no
P70541	EI2BG_RAT	No assigned EC number	0.3138	0.9385	0.9469	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1	0.691
3rd Layer	2.7.7	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_IX0932	hypothetical protein (458 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0022009302	hypothetical protein (343 aa)					•	•			0.820
	estExt_fgenesh4_pm.C_LG_VIII0284	hypothetical protein (343 aa)					•	•			0.819
	eugene3.00030772	hypothetical protein (464 aa)						•			0.816
	estExt_Genewise1_v1.C_290097	hypothetical protein (465 aa)						•			0.816
	estExt_fgenesh4_pm.C_LG_XIII0470	SubName- Full=Putative uncharacterized protein; (271 aa)					•	•			0.810
	fgenesh4_pg.C_scaffold_1866000002	annotation not avaliable (150 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	456
cd04198	214	cd04198, eIF-2B_gamma_N, The N-terminal domain of	1e-64
cd02507	216	cd02507, eIF-2B_gamma_N_like, The N-terminal of eI	1e-49
cd04652	81	cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit,	2e-34
COG1208	358	COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph	2e-32
cd04181	217	cd04181, NTP_transferase, NTP_transferases catalyz	5e-25
cd03356	79	cd03356, LbH_G1P_AT_C_like, Left-handed parallel b	7e-21
cd05787	79	cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit	7e-20
cd06915	223	cd06915, NTP_transferase_WcbM_like, WcbM_like is a	1e-18
cd04197	217	cd04197, eIF-2B_epsilon_N, The N-terminal domain o	7e-16
pfam00483	247	pfam00483, NTP_transferase, Nucleotidyl transferas	5e-14
COG1208	358	COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph	3e-13
TIGR03992	393	TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph	1e-12
cd06422	221	cd06422, NTP_transferase_like_1, NTP_transferase_l	2e-11
COG1209	286	COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cel	4e-11
PRK00892	343	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] gluco	7e-11
cd06425	233	cd06425, M1P_guanylylT_B_like_N, N-terminal domain	8e-11
cd04651	104	cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenyly	3e-10
cd06426	220	cd06426, NTP_transferase_like_2, NTP_trnasferase_l	4e-10
TIGR02091	361	TIGR02091, glgC, glucose-1-phosphate adenylyltrans	5e-10
cd03356	79	cd03356, LbH_G1P_AT_C_like, Left-handed parallel b	3e-09
cd04189	236	cd04189, G1P_TT_long, G1P_TT_long represents the l	6e-09
COG0448	393	COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb	8e-09
cd03352	205	cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl	1e-08
cd06428	257	cd06428, M1P_guanylylT_A_like_N, N-terminal domain	1e-08
TIGR01173	451	TIGR01173, glmU, UDP-N-acetylglucosamine diphospho	2e-08
COG1207	460	COG1207, GlmU, N-acetylglucosamine-1-phosphate uri	4e-08
PRK05293	380	PRK05293, glgC, glucose-1-phosphate adenylyltransf	4e-08
TIGR03570	193	TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sia	5e-08
cd03360	197	cd03360, LbH_AT_putative, Putative Acyltransferase	5e-08
PRK05289	262	PRK05289, PRK05289, UDP-N-acetylglucosamine acyltr	5e-08
COG1044	338	COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]	1e-07
cd03351	254	cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamin	1e-07
pfam12804	178	pfam12804, NTP_transf_3, MobA-like NTP transferase	2e-07
cd02523	229	cd02523, PC_cytidylyltransferase, Phosphocholine c	2e-07
cd02540	229	cd02540, GT2_GlmU_N_bac, N-terminal domain of bact	5e-07
PRK14353	446	PRK14353, glmU, bifunctional N-acetylglucosamine-1	7e-07
PRK14354	458	PRK14354, glmU, bifunctional N-acetylglucosamine-1	2e-06
COG4750	231	COG4750, LicC, CTP:phosphocholine cytidylyltransfe	2e-06
PRK14360	450	PRK14360, glmU, bifunctional N-acetylglucosamine-1	2e-06
PRK12461	255	PRK12461, PRK12461, UDP-N-acetylglucosamine acyltr	2e-06
COG1213	239	COG1213, COG1213, Predicted sugar nucleotidyltrans	3e-06
TIGR01852	254	TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protei	3e-06
COG0746	192	COG0746, MobA, Molybdopterin-guanine dinucleotide	4e-06
cd04651	104	cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenyly	6e-06
COG1044	338	COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]	6e-06
cd02538	240	cd02538, G1P_TT_short, G1P_TT_short is the short f	6e-06
COG1208	358	COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph	7e-06
PRK14354	458	PRK14354, glmU, bifunctional N-acetylglucosamine-1	7e-06
cd02503	181	cd02503, MobA, MobA catalyzes the formation of mol	7e-06
PRK02862	429	PRK02862, glgC, glucose-1-phosphate adenylyltransf	8e-06
PRK14355	459	PRK14355, glmU, bifunctional N-acetylglucosamine-1	8e-06
cd02516	218	cd02516, CDP-ME_synthetase, CDP-ME synthetase is i	1e-05
TIGR01853	324	TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo	1e-05
COG1044	338	COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]	2e-05
PRK00844	407	PRK00844, glgC, glucose-1-phosphate adenylyltransf	2e-05
TIGR01208	353	TIGR01208, rmlA_long, glucose-1-phosphate thymidyl	3e-05
PRK15480	292	PRK15480, PRK15480, glucose-1-phosphate thymidylyl	3e-05
cd03353	193	cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosph	3e-05
cd03358	119	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed p	4e-05
TIGR01207	286	TIGR01207, rmlA, glucose-1-phosphate thymidylyltra	6e-05
cd04182	186	cd04182, GT_2_like_f, GT_2_like_f is a subfamily o	6e-05
TIGR01853	324	TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo	7e-05
TIGR02623	254	TIGR02623, G1P_cyt_trans, glucose-1-phosphate cyti	9e-05
PRK14354	458	PRK14354, glmU, bifunctional N-acetylglucosamine-1	1e-04
cd02541	267	cd02541, UGPase_prokaryotic, Prokaryotic UGPase ca	1e-04
cd04651	104	cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenyly	2e-04
COG1207	460	COG1207, GlmU, N-acetylglucosamine-1-phosphate uri	2e-04
COG1210	291	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell	2e-04
cd05824	80	cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate	2e-04
TIGR00453	217	TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phospha	2e-04
COG1043	260	COG1043, LpxA, Acyl-[acyl carrier protein]	2e-04
cd05636	163	cd05636, LbH_G1P_TT_C_like, Putative glucose-1-pho	2e-04
cd03358	119	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed p	4e-04
TIGR03992	393	TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph	5e-04
PRK00155	227	PRK00155, ispD, 2-C-methyl-D-erythritol 4-phosphat	5e-04
COG1211	230	COG1211, IspD, 4-diphosphocytidyl-2-methyl-D-erith	5e-04
PRK09382	378	PRK09382, ispDF, bifunctional 2-C-methyl-D-erythri	6e-04
cd04647	109	cd04647, LbH_MAT_like, Maltose O-acyltransferase (	7e-04
PRK14358	481	PRK14358, glmU, bifunctional N-acetylglucosamine-1	7e-04
COG0110	190	COG0110, WbbJ, Acetyltransferase (isoleucine patch	8e-04
COG1044	338	COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]	9e-04
PRK00725	425	PRK00725, glgC, glucose-1-phosphate adenylyltransf	9e-04
PRK14357	448	PRK14357, glmU, bifunctional N-acetylglucosamine-1	9e-04
cd05824	80	cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate	0.001
TIGR01105	297	TIGR01105, galF, UTP-glucose-1-phosphate uridylylt	0.001
COG2068	199	COG2068, COG2068, Uncharacterized MobA-related pro	0.001
TIGR01173	451	TIGR01173, glmU, UDP-N-acetylglucosamine diphospho	0.002
pfam00132	36	pfam00132, Hexapep, Bacterial transferase hexapept	0.002
cd04645	153	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydra	0.002
PLN02241	436	PLN02241, PLN02241, glucose-1-phosphate adenylyltr	0.004

>gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2

 Score =  207 bits (528), Expect = 1e-64
 Identities = 86/220 (39%), Positives = 126/220 (57%), Gaps = 8/220 (3%)

Query: 3   FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAA 62
           FQ V+LAGG   +L PL    +PKALLPVAN+P++ Y L+ LE +  +D+IVVV   + A
Sbjct: 1   FQAVILAGGGGSRLYPLTDN-IPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQA 59

Query: 63  LRVGGWISA--AYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
                  S       +L      + ED+GTA +LR I   +  KD LV+S DL++D+P  
Sbjct: 60  EISTYLRSFPLNLKQKLDEVTIVLDEDMGTADSLRHIRKKIK-KDFLVLSCDLITDLPLI 118

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
            +   HR HDA +T ++   PVS   +    G K K+KK    ++IG+D   Q LL I +
Sbjct: 119 ELVDLHRSHDASLTVLLYPPPVSSEQK----GGKGKSKKADERDVIGLDEKTQRLLFITS 174

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL 220
             +L++D  +RKS+L+   ++ I   L+DAH+Y F R VL
Sbjct: 175 EEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214

N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 214

>gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity

 Score =  168 bits (427), Expect = 1e-49
 Identities = 72/228 (31%), Positives = 112/228 (49%), Gaps = 22/228 (9%)

Query: 3   FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAA 62
           FQ VVLA G   + +PL + ++PKALLPVAN P++ Y LE LE + ++++ VV      A
Sbjct: 1   FQAVVLADGFGSRFLPL-TSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQA 59

Query: 63  LRVGGWISAAYVDRLHVEVATVP----EDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVP 118
           +      S        + V  +     E  G A  LR I   +   D L++S DLVS++P
Sbjct: 60  IIEHLLKSKWSSLSSKMIVDVITSDLCESAGDALRLRDIRGLIR-SDFLLLSCDLVSNIP 118

Query: 119 PGAVTAA----HRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQF 174
              +        +   A +T ++ S PVS           +++KK    ++I +D   Q 
Sbjct: 119 LSELLEERRKKDKNAIATLTVLLASPPVS----------TEQSKKTEEEDVIAVDSKTQR 168

Query: 175 LLHIATGAELEKDTR--IRKSILRAVGQMDIRADLMDAHMYAFNRSVL 220
           LL +    +L++D    IRKS+L     + IR DL+D H+Y  +  VL
Sbjct: 169 LLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216

N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 216

>gnl|CDD|100057 cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

 Score =  123 bits (310), Expect = 2e-34
 Identities = 40/79 (50%), Positives = 59/79 (74%)

Query: 365 MLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQ 424
           ++GE +Q+G+K S+KRSVIG +C+IG  VK+ N V+M++VTI DGC+++  +I + A + 
Sbjct: 1   LVGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIG 60

Query: 425 ERVALKDCQVGQGYVVSAG 443
           E+  LKDC VG GY V AG
Sbjct: 61  EKCKLKDCLVGSGYRVEAG 79

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 81

>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

 Score =  125 bits (317), Expect = 2e-32
 Identities = 92/452 (20%), Positives = 166/452 (36%), Gaps = 110/452 (24%)

Query: 4   QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL 63
           + V+LAGG   +L PL + + PK LLP+A +P++ YVLE L  + ++++++VV       
Sbjct: 3   KAVILAGGYGTRLRPL-TDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVG------ 55

Query: 64  RVGGWISAAYVDR--LHVEVATVPEDV--GTAGALRAIAHHLTAKDVLVVSGDLVSDVPP 119
            +G  I   + D   L V +  V E    GTAGAL+     L   D LV++GD+++D+  
Sbjct: 56  YLGEQIEEYFGDGEGLGVRITYVVEKEPLGTAGALKNALDLLGGDDFLVLNGDVLTDLDL 115

Query: 120 GAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIA 179
             +   H++  A+ T  I    V   SE G                              
Sbjct: 116 SELLEFHKKKGALAT--IALTRVLDPSEFG------------------------------ 143

Query: 180 TGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLP 239
                + D R+ +   +   + +  ++L++A +Y F+  V  + +++ ++F   ++++LP
Sbjct: 144 VVETDDGDGRVVEFREKPGPE-EPPSNLINAGIYIFDPEVF-DYIEKGERF-DFEEELLP 200

Query: 240 YLVRSQLK------SEILIN-GAPQGQQAKENGNDKVSYRILANASTPSFHE--LYALGP 290
            L                ++ G P   +     N      +L      S        +  
Sbjct: 201 ALAAKGEDVYGYVFEGYWLDIGTP---EDLLEAN-----ELLLRGDGKSPLGPIEEPVVI 252

Query: 291 NGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHP 350
             SA +       V I   +K                  IG    +  Y           
Sbjct: 253 IRSAYI----IGPVVIGPGAK------------------IGPGALIGPY----------- 279

Query: 351 SAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGC 410
              +G   T+G                +K S+I  +  IG    + +S++  +  IG   
Sbjct: 280 -TVIGEGVTIGNG------------VEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGASL 326

Query: 411 SIQGSVICSNAQLQ-ERVALKDCQVGQGYVVS 441
            I   VI  N+++    V      V  G +  
Sbjct: 327 IIGDVVIGINSEILPGVVVGPGSVVESGEIED 358

Length = 358

>gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars

 Score =  101 bits (255), Expect = 5e-25
 Identities = 61/245 (24%), Positives = 106/245 (43%), Gaps = 49/245 (20%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV-EGADAAL 63
            V+LA G   +L PL +   PK LLP+A +P+L Y++E+L  + I ++I+VV    +   
Sbjct: 1   AVILAAGKGTRLRPL-TDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQ-- 57

Query: 64  RVGGWISAAYVD--RLHVEVATVPEDV--GTAGALRAIAHHLTAKDVLVVSGDLVSDVPP 119
                I   + D  +  V +  V ++   GTAGA+R     L   D LVV+GD+++D+  
Sbjct: 58  -----IEEYFGDGSKFGVNIEYVVQEEPLGTAGAVRNAEDFLGDDDFLVVNGDVLTDLDL 112

Query: 120 GAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIA 179
             +   HR   A  T  +  V                   P RY ++ +D   + +    
Sbjct: 113 SELLRFHREKGADATIAVKEVED-----------------PSRYGVVELDDDGR-VTRF- 153

Query: 180 TGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLP 239
               +EK T + +S            +L +A +Y F   +L  + +   + +    D +P
Sbjct: 154 ----VEKPT-LPES------------NLANAGIYIFEPEILDYIPEILPRGEDELTDAIP 196

Query: 240 YLVRS 244
            L+  
Sbjct: 197 LLIEE 201

Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Length = 217

>gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

 Score = 86.1 bits (214), Expect = 7e-21
 Identities = 26/69 (37%), Positives = 42/69 (60%)

Query: 366 LGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQE 425
           +GE + +G+   +K SVIG + RIG  V + NS++M++VTIG    I  S+I  NA + E
Sbjct: 2   IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGE 61

Query: 426 RVALKDCQV 434
            V + +  +
Sbjct: 62  NVRVVNLCI 70

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79

>gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

 Score = 83.4 bits (207), Expect = 7e-20
 Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 5/80 (6%)

Query: 366 LGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQE 425
           +G G+ +G+  ++K SVIGR+C+IG NV + NS + + VTI DGC+I  S++   A +  
Sbjct: 2   IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIG- 60

Query: 426 RVALKDCQVGQGYVVSAGCE 445
               K C +  G ++S G  
Sbjct: 61  ----KGCTIPPGSLISFGVV 76

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 79

>gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of nucleotidyl transferases

 Score = 83.8 bits (208), Expect = 1e-18
 Identities = 69/249 (27%), Positives = 97/249 (38%), Gaps = 58/249 (23%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLI--------VVV 56
            V+LAGG   +L  +V K++PK L PVA RP L Y+LE L    I  ++         + 
Sbjct: 1   AVILAGGLGTRLRSVV-KDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIE 59

Query: 57  EGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD 116
           E      R G  I   YV          PE +GT GA++     L     LV++GD   D
Sbjct: 60  EYFGDGYRGG--IRIYYVIE--------PEPLGTGGAIKNALPKLPEDQFLVLNGDTYFD 109

Query: 117 VPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLL 176
           V   A+ AA R   A  T M     V   S               RY             
Sbjct: 110 VDLLALLAALRASGADAT-MAL-RRVPDAS---------------RYG------------ 140

Query: 177 HIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQD 236
                  ++ D R+   + +  G       L++  +Y   + +L E+    D F SL+ D
Sbjct: 141 ----NVTVDGDGRVIAFVEKGPGA---APGLINGGVYLLRKEILAEI--PADAF-SLEAD 190

Query: 237 VLPYLVRSQ 245
           VLP LV+  
Sbjct: 191 VLPALVKRG 199

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. Length = 223

>gnl|CDD|133040 cd04197, eIF-2B_epsilon_N, The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2

 Score = 76.1 bits (188), Expect = 7e-16
 Identities = 57/231 (24%), Positives = 103/231 (44%), Gaps = 27/231 (11%)

Query: 3   FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAA 62
            Q VVLA   +++  PL +KE P+ LLP+AN P++ Y LE L L+ ++++ V    + + 
Sbjct: 1   LQAVVLADSFNRRFRPL-TKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFC-CSHSD 58

Query: 63  -----LRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAI-AHHLTAKDVLVVSGDLVSD 116
                +    W        + V +    +      ALR + A  L   D ++VSGD+VS+
Sbjct: 59  QIKEYIEKSKWSKPKS-SLMIVIIIMSEDCRSLGDALRDLDAKGLIRGDFILVSGDVVSN 117

Query: 117 VPPGAVTAAHRRH-----DAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPT 171
           +    +   H+       +A++T ++         EA       +T +     +I +DP 
Sbjct: 118 IDLKEILEEHKERRKKDKNAIMTMVL--------KEASPPHRTRRTGEEF---VIAVDPK 166

Query: 172 KQFLLHIATGAELEKDTRIR--KSILRAVGQMDIRADLMDAHMYAFNRSVL 220
              LLH       +  +       +L +  +++IR DL+D H+   +  VL
Sbjct: 167 TSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217

N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 217

>gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase

 Score = 71.1 bits (175), Expect = 5e-14
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 11/157 (7%)

Query: 6   VVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALR 64
           ++LAGG+  +L PL ++ + K L+PV ++ P++ Y L +L  + I++ IV+    +    
Sbjct: 3   IILAGGSGTRLWPL-TRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVIC-TQEHRFL 60

Query: 65  VGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD---VLVVSGDLVSDVPPGA 121
           V   +       L V  A  PE  GTA A+   A  L   D   VLV+ GD +  +    
Sbjct: 61  VAEQLGDGSKFGLQVTYALQPEPRGTAPAVALAADFLGDDDPELVLVLGGDHIYRMDFEE 120

Query: 122 VTAAHRRHDAVVTAMICSVPVS-----GLSEAGSSGA 153
                R   A  T     VPV      G+ E   +G 
Sbjct: 121 AVQKARAKAADGTVTFGIVPVEDPTGYGVIEFDENGR 157

This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars. Length = 247

>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

 Score = 70.4 bits (173), Expect = 3e-13
 Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 8/128 (6%)

Query: 317 NSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKC 376
            + +  ++ N  ++            +    I     +     +    ++G G+++G   
Sbjct: 222 GTPEDLLEANELLLRGDGK-------SPLGPIEEPVVIIRSAYIIGPVVIGPGAKIGPGA 274

Query: 377 SVKR-SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVG 435
            +   +VIG    IG+ V++ NS++M++V IG G  I  S+I  N ++   + + D  +G
Sbjct: 275 LIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGASLIIGDVVIG 334

Query: 436 QGYVVSAG 443
               +  G
Sbjct: 335 INSEILPG 342

Length = 358

>gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score = 69.2 bits (170), Expect = 1e-12
 Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 4/115 (3%)

Query: 4   QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL 63
           + V+LA G   ++ PL     PK +LPVA +P+L +++E L  + I D + VV      +
Sbjct: 2   KAVILAAGKGTRMRPLTET-RPKPMLPVAGKPLLEHIIEALRDAGIDDFVFVVGYGKEKV 60

Query: 64  RVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVP 118
           R   +        + +E     E +GTA AL +   ++  +  LV++GD++ D  
Sbjct: 61  R--EYFGDGSRGGVPIEYVVQEEQLGTADALGSAKEYVDDE-FLVLNGDVLLDSD 112

The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393

>gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family

 Score = 63.0 bits (154), Expect = 2e-11
 Identities = 31/140 (22%), Positives = 60/140 (42%), Gaps = 20/140 (14%)

Query: 7   VLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVG 66
           +LA G   ++ PL +   PK L+PVA +P++ + L++L  + I+ ++V            
Sbjct: 4   ILAAGLGTRMRPL-TDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNT---------- 52

Query: 67  GWISAAYVDRLH-----VEVATVPEDV---GTAGALRAIAHHLTAKDVLVVSGDLVSDVP 118
             ++      L      + +    E      T G ++     L  +  LVV+GD++ D  
Sbjct: 53  HHLADQIEAHLGDSRFGLRITISDEPDELLETGGGIKKALPLLGDEPFLVVNGDILWDGD 112

Query: 119 PGAVTAAHR-RHDAVVTAMI 137
              +   H  R DA++  + 
Sbjct: 113 LAPLLLLHAWRMDALLLLLP 132

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 221

>gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

 Score = 63.4 bits (155), Expect = 4e-11
 Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 6/109 (5%)

Query: 6   VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV--EGADAAL 63
           V+LAGG+  +L PL ++ VPK LLPV ++P++ Y LE L L+ I+D+++VV  E      
Sbjct: 4   VILAGGSGTRLRPL-TRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFK 62

Query: 64  RVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD 112
            + G  S   VD   +  A  PE  G A A+      +   D ++  GD
Sbjct: 63  ELLGDGSDFGVD---ITYAVQPEPDGLAHAVLIAEDFVGDDDFVLYLGD 108

Length = 286

>gnl|CDD|234858 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

 Score = 62.8 bits (154), Expect = 7e-11
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 13/79 (16%)

Query: 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV-------KRSVIGRHCRIGSNVKVVNSV 399
           +I PSA++G   ++GP+ ++G G  +GD   +           IG  CR+ +NV      
Sbjct: 108 VIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANV-----T 162

Query: 400 VMNHVTIGDGCSIQ-GSVI 417
           + + V IG+   I  G+VI
Sbjct: 163 IYHAVRIGNRVIIHSGAVI 181

Length = 343

>gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

 Score = 61.5 bits (150), Expect = 8e-11
 Identities = 49/246 (19%), Positives = 99/246 (40%), Gaps = 48/246 (19%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV-EGADAAL 63
            ++L GG   +L PL    VPK L+   N+P++ + +E L  + +K++I+ V    +  +
Sbjct: 3   ALILVGGYGTRLRPLTLT-VPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDMV 61

Query: 64  RVGGWISAAYVDRLHVEVATVPED--VGTAGALRAIAHHLT--AKDVLVVSGDLVSDVPP 119
                    Y  +L +++    E   +GTAG L      L    +   V++ D++ D P 
Sbjct: 62  P----FLKEYEKKLGIKITFSIETEPLGTAGPLALARDLLGDDDEPFFVLNSDVICDFPL 117

Query: 120 GAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIA 179
             +   H++H A  T ++                  K + P +Y ++  D          
Sbjct: 118 AELLDFHKKHGAEGTILV-----------------TKVEDPSKYGVVVHD---------- 150

Query: 180 TGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLP 239
                E   RI + + +         + ++A +Y  N SVL  +     +  S+++++ P
Sbjct: 151 -----ENTGRIERFVEKPK---VFVGNKINAGIYILNPSVLDRI---PLRPTSIEKEIFP 199

Query: 240 YLVRSQ 245
            +    
Sbjct: 200 KMASEG 205

GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 233

>gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

 Score = 56.7 bits (138), Expect = 3e-10
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 365 MLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNA 421
           ++ EG  +    +V+ SV+ R  R+GS   V +SV+M +V IG    I+ ++I  N 
Sbjct: 14  LVSEGCII-SGGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNV 69

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. Length = 104

>gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family

 Score = 59.4 bits (145), Expect = 4e-10
 Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 16/136 (11%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV----EGAD 60
           VV++AGG   +L PL ++  PK +L V  +P+L  ++++      ++  + V    E  +
Sbjct: 1   VVIMAGGKGTRLRPL-TENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIE 59

Query: 61  AALRVGGWISAAYVDRLHVEVATVPED--VGTAGALRAIAHHLTAKDVLVVSGDLVSDVP 118
                G         +  V ++ V ED  +GTAGAL  +    T    LV++GD+++++ 
Sbjct: 60  DYFGDG--------SKFGVNISYVREDKPLGTAGALSLLPEKPTD-PFLVMNGDILTNLN 110

Query: 119 PGAVTAAHRRHDAVVT 134
              +   H+ ++A  T
Sbjct: 111 YEHLLDFHKENNADAT 126

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 220

>gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase

 Score = 60.7 bits (148), Expect = 5e-10
 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 4/112 (3%)

Query: 319 IQAFMDINRDVIGEANHLSGYNFSAQ---NNIIHPSAELGSKTTVGPHCMLGEGSQMGDK 375
           I +F + N D++        Y+        N   P A+           ++ EG  +   
Sbjct: 247 IDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVSEGCIISG- 305

Query: 376 CSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERV 427
            +V  SV+G   RIGS   V +SV+M  V IG G  I+ ++I  N ++ E V
Sbjct: 306 ATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGV 357

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 361

>gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

 Score = 53.0 bits (128), Expect = 3e-09
 Identities = 15/71 (21%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI 406
           +I  S  +G    +    ++G+  ++GD  ++  S++  +  IG+N  +V+S++ ++  I
Sbjct: 1   LIGESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVI 59

Query: 407 GDGCSIQGSVI 417
           G+   +    I
Sbjct: 60  GENVRVVNLCI 70

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79

>gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase

 Score = 56.0 bits (136), Expect = 6e-09
 Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          ++LAGG   +L PL +   PK L+PVA +P++ Y +E L  + I+D+ +VV
Sbjct: 4  LILAGGKGTRLRPL-TYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVV 53

This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. Length = 236

>gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

 Score = 56.9 bits (138), Expect = 8e-09
 Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 14/112 (12%)

Query: 317 NSIQAFMDINRDVIGEANHLSGYNFSAQ---NNIIHPSAELGSKTTVGPHCMLGEGSQMG 373
            +I ++ + N D++     L+ Y+ +      N   P A+  + + V         S + 
Sbjct: 248 GTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEV-------SNSLVA 300

Query: 374 DKC----SVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNA 421
             C    +V+ SV+ R  RIG    + NSV+M  V IG+G  ++ ++I  N 
Sbjct: 301 GGCIISGTVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNV 352

Length = 393

>gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

 Score = 54.7 bits (133), Expect = 1e-08
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 351 SAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKV-VNSVVMNHVTIGD 408
           SA++G   ++GP+ ++GEG  +GD   +    VIG    IG +  +  N  +     IGD
Sbjct: 1   SAKIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGD 60

Query: 409 GCSIQ-GSVI 417
              I  G+VI
Sbjct: 61  RVIIHSGAVI 70

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205

>gnl|CDD|133050 cd06428, M1P_guanylylT_A_like_N, N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 10/139 (7%)

Query: 5   VVVLAGGTSK--KLVPLVSKEVPKALLPVANRPVLSYVLEQL-ELSNIKDLIVVVEGADA 61
            V+L GG  K  +  PL S +VPK L PVA +P++ + +E   ++ ++K+++++    ++
Sbjct: 1   AVILVGGPQKGTRFRPL-SLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPES 59

Query: 62  ALRVGGWISAAYVD-RLHVEVATVPEDVGTAGALRAIAHHLTA---KDVLVVSGDLVSDV 117
                 +IS A  +  + +      + +GTAG L      + A       V++ D+  D 
Sbjct: 60  VFS--DFISDAQQEFNVPIRYLQEYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDF 117

Query: 118 PPGAVTAAHRRHDAVVTAM 136
           P   +   H++H A  T +
Sbjct: 118 PLQELLEFHKKHGASGTIL 136

N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes including cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 257

>gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 27/129 (20%)

Query: 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI 406
            I  + E+G    + P+ +L    ++GD   +    + ++  IGSNV +    V+    I
Sbjct: 257 DIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEI 316

Query: 407 GDGCSI-------QGSVICS-----------NAQLQERVA------LKDCQVGQGYVVSA 442
           G+GC +        GSV+ +           NA++ +         L D ++G    + A
Sbjct: 317 GEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKGSKAGHLSYLGDAEIGSNVNIGA 376

Query: 443 G---CEYKG 448
           G   C Y G
Sbjct: 377 GTITCNYDG 385

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451

>gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

 Score = 54.9 bits (133), Expect = 4e-08
 Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 17/140 (12%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV-EGA 59
           M    V+LA G   ++      ++PK L PVA +P+L +V++        D++VVV  GA
Sbjct: 1   MSLSAVILAAGKGTRM----KSDLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGA 56

Query: 60  DAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA---KDVLVVSGD--LV 114
           +        +  A  +R  VE     E +GT  A+      L      DVLV+ GD  L+
Sbjct: 57  EQ-------VREALAERDDVEFVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLI 109

Query: 115 SDVPPGAVTAAHRRHDAVVT 134
           +      + AAH  H A  T
Sbjct: 110 TAETLEELLAAHPAHGAAAT 129

Length = 460

>gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 54.5 bits (132), Expect = 4e-08
 Identities = 28/141 (19%), Positives = 61/141 (43%), Gaps = 23/141 (16%)

Query: 319 IQAFMDINRDVIGEANHLSGYN-----FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMG 373
           I++  + N +++   N L+ ++     +S   N   P   +     V       + S + 
Sbjct: 247 IESLWEANMELLRPENPLNLFDRNWRIYS--VNPNLPPQYIAENAKV-------KNSLVV 297

Query: 374 DKC----SVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVAL 429
           + C    +V+ SV+ +  ++G    V +SV+M    IG+   I+ ++I  NA + + V +
Sbjct: 298 EGCVVYGTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVII 357

Query: 430 KDCQ-----VGQGYVVSAGCE 445
              +     +G+  V+  G  
Sbjct: 358 GGGKEVITVIGENEVIGVGTV 378

Length = 380

>gnl|CDD|234265 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

 Score = 52.5 bits (127), Expect = 5e-08
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 17/112 (15%)

Query: 338 GYNFSAQNNIIHPSA------ELGSKTTVGPHCMLGEGSQMGDKCSV-KRSVIGRHCRIG 390
           GY F+    +IHPSA       +G  T +    ++    ++GD   +   +++   C IG
Sbjct: 74  GYRFA---TLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIG 130

Query: 391 SNVKV-VNSVVMNHVTIGDGCSIQGSVICSNAQLQERVAL-KDCQVGQGYVV 440
             V +     +   V IG+G  I G    + A + + V +     VG G VV
Sbjct: 131 DYVHIAPGVTLSGGVVIGEGVFI-G----AGATIIQGVTIGAGAVVGAGAVV 177

This family of proteins includes the characterized NeuD sialic acid O-acetyltransferase enzymes from E. coli and Streptococcus agalactiae (group B strep). These two are quite closely related to one another, so extension of this annotation to other members of the family in unsupported without additional independent evidence. The neuD gene is often observed in close proximity to the neuABC genes for the biosynthesis of CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD sequences from these organisms were used to construct the seed for this model. Nevertheless, there are numerous instances of sequences identified by this model which are observed in a different genomic context (although almost universally in exopolysaccharide biosynthesis-related loci), as well as in genomes for which the biosynthesis of sialic acid (SA) is undemonstrated. Even in the cases where the association with SA biosynthesis is strong, it is unclear in the literature whether the biological substrate is SA iteself, CMP-SA, or a polymer containing SA. Similarly, it is unclear to what extent the enzyme has a preference for acetylation at the 7, 8 or 9 positions. In the absence of evidence of association with SA, members of this family may be involved with the acetylation of differring sugar substrates, or possibly the delivery of alternative acyl groups. The closest related sequences to this family (and those used to root the phylogenetic tree constructed to create this model) are believed to be succinyltransferases involved in lysine biosynthesis. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. Length = 193

>gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

 Score = 52.5 bits (127), Expect = 5e-08
 Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 28/111 (25%)

Query: 346 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNS--VVMNH 403
            +IHPSA       V P  ++GEG  +        +VI    RIG NV ++N+  V+ + 
Sbjct: 85  TLIHPSA------VVSPSAVIGEGCVIM-----AGAVINPDARIGDNV-IINTGAVIGHD 132

Query: 404 VTIGDGCSIQ-GSVICSNAQLQERVAL-------------KDCQVGQGYVV 440
             IGD   I  G V+     + E   +                 +G G VV
Sbjct: 133 CVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVV 183

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. Length = 197

>gnl|CDD|235390 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score = 53.6 bits (130), Expect = 5e-08
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 17/72 (23%)

Query: 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI 406
           I+ P A++G    +GP C++G          V   VIG    IGS+V     V+  H TI
Sbjct: 10  IVEPGAKIGENVEIGPFCVIGPN--------V---VIGDGTVIGSHV-----VIDGHTTI 53

Query: 407 GDGCSI-QGSVI 417
           G    I   + I
Sbjct: 54  GKNNRIFPFASI 65

Length = 262

>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 3/77 (3%)

Query: 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV-KRSVIGRHCRIGSNVKVV-NSVVMNHV 404
           +I P+A +G   ++GP+ ++G G  +G+   +   +VIG + +IG    +  N  + ++V
Sbjct: 107 VIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNV 166

Query: 405 TIGDGCSIQ-GSVICSN 420
            IG+   I  G+VI ++
Sbjct: 167 VIGNNVIIHSGAVIGAD 183

Length = 338

>gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

 Score = 52.4 bits (127), Expect = 1e-07
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 17/72 (23%)

Query: 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI 406
           I+ P A++G    +GP C++G               IG    IGS+V     V+    TI
Sbjct: 7   IVDPGAKIGENVEIGPFCVIGPN-----------VEIGDGTVIGSHV-----VIDGPTTI 50

Query: 407 GDGCSI-QGSVI 417
           G    I   + I
Sbjct: 51  GKNNRIFPFASI 62

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. Length = 254

>gnl|CDD|221780 pfam12804, NTP_transf_3, MobA-like NTP transferase domain

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 38/136 (27%), Positives = 54/136 (39%), Gaps = 22/136 (16%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
            V+LAGG S ++         KALLP+  +P+L  VL++  L    D +VVV        
Sbjct: 1   GVILAGGRSSRM------GGDKALLPLGGKPLLERVLDR--LRPAGDEVVVVTNRPEI-- 50

Query: 65  VGGWISAAYVDRLHVEVATVP-EDVGTAGALRAIAHHLTAKD-VLVVSGDLVSDVPPGAV 122
                 AA +  L V V   P    G    L A        D VLV++ D+   + P  +
Sbjct: 51  ------AAALAGLGVPVVPDPDPGQGPLAGLAAGLRAAPDADAVLVLACDMP-FLTPDLL 103

Query: 123 T---AAHRRHDAVVTA 135
               AA     A +  
Sbjct: 104 RRLLAALEASGADIAV 119

This family includes the MobA protein (Molybdopterin-guanine dinucleotide biosynthesis protein A). The family also includes a wide range of other NTP transferase domain. Length = 178

>gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 18/116 (15%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
            ++LA G   +L PL +++ PK LL +  +P+L   +E L+ + I D+++V         
Sbjct: 1   AIILAAGRGSRLRPL-TEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVT-------- 51

Query: 65  VGGWISAAYVDRL--HVEVATV----PEDVGTAGALRAIAHHLTAKDVLVVSGDLV 114
             G+      + L  +  +  V      +     +L  +A     +D L++ GD+V
Sbjct: 52  --GYKKEQIEELLKKYPNIKFVYNPDYAETNNIYSL-YLARDFLDEDFLLLEGDVV 104

This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP-Cho to either lipoteichoic acid or lipopolysaccharide. Length = 229

>gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU

 Score = 50.2 bits (121), Expect = 5e-07
 Identities = 40/140 (28%), Positives = 58/140 (41%), Gaps = 27/140 (19%)

Query: 5   VVVLAGG--T---SKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV-EG 58
            V+LA G  T   S           PK L P+A +P+L +VL+         ++VVV  G
Sbjct: 1   AVILAAGKGTRMKSDL---------PKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHG 51

Query: 59  ADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT--AKDVLVVSGD--LV 114
           A+             +   +VE     E +GT  A++     L     DVLV+ GD  L+
Sbjct: 52  AEQV--------KKALANPNVEFVLQEEQLGTGHAVKQALPALKDFEGDVLVLYGDVPLI 103

Query: 115 SDVPPGAVTAAHRRHDAVVT 134
           +      +  AHR   A VT
Sbjct: 104 TPETLQRLLEAHREAGADVT 123

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. Length = 229

>gnl|CDD|184642 PRK14353, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 51.0 bits (123), Expect = 7e-07
 Identities = 37/134 (27%), Positives = 55/134 (41%), Gaps = 17/134 (12%)

Query: 6   VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRV 65
           ++LA G   ++       +PK L PVA RP+L++VL          + VVV G  A    
Sbjct: 9   IILAAGEGTRM----KSSLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVV-GPGAEA-- 61

Query: 66  GGWISAAYVDRLHVEVATV--PEDVGTAGALRAIAHHLT--AKDVLVVSGD--LVSDVPP 119
                AA   ++  +       E +GTA A+ A    L     DVLV+ GD  L++    
Sbjct: 62  ----VAAAAAKIAPDAEIFVQKERLGTAHAVLAAREALAGGYGDVLVLYGDTPLITAETL 117

Query: 120 GAVTAAHRRHDAVV 133
             +         VV
Sbjct: 118 ARLRERLADGADVV 131

Length = 446

>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 49.8 bits (120), Expect = 2e-06
 Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 16/115 (13%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV-EGA 59
           M+   ++LA G   ++    SK +PK L  V  +P++ +V++ ++ + I  ++ VV  GA
Sbjct: 1   MNRYAIILAAGKGTRMK---SK-LPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGA 56

Query: 60  DAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD--VLVVSGD 112
           +    V G       DR   E A   E +GT  A+      L  K+   LV+ GD
Sbjct: 57  EEVKEVLG-------DR--SEFALQEEQLGTGHAVMQAEEFLADKEGTTLVICGD 102

Length = 458

>gnl|CDD|227093 COG4750, LicC, CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          ++LA G   + VPL ++  PK+LL V   P++   +EQL  + I D+ +VV
Sbjct: 4  IILAAGLGSRFVPL-TQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVV 53

Length = 231

>gnl|CDD|184646 PRK14360, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 13/109 (11%)

Query: 347 IIHPSAELGSKTTVGPHCMLG-----EGSQMGDKCSVKRSVIGRHCRIGSNVKV-VNSVV 400
           II P   L   T +G  C +G     E SQ+G+  +V  SV+    +IG  VK+   + +
Sbjct: 270 IIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVV-SDSQIGDGVKIGPYAHL 328

Query: 401 MNHVTIGDGCSIQGSVICSNAQLQER--VA----LKDCQVGQGYVVSAG 443
                IG  C I   V    +QL E   V     + D  +G+   + AG
Sbjct: 329 RPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAG 377

Length = 450

>gnl|CDD|183539 PRK12461, PRK12461, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 14/80 (17%)

Query: 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV-KRSVIGRHCRIGSNVKVVNSVVM---- 401
           +I PSA+LGS   +GP  ++G   ++GD   +   +VI    RIG N K+    V+    
Sbjct: 7   VIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEP 66

Query: 402 ---------NHVTIGDGCSI 412
                    + + IGD   I
Sbjct: 67  QDFTYKGEESRLEIGDRNVI 86

Length = 255

>gnl|CDD|224134 COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 5  VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEG 58
           V+LA G   +L P    ++PKAL+ V  R ++   +E L  + I + +VV  G
Sbjct: 6  AVILAAGFGSRLGP----DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNG 55

Length = 239

>gnl|CDD|188173 TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 17/72 (23%)

Query: 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI 406
           II P AE+G    +GP C++G G             IG    + S+V     V++ H TI
Sbjct: 6   IIEPGAEIGENVEIGPFCIVGPG-----------VKIGDGVELKSHV-----VILGHTTI 49

Query: 407 GDGCSI-QGSVI 417
           G+G  I  G+VI
Sbjct: 50  GEGTRIFPGAVI 61

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254

>gnl|CDD|223817 COG0746, MobA, Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 23/139 (16%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
                V+LAGG S+++         KALLP+  RP++ +V+++L       +I       
Sbjct: 3   TPMTGVILAGGKSRRMRD-------KALLPLNGRPLIEHVIDRLRPQVDVVVISANRNQG 55

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
                G          L V V       G    + A   H   + VLV+  D+   +PP 
Sbjct: 56  RYAEFG----------LPV-VPDELPGFGPLAGILAALRHFGTEWVLVLPCDMPF-IPPE 103

Query: 121 AV----TAAHRRHDAVVTA 135
            V    +A  +   A+V A
Sbjct: 104 LVERLLSAFKQTGAAIVPA 122

Length = 192

>gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

 Score = 44.8 bits (107), Expect = 6e-06
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 363 HCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQG 414
           + +L  G ++G    V+ SVI  +  IG N  +  +++  +V I DG  I G
Sbjct: 28  NSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGG 79

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. Length = 104

>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 29/119 (24%), Positives = 43/119 (36%), Gaps = 19/119 (15%)

Query: 318 SIQAFMDINRDVIGEANHLSGYNFSAQ--NNIIHPSAELGSKTTVG----PHCMLGEGSQ 371
            I +   I  D  G A    G+    Q    II    E+G+ TT+        ++GEG +
Sbjct: 173 IIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVK 232

Query: 372 MGDKCSVKRSVIGRHCRIGSNVKVVNSVVM-NHVTIGDGCSIQGSV-------ICSNAQ 422
           + +        IG + RIG +  +   V +   V IG    I G V       I     
Sbjct: 233 IDNLVQ-----IGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVT 286

Length = 338

>gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase

 Score = 47.2 bits (113), Expect = 6e-06
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 20/116 (17%)

Query: 6   VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRV 65
           ++LAGG+  +L PL +K V K LLPV ++P++ Y L  L L+ I++++++    D  L  
Sbjct: 4   IILAGGSGTRLYPL-TKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPL-- 60

Query: 66  GGWISAAYVDRL--------HVEVATVPEDVGTAGALRAIAHHLTAKD-VLVVSGD 112
                  + + L         +  A  P+  G A A   I       D V ++ GD
Sbjct: 61  -------FKELLGDGSDLGIRITYAVQPKPGGLAQAF-IIGEEFIGDDPVCLILGD 108

This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Length = 240

>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 382 VIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVV 440
           VIG   +IG    +   +V+   VTIG+G  I+ S+I  N  +     + D  +G+   +
Sbjct: 263 VIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKI 322

Query: 441 SAGCE 445
            A   
Sbjct: 323 GASLI 327

Length = 358

>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 47.9 bits (115), Expect = 7e-06
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 15/110 (13%)

Query: 347 IIHPSAELGSKTTVGPHCMLGEGS-----QMGDKCSVKRSVIGRHCRIGSNVKV------ 395
           +I P   +   T +G  C++G GS      +GD  ++  SVI    ++G NV V      
Sbjct: 273 VIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVI-EESKVGDNVTVGPFAHL 331

Query: 396 -VNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGC 444
              SV+   V IG+   I+ S I    ++     + D +VG+   V+ GC
Sbjct: 332 RPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGEN--VNIGC 379

Length = 458

>gnl|CDD|133000 cd02503, MobA, MobA catalyzes the formation of molybdopterin guanine dinucleotide

 Score = 46.0 bits (110), Expect = 7e-06
 Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 24/133 (18%)

Query: 6   VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRV 65
           V+LAGG S+++         KALL +  +P+L +VLE+L+   + D +V+    D     
Sbjct: 4   VILAGGKSRRM------GGDKALLELGGKPLLEHVLERLK--PLVDEVVISANRD----- 50

Query: 66  GGWISAAYVDRLHVEVAT-VPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAV-- 122
                      L V V    P   G    + A      A  VLV++ D+   +PP  +  
Sbjct: 51  -----QERYALLGVPVIPDEPPGKGPLAGILAALRAAPADWVLVLACDMP-FLPPELLER 104

Query: 123 --TAAHRRHDAVV 133
              AA    DAVV
Sbjct: 105 LLAAAEEGADAVV 117

The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target. Length = 181

>gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 47.6 bits (114), Expect = 8e-06
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 20/88 (22%)

Query: 365 MLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMN-------------------HVT 405
           ++ EG  +   CS+  SV+G   RI S   + +++VM                     + 
Sbjct: 310 IIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLG 368

Query: 406 IGDGCSIQGSVICSNAQLQERVALKDCQ 433
           IG+G +I+ ++I  NA++   V + +  
Sbjct: 369 IGEGTTIKRAIIDKNARIGNNVRIVNKD 396

Length = 429

>gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 7/88 (7%)

Query: 327 RDVIGEANHLSGYNF-SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGR 385
           R  I     L+G      +   I     +G  TT+ P   +   +++G+ C++++ V+ +
Sbjct: 243 RRRINRELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIK 302

Query: 386 HCRIGSNVKV------VNSVVMNHVTIG 407
            CRIG +V V       +SVV + V IG
Sbjct: 303 GCRIGDDVTVKAGSVLEDSVVGDDVAIG 330

Length = 459

>gnl|CDD|133009 cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 34/155 (21%), Positives = 57/155 (36%), Gaps = 39/155 (25%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLE-LSNIKDLIVVVEGADAAL 63
            ++LA G+  ++      ++PK  L +  +PVL + LE       I +++VVV   D   
Sbjct: 3   AIILAAGSGSRM----GADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDID- 57

Query: 64  RVGGWISAAYVDRLHVEVATVPEDVGTAGALR------AIAHHLTAKD--VLV------- 108
                        L   V  V       GA R       +     A    VL+       
Sbjct: 58  ----LAKELAKYGLSKVVKIVE-----GGATRQDSVLNGLKALPDADPDIVLIHDAARPF 108

Query: 109 VSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVS 143
           VS +L+  +    + A  + + A + A    VPV+
Sbjct: 109 VSPELIDRL----IDAL-KEYGAAIPA----VPVT 134

4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. Length = 218

>gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 15/101 (14%)

Query: 348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIG 407
           IHP+A +     +G    +G    +G         IG +  IG  V     V+ + V IG
Sbjct: 94  IHPTAVVDPSAKIGDGVTIGPNVVIGA-----GVEIGENVIIGPGV-----VIGDDVVIG 143

Query: 408 DGCSIQGSV-ICSNAQLQERVALKDCQV----GQGYVVSAG 443
           DG  I  +V I    QL + V +    V    G GY  +A 
Sbjct: 144 DGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTAN 184

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324

>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV-KRSVIGRHCRIGSNVKVVNSVVMNH 403
           N +I     +G    +G   ++GE  ++GD   +     I  +  IG+NV     ++ + 
Sbjct: 123 NVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNV-----IIHSG 177

Query: 404 VTIG-DGCSIQGSVI 417
             IG DG    G+ I
Sbjct: 178 AVIGADGFGYAGTAI 192

Length = 338

>gnl|CDD|234846 PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 46.7 bits (112), Expect = 2e-05
 Identities = 28/143 (19%), Positives = 60/143 (41%), Gaps = 27/143 (18%)

Query: 318 SIQAFMDINRDVIGEANHLSGYN-----FSAQNN-----IIHPSAELGSKTTVGPHCMLG 367
           +I A+ D + D++      + YN     +++  N      +     +GS        ++ 
Sbjct: 264 TIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQD----SLVS 319

Query: 368 EGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERV 427
            GS +    +V+ SV+  +  + S  +V +SV+M+ V IG G  ++ +++  N  +    
Sbjct: 320 AGSII-SGATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVVVPPGA 378

Query: 428 ALKDCQVG-------QGYVVSAG 443
                 +G       + + VS G
Sbjct: 379 -----TIGVDLEEDRRRFTVSEG 396

Length = 407

>gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          ++LA G   +L PL     PK L+PVAN+P+L Y +E L  + I D+ +VV
Sbjct: 3  LILAAGKGTRLRPLTFTR-PKQLIPVANKPILQYAIEDLAEAGITDIGIVV 52

The family of known and putative glucose-1-phosphate thymidyltransferase (also called dTDP-glucose synthase) shows a deep split into a short form (see TIGR01207) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. This form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Alternate name: dTDP-D-glucose synthase. Length = 353

>gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 5/133 (3%)

Query: 6   VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRV 65
           ++LAGG+  +L P V+  V K LLP+ ++P++ Y L  L L+ I+D++++    D   R 
Sbjct: 7   IILAGGSGTRLYP-VTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTP-RF 64

Query: 66  GGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLV---SDVPPGAV 122
              +       L+++    P   G A A       +   D  +V GD +    D+P    
Sbjct: 65  QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCALVLGDNIFYGHDLPKLME 124

Query: 123 TAAHRRHDAVVTA 135
            A ++   A V A
Sbjct: 125 AAVNKESGATVFA 137

Length = 292

>gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

 Score = 44.3 bits (106), Expect = 3e-05
 Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 7/97 (7%)

Query: 348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIG 407
           I    E+G    + P  +L   + +G+ C +  + + +   IG  V +  S V+    IG
Sbjct: 12  IDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIG 71

Query: 408 DGCSI-------QGSVICSNAQLQERVALKDCQVGQG 437
           +G ++        G+V+     +   V +K   +G+G
Sbjct: 72  NGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEG 108

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. Length = 193

>gnl|CDD|100048 cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)

Query: 383 IGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSV-ICSNAQLQERV 427
           IG +C IG+NV      + N V IGD   IQ +V I     +++ V
Sbjct: 1   IGDNCIIGTNV-----FIENDVKIGDNVKIQSNVSIYEGVTIEDDV 41

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. Length = 119

>gnl|CDD|130274 TIGR01207, rmlA, glucose-1-phosphate thymidylyltransferase, short form

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 15/174 (8%)

Query: 6   VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL-- 63
           ++LAGG+  +L P +++ V K LLP+ ++P++ Y L  L L+ I+D++++    D     
Sbjct: 3   IILAGGSGTRLYP-ITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQ 61

Query: 64  RVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLV---SDVPPG 120
           ++ G  S   V+   +  A  P   G A A       +      +V GD +    D+   
Sbjct: 62  QLLGDGSQWGVN---LSYAVQPSPDGLAQAFIIGEDFIGGDPSALVLGDNIFYGHDLSDL 118

Query: 121 AVTAAHRRHDAVVTAMICSVPVS-GLSEAGSSGA----KDKTKKP-GRYNIIGM 168
              AA R   A V A   S P   G+ E  S+G     ++K  +P   Y + G+
Sbjct: 119 LKRAAARESGATVFAYQVSDPERYGVVEFDSNGRAISIEEKPAQPKSNYAVTGL 172

Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 286

>gnl|CDD|133025 cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function

 Score = 43.3 bits (103), Expect = 6e-05
 Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 27/144 (18%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
            ++LA G S ++         K LLP+  +P+L + L+    + +  +IVV+     A+R
Sbjct: 3   AIILAAGRSSRM------GGNKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVR 56

Query: 65  VGGWISAAYVDRLHVEVATVP---EDVGT--AGALRAIAHHLTAKDVLVVSGDLVSDVPP 119
                  A +  L V V   P   E + +  A  L A+     A  VL++  D    V  
Sbjct: 57  -------AALAGLPVVVVINPDWEEGMSSSLAAGLEALPADADA--VLILLADQP-LVTA 106

Query: 120 G---AVTAAHRRHDAVVTAMICSV 140
               A+  A R   A    ++  V
Sbjct: 107 ETLRALIDAFREDGA---GIVAPV 127

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 186

>gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 17/90 (18%)

Query: 329 VIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCR 388
           V+  +  +        N +I    E+G    +GP  ++G+             VIG   R
Sbjct: 99  VVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDD-----------VVIGDGSR 147

Query: 389 IGSNVKVVNSVVMNHVTIGDGCSIQ-GSVI 417
           I  NV     V+   V +G    I  G+VI
Sbjct: 148 IHPNV-----VIYERVQLGKNVIIHSGAVI 172

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324

>gnl|CDD|131672 TIGR02623, G1P_cyt_trans, glucose-1-phosphate cytidylyltransferase

 Score = 43.6 bits (103), Expect = 9e-05
 Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 36/160 (22%)

Query: 4   QVVVLAGGTSKKLVPLVSKEV---PKALLPVANRPVLSYVLEQLELSNIKDLIVV----- 55
           + V+LAGG   ++    S+E    PK ++ +  +P+L ++++      I D I+      
Sbjct: 1   KAVILAGGLGTRI----SEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKG 56

Query: 56  -----------VEGADAALRVGGWISAAYVDRLHVE---VATVPEDVG----TAGALRAI 97
                      +  +D    +    +   V    VE   V  V  D G    T G L+ +
Sbjct: 57  YVIKEYFANYFLHMSDVTFHMAD--NTMEVHHKRVEPWRVTLV--DTGESTQTGGRLKRV 112

Query: 98  AHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHD--AVVTA 135
             +L  +      GD V+D+   A+ A HR+H   A VTA
Sbjct: 113 REYLDDEAFCFTYGDGVADIDIKALIAFHRKHGKKATVTA 152

Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254

>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 17/70 (24%)

Query: 348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIG 407
           I    E+GS T + P  ++ +G           +VIG  C IG   ++V+S      TIG
Sbjct: 262 IDADVEIGSDTVIEPGVVI-KG----------NTVIGEDCVIGPGSRIVDS------TIG 304

Query: 408 DGCSIQGSVI 417
           DG +I  SVI
Sbjct: 305 DGVTITNSVI 314

Length = 458

>gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the synthesis of UDP-glucose

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 17/53 (32%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 4  QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          + V+ A G   + +P  +K +PK +LP+ ++PV+ Y++E+   + I+D+I+V 
Sbjct: 2  KAVIPAAGLGTRFLPA-TKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVT 53

Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. Length = 267

>gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

 Score = 40.1 bits (95), Expect = 2e-04
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 373 GDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDC 432
           G +  VK S++   C I S   V NSV+   V +G G  ++ SVI  N  +     ++  
Sbjct: 5   GRRGEVKNSLVSEGCII-SGGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRA 63

Query: 433 QVGQGYVVSAGC 444
            + +  V+  G 
Sbjct: 64  IIDKNVVIPDGV 75

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. Length = 104

>gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

 Score = 43.7 bits (104), Expect = 2e-04
 Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 37/135 (27%)

Query: 348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCR-----IGSNVKVVNSVVMN 402
           I    E+G    + P+ +L   + +GD       VIG         IG N  +    V+ 
Sbjct: 265 IRGDVEIGRDVVIEPNVILEGNTVIGD-----NVVIGPGSVIKDSVIGDNAVIKAYSVIE 319

Query: 403 HVTIGDGCSI-------QGSVICS-----------NAQLQERVA------LKDCQVGQGY 438
             T+G+G ++        G+V+ +            A + +         L D ++G+  
Sbjct: 320 GSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENV 379

Query: 439 VVSAG---CEYKGES 450
            + AG   C Y G++
Sbjct: 380 NIGAGTITCNYDGKN 394

Length = 460

>gnl|CDD|224131 COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 14/51 (27%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          V+ A G   + +P  +K +PK +LP+ ++P++ Y++E+   + I+++++V 
Sbjct: 8  VIPAAGLGTRFLP-ATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVT 57

Length = 291

>gnl|CDD|100062 cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI 406
           +I PSA++G    +GP+ ++G    +GD   ++R VI  +  +  +  V +S+V  + T+
Sbjct: 1   LIDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTV 60

Query: 407 GDGCSIQGSVICSNAQLQERVALKD 431
           G    ++   +     L + V +KD
Sbjct: 61  GRWTRLENVTV-----LGDDVTIKD 80

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 80

>gnl|CDD|213532 TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 5  VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
           V+ A G   +        VPK  L +  RP+L + L+        D +VVV
Sbjct: 2  AVIPAAGRGTRF----GSGVPKQYLELGGRPLLEHALDAFLAHPAIDEVVVV 49

Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 217

>gnl|CDD|223973 COG1043, LpxA, Acyl-[acyl carrier protein]

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 19/73 (26%)

Query: 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMN-HVT 405
           II P AE+G    +GP C                 +IG +  IG    + + VV+  H T
Sbjct: 11  IIEPGAEIGEDVKIGPFC-----------------IIGPNVEIGDGTVLKSHVVVEGHTT 53

Query: 406 IGDGCSI-QGSVI 417
           IG    I   + I
Sbjct: 54  IGRNNRIFPFASI 66

Length = 260

>gnl|CDD|100060 cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSV-IGRHCRIGSNVKVVNSVVMNHVT 405
            I   A + S   +    ++G+G ++G    ++    +G  C +G++V+V NS++M+   
Sbjct: 19  WIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTK 78

Query: 406 IGDGCSIQGSVICSNAQL 423
           +     +  SV+  N  L
Sbjct: 79  VPHLNYVGDSVLGENVNL 96

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 163

>gnl|CDD|100048 cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 373 GDKCSVKRSV-IGRHCRIGSNVKVVNSV-VMNHVTIGDGCSIQGSVICSN 420
           GD C +  +V I    +IG NVK+ ++V +   VTI D   I  +V+ +N
Sbjct: 2   GDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTN 51

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. Length = 119

>gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score = 41.8 bits (99), Expect = 5e-04
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 9/87 (10%)

Query: 345 NNIIHPSAELGSKTTV-------GPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV 396
           N  I     +G    +       GP   +G+   +G    ++  +VIG +  IG+ V++ 
Sbjct: 242 NVTIKGPVVIGEGAVIRSGTYIEGP-VYIGKNCDIGPNAYIRPYTVIGNNVHIGNAVEIK 300

Query: 397 NSVVMNHVTIGDGCSIQGSVICSNAQL 423
           NS++M    I     +  SVI  N   
Sbjct: 301 NSIIMEGTKIPHLSYVGDSVIGENCNF 327

The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393

>gnl|CDD|234670 PRK00155, ispD, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed

 Score = 41.3 bits (98), Expect = 5e-04
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 1  MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          M    ++ A G   ++      + PK  LP+  +P+L + LE        D I+VV
Sbjct: 2  MMVYAIIPAAGKGSRM----GADRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVV 53

Length = 227

>gnl|CDD|224132 COG1211, IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 34/153 (22%), Positives = 53/153 (34%), Gaps = 25/153 (16%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQ-LELSNIKDLIVVVEGA 59
           M    V+LA G   ++       VPK  L +  RP+L + LE  LE   I +++VVV   
Sbjct: 3   MMVSAVILAAGFGSRM----GNPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPE 58

Query: 60  DAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD--- 116
           D                    V  V        ++      L+  D   V   LV D   
Sbjct: 59  DDPY-----FEKLPKLSADKRVEVVKGGATRQESVYNGLQALSKYDSDWV---LVHDAAR 110

Query: 117 --VPPGAVT---AAHRRHDAVVTAMICSVPVSG 144
             + P  +        ++ A + A    +PV+ 
Sbjct: 111 PFLTPKLIKRLIELADKYGAAILA----LPVTD 139

Length = 230

>gnl|CDD|236492 PRK09382, ispDF, bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional

 Score = 41.4 bits (98), Expect = 6e-04
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 1  MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQL-ELSNIKDLIVVVEGA 59
           D  +V++A G S +     S EV K  L +  +P+  +VLE L      K+++VV+   
Sbjct: 4  SDISLVIVAAGRSTRF----SAEVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPD 59

Query: 60 DAAL 63
          D A 
Sbjct: 60 DIAY 63

Length = 378

>gnl|CDD|100053 cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

 Score = 38.6 bits (91), Expect = 7e-04
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 34/94 (36%)

Query: 353 ELGSKTTVGPHCML--------GEGSQMGDKCSV--------------------KRSVIG 384
            +G    +GP C++        G+   +G   ++                       VIG
Sbjct: 3   SIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIG 62

Query: 385 RHCRIGSNVKVVNSVVMNHVTIGDGCSI-QGSVI 417
               IG+NV     V++  VTIGDG  +  GSV+
Sbjct: 63  DDVWIGANV-----VILPGVTIGDGAVVGAGSVV 91

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. Length = 109

>gnl|CDD|237688 PRK14358, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 23/147 (15%)

Query: 3   FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV----EG 58
             VV+LA G   ++       +PK L PVA RP++++ ++       + ++VV     E 
Sbjct: 8   LDVVILAAGQGTRM----KSALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQ 63

Query: 59  ADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK--DVLVVSGD--LV 114
            +AAL+  G           V  A   + +GT  A  + A  LT    D+LV+ GD  L+
Sbjct: 64  VEAALQGSG-----------VAFARQEQQLGTGDAFLSGASALTEGDADILVLYGDTPLL 112

Query: 115 SDVPPGAVTAAHRRHDAVVTAMICSVP 141
                 A+ A HR   + +T +   +P
Sbjct: 113 RPDTLRALVADHRAQGSAMTILTGELP 139

Length = 481

>gnl|CDD|223188 COG0110, WbbJ, Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

 Score = 39.9 bits (93), Expect = 8e-04
 Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 16/97 (16%)

Query: 327 RDVIGEANHLSGYNFS-AQNN--IIHPSAELGSKTTVGPHCMLGEGS--------QMGDK 375
           R  +GE N   G       N   ++     +G    VGP+  +   S         +G  
Sbjct: 60  RIDLGEKNLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGAL 119

Query: 376 CSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI 412
                  IG    IG+       V++  VTIG+G  I
Sbjct: 120 VGAGPVTIGEDVWIGAGA-----VILPGVTIGEGAVI 151

Length = 190

>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]

 Score = 41.1 bits (97), Expect = 9e-04
 Identities = 20/129 (15%), Positives = 46/129 (35%), Gaps = 27/129 (20%)

Query: 343 AQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV-KRSVIGRHCRIGSNVKV------ 395
               +I  +  +G+   +G +  +G+G+ +    ++    VIG +  I S   +      
Sbjct: 127 GAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFG 186

Query: 396 --------VNSVVMNHVTIGDGCSI-----------QGSVICSNAQLQERVAL-KDCQVG 435
                   V    +  V IGD   I             +VI    ++   V +  + ++G
Sbjct: 187 YAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIG 246

Query: 436 QGYVVSAGC 444
           +  +++   
Sbjct: 247 EHCIIAGQV 255

Length = 338

>gnl|CDD|234824 PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 41.0 bits (97), Expect = 9e-04
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 377 SVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVI 417
            V+RSV+    R+ S   V +SV++  V +G  C ++  VI
Sbjct: 340 VVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVI 380

Length = 425

>gnl|CDD|237687 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 41.3 bits (97), Expect = 9e-04
 Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 16/117 (13%)

Query: 347 IIHPSAELGSKTTVGPHCMLG-----EGSQMGDKCSVKRSVIGRHCRIGSNVKV------ 395
           II+P   +  KT +G  C +G        ++G+   + RS   +   I  +V V      
Sbjct: 263 IIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEK-SVIEDDVSVGPFSRL 321

Query: 396 -VNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAG---CEYKG 448
              +V+   V IG+   I+ S I  N + Q    L D  VG+   + AG   C Y G
Sbjct: 322 REGTVLKKSVKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDG 378

Length = 448

>gnl|CDD|100062 cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 383 IGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSA 442
           IG+  +IG NV     V+  +VTIGDG  +Q  VI SN+ +++   +K   VG    V  
Sbjct: 8   IGKTAKIGPNV-----VIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGR 62

Query: 443 GCEYKG 448
               + 
Sbjct: 63  WTRLEN 68

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 80

>gnl|CDD|130175 TIGR01105, galF, UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 14/63 (22%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 1  MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           + + V+   G    ++P  +K +PK +LP+ ++P++ Y+++++  + IK++++V   + 
Sbjct: 2  TNLKAVIPVAGLGMHMLP-ATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASK 60

Query: 61 AAL 63
           A+
Sbjct: 61 NAV 63

GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose [Regulatory functions, Protein interactions]. Length = 297

>gnl|CDD|224979 COG2068, COG2068, Uncharacterized MobA-related protein [General function prediction only]

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 20/127 (15%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
            VVLA G S ++        PK L P+  +P++    E    + +  +IVV     A   
Sbjct: 8   AVVLAAGRSSRM------GQPKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRVA--- 58

Query: 65  VGGWISAAYVDRLHVEVATVPE-DVGTAGALRAIAHHLTAKD--VLVVSGDLVSDVPPGA 121
                  A + +L V V   P+   G + +L+A      A+   V+++ GD+     P  
Sbjct: 59  ---EAVEALLAQLGVTVVVNPDYAQGLSTSLKAGLRAADAEGDGVVLMLGDM-----PQV 110

Query: 122 VTAAHRR 128
             A  RR
Sbjct: 111 TPATVRR 117

Length = 199

>gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 12/109 (11%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
           VV+LA G   ++      ++PK L P+A +P+L +V++       + + VV  G  A   
Sbjct: 3   VVILAAGKGTRM----KSDLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVY-GHGAEQ- 56

Query: 65  VGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK-DVLVVSGD 112
               +  A  +R  V      E +GT  A+      L    DVLV+ GD
Sbjct: 57  ----VRKALANR-DVNWVLQAEQLGTGHAVLQALPFLPDDGDVLVLYGD 100

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451

>gnl|CDD|189409 pfam00132, Hexapep, Bacterial transferase hexapeptide (six repeats)

 Score = 35.4 bits (83), Expect = 0.002
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 6/38 (15%)

Query: 381 SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVI 417
           +VIG +  IG NV     V+   V IGD   I  G VI
Sbjct: 2   TVIGENVLIGPNV-----VIGGGVIIGDNVIIGAGVVI 34

Length = 36

>gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

 Score = 38.5 bits (91), Expect = 0.002
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 34/102 (33%)

Query: 324 DINRDVIGEANHLSGYNFSAQNN-IIHPSAE----LGSKTTVGPHCMLGEGSQMGDKCSV 378
           D+N   IGE         + Q+  ++H        +G   TVG   +L            
Sbjct: 35  DVNPIRIGE-------RTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVL------------ 75

Query: 379 KRSVIGRH-CRIGSNVKV-VNSVVMNHVTIGDGCSIQ-GSVI 417
                  H C IG N  + + +++++   IG G  +  GS++
Sbjct: 76  -------HGCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLV 110

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. Length = 153

>gnl|CDD|215133 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase

 Score = 39.1 bits (92), Expect = 0.004
 Identities = 31/167 (18%), Positives = 62/167 (37%), Gaps = 56/167 (33%)

Query: 318 SIQAFMDINRDVIGEANHLSGYNFSAQNNIIH-------PSAELGSK---TTVGPHCMLG 367
           +I++F + N   +        ++F   +  I+       PS     +   + +   C L 
Sbjct: 269 TIKSFYEAN---LALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSIISHGCFLR 325

Query: 368 EGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNH-------------------VTIGD 408
           E       C ++ SV+G   RIG  V++ ++V+M                     + IG+
Sbjct: 326 E-------CKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGE 378

Query: 409 GCSIQGSVICSNAQLQERVALKDCQV------------GQGYVVSAG 443
              I+ ++I  NA    R+  K+  +             +GY + +G
Sbjct: 379 NTKIRNAIIDKNA----RIG-KNVVIINKDGVQEADREEEGYYIRSG 420

Length = 436

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	456
KOG1462	433	consensus Translation initiation factor 2B, gamma	100.0
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	100.0
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	100.0
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	100.0
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
KOG1461	673	consensus Translation initiation factor 2B, epsilo	100.0
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
PLN02241	436	glucose-1-phosphate adenylyltransferase	100.0
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	100.0
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	100.0
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	100.0
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	100.0
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	100.0
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	100.0
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
COG1209	286	RfbA dTDP-glucose pyrophosphorylase [Cell envelope	100.0
TIGR01105	297	galF UTP-glucose-1-phosphate uridylyltransferase,	100.0
PF00483	248	NTP_transferase: Nucleotidyl transferase This Pros	100.0
cd06425	233	M1P_guanylylT_B_like_N N-terminal domain of the M1	99.97
cd06428	257	M1P_guanylylT_A_like_N N-terminal domain of M1P_gu	99.97
PRK15480	292	glucose-1-phosphate thymidylyltransferase RfbA; Pr	99.97
PRK10122	297	GalU regulator GalF; Provisional	99.97
cd04198	214	eIF-2B_gamma_N The N-terminal domain of gamma subu	99.97
cd02538	240	G1P_TT_short G1P_TT_short is the short form of glu	99.97
TIGR01207	286	rmlA glucose-1-phosphate thymidylyltransferase, sh	99.97
cd04197	217	eIF-2B_epsilon_N The N-terminal domain of epsilon	99.97
TIGR02623	254	G1P_cyt_trans glucose-1-phosphate cytidylyltransfe	99.97
cd02541	267	UGPase_prokaryotic Prokaryotic UGPase catalyses th	99.96
cd04189	236	G1P_TT_long G1P_TT_long represents the long form o	99.96
TIGR01099	260	galU UTP-glucose-1-phosphate uridylyltransferase.	99.96
cd06422	221	NTP_transferase_like_1 NTP_transferase_like_1 is a	99.96
PRK13389	302	UTP--glucose-1-phosphate uridylyltransferase subun	99.96
cd02524	253	G1P_cytidylyltransferase G1P_cytidylyltransferase	99.95
cd02507	216	eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma	99.95
cd06426	220	NTP_transferase_like_2 NTP_trnasferase_like_2 is a	99.95
cd04181	217	NTP_transferase NTP_transferases catalyze the tran	99.95
cd06915	223	NTP_transferase_WcbM_like WcbM_like is a subfamily	99.95
cd04183	231	GT2_BcE_like GT2_BcbE_like is likely involved in t	99.92
COG1210	291	GalU UDP-glucose pyrophosphorylase [Cell envelope	99.92
cd02508	200	ADP_Glucose_PP ADP-glucose pyrophosphorylase is in	99.91
cd02509	274	GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf	99.91
cd02523	229	PC_cytidylyltransferase Phosphocholine cytidylyltr	99.91
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	99.87
cd02540	229	GT2_GlmU_N_bac N-terminal domain of bacterial GlmU	99.87
COG0836	333	{ManC} Mannose-1-phosphate guanylyltransferase [Ce	99.83
cd02517	239	CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th	99.83
PRK05450	245	3-deoxy-manno-octulosonate cytidylyltransferase; P	99.82
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	99.79
PRK13368	238	3-deoxy-manno-octulosonate cytidylyltransferase; P	99.79
COG1213	239	Predicted sugar nucleotidyltransferases [Cell enve	99.69
PLN02917	293	CMP-KDO synthetase	99.66
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.65
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.63
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.62
PF12804	160	NTP_transf_3: MobA-like NTP transferase domain; PD	99.61
COG4750	231	LicC CTP:phosphocholine cytidylyltransferase invol	99.57
TIGR00454	183	conserved hypothetical protein TIGR00454. At this	99.56
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.56
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.56
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	99.56
PRK00155	227	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	99.54
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.54
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	99.54
PRK13627	196	carnitine operon protein CaiE; Provisional	99.54
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.53
TIGR00453	217	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	99.53
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.53
TIGR00466	238	kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe	99.53
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	99.52
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	99.52
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.52
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.51
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.5
cd02516	218	CDP-ME_synthetase CDP-ME synthetase is involved in	99.49
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	99.49
PLN02296	269	carbonate dehydratase	99.49
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	99.49
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.48
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.48
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	99.48
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.47
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	99.47
cd04182	186	GT_2_like_f GT_2_like_f is a subfamily of the glyc	99.46
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	99.46
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.45
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.45
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	99.45
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	99.44
PLN02472	246	uncharacterized protein	99.44
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.44
PRK09382	378	ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp	99.44
TIGR03310	188	matur_ygfJ molybdenum hydroxylase accessory protei	99.44
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.43
COG2266	177	GTP:adenosylcobinamide-phosphate guanylyltransfera	99.43
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	99.43
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	99.43
PRK13385	230	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	99.42
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.42
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	99.42
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	99.42
cd02513	223	CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-	99.42
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.42
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	99.41
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	99.4
COG1212	247	KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase	99.4
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	99.39
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.39
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	99.39
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.39
PLN02296	269	carbonate dehydratase	99.39
KOG1461	673	consensus Translation initiation factor 2B, epsilo	99.39
cd02503	181	MobA MobA catalyzes the formation of molybdopterin	99.39
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.38
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	99.38
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.37
PLN02728	252	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	99.37
COG1043	260	LpxA Acyl-[acyl carrier protein]	99.36
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	99.36
PLN02472	246	uncharacterized protein	99.35
TIGR03202	190	pucB xanthine dehydrogenase accessory protein pucB	99.35
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.35
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.35
PRK00317	193	mobA molybdopterin-guanine dinucleotide biosynthes	99.35
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	99.35
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	99.34
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.34
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	99.34
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.34
PRK02726	200	molybdopterin-guanine dinucleotide biosynthesis pr	99.34
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.34
PF01128	221	IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly	99.33
PRK13627	196	carnitine operon protein CaiE; Provisional	99.33
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	99.33
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	99.32
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.32
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.32
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.31
TIGR02665	186	molyb_mobA molybdopterin-guanine dinucleotide bios	99.31
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	99.3
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.3
COG1211	230	IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt	99.3
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.29
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.28
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.28
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.28
TIGR03584	222	PseF pseudaminic acid CMP-transferase. The sequenc	99.27
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.27
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	99.26
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	99.26
KOG1462	433	consensus Translation initiation factor 2B, gamma	99.26
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.26
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.26
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.25
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.25
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.25
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.23
COG2068	199	Uncharacterized MobA-related protein [General func	99.23
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	99.22
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	99.22
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.18
COG0746	192	MobA Molybdopterin-guanine dinucleotide biosynthes	99.18
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	99.14
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.12
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.12
PRK10092	183	maltose O-acetyltransferase; Provisional	99.11
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	99.1
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	99.1
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	99.09
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	99.07
PRK10191	146	putative acyl transferase; Provisional	99.06
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	99.06
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	99.05
PRK00560	196	molybdopterin-guanine dinucleotide biosynthesis pr	99.04
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	99.04
cd02518	233	GT2_SpsF SpsF is a glycosyltrnasferase implicated	99.04
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	99.04
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	99.02
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	99.02
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	99.01
COG1043	260	LpxA Acyl-[acyl carrier protein]	99.0
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	99.0
PLN02694	294	serine O-acetyltransferase	98.99
PRK10502	182	putative acyl transferase; Provisional	98.99
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	98.99
PRK14500	346	putative bifunctional molybdopterin-guanine dinucl	98.99
PRK11132	273	cysE serine acetyltransferase; Provisional	98.99
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	98.98
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	98.98
PRK10502	182	putative acyl transferase; Provisional	98.97
PLN02357	360	serine acetyltransferase	98.93
PRK11132	273	cysE serine acetyltransferase; Provisional	98.93
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	98.92
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	98.92
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	98.91
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	98.91
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	98.9
PLN02241	436	glucose-1-phosphate adenylyltransferase	98.9
PLN02694	294	serine O-acetyltransferase	98.88
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	98.88
COG1083	228	NeuA CMP-N-acetylneuraminic acid synthetase [Cell	98.88
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	98.86
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	98.86
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	98.86
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	98.85
PRK10191	146	putative acyl transferase; Provisional	98.84
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	98.84
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	98.84
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	98.84
PLN02739	355	serine acetyltransferase	98.81
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	98.8
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	98.78
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	98.76
cd04180	266	UGPase_euk_like Eukaryotic UGPase-like includes UD	98.75
PLN02739	355	serine acetyltransferase	98.74
PF02348	217	CTP_transf_3: Cytidylyltransferase; InterPro: IPR0	98.69
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	98.69
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	98.68
PLN02357	360	serine acetyltransferase	98.65
KOG3121	184	consensus Dynactin, subunit p25 [Cytoskeleton]	98.63
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	98.6
PRK10092	183	maltose O-acetyltransferase; Provisional	98.6
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	98.59
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	98.58
KOG3121	184	consensus Dynactin, subunit p25 [Cytoskeleton]	98.5
cd04193	323	UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala	98.49
KOG4042	190	consensus Dynactin subunit p27/WS-3, involved in t	98.44
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	98.44
COG1861	241	SpsF Spore coat polysaccharide biosynthesis protei	98.43
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	98.31
PTZ00339	482	UDP-N-acetylglucosamine pyrophosphorylase; Provisi	98.24
KOG4750	269	consensus Serine O-acetyltransferase [Amino acid t	98.21
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	98.16
KOG4042	190	consensus Dynactin subunit p27/WS-3, involved in t	98.11
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	98.09
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	98.03
PLN02474	469	UTP--glucose-1-phosphate uridylyltransferase	97.98
KOG4750	269	consensus Serine O-acetyltransferase [Amino acid t	97.88
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	97.81
PRK00576	178	molybdopterin-guanine dinucleotide biosynthesis pr	97.72
COG4801	277	Predicted acyltransferase [General function predic	97.7
cd00897	300	UGPase_euk Eukaryotic UGPase catalyses the synthes	97.52
COG4801	277	Predicted acyltransferase [General function predic	97.34
PF14602	34	Hexapep_2: Hexapeptide repeat of succinyl-transfer	97.08
PLN02435	493	probable UDP-N-acetylglucosamine pyrophosphorylase	96.78
PRK13412	974	fkp bifunctional fucokinase/L-fucose-1-P-guanylylt	96.72
PF01704	420	UDPGP: UTP--glucose-1-phosphate uridylyltransferas	96.71
TIGR03552	195	F420_cofC 2-phospho-L-lactate guanylyltransferase	96.55
cd06424	315	UGGPase UGGPase catalyzes the synthesis of UDP-Glu	96.22
COG4284	472	UDP-glucose pyrophosphorylase [Carbohydrate transp	96.19
PF07959	414	Fucokinase: L-fucokinase; InterPro: IPR012887 In t	96.03
PLN02830	615	UDP-sugar pyrophosphorylase	95.59
cd00761	156	Glyco_tranf_GTA_type Glycosyltransferase family A	95.55
PF07959	414	Fucokinase: L-fucokinase; InterPro: IPR012887 In t	95.21
PF00535	169	Glycos_transf_2: Glycosyl transferase family 2; In	94.38
cd04195	201	GT2_AmsE_like GT2_AmsE_like is involved in exopoly	88.0
cd04186	166	GT_2_like_c Subfamily of Glycosyltransferase Famil	87.92
PF01983	217	CofC: Guanylyl transferase CofC like; InterPro: IP	87.84
cd04179	185	DPM_DPG-synthase_like DPM_DPG-synthase_like is a m	87.26
PRK13412	974	fkp bifunctional fucokinase/L-fucose-1-P-guanylylt	86.78
cd06423	180	CESA_like CESA_like is the cellulose synthase supe	85.05
cd04188	211	DPG_synthase DPG_synthase is involved in protein N	83.54
cd06439	251	CESA_like_1 CESA_like_1 is a member of the cellulo	83.51
cd06442	224	DPM1_like DPM1_like represents putative enzymes si	83.11
PF04519	101	Bactofilin: Polymer-forming cytoskeletal; InterPro	83.08
PRK10073	328	putative glycosyl transferase; Provisional	81.61
cd06427	241	CESA_like_2 CESA_like_2 is a member of the cellulo	81.52
cd04184	202	GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot	80.93

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.5e-56  Score=411.94  Aligned_cols=414  Identities=33%  Similarity=0.575  Sum_probs=322.6

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |+|||||+|||.|+||--+ +...||||||++|+|||+|+|.+|.++|+++++|++.+.+ .+++++.+.+...-++..-
T Consensus         8 ~efqavV~a~~ggt~~p~~-~~~~pKaLLPIgn~PMi~YpL~~L~~~gfteiiVv~~e~e-~~~i~~al~~~~~l~~~~~   85 (433)
T KOG1462|consen    8 SEFQAVVLAGGGGTRMPEV-TSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDE-KLDIESALGSNIDLKKRPD   85 (433)
T ss_pred             HHhhhheeecCCceechhh-hhhcchhhcccCCcceeeeehhHHHhcCCeEEEEEecHHH-HHHHHHHHhcCCccccccc
Confidence            3689999999999999666 8899999999999999999999999999999999998654 3577877765443333322


Q ss_pred             EEEccC----CcChHHHHHHHHhcCCCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCccc
Q 012817           81 VATVPE----DVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK  156 (456)
Q Consensus        81 ~~~~~~----~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~  156 (456)
                      ++..+.    ..||+++|+.....+..+||+++.||++++.++..++++++..++.+.+++....    +.....|.+.+
T Consensus        86 ~v~ip~~~~~d~gtadsLr~Iy~kikS~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~----s~~~~pgqk~k  161 (433)
T KOG1462|consen   86 YVEIPTDDNSDFGTADSLRYIYSKIKSEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNAL----SEVPIPGQKGK  161 (433)
T ss_pred             EEEeecccccccCCHHHHhhhhhhhccCCEEEEecccccCCCcHHHHHHHhccChhHhHHhcccc----ccccccCcccc
Confidence            333332    4699999999999998889999999999999999999999998888776666322    12222333322


Q ss_pred             CCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCccccccccc
Q 012817          157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQD  236 (456)
Q Consensus       157 ~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~~~s~~~d  236 (456)
                        +...+.++..+++++++.+.....+.++++.++..++|++|+++..+++.++++|+|++++++ ++.+.++..||+.|
T Consensus       162 --~k~~~d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d-~l~~~~sisSfk~~  238 (433)
T KOG1462|consen  162 --KKQARDVIGINEDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVID-LLSEKESISSFKAD  238 (433)
T ss_pred             --cccccceeeeccccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHH-HHhcCCcceeeccc
Confidence              234568899999999988887766788889999999999999999999999999999999996 56777788999999


Q ss_pred             hhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcchhhcc
Q 012817          237 VLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRL  316 (456)
Q Consensus       237 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~~~i  316 (456)
                      |+|++++.|++..+...+.-.         .-.        +.+... +    +.|.-...+..+|++|..+....+.++
T Consensus       239 f~P~lvkkQ~q~~~~~~~~~~---------~~l--------~t~~~~-~----~d~~~~~~d~ik~y~~~~p~e~~~~ra  296 (433)
T KOG1462|consen  239 FLPYLVKKQFQKNPPLKKNET---------SIL--------PTPNLN-N----PDGIHSPDDRIKCYAYILPTESLFVRA  296 (433)
T ss_pred             ccchhhhhhhhcCCCcccccc---------ccc--------CCcccc-C----cccccCcccceeeeEEEccCccceEEe
Confidence            999999999876544321100         000        000100 0    000000011368899999988888899


Q ss_pred             cCHHHHHHHhHhh-hccccccCCCcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEE
Q 012817          317 NSIQAFMDINRDV-IGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKV  395 (456)
Q Consensus       317 ~~~~~y~~~~~~~-l~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i  395 (456)
                      +++..|+++|++- +..-+   .     ....+...+..  ...+|..++++++|.|++++.|+.|+||.+|.||+.++|
T Consensus       297 NtL~~y~eiN~~k~~~~l~---~-----e~~~~k~~~~~--~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v  366 (433)
T KOG1462|consen  297 NTLLSYMEINRDKKLKKLC---S-----EAKFVKNYVKK--VALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKV  366 (433)
T ss_pred             cchHHHHhhhHHHHHHHhc---c-----ccccccchhhh--eeccchhhccCCCceecccceeeeeeecCCccccCCcEE
Confidence            9999999999632 11110   0     01111111111  145678899999999999999999999999999999999


Q ss_pred             eCeEECCCCEECCCcEEcCeEECCCCEECCCcEecCeEECCCCEECCCcEEcCCeeeecc
Q 012817          396 VNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLARKE  455 (456)
Q Consensus       396 ~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~~~~~~~~~~~~  455 (456)
                      .+|+||+||+||+++.|+|||||.++.||+|+.|.+|.||+|.+|.++....++++...+
T Consensus       367 ~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~nC~Ig~~yvVeak~~~~~ev~~~~~  426 (433)
T KOG1462|consen  367 ANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLKNCIIGPGYVVEAKGKHGGEVLVSNE  426 (433)
T ss_pred             EeeEeecCcEecCCcceecceecccceecCCCeeeeeEecCCcEEcccccccccEeeccc
Confidence            999999999999999999999999999999999999999999999999999999987654

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=7.2e-50  Score=378.01  Aligned_cols=335  Identities=24%  Similarity=0.386  Sum_probs=267.4

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCc-chHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhh---hccCcc
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISA---AYVDRL   77 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gk-pli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~---~~~~~~   77 (456)
                      ++.|+|||||.|+||.|| |..++||-+||+|| +||+++|+++.++|+.+|.|++.++..+  +..|++.   |.+++.
T Consensus         5 ~~laiILaGg~G~rL~~L-T~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~S--L~~Hi~~G~~w~l~~~   81 (393)
T COG0448           5 NVLAIILAGGRGSRLSPL-TKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHS--LNDHIGRGWPWDLDRK   81 (393)
T ss_pred             ceEEEEEcCCCCCccchh-hhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhH--HHHHhhCCCccccccc
Confidence            467999999999999999 99999999999998 8999999999999999999999877654  3333332   323332


Q ss_pred             ceEEEEcc------C---CcChHHHHHHHHhcC---CCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCC
Q 012817           78 HVEVATVP------E---DVGTAGALRAIAHHL---TAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGL  145 (456)
Q Consensus        78 ~i~~~~~~------~---~~gt~~al~~~~~~l---~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~  145 (456)
                      .-.+...+      .   ..||++|+++-+..+   ..++++++.||++++.|++.|+++|.+.+|++|+++.+++..+ 
T Consensus        82 ~~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~e-  160 (393)
T COG0448          82 NGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREE-  160 (393)
T ss_pred             cCcEEEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECChHh-
Confidence            22222211      1   258999999865443   4578999999999999999999999999999999999998654 


Q ss_pred             ccCCCCCCcccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHh
Q 012817          146 SEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (456)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~  225 (456)
                                    +++||++.+|++++++. +.|++..+                .....++++|+|+|++++|.++|.
T Consensus       161 --------------as~fGim~~D~~~~i~~-F~eKp~~~----------------~~~~~laSMgiYIf~~~~L~~~L~  209 (393)
T COG0448         161 --------------ASRFGVMNVDENGRIIE-FVEKPADG----------------PPSNSLASMGIYIFNTDLLKELLE  209 (393)
T ss_pred             --------------hhhcCceEECCCCCEEe-eeeccCcC----------------CcccceeeeeeEEEcHHHHHHHHH
Confidence                          66799999999998654 44322210                012237999999999999999986


Q ss_pred             cC----ccccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCccee
Q 012817          226 QK----DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHK  301 (456)
Q Consensus       226 ~~----~~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (456)
                      +.    .+..+|.+|+||.+++++                                                       .
T Consensus       210 ~~~~~~~~~~DfgkdiIp~~~~~~-------------------------------------------------------~  234 (393)
T COG0448         210 EDAKDPNSSHDFGKDIIPKLLERG-------------------------------------------------------K  234 (393)
T ss_pred             HHhcccCccccchHHHHHHHHhcC-------------------------------------------------------C
Confidence            42    346889999999987643                                                       2


Q ss_pred             eEEEEecCcchhhcccCHHHHHHHhHhhhccccccCCC----cccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCe
Q 012817          302 CCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGY----NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCS  377 (456)
Q Consensus       302 ~~~yi~~~~~~~~~i~~~~~y~~~~~~~l~~~~~~~~~----~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~  377 (456)
                      +++|  ++.+||++++|+++||++|++++...+.++.+    +..+. .-..|++.+..+..+ .+++|++||.|..  +
T Consensus       235 v~AY--~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~-~~~~pPak~~~~s~v-~nSLv~~GciI~G--~  308 (393)
T COG0448         235 VYAY--EFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTK-NKNLPPAKFVNDSEV-SNSLVAGGCIISG--T  308 (393)
T ss_pred             EEEE--eccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeec-CCCCCCceEecCceE-eeeeeeCCeEEEe--E
Confidence            4566  78999999999999999999999866555432    12222 223567777666665 7899999999986  8


Q ss_pred             EeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecCe
Q 012817          378 VKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDC  432 (456)
Q Consensus       378 i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~  432 (456)
                      |.+|+|+.++.|+++|.|.+|+||++|.||++|.|++|||.++|.|++|++|.+.
T Consensus       309 V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~v~I~~g~~i~~~  363 (393)
T COG0448         309 VENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGGD  363 (393)
T ss_pred             EEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCCcEeCCCcEEcCC
Confidence            9999999999999999999999999999999999999999999999999888644

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=1.1e-48  Score=356.21  Aligned_cols=329  Identities=21%  Similarity=0.389  Sum_probs=230.3

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~   81 (456)
                      .|+||||-||.|+||+|| |.++|||++|++++|||+|.+++|.++|+++|++++++...  .+..++...+..++.+++
T Consensus         9 ~vkaiILvGG~GTRLrPL-T~t~pKPlVpfgn~pmI~hqieal~nsGi~~I~la~~y~s~--sl~~~~~k~y~~~lgVei   85 (371)
T KOG1322|consen    9 SVKAIILVGGYGTRLRPL-TLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNSE--SLNRHLSKAYGKELGVEI   85 (371)
T ss_pred             ceeEEEEecCCCceeece-eccCCCcccccCcchhhHHHHHHHHhCCCcEEEEEEecCcH--HHHHHHHHHhhhccceEE
Confidence            489999999999999999 99999999999999999999999999999999999987643  222223222333455655


Q ss_pred             EE--ccCCcChHHHHHHHHhcC---CCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCccc
Q 012817           82 AT--VPEDVGTAGALRAIAHHL---TAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK  156 (456)
Q Consensus        82 ~~--~~~~~gt~~al~~~~~~l---~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~  156 (456)
                      ..  +.++.++++.+..+.+.+   .+.+|+|+++|++++.++.+|+++|++++++.|+++.++..              
T Consensus        86 ~~s~eteplgtaGpl~laR~~L~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vde--------------  151 (371)
T KOG1322|consen   86 LASTETEPLGTAGPLALARDFLWVFEDAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVDE--------------  151 (371)
T ss_pred             EEEeccCCCcccchHHHHHHHhhhcCCCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEeccC--------------
Confidence            54  556666666665555554   23379999999999999999999999999999999987752              


Q ss_pred             CCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCccccccccc
Q 012817          157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQD  236 (456)
Q Consensus       157 ~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~~~s~~~d  236 (456)
                         |+.||++..|+++.++.++.|     |+.             ...++.+|+|+|+|++++|..++..   -.|+.++
T Consensus       152 ---pSkyGvv~~d~~~grV~~F~E-----KPk-------------d~vsnkinaGiYi~~~~vL~ri~~~---ptSiekE  207 (371)
T KOG1322|consen  152 ---PSKYGVVVIDEDTGRVIRFVE-----KPK-------------DLVSNKINAGIYILNPEVLDRILLR---PTSIEKE  207 (371)
T ss_pred             ---ccccceEEEecCCCceeEehh-----Cch-------------hhhhccccceEEEECHHHHhHhhhc---ccchhhh
Confidence               677999999996666677764     321             2246778999999999999988632   3669999


Q ss_pred             hhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcchhhcc
Q 012817          237 VLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRL  316 (456)
Q Consensus       237 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~~~i  316 (456)
                      ++|.+++.                                                       ++.++|  ..++||.++
T Consensus       208 ifP~~a~~-------------------------------------------------------~~l~a~--~l~gfWmDI  230 (371)
T KOG1322|consen  208 IFPAMAEE-------------------------------------------------------HQLYAF--DLPGFWMDI  230 (371)
T ss_pred             hhhhhhhc-------------------------------------------------------CceEEE--ecCchhhhc
Confidence            99987653                                                       234455  568999999


Q ss_pred             cCHHHHHHHhHhhhccccccCC-----CcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECC
Q 012817          317 NSIQAFMDINRDVIGEANHLSG-----YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGS  391 (456)
Q Consensus       317 ~~~~~y~~~~~~~l~~~~~~~~-----~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~  391 (456)
                      +++++|++....+++..+....     ...+..+..+.+.+.+|.+|.|++|+                 +||.+|+|++
T Consensus       231 Gqpkdf~~g~~~Yl~s~~~~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~v-----------------vIG~r~~i~~  293 (371)
T KOG1322|consen  231 GQPKDFLTGFSFYLRSLPKYTSPRLLPGSKIVGNVLVDSIASIGENCSIGPNV-----------------VIGPRVRIED  293 (371)
T ss_pred             CCHHHHHHHHHHHHhhCcccCCccccCCccccccEeeccccccCCccEECCCc-----------------eECCCcEecC
Confidence            9999999997776653322110     01111233333444444333333333                 5555666666


Q ss_pred             CcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEec-CeEECCCCEECCCcE
Q 012817          392 NVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK-DCQVGQGYVVSAGCE  445 (456)
Q Consensus       392 ~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~  445 (456)
                      +++|.+|+++.++.++..++|..++++.++.||.++.|+ .|+||++++|..--.
T Consensus       294 gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV~V~d~~~  348 (371)
T KOG1322|consen  294 GVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNVIVADEDY  348 (371)
T ss_pred             ceEEEeeEEEccceechhHHHHhhhccccccccCceEEecccEeccceEEecccc
Confidence            666666666666666666666666666666666555554 355555555544333

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.1e-47  Score=375.80  Aligned_cols=313  Identities=23%  Similarity=0.437  Sum_probs=224.6

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~   81 (456)
                      .|+|||||||.|+||+|+ |..+||||+|++|||||+|+|++|.++|++++++.+++.  .+++++++.+.+....++.+
T Consensus         1 ~mkavILagG~GtRLrPl-T~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~--~~~i~~~~~d~~~~~~~I~y   77 (358)
T COG1208           1 PMKAVILAGGYGTRLRPL-TDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYL--GEQIEEYFGDGEGLGVRITY   77 (358)
T ss_pred             CceEEEEeCCcccccccc-ccCCCcccceeCCccHHHHHHHHHHHCCCcEEEEEeccc--hHHHHHHHhcccccCCceEE
Confidence            489999999999999999 999999999999999999999999999999999999876  45788888775434456888


Q ss_pred             EEccCCcChHHHHHHHHhcCCCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCC
Q 012817           82 ATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPG  161 (456)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (456)
                      +.+.++.||+++|+.+.+.+..++|++++||.+++.++..++++|+++++.+++.....+.                 +.
T Consensus        78 ~~e~~~lGTag~l~~a~~~l~~~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~-----------------~~  140 (358)
T COG1208          78 VVEKEPLGTAGALKNALDLLGGDDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLD-----------------PS  140 (358)
T ss_pred             EecCCcCccHHHHHHHHHhcCCCcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecCC-----------------CC
Confidence            8888889999999999999977899999999999999999999999998888877766542                 35


Q ss_pred             cccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCccccccccchhHHH
Q 012817          162 RYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYL  241 (456)
Q Consensus       162 ~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~~~s~~~d~l~~l  241 (456)
                      .||++.+++++..+..+.+++..+                ...++++++|+|+|++++|..+ +. ....++..|++|.+
T Consensus       141 ~~Gvv~~~~~~~~v~~f~ekp~~~----------------~~~~~~in~Giyi~~~~v~~~i-~~-~~~~~~~~~~~~~l  202 (358)
T COG1208         141 EFGVVETDDGDGRVVEFREKPGPE----------------EPPSNLINAGIYIFDPEVFDYI-EK-GERFDFEEELLPAL  202 (358)
T ss_pred             cCceEEecCCCceEEEEEecCCCC----------------CCCCceEEeEEEEECHHHhhhc-cc-CCcccchhhHHHHH
Confidence            689998885544566665432100                2357899999999999999833 32 23456667899999


Q ss_pred             hHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcchhhcccCHHH
Q 012817          242 VRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQA  321 (456)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~~~i~~~~~  321 (456)
                      ++.+.                                                      .++.|  ...+||.+++++++
T Consensus       203 ~~~~~------------------------------------------------------~v~~~--~~~g~W~dig~p~d  226 (358)
T COG1208         203 AAKGE------------------------------------------------------DVYGY--VFEGYWLDIGTPED  226 (358)
T ss_pred             HhCCC------------------------------------------------------cEEEE--EeCCeEEeCCCHHH
Confidence            87542                                                      12344  45679999999999


Q ss_pred             HHHHhHhhhccccccCCC-----------cccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEEC
Q 012817          322 FMDINRDVIGEANHLSGY-----------NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIG  390 (456)
Q Consensus       322 y~~~~~~~l~~~~~~~~~-----------~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig  390 (456)
                      |.+++..++.........           ..+.++.++++++.|++++.|++++.||++|.|++++.|.+|+|.++|.|+
T Consensus       227 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~  306 (358)
T COG1208         227 LLEANELLLRGDGKSPLGPIEEPVVIIRSAYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIG  306 (358)
T ss_pred             HHHHHHHHHhcccccccccccccccccccceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEEC
Confidence            999999887533211100           112234444444444444444444444444444444444444444444444


Q ss_pred             CCcEEeCeEECCCCEECC
Q 012817          391 SNVKVVNSVVMNHVTIGD  408 (456)
Q Consensus       391 ~~~~i~~s~i~~~~~ig~  408 (456)
                      +++.|.+|+|+.+|+||.
T Consensus       307 ~~~~i~~sIi~~~~~ig~  324 (358)
T COG1208         307 HGSYIGDSIIGENCKIGA  324 (358)
T ss_pred             CCCEEeeeEEcCCcEECC
Confidence            444444444444444444

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=1.5e-47  Score=382.27  Aligned_cols=349  Identities=22%  Similarity=0.354  Sum_probs=269.3

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCc-chHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhc---cCcc
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY---VDRL   77 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gk-pli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~---~~~~   77 (456)
                      +|+|||||||.|+||+|+ |..+||||+|++|| |||+|+|++|.++|+++++|++++.  .+.+.+++.+..   .+..
T Consensus         3 ~m~avILAaG~GtRl~pl-T~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~--~~~i~~~~~~~~~~~~~~~   79 (380)
T PRK05293          3 EMLAMILAGGQGTRLGKL-TKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQ--PLELNNHIGIGSPWDLDRI   79 (380)
T ss_pred             cEEEEEECCCCCcccchh-hcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCC--HHHHHHHHhCCCcccccCC
Confidence            499999999999999999 99999999999999 8999999999999999999999865  346677664321   1110


Q ss_pred             --ceEE----EEccC---CcChHHHHHHHHhcCC---CCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCC
Q 012817           78 --HVEV----ATVPE---DVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGL  145 (456)
Q Consensus        78 --~i~~----~~~~~---~~gt~~al~~~~~~l~---~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~  145 (456)
                        .+.+    ..+.+   +.||+++++.+.+.+.   +++|+|++||.+++.++.++++.|++.++++++++...+..+ 
T Consensus        80 ~~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~-  158 (380)
T PRK05293         80 NGGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEE-  158 (380)
T ss_pred             CCCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchhh-
Confidence              1222    22222   3799999999988875   367999999999999999999999998898888876654322 


Q ss_pred             ccCCCCCCcccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHh
Q 012817          146 SEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (456)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~  225 (456)
                                    +..|+++.+|++++ +..+.+     |+.             ...++++++|+|+|++++|..+++
T Consensus       159 --------------~~~yG~v~~d~~g~-V~~~~e-----Kp~-------------~~~~~~~~~Giyi~~~~~l~~~l~  205 (380)
T PRK05293        159 --------------ASRFGIMNTDENMR-IVEFEE-----KPK-------------NPKSNLASMGIYIFNWKRLKEYLI  205 (380)
T ss_pred             --------------ccccCEEEECCCCc-EEEEEe-----CCC-------------CCCcceeeeEEEEEcHHHHHHHHH
Confidence                          56789999987765 444543     210             112567899999999999977664


Q ss_pred             cC----ccccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCccee
Q 012817          226 QK----DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHK  301 (456)
Q Consensus       226 ~~----~~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (456)
                      +.    .+..++.+|+++++++++                                                      .+
T Consensus       206 ~~~~~~~~~~~~~~d~i~~l~~~~------------------------------------------------------~~  231 (380)
T PRK05293        206 EDEKNPNSSHDFGKNVIPLYLEEG------------------------------------------------------EK  231 (380)
T ss_pred             HHhhcCCchhhhHHHHHHHHhhcC------------------------------------------------------Ce
Confidence            31    223456678899887643                                                      23


Q ss_pred             eEEEEecCcchhhcccCHHHHHHHhHhhhccccccCC---CcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeE
Q 012817          302 CCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSG---YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV  378 (456)
Q Consensus       302 ~~~yi~~~~~~~~~i~~~~~y~~~~~~~l~~~~~~~~---~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i  378 (456)
                      +.+|  ...+||.+++++++|++++++++........   ...+.....+.+.+.|++++.| .++.|+++|.|+.  .+
T Consensus       232 v~~~--~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~Ig~~~~I~~--~v  306 (380)
T PRK05293        232 LYAY--PFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKV-KNSLVVEGCVVYG--TV  306 (380)
T ss_pred             EEEE--EeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEE-ecCEECCCCEEcc--ee
Confidence            3445  4467999999999999999988765433211   0111123345566777777777 5778888888863  56


Q ss_pred             eeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecC-----eEECCCCEECCCcEE
Q 012817          379 KRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD-----CQVGQGYVVSAGCEY  446 (456)
Q Consensus       379 ~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~-----~~i~~~~~v~~~~~~  446 (456)
                      .+|+||++|.||++|+|.+|+|+++|.||++|.|.+|+|++++.|++++.+.+     .+||+++.|++++.+
T Consensus       307 ~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~  379 (380)
T PRK05293        307 EHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGGGKEVITVIGENEVIGVGTVI  379 (380)
T ss_pred             cceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcCCCceeEEEeCCCCCCCCcEe
Confidence            78999999999999999999999999999999999999999999999999976     889999999998876

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.3e-46  Score=368.42  Aligned_cols=376  Identities=27%  Similarity=0.490  Sum_probs=308.6

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhh--hccCc-cce
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISA--AYVDR-LHV   79 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~--~~~~~-~~i   79 (456)
                      +|||++|.-..+||+|+ |...|+.|||++|.|||+|+|++|..+|+.+|+|+|+.+  +.++.+|+..  |.... +.+
T Consensus        25 LqAIllaDsf~trF~Pl-t~~~p~~LLPlaNVpmIdYtL~~L~~agV~eVfvfc~~~--~~qi~e~i~~sew~~~~~~~v  101 (673)
T KOG1461|consen   25 LQAILLADSFETRFRPL-TLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVFCSAH--AAQIIEYIEKSEWYLPMSFIV  101 (673)
T ss_pred             eEEEEEeccchhccccc-ccCCCceEeeecCchHHHHHHHHHHhcCceEEEEEeccc--HHHHHHHHhhccccccccceE
Confidence            69999999999999999 999999999999999999999999999999999999855  3466666654  33221 123


Q ss_pred             EEEEccCCcChHHHHHHHH-hcCCCCcEEEEcCCcccCCChhHHHHHHHhc-----CceEEEEEeecccCCCccCCCCCC
Q 012817           80 EVATVPEDVGTAGALRAIA-HHLTAKDVLVVSGDLVSDVPPGAVTAAHRRH-----DAVVTAMICSVPVSGLSEAGSSGA  153 (456)
Q Consensus        80 ~~~~~~~~~gt~~al~~~~-~~l~~~~~lv~~~D~i~~~~l~~~l~~~~~~-----~a~~t~~~~~~~~~~~~~~~~~~~  153 (456)
                      ..+...+.+..++++|..- +.+...+|++++||.+++.+|.+++++|+.+     ++.||+++.+...           
T Consensus       102 ~ti~s~~~~S~GDamR~id~k~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st-----------  170 (673)
T KOG1461|consen  102 VTICSGESRSVGDAMRDIDEKQLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESST-----------  170 (673)
T ss_pred             EEEcCCCcCcHHHHHHHHHhcceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEecccc-----------
Confidence            3333334588899999884 5566789999999999999999999999664     5668887766420           


Q ss_pred             cccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCcccccc
Q 012817          154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSL  233 (456)
Q Consensus       154 ~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~~~s~  233 (456)
                          +.....-++.+|+.+..++|+.+...-+....++..++...+.+.+++++.+++|-+|++.++. ++.+|++|+ .
T Consensus       171 ----~~~~~~~~~avd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~s-LF~dNFDyq-~  244 (673)
T KOG1461|consen  171 ----RETTEQVVIAVDSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLS-LFTDNFDYQ-T  244 (673)
T ss_pred             ----ccCCcceEEEEcCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHH-Hhhhcccce-e
Confidence                0122345778999998899997533334457788889999999999999999999999999997 557788898 8


Q ss_pred             ccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcchh
Q 012817          234 KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYC  313 (456)
Q Consensus       234 ~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~  313 (456)
                      +.||+.-++-+.+.                                                   +.+++.++.+...|.
T Consensus       245 r~DfV~GvL~~dil---------------------------------------------------g~kI~~~~~~~~~yA  273 (673)
T KOG1461|consen  245 RDDFVRGVLVDDIL---------------------------------------------------GYKIHVHVLSSIDYA  273 (673)
T ss_pred             hhhhhhhhhhhhhc---------------------------------------------------CCeEEEEEcChhhhh
Confidence            88998877543221                                                   156777777777799


Q ss_pred             hcccCHHHHHHHhHhhhccccc-------cCC---CcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEE
Q 012817          314 VRLNSIQAFMDINRDVIGEANH-------LSG---YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVI  383 (456)
Q Consensus       314 ~~i~~~~~y~~~~~~~l~~~~~-------~~~---~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~I  383 (456)
                      .++.++++|..+++++|.+-..       +.+   +.+...+.+-+|.+++...+.++.++.||.++.||.++.|.||+|
T Consensus       274 ~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVI  353 (673)
T KOG1461|consen  274 ARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVI  353 (673)
T ss_pred             hhhcccHHHHHHHHHHHHhhcccccccccCCCCceeeecccccccCccceehhhccccceEEecccccccCCCeeeccee
Confidence            9999999999999999875432       111   223345677789999999999999999999999999999999999


Q ss_pred             CCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEe-cCeEECCCCEECCCcEEcCC
Q 012817          384 GRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKGE  449 (456)
Q Consensus       384 g~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~~~  449 (456)
                      |.||.||.+++|.+|.||.+|+||+||.|++|+|+++|.|++++.+ ++|+||.+++|+++.++.-.
T Consensus       354 G~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~~~VVv~~~~~l~~n  420 (673)
T KOG1461|consen  354 GANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVLPKN  420 (673)
T ss_pred             cCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCcccCCCcEEeeeeEeCCCcccccc
Confidence            9999999999999999999999999999999999999999999999 58999999999998876654

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=7e-46  Score=372.17  Aligned_cols=353  Identities=21%  Similarity=0.317  Sum_probs=254.0

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCc-chHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhc-cCccce
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-VDRLHV   79 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gk-pli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~-~~~~~i   79 (456)
                      +|+|||||||.|+||+|| |..+||||+|++|| |||+|+|++|.++|+++++|++++.  .+.+.+|+.+.+ ..++..
T Consensus         5 ~~~avILAaG~GtRl~PL-T~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~--~~~i~~~~~~~~~~~~~~~   81 (407)
T PRK00844          5 KVLAIVLAGGEGKRLMPL-TADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYK--SHSLDRHISQTWRLSGLLG   81 (407)
T ss_pred             ceEEEEECCCCCCccchh-hcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccC--HHHHHHHHHhCcCccccCC
Confidence            489999999999999999 99999999999999 9999999999999999999999866  346666664321 222222


Q ss_pred             EEEEc-c--C------CcChHHHHHHHHhcCCC---CcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCcc
Q 012817           80 EVATV-P--E------DVGTAGALRAIAHHLTA---KDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSE  147 (456)
Q Consensus        80 ~~~~~-~--~------~~gt~~al~~~~~~l~~---~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~  147 (456)
                      .++.. +  +      +.||+++++.+.+.+.+   ++|++++||.+++.++.+++++|++.++++|+++...+.++   
T Consensus        82 ~~~~~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~---  158 (407)
T PRK00844         82 NYITPVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREE---  158 (407)
T ss_pred             CeEEECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchHH---
Confidence            33321 1  1      48999999999888743   34999999999999999999999999999988887654222   


Q ss_pred             CCCCCCcccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhc-
Q 012817          148 AGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ-  226 (456)
Q Consensus       148 ~~~~~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~-  226 (456)
                                  +..|+++.+|++++ +..+.+++...+..  +         ....+.++++|+|+|++++|..++++ 
T Consensus       159 ------------~~~~Gvv~~d~~g~-v~~~~eKp~~~~~~--~---------~~~~~~~~~~Giyi~~~~~l~~~l~~~  214 (407)
T PRK00844        159 ------------ASAFGVIEVDPDGR-IRGFLEKPADPPGL--P---------DDPDEALASMGNYVFTTDALVDALRRD  214 (407)
T ss_pred             ------------cccCCEEEECCCCC-EEEEEECCCCcccc--c---------CCCCCcEEEeEEEEEeHHHHHHHHHHh
Confidence                        56799999998776 44554432111100  0         01135689999999999998665553 


Q ss_pred             ---CccccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeE
Q 012817          227 ---KDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCC  303 (456)
Q Consensus       227 ---~~~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (456)
                         +....++.+|++|.+++++.........                              ...   .|..         
T Consensus       215 ~~~~~~~~~~~~dii~~l~~~~~v~~~~~~~------------------------------~~~---~g~n---------  252 (407)
T PRK00844        215 AADEDSSHDMGGDIIPRLVERGRAYVYDFST------------------------------NEV---PGAT---------  252 (407)
T ss_pred             hcCCcccccchhhHHHHHhccCeEEEEEccc------------------------------ccc---cccc---------
Confidence               2234567789999998754221110000                              000   0000         


Q ss_pred             EEEecCcchhhcccCHHHHHHHhHhhhccccccCCCc----ccCCCceeCCCCEe-CCC--cEECCCCEECCCCEECCCC
Q 012817          304 VYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYN----FSAQNNIIHPSAEL-GSK--TTVGPHCMLGEGSQMGDKC  376 (456)
Q Consensus       304 ~yi~~~~~~~~~i~~~~~y~~~~~~~l~~~~~~~~~~----~~~~~~~i~~~~~i-~~~--~~i~~~~~i~~~~~I~~~~  376 (456)
                         ....+||.+++++++|+++++++|.+......+.    ..+... ..|++.+ +..  ..+.+++.|+++|.|+ ++
T Consensus       253 ---~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ig~~~~I~-~~  327 (407)
T PRK00844        253 ---ERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSP-NLPPAKFVDGGGRVGSAQDSLVSAGSIIS-GA  327 (407)
T ss_pred             ---cCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCC-CCCCceEecCCCccceEEeCEEcCCCEEC-Ce
Confidence               0236899999999999999999997544322110    011111 1233332 222  1244678999999998 89


Q ss_pred             eEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecC
Q 012817          377 SVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD  431 (456)
Q Consensus       377 ~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~  431 (456)
                      .|.+|+||++|.|+++|+|.+|+|+++|+||++|.|.+|+|++++.|+++++|.+
T Consensus       328 ~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~  382 (407)
T PRK00844        328 TVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVVVPPGATIGV  382 (407)
T ss_pred             eeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCCEECC
Confidence            9999999999999999999999999999999999999999999999998887754

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=6.7e-46  Score=373.97  Aligned_cols=367  Identities=23%  Similarity=0.368  Sum_probs=268.1

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCc-chHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhc-cCcc--
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-VDRL--   77 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gk-pli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~-~~~~--   77 (456)
                      +++|||||||.|+||+|| |..+||||+|++|| |||+|+|++|.++|+++++|++++.  .+.+.+++.+.+ ....  
T Consensus         3 ~~~AVILAaG~GtRL~PL-T~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~--~~~i~~~l~~~~~~~~~~~   79 (429)
T PRK02862          3 RVLAIILGGGAGTRLYPL-TKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFN--SASLNRHISQTYNFDGFSG   79 (429)
T ss_pred             cEEEEEECCCCCCcchhh-hcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCC--HHHHHHHHhcCcCccccCC
Confidence            579999999999999999 89999999999999 9999999999999999999999865  335666664321 1111  


Q ss_pred             c-eEEEE--c--cC---CcChHHHHHHHHhcCC---CCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCc
Q 012817           78 H-VEVAT--V--PE---DVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLS  146 (456)
Q Consensus        78 ~-i~~~~--~--~~---~~gt~~al~~~~~~l~---~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~  146 (456)
                      . +.+..  +  .+   .+||+++++.+.+.+.   +++|+|++||.+++.++.++++.|++.++++|+++.+.+..+  
T Consensus        80 g~~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~--  157 (429)
T PRK02862         80 GFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKD--  157 (429)
T ss_pred             CEEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhh--
Confidence            1 12221  1  11   2799999999988774   367999999999999999999999999999998886654222  


Q ss_pred             cCCCCCCcccCCCCCcccEEEecCCCcEEEEeecccccc--cccccchHHHhhcce-eEEecCCccceEEeechHHHHHH
Q 012817          147 EAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELE--KDTRIRKSILRAVGQ-MDIRADLMDAHMYAFNRSVLQEV  223 (456)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~--k~~~~~~~~~~~~~~-~~~~~~~~~~giYi~~~~vl~~~  223 (456)
                                   +..||++.+|+++++ ..+.+++..+  +...++..++...+. .....+++++|+|+|++++|..+
T Consensus       158 -------------~~~yG~i~~d~~g~V-~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~  223 (429)
T PRK02862        158 -------------ASGFGLMKTDDDGRI-TEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDL  223 (429)
T ss_pred             -------------cccceEEEECCCCcE-EEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHH
Confidence                         557999999987764 4555433211  111122222221111 11234588999999999999877


Q ss_pred             HhcCccccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeE
Q 012817          224 LDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCC  303 (456)
Q Consensus       224 ~~~~~~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (456)
                      +.+.+++.++.+|++|++++.                                                       .++.
T Consensus       224 l~~~~~~~~~~~dil~~l~~~-------------------------------------------------------~~v~  248 (429)
T PRK02862        224 LNKNPEYTDFGKEIIPEAIRD-------------------------------------------------------YKVQ  248 (429)
T ss_pred             HHHCCChhhhHHHHHHHHhcc-------------------------------------------------------CcEE
Confidence            766544567778999987542                                                       1234


Q ss_pred             EEEecCcchhhcccCHHHHHHHhHhhh-ccccccCCCc---ccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe
Q 012817          304 VYIASNSKYCVRLNSIQAFMDINRDVI-GEANHLSGYN---FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK  379 (456)
Q Consensus       304 ~yi~~~~~~~~~i~~~~~y~~~~~~~l-~~~~~~~~~~---~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~  379 (456)
                      +|  ...+||.+++++++|++++++++ ...+....+.   .+.....+.|.+.+. ++.+ .+++||++|.| +++.|+
T Consensus       249 ~~--~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~-~~~~-~~~~ig~~~~i-~~~~i~  323 (429)
T PRK02862        249 SY--LFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLL-DATI-TESIIAEGCII-KNCSIH  323 (429)
T ss_pred             EE--EeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCcccc-ccEE-EeCEECCCCEE-CCcEEE
Confidence            45  45789999999999999999988 3222221110   011123345555553 5566 36899999999 889999


Q ss_pred             eeEECCCCEECCCcEEeCeEECC-------------------CCEECCCcEEcCeEECCCCEECCCcEec----------
Q 012817          380 RSVIGRHCRIGSNVKVVNSVVMN-------------------HVTIGDGCSIQGSVICSNAQLQERVALK----------  430 (456)
Q Consensus       380 ~s~Ig~~~~ig~~~~i~~s~i~~-------------------~~~ig~~~~i~~~ii~~~~~I~~~~~i~----------  430 (456)
                      +|+||++|.||++|.|.+|+|++                   ++.||++|.|.+|+|+++|.||+++.|.          
T Consensus       324 ~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~~~~~~~~~~~~  403 (429)
T PRK02862        324 HSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVNKDNVEEADR  403 (429)
T ss_pred             EEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEEecCCCcccccc
Confidence            99999999999999999999987                   6999999999999999999999999984          


Q ss_pred             ---CeEECCC-CEECCCcEEc
Q 012817          431 ---DCQVGQG-YVVSAGCEYK  447 (456)
Q Consensus       431 ---~~~i~~~-~~v~~~~~~~  447 (456)
                         +++|++| ++|+.++.+.
T Consensus       404 ~~~~~~~~~~~~~~~~~~~~~  424 (429)
T PRK02862        404 EDQGFYIRDGIVVVVKNAVIP  424 (429)
T ss_pred             cccceEeeCCEEEEcCCcCCC
Confidence               3455555 5566655544

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=100.00  E-value=4e-45  Score=369.36  Aligned_cols=363  Identities=20%  Similarity=0.365  Sum_probs=261.6

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCc-chHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhc-cC-c--
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-VD-R--   76 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gk-pli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~-~~-~--   76 (456)
                      +|+|||||||+|+||+|| |..+||||+|++|| |||+|+|++|.++|+++++|++++..  +.+.+|+.+.+ .+ .  
T Consensus         3 ~~~aIIlA~G~gtRl~Pl-T~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~--~~i~~~l~~~~~~~~~~~   79 (436)
T PLN02241          3 SVAAIILGGGAGTRLFPL-TKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNS--ASLNRHLSRAYNFGNGGN   79 (436)
T ss_pred             ceEEEEEeCCCCCcchhh-hcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCH--HHHHHHHhccCCCCCCcc
Confidence            599999999999999999 99999999999997 99999999999999999999998653  45666665422 11 0  


Q ss_pred             ---cceEEEE--cc-----CCcChHHHHHHHHhcCC------CCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeec
Q 012817           77 ---LHVEVAT--VP-----EDVGTAGALRAIAHHLT------AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSV  140 (456)
Q Consensus        77 ---~~i~~~~--~~-----~~~gt~~al~~~~~~l~------~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~  140 (456)
                         ..+.+..  +.     .+.|++++++.++..+.      +++|++++||.+++.++.+++++|++.++++|+++.+.
T Consensus        80 ~~~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v  159 (436)
T PLN02241         80 FGDGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPV  159 (436)
T ss_pred             cCCCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEec
Confidence               0122221  21     25799999988765442      47899999999999999999999999999999988776


Q ss_pred             ccCCCccCCCCCCcccCCCCCcccEEEecCCCcEEEEeeccccccc--ccccchHHHhhcc-eeEEecCCccceEEeech
Q 012817          141 PVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEK--DTRIRKSILRAVG-QMDIRADLMDAHMYAFNR  217 (456)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k--~~~~~~~~~~~~~-~~~~~~~~~~~giYi~~~  217 (456)
                      +.++               +..|+++.+|++++ +..+.+++..++  ...++..++...+ .....++++++|+|+|++
T Consensus       160 ~~~~---------------~~~ygvv~~d~~~~-v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~  223 (436)
T PLN02241        160 DESR---------------ASDFGLMKIDDTGR-IIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKK  223 (436)
T ss_pred             chhh---------------cCcceEEEECCCCC-EEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEH
Confidence            5322               56799999987766 555654332111  0111111111000 111124789999999999


Q ss_pred             HHHHHHHhcCc-cccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCC
Q 012817          218 SVLQEVLDQKD-KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPV  296 (456)
Q Consensus       218 ~vl~~~~~~~~-~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (456)
                      ++|..++++.. ...++.+|+++.+++++                                                   
T Consensus       224 ~~l~~ll~~~~~~~~~~~~dil~~l~~~g---------------------------------------------------  252 (436)
T PLN02241        224 DVLLKLLRWRFPTANDFGSEIIPGAIKEG---------------------------------------------------  252 (436)
T ss_pred             HHHHHHHHhhcccccchhHHHHHHHhhcC---------------------------------------------------
Confidence            99976765432 22356678888887543                                                   


Q ss_pred             CcceeeEEEEecCcchhhcccCHHHHHHHhHhhhccccccCCC----cccCCCceeCCCCEeCCCcEECCCCEECCCCEE
Q 012817          297 RRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGY----NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQM  372 (456)
Q Consensus       297 ~~~~~~~~yi~~~~~~~~~i~~~~~y~~~~~~~l~~~~~~~~~----~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I  372 (456)
                         .++++|  ...+||.+++++++|++++++++...+....+    ..... ....|++.+ .++.+.+ ++|+++|.|
T Consensus       253 ---~~v~~~--~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~-~~~~~~~~~-~~~~i~~-s~I~~~~~I  324 (436)
T PLN02241        253 ---YNVQAY--LFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTS-PRFLPPSKI-EDCRITD-SIISHGCFL  324 (436)
T ss_pred             ---CeEEEE--eeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCccccc-CCCCCCcEe-cCCeEEE-eEEcCCcEE
Confidence               234455  45689999999999999999998754322110    11111 222255555 3555644 899999999


Q ss_pred             CCCCeEeeeEECCCCEECCCcEEeCeEECCC-------------------CEECCCcEEcCeEECCCCEECCCcEec---
Q 012817          373 GDKCSVKRSVIGRHCRIGSNVKVVNSVVMNH-------------------VTIGDGCSIQGSVICSNAQLQERVALK---  430 (456)
Q Consensus       373 ~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~-------------------~~ig~~~~i~~~ii~~~~~I~~~~~i~---  430 (456)
                      + +|.|++|+|+++|.||++|+|.+|++++.                   ++||++|.+++++|+++|.||+++.+.   
T Consensus       325 ~-~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~i~~~~  403 (436)
T PLN02241        325 R-ECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVIINKD  403 (436)
T ss_pred             c-CeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcEEeccc
Confidence            9 99999999999999999999999998773                   389999999999999999999999884   


Q ss_pred             ----CeEECCCCEECCC
Q 012817          431 ----DCQVGQGYVVSAG  443 (456)
Q Consensus       431 ----~~~i~~~~~v~~~  443 (456)
                          ..++|+++.|++|
T Consensus       404 ~~~~~~~~~~~~~~~~~  420 (436)
T PLN02241        404 GVQEADREEEGYYIRSG  420 (436)
T ss_pred             ccCCccccccccEEeCC
Confidence                1244555555555

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=4.7e-44  Score=360.15  Aligned_cols=342  Identities=19%  Similarity=0.283  Sum_probs=250.1

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCcc-hHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhc-cCcc--
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRP-VLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-VDRL--   77 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkp-li~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~-~~~~--   77 (456)
                      +++|||||||.|+||+|+ |..+||||+|++|+| ||+|+|++|.++|+++++|++++..  +.+.+++.+.+ ..+.  
T Consensus        15 ~~~aVILAaG~GtRl~pL-T~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~--~~i~~~~~~~~~~~~~~~   91 (425)
T PRK00725         15 DTLALILAGGRGSRLKEL-TDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKA--HSLIRHIQRGWSFFREEL   91 (425)
T ss_pred             ceEEEEECCCCCCcchhh-hCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCH--HHHHHHHHhhhcccccCC
Confidence            578999999999999999 889999999999997 9999999999999999999998653  35666664421 1010  


Q ss_pred             --ceEEEE-------ccCCcChHHHHHHHHhcCC---CCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCC
Q 012817           78 --HVEVAT-------VPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGL  145 (456)
Q Consensus        78 --~i~~~~-------~~~~~gt~~al~~~~~~l~---~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~  145 (456)
                        .+.+..       ++.+.||+++++.+.+.+.   +++|+|++||.+++.++.+++++|.+.++++|+++.+.+..+ 
T Consensus        92 ~~~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~-  170 (425)
T PRK00725         92 GEFVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPREE-  170 (425)
T ss_pred             CCeEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchhh-
Confidence              111111       1224799999999988775   357999999999999999999999999999998887654222 


Q ss_pred             ccCCCCCCcccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHh
Q 012817          146 SEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (456)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~  225 (456)
                                    +..||++.+|++++ +..+.|++..+..  .+         ....+.++++|+|+|++++|..++.
T Consensus       171 --------------~~~yG~v~~d~~~~-V~~~~EKp~~~~~--~~---------~~~~~~l~n~GIYi~~~~~L~~~L~  224 (425)
T PRK00725        171 --------------ASAFGVMAVDENDR-ITAFVEKPANPPA--MP---------GDPDKSLASMGIYVFNADYLYELLE  224 (425)
T ss_pred             --------------cccceEEEECCCCC-EEEEEECCCCccc--cc---------cCccceEEEeeEEEEeHHHHHHHHH
Confidence                          56799999998766 4555543211100  00         0112568999999999999866654


Q ss_pred             c---C-ccccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCccee
Q 012817          226 Q---K-DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHK  301 (456)
Q Consensus       226 ~---~-~~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (456)
                      +   . ....++.+|++|++++++-.                                                      
T Consensus       225 ~~~~~~~~~~~~~~dii~~l~~~~~v------------------------------------------------------  250 (425)
T PRK00725        225 EDAEDPNSSHDFGKDIIPKIVEEGKV------------------------------------------------------  250 (425)
T ss_pred             HhhcCCCccchhhHHHHHHHhccCcE------------------------------------------------------
Confidence            3   1 12346678999998865421                                                      


Q ss_pred             eEEEEe---------cCcchhhcccCHHHHHHHhHhhhccccccCCCc----ccCCCceeCCCCEe---CCCc-EECCCC
Q 012817          302 CCVYIA---------SNSKYCVRLNSIQAFMDINRDVIGEANHLSGYN----FSAQNNIIHPSAEL---GSKT-TVGPHC  364 (456)
Q Consensus       302 ~~~yi~---------~~~~~~~~i~~~~~y~~~~~~~l~~~~~~~~~~----~~~~~~~i~~~~~i---~~~~-~i~~~~  364 (456)
                       .+|..         ...+||.+++++++|++++++++........+.    ..+.. ...|++.+   +.++ .+..++
T Consensus       251 -~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~-~~~~~~~~~~~~~~~~~~~~~s  328 (425)
T PRK00725        251 -YAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQ-EQLPPAKFVFDRSGRRGMAINS  328 (425)
T ss_pred             -EEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCC-CCCCCCeEeccCCCCcceEEeC
Confidence             11211         235899999999999999999986543222110    00111 12233332   1121 123589


Q ss_pred             EECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEec
Q 012817          365 MLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK  430 (456)
Q Consensus       365 ~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~  430 (456)
                      +|+++|.| ++|.|++|+|+++|.||++|+|.+|+||++|.||++|.|.+|+|+++|.|+++++|.
T Consensus       329 ~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~~~i~~~~~i~  393 (425)
T PRK00725        329 LVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRGCVIPEGMVIG  393 (425)
T ss_pred             EEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCCCEECCCCEEC
Confidence            99999999 789999999999999999999999999999999999999999999999999887775

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.1e-44  Score=320.14  Aligned_cols=364  Identities=20%  Similarity=0.381  Sum_probs=267.7

Q ss_pred             CCceEEEEecC--CCCCCcCCCCCCCcccccccCCcchHHHHHHHHHH-CCCCEEEEEecCchhhHHHHhhh---hhhcc
Q 012817            1 MDFQVVVLAGG--TSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLEL-SNIKDLIVVVEGADAALRVGGWI---SAAYV   74 (456)
Q Consensus         1 m~~~aiIlagG--~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~-~gi~~v~iv~~~~~~~~~i~~~~---~~~~~   74 (456)
                      |+++||||.||  +|+||+|| ..+.||||+|++|+|||+|.|+.+++ .|..+++++.-+++.  .+..|+   ++.+ 
T Consensus         1 ~~~~AVIlVGGP~kGTRFRPL-Sf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~--~f~~fis~~~~e~-   76 (407)
T KOG1460|consen    1 MKVKAVILVGGPQKGTRFRPL-SFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEER--VFTDFISAIQQEF-   76 (407)
T ss_pred             CceEEEEEecCCCCCcccccc-ccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccch--HHHHHHHHHHhhc-
Confidence            88999999998  79999999 89999999999999999999999987 579999999765532  344443   2222 


Q ss_pred             CccceEEEEccCCcChHHHHHHHHhcCC---CCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCC
Q 012817           75 DRLHVEVATVPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSS  151 (456)
Q Consensus        75 ~~~~i~~~~~~~~~gt~~al~~~~~~l~---~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~  151 (456)
                       +..++|..++.+.||++.|+...+++-   .+.+++++||..++.++.+|++.|++.++.++++..+...++       
T Consensus        77 -~~pvrYL~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e~-------  148 (407)
T KOG1460|consen   77 -KVPVRYLREDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSREQ-------  148 (407)
T ss_pred             -ccchhhhccCCCCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecHhH-------
Confidence             345777767778999999998877652   456999999999999999999999999999999998876433       


Q ss_pred             CCcccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCcccc
Q 012817          152 GAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQ  231 (456)
Q Consensus       152 ~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~~~  231 (456)
                              ..+||.+..|+.+..++|+++     |+-             +.-|+.+|+|+|+|++++|..+-+-    .
T Consensus       149 --------asnfG~lV~dP~t~evlHYve-----KPs-------------TfvSd~InCGvYlF~~eif~~i~~v----~  198 (407)
T KOG1460|consen  149 --------ASNFGCLVEDPSTGEVLHYVE-----KPS-------------TFVSDIINCGVYLFTPEIFNAIAEV----Y  198 (407)
T ss_pred             --------hhccCeeeecCCcCceEEeec-----Ccc-------------hhhhcccceeEEEecHHHHHHHHHH----H
Confidence                    567999999998888999984     321             4468999999999999999766321    1


Q ss_pred             ccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcc
Q 012817          232 SLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSK  311 (456)
Q Consensus       232 s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~  311 (456)
                      ..++|.+... + ++.   .+.+.+.    ++                -.+..+. +.+     +....++++|  ...+
T Consensus       199 ~q~~~~~~~~-~-~~~---~l~~g~~----d~----------------irLeqDv-lsp-----Lag~k~lY~y--~t~~  245 (407)
T KOG1460|consen  199 RQRQDLLEVE-K-DLP---LLQPGPA----DF----------------IRLEQDV-LSP-----LAGSKQLYAY--ETTD  245 (407)
T ss_pred             HHHHhhhhhh-h-ccc---ccCCCcc----ce----------------EEeechh-hhh-----hcCCCceEEE--eccc
Confidence            1112211110 0 000   0000000    00                0000000 111     0112445555  6789


Q ss_pred             hhhcccCHHHHHHHhHhhhcc--c---ccc---CC-CcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeE
Q 012817          312 YCVRLNSIQAFMDINRDVIGE--A---NHL---SG-YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSV  382 (456)
Q Consensus       312 ~~~~i~~~~~y~~~~~~~l~~--~---~~~---~~-~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~  382 (456)
                      ||..+.+..+-..+++-+|.+  .   ..+   .+ ..++-.+++|+|+|.+++.+.||+|+.||+++.||++++|++|+
T Consensus       246 fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sI  325 (407)
T KOG1460|consen  246 FWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESI  325 (407)
T ss_pred             HHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeee
Confidence            999999887766666665541  1   011   12 23556789999999999999999999999999999999999999


Q ss_pred             ECCCCEECCCcEEeCeEECCCCEECCCcEEcC--------------eEECCCCEECCCcEecCeEECCCCE
Q 012817          383 IGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQG--------------SVICSNAQLQERVALKDCQVGQGYV  439 (456)
Q Consensus       383 Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~--------------~ii~~~~~I~~~~~i~~~~i~~~~~  439 (456)
                      |-++|.|.+|+++-+|+|+.++.||..+++++              +|.|..|.+++.+.+.+|++-++-.
T Consensus       326 Il~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~~~~~~a~Tilga~v~v~dev~v~~s~vlp~k~  396 (407)
T KOG1460|consen  326 ILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSPNLPFAALTILGADVSVEDEVIVLNSIVLPNKE  396 (407)
T ss_pred             eccCcEeeccceEEeeeecccccccceeeecccccccCCCCCcceeEEecccceecceeEEeeeeEecCCc
Confidence            99999999999999999999999999999974              6677777777777766666555443

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=100.00  E-value=2.8e-42  Score=340.85  Aligned_cols=338  Identities=20%  Similarity=0.313  Sum_probs=230.9

Q ss_pred             eEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEE
Q 012817            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT   83 (456)
Q Consensus         4 ~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~   83 (456)
                      +|||||||.|+||+|+ |..+||||+|++|||||+|+|+++.++|++++++++++.. .+.+.+++.+.......+.++.
T Consensus         1 kaiIlAaG~gtRl~pl-t~~~pK~l~pv~g~pli~~~l~~l~~~gi~~i~vv~~~~~-~~~i~~~~~~~~~~~~~~~~~~   78 (353)
T TIGR01208         1 KALILAAGKGTRLRPL-TFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVT-GEEIKEIVGEGERFGAKITYIV   78 (353)
T ss_pred             CEEEECCcCcCccCcc-ccCCCccccEECCEeHHHHHHHHHHHCCCCEEEEEeCCCC-HHHHHHHHhcccccCceEEEEE
Confidence            6899999999999999 9999999999999999999999999999999999998622 3466666654222223345555


Q ss_pred             ccCCcChHHHHHHHHhcCCCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCCcc
Q 012817           84 VPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRY  163 (456)
Q Consensus        84 ~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (456)
                      +....|++++++.+++++.++++++++||.+++.++.++++.|++.++++++++.+.+  +               +..|
T Consensus        79 ~~~~~G~~~al~~a~~~l~~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~--~---------------~~~~  141 (353)
T TIGR01208        79 QGEPLGLAHAVYTARDFLGDDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVR--D---------------PTAF  141 (353)
T ss_pred             CCCCCCHHHHHHHHHHhcCCCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECC--C---------------hhhC
Confidence            5567899999999999887678999999999999999999999999999888876543  2               4568


Q ss_pred             cEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCc---cccccccchhHH
Q 012817          164 NIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD---KFQSLKQDVLPY  240 (456)
Q Consensus       164 ~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~---~~~s~~~d~l~~  240 (456)
                      +++.+|+++ .+..+.+     |+.             ...++++++|+|+|++.+++.+ .+..   ..+....|+++.
T Consensus       142 g~~~~~~~~-~v~~~~e-----kp~-------------~~~~~~~~~Giy~~~~~l~~~l-~~~~~~~~~e~~l~d~l~~  201 (353)
T TIGR01208       142 GVAVLEDGK-RILKLVE-----KPK-------------EPPSNLAVVGLYMFRPLIFEAI-KNIKPSWRGELEITDAIQW  201 (353)
T ss_pred             eEEEEcCCC-cEEEEEE-----CCC-------------CCCccceEEEEEEECHHHHHHH-HhcCCCCCCcEEHHHHHHH
Confidence            888886444 3555543     211             1135678999999999877644 3211   111123577877


Q ss_pred             HhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcchhhcccCHH
Q 012817          241 LVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQ  320 (456)
Q Consensus       241 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~~~i~~~~  320 (456)
                      +++++                                                      .++.+|  ...+||.++++++
T Consensus       202 l~~~g------------------------------------------------------~~v~~~--~~~g~w~digt~~  225 (353)
T TIGR01208       202 LIEKG------------------------------------------------------YKVGGS--KVTGWWKDTGKPE  225 (353)
T ss_pred             HHHcC------------------------------------------------------CeEEEE--EeCcEEEeCCCHH
Confidence            76543                                                      234455  5578999999999


Q ss_pred             HHHHHhHhhhcccc-ccCCCcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEE----
Q 012817          321 AFMDINRDVIGEAN-HLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKV----  395 (456)
Q Consensus       321 ~y~~~~~~~l~~~~-~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i----  395 (456)
                      +|+++++.++.+.. .+.+   +.....+.+.+.|++++.| .++.|.+.|.||++|.|.+++|+++|.||++|.|    
T Consensus       226 dl~~a~~~ll~~~~~~~~~---i~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~  301 (353)
T TIGR01208       226 DLLDANRLILDEVEREVQG---VDDESKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAE  301 (353)
T ss_pred             HHHHHHHHHHhhcccccCC---cCCCCEEcCCEEECCCCEE-eCCEEECCcEECCCCEEcCcEECCCCEECCCCEEeeeE
Confidence            99999999987421 1111   1223344444555555555 4444444444555554444444444444444443    


Q ss_pred             -eCeEECCCCEECCC-cEEcCeEECCCCEECCCcEec---CeEECCCCEE
Q 012817          396 -VNSVVMNHVTIGDG-CSIQGSVICSNAQLQERVALK---DCQVGQGYVV  440 (456)
Q Consensus       396 -~~s~i~~~~~ig~~-~~i~~~ii~~~~~I~~~~~i~---~~~i~~~~~v  440 (456)
                       .+|+|++++.|+.+ +.+.+++|++++.|++++.+.   +.++|..+.|
T Consensus       302 i~~s~i~~~~~i~~~~~~~~~~ii~~~~~i~~~~~~~~~~~~~~g~~~~~  351 (353)
T TIGR01208       302 VEHSIVLDESVIEGVQARIVDSVIGKKVRIKGNRRRPGDLRLTIGDYSQV  351 (353)
T ss_pred             EEeeEEcCCCEEcCCcceeecCEEcCCCEECCCcccccccceEEcCCcee
Confidence             46666666766666 366677777777777776664   2455555554

Alternate name: dTDP-D-glucose synthase

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=100.00  E-value=1.2e-42  Score=344.83  Aligned_cols=335  Identities=24%  Similarity=0.365  Sum_probs=216.4

Q ss_pred             EEEEecCCCCCCcCCCCCCCcccccccCCc-chHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhcc-Cc---cce
Q 012817            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV-DR---LHV   79 (456)
Q Consensus         5 aiIlagG~g~rl~pl~~~~~pK~llpi~gk-pli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~-~~---~~i   79 (456)
                      |||||||.|+||+|+ |...||||+|++|+ |||+|++++|.++|+++++|++++..  +.+..++.+.+. .+   ..+
T Consensus         1 aiILAaG~gtRl~pl-t~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~--~~i~~~~~~~~~~~~~~~~~~   77 (361)
T TIGR02091         1 AMVLAGGRGSRLSPL-TKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKS--HSLNRHIQRGWDFDGFIDGFV   77 (361)
T ss_pred             CEEeCCCCCCccchh-hhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccCh--HHHHHHHHhccCccCccCCCE
Confidence            699999999999999 99999999999999 89999999999999999999998653  356666653221 11   123


Q ss_pred             EEEE--c--c---CCcChHHHHHHHHhcCC---CCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCC
Q 012817           80 EVAT--V--P---EDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAG  149 (456)
Q Consensus        80 ~~~~--~--~---~~~gt~~al~~~~~~l~---~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~  149 (456)
                      ++..  +  .   ...|++++++.+++.+.   +++|++++||.+++.++.++++.|++.++++++++...+..+     
T Consensus        78 ~~~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~-----  152 (361)
T TIGR02091        78 TLLPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKE-----  152 (361)
T ss_pred             EEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHh-----
Confidence            3321  1  1   13799999998877764   356999999999999999999999988888888877654222     


Q ss_pred             CCCCcccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcC--
Q 012817          150 SSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK--  227 (456)
Q Consensus       150 ~~~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~--  227 (456)
                                +..|+++.+|++++ +..+.+++...+.     .  ..    .....++++|+|+|++++|..++.+.  
T Consensus       153 ----------~~~~g~v~~d~~~~-v~~~~ekp~~~~~-----~--~~----~~~~~~~~~Giyi~~~~~l~~~l~~~~~  210 (361)
T TIGR02091       153 ----------ASRFGVMQVDEDGR-IVDFEEKPANPPS-----I--PG----MPDFALASMGIYIFDKDVLKELLEEDAD  210 (361)
T ss_pred             ----------cccccEEEECCCCC-EEEEEECCCCccc-----c--cc----cccccEEeeeEEEEcHHHHHHHHHHHhh
Confidence                      55789999987766 4455432110000     0  00    00123789999999999986565431  


Q ss_pred             --ccccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEE
Q 012817          228 --DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVY  305 (456)
Q Consensus       228 --~~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  305 (456)
                        ....++.+|+++.+++++                                                       ++++|
T Consensus       211 ~~~~~~~~~~d~l~~l~~~~-------------------------------------------------------~v~~~  235 (361)
T TIGR02091       211 DPESSHDFGKDIIPRALEEG-------------------------------------------------------SVQAY  235 (361)
T ss_pred             cCCcccccHHHHHHHHhhcC-------------------------------------------------------ceEEE
Confidence              123456678888887532                                                       23445


Q ss_pred             EecCcchhhcccCHHHHHHHhHhhhccccccCCC----cccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeee
Q 012817          306 IASNSKYCVRLNSIQAFMDINRDVIGEANHLSGY----NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRS  381 (456)
Q Consensus       306 i~~~~~~~~~i~~~~~y~~~~~~~l~~~~~~~~~----~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s  381 (456)
                        ...+||.+++++++|++++++++.........    ...+....+.|++.+++++.+ +++.||++|.|+++ +|.+|
T Consensus       236 --~~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~ig~~~~I~~~-~v~~s  311 (361)
T TIGR02091       236 --LFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQV-VDSLVSEGCIISGA-TVSHS  311 (361)
T ss_pred             --eeCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEE-ECCEECCCCEECCC-EEEcc
Confidence              33589999999999999999998754322110    000112233444444444433 34455555555543 44455


Q ss_pred             EECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcE
Q 012817          382 VIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVA  428 (456)
Q Consensus       382 ~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~  428 (456)
                      +|+++|.|+++|.|.+|+|++++.||+++.|.+|+|++++.|++++.
T Consensus       312 ~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~  358 (361)
T TIGR02091       312 VLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVV  358 (361)
T ss_pred             EECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCCCEECCCCE
Confidence            55555555555555555555555555555555555555544444433

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=100.00  E-value=5e-43  Score=348.22  Aligned_cols=339  Identities=18%  Similarity=0.289  Sum_probs=217.7

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCc-chHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccce-
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHV-   79 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gk-pli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i-   79 (456)
                      +|+|||||||+|+||+|| |..+||||+|++|| |||+|+|++|.++|+++++|++++... +++++|+.+........ 
T Consensus         2 ~~~avila~g~gtRL~PL-T~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~-~~I~~~l~~~~~~~~~~~   79 (369)
T TIGR02092         2 KMSAIINLTESSKNLSPL-TKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKER-QSLFDHLGSGREWDLHRK   79 (369)
T ss_pred             cEEEEEECCCCCcccccc-ccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcH-HHHHHHHhCCCCCCcccc
Confidence            589999999999999999 99999999999999 999999999999999999999987521 26777775421111111 


Q ss_pred             -----EEEEccCC-c--ChHHHHHHHHhcCC---CCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccC
Q 012817           80 -----EVATVPED-V--GTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEA  148 (456)
Q Consensus        80 -----~~~~~~~~-~--gt~~al~~~~~~l~---~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~  148 (456)
                           .+..++.. .  |++++++.+.+.+.   +++|++++||.+++.++.+++++|++.++++|+++.+++..+    
T Consensus        80 ~~~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~----  155 (369)
T TIGR02092        80 RDGLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPAD----  155 (369)
T ss_pred             cCcEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHH----
Confidence                 12233333 3  55667777777663   467999999999999999999999999999999887654212    


Q ss_pred             CCCCCcccCCCCCcc-cEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcC
Q 012817          149 GSSGAKDKTKKPGRY-NIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK  227 (456)
Q Consensus       149 ~~~~~~~~~~~~~~~-~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~  227 (456)
                                 +..| +++..|++++ +..+.+    ++..              .....+++|+|+|++++|..++++.
T Consensus       156 -----------~~~~g~vv~~~~~g~-v~~~~~----~~~~--------------~~~~~~~~Giyi~~~~~l~~~l~~~  205 (369)
T TIGR02092       156 -----------ASEYDTILRFDESGK-VKSIGQ----NLNP--------------EEEENISLDIYIVSTDLLIELLYEC  205 (369)
T ss_pred             -----------ccccCcEEEEcCCCC-EEeccc----cCCC--------------CCcceeeeeEEEEEHHHHHHHHHHH
Confidence                       3456 4556766654 333321    1100              0123568999999999876665431


Q ss_pred             --ccccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEE
Q 012817          228 --DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVY  305 (456)
Q Consensus       228 --~~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  305 (456)
                        .....+..|+++++++.                                                       ..+++|
T Consensus       206 ~~~~~~~~~~d~i~~~~~~-------------------------------------------------------~~v~~~  230 (369)
T TIGR02092       206 IQRGKLTSLEELIRENLKE-------------------------------------------------------LNINAY  230 (369)
T ss_pred             hhcCccccHHHHHHHHhcc-------------------------------------------------------CcEEEE
Confidence              11122234666665531                                                       123344


Q ss_pred             EecCcchhhcccCHHHHHHHhHhhhccccccCCCcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECC
Q 012817          306 IASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGR  385 (456)
Q Consensus       306 i~~~~~~~~~i~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~  385 (456)
                        ...+||.+++++++|.++++++++.......  +....      ..+.....+.+++      .|++++.|.+|+||+
T Consensus       231 --~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~--~~~~~------~~~~~~~~~~~p~------~i~~~~~i~~~~Ig~  294 (369)
T TIGR02092       231 --EYTGYLANINSVKSYYKANMDLLDPQNFQSL--FYSSQ------GPIYTKVKDEPPT------YYAENSKVENSLVAN  294 (369)
T ss_pred             --ecCCceeEcCCHHHHHHHHHHHhCCcchhhh--cCCCC------CceeeccCCCCCc------EEcCCCEEEEeEEcC
Confidence              4578999999999999999999875422110  00000      0000000111222      333334444556666


Q ss_pred             CCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecCeEECCCCEECCCcEEcCC
Q 012817          386 HCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGE  449 (456)
Q Consensus       386 ~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~~~~~~  449 (456)
                      +|.|+  +.|.+|+|+++|.||++|.|.+|+|++++.|++++.+.+|+|++++.|++++.+.+.
T Consensus       295 ~~~i~--~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~~~~  356 (369)
T TIGR02092       295 GCIIE--GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKIAGT  356 (369)
T ss_pred             CCEEe--eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCCCEECCCCEeCCC
Confidence            66664  245666666666666666666666666666666666666666666666666666554

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=3.4e-41  Score=318.45  Aligned_cols=352  Identities=22%  Similarity=0.318  Sum_probs=230.1

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |++.+||||+|.|+||    .+..||-|.|++||||++|+++.+...+.+++.++.++.  .+.+++.+.+..    ++.
T Consensus         1 ~~~~~vILAAGkGTRM----kS~lPKVLH~vaGkpMl~hVi~~a~~l~~~~i~vVvGh~--ae~V~~~~~~~~----~v~   70 (460)
T COG1207           1 MSLSAVILAAGKGTRM----KSDLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHG--AEQVREALAERD----DVE   70 (460)
T ss_pred             CCceEEEEecCCCccc----cCCCcccchhccCccHHHHHHHHHhhcCcceEEEEEcCC--HHHHHHHhcccc----Cce
Confidence            7899999999999999    677999999999999999999999999999999999866  457777665432    488


Q ss_pred             EEEccCCcChHHHHHHHHhcC-CC--CcEEEEcCC--cccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcc
Q 012817           81 VATVPEDVGTAGALRAIAHHL-TA--KDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKD  155 (456)
Q Consensus        81 ~~~~~~~~gt~~al~~~~~~l-~~--~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~  155 (456)
                      ++.|.+++||++|+.++.+++ .+  .++||++||  +++...|+++++.|.+.++.++++++..+              
T Consensus        71 ~v~Q~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~--------------  136 (460)
T COG1207          71 FVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELD--------------  136 (460)
T ss_pred             EEEecccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcC--------------
Confidence            999999999999999999988 33  359999999  67777899999999999999999988765              


Q ss_pred             cCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhc----Ccccc
Q 012817          156 KTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ----KDKFQ  231 (456)
Q Consensus       156 ~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~----~~~~~  231 (456)
                         +|..||-+..++++. +..++|    +|+..-.++          .-..+|+|+|+|....|.++|.+    |...+
T Consensus       137 ---dP~GYGRIvr~~~g~-V~~IVE----~KDA~~eek----------~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgE  198 (460)
T COG1207         137 ---DPTGYGRIVRDGNGE-VTAIVE----EKDASEEEK----------QIKEINTGIYAFDGAALLRALPKLSNNNAQGE  198 (460)
T ss_pred             ---CCCCcceEEEcCCCc-EEEEEE----cCCCCHHHh----------cCcEEeeeEEEEcHHHHHHHHHHhccccccCc
Confidence               378899999998776 556665    343322222          12357999999999988888864    22344


Q ss_pred             ccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcc
Q 012817          232 SLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSK  311 (456)
Q Consensus       232 s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~  311 (456)
                      -+.+|++..+..++...                                                      .++..+...
T Consensus       199 YYLTDvI~i~~~~g~~V------------------------------------------------------~a~~~~d~~  224 (460)
T COG1207         199 YYLTDVIAIARNEGEKV------------------------------------------------------RAVHVDDEE  224 (460)
T ss_pred             EeHHHHHHHHHhCCCeE------------------------------------------------------EEEecCchH
Confidence            55677777665443221                                                      222112111


Q ss_pred             hhhcccCHHHHHHHh--------Hhhhcccccc--CCCcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeee
Q 012817          312 YCVRLNSIQAFMDIN--------RDVIGEANHL--SGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRS  381 (456)
Q Consensus       312 ~~~~i~~~~~y~~~~--------~~~l~~~~~~--~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s  381 (456)
                      -...+|+......+.        ..++.....+  ....++.....|++.+.|.+++.+.+++.||++|+||++|.|++|
T Consensus       225 E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds  304 (460)
T COG1207         225 EVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDS  304 (460)
T ss_pred             HhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEee
Confidence            222334333322221        1122111111  112233444444444444444444444555555555555555555


Q ss_pred             EECCCCE-----------------ECCCcEEe-CeEECCCCEECCCcEEcCeEECCCCEECCCcEecCeEECCCCEECCC
Q 012817          382 VIGRHCR-----------------IGSNVKVV-NSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAG  443 (456)
Q Consensus       382 ~Ig~~~~-----------------ig~~~~i~-~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~~i~~~~~v~~~  443 (456)
                      .|++++.                 |||.+.++ +|.|+++++||..+.+.++.||+++.+++-++|.++.||+++.||+|
T Consensus       305 ~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ig~gsKa~HLtYlGDA~iG~~~NiGAG  384 (460)
T COG1207         305 VIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIGAG  384 (460)
T ss_pred             EEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEecccccCCccccceeeeccceecCCceeccc
Confidence            5554444                 44444444 44455555555555555555555555555556666677777777777


Q ss_pred             cEEcC
Q 012817          444 CEYKG  448 (456)
Q Consensus       444 ~~~~~  448 (456)
                      ++..+
T Consensus       385 tItcN  389 (460)
T COG1207         385 TITCN  389 (460)
T ss_pred             eEEEc
Confidence            65443

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=4.9e-40  Score=336.08  Aligned_cols=349  Identities=17%  Similarity=0.220  Sum_probs=248.5

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |+|+|||||||.|+||++    ..||+|+|++|||||+|+|++|.++|+++++|++++..  +.+.+++..     .++.
T Consensus         6 ~~~~avILAaG~gtRl~~----~~pK~llpi~gkpli~~~l~~l~~~gi~~ivvv~~~~~--~~i~~~~~~-----~~i~   74 (481)
T PRK14358          6 RPLDVVILAAGQGTRMKS----ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGA--EQVEAALQG-----SGVA   74 (481)
T ss_pred             CCceEEEECCCCCCcCCC----CCCceecEECCeeHHHHHHHHHHhCCCCeEEEEeCCCH--HHHHHHhcc-----CCcE
Confidence            689999999999999964    48999999999999999999999999999999998652  356655532     2356


Q ss_pred             EEEccCCcChHHHHHHHHhcCC--CCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCccc
Q 012817           81 VATVPEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK  156 (456)
Q Consensus        81 ~~~~~~~~gt~~al~~~~~~l~--~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~  156 (456)
                      ++.++.+.|++++++.+++.+.  ++++++++||.  +.+.+++++++.|++.++++++++.+.+.              
T Consensus        75 ~v~~~~~~Gt~~al~~~~~~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~~--------------  140 (481)
T PRK14358         75 FARQEQQLGTGDAFLSGASALTEGDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELPD--------------  140 (481)
T ss_pred             EecCCCcCCcHHHHHHHHHHhhCCCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcCC--------------
Confidence            6666667899999999888774  35699999994  66778999999999999998888766542              


Q ss_pred             CCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHH---HHHHHhcCcccccc
Q 012817          157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSV---LQEVLDQKDKFQSL  233 (456)
Q Consensus       157 ~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~v---l~~~~~~~~~~~s~  233 (456)
                         +.+||++.+|++++ +..+.|+++..+    .          +..++++++|+|+|++++   ++.+.......+.+
T Consensus       141 ---~~~yG~v~~d~~g~-v~~~~Ek~~~~~----~----------~~~~~~~n~Giyi~~~~~~~~~~~i~~~~~~ge~~  202 (481)
T PRK14358        141 ---ATGYGRIVRGADGA-VERIVEQKDATD----A----------EKAIGEFNSGVYVFDARAPELARRIGNDNKAGEYY  202 (481)
T ss_pred             ---CCCceEEEECCCCC-EEEEEECCCCCh----h----------HhhCCeEEEEEEEEchHHHHHHHhcCCCccCCeEE
Confidence               45699999998775 455554221000    0          012356899999999655   43321111111222


Q ss_pred             ccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcchh
Q 012817          234 KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYC  313 (456)
Q Consensus       234 ~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~  313 (456)
                      .+|+++.+.+++.                                                      ++.+|  +..++|
T Consensus       203 l~d~i~~~~~~g~------------------------------------------------------~i~~~--~~~~~~  226 (481)
T PRK14358        203 LTDLLGLYRAGGA------------------------------------------------------QVRAF--KLSDPD  226 (481)
T ss_pred             HHHHHHHHHHCCC------------------------------------------------------eEEEE--ecCCHH
Confidence            3588888876542                                                      23344  344567


Q ss_pred             hcccCHHHHHHHhHh-hhcccc---------cc-CC-CcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeee
Q 012817          314 VRLNSIQAFMDINRD-VIGEAN---------HL-SG-YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRS  381 (456)
Q Consensus       314 ~~i~~~~~y~~~~~~-~l~~~~---------~~-~~-~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s  381 (456)
                      ..++...+|+..+++ ++.+..         .+ ++ ..++.++..|++++.|++++.|.+++.||++|.|+++|.|++|
T Consensus       227 ~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~s  306 (481)
T PRK14358        227 EVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDS  306 (481)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeee
Confidence            666665555444443 332211         01 11 1223566777777888888888888888999999999999889


Q ss_pred             EECCCCEECCCcEEeCeEECCCCEECCCcEEc-CeEECCCCEECCCcEe-----------------cCeEECCCCEECCC
Q 012817          382 VIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVAL-----------------KDCQVGQGYVVSAG  443 (456)
Q Consensus       382 ~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i-----------------~~~~i~~~~~v~~~  443 (456)
                      +|+++|.|+++++|.+++|++++.||+++.+. +++|++++.|++++.|                 .+++||+++.|+++
T Consensus       307 vI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~  386 (481)
T PRK14358        307 VLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARLDAGVKAGHLAYLGDVTIGAETNVGAG  386 (481)
T ss_pred             EECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCceecCCcccCceEEECCeEEcCCceEcCC
Confidence            99999999999988888888888888888886 7888888888876553                 45667777777777


Q ss_pred             cEEcC
Q 012817          444 CEYKG  448 (456)
Q Consensus       444 ~~~~~  448 (456)
                      +.+.+
T Consensus       387 ~~i~~  391 (481)
T PRK14358        387 TIVAN  391 (481)
T ss_pred             EEEeC
Confidence            66643

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=4.6e-39  Score=328.60  Aligned_cols=347  Identities=18%  Similarity=0.305  Sum_probs=254.9

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~   81 (456)
                      ++.|||||||.|+||+    ...||+|+|++|+|||+|+|++|.++|++++++++++..  +.+.+++.+.    ..+.+
T Consensus         3 ~~~avIlAaG~g~Rl~----~~~pK~l~pi~g~pli~~~l~~l~~~gi~~iiiv~~~~~--~~i~~~~~~~----~~i~~   72 (459)
T PRK14355          3 NLAAIILAAGKGTRMK----SDLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQA--EKVREHFAGD----GDVSF   72 (459)
T ss_pred             cceEEEEcCCCCcccC----CCCCceeceeCCccHHHHHHHHHHhcCCCeEEEEECCCH--HHHHHHhccC----CceEE
Confidence            4899999999999994    468999999999999999999999999999999998652  3555555432    13556


Q ss_pred             EEccCCcChHHHHHHHHhcCCC--CcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccC
Q 012817           82 ATVPEDVGTAGALRAIAHHLTA--KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT  157 (456)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~l~~--~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~  157 (456)
                      ..++...|++++++.+++.+.+  ++|+++.||.  +.+.+++++++.|.+.+++++++..+..  +             
T Consensus        73 ~~~~~~~Gt~~al~~a~~~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~--~-------------  137 (459)
T PRK14355         73 ALQEEQLGTGHAVACAAPALDGFSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLE--N-------------  137 (459)
T ss_pred             EecCCCCCHHHHHHHHHHHhhccCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcC--C-------------
Confidence            5566678999999999888753  6799999995  5677899999999888888887765542  1             


Q ss_pred             CCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCc----ccccc
Q 012817          158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD----KFQSL  233 (456)
Q Consensus       158 ~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~----~~~s~  233 (456)
                        +..|+.+.+|++++ +..+.+     |+...+.         ...++++++|+|+|++++|.+.++...    ..+..
T Consensus       138 --~~~~g~v~~d~~g~-v~~~~e-----k~~~~~~---------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~  200 (459)
T PRK14355        138 --PFGYGRIVRDADGR-VLRIVE-----EKDATPE---------ERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYY  200 (459)
T ss_pred             --CCcCCEEEEcCCCC-EEEEEE-----cCCCChh---------HhhccEEEEEEEEEeHHHHHHHHHHcCccccCCcee
Confidence              45688888887776 444543     2110000         012467899999999997655554211    11223


Q ss_pred             ccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcch-
Q 012817          234 KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKY-  312 (456)
Q Consensus       234 ~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~-  312 (456)
                      .+|+++.+++++                                                      .++.+|  +..+| 
T Consensus       201 ~~d~i~~l~~~g------------------------------------------------------~~v~~~--~~~~~~  224 (459)
T PRK14355        201 LTDIVAMAAAEG------------------------------------------------------LRCLAF--PVADPD  224 (459)
T ss_pred             HHHHHHHHHHCC------------------------------------------------------CeEEEE--EcCCHH
Confidence            458888887643                                                      234455  33455 


Q ss_pred             -hhcccCHHHHHHHhHhhhcccc---------ccCCC-cccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeee
Q 012817          313 -CVRLNSIQAFMDINRDVIGEAN---------HLSGY-NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRS  381 (456)
Q Consensus       313 -~~~i~~~~~y~~~~~~~l~~~~---------~~~~~-~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s  381 (456)
                       |.+++++++|+++++.++....         .++.. ..+++++.|++++.|++++.|++++.||++|.|+++|.|.+|
T Consensus       225 ~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~  304 (459)
T PRK14355        225 EIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGC  304 (459)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCC
Confidence             8899999999999765543210         11221 245566777788888888888888899999999999999999


Q ss_pred             EECCCCEECCCcEEeCeEECCCCEECCCcEEc-CeEECCCCEECCCcEec-----------------CeEECCCCEECCC
Q 012817          382 VIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-----------------DCQVGQGYVVSAG  443 (456)
Q Consensus       382 ~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-----------------~~~i~~~~~v~~~  443 (456)
                      +||++|.|++++.|.+|+|++++.||+++.+. ++.|++++.||.++.+.                 ++.||+++.||++
T Consensus       305 ~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~  384 (459)
T PRK14355        305 RIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIVMGEGSKASHLTYLGDATIGRNVNIGCG  384 (459)
T ss_pred             EEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCCEECCCceeeeeccccCCEECCCCEEccc
Confidence            99999999999999999999999999998886 78888888877765433                 4556666666666


Q ss_pred             cEE
Q 012817          444 CEY  446 (456)
Q Consensus       444 ~~~  446 (456)
                      +.+
T Consensus       385 ~~~  387 (459)
T PRK14355        385 TIT  387 (459)
T ss_pred             eee
Confidence            543

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=9.1e-38  Score=320.62  Aligned_cols=348  Identities=18%  Similarity=0.244  Sum_probs=232.4

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~   81 (456)
                      ++.|||||||.|+||+|    ..||+|+|++|||||+|+|++|.+++++++++++++..  +.+.+++.+..   ..+.+
T Consensus         4 ~~~avILAaG~gtRm~~----~~pK~llpi~gkpli~~~l~~l~~~g~~~iivvv~~~~--~~i~~~~~~~~---~~~~~   74 (482)
T PRK14352          4 PTAVIVLAAGAGTRMRS----DTPKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDR--ERVAPAVAELA---PEVDI   74 (482)
T ss_pred             CceEEEEcCCCCCcCCC----CCCceeceeCCccHHHHHHHHHHhcCCCcEEEEECCCH--HHHHHHhhccC---CccEE
Confidence            46799999999999964    58999999999999999999999999999999998653  35555554321   12445


Q ss_pred             EEccCCcChHHHHHHHHhcCC---CCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCccc
Q 012817           82 ATVPEDVGTAGALRAIAHHLT---AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK  156 (456)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~l~---~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~  156 (456)
                      ..++...|++++++.+++.+.   ++++++++||.  +...++.++++.|++.++.++++..+..               
T Consensus        75 ~~~~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~---------------  139 (482)
T PRK14352         75 AVQDEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLD---------------  139 (482)
T ss_pred             EeCCCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecC---------------
Confidence            555667899999999988875   25699999995  5567899999999888887777655432               


Q ss_pred             CCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCcc----ccc
Q 012817          157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK----FQS  232 (456)
Q Consensus       157 ~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~----~~s  232 (456)
                        ++..|+.+..|++++ +..+.+++....     .         +...+++++|+|+|++++|..++.+...    ...
T Consensus       140 --~p~~yg~~~~~~~g~-V~~~~EKp~~~~-----~---------~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~  202 (482)
T PRK14352        140 --DPTGYGRILRDQDGE-VTAIVEQKDATP-----S---------QRAIREVNSGVYAFDAAVLRSALARLSSDNAQGEL  202 (482)
T ss_pred             --CCCCCCEEEECCCCC-EEEEEECCCCCH-----H---------HhhcceEEEEEEEEEHHHHHHHHHhhCccccCCcE
Confidence              255788888887776 455543221100     0         1124568999999999999766543111    122


Q ss_pred             cccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcch
Q 012817          233 LKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKY  312 (456)
Q Consensus       233 ~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~  312 (456)
                      ...|+++++++.+                                                      .++.+|  +..+|
T Consensus       203 ~l~d~i~~l~~~g------------------------------------------------------~~V~~~--~~~g~  226 (482)
T PRK14352        203 YLTDVLAIAREAG------------------------------------------------------HRVGAH--HADDS  226 (482)
T ss_pred             eHHHHHHHHHHCC------------------------------------------------------CeEEEE--ecCCc
Confidence            3468888887643                                                      233445  56789


Q ss_pred             hhcccCHHHH------HHHhHhhhcccc----c-cC-CCcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEee
Q 012817          313 CVRLNSIQAF------MDINRDVIGEAN----H-LS-GYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR  380 (456)
Q Consensus       313 ~~~i~~~~~y------~~~~~~~l~~~~----~-~~-~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~  380 (456)
                      |.+++.++.|      ..+++.++....    . +. ...++.++++|++++.|++++.|++++.||++|.|+++|.|.+
T Consensus       227 w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~  306 (482)
T PRK14352        227 AEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTD  306 (482)
T ss_pred             ceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEec
Confidence            9988877665      334444443211    1 11 1234456667777777777777777777777777777777776


Q ss_pred             eEECCCCEECCCcEEeCeEECCCCEE------------------CCCcEEcCeEECCCCEECCCcEecCeEECCCCEECC
Q 012817          381 SVIGRHCRIGSNVKVVNSVVMNHVTI------------------GDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSA  442 (456)
Q Consensus       381 s~Ig~~~~ig~~~~i~~s~i~~~~~i------------------g~~~~i~~~ii~~~~~I~~~~~i~~~~i~~~~~v~~  442 (456)
                      ++||++|.|++ +.+.+++|++++.|                  |.++.+.+|+|++++.|++.+.+.+++||+++.|++
T Consensus       307 ~~Ig~~~~i~~-~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~  385 (482)
T PRK14352        307 VTVGEGASVVR-THGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRGTKVPHLTYVGDADIGEHSNIGA  385 (482)
T ss_pred             CEECCCCEEee-eeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCCcEEccCceecccEECCCcEECC
Confidence            66666655532 33444444444444                  444444455555666666666666777888888888


Q ss_pred             CcEEc
Q 012817          443 GCEYK  447 (456)
Q Consensus       443 ~~~~~  447 (456)
                      ++.+.
T Consensus       386 ~~~i~  390 (482)
T PRK14352        386 SSVFV  390 (482)
T ss_pred             CcEEe
Confidence            77654

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=8.2e-38  Score=319.71  Aligned_cols=343  Identities=17%  Similarity=0.212  Sum_probs=237.9

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~   82 (456)
                      +.|||||||.|+||    ....||+|+|++|||||+|++++|...+++++++++++.  .+.+.+++.+     ..+.++
T Consensus         6 ~~aiILAaG~gtR~----~~~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~--~~~i~~~~~~-----~~~~~v   74 (456)
T PRK14356          6 TGALILAAGKGTRM----HSDKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHR--ADMVRAAFPD-----EDARFV   74 (456)
T ss_pred             eeEEEEcCCCCccC----CCCCCceecccCCCcHHHHHHHHHHhcCCCcEEEEECCC--HHHHHHhccc-----cCceEE
Confidence            78999999999999    557999999999999999999999999999999998754  2345554432     235666


Q ss_pred             EccCCcChHHHHHHHHhcCC---CCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccC
Q 012817           83 TVPEDVGTAGALRAIAHHLT---AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT  157 (456)
Q Consensus        83 ~~~~~~gt~~al~~~~~~l~---~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~  157 (456)
                      .++.+.|++++++.+++.+.   .+++++++||.  +...+++.+++.|+  +++++++....+  +             
T Consensus        75 ~~~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~~--~-------------  137 (456)
T PRK14356         75 LQEQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTLP--D-------------  137 (456)
T ss_pred             EcCCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEcC--C-------------
Confidence            66667899999999987774   36799999995  55677999998876  556666665543  2             


Q ss_pred             CCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCcc----cccc
Q 012817          158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK----FQSL  233 (456)
Q Consensus       158 ~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~----~~s~  233 (456)
                        +..|+++..+ +++ +..+.++.+....    .        ....+.++++|+|+|++++|..+++...+    ....
T Consensus       138 --~~~~g~v~~~-~g~-V~~~~ek~~~~~~----~--------~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~~  201 (456)
T PRK14356        138 --PGAYGRVVRR-NGH-VAAIVEAKDYDEA----L--------HGPETGEVNAGIYYLRLDAVESLLPRLTNANKSGEYY  201 (456)
T ss_pred             --CCCceEEEEc-CCe-EEEEEECCCCChH----H--------hhhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCcEE
Confidence              5568887663 554 4454432111000    0        01135678999999999998766543211    1122


Q ss_pred             ccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcchh
Q 012817          234 KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYC  313 (456)
Q Consensus       234 ~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~  313 (456)
                      .+|+++.+.+.+                                                      .++.+|......+|
T Consensus       202 ltd~i~~~~~~g------------------------------------------------------~~v~~~~~~~~~~~  227 (456)
T PRK14356        202 ITDLVGLAVAEG------------------------------------------------------MNVLGVNCGEDPNL  227 (456)
T ss_pred             HHHHHHHHHHCC------------------------------------------------------CeEEEEEcCCcCeE
Confidence            357777765432                                                      22334422222357


Q ss_pred             hcccCHHHHHHHhHhhhccc--------ccc--CCCcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEE
Q 012817          314 VRLNSIQAFMDINRDVIGEA--------NHL--SGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVI  383 (456)
Q Consensus       314 ~~i~~~~~y~~~~~~~l~~~--------~~~--~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~I  383 (456)
                      .+++++++|..+...+..+.        ..+  ....++++.+.+++++.|.+++.|++++.||++|.|+++|.|.+++|
T Consensus       228 ~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i  307 (456)
T PRK14356        228 LGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVV  307 (456)
T ss_pred             ecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEE
Confidence            89999999988765443211        111  11234455666667777777777777888999999999999988999


Q ss_pred             CCCCEECCCcEEeCeEECCCCEECCCcEEc-CeEECCCCEECCCcEecCeEECCCCEECCC
Q 012817          384 GRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGYVVSAG  443 (456)
Q Consensus       384 g~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~~~~i~~~~~v~~~  443 (456)
                      |++|.|++++.|.+|+|+++|.||+++.|. +++|+++++|++++.+.+++|++++.++++
T Consensus       308 ~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~  368 (456)
T PRK14356        308 SSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAKANHL  368 (456)
T ss_pred             CCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEecCCcEeccc
Confidence            999999998888888888888888888886 788888888887776655555554444333

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=9.5e-38  Score=318.82  Aligned_cols=347  Identities=16%  Similarity=0.229  Sum_probs=221.6

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |+|++||||||.|+||+    ...||+|+|++|||||+|+++.|..++++++++++++..  +.+++++.+     ..+.
T Consensus         4 ~~~~aiIlAaG~gtRl~----~~~pK~l~~i~gkpli~~~i~~l~~~gi~~i~vv~~~~~--~~i~~~~~~-----~~~~   72 (456)
T PRK09451          4 SAMSVVILAAGKGTRMY----SDLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGG--DLLKQTLAD-----EPLN   72 (456)
T ss_pred             CCceEEEEcCCCCCcCC----CCCChhcceeCChhHHHHHHHHHHhcCCCcEEEEECCCH--HHHHHhhcc-----CCcE
Confidence            36899999999999995    468999999999999999999999999999999998542  355555532     1356


Q ss_pred             EEEccCCcChHHHHHHHHhcCC-CCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccC
Q 012817           81 VATVPEDVGTAGALRAIAHHLT-AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT  157 (456)
Q Consensus        81 ~~~~~~~~gt~~al~~~~~~l~-~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~  157 (456)
                      +..+++..|++++++.+++.+. ++.+++++||.  +.+.++.++++.|.+.+  +++++.+.+  +             
T Consensus        73 ~i~~~~~~Gt~~al~~a~~~l~~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~~~--~-------------  135 (456)
T PRK09451         73 WVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVKLD--N-------------  135 (456)
T ss_pred             EEECCCCCCcHHHHHHHHHhhccCCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEEcC--C-------------
Confidence            6666667899999999988775 35799999995  66778999998886544  334443332  2             


Q ss_pred             CCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCc----ccccc
Q 012817          158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD----KFQSL  233 (456)
Q Consensus       158 ~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~----~~~s~  233 (456)
                        +..|+++.. +++ .+..+.|++....     .         ...++++++|+|+|++++|.++++...    ..+.+
T Consensus       136 --~~~yG~v~~-~~g-~V~~~~EKp~~~~-----~---------~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~  197 (456)
T PRK09451        136 --PTGYGRITR-ENG-KVVGIVEQKDATD-----E---------QRQIQEINTGILVANGADLKRWLAKLTNNNAQGEYY  197 (456)
T ss_pred             --CCCceEEEe-cCC-eEEEEEECCCCCh-----H---------HhhccEEEEEEEEEEHHHHHHHHHhcCCccccCcee
Confidence              556888744 455 4556654321110     0         112457899999999998876664321    12224


Q ss_pred             ccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEe----cC
Q 012817          234 KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIA----SN  309 (456)
Q Consensus       234 ~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~----~~  309 (456)
                      .+|+++.+++++..                                                      +.+|..    ..
T Consensus       198 l~d~i~~~i~~g~~------------------------------------------------------v~~~~~~~~~~~  223 (456)
T PRK09451        198 ITDIIALAHQEGRE------------------------------------------------------IVAVHPQRLSEV  223 (456)
T ss_pred             HHHHHHHHHHCCCe------------------------------------------------------EEEEecCCHHHh
Confidence            46999998876531                                                      222210    12


Q ss_pred             cch--hhcccCHHHHHHHhH--hhhcccccc-CCC-cccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEE
Q 012817          310 SKY--CVRLNSIQAFMDINR--DVIGEANHL-SGY-NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVI  383 (456)
Q Consensus       310 ~~~--~~~i~~~~~y~~~~~--~~l~~~~~~-~~~-~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~I  383 (456)
                      .+|  |.+++++++|+++++  .++.....+ ++. ....+...+++++.|++++.|.+++.||++|.|+++|.|.+|+|
T Consensus       224 ~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~i  303 (456)
T PRK09451        224 EGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVI  303 (456)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECCCCEEcCCeEEecCcEECCCCEECCCceEecCEE
Confidence            445  667999999999874  233221111 110 01112334455555555555555556666666666666655666


Q ss_pred             CCCCEECCCcEEeCeEECCCCEECCCcEEc-CeEECCCCEECCC-----------------cEecCeEECCCCEECCCcE
Q 012817          384 GRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQER-----------------VALKDCQVGQGYVVSAGCE  445 (456)
Q Consensus       384 g~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~-----------------~~i~~~~i~~~~~v~~~~~  445 (456)
                      +++|.|++++.|.+|+|+++++||+++.|. +++|++++.||++                 +.+.+|.||+++.|++++.
T Consensus       304 g~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~~~~~~~~~~g~~~ig~~~~ig~~~~  383 (456)
T PRK09451        304 GDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTI  383 (456)
T ss_pred             cCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceeeCCCCccCccccccccEECCCCEEcCCeE
Confidence            666666666666655555555555555554 5555555554444                 4445567777777776665


Q ss_pred             Ec
Q 012817          446 YK  447 (456)
Q Consensus       446 ~~  447 (456)
                      +.
T Consensus       384 ~~  385 (456)
T PRK09451        384 TC  385 (456)
T ss_pred             Ee
Confidence            43

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=100.00  E-value=3.1e-37  Score=315.40  Aligned_cols=334  Identities=21%  Similarity=0.303  Sum_probs=231.2

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~   82 (456)
                      |+|||||||.|+||+|    ..||+|+|++|+|||+|+++++.++|+++++|++++.  .+.+.+++.++     ++.+.
T Consensus         1 m~aiIlAaG~g~R~~~----~~pK~l~~i~gkpli~~~l~~l~~~g~~~iiiv~~~~--~~~i~~~~~~~-----~i~~~   69 (451)
T TIGR01173         1 LSVVILAAGKGTRMKS----DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHG--AEQVRKALANR-----DVNWV   69 (451)
T ss_pred             CeEEEEcCCCCcccCC----CCchhhceeCCccHHHHHHHHHHhCCCCeEEEEECCC--HHHHHHHhcCC-----CcEEE
Confidence            7899999999999964    5899999999999999999999999999999998865  23565555442     35565


Q ss_pred             EccCCcChHHHHHHHHhcCCC-CcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCC
Q 012817           83 TVPEDVGTAGALRAIAHHLTA-KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK  159 (456)
Q Consensus        83 ~~~~~~gt~~al~~~~~~l~~-~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~  159 (456)
                      .++...|++++++.+++.+.+ ++++++.||.  +.+.++..+++.|.+.+  +++++.+.+  +               
T Consensus        70 ~~~~~~G~~~ai~~a~~~l~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~~--~~~~~~~~~--~---------------  130 (451)
T TIGR01173        70 LQAEQLGTGHAVLQALPFLPDDGDVLVLYGDVPLISAETLERLLEAHRQNG--ITLLTAKLP--D---------------  130 (451)
T ss_pred             EcCCCCchHHHHHHHHHhcCCCCcEEEEECCcCCcCHHHHHHHHHHHhhCC--EEEEEEecC--C---------------
Confidence            555668999999999988853 5799999995  55668999999887643  555554432  1               


Q ss_pred             CCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCcc----cccccc
Q 012817          160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK----FQSLKQ  235 (456)
Q Consensus       160 ~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~----~~s~~~  235 (456)
                      +..|+.+..|++++ +..+.++....     +..         ....++++|+|+|++++|..++++..+    .+.+..
T Consensus       131 ~~~~g~v~~d~~g~-v~~~~ek~~~~-----~~~---------~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~~  195 (451)
T TIGR01173       131 PTGYGRIIRENDGK-VTAIVEDKDAN-----AEQ---------KAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLT  195 (451)
T ss_pred             CCCCCEEEEcCCCC-EEEEEEcCCCC-----hHH---------hcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeHH
Confidence            44588888887766 44444321100     000         013467899999999997665543211    112235


Q ss_pred             chhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcch--h
Q 012817          236 DVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKY--C  313 (456)
Q Consensus       236 d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~--~  313 (456)
                      |+++.+++++.                                                      ++..|  +..+|  |
T Consensus       196 ~~~~~l~~~g~------------------------------------------------------~v~~~--~~~~~~~~  219 (451)
T TIGR01173       196 DVIALAVADGE------------------------------------------------------TVRAV--QVDDSDEV  219 (451)
T ss_pred             HHHHHHHHCCC------------------------------------------------------eEEEE--EcCChhhe
Confidence            77777765431                                                      23344  33455  6


Q ss_pred             hcccCHHHHHHHhHhhhc--------ccccc--CCCcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEE
Q 012817          314 VRLNSIQAFMDINRDVIG--------EANHL--SGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVI  383 (456)
Q Consensus       314 ~~i~~~~~y~~~~~~~l~--------~~~~~--~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~I  383 (456)
                      .++++++++...+..+..        .+..+  .....+.+.+.|++++.|++++.|++++.||++|.|+++|.|.+++|
T Consensus       220 ~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i  299 (451)
T TIGR01173       220 LGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVI  299 (451)
T ss_pred             ecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEe
Confidence            778888887665443221        11111  11223456667777788888888888888888888888888888888


Q ss_pred             CCCCEECCCcEEeCeEECCCCEECCCcEEc-CeEECCCCEECCCcEecCeEECCC
Q 012817          384 GRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQG  437 (456)
Q Consensus       384 g~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~~~~i~~~  437 (456)
                      |++|.|++++.|.+|+|+++|.||+++.|. +++|+++|.|++++.+.++.|+++
T Consensus       300 ~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~  354 (451)
T TIGR01173       300 GSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKG  354 (451)
T ss_pred             cCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECCC
Confidence            888888888888888888888888888886 677777777777665544444433

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=1.7e-36  Score=309.11  Aligned_cols=349  Identities=17%  Similarity=0.229  Sum_probs=219.7

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~   81 (456)
                      ++.|||||||.|+||+    ...||+|+|++|||||+|++++|..+++++++|++++..  +.+.+++.+..   ..+.+
T Consensus         5 ~~~aiILAaG~gsR~~----~~~pK~ll~v~gkpli~~~l~~l~~~gi~~ivvv~~~~~--~~i~~~~~~~~---~~~~~   75 (446)
T PRK14353          5 TCLAIILAAGEGTRMK----SSLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGA--EAVAAAAAKIA---PDAEI   75 (446)
T ss_pred             cceEEEEcCCCCCccC----CCCCcccCEECCchHHHHHHHHHHhCCCCcEEEEECCCH--HHHHHHhhccC---CCceE
Confidence            5789999999999994    357999999999999999999999999999999998653  34555553321   12344


Q ss_pred             EEccCCcChHHHHHHHHhcCC--CCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccC
Q 012817           82 ATVPEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT  157 (456)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~l~--~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~  157 (456)
                      .......|++++++.+++.+.  ++++++++||.  +...+++.+++. .+.+++++++..+..  +             
T Consensus        76 ~~~~~~~G~~~sl~~a~~~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~-~~~~~~~~i~~~~~~--~-------------  139 (446)
T PRK14353         76 FVQKERLGTAHAVLAAREALAGGYGDVLVLYGDTPLITAETLARLRER-LADGADVVVLGFRAA--D-------------  139 (446)
T ss_pred             EEcCCCCCcHHHHHHHHHHHhccCCCEEEEeCCcccCCHHHHHHHHHh-HhcCCcEEEEEEEeC--C-------------
Confidence            445566899999999988773  56799999995  555578888874 445667766655432  1             


Q ss_pred             CCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCc----ccccc
Q 012817          158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD----KFQSL  233 (456)
Q Consensus       158 ~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~----~~~s~  233 (456)
                        +..|+.+.. ++++ +..+.+++..+.     .         ...+.++++|+|+|+++.|..++++..    ....+
T Consensus       140 --~~~~g~~~~-~~g~-v~~~~ek~~~~~-----~---------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~  201 (446)
T PRK14353        140 --PTGYGRLIV-KGGR-LVAIVEEKDASD-----E---------ERAITLCNSGVMAADGADALALLDRVGNDNAKGEYY  201 (446)
T ss_pred             --CCcceEEEE-CCCe-EEEEEECCCCCh-----H---------HhhceEEEEEEEEEEHHHHHHHHHhhcccCCCCcEe
Confidence              456787766 3444 455543211100     0         012356789999999987755554311    11122


Q ss_pred             ccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcchh
Q 012817          234 KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYC  313 (456)
Q Consensus       234 ~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~  313 (456)
                      ..|.++++++.+                                                      .++..|.. ...+|
T Consensus       202 ~~d~~~~l~~~g------------------------------------------------------~~v~~~~~-~~~~~  226 (446)
T PRK14353        202 LTDIVAIARAEG------------------------------------------------------LRVAVVEA-PEDEV  226 (446)
T ss_pred             HHHHHHHHHHCC------------------------------------------------------CeEEEEec-Chhhc
Confidence            356677776543                                                      22334421 23579


Q ss_pred             hcccCHHHHHHHhHhh---------hccccccCC-CcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEE
Q 012817          314 VRLNSIQAFMDINRDV---------IGEANHLSG-YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVI  383 (456)
Q Consensus       314 ~~i~~~~~y~~~~~~~---------l~~~~~~~~-~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~I  383 (456)
                      .+++++++|..++..+         +....-+.+ ..++++...|++++.|++++.|++++.|+++|.|++++.|.+++|
T Consensus       227 ~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~I  306 (446)
T PRK14353        227 RGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHV  306 (446)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCCEECCCCEECCCCEECCCCEECCCeEEeccEE
Confidence            9999999998776422         221100111 123344555666666666666666666666666666666666677


Q ss_pred             CCCCEECCCcEEe-CeEECCCCEECCCcEEcC-----------------eEECCCCEECCCcEe--------cCeEECCC
Q 012817          384 GRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQG-----------------SVICSNAQLQERVAL--------KDCQVGQG  437 (456)
Q Consensus       384 g~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~~-----------------~ii~~~~~I~~~~~i--------~~~~i~~~  437 (456)
                      |++|.||+++.|. +|+|+++|.||+++.+.+                 ++|+++|.||+++++        .+++||++
T Consensus       307 g~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~  386 (446)
T PRK14353        307 GEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAG  386 (446)
T ss_pred             CCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCC
Confidence            7777777777766 666666666666665544                 455555555555443        13455555


Q ss_pred             CEECCCcEEcC
Q 012817          438 YVVSAGCEYKG  448 (456)
Q Consensus       438 ~~v~~~~~~~~  448 (456)
                      +.|++++.+..
T Consensus       387 ~~ig~~~~i~~  397 (446)
T PRK14353        387 AFIGSNSALVA  397 (446)
T ss_pred             cEECCCCEEeC
Confidence            55555554443

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=3.8e-36  Score=307.69  Aligned_cols=337  Identities=20%  Similarity=0.325  Sum_probs=218.1

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |+++|||||||.|+||+    ..+||+|+|++|||||+|+|++|.+++++++++++++..  +.+.+++.+    .  +.
T Consensus         1 m~~~avIlAaG~g~Rl~----~~~pK~ll~i~Gkpli~~~l~~l~~~gi~~iivvv~~~~--~~i~~~~~~----~--~~   68 (458)
T PRK14354          1 MNRYAIILAAGKGTRMK----SKLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGA--EEVKEVLGD----R--SE   68 (458)
T ss_pred             CCceEEEEeCCCCcccC----CCCChhhCEeCCccHHHHHHHHHHhCCCCeEEEEeCCCH--HHHHHHhcC----C--cE
Confidence            89999999999999994    468999999999999999999999999999999987653  345555432    1  34


Q ss_pred             EEEccCCcChHHHHHHHHhcCCC--CcEEEEcCC--cccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCccc
Q 012817           81 VATVPEDVGTAGALRAIAHHLTA--KDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK  156 (456)
Q Consensus        81 ~~~~~~~~gt~~al~~~~~~l~~--~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~  156 (456)
                      +..++...|++++++.+++++.+  +.++++.||  ++.+.+++++++.|.+.++++++++...+  +            
T Consensus        69 ~~~~~~~~g~~~al~~a~~~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~--~------------  134 (458)
T PRK14354         69 FALQEEQLGTGHAVMQAEEFLADKEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAE--N------------  134 (458)
T ss_pred             EEEcCCCCCHHHHHHHHHHHhcccCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcC--C------------
Confidence            55555678999999999888753  569999999  46677899999999888888887766543  1            


Q ss_pred             CCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCc----cccc
Q 012817          157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD----KFQS  232 (456)
Q Consensus       157 ~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~----~~~s  232 (456)
                         +..|+++..|+++++ ..+.+     |+.. ...        .....++++|+|+|+++.|.+.+++..    ....
T Consensus       135 ---~~~~g~v~~d~~~~V-~~~~e-----k~~~-~~~--------~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~  196 (458)
T PRK14354        135 ---PTGYGRIIRNENGEV-EKIVE-----QKDA-TEE--------EKQIKEINTGTYCFDNKALFEALKKISNDNAQGEY  196 (458)
T ss_pred             ---CCCceEEEEcCCCCE-EEEEE-----CCCC-ChH--------HhcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcE
Confidence               445788878877664 44432     2110 000        112456899999999986555543211    0111


Q ss_pred             cccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcch
Q 012817          233 LKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKY  312 (456)
Q Consensus       233 ~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~  312 (456)
                      ...|.++.+++.+                                                      .++.+|  ...++
T Consensus       197 ~~~d~~~~l~~~g------------------------------------------------------~~v~~~--~~~g~  220 (458)
T PRK14354        197 YLTDVIEILKNEG------------------------------------------------------EKVGAY--QTEDF  220 (458)
T ss_pred             eHHHHHHHHHHCC------------------------------------------------------CeEEEE--ecCCc
Confidence            2356666665432                                                      223344  23334


Q ss_pred             hh--cccCHHHHHHHhHhh---hc-----cccc-cCC-CcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEee
Q 012817          313 CV--RLNSIQAFMDINRDV---IG-----EANH-LSG-YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR  380 (456)
Q Consensus       313 ~~--~i~~~~~y~~~~~~~---l~-----~~~~-~~~-~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~  380 (456)
                      |.  ++++++++..++..+   +.     .... +.. ..++++++.|++++.|++++.|++++.||++|.|++++.|.+
T Consensus       221 ~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~  300 (458)
T PRK14354        221 EESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVD  300 (458)
T ss_pred             ceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCCCEEeCCeEEecceEECCCCEECCCcEEec
Confidence            44  556777776654322   11     1111 111 123455666666666666666666777777777777777777


Q ss_pred             eEECCCCEECCCcEEeCeEECCCCEECCCcEEc-CeEECCCCEECCCcEecCeEECCCC
Q 012817          381 SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGY  438 (456)
Q Consensus       381 s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~~~~i~~~~  438 (456)
                      ++||++|.|++ +.+.+++|+++|.||++|.|. +++|++++.|++++.|.++.|++++
T Consensus       301 ~~ig~~~~I~~-~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~  358 (458)
T PRK14354        301 STIGDGVTITN-SVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGT  358 (458)
T ss_pred             cEECCCCEEEE-EEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCC
Confidence            77777776653 455566666666666666665 5666666666555555443333333

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=8.6e-36  Score=302.74  Aligned_cols=197  Identities=21%  Similarity=0.342  Sum_probs=132.1

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |+++|||||||.|+||++    .+||+|+|++|+|||+|+++.|..+ +++++|++++.  .+.+.+++.+.+.   .+.
T Consensus         1 m~~~aiIlAaG~GtRl~~----~~pK~Llpi~gkPli~~~i~~l~~~-~~~i~Ivv~~~--~~~i~~~~~~~~~---~v~   70 (430)
T PRK14359          1 MKLSIIILAAGKGTRMKS----SLPKVLHTICGKPMLFYILKEAFAI-SDDVHVVLHHQ--KERIKEAVLEYFP---GVI   70 (430)
T ss_pred             CCccEEEEcCCCCccCCC----CCCceeCEECCccHHHHHHHHHHHc-CCcEEEEECCC--HHHHHHHHHhcCC---ceE
Confidence            899999999999999954    6999999999999999999999887 68888888765  3466666654321   355


Q ss_pred             EEEccC--CcChHHHHHHHHhcCCCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCC
Q 012817           81 VATVPE--DVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK  158 (456)
Q Consensus        81 ~~~~~~--~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~  158 (456)
                      +..+++  ..|++++++.+..  ..++|++++||....  ..+.++.+.+.++++++.+.+.+  +              
T Consensus        71 ~~~~~~~~~~gt~~al~~~~~--~~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~~--~--------------  130 (430)
T PRK14359         71 FHTQDLENYPGTGGALMGIEP--KHERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHLA--D--------------  130 (430)
T ss_pred             EEEecCccCCCcHHHHhhccc--CCCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEcC--C--------------
Confidence            655443  3789999877432  257899999996321  23455556666777777666543  1              


Q ss_pred             CCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCc----cccccc
Q 012817          159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD----KFQSLK  234 (456)
Q Consensus       159 ~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~----~~~s~~  234 (456)
                       +..|+.+..| +++ +..+.++....+              -...+.+.++|+|+|++++|..+++...    ....+.
T Consensus       131 -~~~~g~v~~d-~g~-v~~i~e~~~~~~--------------~~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l  193 (430)
T PRK14359        131 -PKGYGRVVIE-NGQ-VKKIVEQKDANE--------------EELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYL  193 (430)
T ss_pred             -CccCcEEEEc-CCe-EEEEEECCCCCc--------------ccccceEEEeEEEEEEHHHHHHHHHhcCcccccCceeh
Confidence             4457877665 444 455543211100              0112457899999999999987754221    122234


Q ss_pred             cchhHHHhHh
Q 012817          235 QDVLPYLVRS  244 (456)
Q Consensus       235 ~d~l~~l~~~  244 (456)
                      +|+++.+++.
T Consensus       194 ~d~i~~l~~~  203 (430)
T PRK14359        194 TDIIALAIEK  203 (430)
T ss_pred             hhHHHHHHHc
Confidence            5777777654

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=1.8e-35  Score=301.82  Aligned_cols=176  Identities=22%  Similarity=0.396  Sum_probs=131.5

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~   82 (456)
                      |+|||||||.|+||+    ..+||+|+|++|||||+|+|+++.+.+ ++++|++++..  +.+.+++.+      .+.+.
T Consensus         1 m~avIlA~G~gtRl~----~~~pK~l~~v~gkpli~~~l~~l~~~~-~~i~vv~~~~~--~~i~~~~~~------~~~~~   67 (448)
T PRK14357          1 MRALVLAAGKGTRMK----SKIPKVLHKISGKPMINWVIDTAKKVA-QKVGVVLGHEA--ELVKKLLPE------WVKIF   67 (448)
T ss_pred             CeEEEECCCCCccCC----CCCCceeeEECCeeHHHHHHHHHHhcC-CcEEEEeCCCH--HHHHHhccc------ccEEE
Confidence            789999999999994    468999999999999999999999875 88999887553  345554432      24455


Q ss_pred             EccCCcChHHHHHHHHhcCC-CCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCC
Q 012817           83 TVPEDVGTAGALRAIAHHLT-AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK  159 (456)
Q Consensus        83 ~~~~~~gt~~al~~~~~~l~-~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~  159 (456)
                      .++...|++++++.+++++. ++.+++++||.  +.+.+++++++.|++.++++++++.+..                 +
T Consensus        68 ~~~~~~g~~~ai~~a~~~l~~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~-----------------~  130 (448)
T PRK14357         68 LQEEQLGTAHAVMCARDFIEPGDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLE-----------------D  130 (448)
T ss_pred             ecCCCCChHHHHHHHHHhcCcCCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcC-----------------C
Confidence            55667899999999998885 46799999994  6777899999999988999988877653                 1


Q ss_pred             CCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHh
Q 012817          160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (456)
Q Consensus       160 ~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~  225 (456)
                      +..|+++.+| +++ + .+.+     ++.. +..        ....+++++|+|+|++++|.++++
T Consensus       131 ~~~~g~v~~d-~g~-v-~~~e-----~~~~-~~~--------~~~~~~~~~GiYv~~~~~l~~~~~  179 (448)
T PRK14357        131 PTGYGRIIRD-GGK-Y-RIVE-----DKDA-PEE--------EKKIKEINTGIYVFSGDFLLEVLP  179 (448)
T ss_pred             CCCcEEEEEc-CCe-E-EEEE-----CCCC-ChH--------HhcCcEEEeEEEEEEHHHHHHHHH
Confidence            5578988877 444 3 3332     1100 000        001346899999999999766554

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=5e-34  Score=291.42  Aligned_cols=182  Identities=24%  Similarity=0.364  Sum_probs=136.4

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~   82 (456)
                      +.+||||||.|+||+    ...||+|+|++|||||+|+|++|.++++.+++|++++..  +.+.+++.+.    ..+.++
T Consensus         2 ~~~iIlAaG~gsR~~----~~~pK~ll~v~gkpli~~~l~~l~~~g~~~iivvv~~~~--~~i~~~~~~~----~~i~~v   71 (450)
T PRK14360          2 LAVAILAAGKGTRMK----SSLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQA--EEVEQSLAHL----PGLEFV   71 (450)
T ss_pred             ceEEEEeCCCCccCC----CCCChhcCEECChhHHHHHHHHHHhCCCCeEEEEECCCH--HHHHHHhccc----CCeEEE
Confidence            789999999999994    468999999999999999999999999999999988653  3455554331    135566


Q ss_pred             EccCCcChHHHHHHHHhcCC--CCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCC
Q 012817           83 TVPEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK  158 (456)
Q Consensus        83 ~~~~~~gt~~al~~~~~~l~--~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~  158 (456)
                      .++...|++++++.+++.+.  ++++++++||.  +.+.+++++++.|++.+++++++..+..  +              
T Consensus        72 ~~~~~~G~~~sv~~~~~~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~--~--------------  135 (450)
T PRK14360         72 EQQPQLGTGHAVQQLLPVLKGFEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLP--N--------------  135 (450)
T ss_pred             EeCCcCCcHHHHHHHHHHhhccCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecC--C--------------
Confidence            55566899999998888774  35699999995  6677899999999988888877665432  2              


Q ss_pred             CCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhc
Q 012817          159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ  226 (456)
Q Consensus       159 ~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~  226 (456)
                       +..|+.+.+|+++++ ..+.++.....              ....++++++|+|+|+++.|.+++++
T Consensus       136 -~~~~g~~~~d~~g~v-~~~~ek~~~~~--------------~~~~~~~~~~Giy~f~~~~l~~~~~~  187 (450)
T PRK14360        136 -PKGYGRVFCDGNNLV-EQIVEDRDCTP--------------AQRQNNRINAGIYCFNWPALAEVLPK  187 (450)
T ss_pred             -CCCccEEEECCCCCE-EEEEECCCCCh--------------hHhcCcEEEEEEEEEEHHHHHHHHhh
Confidence             456888888887764 44443211100              01135688999999999888777643

>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=3.7e-34  Score=256.96  Aligned_cols=235  Identities=21%  Similarity=0.345  Sum_probs=190.4

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~   82 (456)
                      |++||||||.||||+|+ |...||+|+|+.+||||+|.|+.|..+|+++|.|++++++ ...+++++.+......+++|.
T Consensus         1 mKgiILAgG~GTRL~Pl-T~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~-~~~~~~llGdgs~~gv~itY~   78 (286)
T COG1209           1 MKGVILAGGSGTRLRPL-TRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPED-KPTFKELLGDGSDFGVDITYA   78 (286)
T ss_pred             CCcEEecCcCccccccc-cccCCcccceecCcchhHhHHHHHHHcCCceEEEEecCCc-hhhhhhhhcCccccCcceEEE
Confidence            78999999999999999 9999999999999999999999999999999999998654 346777666644445678899


Q ss_pred             EccCCcChHHHHHHHHhcCCCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCCc
Q 012817           83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGR  162 (456)
Q Consensus        83 ~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (456)
                      .|+++.|.++|+..+.+++.+++|+++.||.++..++.++++.+.+.+++++++++++.                 +|++
T Consensus        79 ~Q~~p~GlA~Av~~a~~fv~~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~-----------------dP~r  141 (286)
T COG1209          79 VQPEPDGLAHAVLIAEDFVGDDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVD-----------------DPSR  141 (286)
T ss_pred             ecCCCCcHHHHHHHHHhhcCCCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcC-----------------Cccc
Confidence            99999999999999999998899999999976666999999999998899999998876                 2889


Q ss_pred             ccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCcc--ccccccchhHH
Q 012817          163 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK--FQSLKQDVLPY  240 (456)
Q Consensus       163 ~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~--~~s~~~d~l~~  240 (456)
                      ||++.+|++++ +..+.|     |+.             .+.|+++-+|+|+|.+++|..+-.-.++  .+--.+|.+.+
T Consensus       142 fGV~e~d~~~~-v~~l~E-----KP~-------------~P~SNlAvtGlY~~d~~Vf~~~~~ikPS~RGElEITd~i~~  202 (286)
T COG1209         142 YGVVEFDEDGK-VIGLEE-----KPK-------------EPKSNLAVTGLYFYDPSVFEAIKQIKPSARGELEITDAIDL  202 (286)
T ss_pred             ceEEEEcCCCc-EEEeEE-----CCC-------------CCCCceeEEEEEEeChHHHHHHHcCCCCCCCceEehHHHHH
Confidence            99999998884 556653     321             3468999999999999999755321111  12223688888


Q ss_pred             HhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcchhhcccCHH
Q 012817          241 LVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQ  320 (456)
Q Consensus       241 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~~~i~~~~  320 (456)
                      +++++..                                                      ...  ....++|.+.++++
T Consensus       203 ~i~~G~~------------------------------------------------------~~~--~~~~G~WlDtGt~~  226 (286)
T COG1209         203 YIEKGYL------------------------------------------------------VVA--ILIRGWWLDTGTPE  226 (286)
T ss_pred             HHHcCcE------------------------------------------------------EEE--EEccceEEecCChh
Confidence            8775532                                                      111  13456999999999


Q ss_pred             HHHHHhHhhhc
Q 012817          321 AFMDINRDVIG  331 (456)
Q Consensus       321 ~y~~~~~~~l~  331 (456)
                      ++.++++.+..
T Consensus       227 slleA~~~i~~  237 (286)
T COG1209         227 SLLEANNFVRT  237 (286)
T ss_pred             hHHHHHHHHHH
Confidence            99999988765

>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit

Probab=100.00  E-value=9.8e-32  Score=256.46  Aligned_cols=235  Identities=15%  Similarity=0.294  Sum_probs=173.4

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhc--------
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY--------   73 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~--------   73 (456)
                      +|+|||||||.|+||+|+ |...||||+|++|||||+|+++++..+|+++++|++++.  .+.+.+|+.+.+        
T Consensus         3 ~mkavILAaG~GTRL~Pl-T~~~PKpLvpV~gkPiI~~vl~~l~~~Gi~~ivivv~~~--~~~i~~~~~~~~~~~~~~~~   79 (297)
T TIGR01105         3 NLKAVIPVAGLGMHMLPA-TKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHAS--KNAVENHFDTSYELESLLEQ   79 (297)
T ss_pred             ceEEEEECCCCCcccCcc-cCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEecCC--hHHHHHHHhchHHHHHHHHH
Confidence            699999999999999999 999999999999999999999999999999999999865  335666554311        


Q ss_pred             --------------cCccceEEEEccCCcChHHHHHHHHhcCCCCcEEEEcCCcccC--------CChhHHHHHHHhcCc
Q 012817           74 --------------VDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD--------VPPGAVTAAHRRHDA  131 (456)
Q Consensus        74 --------------~~~~~i~~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~--------~~l~~~l~~~~~~~a  131 (456)
                                    .....+.++.++++.||++|++.+.+.+.+++|+++.||.+++        .++.++++.|.+.++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l~~~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~  159 (297)
T TIGR01105        80 RVKRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVGDNPFVVVLPDIIIDDATADPLRYNLAAMIARFNETGR  159 (297)
T ss_pred             hcchhhhhhhhhcCCCCceEEEeeCCCcCchHHHHHHHHHHhCCCCEEEEECCeeccccccccchhHHHHHHHHHHHhCC
Confidence                          0123466777888899999999999999767899999998876        489999999987777


Q ss_pred             eEEEEEeecccCCCccCCCCCCcccCCCCCcccEEEec----CCCcE--EEEeecccccccccccchHHHhhcceeEEec
Q 012817          132 VVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMD----PTKQF--LLHIATGAELEKDTRIRKSILRAVGQMDIRA  205 (456)
Q Consensus       132 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~d----~~~~~--l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~  205 (456)
                      .++++. ..+ ++               +.+||++.+|    +++++  +..+.|     |+.. +         ....+
T Consensus       160 ~~~~~~-~~~-~~---------------~~~yGvv~~~~~~d~~g~v~~I~~~~E-----KP~~-~---------~~~~s  207 (297)
T TIGR01105       160 SQVLAK-RMP-GD---------------LSEYSVIQTKEPLDREGKVSRIVEFIE-----KPDQ-P---------QTLDS  207 (297)
T ss_pred             cEEEEE-EcC-CC---------------CccceEEEecccccCCCCeeeEeEEEE-----CCCC-c---------ccCCc
Confidence            664433 322 12               5679999984    34542  344443     3210 0         01246


Q ss_pred             CCccceEEeechHHHHHHHhcCcc---ccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcc
Q 012817          206 DLMDAHMYAFNRSVLQEVLDQKDK---FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSF  282 (456)
Q Consensus       206 ~~~~~giYi~~~~vl~~~~~~~~~---~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (456)
                      +++++|+|+|++++|..+ +....   .....+|+++.+++++                                     
T Consensus       208 ~~~~~GiYi~~~~i~~~l-~~~~~~~~ge~~ltd~i~~l~~~~-------------------------------------  249 (297)
T TIGR01105       208 DLMAVGRYVLSADIWAEL-ERTEPGAWGRIQLTDAIAELAKKQ-------------------------------------  249 (297)
T ss_pred             CEEEEEEEEECHHHHHHH-hcCCCCCCCeeeHHHHHHHHHhcC-------------------------------------
Confidence            789999999999999755 33211   1112358888887532                                     


Q ss_pred             cccccCCCCCCCCCCcceeeEEEEecCcchhhcccCHHHHHHHhHhh
Q 012817          283 HELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV  329 (456)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~~~i~~~~~y~~~~~~~  329 (456)
                                        ++.+|  ...++|.+++++++|.+++.++
T Consensus       250 ------------------~v~~~--~~~g~w~DiG~p~~~~~a~~~~  276 (297)
T TIGR01105       250 ------------------SVDAM--LMTGDSYDCGKKMGYMQAFVKY  276 (297)
T ss_pred             ------------------CEEEE--EeccEEECCCCHHHHHHHHHHH
Confidence                              23445  3468999999999999998875

GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose

>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry

Probab=100.00  E-value=1.2e-31  Score=252.17  Aligned_cols=237  Identities=28%  Similarity=0.539  Sum_probs=180.6

Q ss_pred             eEEEEecCCCCCCcCCCCCCCcccccccCCc-chHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (456)
Q Consensus         4 ~aiIlagG~g~rl~pl~~~~~pK~llpi~gk-pli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~   82 (456)
                      +|||||||.|+||+|+ |...||||+|++|+ |||+|+|++|.++|++++++++.... .+++.+++.+......++.++
T Consensus         1 kavIla~G~GtRl~pl-t~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~-~~~i~~~~~~~~~~~~~i~~i   78 (248)
T PF00483_consen    1 KAVILAGGKGTRLRPL-TDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYK-EEQIEEHLGSGYKFGVKIEYI   78 (248)
T ss_dssp             EEEEEEESCCGGGTTT-TTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTT-HHHHHHHHTTSGGGTEEEEEE
T ss_pred             CEEEECCCCCccCchh-hhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecc-cccccccccccccccccceee
Confidence            6999999999999999 99999999999999 99999999999999999666665332 346777776643223457788


Q ss_pred             EccCCcChHHHHHHHHhcCCCCc----EEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCC
Q 012817           83 TVPEDVGTAGALRAIAHHLTAKD----VLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK  158 (456)
Q Consensus        83 ~~~~~~gt~~al~~~~~~l~~~~----~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~  158 (456)
                      .++++.||+++++.+.+.+..+.    |++++||++++.++.++++.|++.++++++.+...+..+              
T Consensus        79 ~~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------------  144 (248)
T PF00483_consen   79 VQPEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVED--------------  144 (248)
T ss_dssp             EESSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESSG--------------
T ss_pred             ecccccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhccccccccccccccccc--------------
Confidence            78888999999999998887554    999999999999999999999999885444333333222              


Q ss_pred             CCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHh---cCcccccccc
Q 012817          159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD---QKDKFQSLKQ  235 (456)
Q Consensus       159 ~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~---~~~~~~s~~~  235 (456)
                       ++.||++.+|++++ +..+.|     |+-.            ...+.++++|+|+|++++|..+++   +......+..
T Consensus       145 -~~~~g~v~~d~~~~-V~~~~E-----KP~~------------~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~  205 (248)
T PF00483_consen  145 -PSRYGVVEVDEDGR-VIRIVE-----KPDN------------PNASNLINTGIYIFKPEIFDFLLEMIKENARGEDFLT  205 (248)
T ss_dssp             -GGGSEEEEEETTSE-EEEEEE-----SCSS------------HSHSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHH
T ss_pred             -cccceeeeecccee-EEEEec-----cCcc------------cccceeccCceEEEcchHHHHHhhhhhccchhhhHHH
Confidence             56799999998775 455543     3210            001668899999999999987743   3334566678


Q ss_pred             chhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcc--hh
Q 012817          236 DVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSK--YC  313 (456)
Q Consensus       236 d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~--~~  313 (456)
                      |+++.+++++.                                                      ...+|  ...+  +|
T Consensus       206 d~i~~~~~~~~------------------------------------------------------~~~~~--~~~~~~~w  229 (248)
T PF00483_consen  206 DAIPKLLEQGK------------------------------------------------------KVYAF--IFEGNAYW  229 (248)
T ss_dssp             HHHHHHHHTTC------------------------------------------------------EEEEE--EHSSEE-E
T ss_pred             HHHHHHHHcCC------------------------------------------------------ceEEE--EecCCeEE
Confidence            99999887542                                                      12233  2344  89


Q ss_pred             hcccCHHHHHHHhHhhhc
Q 012817          314 VRLNSIQAFMDINRDVIG  331 (456)
Q Consensus       314 ~~i~~~~~y~~~~~~~l~  331 (456)
                      .+++++++|++++++++.
T Consensus       230 ~dig~~~~~~~a~~~~~~  247 (248)
T PF00483_consen  230 IDIGTPEDYLEANMDLLN  247 (248)
T ss_dssp             EETSSHHHHHHHHHHHHS
T ss_pred             EECCCHHHHHHHHHHHhc
Confidence            999999999999998864

; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....

>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

Probab=99.97  E-value=1.6e-30  Score=242.19  Aligned_cols=228  Identities=21%  Similarity=0.401  Sum_probs=176.6

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~   82 (456)
                      |++||||||.|+||+|+ |...||+|+|++|+|||+|+++++.++|+++++|++++..  +.+.+++.++. ...++.+.
T Consensus         1 m~~iIlAaG~g~R~~~l-t~~~pK~llpv~g~pli~~~l~~l~~~g~~~v~iv~~~~~--~~~~~~l~~~~-~~~~~~i~   76 (233)
T cd06425           1 MKALILVGGYGTRLRPL-TLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRP--EDMVPFLKEYE-KKLGIKIT   76 (233)
T ss_pred             CcEEEecCCCccccCcc-ccCCCCccCeECCcchHHHHHHHHHHCCCcEEEEEeeeCH--HHHHHHHhccc-ccCCeEEE
Confidence            78999999999999999 8999999999999999999999999999999999998653  35556665431 12234444


Q ss_pred             E--ccCCcChHHHHHHHHhcCCC--CcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCC
Q 012817           83 T--VPEDVGTAGALRAIAHHLTA--KDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK  158 (456)
Q Consensus        83 ~--~~~~~gt~~al~~~~~~l~~--~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~  158 (456)
                      .  +....|++++++.+.+.+..  +++++++||.+++.++.++++.|++.++++++++.+.+.                
T Consensus        77 ~~~~~~~~G~~~al~~a~~~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------  140 (233)
T cd06425          77 FSIETEPLGTAGPLALARDLLGDDDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED----------------  140 (233)
T ss_pred             eccCCCCCccHHHHHHHHHHhccCCCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC----------------
Confidence            3  44568999999999888753  679999999999999999999999999999988876431                


Q ss_pred             CCCcccEEEecC-CCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCccccccccch
Q 012817          159 KPGRYNIIGMDP-TKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDV  237 (456)
Q Consensus       159 ~~~~~~iv~~d~-~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~~~s~~~d~  237 (456)
                       +..|+++.+|+ +++ +..+.+     |+.             ...++++++|+|+|++++|..+. .  ...++..|+
T Consensus       141 -~~~~g~v~~d~~~~~-v~~~~e-----kp~-------------~~~~~~~~~Giyi~~~~~l~~l~-~--~~~~~~~~~  197 (233)
T cd06425         141 -PSKYGVVVHDENTGR-IERFVE-----KPK-------------VFVGNKINAGIYILNPSVLDRIP-L--RPTSIEKEI  197 (233)
T ss_pred             -ccccCeEEEcCCCCE-EEEEEE-----CCC-------------CCCCCEEEEEEEEECHHHHHhcc-c--Ccccchhhh
Confidence             45689999987 554 555543     211             11256789999999999997553 2  234566788


Q ss_pred             hHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcchhhccc
Q 012817          238 LPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLN  317 (456)
Q Consensus       238 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~~~i~  317 (456)
                      ++.+++++                                                       ++.+|  +..++|.+++
T Consensus       198 ~~~l~~~~-------------------------------------------------------~v~~~--~~~g~w~dig  220 (233)
T cd06425         198 FPKMASEG-------------------------------------------------------QLYAY--ELPGFWMDIG  220 (233)
T ss_pred             HHHHHhcC-------------------------------------------------------CEEEE--eeCCEEEcCC
Confidence            99887532                                                       23455  4578999999


Q ss_pred             CHHHHHHHhHhhh
Q 012817          318 SIQAFMDINRDVI  330 (456)
Q Consensus       318 ~~~~y~~~~~~~l  330 (456)
                      ++++|+++++.+|
T Consensus       221 t~~~~~~a~~~~l  233 (233)
T cd06425         221 QPKDFLKGMSLYL  233 (233)
T ss_pred             CHHHHHHHHHHhC
Confidence            9999999987653

GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.

>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase

Probab=99.97  E-value=2e-30  Score=244.97  Aligned_cols=230  Identities=24%  Similarity=0.385  Sum_probs=172.9

Q ss_pred             EEEEecC--CCCCCcCCCCCCCcccccccCCcchHHHHHHHHHH-CCCCEEEEEecCchhhHHHHhhhhhhc-cCccceE
Q 012817            5 VVVLAGG--TSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLEL-SNIKDLIVVVEGADAALRVGGWISAAY-VDRLHVE   80 (456)
Q Consensus         5 aiIlagG--~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~-~gi~~v~iv~~~~~~~~~i~~~~~~~~-~~~~~i~   80 (456)
                      |||||||  .|+||+|+ |..+||||+|++|||||+|+|++|.+ +|+++++|++++..  +.+..++.+.. .....+.
T Consensus         1 ~iIla~G~~~GtRl~pl-t~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~--~~i~~~l~~~~~~~~~~i~   77 (257)
T cd06428           1 AVILVGGPQKGTRFRPL-SLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPE--SVFSDFISDAQQEFNVPIR   77 (257)
T ss_pred             CEEEccCCCCCcccCCc-cCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCH--HHHHHHHHhcccccCceEE
Confidence            6899999  89999999 99999999999999999999999999 69999999998642  35566654421 1123344


Q ss_pred             EEEccCCcChHHHHHHHHhcCC---CCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccC
Q 012817           81 VATVPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT  157 (456)
Q Consensus        81 ~~~~~~~~gt~~al~~~~~~l~---~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~  157 (456)
                      +..+.+..||+++++.+.+.+.   +++|+|++||++++.++.++++.|++.++++|+++.+.+.++             
T Consensus        78 ~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~-------------  144 (257)
T cd06428          78 YLQEYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQ-------------  144 (257)
T ss_pred             EecCCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccccc-------------
Confidence            5445557899999999988774   367999999999999999999999999999998887653222             


Q ss_pred             CCCCcccEEEec-CCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcC---------
Q 012817          158 KKPGRYNIIGMD-PTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK---------  227 (456)
Q Consensus       158 ~~~~~~~iv~~d-~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~---------  227 (456)
                        +..|+++.+| ++++ +..+.+     |+.             ...++++++|+|+|++++|..+....         
T Consensus       145 --~~~yg~v~~d~~~g~-v~~~~E-----kp~-------------~~~~~~~~~Giyi~~~~~~~~i~~~~~~~~~e~~~  203 (257)
T cd06428         145 --ASNYGCIVEDPSTGE-VLHYVE-----KPE-------------TFVSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQL  203 (257)
T ss_pred             --cccccEEEEeCCCCe-EEEEEe-----CCC-------------CcccceEEEEEEEECHHHHHHHhhhcccccccccc
Confidence              5578999888 4554 556654     211             11356899999999999986554211         


Q ss_pred             ---------ccccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCc
Q 012817          228 ---------DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRR  298 (456)
Q Consensus       228 ---------~~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (456)
                               ..+.++.+|+++.++++                                                      
T Consensus       204 ~~~~~~~~~~~~~~~~~d~~~~l~~~------------------------------------------------------  229 (257)
T cd06428         204 GDDNNREGRAEVIRLEQDVLTPLAGS------------------------------------------------------  229 (257)
T ss_pred             ccccccccccceeeehhhhhhHHhcc------------------------------------------------------
Confidence                     12233445777766542                                                      


Q ss_pred             ceeeEEEEecCcchhhcccCHHHHHHHhHh
Q 012817          299 THKCCVYIASNSKYCVRLNSIQAFMDINRD  328 (456)
Q Consensus       299 ~~~~~~yi~~~~~~~~~i~~~~~y~~~~~~  328 (456)
                       .++.+|  ...+||.+++++++|+++|+.
T Consensus       230 -~~v~~~--~~~g~w~dig~~~~~~~a~~~  256 (257)
T cd06428         230 -GKLYVY--KTDDFWSQIKTAGSAIYANRL  256 (257)
T ss_pred             -CCEEEe--cCCCeeecCCCHHHHHhHhhc
Confidence             123455  668999999999999999875

N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre

>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional

Probab=99.97  E-value=5.7e-30  Score=243.75  Aligned_cols=207  Identities=20%  Similarity=0.332  Sum_probs=157.9

Q ss_pred             CC-ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817            1 MD-FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (456)
Q Consensus         1 m~-~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i   79 (456)
                      |+ |+|||||||.|+||+|+ |...||||+|++|||||+|+|++|..+|+++|+|++.+.. .+.+++++.+......++
T Consensus         1 m~~~kaIILAgG~GtRL~Pl-T~~~pK~Llpv~gkPmI~~~l~~l~~aGi~~I~ii~~~~~-~~~~~~~l~~g~~~g~~i   78 (292)
T PRK15480          1 MKTRKGIILAGGSGTRLYPV-TMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQD-TPRFQQLLGDGSQWGLNL   78 (292)
T ss_pred             CCceEEEEECCCcccccCcc-cCCCCceEeEECCEEHHHHHHHHHHHCCCCEEEEEecCCc-hHHHHHHHcCccccCcee
Confidence            65 99999999999999999 9999999999999999999999999999999998876442 245666665432223456


Q ss_pred             EEEEccCCcChHHHHHHHHhcCCCCcEEEEcCC-cccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCC
Q 012817           80 EVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD-LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK  158 (456)
Q Consensus        80 ~~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D-~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~  158 (456)
                      .+..++.+.|+++++..+.+.+.+++++++.|| ++++.++.++++.|.+.++++|+++++++                 
T Consensus        79 ~y~~q~~~~Gta~Al~~a~~~i~~~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~-----------------  141 (292)
T PRK15480         79 QYKVQPSPDGLAQAFIIGEEFIGGDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVN-----------------  141 (292)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcC-----------------
Confidence            677777789999999999998876678888899 45688999999999888888888877653                 


Q ss_pred             CCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCcc--ccccccc
Q 012817          159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK--FQSLKQD  236 (456)
Q Consensus       159 ~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~--~~s~~~d  236 (456)
                      +|.+||++.+|+++++ ..+.|     |+.             .+.++++++|+|+|+++++..+..-..+  .+-..+|
T Consensus       142 ~p~~yGvv~~d~~g~v-~~i~E-----KP~-------------~p~s~~a~~GiY~~~~~v~~~~~~~~~~~~ge~~itd  202 (292)
T PRK15480        142 DPERYGVVEFDQNGTA-ISLEE-----KPL-------------QPKSNYAVTGLYFYDNDVVEMAKNLKPSARGELEITD  202 (292)
T ss_pred             CcccCcEEEECCCCcE-EEEEE-----CCC-------------CCCCCEEEEEEEEEChHHHHHHhhcCCCCCCeeEhHH
Confidence            2668999999987764 45543     321             1247789999999999998754211111  1111257


Q ss_pred             hhHHHhHhc
Q 012817          237 VLPYLVRSQ  245 (456)
Q Consensus       237 ~l~~l~~~~  245 (456)
                      +++.+++++
T Consensus       203 ~~~~~l~~g  211 (292)
T PRK15480        203 INRIYMEQG  211 (292)
T ss_pred             HHHHHHhcC
Confidence            888776643

>PRK10122 GalU regulator GalF; Provisional

Probab=99.97  E-value=5.1e-30  Score=245.38  Aligned_cols=238  Identities=15%  Similarity=0.270  Sum_probs=174.6

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhc--------
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY--------   73 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~--------   73 (456)
                      +|+|||||||.|+||+|+ |..+||||+|++|||||+|+++++.++|+++|+|++++..  +.+.+|+...+        
T Consensus         3 ~mkavIlAaG~GtRl~Pl-T~~~PK~llpi~gkpiI~~~l~~l~~~Gi~~i~iv~~~~~--~~i~~~~~~~~~l~~~~~~   79 (297)
T PRK10122          3 NLKAVIPVAGLGMHMLPA-TKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASK--NAVENHFDTSYELESLLEQ   79 (297)
T ss_pred             ceEEEEECCcCCcccCcc-cCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEcCCCh--HHHHHHHhcchhHHHHHhh
Confidence            589999999999999999 9999999999999999999999999999999999998653  35555553211        


Q ss_pred             --------------cCccceEEEEccCCcChHHHHHHHHhcCCCCcEEEEcCCcccC--------CChhHHHHHHHhcCc
Q 012817           74 --------------VDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD--------VPPGAVTAAHRRHDA  131 (456)
Q Consensus        74 --------------~~~~~i~~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~--------~~l~~~l~~~~~~~a  131 (456)
                                    .....+.++.++++.||+++++.+.+++.+++|+++.||.+++        .++.++++.|.+.++
T Consensus        80 ~~k~~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~a~~~l~~~~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~~~  159 (297)
T PRK10122         80 RVKRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAIGDNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGR  159 (297)
T ss_pred             cchhhhHHhhhhccCCCceEEEeecCCcCchHHHHHHHHHHcCCCCEEEEECCeeccCccccccchhHHHHHHHHHHhCC
Confidence                          0123456777778899999999999998767899999997765        479999999988887


Q ss_pred             eEEEEEeecccCCCccCCCCCCcccCCCCCcccEEEec----CCCc--EEEEeecccccccccccchHHHhhcceeEEec
Q 012817          132 VVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMD----PTKQ--FLLHIATGAELEKDTRIRKSILRAVGQMDIRA  205 (456)
Q Consensus       132 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~d----~~~~--~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~  205 (456)
                      +++++ ...+. +               +..||++.+|    +++.  .+..+.+     |+.. +         ....+
T Consensus       160 ~~~~~-~~~~~-~---------------~~~yGvv~~d~~~~~~g~v~~I~~~~E-----Kp~~-~---------~~~~s  207 (297)
T PRK10122        160 SQVLA-KRMPG-D---------------LSEYSVIQTKEPLDREGKVSRIVEFIE-----KPDQ-P---------QTLDS  207 (297)
T ss_pred             cEEEE-EECCC-C---------------CCCceEEEecCcccCCCCeeeEEEEEE-----CCCC-c---------ccCCc
Confidence            75443 33321 2               5679999986    3443  2344443     3210 0         01136


Q ss_pred             CCccceEEeechHHHHHHHhcCc-c-ccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCccc
Q 012817          206 DLMDAHMYAFNRSVLQEVLDQKD-K-FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFH  283 (456)
Q Consensus       206 ~~~~~giYi~~~~vl~~~~~~~~-~-~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (456)
                      +++++|+|+|++++|..+..... . .....+|+++.+++++                                      
T Consensus       208 ~~~~~GiYi~~~~i~~~l~~~~~~~~~e~~ltd~i~~l~~~~--------------------------------------  249 (297)
T PRK10122        208 DLMAVGRYVLSADIWPELERTEPGAWGRIQLTDAIAELAKKQ--------------------------------------  249 (297)
T ss_pred             cEEEEEEEEECHHHHHHHHhCCCCCCCeeeHHHHHHHHHhCC--------------------------------------
Confidence            78999999999999986643111 1 1223358888876532                                      


Q ss_pred             ccccCCCCCCCCCCcceeeEEEEecCcchhhcccCHHHHHHHhHhh-hc
Q 012817          284 ELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV-IG  331 (456)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~~~i~~~~~y~~~~~~~-l~  331 (456)
                                       ++.+|  ...++|.+++++++|.+++.++ +.
T Consensus       250 -----------------~v~~~--~~~G~w~DiG~p~~~~~a~~~~~~~  279 (297)
T PRK10122        250 -----------------SVDAM--LMTGDSYDCGKKMGYMQAFVKYGLR  279 (297)
T ss_pred             -----------------CEEEE--EeCCEEEcCCCHHHHHHHHHHHHhc
Confidence                             23455  4578999999999999999887 54

>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=99.97  E-value=5.8e-30  Score=234.83  Aligned_cols=211  Identities=40%  Similarity=0.650  Sum_probs=169.7

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhc-cCc--cce
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-VDR--LHV   79 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~-~~~--~~i   79 (456)
                      |+|||||||.|+||+|+ +...||+|+|++|+|||+|+++++.++|+++++|++++.. .+.+++++.+.. ...  ...
T Consensus         1 ~~aVILAgG~g~R~~pl-t~~~pK~Llpv~g~pli~~~l~~l~~~g~~~iivv~~~~~-~~~i~~~l~~~~~~~~~~~~~   78 (214)
T cd04198           1 FQAVILAGGGGSRLYPL-TDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEE-QAEISTYLRSFPLNLKQKLDE   78 (214)
T ss_pred             CEEEEEeCCCCCcCCcc-ccCCCcccCEECCeeHHHHHHHHHHHCCCCeEEEEECHHH-HHHHHHHHHhcccccCcceeE
Confidence            68999999999999999 8899999999999999999999999999999999998543 234566554321 011  112


Q ss_pred             EEEEccCCcChHHHHHHHHhcCCCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCC
Q 012817           80 EVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK  159 (456)
Q Consensus        80 ~~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~  159 (456)
                      .+.......|++++++.+.+.+ .++|++++||++++.++.++++.|++.++.+|+++++.+..+...    +.+.+.+.
T Consensus        79 ~~~~~~~~~gt~~al~~~~~~i-~~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~~----~~~~~~~~  153 (214)
T cd04198          79 VTIVLDEDMGTADSLRHIRKKI-KKDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQK----GGKGKSKK  153 (214)
T ss_pred             EEecCCCCcChHHHHHHHHhhc-CCCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCccccc----CCcccccC
Confidence            2222345689999999998887 578999999999999999999999999999999988765432111    11112233


Q ss_pred             CCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHH
Q 012817          160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL  220 (456)
Q Consensus       160 ~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl  220 (456)
                      +..+.++.+|++++.++++.+..+.+++..++..+++++|++.+++++.|+|+|+|++++|
T Consensus       154 ~~~~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~  214 (214)
T cd04198         154 ADERDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL  214 (214)
T ss_pred             CCCCceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence            4567899999999899999876677778888999999999999999999999999999874

N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase

Probab=99.97  E-value=2.9e-29  Score=234.75  Aligned_cols=233  Identities=19%  Similarity=0.279  Sum_probs=172.0

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~   82 (456)
                      |+|||||||.|+||+|+ |..+||||+|++|+|||+|+|+++.++|+++++++++... .+.+.+++.+.......+.+.
T Consensus         1 m~~iIlAaG~gtRl~pl-t~~~pK~llpv~~~pli~~~l~~l~~~gi~~i~vv~~~~~-~~~~~~~l~~~~~~~~~i~~~   78 (240)
T cd02538           1 MKGIILAGGSGTRLYPL-TKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPED-LPLFKELLGDGSDLGIRITYA   78 (240)
T ss_pred             CeEEEEcCcCcccCCcc-ccCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEeCcch-HHHHHHHHhcccccCceEEEe
Confidence            68999999999999999 9999999999999999999999999999999999886432 235566664322122334444


Q ss_pred             EccCCcChHHHHHHHHhcCCCCcEEEEcCCc-ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCC
Q 012817           83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGDL-VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPG  161 (456)
Q Consensus        83 ~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~-i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (456)
                      .++...|++++++.+.+.+.+++++++.||. +.+.++.++++.|.+.++++++++.+.+  +               +.
T Consensus        79 ~~~~~~G~~~al~~a~~~~~~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------------~~  141 (240)
T cd02538          79 VQPKPGGLAQAFIIGEEFIGDDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVN--D---------------PE  141 (240)
T ss_pred             eCCCCCCHHHHHHHHHHhcCCCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECC--c---------------hh
Confidence            4455689999999999888767799999995 5567899999999888888888876643  1               45


Q ss_pred             cccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcC---ccccccccchh
Q 012817          162 RYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK---DKFQSLKQDVL  238 (456)
Q Consensus       162 ~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~---~~~~s~~~d~l  238 (456)
                      .|+++.+|++++ +..+.+++.                  ...++++++|+|+|++++|+. +++.   ........|++
T Consensus       142 ~~g~v~~d~~g~-v~~~~ekp~------------------~~~~~~~~~Giyi~~~~~l~~-l~~~~~~~~~~~~l~d~~  201 (240)
T cd02538         142 RYGVVEFDENGR-VLSIEEKPK------------------KPKSNYAVTGLYFYDNDVFEI-AKQLKPSARGELEITDVN  201 (240)
T ss_pred             cCceEEecCCCc-EEEEEECCC------------------CCCCCeEEEEEEEECHHHHHH-HHhcCCCCCCeEEhHHHH
Confidence            689999998775 455553211                  112457899999999999864 4321   11112235888


Q ss_pred             HHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcchhhcccC
Q 012817          239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNS  318 (456)
Q Consensus       239 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~~~i~~  318 (456)
                      +.+++++.                                                       ..++..+..+||.++++
T Consensus       202 ~~l~~~g~-------------------------------------------------------~~~~~~~~~g~w~digt  226 (240)
T cd02538         202 NEYLEKGK-------------------------------------------------------LSVELLGRGFAWLDTGT  226 (240)
T ss_pred             HHHHHhCC-------------------------------------------------------eEEEEeCCCcEEEeCCC
Confidence            88876431                                                       12232244589999999


Q ss_pred             HHHHHHHhHhh
Q 012817          319 IQAFMDINRDV  329 (456)
Q Consensus       319 ~~~y~~~~~~~  329 (456)
                      +++|+++++.+
T Consensus       227 ~~~~~~a~~~~  237 (240)
T cd02538         227 HESLLEASNFV  237 (240)
T ss_pred             HHHHHHHHHHH
Confidence            99999998754

This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.

>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form

Probab=99.97  E-value=4.4e-29  Score=237.38  Aligned_cols=203  Identities=20%  Similarity=0.339  Sum_probs=155.2

Q ss_pred             eEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEE
Q 012817            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT   83 (456)
Q Consensus         4 ~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~   83 (456)
                      +|||||||.|+||+|+ |...||||+|++|||||+|+|+.+..+|+++++|++.... .+.+++++.+.....+++.+..
T Consensus         1 kaIILAgG~GtRL~pl-T~~~pK~Llpv~gkPmI~~~L~~l~~aGi~~I~iv~~~~~-~~~~~~~lg~g~~~g~~i~~~~   78 (286)
T TIGR01207         1 KGIILAGGSGTRLYPI-TRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQD-TPRFQQLLGDGSQWGVNLSYAV   78 (286)
T ss_pred             CEEEECCCCCccCCcc-cCCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEecCCc-HHHHHHHhccccccCceEEEEE
Confidence            5899999999999999 9999999999999999999999999999999998886432 2355666654322234566676


Q ss_pred             ccCCcChHHHHHHHHhcCCCCcEEEEcCC-cccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCCc
Q 012817           84 VPEDVGTAGALRAIAHHLTAKDVLVVSGD-LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGR  162 (456)
Q Consensus        84 ~~~~~gt~~al~~~~~~l~~~~~lv~~~D-~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (456)
                      ++++.|++++++.+.+.+.+++++++.|| .+++.++.++++.|.+.++++++++.+++  +               |.+
T Consensus        79 q~~~~Gta~al~~a~~~l~~~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~--~---------------p~~  141 (286)
T TIGR01207        79 QPSPDGLAQAFIIGEDFIGGDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVS--D---------------PER  141 (286)
T ss_pred             ccCCCCHHHHHHHHHHHhCCCCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc--C---------------HHH
Confidence            77789999999999999876778888999 45688999999999888888888887654  2               667


Q ss_pred             ccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcC-c--cccccccchhH
Q 012817          163 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK-D--KFQSLKQDVLP  239 (456)
Q Consensus       163 ~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~-~--~~~s~~~d~l~  239 (456)
                      ||++.+|++++ +..+.|     |+.             ...++++++|+|+|++++++.+ .+. .  ...-..+|+++
T Consensus       142 yGvv~~d~~g~-V~~i~E-----Kp~-------------~~~s~~~~~GiYi~~~~i~~~l-~~~~~~~~ge~eitdv~~  201 (286)
T TIGR01207       142 YGVVEFDSNGR-AISIEE-----KPA-------------QPKSNYAVTGLYFYDNRVVEIA-RQLKPSARGELEITDLNR  201 (286)
T ss_pred             CceEEECCCCe-EEEEEE-----CCC-------------CCCCCEEEEEEEEEchHHHHHH-hhcCCCCCCcEeHHHHHH
Confidence            99999998775 445543     321             1236789999999999997644 321 1  11112358888


Q ss_pred             HHhHhc
Q 012817          240 YLVRSQ  245 (456)
Q Consensus       240 ~l~~~~  245 (456)
                      .+++++
T Consensus       202 ~~l~~g  207 (286)
T TIGR01207       202 VYLEEG  207 (286)
T ss_pred             HHHHcC
Confidence            877643

This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.

>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=99.97  E-value=4.3e-29  Score=229.75  Aligned_cols=203  Identities=27%  Similarity=0.445  Sum_probs=158.8

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCc-----c
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDR-----L   77 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~-----~   77 (456)
                      |+|||||||.|+||+|+ |..+||||+|++|+|||+|+|++|.++|+++|+|++++.  .+.+.+|+.+.....     .
T Consensus         1 ~~aiIla~G~g~Rl~pl-t~~~pK~llpi~g~piI~~~l~~l~~~Gi~~I~iv~~~~--~~~i~~~l~~~~~~~~~~~~~   77 (217)
T cd04197           1 LQAVVLADSFNRRFRPL-TKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSH--SDQIKEYIEKSKWSKPKSSLM   77 (217)
T ss_pred             CeEEEEcCCCccccccc-ccCCCceeeEECCEehHHHHHHHHHHCCCCeEEEEeCCC--HHHHHHHHhhccccccccCcc
Confidence            68999999999999999 999999999999999999999999999999999999864  346777776532111     2


Q ss_pred             ceEEEEccCCcChHHHHHHHH--hcCCCCcEEEEcCCcccCCChhHHHHHHHhc-----CceEEEEEeecccCCCccCCC
Q 012817           78 HVEVATVPEDVGTAGALRAIA--HHLTAKDVLVVSGDLVSDVPPGAVTAAHRRH-----DAVVTAMICSVPVSGLSEAGS  150 (456)
Q Consensus        78 ~i~~~~~~~~~gt~~al~~~~--~~l~~~~~lv~~~D~i~~~~l~~~l~~~~~~-----~a~~t~~~~~~~~~~~~~~~~  150 (456)
                      .+.+...++..+++++++...  ..+ .++|++++||++++.++.++++.|++.     ++++|+++.+.+..+..    
T Consensus        78 ~i~~~~~~~~~~~~~al~~~~~~~~~-~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~----  152 (217)
T cd04197          78 IVIIIMSEDCRSLGDALRDLDAKGLI-RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRT----  152 (217)
T ss_pred             eEEEEeCCCcCccchHHHHHhhcccc-CCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCcccc----
Confidence            355555566688999887653  334 478999999999999999999999884     88899888776532110    


Q ss_pred             CCCcccCCCCCcccEEEecCCCcEEEEeeccccccc--ccccchHHHhhcceeEEecCCccceEEeechHHH
Q 012817          151 SGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEK--DTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL  220 (456)
Q Consensus       151 ~~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k--~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl  220 (456)
                             +....++++.+|+++..++++.+++...+  ...++..++.+++++.+++++.++|+|+|++++|
T Consensus       153 -------~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl  217 (217)
T cd04197         153 -------RRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL  217 (217)
T ss_pred             -------ccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence                   01224678888877445667776554332  2457888899999999999999999999999875

N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase

Probab=99.97  E-value=1e-28  Score=232.35  Aligned_cols=225  Identities=19%  Similarity=0.337  Sum_probs=171.8

Q ss_pred             eEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccC--cc----
Q 012817            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVD--RL----   77 (456)
Q Consensus         4 ~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~--~~----   77 (456)
                      +|||||||.|+||+|+ |..+||||+|++|||||+|+++.+.++|+++|+|++++..  +.+.+++.+....  .+    
T Consensus         1 kavilaaG~gtRl~~~-t~~~pK~llpv~g~pii~~~l~~l~~~gi~~i~iv~~~~~--~~i~~~~~~~~~~~~~~~~~~   77 (254)
T TIGR02623         1 KAVILAGGLGTRISEE-THLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKG--YVIKEYFANYFLHMSDVTFHM   77 (254)
T ss_pred             CEEEEcCccccccCcc-ccCCCcceeEECCEEHHHHHHHHHHHCCCCEEEEEcCCCH--HHHHHHHHhhhhcccCeeEEe
Confidence            5899999999999999 9999999999999999999999999999999999998653  3455555432110  11    


Q ss_pred             ---------------ceEEEEccCCcChHHHHHHHHhcCCCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeeccc
Q 012817           78 ---------------HVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV  142 (456)
Q Consensus        78 ---------------~i~~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~  142 (456)
                                     .+.+..+.++.||+++++.+.+.+.+++|++++||.+++.++.++++.|.+.++++|+++..   
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~~e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~~---  154 (254)
T TIGR02623        78 ADNTMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLDDEAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAVQ---  154 (254)
T ss_pred             cccccccccccCCccceeeeecCCcCCcHHHHHHHHHhcCCCeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEec---
Confidence                           12233344558999999999998876789999999999999999999999999998876542   


Q ss_pred             CCCccCCCCCCcccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHH
Q 012817          143 SGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQE  222 (456)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~  222 (456)
                       +               +..||++.+|+ + .+..+.+     |+..              .+.++++|+|+|++++|. 
T Consensus       155 -~---------------~~~yG~v~~d~-~-~V~~~~E-----kp~~--------------~~~~i~~Giyi~~~~il~-  196 (254)
T TIGR02623       155 -P---------------PGRFGALDLEG-E-QVTSFQE-----KPLG--------------DGGWINGGFFVLNPSVLD-  196 (254)
T ss_pred             -C---------------CCcccEEEECC-C-eEEEEEe-----CCCC--------------CCCeEEEEEEEEcHHHHh-
Confidence             1               45689998885 4 4556653     3210              145789999999999995 


Q ss_pred             HHhcCccccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceee
Q 012817          223 VLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKC  302 (456)
Q Consensus       223 ~~~~~~~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (456)
                      .++..  ..++.+|+++.+++++                                                       ++
T Consensus       197 ~l~~~--~~~~~~d~i~~l~~~~-------------------------------------------------------~v  219 (254)
T TIGR02623       197 LIDGD--ATVWEQEPLETLAQRG-------------------------------------------------------EL  219 (254)
T ss_pred             hcccc--CchhhhhHHHHHHhCC-------------------------------------------------------CE
Confidence            44432  2356789999987642                                                       23


Q ss_pred             EEEEecCcchhhcccCHHHHHHHhHhhhc
Q 012817          303 CVYIASNSKYCVRLNSIQAFMDINRDVIG  331 (456)
Q Consensus       303 ~~yi~~~~~~~~~i~~~~~y~~~~~~~l~  331 (456)
                      .+|  ...+||.+++++++|.+++..+-.
T Consensus       220 ~~~--~~~g~w~dIgt~~~~~~~~~~~~~  246 (254)
T TIGR02623       220 SAY--EHSGFWQPMDTLRDKNYLEELWES  246 (254)
T ss_pred             EEE--eCCCEEecCCchHHHHHHHHHHHc
Confidence            345  457899999999999888876643

Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.

>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose

Probab=99.96  E-value=2.9e-28  Score=231.67  Aligned_cols=235  Identities=17%  Similarity=0.281  Sum_probs=168.9

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhc-c-------
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-V-------   74 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~-~-------   74 (456)
                      |+|||||||.|+||+|+ |..+||||+|++|||||+|+|+++.++|+++++|++++..  +.+..++.+.+ .       
T Consensus         1 mkaiIlAaG~gtRl~pl-t~~~pK~llpv~gkpli~~~l~~l~~~gi~~i~iv~~~~~--~~i~~~~~~~~~~~~~~~~~   77 (267)
T cd02541           1 RKAVIPAAGLGTRFLPA-TKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGK--RAIEDHFDRSYELEETLEKK   77 (267)
T ss_pred             CeEEEEcCCCCccCCCc-ccCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCch--HHHHHHhCCcHHHHHHHHhc
Confidence            68999999999999999 9999999999999999999999999999999999998653  34444443211 0       


Q ss_pred             -------------CccceEEEEccCCcChHHHHHHHHhcCCCCcEEEEcCCcccCC---ChhHHHHHHHhcCceEEEEEe
Q 012817           75 -------------DRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDV---PPGAVTAAHRRHDAVVTAMIC  138 (456)
Q Consensus        75 -------------~~~~i~~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~---~l~~~l~~~~~~~a~~t~~~~  138 (456)
                                   ....+.+..++...|++++++.+.+.+..+++++++||.++..   ++.++++.|++.++++ +++.
T Consensus        78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~~~~i~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~-~~~~  156 (267)
T cd02541          78 GKTDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASV-IAVE  156 (267)
T ss_pred             ccHHHhhhhhcccCCceEEEEEcCCCCChHHHHHHHHHHhCCCceEEEECCeEEeCCchHHHHHHHHHHHhCCCE-EEEE
Confidence                         0223445555667999999999999887678999999965543   4999999998877664 4444


Q ss_pred             ecccCCCccCCCCCCcccCCCCCcccEEEecCC---CcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEee
Q 012817          139 SVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPT---KQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAF  215 (456)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~d~~---~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~  215 (456)
                      ..+.+               ++..|+++.+|++   ...+..+.+++..+                ...+.++++|+|+|
T Consensus       157 ~~~~~---------------~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~----------------~~~~~~~~~Giyi~  205 (267)
T cd02541         157 EVPPE---------------DVSKYGIVKGEKIDGDVFKVKGLVEKPKPE----------------EAPSNLAIVGRYVL  205 (267)
T ss_pred             EcChh---------------cCccceEEEeecCCCCceEEeEEEECCCCC----------------CCCCceEEEEEEEc
Confidence            43321               1456899999862   22455665422110                11356789999999


Q ss_pred             chHHHHHHHhcCc--cccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCC
Q 012817          216 NRSVLQEVLDQKD--KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGS  293 (456)
Q Consensus       216 ~~~vl~~~~~~~~--~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (456)
                      ++++|..+.....  .......|+++++++.+                                                
T Consensus       206 ~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~------------------------------------------------  237 (267)
T cd02541         206 TPDIFDILENTKPGKGGEIQLTDAIAKLLEEE------------------------------------------------  237 (267)
T ss_pred             CHHHHHHHHhCCCCCCCcEEHHHHHHHHHhcC------------------------------------------------
Confidence            9999876643111  11122347777776532                                                


Q ss_pred             CCCCcceeeEEEEecCcchhhcccCHHHHHHHhHhh
Q 012817          294 APVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV  329 (456)
Q Consensus       294 ~~~~~~~~~~~yi~~~~~~~~~i~~~~~y~~~~~~~  329 (456)
                             ++.+|  ...+||.+++++++|+++++++
T Consensus       238 -------~v~~~--~~~g~w~digt~~~y~~a~~~~  264 (267)
T cd02541         238 -------PVYAY--VFEGKRYDCGNKLGYLKATVEF  264 (267)
T ss_pred             -------CEEEE--EeeeEEEeCCCHHHHHHHHHHH
Confidence                   23455  4468999999999999999986

Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.

>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase

Probab=99.96  E-value=1.2e-27  Score=223.41  Aligned_cols=233  Identities=20%  Similarity=0.321  Sum_probs=174.5

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~   82 (456)
                      |+|||||||.|+||+|+ +...||+|+|++|+|||+|+++++.++|+++++|+++..  .+.+.+++.+.......+.++
T Consensus         1 m~avIlAaG~g~Rl~pl-t~~~pK~l~~i~g~~li~~~l~~l~~~~~~~i~vv~~~~--~~~~~~~~~~~~~~~~~i~~~   77 (236)
T cd04189           1 MKGLILAGGKGTRLRPL-TYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPT--GEEIKEALGDGSRFGVRITYI   77 (236)
T ss_pred             CeEEEECCCcccccccc-ccCCCceeeEECCcchHHHHHHHHHHCCCCEEEEEcCCC--HHHHHHHhcchhhcCCeEEEE
Confidence            78999999999999999 889999999999999999999999999999999999864  345666665432122345555


Q ss_pred             EccCCcChHHHHHHHHhcCCCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCCc
Q 012817           83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGR  162 (456)
Q Consensus        83 ~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (456)
                      .+....|++++++.+...+.++++++++||.+++.++.++++.|.+.++++++++.+.+  +               +..
T Consensus        78 ~~~~~~g~~~sl~~a~~~i~~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------------~~~  140 (236)
T cd04189          78 LQEEPLGLAHAVLAARDFLGDEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVE--D---------------PRR  140 (236)
T ss_pred             ECCCCCChHHHHHHHHHhcCCCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECC--C---------------ccc
Confidence            55556899999999998886578999999999999999999999998888888776643  1               456


Q ss_pred             ccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCc--cccccccchhHH
Q 012817          163 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD--KFQSLKQDVLPY  240 (456)
Q Consensus       163 ~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~--~~~s~~~d~l~~  240 (456)
                      |+++.+|++  .+..+.+     |+.             ...+.+.++|+|+|++++|..+.....  .......|+++.
T Consensus       141 ~g~~~~d~~--~v~~~~e-----k~~-------------~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~d~~~~  200 (236)
T cd04189         141 FGVAVVDDG--RIVRLVE-----KPK-------------EPPSNLALVGVYAFTPAIFDAISRLKPSWRGELEITDAIQW  200 (236)
T ss_pred             ceEEEEcCC--eEEEEEE-----CCC-------------CCCCCEEEEEEEEeCHHHHHHHHhcCCCCCCeEEHHHHHHH
Confidence            788888743  4445442     211             112457899999999999875522111  111112577887


Q ss_pred             HhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcchhhcccCHH
Q 012817          241 LVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQ  320 (456)
Q Consensus       241 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~~~i~~~~  320 (456)
                      +++++                                                      .++.+|  +..++|.++++++
T Consensus       201 ~i~~g------------------------------------------------------~~v~~~--~~~~~~~~i~t~~  224 (236)
T cd04189         201 LIDRG------------------------------------------------------RRVGYS--IVTGWWKDTGTPE  224 (236)
T ss_pred             HHHcC------------------------------------------------------CcEEEE--EcCceEEeCCCHH
Confidence            77543                                                      223444  4467899999999


Q ss_pred             HHHHHhHhhhc
Q 012817          321 AFMDINRDVIG  331 (456)
Q Consensus       321 ~y~~~~~~~l~  331 (456)
                      +|.++++.+++
T Consensus       225 dl~~a~~~~l~  235 (236)
T cd04189         225 DLLEANRLLLD  235 (236)
T ss_pred             HHHHHHHHHHh
Confidence            99999998765

This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in

>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase

Probab=99.96  E-value=6.2e-28  Score=228.54  Aligned_cols=206  Identities=16%  Similarity=0.263  Sum_probs=147.3

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhcc--------
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV--------   74 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~--------   74 (456)
                      |+|||||||.|+||+|+ |..+||||+|++|||||+|+|+++.++|+++++|++++..  +.+.+|+.+.+.        
T Consensus         1 m~avIlAaG~gtRl~pl-t~~~pK~llpi~g~pli~~~l~~l~~~gi~~v~iv~~~~~--~~i~~~~~~~~~~~~~~~~~   77 (260)
T TIGR01099         1 RKAVIPAAGLGTRFLPA-TKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGK--RAIEDHFDTSYELEHQLEKR   77 (260)
T ss_pred             CeEEEEcccCcccCCCc-ccCCCceeEEECCEEHHHHHHHHHHhCCCCEEEEEeCCcH--HHHHHHhcccHHHHHHHHhh
Confidence            68999999999999999 9999999999999999999999999999999999998663  345555432110        


Q ss_pred             -------------CccceEEEEccCCcChHHHHHHHHhcCCCCcEEEEcCCcccCC---ChhHHHHHHHhcCceEEEEEe
Q 012817           75 -------------DRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDV---PPGAVTAAHRRHDAVVTAMIC  138 (456)
Q Consensus        75 -------------~~~~i~~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~---~l~~~l~~~~~~~a~~t~~~~  138 (456)
                                   ....+.+..+....|++++++.+.+.+.++++++++||.++..   ++.++++.|.+.++++ +++.
T Consensus        78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~~~~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~i-i~~~  156 (260)
T TIGR01099        78 GKEELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFVGDEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSI-IAVE  156 (260)
T ss_pred             hhHHHHHHhhhccccceEEEEecCCCCCHHHHHHHHHHhhCCCCEEEEeccceecCCcHHHHHHHHHHHHhCCCE-EEEE
Confidence                         0122344445567899999999998886678999999966543   7999999999888876 4444


Q ss_pred             ecccCCCccCCCCCCcccCCCCCcccEEEecC---CCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEee
Q 012817          139 SVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDP---TKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAF  215 (456)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~d~---~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~  215 (456)
                      ..+.++               +..|+++.+|.   ++..+..+.+++..+                ...++++++|+|+|
T Consensus       157 ~~~~~~---------------~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~----------------~~~~~~~~~Giyi~  205 (260)
T TIGR01099       157 EVPKEE---------------VSKYGVIDGEGVEEGLYEIKDMVEKPKPE----------------EAPSNLAIVGRYVL  205 (260)
T ss_pred             ECChhh---------------cccCceEEeccccCCceeEEEEEECCCCC----------------CCCCceEEEEEEEC
Confidence            433212               56789998873   323455665432101                11356789999999


Q ss_pred             chHHHHHHHhcCcc--ccccccchhHHHhH
Q 012817          216 NRSVLQEVLDQKDK--FQSLKQDVLPYLVR  243 (456)
Q Consensus       216 ~~~vl~~~~~~~~~--~~s~~~d~l~~l~~  243 (456)
                      ++++|..+.....+  ......|+++.+++
T Consensus       206 ~~~~~~~l~~~~~~~~~~~~l~d~i~~l~~  235 (260)
T TIGR01099       206 TPDIFDLLEETPPGAGGEIQLTDALRKLLE  235 (260)
T ss_pred             CHHHHHHHHhCCCCCCCceeHHHHHHHHHh
Confidence            99998866432211  11223477777765

Built to distinquish between the highly similar genes galU and galF

>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family

Probab=99.96  E-value=8.4e-28  Score=222.03  Aligned_cols=194  Identities=18%  Similarity=0.275  Sum_probs=146.2

Q ss_pred             eEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEE
Q 012817            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT   83 (456)
Q Consensus         4 ~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~   83 (456)
                      +|||||||.|+||+|+ |..+||+|+|++|+|||+|+|++|.++|+++|+|++++.  .+.+.+++.+ ......+.+..
T Consensus         1 kaiIlaaG~g~Rl~pl-t~~~pK~llpi~g~~li~~~l~~l~~~gi~~i~iv~~~~--~~~i~~~~~~-~~~~~~i~~~~   76 (221)
T cd06422           1 KAMILAAGLGTRMRPL-TDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHL--ADQIEAHLGD-SRFGLRITISD   76 (221)
T ss_pred             CEEEEcCCCCCccccc-cCCCCCceeeECCEEHHHHHHHHHHHCCCCEEEEEccCC--HHHHHHHHhc-ccCCceEEEec
Confidence            5899999999999999 999999999999999999999999999999999999865  3456666654 11122333433


Q ss_pred             cc-CCcChHHHHHHHHhcCCCCcEEEEcCCcccCCChhHHHHHHH--hcCceEEEEEeecccCCCccCCCCCCcccCCCC
Q 012817           84 VP-EDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHR--RHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKP  160 (456)
Q Consensus        84 ~~-~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~l~~~l~~~~--~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (456)
                      +. +..|++++++.+++.+.++++++++||++++.++.++++.|.  +.++.+++...+.+  +               +
T Consensus        77 ~~~~~~g~~~~l~~~~~~~~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------------~  139 (221)
T cd06422          77 EPDELLETGGGIKKALPLLGDEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNP--G---------------H  139 (221)
T ss_pred             CCCcccccHHHHHHHHHhcCCCCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcC--C---------------C
Confidence            33 457999999999998866789999999999999999999998  45666666554432  1               4


Q ss_pred             CcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCccccccccchhHH
Q 012817          161 GRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY  240 (456)
Q Consensus       161 ~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~~~s~~~d~l~~  240 (456)
                      ..|+++.+|+++++ ..+.     +++                ...++++|+|+|++++|..+...    ....+|+++.
T Consensus       140 ~~~g~v~~d~~~~v-~~~~-----~~~----------------~~~~~~~Giyi~~~~~l~~l~~~----~~~~~d~~~~  193 (221)
T cd06422         140 NGVGDFSLDADGRL-RRGG-----GGA----------------VAPFTFTGIQILSPELFAGIPPG----KFSLNPLWDR  193 (221)
T ss_pred             CCcceEEECCCCcE-eecc-----cCC----------------CCceEEEEEEEEcHHHHhhCCcC----cccHHHHHHH
Confidence            56788888877653 3332     221                12578999999999999765322    1223578888


Q ss_pred             HhHh
Q 012817          241 LVRS  244 (456)
Q Consensus       241 l~~~  244 (456)
                      ++++
T Consensus       194 l~~~  197 (221)
T cd06422         194 AIAA  197 (221)
T ss_pred             HHHc
Confidence            7753

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional

Probab=99.96  E-value=2.6e-27  Score=227.04  Aligned_cols=232  Identities=13%  Similarity=0.227  Sum_probs=170.1

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhcc--------
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV--------   74 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~--------   74 (456)
                      |+|||+|||.|+||+|+ |..+||+|+|++|||||+|+|+++.++|+++++|++++..  +.+.+++.+.+.        
T Consensus         9 ~~aiIlaaG~g~Rl~~~-t~~~pK~l~pv~g~pii~~~l~~l~~~gi~~i~vv~~~~~--~~i~~~~~~~~~~~~~l~~~   85 (302)
T PRK13389          9 KKAVIPVAGLGTRMLPA-TKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSK--NSIENHFDTSFELEAMLEKR   85 (302)
T ss_pred             eEEEEECCcCCccCCCc-cCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCCH--HHHHHHHccchhhhhhhhhh
Confidence            78999999999999999 9999999999999999999999999999999999998653  345555543110        


Q ss_pred             --------------CccceEEEEccCCcChHHHHHHHHhcCCCCcEEEEcCCcccC--------CChhHHHHHHHhcCce
Q 012817           75 --------------DRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD--------VPPGAVTAAHRRHDAV  132 (456)
Q Consensus        75 --------------~~~~i~~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~--------~~l~~~l~~~~~~~a~  132 (456)
                                    ....+.+..+.+..|++++++.+.+.+.+++|+++.||.+++        .++.++++.|.+.+++
T Consensus        86 ~~~~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~~~~~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~  165 (302)
T PRK13389         86 VKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHS  165 (302)
T ss_pred             hhhHHHHhhhhccccCceEEEeecCCCCChHHHHHHHHHHcCCCCEEEEeCcceecccccccccccHHHHHHHHHhcCCC
Confidence                          012244455566799999999998888667899999997653        7999999999888776


Q ss_pred             EEEEEeecccCCCccCCCCCCcccCCCCCcccEEEecCC----C--cEEEEeecccccccccccchHHHhhcceeEEecC
Q 012817          133 VTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPT----K--QFLLHIATGAELEKDTRIRKSILRAVGQMDIRAD  206 (456)
Q Consensus       133 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~d~~----~--~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~  206 (456)
                       ++++...+  +               +..||++..|..    +  ..+..+.|++..+                ...++
T Consensus       166 -tl~~~~~~--~---------------~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~----------------~~~s~  211 (302)
T PRK13389        166 -QIMVEPVA--D---------------VTAYGVVDCKGVELAPGESVPMVGVVEKPKAD----------------VAPSN  211 (302)
T ss_pred             -EEEEEEcc--c---------------CCcceEEEecCcccccCCcceEEEEEECCCCC----------------CCCcc
Confidence             56555442  2               567899988641    1  2355555422100                11356


Q ss_pred             CccceEEeechHHHHHHHhcCc---cccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCccc
Q 012817          207 LMDAHMYAFNRSVLQEVLDQKD---KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFH  283 (456)
Q Consensus       207 ~~~~giYi~~~~vl~~~~~~~~---~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (456)
                      ++++|+|+|++++|. +++...   ..+.+.+|+++++++++                                      
T Consensus       212 ~~~~GiYi~~~~il~-~l~~~~~~~~~e~~l~d~i~~l~~~~--------------------------------------  252 (302)
T PRK13389        212 LAIVGRYVLSADIWP-LLAKTPPGAGDEIQLTDAIDMLIEKE--------------------------------------  252 (302)
T ss_pred             EEEEEEEEECHHHHH-HHHhCCCCCCCeeeHHHHHHHHHHcC--------------------------------------
Confidence            799999999999985 443321   12233468888887532                                      


Q ss_pred             ccccCCCCCCCCCCcceeeEEEEecCcchhhcccCHHHHHHHhHhh
Q 012817          284 ELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV  329 (456)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~~~i~~~~~y~~~~~~~  329 (456)
                                       ++.+|  ...++|.+++++++|.+++.++
T Consensus       253 -----------------~v~~~--~~~G~w~DIGtpe~~~~a~~~~  279 (302)
T PRK13389        253 -----------------TVEAY--HMKGKSHDCGNKLGYMQAFVEY  279 (302)
T ss_pred             -----------------CEEEE--EeeeEEEeCCCHHHHHHHHHHH
Confidence                             23345  4578999999999999998875

>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose

Probab=99.95  E-value=4.5e-27  Score=221.52  Aligned_cols=225  Identities=18%  Similarity=0.314  Sum_probs=168.1

Q ss_pred             EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccC--ccce---
Q 012817            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVD--RLHV---   79 (456)
Q Consensus         5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~--~~~i---   79 (456)
                      |||||||.|+||+|+ |..+||||+|++|+|||+|+++.+..+|+++++|++++..  +.+.+++.+....  .+.+   
T Consensus         1 aiilaaG~g~Rl~pl-t~~~pK~llpv~~~p~i~~~~~~~~~~gi~~i~iv~~~~~--~~i~~~~~~~~~~~~~~~~~~~   77 (253)
T cd02524           1 VVILAGGLGTRLSEE-TELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKG--HVIKEYFLNYFLHNSDVTIDLG   77 (253)
T ss_pred             CEEEecCCccccCCc-cCCCCceEEEECCEEHHHHHHHHHHhCCCceEEEECCCCH--HHHHHHHHhhhhhcCceeEeec
Confidence            699999999999999 9999999999999999999999999999999999998653  4566666543211  1111   


Q ss_pred             ----------------EEEEccCCcChHHHHHHHHhcCCC-CcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeeccc
Q 012817           80 ----------------EVATVPEDVGTAGALRAIAHHLTA-KDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV  142 (456)
Q Consensus        80 ----------------~~~~~~~~~gt~~al~~~~~~l~~-~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~  142 (456)
                                      .++......+++++++.+.+.+.+ ++|++++||.+++.++.++++.|...++++|+++.. + 
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~-~-  155 (253)
T cd02524          78 TNRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGDDETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH-P-  155 (253)
T ss_pred             ccceeeecccccccceeecccCcccccHHHHHHHHHhcCCCCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec-C-
Confidence                            111112246789999999998865 789999999999999999999999989988876642 1 


Q ss_pred             CCCccCCCCCCcccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHH
Q 012817          143 SGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQE  222 (456)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~  222 (456)
                                       +..|+++.+|+++++ ..+.+     |+.              ..+.++++|+|+|++++|..
T Consensus       156 -----------------~~~~g~v~~d~~g~V-~~~~e-----kp~--------------~~~~~i~~Giyi~~~~l~~~  198 (253)
T cd02524         156 -----------------PGRFGELDLDDDGQV-TSFTE-----KPQ--------------GDGGWINGGFFVLEPEVFDY  198 (253)
T ss_pred             -----------------CCcccEEEECCCCCE-EEEEE-----CCC--------------CCCceEEEEEEEECHHHHHh
Confidence                             345788999987764 44432     211              01346889999999999865


Q ss_pred             HHhcCccccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceee
Q 012817          223 VLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKC  302 (456)
Q Consensus       223 ~~~~~~~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (456)
                      +...   ..++..|+++.+++++                                                       ++
T Consensus       199 l~~~---~~~~~~d~l~~li~~~-------------------------------------------------------~v  220 (253)
T cd02524         199 IDGD---DTVFEREPLERLAKDG-------------------------------------------------------EL  220 (253)
T ss_pred             hccc---cchhhHHHHHHHHhcC-------------------------------------------------------CE
Confidence            5322   2344568888887642                                                       22


Q ss_pred             EEEEecCcchhhcccCHHHHHHHhHhhhc
Q 012817          303 CVYIASNSKYCVRLNSIQAFMDINRDVIG  331 (456)
Q Consensus       303 ~~yi~~~~~~~~~i~~~~~y~~~~~~~l~  331 (456)
                      .+|  ...+||.+++++.+|.++...+..
T Consensus       221 ~~~--~~~g~w~~I~t~~~~~~~~~~~~~  247 (253)
T cd02524         221 MAY--KHTGFWQCMDTLRDKQTLEELWNS  247 (253)
T ss_pred             EEE--ecCCEEEeCcCHHHHHHHHHHHHc
Confidence            344  456799999999999988866543

Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.

>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity

Probab=99.95  E-value=4.5e-27  Score=215.88  Aligned_cols=206  Identities=33%  Similarity=0.506  Sum_probs=154.0

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhcc----Cccc
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV----DRLH   78 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~----~~~~   78 (456)
                      |+|||||||.|+||+|+ |...||+|+|++|+|||+|+++++.++|+++++|++++...  .+..++.+...    ....
T Consensus         1 ~~avIlagg~g~rl~pl-t~~~pK~llpv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~--~~~~~~~~~~~~~~~~~~~   77 (216)
T cd02507           1 FQAVVLADGFGSRFLPL-TSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQ--AIIEHLLKSKWSSLSSKMI   77 (216)
T ss_pred             CeEEEEeCCCccccCcc-ccCCCcccceECCEEHHHHHHHHHHHCCCCeEEEEeCCcHH--HHHHHHHhcccccccCCce
Confidence            68999999999999999 89999999999999999999999999999999999986643  34444433211    1112


Q ss_pred             eEEEE--ccCCcChHHHHHHHHhcCCCCcEEEEcCCcccCCChhHHHHH--HHhcCceEEEEEeecccCCCccCCCCCCc
Q 012817           79 VEVAT--VPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAA--HRRHDAVVTAMICSVPVSGLSEAGSSGAK  154 (456)
Q Consensus        79 i~~~~--~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~l~~~l~~--~~~~~a~~t~~~~~~~~~~~~~~~~~~~~  154 (456)
                      +.+..  +.+..|++++++.+.+.+ .++|++++||++++.++.+++++  +...++++++.+...+......       
T Consensus        78 v~~~~~~~~~~~Gta~~l~~~~~~i-~~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~-------  149 (216)
T cd02507          78 VDVITSDLCESAGDALRLRDIRGLI-RSDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTE-------  149 (216)
T ss_pred             EEEEEccCCCCCccHHHHHHHhhcC-CCCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCcc-------
Confidence            33332  334689999999998888 57899999999999999999965  4445566665555544322110       


Q ss_pred             ccCCCCCcccEEEecCCC--cEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHH
Q 012817          155 DKTKKPGRYNIIGMDPTK--QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL  220 (456)
Q Consensus       155 ~~~~~~~~~~iv~~d~~~--~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl  220 (456)
                       ..+....++++.+|+++  .+++++.+..+..+...++..+++++|++.+++++.|+|+|+|++++|
T Consensus       150 -~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl  216 (216)
T cd02507         150 -QSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL  216 (216)
T ss_pred             -ccccCCCCcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence             00124567899999987  445566554433333445899999999999999999999999999874

N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family

Probab=99.95  E-value=1.6e-26  Score=213.30  Aligned_cols=194  Identities=22%  Similarity=0.418  Sum_probs=145.0

Q ss_pred             EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEEc
Q 012817            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV   84 (456)
Q Consensus         5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~   84 (456)
                      |||||||.|+||+|+ +.+.||+|+|++|+|||+|+|++|.++|+++++|++++.  .+.+.+++.+.......+.+..+
T Consensus         1 ~vIlaaG~g~R~~pl-t~~~pK~ll~~~g~pli~~~l~~l~~~~~~~iivv~~~~--~~~i~~~~~~~~~~~~~i~~~~~   77 (220)
T cd06426           1 VVIMAGGKGTRLRPL-TENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYL--AEMIEDYFGDGSKFGVNISYVRE   77 (220)
T ss_pred             CEEecCCCccccCcc-cCCCCCccCeECCcchHHHHHHHHHHCCCcEEEEECccC--HHHHHHHHCCccccCccEEEEEC
Confidence            689999999999999 999999999999999999999999999999999999865  33566665442111233444444


Q ss_pred             cCCcChHHHHHHHHhcCCCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCCccc
Q 012817           85 PEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYN  164 (456)
Q Consensus        85 ~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (456)
                      +.+.|+++++..+.+.. ++++++++||++++.++..+++.|+..++++++++.....                 +..|+
T Consensus        78 ~~~~g~~~~l~~~~~~~-~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------------~~~~g  139 (220)
T cd06426          78 DKPLGTAGALSLLPEKP-TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEV-----------------QVPYG  139 (220)
T ss_pred             CCCCcchHHHHHHHhhC-CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCC-----------------CCcce
Confidence            45689999998776655 5789999999999999999999999888888887765321                 34588


Q ss_pred             EEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCccccccccchhHHHhHh
Q 012817          165 IIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRS  244 (456)
Q Consensus       165 iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~~~s~~~d~l~~l~~~  244 (456)
                      ++..|+ ++ +..+.+     |+.               .+.++++|+|+|+++++..+ .+.. ..+ ..|+++.++++
T Consensus       140 ~~~~d~-~~-v~~~~e-----k~~---------------~~~~~~~Giy~~~~~~~~~i-~~~~-~~~-l~~~~~~~i~~  194 (220)
T cd06426         140 VVETEG-GR-ITSIEE-----KPT---------------HSFLVNAGIYVLEPEVLDLI-PKNE-FFD-MPDLIEKLIKE  194 (220)
T ss_pred             EEEECC-CE-EEEEEE-----CCC---------------CCCeEEEEEEEEcHHHHhhc-CCCC-CcC-HHHHHHHHHHC
Confidence            888885 44 445542     211               13567899999999998754 3222 122 35778777654

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars

Probab=99.95  E-value=1.3e-26  Score=213.41  Aligned_cols=200  Identities=29%  Similarity=0.494  Sum_probs=153.7

Q ss_pred             EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEEc
Q 012817            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV   84 (456)
Q Consensus         5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~   84 (456)
                      |||||||.|+||+|+ |..+||+|+|++|+|||+|+++++.++|+++++|++++.  .+.+.+++.+.......+.+..+
T Consensus         1 aiIlaaG~g~R~~~~-t~~~pK~ll~v~g~pli~~~l~~l~~~g~~~i~vv~~~~--~~~i~~~~~~~~~~~~~i~~~~~   77 (217)
T cd04181           1 AVILAAGKGTRLRPL-TDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYL--GEQIEEYFGDGSKFGVNIEYVVQ   77 (217)
T ss_pred             CEEecCCcccccccc-ccCCCccccEECCeeHHHHHHHHHHHCCCCEEEEEeccC--HHHHHHHHcChhhcCceEEEEeC
Confidence            689999999999999 899999999999999999999999999999999999864  33566665442211233555555


Q ss_pred             cCCcChHHHHHHHHhcCCCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCCccc
Q 012817           85 PEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYN  164 (456)
Q Consensus        85 ~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (456)
                      +...|++++++.+++.+.++++++++||++++.++.++++.|.+.++++++++.+.+  +               +..|+
T Consensus        78 ~~~~g~~~al~~~~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------------~~~~~  140 (217)
T cd04181          78 EEPLGTAGAVRNAEDFLGDDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE--D---------------PSRYG  140 (217)
T ss_pred             CCCCccHHHHHHhhhhcCCCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC--C---------------CCcce
Confidence            556899999999998886678999999999999999999999999999888887643  1               55688


Q ss_pred             EEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCc-cccccccchhHHHhH
Q 012817          165 IIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD-KFQSLKQDVLPYLVR  243 (456)
Q Consensus       165 iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~-~~~s~~~d~l~~l~~  243 (456)
                      ++.+|++++ +..+.+     |+.             ...+.++++|+|+|++++|+. +++.. ...++..|+++.+++
T Consensus       141 ~v~~d~~~~-v~~~~e-----k~~-------------~~~~~~~~~Giy~~~~~~~~~-l~~~~~~~~~~~~~~~~~l~~  200 (217)
T cd04181         141 VVELDDDGR-VTRFVE-----KPT-------------LPESNLANAGIYIFEPEILDY-IPEILPRGEDELTDAIPLLIE  200 (217)
T ss_pred             EEEEcCCCc-EEEEEE-----CCC-------------CCCCCEEEEEEEEECHHHHHh-hhhcCCcccccHHHHHHHHHh
Confidence            999988765 445543     211             001467899999999999854 44321 224556688888775


Q ss_pred             h
Q 012817          244 S  244 (456)
Q Consensus       244 ~  244 (456)
                      +
T Consensus       201 ~  201 (217)
T cd04181         201 E  201 (217)
T ss_pred             c
Confidence            3

Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.

>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases

Probab=99.95  E-value=2.1e-26  Score=212.85  Aligned_cols=198  Identities=30%  Similarity=0.477  Sum_probs=149.2

Q ss_pred             EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEEc
Q 012817            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV   84 (456)
Q Consensus         5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~   84 (456)
                      |||||||.|+||+|+ +...||+|+|++|+|||+|+++++.++|+++++|++++..  +.+.+++.+.......+.+...
T Consensus         1 aiIlaaG~g~R~~~~-t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~v~vv~~~~~--~~i~~~~~~~~~~~~~~~~~~~   77 (223)
T cd06915           1 AVILAGGLGTRLRSV-VKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLA--EQIEEYFGDGYRGGIRIYYVIE   77 (223)
T ss_pred             CEEecCCcccccCcc-cCCCCccccEECCcchHHHHHHHHHHCCCCEEEEEcccCH--HHHHHHHcCccccCceEEEEEC
Confidence            699999999999999 8999999999999999999999999999999999997542  3555555432111122334444


Q ss_pred             cCCcChHHHHHHHHhcCCCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCCccc
Q 012817           85 PEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYN  164 (456)
Q Consensus        85 ~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (456)
                      ....|++++++.+++.+.++++++++||++++.++.++++.|++.++++++++.+.+.                 +..|+
T Consensus        78 ~~~~G~~~~l~~a~~~~~~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------------~~~~~  140 (223)
T cd06915          78 PEPLGTGGAIKNALPKLPEDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD-----------------ASRYG  140 (223)
T ss_pred             CCCCcchHHHHHHHhhcCCCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCC-----------------CCcce
Confidence            5568999999999998866889999999988899999999998888888877766431                 34578


Q ss_pred             EEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCccccccccchhHHHhHh
Q 012817          165 IIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRS  244 (456)
Q Consensus       165 iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~~~s~~~d~l~~l~~~  244 (456)
                      .+.+|++++ +..+.+     |+.             ...+.++++|+|+|++++|..+...   ..++.+|+++++++.
T Consensus       141 ~v~~d~~~~-v~~~~e-----k~~-------------~~~~~~~~~Giy~~~~~~l~~~~~~---~~~~~~~~~~~l~~~  198 (223)
T cd06915         141 NVTVDGDGR-VIAFVE-----KGP-------------GAAPGLINGGVYLLRKEILAEIPAD---AFSLEADVLPALVKR  198 (223)
T ss_pred             eEEECCCCe-EEEEEe-----CCC-------------CCCCCcEEEEEEEECHHHHhhCCcc---CCChHHHHHHHHHhc
Confidence            888887765 445542     211             0135678999999999999755322   234556888877653

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.

>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule

Probab=99.92  E-value=6.7e-24  Score=197.34  Aligned_cols=197  Identities=17%  Similarity=0.253  Sum_probs=139.9

Q ss_pred             EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhh-HHHHhhhhhhccCccceEEEE
Q 012817            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAA-LRVGGWISAAYVDRLHVEVAT   83 (456)
Q Consensus         5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~-~~i~~~~~~~~~~~~~i~~~~   83 (456)
                      +||||||.|+||+|+ |...||||+|++|+|||+|+|+.+.++|+++++++++..... +++..++...   ..++.+..
T Consensus         1 ~iIlAaG~g~Rl~pl-t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~ivvv~~~~~~~~~~~~~~~~~~---~~~~~i~~   76 (231)
T cd04183           1 IIIPMAGLGSRFKKA-GYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRDEHNTKFHLDESLKLL---APNATVVE   76 (231)
T ss_pred             CEEECCcCCcccccc-CCCCCceeeEECCEEHHHHHHHhhhccCCceEEEEEChHHhhhhhHHHHHHHh---CCCCEEEE
Confidence            489999999999999 899999999999999999999999999999999998633211 2333333221   11233333


Q ss_pred             -ccCCcChHHHHHHHHhcCC-CCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCC
Q 012817           84 -VPEDVGTAGALRAIAHHLT-AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPG  161 (456)
Q Consensus        84 -~~~~~gt~~al~~~~~~l~-~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (456)
                       +....|++++++.++..+. +++|++++||.+++.++.+++++|.+.+++.++++....                  ..
T Consensus        77 ~~~~~~g~~~~l~~a~~~l~~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~------------------~~  138 (231)
T cd04183          77 LDGETLGAACTVLLAADLIDNDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSS------------------HP  138 (231)
T ss_pred             eCCCCCcHHHHHHHHHhhcCCCCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCC------------------CC
Confidence             3456899999999998885 477999999999999999999988877777766655431                  33


Q ss_pred             cccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechH-HHHHHHhc----Cc-cc-cccc
Q 012817          162 RYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRS-VLQEVLDQ----KD-KF-QSLK  234 (456)
Q Consensus       162 ~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~-vl~~~~~~----~~-~~-~s~~  234 (456)
                      .|+++.+|+++++ ..+.+     |+.               .+.++++|+|+|+++ +|...++.    .. .. ....
T Consensus       139 ~~~~v~~d~~~~v-~~~~e-----k~~---------------~~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~  197 (231)
T cd04183         139 RWSYVKLDENGRV-IETAE-----KEP---------------ISDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYI  197 (231)
T ss_pred             CeEEEEECCCCCE-EEeEE-----cCC---------------CCCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEE
Confidence            5888889887764 33432     211               245789999999987 55444331    10 11 1123


Q ss_pred             cchhHHHhHh
Q 012817          235 QDVLPYLVRS  244 (456)
Q Consensus       235 ~d~l~~l~~~  244 (456)
                      .|+++.++++
T Consensus       198 ~d~i~~~~~~  207 (231)
T cd04183         198 SPLYNELILD  207 (231)
T ss_pred             hHHHHHHHHc
Confidence            5777777654

GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=99.92  E-value=2.7e-23  Score=187.10  Aligned_cols=209  Identities=15%  Similarity=0.247  Sum_probs=152.8

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhh--HHH------Hhhhhhh--
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAA--LRV------GGWISAA--   72 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~--~~i------~~~~~~~--   72 (456)
                      .+|||+|||.|+||-|. |...||-|||+.+||+|+|+++.+..+|+++++++++...++  +|+      ...+...  
T Consensus         5 rKAViPaAGlGTRfLPA-TKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~~~K   83 (291)
T COG1210           5 RKAVIPAAGLGTRFLPA-TKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEKRGK   83 (291)
T ss_pred             cEEEEEccCcccccccc-cccCchhhccccCchhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHHhCH
Confidence            68999999999999999 999999999999999999999999999999999999754332  121      1111110  


Q ss_pred             -------c--cCccceEEEEccCCcChHHHHHHHHhcCCCCcEEEEcCCcccCC---ChhHHHHHHHhcCceEEEEEeec
Q 012817           73 -------Y--VDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDV---PPGAVTAAHRRHDAVVTAMICSV  140 (456)
Q Consensus        73 -------~--~~~~~i~~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~---~l~~~l~~~~~~~a~~t~~~~~~  140 (456)
                             .  .....+.++.|.+++|.++|+++|.+.+.+++|.|+.+|.+...   .+..|++.+.+.+..+ +.+.++
T Consensus        84 ~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~vg~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~sv-i~v~ev  162 (291)
T COG1210          84 RELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFVGDEPFAVLLPDDLVDSEKPCLKQMIELYEETGGSV-IGVEEV  162 (291)
T ss_pred             HHHHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhcCCCceEEEeCCeeecCCchHHHHHHHHHHHhCCcE-EEEEEC
Confidence                   0  12234667778889999999999999999999999999965543   4888999999888865 445566


Q ss_pred             ccCCCccCCCCCCcccCCCCCcccEEE----ecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeec
Q 012817          141 PVSGLSEAGSSGAKDKTKKPGRYNIIG----MDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFN  216 (456)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~iv~----~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~  216 (456)
                      +.++               .++||++.    .+.+-..+..++|++.                .-+.+|+++..|-|+++
T Consensus       163 ~~e~---------------v~kYGvi~~g~~~~~~~~~v~~~VEKP~----------------~~~APSnlai~GRYil~  211 (291)
T COG1210         163 PPED---------------VSKYGVIDPGEPVEKGVYKVKGMVEKPK----------------PEEAPSNLAIVGRYVLT  211 (291)
T ss_pred             CHHH---------------CcccceEecCccccCCeEEEEEEEECCC----------------CCCCCcceeeeeeeecC
Confidence            5433               56799987    2222123444443221                12447999999999999


Q ss_pred             hHHHHHHHhcCc--cccccccchhHHHhHh
Q 012817          217 RSVLQEVLDQKD--KFQSLKQDVLPYLVRS  244 (456)
Q Consensus       217 ~~vl~~~~~~~~--~~~s~~~d~l~~l~~~  244 (456)
                      +++|..+-....  ..+-+.+|.+..|++.
T Consensus       212 p~IFd~L~~~~~G~ggEiQLTDai~~L~~~  241 (291)
T COG1210         212 PEIFDILEETKPGAGGEIQLTDAIKKLLKK  241 (291)
T ss_pred             HHHHHHHhhCCCCCCCEeeHHHHHHHHHhh
Confidence            999975533211  2334457888888764

>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch

Probab=99.91  E-value=4.5e-24  Score=193.86  Aligned_cols=168  Identities=21%  Similarity=0.334  Sum_probs=129.8

Q ss_pred             EEEEecCCCCCCcCCCCCCCcccccccCCc-chHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCc-----cc
Q 012817            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDR-----LH   78 (456)
Q Consensus         5 aiIlagG~g~rl~pl~~~~~pK~llpi~gk-pli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~-----~~   78 (456)
                      |||||||.|+||+|+ |.+.||+|+|++|+ |||+|+++++.++|+++++|++++.  .+.+.+++.+.....     ..
T Consensus         1 avILAaG~gtRl~pl-t~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~--~~~i~~~~~~~~~~~~~~~~~~   77 (200)
T cd02508           1 AIILAGGEGTRLSPL-TKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYK--SRSLNDHLGSGKEWDLDRKNGG   77 (200)
T ss_pred             CEEeCCCCCcccchh-hcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCC--hHHHHHHHhCCCcccCCCCCCC
Confidence            689999999999999 88999999999998 9999999999999999999999866  345666664321111     11


Q ss_pred             eEEEE------ccCCcChHHHHHHHHhcCC---CCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCC
Q 012817           79 VEVAT------VPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAG  149 (456)
Q Consensus        79 i~~~~------~~~~~gt~~al~~~~~~l~---~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~  149 (456)
                      +.+..      ++.+.||+++++.+.+.+.   +++|++++||.+++.++.++++.|+++++++|+++.           
T Consensus        78 ~~~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~-----------  146 (200)
T cd02508          78 LFILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK-----------  146 (200)
T ss_pred             EEEeCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh-----------
Confidence            33332      1345899999999988774   367999999999999999999999888777665320           


Q ss_pred             CCCCcccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcC--
Q 012817          150 SSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK--  227 (456)
Q Consensus       150 ~~~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~--  227 (456)
                                                                                +++|+|+|++++|..+++..  
T Consensus       147 ----------------------------------------------------------~~~g~yi~~~~~~~~~l~~~~~  168 (200)
T cd02508         147 ----------------------------------------------------------ASMGIYIFSKDLLIELLEEDAA  168 (200)
T ss_pred             ----------------------------------------------------------hcCEEEEEEHHHHHHHHHHHhc
Confidence                                                                      36699999999987665431  


Q ss_pred             ccccccccchhHHHhHh
Q 012817          228 DKFQSLKQDVLPYLVRS  244 (456)
Q Consensus       228 ~~~~s~~~d~l~~l~~~  244 (456)
                      ....++.+|+++.++++
T Consensus       169 ~~~~~~~~d~i~~l~~~  185 (200)
T cd02508         169 DGSHDFGKDIIPAMLKK  185 (200)
T ss_pred             cCcchhHHHHHHHHhcc
Confidence            12345667899888753

ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.

>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose

Probab=99.91  E-value=1.6e-23  Score=198.79  Aligned_cols=193  Identities=21%  Similarity=0.223  Sum_probs=137.8

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCC-cchHHHHHHHHHHC-CCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVAN-RPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~g-kpli~~~l~~l~~~-gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |++||||||.|+||||+|....||+|+|++| +|||+|+++++... ++++++|+++... .+.+++++.+.   ...+.
T Consensus         1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~-~~~v~~~l~~~---~~~~~   76 (274)
T cd02509           1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEY-RFLVREQLPEG---LPEEN   76 (274)
T ss_pred             CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHH-HHHHHHHHhhc---CCCce
Confidence            6899999999999999944589999999999 99999999999998 4999999998543 23555555441   12356


Q ss_pred             EEEccCCcChHHHHHHHHhcCC----CCcEEEEcCCcccC--CChhHHHHHHHh---cCceEEEEEeecccCCCccCCCC
Q 012817           81 VATVPEDVGTAGALRAIAHHLT----AKDVLVVSGDLVSD--VPPGAVTAAHRR---HDAVVTAMICSVPVSGLSEAGSS  151 (456)
Q Consensus        81 ~~~~~~~~gt~~al~~~~~~l~----~~~~lv~~~D~i~~--~~l~~~l~~~~~---~~a~~t~~~~~~~~~~~~~~~~~  151 (456)
                      ++.++..+||++++..+...+.    ++.++|++||++..  .++.++++.+.+   .++.+|+.+.+...         
T Consensus        77 ii~ep~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~---------  147 (274)
T cd02509          77 IILEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRP---------  147 (274)
T ss_pred             EEECCCCCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCC---------
Confidence            7767778999999988866553    35689999997765  457677765543   56677776654321         


Q ss_pred             CCcccCCCCCcccEEEecCCC----cEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhc
Q 012817          152 GAKDKTKKPGRYNIIGMDPTK----QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ  226 (456)
Q Consensus       152 ~~~~~~~~~~~~~iv~~d~~~----~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~  226 (456)
                              .+.||++..+++.    ..+..+.|+++.+    ..+.++.      ....++|+|+|+|++++|...+++
T Consensus       148 --------~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~----~a~~~~~------~g~~~wNsGiyi~~~~~l~~~l~~  208 (274)
T cd02509         148 --------ETGYGYIEAGEKLGGGVYRVKRFVEKPDLE----TAKEYLE------SGNYLWNSGIFLFRAKTFLEELKK  208 (274)
T ss_pred             --------CCCeEEEEeCCcCCCCceEEeEEEECcChH----HHHHHhh------cCCeEEECceeeeeHHHHHHHHHH
Confidence                    4579999998653    1456666543221    1112211      123478999999999988777643

GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.

>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline

Probab=99.91  E-value=6.4e-23  Score=190.46  Aligned_cols=194  Identities=19%  Similarity=0.259  Sum_probs=134.9

Q ss_pred             EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEEc
Q 012817            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV   84 (456)
Q Consensus         5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~   84 (456)
                      |||||||.|+||+|+ |..+||+|+|++|+|||+|+++++.++|+++++|++++.  .+.+.+++.+.    .++.++..
T Consensus         1 aiIlAaG~g~Rl~~l-t~~~pK~l~~~~g~~li~~~l~~l~~~gi~~i~vv~~~~--~~~~~~~~~~~----~~~~~~~~   73 (229)
T cd02523           1 AIILAAGRGSRLRPL-TEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYK--KEQIEELLKKY----PNIKFVYN   73 (229)
T ss_pred             CEEEeccCccccchh-hCCCCceeeeECCEEHHHHHHHHHHHCCCceEEEEeccC--HHHHHHHHhcc----CCeEEEeC
Confidence            689999999999999 899999999999999999999999999999999999865  34566655432    23556654


Q ss_pred             cC--CcChHHHHHHHHhcCCCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCCc
Q 012817           85 PE--DVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGR  162 (456)
Q Consensus        85 ~~--~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (456)
                      +.  ..|++++++.+.+++ ++++++++||++++.   ++++.|.+.++++++++.+.....               ...
T Consensus        74 ~~~~~~g~~~s~~~~~~~~-~~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~  134 (229)
T cd02523          74 PDYAETNNIYSLYLARDFL-DEDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEW---------------EDE  134 (229)
T ss_pred             cchhhhCcHHHHHHHHHHc-CCCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccc---------------ccc
Confidence            44  479999999999888 578999999988754   577778888888888776522111               223


Q ss_pred             ccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCc------cccccccc
Q 012817          163 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD------KFQSLKQD  236 (456)
Q Consensus       163 ~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~------~~~s~~~d  236 (456)
                      +++...|. ++ +..+.+     ++..            .....+.++|+|+|+++++..+.+...      ....+.+|
T Consensus       135 ~~~~~~~~-~~-v~~~~~-----k~~~------------~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d  195 (229)
T cd02523         135 YVKDLDDA-GV-LLGIIS-----KAKN------------LEEIQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYED  195 (229)
T ss_pred             ceeeecCc-cc-eEeecc-----cCCC------------cchhceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHH
Confidence            33332232 32 333322     2100            012356899999999999876543211      12233456


Q ss_pred             hhHHHhH
Q 012817          237 VLPYLVR  243 (456)
Q Consensus       237 ~l~~l~~  243 (456)
                      +++.+++
T Consensus       196 ~i~~l~~  202 (229)
T cd02523         196 ALQRLIS  202 (229)
T ss_pred             HHHHHHh
Confidence            7776654

This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=99.87  E-value=8.3e-21  Score=192.83  Aligned_cols=193  Identities=19%  Similarity=0.187  Sum_probs=131.0

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCC-cchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccc-eE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVAN-RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLH-VE   80 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~g-kpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~-i~   80 (456)
                      |.+||||||.|+||||+|....||+|+|+.| +|||+|++++|...++++++|+++... ...+.+++.+.   ..+ .+
T Consensus         1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~~-~~~~~~~l~~~---~~~~~~   76 (468)
T TIGR01479         1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEEH-RFIVAEQLREI---GKLASN   76 (468)
T ss_pred             CEEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHHH-HHHHHHHHHHc---CCCcce
Confidence            6799999999999999944458999999977 899999999999989999999887432 22344444332   112 34


Q ss_pred             EEEccCCcChHHHHHHHHhcC----CCC-cEEEEcCCcccC--CChhHHHHHH---HhcCceEEEEEeecccCCCccCCC
Q 012817           81 VATVPEDVGTAGALRAIAHHL----TAK-DVLVVSGDLVSD--VPPGAVTAAH---RRHDAVVTAMICSVPVSGLSEAGS  150 (456)
Q Consensus        81 ~~~~~~~~gt~~al~~~~~~l----~~~-~~lv~~~D~i~~--~~l~~~l~~~---~~~~a~~t~~~~~~~~~~~~~~~~  150 (456)
                      ++.++..+||++++..+...+    ..+ .++|++||++..  ..|.++++++   .+.++.+|+...+..         
T Consensus        77 ~i~Ep~~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~---------  147 (468)
T TIGR01479        77 IILEPVGRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTH---------  147 (468)
T ss_pred             EEecccccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCCC---------
Confidence            666777899999887664443    334 489999996543  3488888765   334555555544321         


Q ss_pred             CCCcccCCCCCcccEEEecCC----C-cEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHh
Q 012817          151 SGAKDKTKKPGRYNIIGMDPT----K-QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (456)
Q Consensus       151 ~~~~~~~~~~~~~~iv~~d~~----~-~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~  225 (456)
                              ....||++..++.    + ..+..+.|+++.    ...+.++.      ..+.++|+|||+|+.+.|...+.
T Consensus       148 --------p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~----~~a~~~l~------~g~~~wNsGif~~~~~~ll~~l~  209 (468)
T TIGR01479       148 --------PETGYGYIRRGEPLAGEDVYQVQRFVEKPDL----ATAQAYLE------SGDYYWNSGMFLFRASRYLAELK  209 (468)
T ss_pred             --------CCCCceEEEeCCccCCCCceEEeEEEECCCh----HHHHHHHh------cCCeEEEeeEEEEEHHHHHHHHH
Confidence                    1467999998842    1 345666653322    11222221      12358999999999998876664


Q ss_pred             c
Q 012817          226 Q  226 (456)
Q Consensus       226 ~  226 (456)
                      +
T Consensus       210 ~  210 (468)
T TIGR01479       210 K  210 (468)
T ss_pred             H
Confidence            3

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU

Probab=99.87  E-value=1.7e-20  Score=174.22  Aligned_cols=198  Identities=27%  Similarity=0.377  Sum_probs=141.3

Q ss_pred             EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEEc
Q 012817            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV   84 (456)
Q Consensus         5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~   84 (456)
                      |||||||.|+||++    ..||+|+|++|||||+|+++++.++++++++|+++..  .+.+.+++.+     .++.++..
T Consensus         1 aiIlaaG~g~R~~~----~~pK~l~~v~gkpli~~~i~~l~~~~i~~i~iv~~~~--~~~i~~~~~~-----~~~~~~~~   69 (229)
T cd02540           1 AVILAAGKGTRMKS----DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHG--AEQVKKALAN-----PNVEFVLQ   69 (229)
T ss_pred             CEEEeCCCCccCCC----CCChhcceeCCccHHHHHHHHHHhCCCCeEEEEECCC--HHHHHHHhCC-----CCcEEEEC
Confidence            69999999999953    5899999999999999999999999999999999755  2355555533     23556666


Q ss_pred             cCCcChHHHHHHHHhcCC--CCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCC
Q 012817           85 PEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKP  160 (456)
Q Consensus        85 ~~~~gt~~al~~~~~~l~--~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (456)
                      +...|++++++.++..+.  .+.++++.||.  +...++.++++.|.+.++++++.+.+..  +               +
T Consensus        70 ~~~~g~~~ai~~a~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~--~---------------p  132 (229)
T cd02540          70 EEQLGTGHAVKQALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELE--D---------------P  132 (229)
T ss_pred             CCCCCCHHHHHHHHHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcC--C---------------C
Confidence            666899999999998875  46799999995  5567899999999887777776665432  2               4


Q ss_pred             CcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCc----cccccccc
Q 012817          161 GRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD----KFQSLKQD  236 (456)
Q Consensus       161 ~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~----~~~s~~~d  236 (456)
                      ..|+.+..|+++++ ..+.++.    ... +.+         ....++++|+|+|+++.|.++++...    ....+..|
T Consensus       133 ~~~~~~~~~~~~~v-~~~~ek~----~~~-~~~---------~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d  197 (229)
T cd02540         133 TGYGRIIRDGNGKV-LRIVEEK----DAT-EEE---------KAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTD  197 (229)
T ss_pred             CCccEEEEcCCCCE-EEEEECC----CCC-hHH---------HhhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHH
Confidence            56787777776654 3443211    110 000         01356899999999887766554321    11223467


Q ss_pred             hhHHHhHhc
Q 012817          237 VLPYLVRSQ  245 (456)
Q Consensus       237 ~l~~l~~~~  245 (456)
                      +++.+++.+
T Consensus       198 ~~~~~~~~g  206 (229)
T cd02540         198 IIALAVADG  206 (229)
T ss_pred             HHHHHHHCC
Confidence            787777643

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.

>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]

Probab=99.83  E-value=2.2e-19  Score=165.71  Aligned_cols=194  Identities=22%  Similarity=0.241  Sum_probs=131.2

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCC-cchHHHHHHHHHH-CCCCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVAN-RPVLSYVLEQLEL-SNIKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~g-kpli~~~l~~l~~-~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i   79 (456)
                      +|..||||||.|+||||||....||||+++.| +.|++.+++++.. .+..+++++|++.. ...+++.+.+........
T Consensus         1 ~~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~-~f~v~eql~e~~~~~~~~   79 (333)
T COG0836           1 MMIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKY-RFIVKEQLPEIDIENAAG   79 (333)
T ss_pred             CceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHH-HHHHHHHHhhhhhccccc
Confidence            47899999999999999999999999999955 8999999999987 66899999998543 334555554422222222


Q ss_pred             EEEEccCCcChHHHHHHHHhcCC----CCcEEEEcCCcccCC--ChhHHHHHHHh---cCceEEEEEeecccCCCccCCC
Q 012817           80 EVATVPEDVGTAGALRAIAHHLT----AKDVLVVSGDLVSDV--PPGAVTAAHRR---HDAVVTAMICSVPVSGLSEAGS  150 (456)
Q Consensus        80 ~~~~~~~~~gt~~al~~~~~~l~----~~~~lv~~~D~i~~~--~l~~~l~~~~~---~~a~~t~~~~~~~~~~~~~~~~  150 (456)
                       +..++..+.|+.++..+.-.+.    +.-++|++.|++...  .+.+.++...+   .+..+|....+   +.|     
T Consensus        80 -illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~P---t~P-----  150 (333)
T COG0836          80 -IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPP---TRP-----  150 (333)
T ss_pred             -eEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCC---CCC-----
Confidence             6777888999998876643322    224899999976654  25555554332   34444443332   222     


Q ss_pred             CCCcccCCCCCcccEEEecC-----CCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHH
Q 012817          151 SGAKDKTKKPGRYNIIGMDP-----TKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL  224 (456)
Q Consensus       151 ~~~~~~~~~~~~~~iv~~d~-----~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~  224 (456)
                               .+.||++...+     ....+..++|+++    ....+.++++      -..+||+|+|+|+.+++.+-+
T Consensus       151 ---------eTGYGYIe~G~~~~~~~~~~V~~FvEKPd----~etA~~yv~s------G~y~WNSGmF~Fra~~~l~e~  210 (333)
T COG0836         151 ---------ETGYGYIETGESIAENGVYKVDRFVEKPD----LETAKKYVES------GEYLWNSGMFLFRASVFLEEL  210 (333)
T ss_pred             ---------ccCcceeecCcccccCCceEeeeeeeCCC----HHHHHHHHHc------CceEeeccceEEEHHHHHHHH
Confidence                     46899998754     2445556665433    2333444432      236899999999998875544

>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide

Probab=99.83  E-value=5.7e-19  Score=165.02  Aligned_cols=182  Identities=20%  Similarity=0.254  Sum_probs=120.9

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHC-CCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~-gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      ++.+||||+|.|+||       .||+|+|++|||||+|+++.+.++ ++++++|++++    +.+.+++.+.     ++.
T Consensus         1 ~~~~iIlA~g~s~R~-------~~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~----~~i~~~~~~~-----~~~   64 (239)
T cd02517           1 KVIVVIPARYASSRL-------PGKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD----ERIADAVESF-----GGK   64 (239)
T ss_pred             CEEEEEecCCCCCCC-------CCCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc----HHHHHHHHHc-----CCE
Confidence            367999999999999       279999999999999999999998 89999998864    2455555432     234


Q ss_pred             EEEcc--CCcChHHHHHHHHhcCCC--CcEEEEcCC--cccCCChhHHHHHHHhc-CceEEEEEeecccCCCccCCCCCC
Q 012817           81 VATVP--EDVGTAGALRAIAHHLTA--KDVLVVSGD--LVSDVPPGAVTAAHRRH-DAVVTAMICSVPVSGLSEAGSSGA  153 (456)
Q Consensus        81 ~~~~~--~~~gt~~al~~~~~~l~~--~~~lv~~~D--~i~~~~l~~~l~~~~~~-~a~~t~~~~~~~~~~~~~~~~~~~  153 (456)
                      ++...  ...|+++ +..+.+.+..  +.++++.||  ++...+++.+++.|... ++++++++.+.+.  +...     
T Consensus        65 ~~~~~~~~~~gt~~-~~~~~~~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~--~~~~-----  136 (239)
T cd02517          65 VVMTSPDHPSGTDR-IAEVAEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISD--EEEL-----  136 (239)
T ss_pred             EEEcCcccCchhHH-HHHHHHhcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCC--HHHc-----
Confidence            44332  2457765 5555555653  569999999  46677899999988776 6777777765432  1100     


Q ss_pred             cccCCCCCcccEEEecCCCcEEEEeeccccc-ccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHh
Q 012817          154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAEL-EKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (456)
Q Consensus       154 ~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~-~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~  225 (456)
                          .+...++ +..|+++.+ ..+.+.... +++..            ...+.++++|+|+|++++|..+..
T Consensus       137 ----~~~~~~~-v~~~~~~~v-~~~~~~~~~~~~~~~------------~~~~~~~~~Giy~~~~~~~~~~~~  191 (239)
T cd02517         137 ----FNPNVVK-VVLDKDGYA-LYFSRSPIPYPRDSS------------EDFPYYKHIGIYAYRRDFLLRFAA  191 (239)
T ss_pred             ----cCCCCCE-EEECCCCCE-EEecCCCCCCCCCCC------------CCCceeEEEEEEEECHHHHHHHHh
Confidence                0122334 456666654 344321100 01000            112467899999999999987754

CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.

>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=99.82  E-value=1.8e-18  Score=162.32  Aligned_cols=186  Identities=18%  Similarity=0.247  Sum_probs=121.8

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |++.+||||+|.|+||    .   +|+|+|++|+|||+|+++.|.++++++++|+++..    .+.+++.+.     ++.
T Consensus         1 m~~~~iIlA~g~S~R~----~---~K~Ll~i~Gkpll~~~l~~l~~~~i~~ivvv~~~~----~i~~~~~~~-----~~~   64 (245)
T PRK05450          1 MKFLIIIPARYASTRL----P---GKPLADIGGKPMIVRVYERASKAGADRVVVATDDE----RIADAVEAF-----GGE   64 (245)
T ss_pred             CceEEEEecCCCCCCC----C---CCcccccCCcCHHHHHHHHHHhcCCCeEEEECCcH----HHHHHHHHc-----CCE
Confidence            8899999999999999    2   69999999999999999999999999999988632    344444331     233


Q ss_pred             EEE--ccCCcChHHHHHHHHhcC---CCCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCC
Q 012817           81 VAT--VPEDVGTAGALRAIAHHL---TAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA  153 (456)
Q Consensus        81 ~~~--~~~~~gt~~al~~~~~~l---~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~  153 (456)
                      +..  .+...|++.... +...+   ..+.++++.||.  +....++++++.|+.+++++++++.+...  +..      
T Consensus        65 v~~~~~~~~~gt~~~~~-~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~--~~~------  135 (245)
T PRK05450         65 VVMTSPDHPSGTDRIAE-AAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHD--AEE------  135 (245)
T ss_pred             EEECCCcCCCchHHHHH-HHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCC--HHH------
Confidence            333  233456655433 33333   234589999994  55678999999988776666665544321  110      


Q ss_pred             cccCCCCCcccEEEecCCCcEEEEeecccccc-cccccchHHHhhcceeEEecCCccceEEeechHHHHHHHh
Q 012817          154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELE-KDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (456)
Q Consensus       154 ~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~-k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~  225 (456)
                         ..++..++++ +|+++++ .++.++...+ ++..         +.-...+++.++|+|+|++++|..+.+
T Consensus       136 ---~~~~~~~~v~-~d~~g~v-~~~~e~~~~~~~~~~---------~~~~~~~~~~~~Giy~~~~~~l~~~~~  194 (245)
T PRK05450        136 ---AFNPNVVKVV-LDADGRA-LYFSRAPIPYGRDAF---------ADSAPTPVYRHIGIYAYRRGFLRRFVS  194 (245)
T ss_pred             ---hcCcCCCEEE-eCCCCcE-EEecCCCCCCCCCcc---------ccccCccccEEEEEEecCHHHHHHHHh
Confidence               1135567765 8877764 4444322111 0000         000123688999999999999987754

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=99.79  E-value=4.2e-18  Score=171.33  Aligned_cols=195  Identities=18%  Similarity=0.153  Sum_probs=129.8

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCC-cchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVAN-RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~g-kpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i   79 (456)
                      |+|.+||||||.|+||||+|....||||+|++| +|||+++++++...++.+.+|+++.. ..+.+++++.+..  ....
T Consensus         4 ~~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~-~~~~v~~ql~~~~--~~~~   80 (478)
T PRK15460          4 SKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQ-HRFIVAEQLRQLN--KLTE   80 (478)
T ss_pred             CceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHH-HHHHHHHHHHhcC--Cccc
Confidence            678999999999999999955568999999966 79999999999988888888888743 3446666664421  1123


Q ss_pred             EEEEccCCcChHHHHHHHHhcC----C--CCcEEEEcCCcccCCC--hhHHHHHHHh---cCceEEEEEeecccCCCccC
Q 012817           80 EVATVPEDVGTAGALRAIAHHL----T--AKDVLVVSGDLVSDVP--PGAVTAAHRR---HDAVVTAMICSVPVSGLSEA  148 (456)
Q Consensus        80 ~~~~~~~~~gt~~al~~~~~~l----~--~~~~lv~~~D~i~~~~--l~~~l~~~~~---~~a~~t~~~~~~~~~~~~~~  148 (456)
                      +++.++..++|+.++..|...+    .  +..++|+++|++....  |.+.++...+   .+..+|+...+.   .|   
T Consensus        81 ~ii~EP~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt---~P---  154 (478)
T PRK15460         81 NIILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPD---LP---  154 (478)
T ss_pred             cEEecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCC---CC---
Confidence            6777788899998876553322    1  2348899999765432  5555444322   245555444332   22   


Q ss_pred             CCCCCcccCCCCCcccEEEecCC-------C-cEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHH
Q 012817          149 GSSGAKDKTKKPGRYNIIGMDPT-------K-QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL  220 (456)
Q Consensus       149 ~~~~~~~~~~~~~~~~iv~~d~~-------~-~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl  220 (456)
                                 .+.|||+..++.       + ..+..+.|+++    ....+.++..      -..+||+|||+|+.+.|
T Consensus       155 -----------eTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd----~~tA~~yl~~------G~y~WNsGiF~~~a~~~  213 (478)
T PRK15460        155 -----------ETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPN----LETAQAYVAS------GEYYWNSGMFLFRAGRY  213 (478)
T ss_pred             -----------CCCCCeEEeCCccccccccCceEeeEEEeCCC----HHHHHHHHHc------CCEEEecceeheeHHHH
Confidence                       467999987643       1 23555654333    2233344331      24589999999999987


Q ss_pred             HHHHh
Q 012817          221 QEVLD  225 (456)
Q Consensus       221 ~~~~~  225 (456)
                      ..-++
T Consensus       214 l~~~~  218 (478)
T PRK15460        214 LEELK  218 (478)
T ss_pred             HHHHH
Confidence            65543

>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=99.79  E-value=7.4e-18  Score=157.42  Aligned_cols=181  Identities=20%  Similarity=0.285  Sum_probs=117.8

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHC-CCCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~-gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i   79 (456)
                      |++.|||||+|.|+||    .   +|+|+|++|||||+|+++.+.++ ++++++|++++.    .+.+++.+.     ++
T Consensus         1 m~~~aiIlA~g~s~R~----~---~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~~----~i~~~~~~~-----~~   64 (238)
T PRK13368          1 MKVVVVIPARYGSSRL----P---GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDDQ----RIEDAVEAF-----GG   64 (238)
T ss_pred             CcEEEEEecCCCCCCC----C---CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECChH----HHHHHHHHc-----CC
Confidence            7888999999999999    2   59999999999999999999998 799999998642    445544332     23


Q ss_pred             EEEEcc--CCcChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHHHHhcCc-eEEEEEeecccCCCccCCCCCCc
Q 012817           80 EVATVP--EDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDA-VVTAMICSVPVSGLSEAGSSGAK  154 (456)
Q Consensus        80 ~~~~~~--~~~gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a-~~t~~~~~~~~~~~~~~~~~~~~  154 (456)
                      .+....  ...|++ .+..+.+.+..+.++++.||  ++...++.++++.+.+.+. .++.++.+.+...  .       
T Consensus        65 ~v~~~~~~~~~g~~-~~~~a~~~~~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~--~-------  134 (238)
T PRK13368         65 KVVMTSDDHLSGTD-RLAEVMLKIEADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEE--E-------  134 (238)
T ss_pred             eEEecCccCCCccH-HHHHHHHhCCCCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHH--H-------
Confidence            333322  234665 46667666655679999999  6778889999998876543 4555554433110  0       


Q ss_pred             ccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHH
Q 012817          155 DKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV  223 (456)
Q Consensus       155 ~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~  223 (456)
                        ..++..+++ .+++++++ ..+.+..   +.. -++.        ...+.+.++|+|+|++++|..+
T Consensus       135 --~~~p~~~~~-~~~~~g~v-~~~~~~~---~~~-~~~~--------~~~~~~~n~giy~~~~~~l~~~  187 (238)
T PRK13368        135 --FESPNVVKV-VVDKNGDA-LYFSRSP---IPS-RRDG--------ESARYLKHVGIYAFRRDVLQQF  187 (238)
T ss_pred             --hcCcCCCEE-EECCCCCE-EEeeCCC---CCC-CCCC--------CCCceeEEEEEEEeCHHHHHHH
Confidence              001333444 44555653 3443211   100 0000        0113478999999999999865

>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.69  E-value=5e-16  Score=137.94  Aligned_cols=114  Identities=22%  Similarity=0.334  Sum_probs=90.4

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~   81 (456)
                      .|+|||||||.|+||.|    +.||+|+.++||++|+|++++|.++|++++++|++.. ..+.++.++.+..   +..++
T Consensus         3 ~~kavILAAG~GsRlg~----~~PK~Lvev~gr~ii~~~i~~L~~~gi~e~vvV~~g~-~~~lve~~l~~~~---~~~~i   74 (239)
T COG1213           3 PMKAVILAAGFGSRLGP----DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGY-RADLVEEFLKKYP---FNAKI   74 (239)
T ss_pred             ceeEEEEecccccccCC----CCCchhhhcCCeEeHHHHHHHHHHcCCceEEEEeccc-hHHHHHHHHhcCC---cceEE
Confidence            58999999999999965    6899999999999999999999999999999999422 2346677776542   24566


Q ss_pred             EEccCC--cChHHHHHHHHhcCCCCcEEEEcCCcccCCC-hhHHHH
Q 012817           82 ATVPED--VGTAGALRAIAHHLTAKDVLVVSGDLVSDVP-PGAVTA  124 (456)
Q Consensus        82 ~~~~~~--~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~-l~~~l~  124 (456)
                      +..+.+  .+++.+|+.|.+++. +.|+++++|+++... ++.+++
T Consensus        75 v~N~~y~ktN~~~Sl~~akd~~~-~~fii~~sD~vye~~~~e~l~~  119 (239)
T COG1213          75 VINSDYEKTNTGYSLLLAKDYMD-GRFILVMSDHVYEPSILERLLE  119 (239)
T ss_pred             EeCCCcccCCceeEEeeehhhhc-CcEEEEeCCEeecHHHHHHHHh
Confidence            665554  466899999999885 669999999988654 333443

>PLN02917 CMP-KDO synthetase

Probab=99.66  E-value=5.6e-15  Score=141.03  Aligned_cols=182  Identities=13%  Similarity=0.142  Sum_probs=115.6

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCC-CEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNI-KDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi-~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i   79 (456)
                      |++.+||||+|.|+||    .   +|+|+|++|+|||+|+++.+..++. +.++|.+. .   +.+..++.+.     ++
T Consensus        46 ~~i~aIIpA~G~SsR~----~---~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV~~~-~---e~I~~~~~~~-----~v  109 (293)
T PLN02917         46 SRVVGIIPARFASSRF----E---GKPLVHILGKPMIQRTWERAKLATTLDHIVVATD-D---ERIAECCRGF-----GA  109 (293)
T ss_pred             CcEEEEEecCCCCCCC----C---CCCeeeECCEEHHHHHHHHHHcCCCCCEEEEECC-h---HHHHHHHHHc-----CC
Confidence            5678999999999999    2   5999999999999999999998764 55444433 2   3455544321     23


Q ss_pred             EEEEc--cCCcChHHHHHHHHhcCC--CCcEEEEcCC--cccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCC
Q 012817           80 EVATV--PEDVGTAGALRAIAHHLT--AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA  153 (456)
Q Consensus        80 ~~~~~--~~~~gt~~al~~~~~~l~--~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~  153 (456)
                      .++..  ....|++++ ..+++.+.  .+.++++.||  ++....++.+++.+.+. +++.+++.-.+. ++        
T Consensus       110 ~vi~~~~~~~~GT~~~-~~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~-~~--------  178 (293)
T PLN02917        110 DVIMTSESCRNGTERC-NEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSL-KP--------  178 (293)
T ss_pred             EEEeCCcccCCchHHH-HHHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeec-CH--------
Confidence            34433  334577665 46666664  3569999999  67778899999988654 333332221111 11        


Q ss_pred             cccCCCCCcccEEE--ecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHH
Q 012817          154 KDKTKKPGRYNIIG--MDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV  223 (456)
Q Consensus       154 ~~~~~~~~~~~iv~--~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~  223 (456)
                          +++..|+.+.  .|++|+.+.+.+.....+++....+          ..-.+.++|+|.|+.+.|..+
T Consensus       179 ----~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~~~~----------~~i~~~n~Giy~f~~~~L~~l  236 (293)
T PLN02917        179 ----EDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGKVNP----------QFPYLLHLGIQSYDAKFLKIY  236 (293)
T ss_pred             ----HHhcCCCceEEEECCCCeEEEeecCcCCcCCCccccc----------ccceEEEEEEEEeCHHHHHHH
Confidence                1255677774  7877766654433222233211000          012467999999999999844

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.65  E-value=1.7e-15  Score=139.12  Aligned_cols=138  Identities=19%  Similarity=0.246  Sum_probs=105.3

Q ss_pred             cCcchhhcccCHHHHHHHhHhhhccccccC-CCcc-cCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-eeEEC
Q 012817          308 SNSKYCVRLNSIQAFMDINRDVIGEANHLS-GYNF-SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIG  384 (456)
Q Consensus       308 ~~~~~~~~i~~~~~y~~~~~~~l~~~~~~~-~~~~-~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig  384 (456)
                      ...+||.++   ++|+++++++|....... .... .....+++.++.|++++.+.+++.||++|.|++++.|. +++||
T Consensus        44 ~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG  120 (231)
T TIGR03532        44 VLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIG  120 (231)
T ss_pred             EEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeCCeEECCCCEEecCcccCCCeEEC
Confidence            356899999   899999999987543100 0000 11112345556666666666667777777777777666 47999


Q ss_pred             CCCEECCCcEEe-CeEECCCCEECCCcEEc---------CeEECCCCEECCCcEe-cCeEECCCCEECCCcEEcC
Q 012817          385 RHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ---------GSVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       385 ~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~---------~~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~~  448 (456)
                      ++|.|++++.|. +++|+++|.||.++.|.         +++|+++|.||.+++| .+++||++++|++++.+..
T Consensus       121 ~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~  195 (231)
T TIGR03532       121 EGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTE  195 (231)
T ss_pred             CCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence            999999999997 89999999999999997         4899999999999988 5899999999999998754

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.63  E-value=6.1e-15  Score=129.21  Aligned_cols=106  Identities=25%  Similarity=0.409  Sum_probs=65.7

Q ss_pred             ccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEc-------
Q 012817          341 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-------  413 (456)
Q Consensus       341 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-------  413 (456)
                      .+.++.+|++++.|++++.|++++.|+++|.|++++.|.+|+|++++.|++++.+.+|+|++++.|++++.+.       
T Consensus        31 ~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~  110 (163)
T cd05636          31 YIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITANLRFDDK  110 (163)
T ss_pred             EEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcEEcccCcCCc
Confidence            3334555566666666666666666666666666666666666666666666666666666666666666652       


Q ss_pred             ------------------CeEECCCCEECCCcEec-CeEECCCCEECCCcEE
Q 012817          414 ------------------GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEY  446 (456)
Q Consensus       414 ------------------~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~  446 (456)
                                        +++|++++.||.++.|. ++.|++++.|++|+.+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~agsvV  162 (163)
T cd05636         111 PVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVYPGCVV  162 (163)
T ss_pred             ceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEECCCcEe
Confidence                              35666666666666554 5666666666666554

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.62  E-value=1.2e-14  Score=127.36  Aligned_cols=111  Identities=19%  Similarity=0.296  Sum_probs=97.4

Q ss_pred             ccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-eeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECC
Q 012817          341 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICS  419 (456)
Q Consensus       341 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~  419 (456)
                      .+.+..++++++.|++++.|.++++|+++|.|++++.|+ +++||++|.|++++.|.+|+|++++.|++++.+.+++|++
T Consensus        13 ~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~   92 (163)
T cd05636          13 TIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGE   92 (163)
T ss_pred             EECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECC
Confidence            444678888999999999998999999999999999998 5999999999999999999999999999999999999999


Q ss_pred             CCEECCCcEec-------------------------CeEECCCCEECCCcEEcCCee
Q 012817          420 NAQLQERVALK-------------------------DCQVGQGYVVSAGCEYKGESL  451 (456)
Q Consensus       420 ~~~I~~~~~i~-------------------------~~~i~~~~~v~~~~~~~~~~~  451 (456)
                      ++.|++++++.                         +++|++++.|+.++.+.....
T Consensus        93 ~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~  149 (163)
T cd05636          93 NVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVK  149 (163)
T ss_pred             CCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcE
Confidence            99999999873                         477888888888777664444

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B

Probab=99.61  E-value=5e-15  Score=129.43  Aligned_cols=118  Identities=28%  Similarity=0.439  Sum_probs=94.1

Q ss_pred             EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEEc
Q 012817            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV   84 (456)
Q Consensus         5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~   84 (456)
                      +||||||.|+||      +.||+|+|++|+|||+|+++.+.++++++|+|++++.    ++..++..     .++.++..
T Consensus         1 ~vILa~G~s~Rm------g~~K~l~~i~g~~li~~~l~~l~~~~~~~Ivvv~~~~----~~~~~~~~-----~~~~~v~~   65 (160)
T PF12804_consen    1 AVILAAGKSSRM------GGPKALLPIGGKPLIERVLEALREAGVDDIVVVTGEE----EIYEYLER-----YGIKVVVD   65 (160)
T ss_dssp             EEEEESSSCGGG------TSCGGGSEETTEEHHHHHHHHHHHHTESEEEEEESTH----HHHHHHTT-----TTSEEEE-
T ss_pred             CEEECCcCcccC------CCCccceeECCccHHHHHHHHhhccCCceEEEecChH----HHHHHHhc-----cCceEEEe
Confidence            699999999999      3599999999999999999999999999999999863    33333322     24666655


Q ss_pred             cC-CcChHHHHHHHHhcC-CCCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEE
Q 012817           85 PE-DVGTAGALRAIAHHL-TAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMI  137 (456)
Q Consensus        85 ~~-~~gt~~al~~~~~~l-~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~  137 (456)
                      +. ..|+.++++.++..+ ..+++++++||+  +....+..+++.+.+.++++.+..
T Consensus        66 ~~~~~G~~~sl~~a~~~~~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~  122 (160)
T PF12804_consen   66 PEPGQGPLASLLAALSQLPSSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPV  122 (160)
T ss_dssp             STSSCSHHHHHHHHHHTSTTSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEE
T ss_pred             ccccCChHHHHHHHHHhcccCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEE
Confidence            43 489999999999988 678899999996  445679999999887777765543

...

>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]

Probab=99.57  E-value=7e-15  Score=125.02  Aligned_cols=103  Identities=23%  Similarity=0.404  Sum_probs=84.6

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~   82 (456)
                      |+|||||||.|+||.|+ |...||+|+.+.|+|||++.|+.|.++|+.+++||+++..  +++ .|+.+.    .++.++
T Consensus         1 ~nAIIlAAG~gsR~~pl-T~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlk--E~F-eYLkdK----y~vtLv   72 (231)
T COG4750           1 MNAIILAAGLGSRFVPL-TQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLK--EQF-EYLKDK----YDVTLV   72 (231)
T ss_pred             CceEEEecccccccccc-cccCChHHHHhcCcccHHHHHHHHHHCCCceEEEEeeehH--HHH-HHHHHh----cCeEEE
Confidence            68999999999999999 9999999999999999999999999999999999999652  233 355553    468888


Q ss_pred             EccCC--cChHHHHHHHHhcCCCCcEEEEcCCccc
Q 012817           83 TVPED--VGTAGALRAIAHHLTAKDVLVVSGDLVS  115 (456)
Q Consensus        83 ~~~~~--~gt~~al~~~~~~l~~~~~lv~~~D~i~  115 (456)
                      +.+..  ....-++..|.+.+.  +..++.+|.+.
T Consensus        73 yN~kY~~yNn~ySlyla~d~l~--ntYiidsDnyl  105 (231)
T COG4750          73 YNPKYREYNNIYSLYLARDFLN--NTYIIDSDNYL  105 (231)
T ss_pred             eCchHHhhhhHHHHHHHHHHhc--ccEEeccchHh
Confidence            76665  456688888988885  45566888553

>TIGR00454 conserved hypothetical protein TIGR00454

Probab=99.56  E-value=3.8e-14  Score=126.02  Aligned_cols=122  Identities=21%  Similarity=0.267  Sum_probs=92.5

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~   82 (456)
                      |.+||||||+|+||.+     .||+|+|++|+|||+|+++++..++++++++++++.  .+..+.++.+.     ...+.
T Consensus         1 m~aIILAgG~gsRmg~-----~~K~Ll~i~GkplI~~vi~~l~~~~i~~I~Vv~~~~--~~~~~~~l~~~-----~~~~~   68 (183)
T TIGR00454         1 MDALIMAGGKGTRLGG-----VEKPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSPH--TPKTEEYINSA-----YKDYK   68 (183)
T ss_pred             CeEEEECCccCccCCC-----CCceEeEECCEEHHHHHHHHHHhCCCCEEEEEeCCC--HHHHHHHHhhc-----CcEEE
Confidence            6899999999999932     699999999999999999999988999999999754  23455555432     12222


Q ss_pred             EccCCcChHHHHHHHHhcCC-CCcEEEEcCC--cccCCChhHHHHHHHhcCceEEEEE
Q 012817           83 TVPEDVGTAGALRAIAHHLT-AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMI  137 (456)
Q Consensus        83 ~~~~~~gt~~al~~~~~~l~-~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~~~  137 (456)
                       .....|...++..+++.+. .++++++.||  ++....++.+++.+...+.....++
T Consensus        69 -~~~g~G~~~~l~~al~~~~~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~  125 (183)
T TIGR00454        69 -NASGKGYIEDLNECIGELYFSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVM  125 (183)
T ss_pred             -ecCCCCHHHHHHHHhhcccCCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence             2455788888888887543 5689999999  5667789999998877655544333

At this time this gene appears to be present only in Archea

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.56  E-value=8.1e-14  Score=120.92  Aligned_cols=98  Identities=20%  Similarity=0.311  Sum_probs=67.4

Q ss_pred             CCEeCCCcEECCCCEECCCCEECCCCeEe----eeEECCCCEECCCcEE-----eCeEECCCCEECCCcEEcCeEECCCC
Q 012817          351 SAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKV-----VNSVVMNHVTIGDGCSIQGSVICSNA  421 (456)
Q Consensus       351 ~~~i~~~~~i~~~~~i~~~~~I~~~~~i~----~s~Ig~~~~ig~~~~i-----~~s~i~~~~~ig~~~~i~~~ii~~~~  421 (456)
                      ++.+++++.+.+++.||++|.|+++|.|.    ++.||++|.|+++|.|     .+|+|++++.|++++.+.+++|++++
T Consensus         6 ~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~   85 (155)
T cd04745           6 SSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNA   85 (155)
T ss_pred             CeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCC
Confidence            33333334444444555555555555554    3678888888888888     46888888888888888888888888


Q ss_pred             EECCCcEec-CeEECCCCEECCCcEEcC
Q 012817          422 QLQERVALK-DCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       422 ~I~~~~~i~-~~~i~~~~~v~~~~~~~~  448 (456)
                      .|+.+++|. +++|+++++|++++.+..
T Consensus        86 ~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~  113 (155)
T cd04745          86 LVGMNAVVMDGAVIGEESIVGAMAFVKA  113 (155)
T ss_pred             EECCCCEEeCCCEECCCCEECCCCEeCC
Confidence            888888774 477777777777766654

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.56  E-value=7e-14  Score=124.67  Aligned_cols=102  Identities=22%  Similarity=0.377  Sum_probs=76.2

Q ss_pred             eeCCCCEeCCCcEECCCCEECCCCEECCCCeEe----eeEECCCCEECCCcEE-----eCeEECCCCEECCCcEEcCeEE
Q 012817          347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKV-----VNSVVMNHVTIGDGCSIQGSVI  417 (456)
Q Consensus       347 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~----~s~Ig~~~~ig~~~~i-----~~s~i~~~~~ig~~~~i~~~ii  417 (456)
                      .|++++.|++++.|.+++.||++|.|+++|.|.    +.+||++|.||++|.|     .+|+|+++++||+++.|.+|+|
T Consensus        10 ~i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siI   89 (192)
T TIGR02287        10 VVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIV   89 (192)
T ss_pred             cCCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEE
Confidence            344455555555555555566666666666554    4689999999999998     4689999999999999999999


Q ss_pred             CCCCEECCCcEec-CeEECCCCEECCCcEEcC
Q 012817          418 CSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       418 ~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~  448 (456)
                      +++|.||.++.+. +++||+++.|++++.+..
T Consensus        90 g~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~  121 (192)
T TIGR02287        90 GRNALVGMNAVVMDGAVIGENSIVAASAFVKA  121 (192)
T ss_pred             CCCCEECCCcccCCCeEECCCCEEcCCCEECC
Confidence            9999999998774 577777777777766554

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.56  E-value=3.8e-14  Score=108.75  Aligned_cols=79  Identities=51%  Similarity=0.941  Sum_probs=60.2

Q ss_pred             ECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecCeEECCCCEECCCc
Q 012817          366 LGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGC  444 (456)
Q Consensus       366 i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~  444 (456)
                      |++++.|++++.|.++.|+++|.|++++.|.+|+|++++.||+++.|.+|+|++++.|++++.+.+|+|++++.|++++
T Consensus         2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~~ii~~~~~i~~~~   80 (81)
T cd04652           2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKDCLVGSGYRVEAGT   80 (81)
T ss_pred             ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEccCEECCCcEeCCCC
Confidence            4555666666666667777788887777887788888888888888888888888888888888888888888777764

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed

Probab=99.54  E-value=3.5e-13  Score=124.82  Aligned_cols=120  Identities=22%  Similarity=0.288  Sum_probs=89.7

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i   79 (456)
                      |++.+||||||.|+||    +...||+|+|++|+|||+|+++.+..++ +++++|+++.... +.+.......  . ...
T Consensus         2 ~~~~~iILAaG~s~R~----g~~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~-~~~~~~~~~~--~-~~~   73 (227)
T PRK00155          2 MMVYAIIPAAGKGSRM----GADRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDR-PDFAELLLAK--D-PKV   73 (227)
T ss_pred             CceEEEEEcCcccccc----CCCCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHH-HHHHHHhhcc--C-Cce
Confidence            6788999999999999    6668999999999999999999999865 8999999985431 2222211111  0 123


Q ss_pred             EEEEccCCcChHHHHHHHHhcCC-CCcEEEEcCC--cccCCChhHHHHHHHhcC
Q 012817           80 EVATVPEDVGTAGALRAIAHHLT-AKDVLVVSGD--LVSDVPPGAVTAAHRRHD  130 (456)
Q Consensus        80 ~~~~~~~~~gt~~al~~~~~~l~-~~~~lv~~~D--~i~~~~l~~~l~~~~~~~  130 (456)
                      .+.  ....+..++++.+++.+. .+.++++.||  ++....++.+++.+.+.+
T Consensus        74 ~~~--~~~~~~~~sv~~~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~  125 (227)
T PRK00155         74 TVV--AGGAERQDSVLNGLQALPDDDWVLVHDAARPFLTPDDIDRLIEAAEETG  125 (227)
T ss_pred             EEe--CCcchHHHHHHHHHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHhhCC
Confidence            332  333467899999988873 4568999999  677778999999887664

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.54  E-value=1.2e-13  Score=129.96  Aligned_cols=104  Identities=17%  Similarity=0.203  Sum_probs=47.5

Q ss_pred             CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-------------eeEECCCCEECCCcEEeC--------eEECC
Q 012817          344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-------------RSVIGRHCRIGSNVKVVN--------SVVMN  402 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-------------~s~Ig~~~~ig~~~~i~~--------s~i~~  402 (456)
                      +++.|++++.|++++.|++++.||++|.|++++.|.             +++||++|.|+++|.|..        ++|++
T Consensus        28 ~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~  107 (254)
T cd03351          28 PNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVTRIGN  107 (254)
T ss_pred             CCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCceEECC
Confidence            333344444444444444444444444444444443             345555555555555542        44555


Q ss_pred             CCEECCCcEEc-CeEECCCCEECCCcEec-CeEECCCCEECCCcEEc
Q 012817          403 HVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK  447 (456)
Q Consensus       403 ~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~  447 (456)
                      +|.|++++.|. +|+|+++|.|+.++.+. +++||+++.|++++.+.
T Consensus       108 ~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~  154 (254)
T cd03351         108 NNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVH  154 (254)
T ss_pred             CCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceEC
Confidence            55555555442 44444444444444332 34444444444443333

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=99.54  E-value=9.3e-14  Score=130.00  Aligned_cols=112  Identities=19%  Similarity=0.385  Sum_probs=71.1

Q ss_pred             CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEee-eEECCCCEECCCcEEeC--------------------eEECC
Q 012817          344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVN--------------------SVVMN  402 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~~--------------------s~i~~  402 (456)
                      .++.|++++.|++++.|++++.||++|+|.+++.|.+ +.||++|.|+++++|+.                    .+|++
T Consensus       128 ~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~V~Igd  207 (338)
T COG1044         128 AGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGD  207 (338)
T ss_pred             CCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceeceEEECC
Confidence            3333334444444444444444444444444444543 67777777777777742                    25777


Q ss_pred             CCEECCCcEEc-C----eEECCCCEECCCcEe-cCeEECCCCEECCCcEEcCCeeeecc
Q 012817          403 HVTIGDGCSIQ-G----SVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKGESLARKE  455 (456)
Q Consensus       403 ~~~ig~~~~i~-~----~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~~~~~~~~~  455 (456)
                      +|.||.+++|. .    ++|++++.|+..+.| ++|.||.++.|.+++-+.|.+-.++|
T Consensus       208 ~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~  266 (338)
T COG1044         208 DVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKY  266 (338)
T ss_pred             ceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCe
Confidence            78888888885 3    788888888877777 47888888888888888777655543

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.54  E-value=1.5e-13  Score=122.92  Aligned_cols=102  Identities=19%  Similarity=0.328  Sum_probs=77.4

Q ss_pred             eeCCCCEeCCCcEECCCCEECCCCEECCCCeEee----eEECCCCEECCCcEEe-----CeEECCCCEECCCcEEcCeEE
Q 012817          347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR----SVIGRHCRIGSNVKVV-----NSVVMNHVTIGDGCSIQGSVI  417 (456)
Q Consensus       347 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~----s~Ig~~~~ig~~~~i~-----~s~i~~~~~ig~~~~i~~~ii  417 (456)
                      .+++++.|++++.|.+++.||++|.|+++|.|..    .+|+.+|.||++|.|+     +|+|+++++||.++.+.+|+|
T Consensus        12 ~i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vI   91 (196)
T PRK13627         12 VVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVI   91 (196)
T ss_pred             ccCCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEE
Confidence            3445555555555555555555566665555543    5788888888888885     478999999999999999999


Q ss_pred             CCCCEECCCcEec-CeEECCCCEECCCcEEcC
Q 012817          418 CSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       418 ~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~  448 (456)
                      +++|.||.++++. +++||++++|++|+.+..
T Consensus        92 G~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~  123 (196)
T PRK13627         92 GRDALVGMNSVIMDGAVIGEESIVAAMSFVKA  123 (196)
T ss_pred             CCCCEECcCCccCCCcEECCCCEEcCCCEEeC
Confidence            9999999999774 788999999988887665

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.53  E-value=1.5e-13  Score=129.17  Aligned_cols=103  Identities=21%  Similarity=0.381  Sum_probs=48.6

Q ss_pred             CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEee-eEECCCCEECCCcEEe-------------CeEECCCCEECCC
Q 012817          344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV-------------NSVVMNHVTIGDG  409 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~-------------~s~i~~~~~ig~~  409 (456)
                      +.+.+++++.|++++.|++++.||++|.|+++|.|.. +.||++|.|++++.|+             +++|+++|.|+++
T Consensus        10 ~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~   89 (254)
T cd03351          10 PGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREF   89 (254)
T ss_pred             CCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCc
Confidence            3333444444444444444444444444444444442 4555555555555553             3445555555555


Q ss_pred             cEEc--------CeEECCCCEECCCcEe-cCeEECCCCEECCCcEE
Q 012817          410 CSIQ--------GSVICSNAQLQERVAL-KDCQVGQGYVVSAGCEY  446 (456)
Q Consensus       410 ~~i~--------~~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~  446 (456)
                      |.|.        .++||+++.|++++.| ++|+||+++.+++++.+
T Consensus        90 ~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i  135 (254)
T cd03351          90 VTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATL  135 (254)
T ss_pred             cEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccc
Confidence            5553        2445555555555555 34444444444444433

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=99.53  E-value=4.5e-13  Score=123.21  Aligned_cols=115  Identities=23%  Similarity=0.304  Sum_probs=86.0

Q ss_pred             EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHC-CCCEEEEEecCchhhHHHHhhhhhhccCccceEEEE
Q 012817            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT   83 (456)
Q Consensus         5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~-gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~   83 (456)
                      +||||||.|+||    ....||+|++++|+|||+|+++++.++ ++++++|++++... +.+...+..    ...+.++ 
T Consensus         2 aiIlAaG~s~R~----~~~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~-~~~~~~~~~----~~~~~~~-   71 (217)
T TIGR00453         2 AVIPAAGRGTRF----GSGVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQ-EFFQKYLVA----RAVPKIV-   71 (217)
T ss_pred             EEEEcCcccccC----CCCCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHH-HHHHHHhhc----CCcEEEe-
Confidence            799999999999    445799999999999999999999988 79999999975421 233332221    1112332 


Q ss_pred             ccCCcChHHHHHHHHhcC-CCCcEEEEcCC--cccCCChhHHHHHHHhcC
Q 012817           84 VPEDVGTAGALRAIAHHL-TAKDVLVVSGD--LVSDVPPGAVTAAHRRHD  130 (456)
Q Consensus        84 ~~~~~gt~~al~~~~~~l-~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~  130 (456)
                       ....+..++++.+++.+ ..+.++++.||  ++....+..+++.+.+.+
T Consensus        72 -~~~~~~~~sl~~~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~  120 (217)
T TIGR00453        72 -AGGDTRQDSVRNGLKALKDAEWVLVHDAARPFVPKELLDRLLEALRKAG  120 (217)
T ss_pred             -CCCchHHHHHHHHHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHhhCC
Confidence             23345678899998877 55679999999  577778999999876643

Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.53  E-value=1.8e-13  Score=123.50  Aligned_cols=103  Identities=21%  Similarity=0.352  Sum_probs=54.2

Q ss_pred             CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEc-CeEECCC--
Q 012817          344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSN--  420 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ii~~~--  420 (456)
                      +...+++++.|++.+.|++++.|+++|.|++++.|.++.|+++|.|++++.|.+|+|++++.||+++.|. +++|+++  
T Consensus        14 ~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~   93 (193)
T cd03353          14 GDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVH   93 (193)
T ss_pred             CCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCE
Confidence            3444444445555555555555555555555555555555555555555555555555555555555554 4444444  


Q ss_pred             ---------------CEECCCcEecCeEECCCCEECCCcEE
Q 012817          421 ---------------AQLQERVALKDCQVGQGYVVSAGCEY  446 (456)
Q Consensus       421 ---------------~~I~~~~~i~~~~i~~~~~v~~~~~~  446 (456)
                                     +.|++.+.+.++.||.++.|++++.+
T Consensus        94 Ig~~~~i~~s~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~  134 (193)
T cd03353          94 IGNFVEIKKSTIGEGSKANHLSYLGDAEIGEGVNIGAGTIT  134 (193)
T ss_pred             ECCcEEEecceEcCCCEecccceecccEECCCCEEcCceEE
Confidence                           44444444455566666666655544

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase

Probab=99.53  E-value=3.9e-13  Score=125.06  Aligned_cols=186  Identities=17%  Similarity=0.208  Sum_probs=113.5

Q ss_pred             EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEEc
Q 012817            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV   84 (456)
Q Consensus         5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~   84 (456)
                      +||||+|.|+||       .+|+|++++|||||+|+++++..+++++|+|+++..    .+...+.+.     ++..+..
T Consensus         2 ~iIpA~g~s~R~-------~~K~L~~l~GkPli~~~le~~~~~~~d~VvVvt~~~----~i~~~~~~~-----g~~~v~~   65 (238)
T TIGR00466         2 VIIPARLASSRL-------PGKPLEDIFGKPMIVHVAENANESGADRCIVATDDE----SVAQTCQKF-----GIEVCMT   65 (238)
T ss_pred             EEEecCCCCCCC-------CCCeecccCCcCHHHHHHHHHHhCCCCeEEEEeCHH----HHHHHHHHc-----CCEEEEe
Confidence            799999999999       379999999999999999999988899999998643    334333321     2333321


Q ss_pred             c--CCcChHHHHHHHHhcC---CCCcEEEEcCC--cccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccC
Q 012817           85 P--EDVGTAGALRAIAHHL---TAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT  157 (456)
Q Consensus        85 ~--~~~gt~~al~~~~~~l---~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~  157 (456)
                      .  ...|+ +.+..+.+.+   ..+.++++.||  ++....++++++.+.+.+.+++++..+...  +.+         .
T Consensus        66 ~~~~~~Gt-~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d--~~~---------~  133 (238)
T TIGR00466        66 SKHHNSGT-ERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHD--AEE---------A  133 (238)
T ss_pred             CCCCCChh-HHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCC--HHH---------c
Confidence            1  22343 3333343333   23458889999  677888999999886655666666555432  111         0


Q ss_pred             CCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHh
Q 012817          158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (456)
Q Consensus       158 ~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~  225 (456)
                      .+|+. ..+..|.+++.+.+.++.....++.. .   ....|..  ...+...|+|.|+++.|.++..
T Consensus       134 ~~p~~-vk~v~~~~g~alyfsr~~ip~~R~~~-~---~~~tpq~--~~~~~h~Giy~~~~~~L~~~~~  194 (238)
T TIGR00466       134 FNPNA-VKVVLDSQGYALYFSRSLIPFDRDFF-A---KRQTPVG--DNLLRHIGIYGYRAGFIEEYVA  194 (238)
T ss_pred             cCCCc-eEEEeCCCCeEEEecCCCCCCCCCcc-c---ccccccc--cceeEEEEEEeCCHHHHHHHHh
Confidence            11222 22344766765555443221122100 0   0000000  1135678999999999998864

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=99.52  E-value=3.2e-13  Score=130.65  Aligned_cols=87  Identities=21%  Similarity=0.338  Sum_probs=47.5

Q ss_pred             CCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-eeEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-------
Q 012817          343 AQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-------  413 (456)
Q Consensus       343 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-------  413 (456)
                      ++.+.+++++.|++++.|++++.||++|.|++++.|+ ++.||++|.|++++.|. +|+|+++|.|+++|.|+       
T Consensus       101 ~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~  180 (324)
T TIGR01853       101 DPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYA  180 (324)
T ss_pred             CCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCCCccce
Confidence            3334444444444444444444444455555555553 35666666666666665 56666666666666663       


Q ss_pred             --------------CeEECCCCEECCCcEe
Q 012817          414 --------------GSVICSNAQLQERVAL  429 (456)
Q Consensus       414 --------------~~ii~~~~~I~~~~~i  429 (456)
                                    +++|+++|.||++++|
T Consensus       181 ~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I  210 (324)
T TIGR01853       181 HTANGGHVKIPQIGRVIIEDDVEIGANTTI  210 (324)
T ss_pred             eccCCcceecCccceEEECCCcEECCCCEE
Confidence                          2566666666666655

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=99.52  E-value=1.4e-13  Score=117.56  Aligned_cols=108  Identities=20%  Similarity=0.306  Sum_probs=88.7

Q ss_pred             ccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-----CeEECCCCEECCCcEEcCe
Q 012817          341 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-----NSVVMNHVTIGDGCSIQGS  415 (456)
Q Consensus       341 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-----~s~i~~~~~ig~~~~i~~~  415 (456)
                      .+++.++++|+|.|-.++.|++++.|+++++|....  .+-.||+++.|.++|+|+     .+.|+++|+||+++.|.+|
T Consensus        13 ~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~--~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc   90 (176)
T COG0663          13 KIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDV--EPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGC   90 (176)
T ss_pred             CCCCceEECCCCEEEEeEEECCCCEECCceEEEccC--CceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEe
Confidence            345677888888887778888888887777776544  457999999999999997     4689999999999999999


Q ss_pred             EECCCCEECCCcEec-CeEECCCCEECCCcEEcCCe
Q 012817          416 VICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGES  450 (456)
Q Consensus       416 ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~~~  450 (456)
                      .|+++|.||-|++|- ++.||++++|++|+.+....
T Consensus        91 ~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k  126 (176)
T COG0663          91 TIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGK  126 (176)
T ss_pred             EECCCcEEecCceEeCCcEECCCcEEccCCcccCCc
Confidence            999999999999764 58999999998888876644

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.52  E-value=2.9e-13  Score=118.22  Aligned_cols=68  Identities=22%  Similarity=0.458  Sum_probs=34.4

Q ss_pred             eEECCCCEECCCcEEeCe-----------EECCCCEECCCcEEcCeEECCCCEECCCcEe-cCeEECCCCEECCCcEEcC
Q 012817          381 SVIGRHCRIGSNVKVVNS-----------VVMNHVTIGDGCSIQGSVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       381 s~Ig~~~~ig~~~~i~~s-----------~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~~  448 (456)
                      ++||++|.|+++|.|.++           .|++++.++.++.+.+++||++|.|+.+++| +++.||++++|++++.+..
T Consensus        39 i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~  118 (164)
T cd04646          39 IIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPS  118 (164)
T ss_pred             eEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECCCCEEeCCCEECCCCEECCCCEEeCCeEECC
Confidence            355555555555555432           3444444444555555555555555555544 2445555555554444433

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.51  E-value=3.1e-13  Score=127.08  Aligned_cols=103  Identities=18%  Similarity=0.217  Sum_probs=47.0

Q ss_pred             CceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-------------eeEECCCCEECCCcEEe--------CeEECCC
Q 012817          345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-------------RSVIGRHCRIGSNVKVV--------NSVVMNH  403 (456)
Q Consensus       345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-------------~s~Ig~~~~ig~~~~i~--------~s~i~~~  403 (456)
                      .+.|++++.|++++.|.+++.||++|.|++++.|+             +++||++|.|+++|.|.        +++|+++
T Consensus        28 ~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~  107 (254)
T TIGR01852        28 GVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNN  107 (254)
T ss_pred             CCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcEEECCC
Confidence            33333333334444444444444444444444443             34555555555555554        2244444


Q ss_pred             CEECCCcEE-cCeEECCCCEECCCcEec-CeEECCCCEECCCcEEc
Q 012817          404 VTIGDGCSI-QGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK  447 (456)
Q Consensus       404 ~~ig~~~~i-~~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~  447 (456)
                      +.|++++.| .+|+|++++.|++++.+. +++||++++|++++.+.
T Consensus       108 ~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~  153 (254)
T TIGR01852       108 NLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVH  153 (254)
T ss_pred             CEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEEC
Confidence            444444444 244444444444444432 34444444444444433

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.50  E-value=6.6e-13  Score=124.84  Aligned_cols=66  Identities=17%  Similarity=0.215  Sum_probs=28.4

Q ss_pred             EECCCCEECCCcEEe-CeEECCCCEECCCcEEc-CeEECCCCEECCCcEec-CeEECCCCEECCCcEEc
Q 012817          382 VIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK  447 (456)
Q Consensus       382 ~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~  447 (456)
                      +||++|.|+.++.|. +|+|++++.|+.++.+. +++|+++|.|+.++.|. ++.|+++++|++++.+.
T Consensus       103 ~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~  171 (254)
T TIGR01852       103 RIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVS  171 (254)
T ss_pred             EECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEEeeeeeEe
Confidence            344444444444442 34444444444444443 44444444444444443 34444444444444443

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production

Probab=99.49  E-value=1.1e-12  Score=120.63  Aligned_cols=120  Identities=20%  Similarity=0.247  Sum_probs=86.6

Q ss_pred             eEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (456)
Q Consensus         4 ~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~   82 (456)
                      .+||||||.|+||.    ...||+|+|++|+|||+|+++.+..++ +++++|++++... +.... ..... ....+.++
T Consensus         2 ~~vILAaG~s~R~~----~~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~-~~~~~-~~~~~-~~~~~~~~   74 (218)
T cd02516           2 AAIILAAGSGSRMG----ADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDI-DLAKE-LAKYG-LSKVVKIV   74 (218)
T ss_pred             EEEEECCcccccCC----CCCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHH-HHHHH-HHhcc-cCCCeEEE
Confidence            58999999999994    337999999999999999999999876 8999999875432 12221 11111 11123333


Q ss_pred             EccCCcChHHHHHHHHhcCC---CCcEEEEcCC--cccCCChhHHHHHHHhcCce
Q 012817           83 TVPEDVGTAGALRAIAHHLT---AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAV  132 (456)
Q Consensus        83 ~~~~~~gt~~al~~~~~~l~---~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~  132 (456)
                        ....+..++++.+++++.   .+.++++.||  ++....++.+++.+.+.++.
T Consensus        75 --~~~~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~~  127 (218)
T cd02516          75 --EGGATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGAA  127 (218)
T ss_pred             --CCchHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCcE
Confidence              334566788999988773   4568899999  67777899999988766543

4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.49  E-value=3e-13  Score=103.69  Aligned_cols=79  Identities=18%  Similarity=0.445  Sum_probs=72.8

Q ss_pred             eCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCc
Q 012817          348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERV  427 (456)
Q Consensus       348 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~  427 (456)
                      |++++.|++++.+. ++.|+++|.|++++.|.+++|+++|.|++++.|.+|+|++++.|++++.+.+|+|++++.|++++
T Consensus         2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~~ii~~~~~i~~~~   80 (81)
T cd04652           2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKDCLVGSGYRVEAGT   80 (81)
T ss_pred             ccCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEccCEECCCcEeCCCC
Confidence            56777888888885 68999999999999999999999999999999999999999999999999999999999999764

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>PLN02296 carbonate dehydratase

Probab=99.49  E-value=6.1e-13  Score=124.38  Aligned_cols=104  Identities=20%  Similarity=0.292  Sum_probs=69.3

Q ss_pred             CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-----------CeEECCCCEECCCcEE
Q 012817          344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-----------NSVVMNHVTIGDGCSI  412 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-----------~s~i~~~~~ig~~~~i  412 (456)
                      +.++|+|++.+.+++.||++|.|+++|+|....  .+.+||++|.|+++|.|.           +|+|+++|+||.+|.|
T Consensus        57 ~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~--~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI  134 (269)
T PLN02296         57 KDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDV--NSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVL  134 (269)
T ss_pred             CCCEECCCcEEEcceEECCCCEECCCCEEEcCC--CceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCcee
Confidence            444555555544444444444444444443221  135788888888888884           5788888888888888


Q ss_pred             cCeEECCCCEECCCcEe-cCeEECCCCEECCCcEEcCC
Q 012817          413 QGSVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKGE  449 (456)
Q Consensus       413 ~~~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~~~  449 (456)
                      .+|+|+++|.||.+++| ++++|+++++|++|+.+...
T Consensus       135 ~g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~  172 (269)
T PLN02296        135 HGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQN  172 (269)
T ss_pred             cCCEECCCcEECCCcEECCCeEECCCCEECCCCEEecC
Confidence            88888888888888876 46777777777777666544

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=99.49  E-value=3.5e-13  Score=126.16  Aligned_cols=104  Identities=19%  Similarity=0.338  Sum_probs=44.4

Q ss_pred             CCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-eeEECCCCEECCCcEEe-CeEECCCCEECCCcEE--------
Q 012817          343 AQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSI--------  412 (456)
Q Consensus       343 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i--------  412 (456)
                      +++.+|++++.||+++.|+++++|+++|.||++|.|. +++|++++.||++|.|+ +++|+.+......+.+        
T Consensus       121 g~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~  200 (338)
T COG1044         121 GPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQI  200 (338)
T ss_pred             CCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEccee
Confidence            3344444444444444444444444444444444443 24444444444444444 4444433222211111        


Q ss_pred             cCeEECCCCEECCCcEec-----CeEECCCCEECCCcEE
Q 012817          413 QGSVICSNAQLQERVALK-----DCQVGQGYVVSAGCEY  446 (456)
Q Consensus       413 ~~~ii~~~~~I~~~~~i~-----~~~i~~~~~v~~~~~~  446 (456)
                      ++.+|+++|.||+++.|+     +++|++++.|.+.+.+
T Consensus       201 g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqI  239 (338)
T COG1044         201 GRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQI  239 (338)
T ss_pred             ceEEECCceEEcccceeccccccCceecCCcEEcceeEE
Confidence            135555555555555553     2444444444444333

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.48  E-value=7.9e-13  Score=116.09  Aligned_cols=106  Identities=15%  Similarity=0.261  Sum_probs=71.0

Q ss_pred             CceeCCCCEeCCCcEECC----CCEECCCCEECCCCeEe-----eeEECCCCEECCCcEEe-CeEECCCCEECCCcEEcC
Q 012817          345 NNIIHPSAELGSKTTVGP----HCMLGEGSQMGDKCSVK-----RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQG  414 (456)
Q Consensus       345 ~~~i~~~~~i~~~~~i~~----~~~i~~~~~I~~~~~i~-----~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~~  414 (456)
                      +..+++.+.|++++.|+.    ++.||++|.|++++.|.     ++.||++|.|++++.|. +++|+++|.||.+|.|.+
T Consensus        20 ~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~   99 (167)
T cd00710          20 DVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFN   99 (167)
T ss_pred             eEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCCEECCCCEEEC
Confidence            333444444444444433    23466666666666663     35677777777777777 477888888888888878


Q ss_pred             eEECCCCEECCCcEecCeEECCCCEECCCcEEcCCe
Q 012817          415 SVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGES  450 (456)
Q Consensus       415 ~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~~~~~~~  450 (456)
                      +.|+++|.|++++.|.++.|++++.|++++.+....
T Consensus       100 ~~Ig~~~~Ig~~s~i~~~~i~~~~~v~~~~~v~~~~  135 (167)
T cd00710         100 AKVGDNCVIGHNAVVDGVEIPPGRYVPAGAVITSQT  135 (167)
T ss_pred             CEECCCCEEcCCCEEeCCEeCCCCEECCCCEEcCCC
Confidence            888888888888877777778888887777766443

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.48  E-value=9.6e-13  Score=115.56  Aligned_cols=109  Identities=18%  Similarity=0.331  Sum_probs=83.4

Q ss_pred             cCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-----CeEECCCCEECCCcEEc-Ce
Q 012817          342 SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-----NSVVMNHVTIGDGCSIQ-GS  415 (456)
Q Consensus       342 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-----~s~i~~~~~ig~~~~i~-~~  415 (456)
                      +++++.|+|++.|.+++.+|+++.|+++|.|+.+.. .++.||++|.|++++.|.     ++.|++++.|+.++.|. .+
T Consensus         5 ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~-~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~   83 (167)
T cd00710           5 IDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEG-TPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPA   83 (167)
T ss_pred             eCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCCC-CcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCE
Confidence            345555555555555555555555555555543321 247999999999999994     67899999999999997 59


Q ss_pred             EECCCCEECCCcEecCeEECCCCEECCCcEEcCCee
Q 012817          416 VICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESL  451 (456)
Q Consensus       416 ii~~~~~I~~~~~i~~~~i~~~~~v~~~~~~~~~~~  451 (456)
                      +|+++|.||.++.|.++.||+++.|++++.+.+..+
T Consensus        84 ~Ig~~~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~~~i  119 (167)
T cd00710          84 YIGDNCFIGFRSVVFNAKVGDNCVIGHNAVVDGVEI  119 (167)
T ss_pred             EECCCCEECCCCEEECCEECCCCEEcCCCEEeCCEe
Confidence            999999999999999999999999999999976444

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.48  E-value=6.7e-13  Score=125.00  Aligned_cols=16  Identities=31%  Similarity=0.320  Sum_probs=7.6

Q ss_pred             eEECCCCEECCCcEEe
Q 012817          381 SVIGRHCRIGSNVKVV  396 (456)
Q Consensus       381 s~Ig~~~~ig~~~~i~  396 (456)
                      +.||++|.|++++.|.
T Consensus        81 v~IG~~~~I~e~~~I~   96 (262)
T PRK05289         81 LVIGDNNTIREFVTIN   96 (262)
T ss_pred             EEECCCCEECCCeEEe
Confidence            4444444444444443

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.47  E-value=1.1e-12  Score=113.52  Aligned_cols=97  Identities=18%  Similarity=0.278  Sum_probs=59.5

Q ss_pred             CCEeCCCcEECCCCEECCCCEECCCCeEee----eEECCCCEECCCcEEeC-----eEECCCCEECCCcEEcCeEECCCC
Q 012817          351 SAELGSKTTVGPHCMLGEGSQMGDKCSVKR----SVIGRHCRIGSNVKVVN-----SVVMNHVTIGDGCSIQGSVICSNA  421 (456)
Q Consensus       351 ~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~----s~Ig~~~~ig~~~~i~~-----s~i~~~~~ig~~~~i~~~ii~~~~  421 (456)
                      ++.|++++.|.+++.||++|.|++++.|..    .+||++|.|+++|.|..     ++|++++.|++++.+.+++|++++
T Consensus         6 ~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~   85 (154)
T cd04650           6 KAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYV   85 (154)
T ss_pred             CeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCC
Confidence            333333343444444444444444454443    37777777777777763     667777777777777777777777


Q ss_pred             EECCCcEe-cCeEECCCCEECCCcEEc
Q 012817          422 QLQERVAL-KDCQVGQGYVVSAGCEYK  447 (456)
Q Consensus       422 ~I~~~~~i-~~~~i~~~~~v~~~~~~~  447 (456)
                      .|+.++.+ .+++|+++++|++++.+.
T Consensus        86 ~Ig~~~~i~~~~~Ig~~~~vg~~~~v~  112 (154)
T cd04650          86 IVGMGAILLNGAKIGDHVIIGAGAVVT  112 (154)
T ss_pred             EEcCCCEEeCCCEECCCCEECCCCEEC
Confidence            77777765 356666666666665544

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=99.47  E-value=5.2e-13  Score=101.93  Aligned_cols=76  Identities=39%  Similarity=0.691  Sum_probs=54.2

Q ss_pred             ECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecC-eEECCCCEEC
Q 012817          366 LGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD-CQVGQGYVVS  441 (456)
Q Consensus       366 i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~-~~i~~~~~v~  441 (456)
                      |+++|.|++++.|.+++||++|.|++++.|.+|+|+++++|++++.|.+++|++++.|++++.+.+ +++++++.|+
T Consensus         2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~   78 (79)
T cd03356           2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVE   78 (79)
T ss_pred             ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEEC
Confidence            455555666666666677777777777777777777777777777777777777777777777765 6666666654

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function

Probab=99.46  E-value=7.5e-13  Score=118.49  Aligned_cols=120  Identities=28%  Similarity=0.380  Sum_probs=89.4

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~   82 (456)
                      +.+||||||.|+||.      .||+|+|++|||||+|+++.+...++++++|+++....  ....+...     ..+.++
T Consensus         1 ~~~vIlAgG~s~R~g------~~K~l~~~~g~~li~~~i~~l~~~~~~~i~vv~~~~~~--~~~~~~~~-----~~~~~~   67 (186)
T cd04182           1 IAAIILAAGRSSRMG------GNKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEAD--AVRAALAG-----LPVVVV   67 (186)
T ss_pred             CeEEEECCCCCCCCC------CCceeCeeCCeeHHHHHHHHHHhCCCCcEEEECCCcHH--HHHHHhcC-----CCeEEE
Confidence            358999999999993      39999999999999999999999889999999975422  22222211     223333


Q ss_pred             EccC-CcChHHHHHHHHhcCC--CCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEE
Q 012817           83 TVPE-DVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTA  135 (456)
Q Consensus        83 ~~~~-~~gt~~al~~~~~~l~--~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~  135 (456)
                      ..+. ..|+.++++.+++.+.  .+.+++++||+  +....++.+++.+...++.+.+
T Consensus        68 ~~~~~~~G~~~~i~~al~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~v~  125 (186)
T cd04182          68 INPDWEEGMSSSLAAGLEALPADADAVLILLADQPLVTAETLRALIDAFREDGAGIVA  125 (186)
T ss_pred             eCCChhhCHHHHHHHHHHhccccCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence            3222 3689999999988875  56799999994  6666788998887765555433

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=99.46  E-value=1.8e-12  Score=127.22  Aligned_cols=13  Identities=8%  Similarity=-0.133  Sum_probs=8.5

Q ss_pred             CccceEEeechHH
Q 012817          207 LMDAHMYAFNRSV  219 (456)
Q Consensus       207 ~~~~giYi~~~~v  219 (456)
                      ...++.+++++++
T Consensus        52 ~~~A~a~Iv~~d~   64 (343)
T PRK00892         52 TTKAGAVIVSPDD   64 (343)
T ss_pred             ccCCeEEEechhh
Confidence            3466777777764

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.45  E-value=1.3e-12  Score=117.78  Aligned_cols=84  Identities=11%  Similarity=0.203  Sum_probs=50.2

Q ss_pred             EECCCCEECCCCeEeeeEECCCCEECCCcEEe-CeEECC-----------------CCEECCCcEEcCeEECCCCEECCC
Q 012817          365 MLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMN-----------------HVTIGDGCSIQGSVICSNAQLQER  426 (456)
Q Consensus       365 ~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-~s~i~~-----------------~~~ig~~~~i~~~ii~~~~~I~~~  426 (456)
                      .|+++|.|++++.|.+++|++++.|++++.|. +++|++                 ++.+++.+.+++|+|++++.||++
T Consensus        52 ~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ig~~~~i~~~~~i~~~~Ig~~~~ig~~  131 (193)
T cd03353          52 TIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEGSKANHLSYLGDAEIGEGVNIGAG  131 (193)
T ss_pred             EECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecceEcCCCEecccceecccEECCCCEEcCc
Confidence            45555555555555556666666665555554 444444                 444444445556888999988888


Q ss_pred             cEec--------CeEECCCCEECCCcEEcC
Q 012817          427 VALK--------DCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       427 ~~i~--------~~~i~~~~~v~~~~~~~~  448 (456)
                      +.+.        .++|++++.++.++.+..
T Consensus       132 ~~~~~~~~~~~~~~vigd~~~ig~~~~i~~  161 (193)
T cd03353         132 TITCNYDGVNKHRTVIGDNVFIGSNSQLVA  161 (193)
T ss_pred             eEEeccCCccccCCEECCCeEEccCCEEeC
Confidence            7652        356666666666655443

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.45  E-value=1.4e-12  Score=112.85  Aligned_cols=87  Identities=23%  Similarity=0.357  Sum_probs=54.8

Q ss_pred             CCCEECCCCEECCCCeEe----eeEECCCCEECCCcEEeC-----eEECCCCEECCCcEEcCeEECCCCEECCCcEec-C
Q 012817          362 PHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKVVN-----SVVMNHVTIGDGCSIQGSVICSNAQLQERVALK-D  431 (456)
Q Consensus       362 ~~~~i~~~~~I~~~~~i~----~s~Ig~~~~ig~~~~i~~-----s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~-~  431 (456)
                      +++.||++|.|++++.|.    +++||++|.|++++.|..     ++|++++.|+.+|.+.+++|++++.|++++.+. +
T Consensus        16 g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~v~~~   95 (153)
T cd04645          16 GDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMGAIILDG   95 (153)
T ss_pred             EeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEECCCCEEcCC
Confidence            333444444444444443    357777777777777765     477777777777777777777777777777664 5


Q ss_pred             eEECCCCEECCCcEEcC
Q 012817          432 CQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       432 ~~i~~~~~v~~~~~~~~  448 (456)
                      ++|++++.|++++.+..
T Consensus        96 ~~ig~~~~ig~~~~v~~  112 (153)
T cd04645          96 AVIGKGSIVAAGSLVPP  112 (153)
T ss_pred             CEECCCCEECCCCEECC
Confidence            66666666666655543

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=99.45  E-value=1.2e-12  Score=100.04  Aligned_cols=77  Identities=25%  Similarity=0.475  Sum_probs=54.8

Q ss_pred             eCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcC-eEECCCCEEC
Q 012817          348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQG-SVICSNAQLQ  424 (456)
Q Consensus       348 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~-~ii~~~~~I~  424 (456)
                      ++|++.|++++.|++++.|+++|.|++++.|.+++|++++.|++++.|.+|++++++.|++++.+.+ ++|+++++|+
T Consensus         2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~i~   79 (80)
T cd05824           2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTIK   79 (80)
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceEEC
Confidence            4566677777777777777777777777777777777777777777777777777777777777753 6666666554

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.44  E-value=1.3e-12  Score=123.11  Aligned_cols=67  Identities=19%  Similarity=0.217  Sum_probs=35.0

Q ss_pred             EECCCCEECCCcEEe-CeEECCCCEECCCcEEc-CeEECCCCEECCCcEec-CeEECCCCEECCCcEEcC
Q 012817          382 VIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       382 ~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~  448 (456)
                      .||++|.|+.++.|. +|+|++++.++.++.+. +++|+++|.||.++.|. ++.||++++|++++.+..
T Consensus       107 ~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~gs~V~~  176 (262)
T PRK05289        107 RIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGAHAMVGGMSGVSQ  176 (262)
T ss_pred             EECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEECCCCEEeeecceec
Confidence            455555555555554 44555555555555543 45555555555555443 455555555555555443

>PLN02472 uncharacterized protein

Probab=99.44  E-value=2.4e-12  Score=118.79  Aligned_cols=104  Identities=15%  Similarity=0.201  Sum_probs=69.6

Q ss_pred             cCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-----------CeEECCCCEECCCc
Q 012817          342 SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-----------NSVVMNHVTIGDGC  410 (456)
Q Consensus       342 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-----------~s~i~~~~~ig~~~  410 (456)
                      ++..+++.|++.+.+++.|++++.|+++++|....  ...+||++|.|+++|.|+           +++|+++|+||++|
T Consensus        62 i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~--~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s  139 (246)
T PLN02472         62 VAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDL--NKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYS  139 (246)
T ss_pred             cCCCCEECCCCEEecCEEECCCCEEcCCCEEecCC--cceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCc
Confidence            33455566666555555555555555555443221  124788888888888884           57889999999999


Q ss_pred             EEcCeEECCCCEECCCcEec-CeEECCCCEECCCcEEc
Q 012817          411 SIQGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK  447 (456)
Q Consensus       411 ~i~~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~  447 (456)
                      .|.+|+|+++|.||.+++|. +++|+++++|++++.+.
T Consensus       140 ~L~~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~  177 (246)
T PLN02472        140 LLRSCTIEPECIIGQHSILMEGSLVETHSILEAGSVLP  177 (246)
T ss_pred             EECCeEEcCCCEECCCCEECCCCEECCCCEECCCCEEC
Confidence            88888888888888888763 56666666666655544

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.44  E-value=2.1e-12  Score=116.66  Aligned_cols=100  Identities=14%  Similarity=0.312  Sum_probs=77.2

Q ss_pred             CCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEc---------------
Q 012817          349 HPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ---------------  413 (456)
Q Consensus       349 ~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~---------------  413 (456)
                      ++.+.|++++.| .++.||+++.|+++|.|.+++||++|.|++++.+.+++|+++|.|++++.|.               
T Consensus         6 ~~~~~I~~~a~i-~~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~   84 (204)
T TIGR03308         6 SPEPTLHPTAEL-TESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFT   84 (204)
T ss_pred             CCCCeECCCcEE-eccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCcccccccc
Confidence            344455555555 3467777777777777778888888888888888888888888888887763               


Q ss_pred             -----------------------CeEECCCCEECCCcEec-CeEECCCCEECCCcEEcCC
Q 012817          414 -----------------------GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGE  449 (456)
Q Consensus       414 -----------------------~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~~  449 (456)
                                             +++|++++.||.+++|. +++||++++|++++.+.+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~  144 (204)
T TIGR03308        85 YRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKD  144 (204)
T ss_pred             cccccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCC
Confidence                                   67788888899888875 7899999999998887653

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional

Probab=99.44  E-value=8.1e-12  Score=122.99  Aligned_cols=127  Identities=23%  Similarity=0.318  Sum_probs=93.0

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i   79 (456)
                      |++.+||||||.|+||    +...||+|+|++|+|||+|+++.+...+ +++++|++++... +..+.+....   . .+
T Consensus         4 m~v~aIILAAG~GsRm----g~~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~-~~~~~~~~~~---~-~v   74 (378)
T PRK09382          4 SDISLVIVAAGRSTRF----SAEVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDI-AYMKKALPEI---K-FV   74 (378)
T ss_pred             CcceEEEECCCCCccC----CCCCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHH-HHHHHhcccC---C-eE
Confidence            4578999999999999    6678999999999999999999999987 7999999875432 2222222110   1 12


Q ss_pred             EEEEccCCcChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHHHHhcCceEEEEEeec
Q 012817           80 EVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSV  140 (456)
Q Consensus        80 ~~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~~~~~~  140 (456)
                      .+  .....+..++++.+++.+.++.+++..||  ++....++.+++...+.+  ..+...++
T Consensus        75 ~~--v~gG~~r~~SV~~gL~~l~~d~VLVhdadrPfv~~e~I~~li~~~~~~~--a~i~~~pv  133 (378)
T PRK09382         75 TL--VTGGATRQESVRNALEALDSEYVLIHDAARPFVPKELIDRLIEALDKAD--CVLPALPV  133 (378)
T ss_pred             EE--eCCCchHHHHHHHHHHhcCCCeEEEeeccccCCCHHHHHHHHHHhhcCC--eEEEEEEe
Confidence            22  34456788999999988866678999999  666677888888776543  44444443

>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family

Probab=99.44  E-value=1.4e-12  Score=117.10  Aligned_cols=120  Identities=17%  Similarity=0.215  Sum_probs=89.0

Q ss_pred             EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEEc
Q 012817            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV   84 (456)
Q Consensus         5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~   84 (456)
                      +||||||.|+||      +.||+|+|++|+|||+|+++.+.++++++++|++++... +.+..+. .    ..++.++..
T Consensus         2 ~iIla~G~s~R~------g~~K~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~~~-~~~~~~~-~----~~~v~~v~~   69 (188)
T TIGR03310         2 AIILAAGLSSRM------GQNKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEAD-ELVALLA-N----HSNITLVHN   69 (188)
T ss_pred             eEEECCCCcccC------CCCceecccCCeeHHHHHHHHHHHcCCCcEEEEeCCcHH-HHHHHhc-c----CCCeEEEEC
Confidence            799999999999      369999999999999999999998899999999986532 1122221 1    123555543


Q ss_pred             cCC-cChHHHHHHHHh-cCCCCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEE
Q 012817           85 PED-VGTAGALRAIAH-HLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAM  136 (456)
Q Consensus        85 ~~~-~gt~~al~~~~~-~l~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~  136 (456)
                      +.. .|+.++++.+++ ....+.+++++||.  +....++.+++.+...+..+++.
T Consensus        70 ~~~~~g~~~si~~~l~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~  125 (188)
T TIGR03310        70 PQYAEGQSSSIKLGLELPVQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIVVP  125 (188)
T ss_pred             cChhcCHHHHHHHHhcCCCCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEEEe
Confidence            332 688899998887 33346799999994  55667999998887666655443

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.43  E-value=1.5e-12  Score=132.98  Aligned_cols=106  Identities=20%  Similarity=0.381  Sum_probs=67.9

Q ss_pred             CCceeCCCCEeCCCcEECC-----CCEECCCCEECCCCeEe-eeEECCCCEECCCcEEe-----------------CeEE
Q 012817          344 QNNIIHPSAELGSKTTVGP-----HCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-----------------NSVV  400 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~-----~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i~-----------------~s~i  400 (456)
                      ++++|++++.|+.++.|++     ++.||++|+|++++.|. +++||++|.||+++.+.                 +++|
T Consensus       279 ~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~i  358 (446)
T PRK14353        279 PNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDATI  358 (446)
T ss_pred             CCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcCcEE
Confidence            3344444444444444433     45566666666666665 46666666666665554                 4555


Q ss_pred             CCCCEECCCcEE-------c-CeEECCCCEECCCcEec-CeEECCCCEECCCcEEcCC
Q 012817          401 MNHVTIGDGCSI-------Q-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGE  449 (456)
Q Consensus       401 ~~~~~ig~~~~i-------~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~~  449 (456)
                      +++|.||.++.+       . +++||++|.||.+++|. ++.||++++|++++.+...
T Consensus       359 g~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~~~  416 (446)
T PRK14353        359 GAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVITED  416 (446)
T ss_pred             cCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECCCCEECcc
Confidence            566666666554       1 57899999999998775 7899999999999887653

>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]

Probab=99.43  E-value=1.5e-12  Score=110.43  Aligned_cols=110  Identities=25%  Similarity=0.407  Sum_probs=88.1

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~   82 (456)
                      |.+||+|||+|+||    +. .-|||++++|||||+|+++.+.+ .+++++++++.+  ...++.++.+.     .++++
T Consensus         1 m~~iiMAGGrGtRm----g~-~EKPlleV~GkpLI~~v~~al~~-~~d~i~v~isp~--tp~t~~~~~~~-----gv~vi   67 (177)
T COG2266           1 MMAIIMAGGRGTRM----GR-PEKPLLEVCGKPLIDRVLEALRK-IVDEIIVAISPH--TPKTKEYLESV-----GVKVI   67 (177)
T ss_pred             CceEEecCCccccc----CC-CcCcchhhCCccHHHHHHHHHHh-hcCcEEEEeCCC--CHhHHHHHHhc-----CceEE
Confidence            57999999999999    33 66999999999999999999988 789999999755  23566666553     35555


Q ss_pred             EccCCcChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHHHH
Q 012817           83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHR  127 (456)
Q Consensus        83 ~~~~~~gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~~~  127 (456)
                      . ....|...-++.+++.+. .++|++++|  ++.+..++.+++.+.
T Consensus        68 ~-tpG~GYv~Dl~~al~~l~-~P~lvvsaDLp~l~~~~i~~vi~~~~  112 (177)
T COG2266          68 E-TPGEGYVEDLRFALESLG-TPILVVSADLPFLNPSIIDSVIDAAA  112 (177)
T ss_pred             E-cCCCChHHHHHHHHHhcC-CceEEEecccccCCHHHHHHHHHHHh
Confidence            2 345789999999999996 499999999  444556888888776

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=99.43  E-value=1.7e-12  Score=127.43  Aligned_cols=14  Identities=36%  Similarity=0.783  Sum_probs=5.4

Q ss_pred             EECCCCEECCCcEE
Q 012817          382 VIGRHCRIGSNVKV  395 (456)
Q Consensus       382 ~Ig~~~~ig~~~~i  395 (456)
                      +||++|.||.++.|
T Consensus       205 ~Ig~~v~IGa~~~I  218 (343)
T PRK00892        205 IIGDDVEIGANTTI  218 (343)
T ss_pred             EECCCcEECCCcEE
Confidence            33333333333333

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=99.43  E-value=1.5e-12  Score=104.73  Aligned_cols=77  Identities=29%  Similarity=0.450  Sum_probs=51.3

Q ss_pred             EeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecC
Q 012817          353 ELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD  431 (456)
Q Consensus       353 ~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~  431 (456)
                      .|++++.| .+++||++|.|+ ++.|.+|+|+++|.|++++.|.+|+|++++.||+++.+.+|+|++++.|++++.+.+
T Consensus         3 ~i~~~~~i-~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~   79 (104)
T cd04651           3 YIGRRGEV-KNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGG   79 (104)
T ss_pred             eecCCCEE-EeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEECC
Confidence            44455555 456666666666 666666777777777777777777777777777777777777777776666666543

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional

Probab=99.42  E-value=1.4e-12  Score=121.06  Aligned_cols=127  Identities=17%  Similarity=0.284  Sum_probs=91.7

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i   79 (456)
                      |++.+||||||.|+||    +.+.||+|++++|+|||+|+++++..++ +++++|+++.... ..+.+++.+.......+
T Consensus         1 ~~~~~iIlAaG~g~R~----g~~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~-~~~~~~~~~~~~~~~~~   75 (230)
T PRK13385          1 MNYELIFLAAGQGKRM----NAPLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQER-KHVQDLMKQLNVADQRV   75 (230)
T ss_pred             CceEEEEECCeecccc----CCCCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhH-HHHHHHHHhcCcCCCce
Confidence            6778999999999999    6668999999999999999999998764 8999999875432 23333333221111123


Q ss_pred             EEEEccCCcChHHHHHHHHhcCCCC-cEEEEcCC--cccCCChhHHHHHHHhcCceEE
Q 012817           80 EVATVPEDVGTAGALRAIAHHLTAK-DVLVVSGD--LVSDVPPGAVTAAHRRHDAVVT  134 (456)
Q Consensus        80 ~~~~~~~~~gt~~al~~~~~~l~~~-~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t  134 (456)
                      .++  ....+..++++.+++.+.++ .++++.||  ++....++++++.+.+.++.+.
T Consensus        76 ~~v--~~g~~r~~sv~~gl~~~~~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~~~  131 (230)
T PRK13385         76 EVV--KGGTERQESVAAGLDRIGNEDVILVHDGARPFLTQDIIDRLLEGVAKYGAAIC  131 (230)
T ss_pred             EEc--CCCchHHHHHHHHHHhccCCCeEEEccCCCCCCCHHHHHHHHHHHhhCCcEEE
Confidence            332  34455679999998877543 47888899  6777789999998877654433

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.42  E-value=3.4e-12  Score=110.70  Aligned_cols=97  Identities=14%  Similarity=0.317  Sum_probs=77.7

Q ss_pred             CCceeCCCCEeCCCcEECC---CCEECCCCEECCCCeE-----eeeEECCCCEECCCcEEeCeEECCCCEECCCcEEc-C
Q 012817          344 QNNIIHPSAELGSKTTVGP---HCMLGEGSQMGDKCSV-----KRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-G  414 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~---~~~i~~~~~I~~~~~i-----~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~  414 (456)
                      .+..|++++.|++++.|..   ++.||++|.|+++|.|     .+++|+++|.|++++.+.+++|+++|.||.++.|. +
T Consensus        17 g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~g   96 (155)
T cd04745          17 GDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNALVGMNAVVMDG   96 (155)
T ss_pred             ccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCCEECCCCEEeCC
Confidence            4455566666666665543   4678888999999988     46899999999999999999999999999999996 6


Q ss_pred             eEECCCCEECCCcEec-CeEECCCCEE
Q 012817          415 SVICSNAQLQERVALK-DCQVGQGYVV  440 (456)
Q Consensus       415 ~ii~~~~~I~~~~~i~-~~~i~~~~~v  440 (456)
                      ++|++++.|++++++. ++.|++++++
T Consensus        97 ~~Ig~~~~Ig~~s~v~~~~~i~~~~~v  123 (155)
T cd04745          97 AVIGEESIVGAMAFVKAGTVIPPRSLI  123 (155)
T ss_pred             CEECCCCEECCCCEeCCCCEeCCCCEE
Confidence            9999999999887775 5667777666

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.42  E-value=1.5e-12  Score=99.40  Aligned_cols=76  Identities=36%  Similarity=0.716  Sum_probs=58.2

Q ss_pred             ECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEec-CeEECCCCEEC
Q 012817          366 LGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK-DCQVGQGYVVS  441 (456)
Q Consensus       366 i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~-~~~i~~~~~v~  441 (456)
                      |+++|.|++++.|.+++|+++|.|+++++|.+|+|++++.|+++++|.+++|++++.|++++.+. +++|++++.|+
T Consensus         2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v~~~~~ig   78 (79)
T cd05787           2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIG   78 (79)
T ss_pred             ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCCEEeCCcEeC
Confidence            45666666666666778888888888888888888888888888888888888888888776664 45555555554

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.42  E-value=3.3e-12  Score=119.23  Aligned_cols=15  Identities=27%  Similarity=0.299  Sum_probs=7.6

Q ss_pred             EECCCCEECCCcEEe
Q 012817          382 VIGRHCRIGSNVKVV  396 (456)
Q Consensus       382 ~Ig~~~~ig~~~~i~  396 (456)
                      .||++|.|++++.|.
T Consensus        79 ~IG~~~~I~e~vtI~   93 (255)
T PRK12461         79 EIGDRNVIREGVTIH   93 (255)
T ss_pred             EECCceEECCccEEe
Confidence            455555555555443

>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety

Probab=99.42  E-value=1.8e-12  Score=119.74  Aligned_cols=124  Identities=13%  Similarity=0.173  Sum_probs=89.0

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      ++.+||||||.|+||    .   +|+|+|++|||||+|+++.+.+++ +++|+|++...    .+.++..+.   .....
T Consensus         1 ~~~~iIlA~G~s~R~----~---~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~~~----~i~~~~~~~---~~~~~   66 (223)
T cd02513           1 KILAIIPARGGSKGI----P---GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTDDE----EIAEVARKY---GAEVP   66 (223)
T ss_pred             CeEEEEecCCCCCCC----C---CcccchhCCccHHHHHHHHHHhCCCCCEEEEECCcH----HHHHHHHHh---CCCce
Confidence            357999999999999    2   599999999999999999999887 78888876533    233333221   11111


Q ss_pred             EEE----ccCCcChHHHHHHHHhcCCC-----CcEEEEcCC--cccCCChhHHHHHHHhcCceEEEEEee
Q 012817           81 VAT----VPEDVGTAGALRAIAHHLTA-----KDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICS  139 (456)
Q Consensus        81 ~~~----~~~~~gt~~al~~~~~~l~~-----~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~~~~~  139 (456)
                      +..    ..+..++.++++.+++.+..     +.++++.||  ++....++++++.+.+.+++.++.+.+
T Consensus        67 ~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~  136 (223)
T cd02513          67 FLRPAELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTE  136 (223)
T ss_pred             eeCChHHCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            211    12235788889888776532     579999999  577788999999988777776555544

CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.42  E-value=4.1e-12  Score=110.99  Aligned_cols=101  Identities=12%  Similarity=0.162  Sum_probs=74.6

Q ss_pred             CCceeCCCCEeCCCcEEC---CCCEECCCCEECCCCeEee-----------eEECCCCEECCCcEEeCeEECCCCEECCC
Q 012817          344 QNNIIHPSAELGSKTTVG---PHCMLGEGSQMGDKCSVKR-----------SVIGRHCRIGSNVKVVNSVVMNHVTIGDG  409 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~---~~~~i~~~~~I~~~~~i~~-----------s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~  409 (456)
                      ++..+++++.|++++.+.   +++.||++|.|+++|.|.+           +.||++|.++.++.|.+++|+++|.||.+
T Consensus        16 g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd~~~Ig~~   95 (164)
T cd04646          16 GDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGNNNVFESK   95 (164)
T ss_pred             CceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECCCCEEeCC
Confidence            455556666666666553   3466777777777777764           46888888888888888889999999998


Q ss_pred             cEEc-CeEECCCCEECCCcEec-CeEECCCCEECCCc
Q 012817          410 CSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGC  444 (456)
Q Consensus       410 ~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~  444 (456)
                      |.|. +++|++++.||++++|. +..|+++++++.+.
T Consensus        96 a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~  132 (164)
T cd04646          96 SFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGAD  132 (164)
T ss_pred             CEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCCc
Confidence            8885 78888888888887764 56677777766654

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=99.41  E-value=2.9e-12  Score=124.01  Aligned_cols=40  Identities=20%  Similarity=0.449  Sum_probs=17.6

Q ss_pred             CCcEECCCCEECCCCEECCCCeEe-eeEECCCCEECCCcEE
Q 012817          356 SKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKV  395 (456)
Q Consensus       356 ~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i  395 (456)
                      +++.|++++.||++|.|++++.|. +++||++|.|+++|+|
T Consensus       132 ~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vI  172 (324)
T TIGR01853       132 PGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVI  172 (324)
T ss_pred             CCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEE
Confidence            333333333344444444444443 3455555555555555

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=99.40  E-value=3e-12  Score=97.71  Aligned_cols=78  Identities=19%  Similarity=0.484  Sum_probs=70.1

Q ss_pred             eeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcC-eEECCCCEECC
Q 012817          347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQG-SVICSNAQLQE  425 (456)
Q Consensus       347 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~-~ii~~~~~I~~  425 (456)
                      +|++++.|++++.+.+ +.|+++|.|++++.|.+++|+++|.|++++.|.+|+|++++.|++++.+.+ +++++++.|++
T Consensus         1 ~ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~~   79 (79)
T cd03356           1 LIGESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVED   79 (79)
T ss_pred             CccCCcEECCCCEEeC-CEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEECc
Confidence            3567778888888865 899999999999999999999999999999999999999999999999986 99999888873

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]

Probab=99.40  E-value=7.8e-12  Score=109.86  Aligned_cols=184  Identities=20%  Similarity=0.227  Sum_probs=127.7

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |++.+||+|.=.++||       ..|||-.|+|+|||.|+.++..++|.++++|.+.++...+.++++.         .+
T Consensus         2 ~~~~viIPAR~~STRL-------pgKPLadI~GkpmI~rV~e~a~~s~~~rvvVATDde~I~~av~~~G---------~~   65 (247)
T COG1212           2 MKFVVIIPARLASTRL-------PGKPLADIGGKPMIVRVAERALKSGADRVVVATDDERIAEAVQAFG---------GE   65 (247)
T ss_pred             CceEEEEecchhcccC-------CCCchhhhCCchHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhC---------CE
Confidence            6788999999999999       6799999999999999999999999999999998665444555432         33


Q ss_pred             EEEccC--CcChHHHHHHHHhcCC---CCcEEEEcCC--cccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCC
Q 012817           81 VATVPE--DVGTAGALRAIAHHLT---AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA  153 (456)
Q Consensus        81 ~~~~~~--~~gt~~al~~~~~~l~---~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~  153 (456)
                      .+..+.  +.|| +.+..+.+.+.   ++.++-+.||  ++....++.+++...++++++..+..+...  +.+.     
T Consensus        66 avmT~~~h~SGT-dR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~--~ee~-----  137 (247)
T COG1212          66 AVMTSKDHQSGT-DRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITD--EEEA-----  137 (247)
T ss_pred             EEecCCCCCCcc-HHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCC--HHHh-----
Confidence            333333  3455 55666655553   3458889999  677778999999988888887666655432  2221     


Q ss_pred             cccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHh
Q 012817          154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (456)
Q Consensus       154 ~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~  225 (456)
                          .+|+. -.+..|.+++.|++.++..+...+..-+            ...+.-.|||.|++.+|..|..
T Consensus       138 ----~nPN~-VKvV~d~~g~ALYFSRs~iP~~rd~~~~------------~p~l~HIGIYayr~~~L~~f~~  192 (247)
T COG1212         138 ----FNPNV-VKVVLDKEGYALYFSRAPIPYGRDNFGG------------TPFLRHIGIYAYRAGFLERFVA  192 (247)
T ss_pred             ----cCCCc-EEEEEcCCCcEEEEEcCCCCCcccccCC------------cchhheeehHHhHHHHHHHHHh
Confidence                12332 3356788888888887644333211000            1234456999999999988864

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.39  E-value=5.6e-12  Score=117.71  Aligned_cols=85  Identities=14%  Similarity=0.283  Sum_probs=47.8

Q ss_pred             CEECCCCEECCCCeEee-------eEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-CeEECCCCEECCCcEec-CeE
Q 012817          364 CMLGEGSQMGDKCSVKR-------SVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQ  433 (456)
Q Consensus       364 ~~i~~~~~I~~~~~i~~-------s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-~~~  433 (456)
                      +.||++|.|+++++|.+       +.||++|.+..++.|. +|.|+++|.|+.++.+. ++.|++++.|+.++.|. ++.
T Consensus        78 v~IG~~~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~  157 (255)
T PRK12461         78 LEIGDRNVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCR  157 (255)
T ss_pred             eEECCceEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCE
Confidence            33444555555555442       3444444444444443 55555555555555553 56666777777666554 577


Q ss_pred             ECCCCEECCCcEEcC
Q 012817          434 VGQGYVVSAGCEYKG  448 (456)
Q Consensus       434 i~~~~~v~~~~~~~~  448 (456)
                      ||++++|++++.+..
T Consensus       158 IG~~a~Vg~gs~V~~  172 (255)
T PRK12461        158 IGALAMMAGGSRISK  172 (255)
T ss_pred             ECCCcEECCCceEec
Confidence            777777777766543

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.39  E-value=9.9e-12  Score=107.46  Aligned_cols=104  Identities=16%  Similarity=0.208  Sum_probs=81.2

Q ss_pred             CCceeCCCCEeCCCcEECCC---CEECCCCEECCCCeEee-----eEECCCCEECCCcEEeCeEECCCCEECCCcEEc-C
Q 012817          344 QNNIIHPSAELGSKTTVGPH---CMLGEGSQMGDKCSVKR-----SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-G  414 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~~---~~i~~~~~I~~~~~i~~-----s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~  414 (456)
                      ++..+++++.|++++.|.+.   +.||++|.|+++|.|..     ++||+++.|++++.+.+++|++++.||.++.+. +
T Consensus        17 ~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~   96 (154)
T cd04650          17 GDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVIVGMGAILLNG   96 (154)
T ss_pred             eeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCCEEcCCCEEeCC
Confidence            44455555555555555443   48888999999998875     799999999999999999999999999999995 8


Q ss_pred             eEECCCCEECCCcEec-CeEECCCCE-ECCCcEEc
Q 012817          415 SVICSNAQLQERVALK-DCQVGQGYV-VSAGCEYK  447 (456)
Q Consensus       415 ~ii~~~~~I~~~~~i~-~~~i~~~~~-v~~~~~~~  447 (456)
                      ++|++++.|++++.+. +..++++++ .|..+.+.
T Consensus        97 ~~Ig~~~~vg~~~~v~~g~~i~~~~v~~G~pa~~~  131 (154)
T cd04650          97 AKIGDHVIIGAGAVVTPGKEIPDYSLVLGVPAKVV  131 (154)
T ss_pred             CEECCCCEECCCCEECCCcEeCCCCEEeccCceEe
Confidence            9999999999888776 467777777 45545543

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=99.39  E-value=3.5e-12  Score=109.03  Aligned_cols=94  Identities=17%  Similarity=0.266  Sum_probs=70.3

Q ss_pred             CceeCCCCEeCCCcEEC---CCCEECCCCEECCCCeEe-----eeEECCCCEECCCcEEeCeEECCCCEECCCcEEc-Ce
Q 012817          345 NNIIHPSAELGSKTTVG---PHCMLGEGSQMGDKCSVK-----RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GS  415 (456)
Q Consensus       345 ~~~i~~~~~i~~~~~i~---~~~~i~~~~~I~~~~~i~-----~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~  415 (456)
                      +..|+.++.|++++.+.   .+..||++|.|.++|.|+     ++.||++|.||+++.|+.|.|+++|.||-++.|- +|
T Consensus        29 dV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~~lIGmgA~vldga  108 (176)
T COG0663          29 DVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDNVLIGMGATVLDGA  108 (176)
T ss_pred             eEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCCcEEecCceEeCCc
Confidence            34444444444444443   244589999999999997     4799999999999999999999999999998886 48


Q ss_pred             EECCCCEECCCcEecC-eEECCCC
Q 012817          416 VICSNAQLQERVALKD-CQVGQGY  438 (456)
Q Consensus       416 ii~~~~~I~~~~~i~~-~~i~~~~  438 (456)
                      .||++|.||+|+.+.. ..+.+++
T Consensus       109 ~IG~~~iVgAgalV~~~k~~p~~~  132 (176)
T COG0663         109 VIGDGSIVGAGALVTPGKEIPGGS  132 (176)
T ss_pred             EECCCcEEccCCcccCCcCCCCCe
Confidence            8888888888877764 3334333

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.39  E-value=4.7e-12  Score=112.94  Aligned_cols=96  Identities=19%  Similarity=0.376  Sum_probs=71.7

Q ss_pred             CceeCCCCEeCCCcEECC---CCEECCCCEECCCCeEe-----eeEECCCCEECCCcEEeCeEECCCCEECCCcEEc-Ce
Q 012817          345 NNIIHPSAELGSKTTVGP---HCMLGEGSQMGDKCSVK-----RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GS  415 (456)
Q Consensus       345 ~~~i~~~~~i~~~~~i~~---~~~i~~~~~I~~~~~i~-----~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~  415 (456)
                      +.+|++++.|++++.|.+   ++.||++|.|+++|.|+     +|+|+++|.|++++.|.+|+|+++|.||.++.+. ++
T Consensus        26 ~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~~IG~ga~I~~g~  105 (192)
T TIGR02287        26 DVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNALVGMNAVVMDGA  105 (192)
T ss_pred             eEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCCEECCCcccCCCe
Confidence            334444444444444432   34567888888888883     5899999999999999999999999999999996 78


Q ss_pred             EECCCCEECCCcEec-CeEECCCCEE
Q 012817          416 VICSNAQLQERVALK-DCQVGQGYVV  440 (456)
Q Consensus       416 ii~~~~~I~~~~~i~-~~~i~~~~~v  440 (456)
                      +|++++.|++++.+. +..|.+++++
T Consensus       106 ~IG~~s~Vgags~V~~~~~ip~~~l~  131 (192)
T TIGR02287       106 VIGENSIVAASAFVKAGAEMPAQYLV  131 (192)
T ss_pred             EECCCCEEcCCCEECCCCEECCCeEE
Confidence            899998888777664 4556666554

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>PLN02296 carbonate dehydratase

Probab=99.39  E-value=8.1e-12  Score=116.88  Aligned_cols=97  Identities=16%  Similarity=0.301  Sum_probs=75.9

Q ss_pred             CCceeCCCCEeCCCcEECCC---CEECCCCEECCCCeEe-----------eeEECCCCEECCCcEEeCeEECCCCEECCC
Q 012817          344 QNNIIHPSAELGSKTTVGPH---CMLGEGSQMGDKCSVK-----------RSVIGRHCRIGSNVKVVNSVVMNHVTIGDG  409 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~~---~~i~~~~~I~~~~~i~-----------~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~  409 (456)
                      .+..|++++.|++++.|.++   +.||++|.|+++|.|+           +++||++|.||++|.|.+|+|+++|.||.+
T Consensus        69 G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~Igd~v~IG~g  148 (269)
T PLN02296         69 GDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDEAFVGMG  148 (269)
T ss_pred             cceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEECCCcEECCC
Confidence            34455555666555555543   3788999999999885           579999999999999999999999999999


Q ss_pred             cEEc-CeEECCCCEECCCcEec-CeEECCCCEE
Q 012817          410 CSIQ-GSVICSNAQLQERVALK-DCQVGQGYVV  440 (456)
Q Consensus       410 ~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v  440 (456)
                      +.|. ++.|++++.|+++++|. ++.|++++++
T Consensus       149 a~I~~gv~Ig~~a~IgagSvV~~~~~I~~~~~~  181 (269)
T PLN02296        149 ATLLDGVVVEKHAMVAAGALVRQNTRIPSGEVW  181 (269)
T ss_pred             cEECCCeEECCCCEECCCCEEecCCEeCCCeEE
Confidence            9885 78888888888887775 5667777764

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=8.4e-13  Score=131.32  Aligned_cols=88  Identities=23%  Similarity=0.486  Sum_probs=75.5

Q ss_pred             cCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEc-CeEECCC
Q 012817          342 SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSN  420 (456)
Q Consensus       342 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ii~~~  420 (456)
                      ...+..|+.++.||.++.| .|++||+||.||.+++|.+|.|++||+||+||+|++|+|+++|+|+++|.+. +|||+.+
T Consensus       330 v~~~~~ig~gT~Ig~g~~I-~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~~~  408 (673)
T KOG1461|consen  330 VGANVVIGAGTKIGSGSKI-SNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFG  408 (673)
T ss_pred             ccceEEecccccccCCCee-ecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCcccCCCcEEeee
Confidence            3456677777777777777 6888999999999999999999999999999999999999999999999995 8999999


Q ss_pred             CEECCCcEec
Q 012817          421 AQLQERVALK  430 (456)
Q Consensus       421 ~~I~~~~~i~  430 (456)
                      +++|++-++.
T Consensus       409 VVv~~~~~l~  418 (673)
T KOG1461|consen  409 VVVGRNFVLP  418 (673)
T ss_pred             eEeCCCcccc
Confidence            8888665553

>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide

Probab=99.39  E-value=1.9e-12  Score=115.46  Aligned_cols=112  Identities=27%  Similarity=0.356  Sum_probs=85.0

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~   82 (456)
                      +.+||||||.|+||    .  .||+|+|++|+|||+|+++.+... +.+++|+++....  .   +. .     .++.++
T Consensus         1 ~~~iILAgG~s~Rm----g--~~K~ll~~~g~~ll~~~i~~l~~~-~~~iivv~~~~~~--~---~~-~-----~~~~~v   62 (181)
T cd02503           1 ITGVILAGGKSRRM----G--GDKALLELGGKPLLEHVLERLKPL-VDEVVISANRDQE--R---YA-L-----LGVPVI   62 (181)
T ss_pred             CcEEEECCCccccC----C--CCceeeEECCEEHHHHHHHHHHhh-cCEEEEECCCChH--H---Hh-h-----cCCcEe
Confidence            46899999999999    3  499999999999999999999887 8999999985532  1   11 1     123444


Q ss_pred             Ecc-CCcChHHHHHHHHhcCCCCcEEEEcCCc--ccCCChhHHHHHHHhcCceE
Q 012817           83 TVP-EDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVV  133 (456)
Q Consensus        83 ~~~-~~~gt~~al~~~~~~l~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~  133 (456)
                      ..+ ...|+.++++.+++.+..+.+++++||+  +....++.+++.+ ..+.++
T Consensus        63 ~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~  115 (181)
T cd02503          63 PDEPPGKGPLAGILAALRAAPADWVLVLACDMPFLPPELLERLLAAA-EEGADA  115 (181)
T ss_pred             eCCCCCCCCHHHHHHHHHhcCCCeEEEEeCCcCCCCHHHHHHHHHhh-ccCCCE
Confidence            333 2478899999999888767899999994  5566788888876 334443

The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.38  E-value=6.6e-13  Score=127.02  Aligned_cols=117  Identities=18%  Similarity=0.308  Sum_probs=92.8

Q ss_pred             hccccccCCCcccCCCceeCCC-----CEeCCCcEEC-----CCCEECCCCEECCCCeEee-eEECCCCEECCCcEEeCe
Q 012817          330 IGEANHLSGYNFSAQNNIIHPS-----AELGSKTTVG-----PHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNS  398 (456)
Q Consensus       330 l~~~~~~~~~~~~~~~~~i~~~-----~~i~~~~~i~-----~~~~i~~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~~s  398 (456)
                      +..+..+.+...++.++.|+|+     +.|+.++.|.     +++.|+++|.||+.+.+++ +.|++++.||+.|.+.++
T Consensus       277 I~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a  356 (460)
T COG1207         277 IEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKA  356 (460)
T ss_pred             EecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEecc
Confidence            4444444444455566666666     4445555443     3566788888888888886 999999999999999999


Q ss_pred             EECCCCEECCCcEEcCeEECCCCEECCCcEe--------cCeEECCCCEECCCcEE
Q 012817          399 VVMNHVTIGDGCSIQGSVICSNAQLQERVAL--------KDCQVGQGYVVSAGCEY  446 (456)
Q Consensus       399 ~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i--------~~~~i~~~~~v~~~~~~  446 (456)
                      .|+.++++++-+.|+++.||.++.||+|++.        ..++||+++.||.++.+
T Consensus       357 ~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~L  412 (460)
T COG1207         357 TIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQL  412 (460)
T ss_pred             cccCCccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcE
Confidence            9999999999999999999999999999976        24899999999888764

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=99.38  E-value=2.1e-12  Score=132.19  Aligned_cols=101  Identities=19%  Similarity=0.283  Sum_probs=66.3

Q ss_pred             CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-CeEECCCCEECCCcEEcCeEECCCCE
Q 012817          344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQGSVICSNAQ  422 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~~~ii~~~~~  422 (456)
                      ++..|++++.|++++.|. ++.|+++|.|+++|.|.+++||++|.||+++.|. +++|+++|.||+++.+.+++|++++.
T Consensus       278 ~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~~~  356 (451)
T TIGR01173       278 GKVKIGDDVVIGPGCVIK-NSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKGSK  356 (451)
T ss_pred             CceEECCCCEECCCcEEe-eeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECCCcE
Confidence            344444444444444442 4567777777777878788888888888888887 68888888888887777666666555


Q ss_pred             ECCCcEecCeEECCCCEECCCcE
Q 012817          423 LQERVALKDCQVGQGYVVSAGCE  445 (456)
Q Consensus       423 I~~~~~i~~~~i~~~~~v~~~~~  445 (456)
                      |++.+.+.+|.||+++.|++++.
T Consensus       357 i~~~~~i~~~~Ig~~~~ig~~~~  379 (451)
T TIGR01173       357 AGHLSYLGDAEIGSNVNIGAGTI  379 (451)
T ss_pred             ecceeeEeeeEEcCCcEECCCeE
Confidence            55555444444444444444433

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.37  E-value=1.8e-11  Score=104.08  Aligned_cols=93  Identities=20%  Similarity=0.336  Sum_probs=42.0

Q ss_pred             CceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-eeEECCCCEECCCcEEeC---------eEECCCCEECCCcEEc-
Q 012817          345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVVN---------SVVMNHVTIGDGCSIQ-  413 (456)
Q Consensus       345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i~~---------s~i~~~~~ig~~~~i~-  413 (456)
                      .+.+++++.|.+.+.+..++.|+++|.|+.++.|. +++||++|.|++++.|.+         ++|++++.||.++.|. 
T Consensus        13 ~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~~   92 (139)
T cd03350          13 GAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVVE   92 (139)
T ss_pred             CCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEECC
Confidence            33333333333333344444444444444444443 245555555555555532         3444555555555543 


Q ss_pred             CeEECCCCEECCCcEec-CeEECCC
Q 012817          414 GSVICSNAQLQERVALK-DCQVGQG  437 (456)
Q Consensus       414 ~~ii~~~~~I~~~~~i~-~~~i~~~  437 (456)
                      ++.|++++.|+++++|. ++.|+++
T Consensus        93 gv~Ig~~~~Ig~g~~V~~~~~I~~~  117 (139)
T cd03350          93 GVIVGKGAVLAAGVVLTQSTPIYDR  117 (139)
T ss_pred             CCEECCCCEEcCCCEEcCCeEeccc
Confidence            45555555555544443 3444444

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=99.37  E-value=5e-12  Score=117.91  Aligned_cols=120  Identities=21%  Similarity=0.303  Sum_probs=87.3

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHC-CCCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~-gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~   81 (456)
                      +.+||||||.|+||    +...||+|++++|+|||+|+++.+... ++++++|+++.... +.++..+...   ...+.+
T Consensus        25 i~aIILAAG~gsRm----g~~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~-~~~~~~~~~~---~~~i~~   96 (252)
T PLN02728         25 VSVILLAGGVGKRM----GANMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYR-DVFEEAVENI---DVPLKF   96 (252)
T ss_pred             eEEEEEcccccccC----CCCCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHH-HHHHHHHHhc---CCceEE
Confidence            57899999999999    666899999999999999999999884 79999999974422 2333333221   112333


Q ss_pred             EEccCCcChHHHHHHHHhcCCCCcEEEEcCC----cccCCChhHHHHHHHhcCce
Q 012817           82 ATVPEDVGTAGALRAIAHHLTAKDVLVVSGD----LVSDVPPGAVTAAHRRHDAV  132 (456)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D----~i~~~~l~~~l~~~~~~~a~  132 (456)
                        .....+..++++.+++.+..+..+|+.+|    ++....+..+++...+.++.
T Consensus        97 --v~gg~~r~~SV~~gl~~l~~~~~~VlihDaarP~vs~~~i~~li~~~~~~ga~  149 (252)
T PLN02728         97 --ALPGKERQDSVFNGLQEVDANSELVCIHDSARPLVTSADIEKVLKDAAVHGAA  149 (252)
T ss_pred             --cCCCCchHHHHHHHHHhccCCCCEEEEecCcCCCCCHHHHHHHHHHHhhCCeE
Confidence              34556678899999888754444556666    55566788999888777654

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=99.36  E-value=5.8e-12  Score=111.49  Aligned_cols=114  Identities=25%  Similarity=0.486  Sum_probs=84.9

Q ss_pred             ccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEee-eEECCCCEECCCcEE------eC-------------eEE
Q 012817          341 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKV------VN-------------SVV  400 (456)
Q Consensus       341 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i------~~-------------s~i  400 (456)
                      .+++.++|+|+|.|++++.||+.|+|+++++|++++.|++ .+|-..++||++++|      +.             -+|
T Consensus         5 ~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~I   84 (260)
T COG1043           5 KIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLII   84 (260)
T ss_pred             ccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEE
Confidence            4667888888888888888888888888888888887763 444444455554444      31             257


Q ss_pred             CCCCEECCCcEEc-C-------eEECCCCEECCCcEe-cCeEECCCCEECCCcEEcCCeeeec
Q 012817          401 MNHVTIGDGCSIQ-G-------SVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKGESLARK  454 (456)
Q Consensus       401 ~~~~~ig~~~~i~-~-------~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~~~~~~~~  454 (456)
                      +++++|-+++++. +       +.||+++.+.+++.| ++|+||.+++..+++.+.|++.++-
T Consensus        85 G~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD  147 (260)
T COG1043          85 GDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGD  147 (260)
T ss_pred             CCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECC
Confidence            7777777777774 2       678888888888866 5999999999999999999877643

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=99.36  E-value=9.2e-12  Score=95.18  Aligned_cols=76  Identities=21%  Similarity=0.454  Sum_probs=63.9

Q ss_pred             CCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecC-eEECCCCE
Q 012817          361 GPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD-CQVGQGYV  439 (456)
Q Consensus       361 ~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~-~~i~~~~~  439 (456)
                      ++++.|++++.|+++     ++|+++|.||++++|.+|+++++++|++++.|.+|++++++.|++++.+.+ ++|++++.
T Consensus         3 ~~~~~I~~~~~i~~~-----~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~   77 (80)
T cd05824           3 DPSAKIGKTAKIGPN-----VVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVT   77 (80)
T ss_pred             CCCCEECCCCEECCC-----CEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceE
Confidence            445555555555554     488999999999999999999999999999999999999999999998875 78888877


Q ss_pred             EC
Q 012817          440 VS  441 (456)
Q Consensus       440 v~  441 (456)
                      |+
T Consensus        78 i~   79 (80)
T cd05824          78 IK   79 (80)
T ss_pred             EC
Confidence            65

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PLN02472 uncharacterized protein

Probab=99.35  E-value=1.2e-11  Score=114.14  Aligned_cols=97  Identities=15%  Similarity=0.256  Sum_probs=65.6

Q ss_pred             CCceeCCCCEeCCCcEECCC---CEECCCCEECCCCeEe-----------eeEECCCCEECCCcEEeCeEECCCCEECCC
Q 012817          344 QNNIIHPSAELGSKTTVGPH---CMLGEGSQMGDKCSVK-----------RSVIGRHCRIGSNVKVVNSVVMNHVTIGDG  409 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~~---~~i~~~~~I~~~~~i~-----------~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~  409 (456)
                      ++..|++++.|++++.+.++   ..||++|.|+++|.|+           +++||++|.||++|.|.+|+|+++|.||.+
T Consensus        76 G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~v~IG~~  155 (246)
T PLN02472         76 GQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEPECIIGQH  155 (246)
T ss_pred             cCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEcCCCEECCC
Confidence            34445555555555544332   4567777777777774           488999999999999988888888888888


Q ss_pred             cEEc-CeEECCCCEECCCcEec-CeEECCCCEE
Q 012817          410 CSIQ-GSVICSNAQLQERVALK-DCQVGQGYVV  440 (456)
Q Consensus       410 ~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v  440 (456)
                      |.|. +++|++++.|++++++. +..|.++.++
T Consensus       156 svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~  188 (246)
T PLN02472        156 SILMEGSLVETHSILEAGSVLPPGRRIPTGELW  188 (246)
T ss_pred             CEECCCCEECCCCEECCCCEECCCCEeCCCCEE
Confidence            8774 77777777777655443 3444444443

>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB

Probab=99.35  E-value=7.7e-12  Score=112.54  Aligned_cols=119  Identities=19%  Similarity=0.225  Sum_probs=85.4

Q ss_pred             eEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhh-HHHHhhhhhhccCccceEEE
Q 012817            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAA-LRVGGWISAAYVDRLHVEVA   82 (456)
Q Consensus         4 ~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~-~~i~~~~~~~~~~~~~i~~~   82 (456)
                      .+||||||.|+||      +.+|+|++++|+|||+|+++.+.+.++++++|+++..... ..+..+..    ...++.++
T Consensus         2 ~~vILAgG~s~Rm------g~~K~ll~~~g~~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~----~~~~~~~~   71 (190)
T TIGR03202         2 VAIYLAAGQSRRM------GENKLALPLGETTLGSASLKTALSSRLSKVIVVIGEKYAHLSWLDPYLL----ADERIMLV   71 (190)
T ss_pred             eEEEEcCCccccC------CCCceeceeCCccHHHHHHHHHHhCCCCcEEEEeCCccchhhhhhHhhh----cCCCeEEE
Confidence            5899999999999      3589999999999999999988888899999999754211 11221111    11234444


Q ss_pred             EccC-CcChHHHHHHHHhcCC---CCcEEEEcCC--cccCCChhHHHHHHHhcCce
Q 012817           83 TVPE-DVGTAGALRAIAHHLT---AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAV  132 (456)
Q Consensus        83 ~~~~-~~gt~~al~~~~~~l~---~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~  132 (456)
                      ..++ ..|+..+++.+++++.   .+.+++++||  ++....+..+++...+....
T Consensus        72 ~~~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~  127 (190)
T TIGR03202        72 CCRDACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRRPDD  127 (190)
T ss_pred             ECCChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCC
Confidence            4333 3588899999988752   4669999999  56666788888876554433

In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.35  E-value=2.2e-11  Score=103.63  Aligned_cols=96  Identities=19%  Similarity=0.239  Sum_probs=47.8

Q ss_pred             CCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-CeEECCCCEECCCcEEc---------CeEEC
Q 012817          349 HPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ---------GSVIC  418 (456)
Q Consensus       349 ~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~---------~~ii~  418 (456)
                      +|++.|++++.|++++.|.+.+.|+.++     .||++|.|++++.|. ++.|+++|.|+.++.++         .++|+
T Consensus         5 ~~~~~i~~~~~Ig~~~~I~~~~~i~~~~-----~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig   79 (139)
T cd03350           5 PPGAIIRDGAFIGPGAVLMMPSYVNIGA-----YVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIE   79 (139)
T ss_pred             CCCcEECCCCEECCCCEECCCCEEccCC-----EECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEEC
Confidence            3444444444444444444444443333     333333333333333 33444444444444443         35666


Q ss_pred             CCCEECCCcEe-cCeEECCCCEECCCcEEcCC
Q 012817          419 SNAQLQERVAL-KDCQVGQGYVVSAGCEYKGE  449 (456)
Q Consensus       419 ~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~~~  449 (456)
                      +++.|+++++| .++.|++++.|++++.+...
T Consensus        80 ~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~  111 (139)
T cd03350          80 DDVFIGANCEVVEGVIVGKGAVLAAGVVLTQS  111 (139)
T ss_pred             CCCEECCCCEECCCCEECCCCEEcCCCEEcCC
Confidence            66666666666 36666666666666666543

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.35  E-value=9.5e-12  Score=102.92  Aligned_cols=99  Identities=16%  Similarity=0.262  Sum_probs=70.9

Q ss_pred             CCCCEeCCCcEECCCCEECCCCEECCCCeEe-eeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCc
Q 012817          349 HPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERV  427 (456)
Q Consensus       349 ~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~  427 (456)
                      ++++.|++++.|++++.|+++|.|++++.|. +++||++|.|++++.+.++.+ .+..+...+.+++++|++++.|++++
T Consensus         2 g~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~-~~~~~~~~~~~~~~~Ig~~~~Ig~~~   80 (119)
T cd03358           2 GDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLY-PRSKIYRKWELKGTTVKRGASIGANA   80 (119)
T ss_pred             CCCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCC-CccccccccccCCcEECCCcEECcCC
Confidence            4555666666666677777777777777774 478888999888888877544 33444556777788888888888888


Q ss_pred             Eec-CeEECCCCEECCCcEEcC
Q 012817          428 ALK-DCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       428 ~i~-~~~i~~~~~v~~~~~~~~  448 (456)
                      ++. +++|++++.|++++.+..
T Consensus        81 ~v~~~~~ig~~~~i~~~~~v~~  102 (119)
T cd03358          81 TILPGVTIGEYALVGAGAVVTK  102 (119)
T ss_pred             EEeCCcEECCCCEEccCCEEeC
Confidence            774 577888888877777654

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed

Probab=99.35  E-value=6.6e-12  Score=113.25  Aligned_cols=115  Identities=23%  Similarity=0.288  Sum_probs=84.9

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |+|.+||||||.|+||    . +.||+|+|++|+|||+|+++.+. .++++++|+++...  +...    ..     .+.
T Consensus         2 ~~~~~vILA~G~s~Rm----~-~~~K~ll~~~g~~ll~~~i~~l~-~~~~~i~vv~~~~~--~~~~----~~-----~~~   64 (193)
T PRK00317          2 PPITGVILAGGRSRRM----G-GVDKGLQELNGKPLIQHVIERLA-PQVDEIVINANRNL--ARYA----AF-----GLP   64 (193)
T ss_pred             CCceEEEEcCCCcccC----C-CCCCceeEECCEEHHHHHHHHHh-hhCCEEEEECCCCh--HHHH----hc-----CCc
Confidence            5789999999999999    3 47999999999999999999998 67999999887431  1111    11     122


Q ss_pred             EEEccC--CcChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHHHHhcCce
Q 012817           81 VATVPE--DVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAV  132 (456)
Q Consensus        81 ~~~~~~--~~gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~  132 (456)
                      ++....  ..|+..+++.+++....+.+++++||  ++....++.+++.+.+....
T Consensus        65 ~v~~~~~~~~g~~~~i~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~  120 (193)
T PRK00317         65 VIPDSLADFPGPLAGILAGLKQARTEWVLVVPCDTPFIPPDLVARLAQAAGKDDAD  120 (193)
T ss_pred             EEeCCCCCCCCCHHHHHHHHHhcCCCeEEEEcCCcCCCCHHHHHHHHHhhhcCCCc
Confidence            332221  26788999988887766779999999  45566788888876544333

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=99.35  E-value=7.3e-12  Score=100.72  Aligned_cols=80  Identities=25%  Similarity=0.465  Sum_probs=75.2

Q ss_pred             CEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecCeEECCCCEECCCcEEcCC
Q 012817          370 SQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGE  449 (456)
Q Consensus       370 ~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~~~~~~  449 (456)
                      +.|++++.|.+|+||++|.|+ ++.|.+|+|++++.||+++.|.+|+|++++.|+.++.+.+++|++++.|++++.+.+.
T Consensus         2 ~~i~~~~~i~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~~   80 (104)
T cd04651           2 PYIGRRGEVKNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGGD   80 (104)
T ss_pred             ceecCCCEEEeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEECCC
Confidence            567778888889999999999 9999999999999999999999999999999999999999999999999999999886


Q ss_pred             e
Q 012817          450 S  450 (456)
Q Consensus       450 ~  450 (456)
                      .
T Consensus        81 ~   81 (104)
T cd04651          81 P   81 (104)
T ss_pred             c
Confidence            4

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.34  E-value=5.3e-12  Score=129.64  Aligned_cols=107  Identities=14%  Similarity=0.277  Sum_probs=65.6

Q ss_pred             CceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-CeEECCCCEECCC--------------
Q 012817          345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDG--------------  409 (456)
Q Consensus       345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~--------------  409 (456)
                      .+.|++++.|++++.| .+++|+++|.|++++.|.+++||++|.||+++.|. +++|++++.|+++              
T Consensus       288 ~v~Ig~~~~I~~~~~i-~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i  366 (481)
T PRK14358        288 QTRVADGVTIGAYSVV-TDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARLDAGVKA  366 (481)
T ss_pred             CcEECCCCEECCCCEE-eeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCceecCCccc
Confidence            3334444444444443 23445555666665555556666666666666655 4555555555554              


Q ss_pred             ---cEEcCeEECCCCEECCCcEec--------CeEECCCCEECCCcEEcCCeee
Q 012817          410 ---CSIQGSVICSNAQLQERVALK--------DCQVGQGYVVSAGCEYKGESLA  452 (456)
Q Consensus       410 ---~~i~~~ii~~~~~I~~~~~i~--------~~~i~~~~~v~~~~~~~~~~~~  452 (456)
                         +.+++++|+++|.||+++++.        +++||+++.+++++.+.+....
T Consensus       367 g~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~I  420 (481)
T PRK14358        367 GHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVV  420 (481)
T ss_pred             CceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEE
Confidence               444668888999999998774        3688888888888776655543

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.34  E-value=5e-12  Score=129.48  Aligned_cols=104  Identities=13%  Similarity=0.302  Sum_probs=59.9

Q ss_pred             CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-CeEECCCCEECC--------------
Q 012817          344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGD--------------  408 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~--------------  408 (456)
                      +...|++++.|++++.|. ++.|+++|.|++++.|.+++||++|.||+++.|. +++|++++.||+              
T Consensus       282 ~~v~ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~~~  360 (456)
T PRK09451        282 GNVTLGNRVKIGAGCVLK-NCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARLGKGSK  360 (456)
T ss_pred             cCcEECCCCEECCCceEe-cCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceeeCCCCc
Confidence            344455555555555552 4555555566555555555555666655555555 444554444444              


Q ss_pred             ---CcEEcCeEECCCCEECCCcEec--------CeEECCCCEECCCcEEcC
Q 012817          409 ---GCSIQGSVICSNAQLQERVALK--------DCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       409 ---~~~i~~~ii~~~~~I~~~~~i~--------~~~i~~~~~v~~~~~~~~  448 (456)
                         .+.+++|.||++|.||+++++.        .++||+++.|+.++.+..
T Consensus       361 ~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~  411 (456)
T PRK09451        361 AGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVA  411 (456)
T ss_pred             cCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeC
Confidence               4445567788888888877652        356666666666665443

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=99.34  E-value=3.3e-11  Score=109.82  Aligned_cols=33  Identities=24%  Similarity=0.446  Sum_probs=13.2

Q ss_pred             eEECCCCEECCCcEec-CeEECCCCEECCCcEEc
Q 012817          415 SVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK  447 (456)
Q Consensus       415 ~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~  447 (456)
                      +.|+++|.|+.++++. +++|+++++|++++.+.
T Consensus       151 ~~Ig~~~~ig~~~~v~~~~~ig~~~~i~~~s~v~  184 (205)
T cd03352         151 TTIGDNVIIGGQVGIAGHLTIGDGVVIGAGSGVT  184 (205)
T ss_pred             cEECCCeEEcCCCEEeCCcEECCCCEEcCCCEEe
Confidence            3333333334333332 34444444444444433

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.34  E-value=1.7e-11  Score=112.87  Aligned_cols=32  Identities=16%  Similarity=0.334  Sum_probs=16.0

Q ss_pred             eEECCCCEECCCcEEc-CeEECCCCEECCCcEe
Q 012817          398 SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVAL  429 (456)
Q Consensus       398 s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i  429 (456)
                      ++|+++|.||.+|.|. +++|+++++||+|++|
T Consensus       174 ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI  206 (269)
T TIGR00965       174 TIIEDNCFIGARSEIVEGVIVEEGSVISMGVFI  206 (269)
T ss_pred             eEECCCCEECCCCEEcCCCEECCCCEEeCCCEE
Confidence            3455555555555553 4555555555555444

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=99.34  E-value=9.2e-12  Score=112.80  Aligned_cols=112  Identities=18%  Similarity=0.201  Sum_probs=84.7

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |++.+||||||.|+||      +.+|+|++++|+|||+|+++.+... +++++|+++..+   .......      ..+.
T Consensus         6 ~~~~~vILAgG~s~Rm------g~~K~ll~~~g~~ll~~~i~~l~~~-~~~ivvv~~~~~---~~~~~~~------~~~~   69 (200)
T PRK02726          6 NNLVALILAGGKSSRM------GQDKALLPWQGVPLLQRVARIAAAC-ADEVYIITPWPE---RYQSLLP------PGCH   69 (200)
T ss_pred             CCceEEEEcCCCcccC------CCCceeeEECCEeHHHHHHHHHHhh-CCEEEEECCCHH---HHHhhcc------CCCe
Confidence            5678999999999999      3589999999999999999999754 789998886432   2222111      1244


Q ss_pred             EEEccC-CcChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHHHHh
Q 012817           81 VATVPE-DVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRR  128 (456)
Q Consensus        81 ~~~~~~-~~gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~~~~  128 (456)
                      ++.... ..|+.++++.+++.+..+.+++++||  ++....++.+++....
T Consensus        70 ~i~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~  120 (200)
T PRK02726         70 WLREPPPSQGPLVAFAQGLPQIKTEWVLLLACDLPRLTVDVLQEWLQQLEN  120 (200)
T ss_pred             EecCCCCCCChHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence            443323 37899999999988876789999999  5666678888887644

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.34  E-value=3.8e-11  Score=108.84  Aligned_cols=98  Identities=23%  Similarity=0.405  Sum_probs=61.0

Q ss_pred             ceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-CeEECCCCEE
Q 012817          346 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQL  423 (456)
Q Consensus       346 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~~ii~~~~~I  423 (456)
                      ..+++.+.+++++.|++++.|+++|+|++++     .||++|.|++++.|. ++.|++++.|+.++.+. ++.|++++.|
T Consensus        88 ~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~-----~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i  162 (201)
T TIGR03570        88 TLIHPSAIVSPSASIGEGTVIMAGAVINPDV-----RIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFI  162 (201)
T ss_pred             EEecCCeEECCCCEECCCCEECCCCEECCCC-----EECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEE
Confidence            3444555555555555555555555554443     566666666666665 56667777777777775 6777777777


Q ss_pred             CCCcEec-CeEECCCCEECCCcEEcC
Q 012817          424 QERVALK-DCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       424 ~~~~~i~-~~~i~~~~~v~~~~~~~~  448 (456)
                      ++++++. ++.|+++++|++++.+..
T Consensus       163 g~~~~v~~~~~i~~~~~i~~~~~v~~  188 (201)
T TIGR03570       163 GAGATIIQGVTIGAGAIVGAGAVVTK  188 (201)
T ss_pred             CCCCEEeCCCEECCCCEECCCCEECC
Confidence            7777663 677777777777777654

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []

Probab=99.33  E-value=2.2e-11  Score=110.87  Aligned_cols=118  Identities=26%  Similarity=0.388  Sum_probs=85.5

Q ss_pred             eEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHC-CCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (456)
Q Consensus         4 ~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~-gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~   82 (456)
                      -+||+|||.|+||    +.+.||++++++|+|+|.|+++.+.+. .+++++|++.+.+ .+++++...+     ..+.++
T Consensus         2 ~aIilAaG~G~R~----g~~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~-~~~~~~~~~~-----~~v~iv   71 (221)
T PF01128_consen    2 AAIILAAGSGSRM----GSGIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPED-IDYVEELLSK-----KKVKIV   71 (221)
T ss_dssp             EEEEEESS-STCC----TSSS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGG-HHHHHHHHHH-----TTEEEE
T ss_pred             EEEEeCCccchhc----CcCCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchh-HHHHHHhhcC-----CCEEEe
Confidence            5899999999999    778999999999999999999999885 5899999997543 3455555544     234443


Q ss_pred             EccCCcChHHHHHHHHhcCCCC--cEEEEcCC--cccCCChhHHHHHHHh-cCceE
Q 012817           83 TVPEDVGTAGALRAIAHHLTAK--DVLVVSGD--LVSDVPPGAVTAAHRR-HDAVV  133 (456)
Q Consensus        83 ~~~~~~gt~~al~~~~~~l~~~--~~lv~~~D--~i~~~~l~~~l~~~~~-~~a~~  133 (456)
                        .......++++++++.+...  .+++..+=  ++....++++++..++ .++.+
T Consensus        72 --~GG~tR~~SV~ngL~~l~~~~d~VlIHDaaRPfv~~~~i~~~i~~~~~~~~aai  125 (221)
T PF01128_consen   72 --EGGATRQESVYNGLKALAEDCDIVLIHDAARPFVSPELIDRVIEAAREGHGAAI  125 (221)
T ss_dssp             --E--SSHHHHHHHHHHCHHCTSSEEEEEETTSTT--HHHHHHHHHHHHHTCSEEE
T ss_pred             --cCChhHHHHHHHHHHHHHcCCCEEEEEccccCCCCHHHHHHHHHHHHhhcCcEE
Confidence              57788899999999887543  45555444  6666679999998877 55443

The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.33  E-value=1.8e-11  Score=109.59  Aligned_cols=76  Identities=18%  Similarity=0.349  Sum_probs=60.3

Q ss_pred             EECCCCEECCCCeEe-----eeEECCCCEECCCcEEeCeEECCCCEECCCcEEc-CeEECCCCEECCCcEec-CeEECCC
Q 012817          365 MLGEGSQMGDKCSVK-----RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQG  437 (456)
Q Consensus       365 ~i~~~~~I~~~~~i~-----~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~  437 (456)
                      .|+++|.|+++|.|+     +++|+++|.||+++.+.+|+|+++|.||.++.+. +++|++++.|+++++|. +..+.++
T Consensus        51 ~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~~ip~~  130 (196)
T PRK13627         51 IVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEKR  130 (196)
T ss_pred             EECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCCCEECcCCccCCCcEECCCCEEcCCCEEeCCcCcCCC
Confidence            456677777777775     4789999999999999999999999999998885 78888888888888665 4555555


Q ss_pred             CEE
Q 012817          438 YVV  440 (456)
Q Consensus       438 ~~v  440 (456)
                      +++
T Consensus       131 ~~~  133 (196)
T PRK13627        131 QLL  133 (196)
T ss_pred             cEE
Confidence            443

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.33  E-value=2.2e-11  Score=97.05  Aligned_cols=86  Identities=19%  Similarity=0.218  Sum_probs=65.3

Q ss_pred             CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEee-eEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCE
Q 012817          344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQ  422 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~  422 (456)
                      ...++++.+.|++++.+.++++|+++|.|++++.|.+ +.||++|.||.  .|.+|+|++++.+++++.|++++|++++.
T Consensus        10 g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v~   87 (101)
T cd05635          10 GPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWCN   87 (101)
T ss_pred             CCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCCE
Confidence            4566777777777777777777888888877777764 78888888865  56788888888888888888888888888


Q ss_pred             ECCCcEecC
Q 012817          423 LQERVALKD  431 (456)
Q Consensus       423 I~~~~~i~~  431 (456)
                      |++++...+
T Consensus        88 ig~~~~~~~   96 (101)
T cd05635          88 LGAGTNNSD   96 (101)
T ss_pred             ECCCceecc
Confidence            887766543

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.32  E-value=1.6e-11  Score=93.55  Aligned_cols=77  Identities=25%  Similarity=0.489  Sum_probs=67.0

Q ss_pred             eCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEc-CeEECCCCEECC
Q 012817          348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQE  425 (456)
Q Consensus       348 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~  425 (456)
                      |++++.|++++.|. ++.|+++|.|++++.|.+++|++++.|++++.|.+++|++++.|++++.+. +++|++++.||+
T Consensus         2 ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v~~~~~ig~   79 (79)
T cd05787           2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIGD   79 (79)
T ss_pred             ccCCCEECCCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCCEEeCCcEeCc
Confidence            56777777778775 688999999999999999999999999999999999999999999998887 788888877763

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.32  E-value=5.9e-11  Score=106.90  Aligned_cols=98  Identities=22%  Similarity=0.434  Sum_probs=55.6

Q ss_pred             ceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-CeEECCCCEE
Q 012817          346 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQL  423 (456)
Q Consensus       346 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~~ii~~~~~I  423 (456)
                      ..+++.+.+.+++.++.++.|+++|+|++++     .||++|.|++++.|. ++.|+++|.|+.++.+. +++|+++|.|
T Consensus        85 ~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~-----~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i  159 (197)
T cd03360          85 TLIHPSAVVSPSAVIGEGCVIMAGAVINPDA-----RIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFI  159 (197)
T ss_pred             eEECCCeEECCCCEECCCCEEcCCCEECCCC-----EECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEE
Confidence            3444444444444555555555555554444     445555555555554 45556666666666664 5666666666


Q ss_pred             CCCcEec-CeEECCCCEECCCcEEcC
Q 012817          424 QERVALK-DCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       424 ~~~~~i~-~~~i~~~~~v~~~~~~~~  448 (456)
                      +.++.+. ++.|++++.|++++.+..
T Consensus       160 g~~~~v~~~~~ig~~~~v~~~~~v~~  185 (197)
T cd03360         160 GAGATIIQGVTIGAGAIIGAGAVVTK  185 (197)
T ss_pred             CCCCEEcCCCEECCCCEECCCCEEcC
Confidence            6666654 466677777776666554

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.32  E-value=2.6e-11  Score=111.71  Aligned_cols=70  Identities=24%  Similarity=0.373  Sum_probs=36.1

Q ss_pred             CCEECCCCeEee-eEECCCCEECCCcEEe-CeEEC--------CCCEECCCcEEc-CeEECCCCEECCCcEec-CeEECC
Q 012817          369 GSQMGDKCSVKR-SVIGRHCRIGSNVKVV-NSVVM--------NHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQ  436 (456)
Q Consensus       369 ~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~-~s~i~--------~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-~~~i~~  436 (456)
                      ++.||++|.|.. ++||++|.||++|.|. ++.|+        .+|+||++|+|+ +|.|.+++.||++++|. +++|++
T Consensus       129 ga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~  208 (269)
T TIGR00965       129 GAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQ  208 (269)
T ss_pred             CcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECC
Confidence            344555554443 4555555555555555 33343        345666666665 56666666665444443 344444


Q ss_pred             CC
Q 012817          437 GY  438 (456)
Q Consensus       437 ~~  438 (456)
                      ++
T Consensus       209 ~~  210 (269)
T TIGR00965       209 ST  210 (269)
T ss_pred             CC
Confidence            33

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.31  E-value=8.6e-12  Score=127.83  Aligned_cols=99  Identities=17%  Similarity=0.330  Sum_probs=56.5

Q ss_pred             CceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-CeEECCCCEECCCcEEcCeEECCCCEE
Q 012817          345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQGSVICSNAQL  423 (456)
Q Consensus       345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~~~ii~~~~~I  423 (456)
                      +..|++++.|++++.| .++.|+++|.|+++|.|.+++||++|.||+++.|. +++|+++|.||+++.+.+++|++++.+
T Consensus       287 ~~~ig~~~~I~~~~~i-~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i  365 (456)
T PRK14356        287 ASRIARGAVIHSHCWL-RDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAKA  365 (456)
T ss_pred             ceEECCCCEECCCeEE-EeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEecCCcEe
Confidence            3444444444444444 24556666666666666666666666666666665 566666666666666655555555555


Q ss_pred             CCCcEecCeEECCCCEECCCc
Q 012817          424 QERVALKDCQVGQGYVVSAGC  444 (456)
Q Consensus       424 ~~~~~i~~~~i~~~~~v~~~~  444 (456)
                      ++++.+.+++||+++.|++++
T Consensus       366 ~~~~~ig~~~ig~~~~Ig~~~  386 (456)
T PRK14356        366 NHLTYLGDAEIGAGANIGAGT  386 (456)
T ss_pred             cccccccCeEECCCCEECCCc
Confidence            555444444444444444443

>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial

Probab=99.31  E-value=1.6e-11  Score=109.99  Aligned_cols=117  Identities=22%  Similarity=0.318  Sum_probs=85.3

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~   82 (456)
                      +.+||||||.|+||    + ..||+|++++|+|||+|+++.+.. .+++++|++.+...  .   +...    ..++.++
T Consensus         1 ~~~iILAgG~s~Rm----g-~~~K~l~~i~g~pll~~~l~~l~~-~~~~ivv~~~~~~~--~---~~~~----~~~~~~i   65 (186)
T TIGR02665         1 ISGVILAGGRARRM----G-GRDKGLVELGGKPLIEHVLARLRP-QVSDLAISANRNPE--R---YAQA----GFGLPVV   65 (186)
T ss_pred             CeEEEEcCCccccC----C-CCCCceeEECCEEHHHHHHHHHHh-hCCEEEEEcCCCHH--H---Hhhc----cCCCcEE
Confidence            35899999999999    3 259999999999999999999975 58999888864321  1   1111    1123333


Q ss_pred             Ec--cCCcChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHHHHhcCceEE
Q 012817           83 TV--PEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVT  134 (456)
Q Consensus        83 ~~--~~~~gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t  134 (456)
                      ..  +...|+.++++.+++.+..+.++++.||  ++....++.+++.+.+.++.++
T Consensus        66 ~~~~~~~~g~~~si~~al~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~  121 (186)
T TIGR02665        66 PDALADFPGPLAGILAGLRWAGTDWVLTVPCDTPFLPEDLVARLAAALEASDADIA  121 (186)
T ss_pred             ecCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCcCCHHHHHHHHHHhhccCCcEE
Confidence            32  2347999999999988876789999999  4556668888887665444443

In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=99.30  E-value=4.4e-11  Score=99.62  Aligned_cols=73  Identities=19%  Similarity=0.348  Sum_probs=48.4

Q ss_pred             CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe----e-eEECCCCEECCCcEEeCeEECCC----CEECCCcEEc-
Q 012817          344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----R-SVIGRHCRIGSNVKVVNSVVMNH----VTIGDGCSIQ-  413 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~----~-s~Ig~~~~ig~~~~i~~s~i~~~----~~ig~~~~i~-  413 (456)
                      +.+.+.+++.|++++.|.+++++..++.|+++|.|.    . ++|+++|.||+++.|. +.+..+    +.||++|+|+ 
T Consensus         6 ~~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~-~~l~G~~~~pV~IG~~~~IG~   84 (147)
T cd04649           6 DADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEGRISSGVIVGKGSDVGGGASIM-GTLSGGGNNVISIGKRCLLGA   84 (147)
T ss_pred             CCCEECCCCEECCCcEECCCCEEccCCEECCCeEECCcccCCEEECCCCEECCCCEEE-EECCCCcccCEEECCCCEECC
Confidence            566677777777777777777777777777777665    3 6777778777777776 444444    5555555544 


Q ss_pred             CeEE
Q 012817          414 GSVI  417 (456)
Q Consensus       414 ~~ii  417 (456)
                      +|.|
T Consensus        85 ga~I   88 (147)
T cd04649          85 NSGI   88 (147)
T ss_pred             CCEE
Confidence            4444

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.30  E-value=4.2e-11  Score=103.67  Aligned_cols=100  Identities=15%  Similarity=0.236  Sum_probs=80.7

Q ss_pred             CCceeCCCCEeCCCcEECC---CCEECCCCEECCCCeEee-----eEECCCCEECCCcEEeCeEECCCCEECCCcEEc-C
Q 012817          344 QNNIIHPSAELGSKTTVGP---HCMLGEGSQMGDKCSVKR-----SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-G  414 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~---~~~i~~~~~I~~~~~i~~-----s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~  414 (456)
                      ++..+++++.|++++.|.+   ++.||++|.|+++|.|..     ++||++|.|+.+|.+.+++|++++.||.++.+. +
T Consensus        16 g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~v~~~   95 (153)
T cd04645          16 GDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMGAIILDG   95 (153)
T ss_pred             EeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEECCCCEEcCC
Confidence            3455566666666666644   357888999999998886     599999999999999999999999999999997 8


Q ss_pred             eEECCCCEECCCcEec-CeEECCCCEE-CCC
Q 012817          415 SVICSNAQLQERVALK-DCQVGQGYVV-SAG  443 (456)
Q Consensus       415 ~ii~~~~~I~~~~~i~-~~~i~~~~~v-~~~  443 (456)
                      ++|++++.|++++.+. ++.+++++++ +..
T Consensus        96 ~~ig~~~~ig~~~~v~~~~~i~~~~~~~g~~  126 (153)
T cd04645          96 AVIGKGSIVAAGSLVPPGKVIPPGSLVAGSP  126 (153)
T ss_pred             CEECCCCEECCCCEECCCCEeCCCCEEeCCc
Confidence            9999999999888774 5677777776 444

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]

Probab=99.30  E-value=2.1e-11  Score=110.27  Aligned_cols=124  Identities=22%  Similarity=0.253  Sum_probs=90.2

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i   79 (456)
                      |++.+||||||.|+||    +...||++++++|+||++|+|+.+.... +++|+|+++..+. .++.++..  +...  .
T Consensus         3 ~~~~~vilAaG~G~R~----~~~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~-~~~~~~~~--~~~~--~   73 (230)
T COG1211           3 MMVSAVILAAGFGSRM----GNPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDD-PYFEKLPK--LSAD--K   73 (230)
T ss_pred             ceEEEEEEcCcccccc----CCCCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhh-HHHHHhhh--hccC--C
Confidence            4678999999999999    7789999999999999999999998765 7999999975432 35555442  1112  2


Q ss_pred             EEEEccCCcChHHHHHHHHhcCC---CCcEEEEcCC--cccCCChhHHHHHHHhcCceE
Q 012817           80 EVATVPEDVGTAGALRAIAHHLT---AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVV  133 (456)
Q Consensus        80 ~~~~~~~~~gt~~al~~~~~~l~---~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~  133 (456)
                      ++....+.....++++++++.+.   ++.||+..+-  ++....++++++.....++.+
T Consensus        74 ~v~~v~GG~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~~~~aai  132 (230)
T COG1211          74 RVEVVKGGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELADKYGAAI  132 (230)
T ss_pred             eEEEecCCccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhhccCCcEE
Confidence            33334677888999999998886   2335555554  666667888885544444443

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.29  E-value=5.9e-11  Score=103.57  Aligned_cols=99  Identities=23%  Similarity=0.320  Sum_probs=64.9

Q ss_pred             CCCceeCCCCEeCCC---cEECCCCEECCCCEECCCCeE-------eeeEECCCCEECCCcEEeCeEECCCCEECCCcEE
Q 012817          343 AQNNIIHPSAELGSK---TTVGPHCMLGEGSQMGDKCSV-------KRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI  412 (456)
Q Consensus       343 ~~~~~i~~~~~i~~~---~~i~~~~~i~~~~~I~~~~~i-------~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i  412 (456)
                      ++.+.|+|++.|.+.   +.||++|.|+++|.|.+.+.+       .+++||+++.|++++.+.+++|++++.||+++.|
T Consensus        25 g~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~~~I  104 (161)
T cd03359          25 NGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGKNCVI  104 (161)
T ss_pred             CCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEECCCCEE
Confidence            344555555544433   244444444444444332211       1357999999999999999999999999998888


Q ss_pred             c-CeEECCCCEECCCcEec-CeEECCCCEEC
Q 012817          413 Q-GSVICSNAQLQERVALK-DCQVGQGYVVS  441 (456)
Q Consensus       413 ~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v~  441 (456)
                      + +++|++++.|++++++. ++.|+++++++
T Consensus       105 g~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~  135 (161)
T cd03359         105 GRRCIIKDCVKILDGTVVPPDTVIPPYSVVS  135 (161)
T ss_pred             cCCCEECCCcEECCCCEECCCCEeCCCCEEe
Confidence            6 78888888888776663 56666666664

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.28  E-value=2.6e-11  Score=123.35  Aligned_cols=29  Identities=7%  Similarity=0.005  Sum_probs=20.8

Q ss_pred             eeeEEEEecCcchhhcccCHHHHHHHhHhh
Q 012817          300 HKCCVYIASNSKYCVRLNSIQAFMDINRDV  329 (456)
Q Consensus       300 ~~~~~yi~~~~~~~~~i~~~~~y~~~~~~~  329 (456)
                      .++..|..+ ..+|.+++++++|..++..+
T Consensus       205 ~~v~~~~~~-~~~w~dI~t~~dl~~a~~~l  233 (430)
T PRK14359        205 ETIKAVFVD-EENFMGVNSKFELAKAEEIM  233 (430)
T ss_pred             CeEEEEEcC-CCEEeCCCCHHHHHHHHHHH
Confidence            445555332 46899999999999887544

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.28  E-value=1.6e-11  Score=125.74  Aligned_cols=68  Identities=19%  Similarity=0.364  Sum_probs=31.0

Q ss_pred             CceeCCCCEeCCCcEECCCCEECCCCEECCCCeEee----------------eEECCCCEECCCcEEe-CeEECCCCEEC
Q 012817          345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR----------------SVIGRHCRIGSNVKVV-NSVVMNHVTIG  407 (456)
Q Consensus       345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~----------------s~Ig~~~~ig~~~~i~-~s~i~~~~~ig  407 (456)
                      ...+++++.|++++.|++++.||++|.|++++.|.+                ++||++|.||+++.|. +++|+++|.||
T Consensus       262 ~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig  341 (450)
T PRK14360        262 TVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIG  341 (450)
T ss_pred             CEEECCCCEECCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEEC
Confidence            333444444444444444444444444444444443                3444444444444444 34444444444


Q ss_pred             CCcEE
Q 012817          408 DGCSI  412 (456)
Q Consensus       408 ~~~~i  412 (456)
                      +++.+
T Consensus       342 ~~~~i  346 (450)
T PRK14360        342 NFVEI  346 (450)
T ss_pred             CCEEE
Confidence            44444

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.28  E-value=3.4e-11  Score=110.74  Aligned_cols=105  Identities=19%  Similarity=0.282  Sum_probs=80.3

Q ss_pred             cCCCcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-eeEECCCCEECCCcEEeC---------eEECCCCE
Q 012817          336 LSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVVN---------SVVMNHVT  405 (456)
Q Consensus       336 ~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i~~---------s~i~~~~~  405 (456)
                      +.....+.+++.|++++.|++++.|++++.||++|.|++++.|. +++||++|.||.++.|.+         ++|+++|.
T Consensus        89 I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~  168 (231)
T TIGR03532        89 IEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVL  168 (231)
T ss_pred             ECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcE
Confidence            33333444567777777777777777788888888888888886 689999999999999974         77888888


Q ss_pred             ECCCcEEc-CeEECCCCEECCCcEecCeEECCCCEEC
Q 012817          406 IGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGYVVS  441 (456)
Q Consensus       406 ig~~~~i~-~~ii~~~~~I~~~~~i~~~~i~~~~~v~  441 (456)
                      ||.++.|. ++.|++++.|++++++.+. +.+++++.
T Consensus       169 IG~gsvI~~g~~Ig~~~~IgagsvV~~d-i~~~~vv~  204 (231)
T TIGR03532       169 IGANAVILEGVRVGKGAVVAAGAIVTED-VPPNTVVA  204 (231)
T ss_pred             ECCCCEEcCCCEECCCCEECCCCEEccc-cCCCcEEE
Confidence            88888884 8888888888888877653 45555543

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>TIGR03584 PseF pseudaminic acid CMP-transferase

Probab=99.27  E-value=1.2e-10  Score=107.09  Aligned_cols=121  Identities=15%  Similarity=0.214  Sum_probs=87.5

Q ss_pred             EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccceEEEE
Q 012817            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT   83 (456)
Q Consensus         5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~   83 (456)
                      |||||+|.|+||       ..|.++|++|+|||+|+++.+.+++ +++|+|.+...    .+.+...+.   ...+.+..
T Consensus         2 aiIpArG~Skr~-------~~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~~----~i~~~a~~~---g~~v~~~r   67 (222)
T TIGR03584         2 AIIPARGGSKRI-------PRKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDDE----EIAEVAKSY---GASVPFLR   67 (222)
T ss_pred             EEEccCCCCCCC-------CCccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCCH----HHHHHHHHc---CCEeEEeC
Confidence            799999999999       2699999999999999999999887 67787766543    333333221   11121211


Q ss_pred             ----ccCCcChHHHHHHHHhcCC----CCcEEEEcCC--cccCCChhHHHHHHHhcCceEEEEEee
Q 012817           84 ----VPEDVGTAGALRAIAHHLT----AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICS  139 (456)
Q Consensus        84 ----~~~~~gt~~al~~~~~~l~----~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~~~~~  139 (456)
                          .....++.++++.+++.+.    .+.++++.+|  ++...+++.+++.+.+.+++..+.+.+
T Consensus        68 ~~~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~  133 (222)
T TIGR03584        68 PKELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTS  133 (222)
T ss_pred             hHHHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeec
Confidence                1234678899988877652    3559999999  666778999999998877776665554

The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.27  E-value=5.2e-11  Score=110.85  Aligned_cols=76  Identities=16%  Similarity=0.272  Sum_probs=40.9

Q ss_pred             CCCCEECCCCEECCCCeEee-eEECCCCEECCCcEEe---------CeEECCCCEECCCcEEc-CeEECCCCEECCCcEe
Q 012817          361 GPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV---------NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVAL  429 (456)
Q Consensus       361 ~~~~~i~~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~---------~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i  429 (456)
                      +.++.|+++|.|+.++.|++ +.||++|.|+.++.|.         +++|+++|.||.+|.|. +++|+++++|+++++|
T Consensus       130 ~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV  209 (272)
T PRK11830        130 NIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFL  209 (272)
T ss_pred             CCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEE
Confidence            33444555555555544443 3555555555555544         25566666666666663 6666666666666555


Q ss_pred             c-CeEECC
Q 012817          430 K-DCQVGQ  436 (456)
Q Consensus       430 ~-~~~i~~  436 (456)
                      . ++.|++
T Consensus       210 ~~gt~I~~  217 (272)
T PRK11830        210 GQSTKIYD  217 (272)
T ss_pred             cCCeEECc
Confidence            3 344443

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.26  E-value=1.2e-10  Score=92.88  Aligned_cols=85  Identities=16%  Similarity=0.235  Sum_probs=71.2

Q ss_pred             CCCEECCCCEECCCCeEe-eeEECCCCEECCCcEEe-CeEECCCCEECCCcEEcCeEECCCCEECCCcEecCeEECCCCE
Q 012817          362 PHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYV  439 (456)
Q Consensus       362 ~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~~i~~~~~  439 (456)
                      +++.+++++.|++++.+. ++.||++|.|++++.|. +++|+++|.||.  .+.+|+|++++.|+++++|.+++||+++.
T Consensus        10 g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v~   87 (101)
T cd05635          10 GPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWCN   87 (101)
T ss_pred             CCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCCE
Confidence            355666666666666664 36899999999999988 688999999975  67899999999999999999999999999


Q ss_pred             ECCCcEEcC
Q 012817          440 VSAGCEYKG  448 (456)
Q Consensus       440 v~~~~~~~~  448 (456)
                      |++++...+
T Consensus        88 ig~~~~~~~   96 (101)
T cd05635          88 LGAGTNNSD   96 (101)
T ss_pred             ECCCceecc
Confidence            999988665

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=99.26  E-value=1.8e-10  Score=104.90  Aligned_cols=68  Identities=19%  Similarity=0.370  Sum_probs=33.0

Q ss_pred             eEECCCCEECCCcEEe-----CeEECCCCEECCCcEEc-CeEECCCCEECCCcEe-cCeEECCCCEECCCcEEcC
Q 012817          381 SVIGRHCRIGSNVKVV-----NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       381 s~Ig~~~~ig~~~~i~-----~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~~  448 (456)
                      +.|++++.|+.++.+.     ++.|++++.++.++.|. ++.|++++.|+.++.+ .++.|++++.|++++.+..
T Consensus        93 v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v~~  167 (205)
T cd03352          93 VIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAG  167 (205)
T ss_pred             EEECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCCCEEeC
Confidence            3444455555544443     23444455555544443 4555555555555444 2455555555555554443

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=1.8e-11  Score=115.30  Aligned_cols=96  Identities=15%  Similarity=0.357  Sum_probs=82.8

Q ss_pred             ccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCC
Q 012817          341 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSN  420 (456)
Q Consensus       341 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~  420 (456)
                      ..+..++++|++.|++++.| ..++||.+|.||+.++|.+|+|.+|+.||++|.|++|+|+.++.||++|.+.||+|+.+
T Consensus       330 l~g~d~iv~~~t~i~~~s~i-k~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~nC~Ig~~  408 (433)
T KOG1462|consen  330 LVGADSIVGDNTQIGENSNI-KRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLKNCIIGPG  408 (433)
T ss_pred             ccchhhccCCCceeccccee-eeeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccceecCCCeeeeeEecCC
Confidence            34567777888888877777 67889999999999999999999999999999999999999999999999999999999


Q ss_pred             CEECCCcEecCeEECCC
Q 012817          421 AQLQERVALKDCQVGQG  437 (456)
Q Consensus       421 ~~I~~~~~i~~~~i~~~  437 (456)
                      =+|.++.+..+.++-++
T Consensus       409 yvVeak~~~~~ev~~~~  425 (433)
T KOG1462|consen  409 YVVEAKGKHGGEVLVSN  425 (433)
T ss_pred             cEEcccccccccEeecc
Confidence            99997777666555443

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.26  E-value=8.1e-11  Score=106.03  Aligned_cols=84  Identities=26%  Similarity=0.510  Sum_probs=51.8

Q ss_pred             ccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-eeEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-CeEE
Q 012817          341 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVI  417 (456)
Q Consensus       341 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~~ii  417 (456)
                      ++++...+.+.+.++.++.|++++.|++++.||++|.|. +++|+++|.||++|.|+ ++++.++++||++|+|+ +|.|
T Consensus        86 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v  165 (197)
T cd03360          86 LIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATI  165 (197)
T ss_pred             EECCCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEE
Confidence            334555666666666666666666666666666666664 46666666666666665 55555566666665554 5555


Q ss_pred             CCCCEEC
Q 012817          418 CSNAQLQ  424 (456)
Q Consensus       418 ~~~~~I~  424 (456)
                      .+++.|+
T Consensus       166 ~~~~~ig  172 (197)
T cd03360         166 IQGVTIG  172 (197)
T ss_pred             cCCCEEC
Confidence            5555555

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.26  E-value=1.3e-10  Score=101.42  Aligned_cols=66  Identities=18%  Similarity=0.343  Sum_probs=44.8

Q ss_pred             eEECCCCEECCCcEEeC-------------eEECCCCEECCCcEEcCeEECCCCEECCCcEec-CeEECCCCEECCCcEE
Q 012817          381 SVIGRHCRIGSNVKVVN-------------SVVMNHVTIGDGCSIQGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEY  446 (456)
Q Consensus       381 s~Ig~~~~ig~~~~i~~-------------s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~  446 (456)
                      ..||++|.|+++|+|..             ++|++++.|++++.+.+++|++++.|+++++|. +++|++++.|++++.+
T Consensus        43 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V  122 (161)
T cd03359          43 VSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVV  122 (161)
T ss_pred             eEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEECCCCEEcCCCEECCCcEECCCCEE
Confidence            56777777777777753             368888888888888777777777777777663 4555555555444444

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.25  E-value=4.9e-11  Score=110.99  Aligned_cols=32  Identities=22%  Similarity=0.299  Sum_probs=14.5

Q ss_pred             eEECCCCEECCCcEe-cCeEECCCCEECCCcEE
Q 012817          415 SVICSNAQLQERVAL-KDCQVGQGYVVSAGCEY  446 (456)
Q Consensus       415 ~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~  446 (456)
                      ++|+++|.||.+++| .+++||++++|++++.+
T Consensus       177 viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV  209 (272)
T PRK11830        177 VIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFL  209 (272)
T ss_pred             eEEcCCCEECCCCEEcCCCEECCCCEEcCCCEE
Confidence            444444444444444 24444444444444443

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.25  E-value=2.7e-11  Score=123.88  Aligned_cols=104  Identities=21%  Similarity=0.245  Sum_probs=56.1

Q ss_pred             cCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEE---------
Q 012817          342 SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI---------  412 (456)
Q Consensus       342 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i---------  412 (456)
                      +++++.|++++.|++.+.|++++.||++|.|+++|.|.+|+||++|.|. .+.+.+|+|++++.||+++.|         
T Consensus       252 i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~-~~~v~~sii~~~~~ig~~~~i~~~~~ig~~  330 (448)
T PRK14357        252 IHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKII-RSECEKSVIEDDVSVGPFSRLREGTVLKKS  330 (448)
T ss_pred             EccceEECCCcEEcCCcEEEeeeEECCCcEECCCceecccEECCCCEEe-eeEEEEEEEeCCcEECCCcEECCcccccCC
Confidence            3444555555555555555555566666666666666555666655553 234444555555555555444         


Q ss_pred             ---------cCeEECCCCEECCCcEecCeEECCCCEECCCcEE
Q 012817          413 ---------QGSVICSNAQLQERVALKDCQVGQGYVVSAGCEY  446 (456)
Q Consensus       413 ---------~~~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~~~  446 (456)
                               .+++|++++.+++.+++.+++||+++.|++++.+
T Consensus       331 ~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~  373 (448)
T PRK14357        331 VKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTIT  373 (448)
T ss_pred             cEecCceeeeccEEcCCcCccccccccCcEECCCcEECCCccc
Confidence                     4444444444444444455666777777666544

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.25  E-value=9.2e-11  Score=106.32  Aligned_cols=88  Identities=24%  Similarity=0.452  Sum_probs=44.8

Q ss_pred             CCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-eeEECCCCEECCCcEEe-C------eEECCCCEECCCcEEc-
Q 012817          343 AQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-N------SVVMNHVTIGDGCSIQ-  413 (456)
Q Consensus       343 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i~-~------s~i~~~~~ig~~~~i~-  413 (456)
                      .+.+.+++.+.|++++.|++++.|++++.|+++|.|. ++.|+++|.||+++.|+ +      +.|+++|.||.++.+. 
T Consensus        91 ~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~  170 (201)
T TIGR03570        91 HPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQ  170 (201)
T ss_pred             cCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeC
Confidence            3445555555555555555555555555555555554 34555555555555544 3      4444444444444443 


Q ss_pred             CeEECCCCEECCCcEec
Q 012817          414 GSVICSNAQLQERVALK  430 (456)
Q Consensus       414 ~~ii~~~~~I~~~~~i~  430 (456)
                      ++.|++++.|++++++.
T Consensus       171 ~~~i~~~~~i~~~~~v~  187 (201)
T TIGR03570       171 GVTIGAGAIVGAGAVVT  187 (201)
T ss_pred             CCEECCCCEECCCCEEC
Confidence            44444444444444443

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.23  E-value=6.7e-11  Score=121.22  Aligned_cols=108  Identities=14%  Similarity=0.234  Sum_probs=73.3

Q ss_pred             CCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-CeEECCCCEECCCcEE---------
Q 012817          343 AQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSI---------  412 (456)
Q Consensus       343 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i---------  412 (456)
                      .+++.|++++.|++++.|+ ++.||++|.|+.++.|.+++|+++|.||+++.|. ++.|++++.||+++.+         
T Consensus       284 ~~~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~~ig~~~  362 (459)
T PRK14355        284 SGDTRIGEGCTIEQGVVIK-GCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIVMGEGS  362 (459)
T ss_pred             eCCCEECCCCEECCCCEEe-CCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCCEECCCc
Confidence            3444555555555555553 5667777888888888888999999999888887 7778888877776543         


Q ss_pred             --------cCeEECCCCEECCCcEec--------CeEECCCCEECCCcEEcCCee
Q 012817          413 --------QGSVICSNAQLQERVALK--------DCQVGQGYVVSAGCEYKGESL  451 (456)
Q Consensus       413 --------~~~ii~~~~~I~~~~~i~--------~~~i~~~~~v~~~~~~~~~~~  451 (456)
                              ++++|+++|.||+++++.        +++||+++.|+.++.+.....
T Consensus       363 ~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~  417 (459)
T PRK14355        363 KASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVT  417 (459)
T ss_pred             eeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcE
Confidence                    346777778888776542        356677777666665554433

>COG2068 Uncharacterized MobA-related protein [General function prediction only]

Probab=99.23  E-value=1.2e-10  Score=101.84  Aligned_cols=116  Identities=28%  Similarity=0.362  Sum_probs=94.1

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~   81 (456)
                      +.-+||||+|+|+||      +.+|.|+|+.|+||++++++.+.+++++++++++++.. .+.......     ..++.+
T Consensus         5 ~v~~VvLAAGrssRm------G~~KlLap~~g~plv~~~~~~a~~a~~~~vivV~g~~~-~~~~~a~~~-----~~~~~~   72 (199)
T COG2068           5 TVAAVVLAAGRSSRM------GQPKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRV-AEAVEALLA-----QLGVTV   72 (199)
T ss_pred             ceEEEEEcccccccC------CCcceecccCCCcHHHHHHHHHHhcCCCeEEEEeCcch-hhHHHhhhc-----cCCeEE
Confidence            467899999999999      48999999999999999999999999999999998652 222332222     234667


Q ss_pred             EEccCC-cChHHHHHHHHhcCCCC--cEEEEcCC--cccCCChhHHHHHHHhc
Q 012817           82 ATVPED-VGTAGALRAIAHHLTAK--DVLVVSGD--LVSDVPPGAVTAAHRRH  129 (456)
Q Consensus        82 ~~~~~~-~gt~~al~~~~~~l~~~--~~lv~~~D--~i~~~~l~~~l~~~~~~  129 (456)
                      +..++. .|.+.+++.+......+  .++++.||  .+...++..+++.+...
T Consensus        73 v~npd~~~Gls~Sl~ag~~a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~  125 (199)
T COG2068          73 VVNPDYAQGLSTSLKAGLRAADAEGDGVVLMLGDMPQVTPATVRRLIAAFRAR  125 (199)
T ss_pred             EeCcchhhhHhHHHHHHHHhcccCCCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence            766664 79999999998887644  69999999  57888999999988877

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.22  E-value=1.1e-10  Score=120.33  Aligned_cols=69  Identities=20%  Similarity=0.272  Sum_probs=41.8

Q ss_pred             eeEECCCCEECCCcEEeCeEECCCCEECCCcEEc--------CeEECCCCEECCCcEec-CeEECCCCEECCCcEEcC
Q 012817          380 RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ--------GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       380 ~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~--------~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~  448 (456)
                      +++|+.++.|+..+.+++|+|+++|.||.++.+.        +++||++|.||.++.|. ++.||++++|++|+.+..
T Consensus       357 ~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~igags~v~~  434 (482)
T PRK14352        357 NATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYTGAGTVIRE  434 (482)
T ss_pred             ccEECCCcEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEECCCCEEcC
Confidence            3444455555554455556666666666666553        26677777777776553 567777777777765543

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=99.22  E-value=2.6e-10  Score=94.96  Aligned_cols=96  Identities=16%  Similarity=0.118  Sum_probs=61.3

Q ss_pred             eeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEEC----CCcEEe-CeEECCCCEECCCcEEc-C----eE
Q 012817          347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIG----SNVKVV-NSVVMNHVTIGDGCSIQ-G----SV  416 (456)
Q Consensus       347 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig----~~~~i~-~s~i~~~~~ig~~~~i~-~----~i  416 (456)
                      .|.|.+.+...+.|+++++|.+++.+..++     .||++|.|.    .++.|+ +|.|+++|.|.  +.+. +    +.
T Consensus         3 ~i~~~~~V~~~a~IG~GtvI~~gavV~~~a-----~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~--~~l~G~~~~pV~   75 (147)
T cd04649           3 RIADADRVRLGAYLAEGTTVMHEGFVNFNA-----GTLGNCMVEGRISSGVIVGKGSDVGGGASIM--GTLSGGGNNVIS   75 (147)
T ss_pred             EecCCCEECCCCEECCCcEECCCCEEccCC-----EECCCeEECCcccCCEEECCCCEECCCCEEE--EECCCCcccCEE
Confidence            345666666666666666666666665555     666666665    444444 44444444444  2232 4    78


Q ss_pred             ECCCCEECCCcEecCeEECCCCEECCCcEEcCCe
Q 012817          417 ICSNAQLQERVALKDCQVGQGYVVSAGCEYKGES  450 (456)
Q Consensus       417 i~~~~~I~~~~~i~~~~i~~~~~v~~~~~~~~~~  450 (456)
                      |+++|.||.++.| ++.||++++|++|+.+...+
T Consensus        76 IG~~~~IG~ga~I-gv~IG~~~vIGaGsvV~k~t  108 (147)
T cd04649          76 IGKRCLLGANSGI-GISLGDNCIVEAGLYVTAGT  108 (147)
T ss_pred             ECCCCEECCCCEE-eEEECCCCEECCCCEEeCCe
Confidence            8999999999988 78888888888887654433

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.18  E-value=1.2e-10  Score=119.50  Aligned_cols=64  Identities=23%  Similarity=0.388  Sum_probs=34.3

Q ss_pred             eeEECCCCEECCCcEEe-CeEECCCCEECCCcEEcCeEECCCCEECCCcEecCeEECCCCEECCC
Q 012817          380 RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAG  443 (456)
Q Consensus       380 ~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~~i~~~~~v~~~  443 (456)
                      +++||++|.||+++.|. +++|+++|+||.++.|.+++|++++.|++.+.+.+++||+++.|+++
T Consensus       316 ~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~  380 (458)
T PRK14354        316 ESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCG  380 (458)
T ss_pred             CCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCceEEcCc
Confidence            45666666666666665 56666666666666555555555554444444444444444443333

>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]

Probab=99.18  E-value=1.1e-10  Score=104.17  Aligned_cols=111  Identities=23%  Similarity=0.362  Sum_probs=80.9

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |+|.+||||||+|+||       .+|+|++++||||++|+++.|.... +.++|..... .. .   +..      ....
T Consensus         3 ~~~~~vILAGG~srRm-------~dK~l~~~~g~~lie~v~~~L~~~~-~~vvi~~~~~-~~-~---~~~------~g~~   63 (192)
T COG0746           3 TPMTGVILAGGKSRRM-------RDKALLPLNGRPLIEHVIDRLRPQV-DVVVISANRN-QG-R---YAE------FGLP   63 (192)
T ss_pred             CCceEEEecCCccccc-------cccccceeCCeEHHHHHHHHhcccC-CEEEEeCCCc-hh-h---hhc------cCCc
Confidence            4689999999999999       4799999999999999999998774 4455554422 11 1   111      1234


Q ss_pred             EEEccCCc-ChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHHHHhcC
Q 012817           81 VATVPEDV-GTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHD  130 (456)
Q Consensus        81 ~~~~~~~~-gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~  130 (456)
                      ++...... |+..+++.++++...+.+++++||  ++....++.++....+.+
T Consensus        64 vv~D~~~~~GPL~Gi~~al~~~~~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~  116 (192)
T COG0746          64 VVPDELPGFGPLAGILAALRHFGTEWVLVLPCDMPFIPPELVERLLSAFKQTG  116 (192)
T ss_pred             eeecCCCCCCCHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence            44333333 999999999999888899999999  455556777777665544

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=99.14  E-value=3.2e-10  Score=112.16  Aligned_cols=121  Identities=20%  Similarity=0.284  Sum_probs=87.2

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~   81 (456)
                      ++.+||||||.|+||    . +.||+|+|++|+|||+|+++.+.. .+++++|++....  +.+..++.     ...+..
T Consensus         5 ~i~~VILAgG~s~Rm----g-g~~K~ll~i~Gkpll~~~i~~l~~-~~~~iivvv~~~~--~~~~~~~~-----~~~~i~   71 (366)
T PRK14489          5 QIAGVILAGGLSRRM----N-GRDKALILLGGKPLIERVVDRLRP-QFARIHLNINRDP--ARYQDLFP-----GLPVYP   71 (366)
T ss_pred             CceEEEEcCCcccCC----C-CCCCceeEECCeeHHHHHHHHHHh-hCCEEEEEcCCCH--HHHHhhcc-----CCcEEe
Confidence            367999999999999    3 479999999999999999999975 4899998776432  12322211     111111


Q ss_pred             EEccCCcChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHHHHhcCceEEE
Q 012817           82 ATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA  135 (456)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~  135 (456)
                      ...+...|+..+++.+++.+..+.+++++||  ++....++.+++.+...++++.+
T Consensus        72 d~~~g~~G~~~si~~gl~~~~~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~v~  127 (366)
T PRK14489         72 DILPGFQGPLSGILAGLEHADSEYLFVVACDTPFLPENLVKRLSKALAIEGADIAV  127 (366)
T ss_pred             cCCCCCCChHHHHHHHHHhcCCCcEEEeeCCcCCCCHHHHHHHHHHhhccCCeEEE
Confidence            1112236888999999988866779999999  46666788888877666666544

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.12  E-value=6.6e-10  Score=100.40  Aligned_cols=95  Identities=23%  Similarity=0.388  Sum_probs=65.9

Q ss_pred             CceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCe-E------------------------
Q 012817          345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNS-V------------------------  399 (456)
Q Consensus       345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s-~------------------------  399 (456)
                      +..|++++.|++++.|. ++.||++|.|+.++.|.++.||++|.|++++.|..+ .                        
T Consensus        19 ~~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~~~~~~~~~~~~~   97 (204)
T TIGR03308        19 ESKLGRYTEIGERTRLR-EVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFTYRAAMYFDDASDD   97 (204)
T ss_pred             ccEeCCCcEECCCcEEe-CCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCccccccccccccccccccccc
Confidence            34556666666666663 677888888888888888999999999999998732 1                        


Q ss_pred             -------ECCCCEECCCcEEcCeEECCCCEECCCcEe-cCeEECCCCEECCCcE
Q 012817          400 -------VMNHVTIGDGCSIQGSVICSNAQLQERVAL-KDCQVGQGYVVSAGCE  445 (456)
Q Consensus       400 -------i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~  445 (456)
                             ...++.||++++|     |.++.|.+++.| .+++|+++++|..+..
T Consensus        98 ~~~~~~~~~~~~~Ig~~~~I-----g~~~~I~~gv~Ig~~~~I~~gs~v~~~i~  146 (204)
T TIGR03308        98 ADFFAWRRAKRVTIGHDVWI-----GHGAVILPGVTIGNGAVIAAGAVVTKDVA  146 (204)
T ss_pred             ccccccccCCCeEECCCCEE-----CCCCEECCCCEECCCCEECCCCEECCCCC
Confidence                   1134455555555     455555555554 5999999999876643

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.12  E-value=6.3e-10  Score=91.95  Aligned_cols=48  Identities=19%  Similarity=0.183  Sum_probs=36.4

Q ss_pred             CcEEeCeEECCCCEECCCcEEc-CeEECCCCEECCCcEecCeEECCCCEE
Q 012817          392 NVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGYVV  440 (456)
Q Consensus       392 ~~~i~~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~~~~i~~~~~v  440 (456)
                      ++.+.+++|+++|.||.++.+. ++.|++++.|++++.+... +.+++++
T Consensus        62 ~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i~~~~~v~~~-i~~~~~~  110 (119)
T cd03358          62 KWELKGTTVKRGASIGANATILPGVTIGEYALVGAGAVVTKD-VPPYALV  110 (119)
T ss_pred             ccccCCcEECCCcEECcCCEEeCCcEECCCCEEccCCEEeCc-CCCCeEE
Confidence            4457788899999999998885 6888888888888877654 4544433

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=99.11  E-value=1.8e-09  Score=95.68  Aligned_cols=79  Identities=23%  Similarity=0.386  Sum_probs=50.4

Q ss_pred             CceeCCCCE--eCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeC-------------eEECCCCEECCC
Q 012817          345 NNIIHPSAE--LGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVN-------------SVVMNHVTIGDG  409 (456)
Q Consensus       345 ~~~i~~~~~--i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~-------------s~i~~~~~ig~~  409 (456)
                      +++|.|...  +|.++.||+++.|+.+|+|++.+.|   .||++|.|+++|.|..             ..+...++||++
T Consensus        59 ~~~i~~~~~~~~g~~i~iG~~~~in~~~~i~d~~~I---~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~  135 (183)
T PRK10092         59 EAYIEPTFRCDYGYNIFLGNNFYANFDCVMLDVCPI---RIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNN  135 (183)
T ss_pred             CEEEeCCEEEeecCCcEEcCCcEECCceEEecCceE---EECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCC
Confidence            456666663  4667777777777777777766654   8999999999999851             122344555555


Q ss_pred             cEEc-CeEECCCCEECCC
Q 012817          410 CSIQ-GSVICSNAQLQER  426 (456)
Q Consensus       410 ~~i~-~~ii~~~~~I~~~  426 (456)
                      |+|+ +++|.++++||++
T Consensus       136 v~IG~~a~I~~gv~IG~~  153 (183)
T PRK10092        136 VWIGGRAVINPGVTIGDN  153 (183)
T ss_pred             cEECCCCEECCCCEECCC
Confidence            5553 5555555555533

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.10  E-value=9.3e-10  Score=102.28  Aligned_cols=32  Identities=13%  Similarity=0.016  Sum_probs=15.0

Q ss_pred             CceeCCCCEeCCCcEECCCCEECCCCEECCCC
Q 012817          345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKC  376 (456)
Q Consensus       345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~  376 (456)
                      ++.|++.+.|..++.||+++.|+++++|+.++
T Consensus       178 gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nA  209 (341)
T TIGR03536       178 GVRIADTARVRLGAYVGEGTTVMHEGFINFNA  209 (341)
T ss_pred             CcEEcCCCeEcCCcEECCCCEEecCCEECcCc
Confidence            44444444444444444444444444444443

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.10  E-value=8.7e-10  Score=102.47  Aligned_cols=53  Identities=17%  Similarity=0.251  Sum_probs=28.8

Q ss_pred             CCCceeCCCCEeCCCcEECCCCEECCCCE-ECCCCe---Ee-eeEECCCCEECCCcEE
Q 012817          343 AQNNIIHPSAELGSKTTVGPHCMLGEGSQ-MGDKCS---VK-RSVIGRHCRIGSNVKV  395 (456)
Q Consensus       343 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~-I~~~~~---i~-~s~Ig~~~~ig~~~~i  395 (456)
                      ++...|.+++.|++++.|.++++|+.++. +|..+.   |. .++||++|.||.+|.|
T Consensus       182 ~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasI  239 (341)
T TIGR03536       182 ADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCST  239 (341)
T ss_pred             cCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEE
Confidence            34555555566666666655666655555 444333   22 2455556665555555

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=6.6e-10  Score=109.41  Aligned_cols=68  Identities=29%  Similarity=0.543  Sum_probs=61.6

Q ss_pred             cEECCCCEECCCCEECCCCeEee-eEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECC
Q 012817          358 TTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQE  425 (456)
Q Consensus       358 ~~i~~~~~i~~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~  425 (456)
                      +.+.++++|+++|.|++++.|++ ++||++|.||+++.|.+|+||++|.||+++.|.+|||+++|.||+
T Consensus       256 ~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~  324 (358)
T COG1208         256 AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGA  324 (358)
T ss_pred             ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECC
Confidence            56677777777788877777775 899999999999999999999999999999999999999999997

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.07  E-value=7.8e-10  Score=110.60  Aligned_cols=77  Identities=26%  Similarity=0.483  Sum_probs=53.2

Q ss_pred             CEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecCeEECCCCEECCCcEEcC
Q 012817          370 SQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       370 ~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~~~~~  448 (456)
                      +.|++++.|.++.||++|.|+.  .+.+|+|+++|.||++|.|.+|+|+++|.|++++.|.+|+|++++.|++++.+.+
T Consensus       283 ~~i~~~~~i~~~~Ig~~~~I~~--~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~  359 (380)
T PRK05293        283 QYIAENAKVKNSLVVEGCVVYG--TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGG  359 (380)
T ss_pred             CEECCCCEEecCEECCCCEEcc--eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcC
Confidence            3333444444567777777753  4667777777777777777777777777777777777777777777777777766

>PRK10191 putative acyl transferase; Provisional

Probab=99.06  E-value=1.6e-09  Score=91.97  Aligned_cols=96  Identities=19%  Similarity=0.220  Sum_probs=61.2

Q ss_pred             ceeCCCCEeCCCcEECC--CCEECCCCEECCCCeEeeeEECCCCEECCCcEE--eCeEECCCCEECCCcEEc-CeEECCC
Q 012817          346 NIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKV--VNSVVMNHVTIGDGCSIQ-GSVICSN  420 (456)
Q Consensus       346 ~~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i--~~s~i~~~~~ig~~~~i~-~~ii~~~  420 (456)
                      ..|++++.+++++.|++  ++.|++++.||+++     .|+++|.||+....  ..++|+++|.||.++.+. ++.|+++
T Consensus        42 ~~I~~~a~Ig~~~~I~~g~~i~I~~~~~IGd~~-----~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~  116 (146)
T PRK10191         42 YEIQAAATIGRRFTIHHGYAVVINKNVVAGDDF-----TIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNN  116 (146)
T ss_pred             cccCCCCEECCCeEECCCCeEEECCCcEECCCC-----EECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCC
Confidence            34455555556666655  45566666666655     55566666654333  235788888888888885 6888888


Q ss_pred             CEECCCcEecCeEECCCCEECCCcEE
Q 012817          421 AQLQERVALKDCQVGQGYVVSAGCEY  446 (456)
Q Consensus       421 ~~I~~~~~i~~~~i~~~~~v~~~~~~  446 (456)
                      +.|++++++.+.+-....+++..+.+
T Consensus       117 ~~Igags~V~~dv~~~~~v~G~pA~~  142 (146)
T PRK10191        117 VTVGAGSVVLDSVPDNALVVGEKARV  142 (146)
T ss_pred             CEECCCCEECCccCCCcEEEccCcEE
Confidence            88888888776655555555555543

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=99.06  E-value=8.6e-10  Score=109.84  Aligned_cols=83  Identities=17%  Similarity=0.418  Sum_probs=72.8

Q ss_pred             CCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEe
Q 012817          350 PSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVAL  429 (456)
Q Consensus       350 ~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i  429 (456)
                      +.+.|++++.| ++|.||++|.|+  +.|.+|+|+++|.|+++|.|.+|+|++++.|++++.+.+|+|+++++|++++.+
T Consensus       277 ~p~~i~~~~~i-~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~  353 (369)
T TIGR02092       277 PPTYYAENSKV-ENSLVANGCIIE--GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKI  353 (369)
T ss_pred             CCcEEcCCCEE-EEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCCCEECCCCEe
Confidence            56666777777 788899999997  468899999999999999999999999999999999999999999999998888


Q ss_pred             cCeEEC
Q 012817          430 KDCQVG  435 (456)
Q Consensus       430 ~~~~i~  435 (456)
                      .+..+.
T Consensus       354 ~~~~~~  359 (369)
T TIGR02092       354 AGTSEQ  359 (369)
T ss_pred             CCCCCc
Confidence            665433

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=99.05  E-value=6.8e-10  Score=106.58  Aligned_cols=95  Identities=24%  Similarity=0.378  Sum_probs=82.5

Q ss_pred             eCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCc
Q 012817          348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERV  427 (456)
Q Consensus       348 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~  427 (456)
                      ..++..|.+.....+++.+..      .+.+.+|.|++||.|..  .|.||+|+.+++|+++|.|++|+|.++|.||.||
T Consensus       270 yd~~w~IyT~~~~~pPak~~~------~s~v~nSLv~~GciI~G--~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~  341 (393)
T COG0448         270 YDRNWPIYTKNKNLPPAKFVN------DSEVSNSLVAGGCIISG--TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGA  341 (393)
T ss_pred             cCCCCceeecCCCCCCceEec------CceEeeeeeeCCeEEEe--EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCC
Confidence            456666766666666666555      45578899999999965  8999999999999999999999999999999999


Q ss_pred             EecCeEECCCCEECCCcEEcCCe
Q 012817          428 ALKDCQVGQGYVVSAGCEYKGES  450 (456)
Q Consensus       428 ~i~~~~i~~~~~v~~~~~~~~~~  450 (456)
                      .|..++|.++++|++|+.+.+..
T Consensus       342 ~l~~aIIDk~v~I~~g~~i~~~~  364 (393)
T COG0448         342 VLRRAIIDKNVVIGEGVVIGGDK  364 (393)
T ss_pred             EEEEEEeCCCcEeCCCcEEcCCc
Confidence            99999999999999999998873

>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=99.04  E-value=1.4e-09  Score=98.22  Aligned_cols=100  Identities=20%  Similarity=0.267  Sum_probs=72.7

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCC-cchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVAN-RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~g-kpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      ++.+||||||.|+||      +.+|+|+|++| +|||+|+++.+... +++++|++++.    ...          ....
T Consensus         8 ~i~~vILAgG~s~Rm------G~~K~ll~~~g~~~ll~~~i~~l~~~-~~~vvvv~~~~----~~~----------~~~~   66 (196)
T PRK00560          8 NIPCVILAGGKSSRM------GENKALLPFGSYSSLLEYQYTRLLKL-FKKVYISTKDK----KFE----------FNAP   66 (196)
T ss_pred             CceEEEECCcccccC------CCCceEEEeCCCCcHHHHHHHHHHHh-CCEEEEEECch----hcc----------cCCc
Confidence            578999999999999      47999999999 99999999999876 88999888741    111          0122


Q ss_pred             EEEc--cCCcChHHHHHHHHhcCCCCcEEEEcCCc--ccCCChhHH
Q 012817           81 VATV--PEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAV  122 (456)
Q Consensus        81 ~~~~--~~~~gt~~al~~~~~~l~~~~~lv~~~D~--i~~~~l~~~  122 (456)
                      ++..  ....|+..++..++.....+.+++++||+  +....++.+
T Consensus        67 ~v~d~~~~~~gpl~gi~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l  112 (196)
T PRK00560         67 FLLEKESDLFSPLFGIINAFLTLQTPEIFFISVDTPFVSFESIKKL  112 (196)
T ss_pred             EEecCCCCCCCcHHHHHHHHHhcCCCeEEEEecCcCcCCHHHHHHH
Confidence            2221  22357777777776655567899999994  334445555

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=99.04  E-value=2.3e-09  Score=96.19  Aligned_cols=51  Identities=22%  Similarity=0.335  Sum_probs=32.8

Q ss_pred             CCCceeCCCCEe--CCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe
Q 012817          343 AQNNIIHPSAEL--GSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV  396 (456)
Q Consensus       343 ~~~~~i~~~~~i--~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~  396 (456)
                      +++++|.|.+.+  |.++.||+++.|+.+|.|.+..   +..||++|.|+++|.|.
T Consensus        59 g~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~d~~---~I~IGd~v~Ig~~v~I~  111 (203)
T PRK09527         59 GENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDY---TVTIGDNVLIAPNVTLS  111 (203)
T ss_pred             CCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEecCC---CEEECCCCEECCCCEEE
Confidence            456667776665  3455555555555555553332   35899999999999886

>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat

Probab=99.04  E-value=1.9e-09  Score=100.27  Aligned_cols=117  Identities=23%  Similarity=0.296  Sum_probs=80.8

Q ss_pred             EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccceEEEE
Q 012817            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT   83 (456)
Q Consensus         5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~   83 (456)
                      |||||||.|+||    .   +|+|++++|+|||+|+++.+..++ +++++|+++.....+.+..++..     .++.++.
T Consensus         2 aiIlA~G~S~R~----~---~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~-----~~v~~v~   69 (233)
T cd02518           2 AIIQARMGSTRL----P---GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK-----LGVKVFR   69 (233)
T ss_pred             EEEeeCCCCCCC----C---CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH-----cCCeEEE
Confidence            799999999999    2   599999999999999999999987 89999998754211234443322     1234433


Q ss_pred             ccCCcChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHHHHhcCceEE
Q 012817           84 VPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVT  134 (456)
Q Consensus        84 ~~~~~gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t  134 (456)
                      -+. .+.......+++....+.++++.||  ++....++.+++.+...+.+++
T Consensus        70 ~~~-~~~l~~~~~~~~~~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~  121 (233)
T cd02518          70 GSE-EDVLGRYYQAAEEYNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT  121 (233)
T ss_pred             CCc-hhHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence            222 2222222333333344679999999  6777789999998877666654

Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=99.04  E-value=1.2e-09  Score=108.43  Aligned_cols=83  Identities=19%  Similarity=0.347  Sum_probs=74.5

Q ss_pred             EECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecCeEECCCCEECCCc
Q 012817          365 MLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGC  444 (456)
Q Consensus       365 ~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~  444 (456)
                      .+.+.+.|++.+.|.+|+||++|.|+++ .|.+|+|+++|.||++|.|.+|+|++++.|++++.|.+|+||+++.|++++
T Consensus       279 ~~~~~~~i~~~~~i~~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~  357 (361)
T TIGR02091       279 FLPPAKFVDSDAQVVDSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGV  357 (361)
T ss_pred             CCCCceEecCCCEEECCEECCCCEECCC-EEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCCCEECCCC
Confidence            3445566677777778899999999987 889999999999999999999999999999999999999999999999999


Q ss_pred             EEcC
Q 012817          445 EYKG  448 (456)
Q Consensus       445 ~~~~  448 (456)
                      .+.+
T Consensus       358 ~i~~  361 (361)
T TIGR02091       358 VIGN  361 (361)
T ss_pred             EeCC
Confidence            8753

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=99.02  E-value=1.5e-09  Score=98.38  Aligned_cols=67  Identities=27%  Similarity=0.368  Sum_probs=40.9

Q ss_pred             eEECCCCEECCCcEEeCe-EECCCCEECCCcEEcC---------eEECCCCEECCCc-EecCeEECCCCEECCCcEEc
Q 012817          381 SVIGRHCRIGSNVKVVNS-VVMNHVTIGDGCSIQG---------SVICSNAQLQERV-ALKDCQVGQGYVVSAGCEYK  447 (456)
Q Consensus       381 s~Ig~~~~ig~~~~i~~s-~i~~~~~ig~~~~i~~---------~ii~~~~~I~~~~-~i~~~~i~~~~~v~~~~~~~  447 (456)
                      +.++++++|.-++.++.| +|++||.||.++.|.+         ++|+++|.||+++ .+.++.+|+|++|++|+.+.
T Consensus       139 A~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~  216 (271)
T COG2171         139 AGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFIT  216 (271)
T ss_pred             cccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCCCcEEecceEEe
Confidence            466666666666666533 3666666666666643         5577777777776 44566666666666665543

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=99.02  E-value=1.7e-09  Score=107.20  Aligned_cols=107  Identities=21%  Similarity=0.304  Sum_probs=78.5

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~   81 (456)
                      ++.+||||||.|+||      +.+|+|+|++|+|||+|+++.+... +.+++|+++...    ...+ ..     .++.+
T Consensus       174 ~i~~iILAGG~SsRm------G~~K~ll~~~Gk~ll~~~l~~l~~~-~~~vvV~~~~~~----~~~~-~~-----~~v~~  236 (369)
T PRK14490        174 PLSGLVLAGGRSSRM------GSDKALLSYHESNQLVHTAALLRPH-CQEVFISCRAEQ----AEQY-RS-----FGIPL  236 (369)
T ss_pred             CceEEEEcCCccccC------CCCcEEEEECCccHHHHHHHHHHhh-CCEEEEEeCCch----hhHH-hh-----cCCcE
Confidence            467999999999999      3699999999999999999999764 788888776431    1111 11     12344


Q ss_pred             EEccC-CcChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHH
Q 012817           82 ATVPE-DVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAA  125 (456)
Q Consensus        82 ~~~~~-~~gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~  125 (456)
                      +.... ..|...+++.++++...+.+++++||  ++....+..+++.
T Consensus       237 i~d~~~~~Gpl~gi~~al~~~~~~~~lv~~~DmP~i~~~~i~~L~~~  283 (369)
T PRK14490        237 ITDSYLDIGPLGGLLSAQRHHPDAAWLVVACDLPFLDEATLQQLVEG  283 (369)
T ss_pred             EeCCCCCCCcHHHHHHHHHhCCCCcEEEEeCCcCCCCHHHHHHHHHh
Confidence            43332 36888888888777666789999999  5555667777765

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.01  E-value=4.6e-09  Score=97.26  Aligned_cols=49  Identities=33%  Similarity=0.384  Sum_probs=26.8

Q ss_pred             CeEECCCCEECCCcEEc-----C----eEECCCCEECCCcEecCeEECCCCEECCCcEE
Q 012817          397 NSVVMNHVTIGDGCSIQ-----G----SVICSNAQLQERVALKDCQVGQGYVVSAGCEY  446 (456)
Q Consensus       397 ~s~i~~~~~ig~~~~i~-----~----~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~~~  446 (456)
                      +|+|+++|.|+.++.|.     +    +.||++|.||.++.| +..||++++|++|+.+
T Consensus       199 dvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGagA~I-GI~IGd~~VVGAGaVV  256 (319)
T TIGR03535       199 GVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGANSGL-GISLGDDCVVEAGLYV  256 (319)
T ss_pred             CCEECCCCEECCCceecceecCCCcccEEECCCcEECCCCEE-CeEECCCCEECCCCEE
Confidence            44455555555555522     2    556666666666665 5555555555555543

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=99.00  E-value=2.1e-09  Score=95.48  Aligned_cols=69  Identities=17%  Similarity=0.160  Sum_probs=48.4

Q ss_pred             EECCCCEECCCcEEeCeE-EC-CCCEECCCcEEc-CeEECCCCEECCCcEec-CeEECCCCEECCCcEEcCCe
Q 012817          382 VIGRHCRIGSNVKVVNSV-VM-NHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGES  450 (456)
Q Consensus       382 ~Ig~~~~ig~~~~i~~s~-i~-~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~~~  450 (456)
                      +||++|.|-++++|.... -+ .-+.||+++.+= .+.|.-+|+||.++++. ++.++.++.|+.-+.+.|-+
T Consensus        83 ~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~s  155 (260)
T COG1043          83 IIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLS  155 (260)
T ss_pred             EECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcc
Confidence            777777777777777333 33 335678888874 88888888888888885 56666666666666666543

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=99.00  E-value=3.6e-09  Score=93.06  Aligned_cols=50  Identities=24%  Similarity=0.347  Sum_probs=28.6

Q ss_pred             CCceeCCCCEe--CCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe
Q 012817          344 QNNIIHPSAEL--GSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV  396 (456)
Q Consensus       344 ~~~~i~~~~~i--~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~  396 (456)
                      .+..+.+++.+  +.++.||+++.|+.+|.|.+.+   +..||++|.|+++|.|.
T Consensus        47 ~~~~i~~~~~~~~~~~i~IG~~v~I~~~~~i~~~~---~i~IG~~v~Ig~~~~I~   98 (169)
T cd03357          47 ENVYIEPPFHCDYGYNIHIGDNFYANFNCTILDVA---PVTIGDNVLIGPNVQIY   98 (169)
T ss_pred             CCCEEcCCEEEEeCCcCEECCCceEcCCEEEeccC---cEEECCCCEECCCCEEE
Confidence            44555555433  3344555555555554443322   34888888888888884

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>PLN02694 serine O-acetyltransferase

Probab=98.99  E-value=2.4e-09  Score=99.73  Aligned_cols=90  Identities=21%  Similarity=0.282  Sum_probs=65.9

Q ss_pred             CceeCCCCEeCCCcEECC--CCEECCCCEECCCCeEeeeEECCCCEEC---CCcEEeCeEECCCCEECCCcEE-cCeEEC
Q 012817          345 NNIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIG---SNVKVVNSVVMNHVTIGDGCSI-QGSVIC  418 (456)
Q Consensus       345 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~i~~s~Ig~~~~ig---~~~~i~~s~i~~~~~ig~~~~i-~~~ii~  418 (456)
                      .+.|+|.+.||.++.|..  +++||++|.||++|.|     .++|++|   ..+..++++|+++|.||.++.| +++.||
T Consensus       160 gvdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I-----~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IG  234 (294)
T PLN02694        160 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSI-----LHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIG  234 (294)
T ss_pred             eEEeCCcceecCCEEEeCCCCeEECCCcEECCCCEE-----eecceeCCcccccCCCccEECCCeEECCeeEECCCCEEC
Confidence            456778888888877765  6777777777777744     4444443   3344567899999999999999 699999


Q ss_pred             CCCEECCCcEecCeEECCCCEE
Q 012817          419 SNAQLQERVALKDCQVGQGYVV  440 (456)
Q Consensus       419 ~~~~I~~~~~i~~~~i~~~~~v  440 (456)
                      +++.||++++|... |.+++++
T Consensus       235 d~a~IGAgSVV~kd-VP~~~~v  255 (294)
T PLN02694        235 EGAKIGAGSVVLID-VPPRTTA  255 (294)
T ss_pred             CCCEECCCCEECCc-CCCCcEE
Confidence            99999999988764 3444443

>PRK10502 putative acyl transferase; Provisional

Probab=98.99  E-value=3.4e-09  Score=94.30  Aligned_cols=49  Identities=22%  Similarity=0.381  Sum_probs=29.5

Q ss_pred             CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe---eeEECCCCEECCCcEEe
Q 012817          344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK---RSVIGRHCRIGSNVKVV  396 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~---~s~Ig~~~~ig~~~~i~  396 (456)
                      +++.|++++.|...    .+..||++|.|++++.|.   ...||++|.|++++.|.
T Consensus        56 ~~~~I~~~a~i~~~----~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~  107 (182)
T PRK10502         56 KGVVIRPSVRITYP----WKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLC  107 (182)
T ss_pred             CCcEEcCCEEEecC----CeEEECCCeEECCCceecccCceEECCCcEECCCeEEE
Confidence            44455555544321    234555555566665554   36888888888888874

>TIGR01172 cysE serine O-acetyltransferase

Probab=98.99  E-value=2.7e-09  Score=92.95  Aligned_cols=89  Identities=22%  Similarity=0.313  Sum_probs=46.0

Q ss_pred             CceeCCCCEeCCCcEECCC--CEECCCCEECCCCeEeeeEECCCCEECCCc---EEeCeEECCCCEECCCcEEc-CeEEC
Q 012817          345 NNIIHPSAELGSKTTVGPH--CMLGEGSQMGDKCSVKRSVIGRHCRIGSNV---KVVNSVVMNHVTIGDGCSIQ-GSVIC  418 (456)
Q Consensus       345 ~~~i~~~~~i~~~~~i~~~--~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~---~i~~s~i~~~~~ig~~~~i~-~~ii~  418 (456)
                      ...|++++.|++++.|+.+  +.|+++|.||++|     .|+++|.|+...   ....++|+++|.||.++.|. +++||
T Consensus        61 ~~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~-----~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG  135 (162)
T TIGR01172        61 GVDIHPGARIGRGVFIDHGTGVVIGETAVIGDDV-----TIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVG  135 (162)
T ss_pred             CeEeCCCCEECCCeEECCCCeEEECCCCEECCCC-----EEcCCCEECCCccccCCcCCEECCCcEEcCCCEEECCcEEC
Confidence            3445555555555544332  3444444444443     333344443221   01235677777777777774 57777


Q ss_pred             CCCEECCCcEecCeEECCCCE
Q 012817          419 SNAQLQERVALKDCQVGQGYV  439 (456)
Q Consensus       419 ~~~~I~~~~~i~~~~i~~~~~  439 (456)
                      +++.|+++++|..- |.++++
T Consensus       136 ~~~~Iga~s~V~~d-vp~~~~  155 (162)
T TIGR01172       136 ENAKIGANSVVLKD-VPPGAT  155 (162)
T ss_pred             CCCEECCCCEECCC-CCCCCE
Confidence            77777777666542 344443

Cysteine biosynthesis

>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional

Probab=98.99  E-value=3.2e-09  Score=103.37  Aligned_cols=108  Identities=20%  Similarity=0.282  Sum_probs=79.0

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~   82 (456)
                      +.+||||||.|+||      +.+|+|+|+.|+||++|+++.+... +.+++|+++..    ......    ..  .+.++
T Consensus       161 i~~IILAGGkSsRM------G~dKaLL~~~GkpLl~~~ie~l~~~-~~~ViVv~~~~----~~~~~~----~~--~v~~I  223 (346)
T PRK14500        161 LYGLVLTGGKSRRM------GKDKALLNYQGQPHAQYLYDLLAKY-CEQVFLSARPS----QWQGTP----LE--NLPTL  223 (346)
T ss_pred             ceEEEEeccccccC------CCCcccceeCCccHHHHHHHHHHhh-CCEEEEEeCch----Hhhhcc----cc--CCeEE
Confidence            56899999999999      4699999999999999999998754 78998887632    111100    01  12333


Q ss_pred             Ec-cCCcChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHHHH
Q 012817           83 TV-PEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHR  127 (456)
Q Consensus        83 ~~-~~~~gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~~~  127 (456)
                      .. ....|...+|+.+++....+.+++++||  ++....+..+++.+.
T Consensus       224 ~D~~~~~GPlagI~aaL~~~~~~~~lVl~cDmP~l~~~~l~~L~~~~~  271 (346)
T PRK14500        224 PDRGESVGPISGILTALQSYPGVNWLVVACDLAYLNSETVEKLLAHYR  271 (346)
T ss_pred             eCCCCCCChHHHHHHHHHhCCCCCEEEEECCcCCCCHHHHHHHHHhhh
Confidence            22 2237999999999887766688999999  455556777777653

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=98.99  E-value=7.8e-09  Score=96.45  Aligned_cols=91  Identities=18%  Similarity=0.226  Sum_probs=53.5

Q ss_pred             CCceeCCCCEeCCCcEECC--CCEECCCCEECCCCeEeeeEECCCCEECCC---cEEeCeEECCCCEECCCcEEc-CeEE
Q 012817          344 QNNIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIGSN---VKVVNSVVMNHVTIGDGCSIQ-GSVI  417 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~---~~i~~s~i~~~~~ig~~~~i~-~~ii  417 (456)
                      ..+.|+|.+.||.++.|+.  +++||++|.||++|     .|+++|+||..   +...+.+|+++|.||.+|.|. ++.|
T Consensus       140 ~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv-----~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilggv~I  214 (273)
T PRK11132        140 FQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDV-----SILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEV  214 (273)
T ss_pred             eeeEecCcceECCCeEEcCCCCeEECCCCEECCCC-----EEcCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCCCEE
Confidence            3555566666665555543  33444444444444     34444444431   112246788888888888884 7888


Q ss_pred             CCCCEECCCcEecCeEECCCCEE
Q 012817          418 CSNAQLQERVALKDCQVGQGYVV  440 (456)
Q Consensus       418 ~~~~~I~~~~~i~~~~i~~~~~v  440 (456)
                      |++|.||++++|.+. |.+++++
T Consensus       215 G~~a~IGAgSvV~~d-Vp~~~~v  236 (273)
T PRK11132        215 GRGAKIGAGSVVLQP-VPPHTTA  236 (273)
T ss_pred             CCCCEECCCCEECcc-cCCCcEE
Confidence            888888888877653 4444444

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=2.1e-09  Score=98.07  Aligned_cols=92  Identities=14%  Similarity=0.279  Sum_probs=73.3

Q ss_pred             eCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecC--
Q 012817          354 LGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD--  431 (456)
Q Consensus       354 i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~--  431 (456)
                      |-.++.|++.+.+.+.+.||+|+     .||.+++||+++++.+|+|.+++.|.+|+.+-+||||+++.||..+.+++  
T Consensus       285 IigdVyIhPsakvhptAkiGPNV-----SIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~p  359 (407)
T KOG1460|consen  285 IIGDVYIHPSAKVHPTAKIGPNV-----SIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIP  359 (407)
T ss_pred             EEeeeEEcCcceeCCccccCCCc-----eecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccc
Confidence            55556666666666666666665     89999999999999999999999999999999999999999999888743  


Q ss_pred             ------------eEECCCCEECCCcEEcCCe
Q 012817          432 ------------CQVGQGYVVSAGCEYKGES  450 (456)
Q Consensus       432 ------------~~i~~~~~v~~~~~~~~~~  450 (456)
                                  ++.|+.+.|+.-+.+.++.
T Consensus       360 v~~s~~~~~~a~Tilga~v~v~dev~v~~s~  390 (407)
T KOG1460|consen  360 VEPSPNLPFAALTILGADVSVEDEVIVLNSI  390 (407)
T ss_pred             cccCCCCCcceeEEecccceecceeEEeeee
Confidence                        4556666666666555543

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=98.98  E-value=5.3e-09  Score=96.85  Aligned_cols=89  Identities=25%  Similarity=0.395  Sum_probs=56.1

Q ss_pred             CCCEeCCCcEECCCCEECCCC-EECCCCeEeeeEECCCCEECCCcEEe-CeEECC----C----CEECCCcEEc-CeEEC
Q 012817          350 PSAELGSKTTVGPHCMLGEGS-QMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMN----H----VTIGDGCSIQ-GSVIC  418 (456)
Q Consensus       350 ~~~~i~~~~~i~~~~~i~~~~-~I~~~~~i~~s~Ig~~~~ig~~~~i~-~s~i~~----~----~~ig~~~~i~-~~ii~  418 (456)
                      -+|.|++++.|.++++|..++ +||+. .| ++.|+++|.||++|.|. ++.|+.    +    +.||++|+|+ +|.| 
T Consensus       164 lGAyLGeGtvVm~~a~VN~nAgtIG~~-iI-~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGagA~I-  240 (319)
T TIGR03535       164 LGAHLAEGTTVMHEGFVNFNAGTLGAS-MV-EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGANSGL-  240 (319)
T ss_pred             eccEECCCCEEcCCCEEccCceEecCc-eE-EEEEccCCEECCCCEECCCceecceecCCCcccEEECCCcEECCCCEE-
Confidence            344455555555555555555 45553 33 57788888888888887 555333    6    7777777776 6666 


Q ss_pred             CCCEECCCcEecCeEECCCCEECCCcEEc
Q 012817          419 SNAQLQERVALKDCQVGQGYVVSAGCEYK  447 (456)
Q Consensus       419 ~~~~I~~~~~i~~~~i~~~~~v~~~~~~~  447 (456)
                       ++.||     ++|+||.|++|.+++.+.
T Consensus       241 -GI~IG-----d~~VVGAGaVVtkgT~v~  263 (319)
T TIGR03535       241 -GISLG-----DDCVVEAGLYVTAGTKVT  263 (319)
T ss_pred             -CeEEC-----CCCEECCCCEEeCCeEEE
Confidence             56666     456666666666666543

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>PRK10502 putative acyl transferase; Provisional

Probab=98.97  E-value=5.1e-09  Score=93.14  Aligned_cols=67  Identities=24%  Similarity=0.256  Sum_probs=38.2

Q ss_pred             eEECCCCEECCCcEEe---CeEECCCCEECCCcEEc----------------CeEECCCCEECCCcEe-cCeEECCCCEE
Q 012817          381 SVIGRHCRIGSNVKVV---NSVVMNHVTIGDGCSIQ----------------GSVICSNAQLQERVAL-KDCQVGQGYVV  440 (456)
Q Consensus       381 s~Ig~~~~ig~~~~i~---~s~i~~~~~ig~~~~i~----------------~~ii~~~~~I~~~~~i-~~~~i~~~~~v  440 (456)
                      ..||++|.|++++.|.   ...|+++|.|++++.|.                ..+|+++|.||++++| .++.||++++|
T Consensus        72 ~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vI  151 (182)
T PRK10502         72 LTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVV  151 (182)
T ss_pred             EEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcEEcCCCEEcCCCEECCCCEE
Confidence            3555555555555554   34555666665555552                2456666666666655 36666666666


Q ss_pred             CCCcEEc
Q 012817          441 SAGCEYK  447 (456)
Q Consensus       441 ~~~~~~~  447 (456)
                      ++++.+.
T Consensus       152 ga~svV~  158 (182)
T PRK10502        152 GARSSVF  158 (182)
T ss_pred             CCCCEEe
Confidence            6666543

>PLN02357 serine acetyltransferase

Probab=98.93  E-value=7.2e-09  Score=99.32  Aligned_cols=99  Identities=19%  Similarity=0.251  Sum_probs=67.9

Q ss_pred             CceeCCCCEeCCCcEECC--CCEECCCCEECCCCeEeeeEECCCCEECCC---cEEeCeEECCCCEECCCcEE-cCeEEC
Q 012817          345 NNIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIGSN---VKVVNSVVMNHVTIGDGCSI-QGSVIC  418 (456)
Q Consensus       345 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~---~~i~~s~i~~~~~ig~~~~i-~~~ii~  418 (456)
                      .+.|+|.+.||.++.|..  +++||++|+||++|     .|+++|+||..   ...++++|+++|.||.++.| +++.||
T Consensus       226 ~vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV-----~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IG  300 (360)
T PLN02357        226 AVDIHPGAKIGQGILLDHATGVVIGETAVVGNNV-----SILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIG  300 (360)
T ss_pred             ceeeCCCCEECCCeEECCCCceEECCCCEECCCC-----EEeCCceecCccccCCccCceeCCCeEECCceEEECCeEEC
Confidence            456777777777777764  56677777777766     34444444432   12346889999999999888 589999


Q ss_pred             CCCEECCCcEecCeEECCCCEECCCcEEcC
Q 012817          419 SNAQLQERVALKDCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       419 ~~~~I~~~~~i~~~~i~~~~~v~~~~~~~~  448 (456)
                      +++.||++++|.+.+-...+++|.-+.+-+
T Consensus       301 dga~IGAgSVV~~dVP~~~~v~G~PArvv~  330 (360)
T PLN02357        301 EGAKIGAGSVVLKDVPPRTTAVGNPARLIG  330 (360)
T ss_pred             CCCEECCCCEECcccCCCcEEECCCeEEEc
Confidence            999999999887654444444555555433

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=98.93  E-value=7.1e-09  Score=96.70  Aligned_cols=90  Identities=19%  Similarity=0.348  Sum_probs=50.2

Q ss_pred             CCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCC---cEEcCeEECCCCEECCC
Q 012817          350 PSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDG---CSIQGSVICSNAQLQER  426 (456)
Q Consensus       350 ~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~---~~i~~~ii~~~~~I~~~  426 (456)
                      ..+.+..++.|++++.||+++.|+.++.|   +||++|.||++|.|     +.+|++|..   +....++||++|.||+|
T Consensus       134 ~~~~~~~gidI~~~a~IG~g~~I~h~~gi---vIG~~a~IGdnv~I-----~~~VtiGg~~~~~~~~~p~IGd~V~IGag  205 (273)
T PRK11132        134 NQISVAFQVDIHPAAKIGRGIMLDHATGI---VIGETAVIENDVSI-----LQSVTLGGTGKTSGDRHPKIREGVMIGAG  205 (273)
T ss_pred             hcceeeeeeEecCcceECCCeEEcCCCCe---EECCCCEECCCCEE-----cCCcEEecCcccCCCcCCEECCCcEEcCC
Confidence            34444556666666666666666655432   66666666666666     344444421   11224556666666666


Q ss_pred             cEe-cCeEECCCCEECCCcEEc
Q 012817          427 VAL-KDCQVGQGYVVSAGCEYK  447 (456)
Q Consensus       427 ~~i-~~~~i~~~~~v~~~~~~~  447 (456)
                      +.| .++.||++++|++|+.+.
T Consensus       206 a~Ilggv~IG~~a~IGAgSvV~  227 (273)
T PRK11132        206 AKILGNIEVGRGAKIGAGSVVL  227 (273)
T ss_pred             CEEcCCCEECCCCEECCCCEEC
Confidence            644 355666666666665544

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.92  E-value=4.2e-09  Score=106.57  Aligned_cols=73  Identities=21%  Similarity=0.380  Sum_probs=67.3

Q ss_pred             CeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecCeEECCCCEECCCcEEcCC
Q 012817          376 CSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGE  449 (456)
Q Consensus       376 ~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~~~~~~  449 (456)
                      +.+.+|+||++|.| ++|.|.+|+|+++|.||++|.|.+|+|+++|.|++++.|.+|+|++++.|++++.+.+.
T Consensus       323 ~~~~~s~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~~~i~~~~~i~~~  395 (425)
T PRK00725        323 GMAINSLVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRGCVIPEGMVIGED  395 (425)
T ss_pred             ceEEeCEEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCCCEECCCCEECCC
Confidence            35668999999999 78999999999999999999999999999999999999999999999999999888754

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=98.92  E-value=1.9e-08  Score=90.30  Aligned_cols=51  Identities=20%  Similarity=0.227  Sum_probs=30.7

Q ss_pred             ceeCCCCEeCCCcEE----CCCCEECCCCEECCCCeEe---eeEECCCCEECCCcEEe
Q 012817          346 NIIHPSAELGSKTTV----GPHCMLGEGSQMGDKCSVK---RSVIGRHCRIGSNVKVV  396 (456)
Q Consensus       346 ~~i~~~~~i~~~~~i----~~~~~i~~~~~I~~~~~i~---~s~Ig~~~~ig~~~~i~  396 (456)
                      ..+++++.++.++++    .+...||++|.|++++.|.   +..||++|.|++++.|.
T Consensus        44 I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~  101 (192)
T PRK09677         44 INFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFIT  101 (192)
T ss_pred             EEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEE
Confidence            334444555544444    2345566666666666554   46788888888887776

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.91  E-value=6.7e-09  Score=104.68  Aligned_cols=71  Identities=20%  Similarity=0.320  Sum_probs=66.8

Q ss_pred             eEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecCeEECCCCEECCCcEEcC
Q 012817          377 SVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       377 ~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~~~~~  448 (456)
                      .+.++.||++|.|+ ++.|.+|+|+++|.||++|.|.+|+|+++|.|+++++|.+|+|++++.|++++.+.+
T Consensus       312 ~~~~~~ig~~~~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~  382 (407)
T PRK00844        312 SAQDSLVSAGSIIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVVVPPGATIGV  382 (407)
T ss_pred             eEEeCEEcCCCEEC-CeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCCEECC
Confidence            45678999999998 999999999999999999999999999999999999999999999999999999877

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=98.91  E-value=1.7e-08  Score=80.78  Aligned_cols=79  Identities=25%  Similarity=0.471  Sum_probs=42.9

Q ss_pred             eCCCCEeCCCcEECC--CCEECCCCEECCCCeEeeeEECCCCEECCCcE---EeCeEECCCCEECCCcEEc-CeEECCCC
Q 012817          348 IHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVK---VVNSVVMNHVTIGDGCSIQ-GSVICSNA  421 (456)
Q Consensus       348 i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~---i~~s~i~~~~~ig~~~~i~-~~ii~~~~  421 (456)
                      |++++.|++++.++.  .+.|++++.|++++     .|+.++.|+.++.   +.+++|++++.|+.++.+. ++.|++++
T Consensus         5 i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~-----~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~   79 (101)
T cd03354           5 IHPGAKIGPGLFIDHGTGIVIGETAVIGDNC-----TIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNV   79 (101)
T ss_pred             eCCCCEECCCEEECCCCeEEECCCCEECCCC-----EEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCCC
Confidence            444444444444433  33444444444444     4455555555553   4466666666666666665 46666666


Q ss_pred             EECCCcEecC
Q 012817          422 QLQERVALKD  431 (456)
Q Consensus       422 ~I~~~~~i~~  431 (456)
                      .|++++.|..
T Consensus        80 ~i~~~~~i~~   89 (101)
T cd03354          80 KIGANAVVTK   89 (101)
T ss_pred             EECCCCEECc
Confidence            6666655543

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=98.90  E-value=8.2e-09  Score=102.19  Aligned_cols=87  Identities=18%  Similarity=0.358  Sum_probs=57.7

Q ss_pred             CCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcE-----EcCeEECCCCEECCCc-Ee
Q 012817          356 SKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCS-----IQGSVICSNAQLQERV-AL  429 (456)
Q Consensus       356 ~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~-----i~~~ii~~~~~I~~~~-~i  429 (456)
                      +++.+.+++.|+++|.| .++     +|+.+|.||++|.|++|+|+++|+||++|.     |.+|+|+++++|+.++ .+
T Consensus       247 ~~~~i~~~~~i~~~~~i-~~~-----~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~~~i~~~~~~~  320 (353)
T TIGR01208       247 DESKIRGRVVVGEGAKI-VNS-----VIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDESVIEGVQARI  320 (353)
T ss_pred             CCCEEcCCEEECCCCEE-eCC-----EEECCcEECCCCEEcCcEECCCCEECCCCEEeeeEEEeeEEcCCCEEcCCccee
Confidence            34445555555555555 344     444445555555555555555555555555     5689999999999884 88


Q ss_pred             cCeEECCCCEECCCcEEcC
Q 012817          430 KDCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       430 ~~~~i~~~~~v~~~~~~~~  448 (456)
                      .+++|++++.|++++.+.+
T Consensus       321 ~~~ii~~~~~i~~~~~~~~  339 (353)
T TIGR01208       321 VDSVIGKKVRIKGNRRRPG  339 (353)
T ss_pred             ecCEEcCCCEECCCccccc
Confidence            8999999999999988764

Alternate name: dTDP-D-glucose synthase

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=98.90  E-value=7.6e-09  Score=105.11  Aligned_cols=98  Identities=19%  Similarity=0.319  Sum_probs=78.1

Q ss_pred             ceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECC----------------C---CEECCCcEEeCeEECCCCEE
Q 012817          346 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGR----------------H---CRIGSNVKVVNSVVMNHVTI  406 (456)
Q Consensus       346 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~----------------~---~~ig~~~~i~~s~i~~~~~i  406 (456)
                      ++|++++.|+ ++.| .+++|+++|.|+++|.|.+|+|..                +   +.||++|.|.+++|+++|.|
T Consensus       316 s~I~~~~~I~-~~~I-~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~I  393 (436)
T PLN02241        316 SIISHGCFLR-ECKI-EHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARI  393 (436)
T ss_pred             eEEcCCcEEc-CeEE-EeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEE
Confidence            6788888888 8888 478999999999999999987744                3   38999999999999999999


Q ss_pred             CCCcEEcCe-EECCCCEECCCcEec-C-eEECCCCEECCCcE
Q 012817          407 GDGCSIQGS-VICSNAQLQERVALK-D-CQVGQGYVVSAGCE  445 (456)
Q Consensus       407 g~~~~i~~~-ii~~~~~I~~~~~i~-~-~~i~~~~~v~~~~~  445 (456)
                      |+++.+.++ -+.+..++|+++++. + ++||+++.+.+|+.
T Consensus       394 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  435 (436)
T PLN02241        394 GKNVVIINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTV  435 (436)
T ss_pred             CCCcEEecccccCCccccccccEEeCCEEEEcCCcEeCCCCC
Confidence            999999743 355555556555554 3 68888888887764

>PLN02694 serine O-acetyltransferase

Probab=98.88  E-value=7.4e-09  Score=96.54  Aligned_cols=65  Identities=23%  Similarity=0.442  Sum_probs=31.1

Q ss_pred             eEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEe-cCeEECCCCEECCCcEEc
Q 012817          381 SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYK  447 (456)
Q Consensus       381 s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~  447 (456)
                      .+||++|.||++|.|.+++...++  +..+..++++|+++|.||++++| .+++||++++|++|+.+.
T Consensus       181 VVIGe~a~IGdnv~I~~~VtLGg~--g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~IGAgSVV~  246 (294)
T PLN02694        181 VVIGETAVIGNNVSILHHVTLGGT--GKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVL  246 (294)
T ss_pred             eEECCCcEECCCCEEeecceeCCc--ccccCCCccEECCCeEECCeeEECCCCEECCCCEECCCCEEC
Confidence            355555555555555422211111  22333345555555555555554 355555555555555544

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.88  E-value=8.4e-09  Score=104.53  Aligned_cols=74  Identities=18%  Similarity=0.362  Sum_probs=65.0

Q ss_pred             CCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECC-------------------CCEECCCcEecCeEEC
Q 012817          375 KCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICS-------------------NAQLQERVALKDCQVG  435 (456)
Q Consensus       375 ~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~-------------------~~~I~~~~~i~~~~i~  435 (456)
                      ++.|+++.||++|.| +++.|++|+|+++|.||++|.|.+|+|+.                   ++.||++|.|.+|+|+
T Consensus       303 ~~~~~~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~  381 (429)
T PRK02862        303 DATITESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIID  381 (429)
T ss_pred             ccEEEeCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEEC
Confidence            567778899999999 88899999999999999999999999976                   6889999999999999


Q ss_pred             CCCEECCCcEEcCC
Q 012817          436 QGYVVSAGCEYKGE  449 (456)
Q Consensus       436 ~~~~v~~~~~~~~~  449 (456)
                      +++.|++++.+.+.
T Consensus       382 ~~~~i~~~~~~~~~  395 (429)
T PRK02862        382 KNARIGNNVRIVNK  395 (429)
T ss_pred             CCcEECCCcEEecC
Confidence            99999999888643

>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]

Probab=98.88  E-value=1.8e-08  Score=88.23  Aligned_cols=130  Identities=12%  Similarity=0.184  Sum_probs=86.0

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i   79 (456)
                      |+.-|||+|.|.++|.       ..|-+.+++|+|||.|+++.+.+++ +++|+|-+...+..+.-+.|..+.+..+ +.
T Consensus         2 ~~~iAiIpAR~gSKgI-------~~KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsDs~~Il~~A~~ygak~~~~R-p~   73 (228)
T COG1083           2 MKNIAIIPARGGSKGI-------KNKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDSEEILEEAKKYGAKVFLKR-PK   73 (228)
T ss_pred             cceEEEEeccCCCCcC-------CccchHHhCCcchHHHHHHHHhcCCccceEEEcCCcHHHHHHHHHhCccccccC-Ch
Confidence            5667999999999998       5699999999999999999999998 6778777765443333333333322111 01


Q ss_pred             EEEEccCCcChHHHHHHHHhcCC-C-CcEEEEcCC--cccCCChhHHHHHHHhcCceEEEEEeec
Q 012817           80 EVATVPEDVGTAGALRAIAHHLT-A-KDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSV  140 (456)
Q Consensus        80 ~~~~~~~~~gt~~al~~~~~~l~-~-~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~~~~~~  140 (456)
                      ++.  ++...+-+++..+.+... . +.++++.+-  ++...+|++.++.+.+++.+..+.+++.
T Consensus        74 ~LA--~D~ast~~~~lh~le~~~~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~  136 (228)
T COG1083          74 ELA--SDRASTIDAALHALESFNIDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVEC  136 (228)
T ss_pred             hhc--cCchhHHHHHHHHHHHhccccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeec
Confidence            110  112233344555544433 3 347777776  6777899999999998887765555544

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=98.86  E-value=2.7e-08  Score=80.69  Aligned_cols=83  Identities=17%  Similarity=0.233  Sum_probs=43.4

Q ss_pred             eCCCCEeCCCcEECC--CCEECCCCEECCCCeEeee---EECCCCEECCCcEEeCeEECCCCEECCCcEEc-CeEECCCC
Q 012817          348 IHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRS---VIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNA  421 (456)
Q Consensus       348 i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~i~~s---~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ii~~~~  421 (456)
                      |++++.|++++.|..  ++.||++|.|+++|.|.++   .+..++.+.......+++|+++|.||+++.+. ++.|++++
T Consensus         4 Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig~~~   83 (109)
T cd04647           4 IGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGDGA   83 (109)
T ss_pred             ECCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEECCCC
Confidence            444444444444444  5555555666555555532   23333333223333455666666666666663 66666666


Q ss_pred             EECCCcEec
Q 012817          422 QLQERVALK  430 (456)
Q Consensus       422 ~I~~~~~i~  430 (456)
                      .|++++.+.
T Consensus        84 ~i~~~~~v~   92 (109)
T cd04647          84 VVGAGSVVT   92 (109)
T ss_pred             EECCCCEEe
Confidence            666555555

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=98.86  E-value=2.2e-08  Score=80.94  Aligned_cols=16  Identities=19%  Similarity=0.270  Sum_probs=9.5

Q ss_pred             eEECCCCEECCCcEEe
Q 012817          381 SVIGRHCRIGSNVKVV  396 (456)
Q Consensus       381 s~Ig~~~~ig~~~~i~  396 (456)
                      ..||++|.|++++.|.
T Consensus        24 i~IG~~~~I~~~~~I~   39 (107)
T cd05825          24 VTIGSDACISQGAYLC   39 (107)
T ss_pred             eEECCCCEECCCeEee
Confidence            3566666666666553

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=98.86  E-value=2.2e-08  Score=75.69  Aligned_cols=32  Identities=28%  Similarity=0.520  Sum_probs=16.6

Q ss_pred             CCCCEECCCCeEee-eEECCCCEECCCcEEeCe
Q 012817          367 GEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNS  398 (456)
Q Consensus       367 ~~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~~s  398 (456)
                      +++|.|++++.|.+ +.||++|.|++++.|.++
T Consensus         4 g~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~   36 (78)
T cd00208           4 GEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAA   36 (78)
T ss_pred             CCCeEECCCCEEeCcEEECCCCEECCCCEEEec
Confidence            33333333333332 566666666666666643

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=98.85  E-value=4.5e-09  Score=97.52  Aligned_cols=90  Identities=18%  Similarity=0.268  Sum_probs=68.3

Q ss_pred             cCCCcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEc-C
Q 012817          336 LSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-G  414 (456)
Q Consensus       336 ~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~  414 (456)
                      +.+.....+...++.++.|++++.||++|.|+++      ++|.+|+|-.+..++.++.|..|+++.+++||.+++|. +
T Consensus       261 i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~g------V~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~  334 (371)
T KOG1322|consen  261 IVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDG------VRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKN  334 (371)
T ss_pred             ccccEeeccccccCCccEECCCceECCCcEecCc------eEEEeeEEEccceechhHHHHhhhccccccccCceEEecc
Confidence            3333344455566777888888888877766554      55566788888999999999999999999999999886 8


Q ss_pred             eEECCCCEECCCcEecC
Q 012817          415 SVICSNAQLQERVALKD  431 (456)
Q Consensus       415 ~ii~~~~~I~~~~~i~~  431 (456)
                      |+||++|.|.+.-.+.+
T Consensus       335 a~lG~nV~V~d~~~vn~  351 (371)
T KOG1322|consen  335 AVLGKNVIVADEDYVNE  351 (371)
T ss_pred             cEeccceEEeccccccc
Confidence            88888888876666543

>PRK10191 putative acyl transferase; Provisional

Probab=98.84  E-value=2.7e-08  Score=84.53  Aligned_cols=82  Identities=18%  Similarity=0.300  Sum_probs=43.6

Q ss_pred             ceeCCCCEeCC--CcEECCCCEECCCCEECCCCeEe--------eeEECCCCEECCCcEEe-CeEECCCCEECCCcEEcC
Q 012817          346 NIIHPSAELGS--KTTVGPHCMLGEGSQMGDKCSVK--------RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQG  414 (456)
Q Consensus       346 ~~i~~~~~i~~--~~~i~~~~~i~~~~~I~~~~~i~--------~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~~  414 (456)
                      +.+++++.|++  ++.|++++.||++|.|+++++|+        .+.||++|.||+++.+. ++.|++++.||.++.+.+
T Consensus        48 a~Ig~~~~I~~g~~i~I~~~~~IGd~~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V~~  127 (146)
T PRK10191         48 ATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNNVTVGAGSVVLD  127 (146)
T ss_pred             CEECCCeEECCCCeEEECCCcEECCCCEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCCCEECCCCEECC
Confidence            33444444433  33444444444444444444443        14667777777766666 566666666666666665


Q ss_pred             eEECCCCEECCCc
Q 012817          415 SVICSNAQLQERV  427 (456)
Q Consensus       415 ~ii~~~~~I~~~~  427 (456)
                      .+......+|..+
T Consensus       128 dv~~~~~v~G~pA  140 (146)
T PRK10191        128 SVPDNALVVGEKA  140 (146)
T ss_pred             ccCCCcEEEccCc
Confidence            5555445555444

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=98.84  E-value=2.8e-08  Score=79.48  Aligned_cols=83  Identities=19%  Similarity=0.314  Sum_probs=52.2

Q ss_pred             EECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcE---EcCeEECCCCEECCCcEec-CeEE
Q 012817          359 TVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCS---IQGSVICSNAQLQERVALK-DCQV  434 (456)
Q Consensus       359 ~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~---i~~~ii~~~~~I~~~~~i~-~~~i  434 (456)
                      .|++++.|++++.|+.+.   .++|++++.||+++.|     ++++.|+.++.   ++.++|++++.|+.++.+. ++.|
T Consensus         4 ~i~~~~~ig~~~~i~~~~---~~~ig~~~~Ig~~~~i-----~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~I   75 (101)
T cd03354           4 DIHPGAKIGPGLFIDHGT---GIVIGETAVIGDNCTI-----YQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITI   75 (101)
T ss_pred             EeCCCCEECCCEEECCCC---eEEECCCCEECCCCEE-----cCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEE
Confidence            444444444444444321   2355666666655554     55666666664   5678888888888888775 4778


Q ss_pred             CCCCEECCCcEEcCC
Q 012817          435 GQGYVVSAGCEYKGE  449 (456)
Q Consensus       435 ~~~~~v~~~~~~~~~  449 (456)
                      ++++.|++++.+...
T Consensus        76 g~~~~i~~~~~i~~~   90 (101)
T cd03354          76 GDNVKIGANAVVTKD   90 (101)
T ss_pred             CCCCEECCCCEECcc
Confidence            888888888777653

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=98.84  E-value=4.6e-08  Score=87.82  Aligned_cols=68  Identities=18%  Similarity=0.280  Sum_probs=38.3

Q ss_pred             eEECCCCEECCCcEEe---CeEECCCCEECCCcEEc----------------------------CeEECCCCEECCCcEe
Q 012817          381 SVIGRHCRIGSNVKVV---NSVVMNHVTIGDGCSIQ----------------------------GSVICSNAQLQERVAL  429 (456)
Q Consensus       381 s~Ig~~~~ig~~~~i~---~s~i~~~~~ig~~~~i~----------------------------~~ii~~~~~I~~~~~i  429 (456)
                      ..||++|.|++++.|.   +..|+++|.||.++.|.                            .++|+++|.||.++.|
T Consensus        66 i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~i  145 (192)
T PRK09677         66 LFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVTI  145 (192)
T ss_pred             EEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhhcccccCCeEEcCCcEECCCCEE
Confidence            3555555555555554   34555555555555553                            1346666666666655


Q ss_pred             c-CeEECCCCEECCCcEEcC
Q 012817          430 K-DCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       430 ~-~~~i~~~~~v~~~~~~~~  448 (456)
                      . +++||++++|++++.+..
T Consensus       146 ~~g~~Ig~~~~Iga~s~v~~  165 (192)
T PRK09677        146 LPGVSIGNGCIVGANSVVTK  165 (192)
T ss_pred             cCCCEECCCCEECCCCEECc
Confidence            3 566666666666665543

>TIGR01172 cysE serine O-acetyltransferase

Probab=98.84  E-value=3.8e-08  Score=85.77  Aligned_cols=34  Identities=9%  Similarity=0.123  Sum_probs=17.0

Q ss_pred             CeEECCCCEECCCcEec-CeEECCCCEECCCcEEc
Q 012817          414 GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK  447 (456)
Q Consensus       414 ~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~  447 (456)
                      .++|+++|.|+++++|. +++||+++.|++++.+.
T Consensus       113 ~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~  147 (162)
T TIGR01172       113 HPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVL  147 (162)
T ss_pred             CCEECCCcEEcCCCEEECCcEECCCCEECCCCEEC
Confidence            34555555555555442 35555555555555443

Cysteine biosynthesis

>PLN02739 serine acetyltransferase

Probab=98.81  E-value=2.6e-08  Score=94.75  Aligned_cols=90  Identities=20%  Similarity=0.251  Sum_probs=57.6

Q ss_pred             CceeCCCCEeCCCcEEC--CCCEECCCCEECCCCeEeeeEECCCCEECCCcE---EeCeEECCCCEECCCcEE-cCeEEC
Q 012817          345 NNIIHPSAELGSKTTVG--PHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVK---VVNSVVMNHVTIGDGCSI-QGSVIC  418 (456)
Q Consensus       345 ~~~i~~~~~i~~~~~i~--~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~---i~~s~i~~~~~ig~~~~i-~~~ii~  418 (456)
                      ..-|+|.+.||.++.|.  .+++||++|.||++|     .|.++|+||....   -++.+|+++|.||.++.| +++.||
T Consensus       205 GidI~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv-----~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IG  279 (355)
T PLN02739        205 GIDIHPAARIGKGILLDHGTGVVIGETAVIGDRV-----SILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIG  279 (355)
T ss_pred             CcccCCCccccCceEEecCCceEECCCCEECCCC-----EEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEEC
Confidence            55567777777777764  356666666666655     4445555543211   024678888888888888 478888


Q ss_pred             CCCEECCCcEecCeEECCCCEE
Q 012817          419 SNAQLQERVALKDCQVGQGYVV  440 (456)
Q Consensus       419 ~~~~I~~~~~i~~~~i~~~~~v  440 (456)
                      +++.||+|++|..- |.+++++
T Consensus       280 d~aiIGAGSVV~kD-VP~~stv  300 (355)
T PLN02739        280 AGAMVAAGSLVLKD-VPSHSMV  300 (355)
T ss_pred             CCCEECCCCEECCC-CCCCcEE
Confidence            88888888877643 3444443

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=98.80  E-value=4.8e-08  Score=79.20  Aligned_cols=86  Identities=23%  Similarity=0.382  Sum_probs=48.6

Q ss_pred             EECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCe---EECCCCEECCCcEEcCeEECCCCEECCCcEe-cCeEE
Q 012817          359 TVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNS---VVMNHVTIGDGCSIQGSVICSNAQLQERVAL-KDCQV  434 (456)
Q Consensus       359 ~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s---~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i-~~~~i  434 (456)
                      .|++++.|++++.|...   .++.||++|.|+++|.|.++   .++.++.+........++|++++.|++++.+ .++.|
T Consensus         3 ~Ig~~~~I~~~~~i~~~---~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~i   79 (109)
T cd04647           3 SIGDNVYIGPGCVISAG---GGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTI   79 (109)
T ss_pred             EECCCcEECCCCEEecC---CceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEE
Confidence            34444444444444331   13577888888888887743   3333333333344456666666666666665 46666


Q ss_pred             CCCCEECCCcEEc
Q 012817          435 GQGYVVSAGCEYK  447 (456)
Q Consensus       435 ~~~~~v~~~~~~~  447 (456)
                      ++++.+++++.+.
T Consensus        80 g~~~~i~~~~~v~   92 (109)
T cd04647          80 GDGAVVGAGSVVT   92 (109)
T ss_pred             CCCCEECCCCEEe
Confidence            6666666666655

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=98.78  E-value=6e-08  Score=87.13  Aligned_cols=32  Identities=25%  Similarity=0.327  Sum_probs=13.3

Q ss_pred             EECCCCEECCCcEEc-CeEECCCCEECCCcEec
Q 012817          399 VVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK  430 (456)
Q Consensus       399 ~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~  430 (456)
                      +|+++|.||.++.|. ++.||+++.|+++++|.
T Consensus       133 ~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~  165 (203)
T PRK09527        133 TIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVT  165 (203)
T ss_pred             EECCCcEECCCCEEcCCCEECCCCEECCCCEEc
Confidence            334444444444443 34444444444444443

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=98.76  E-value=6.5e-08  Score=73.11  Aligned_cols=32  Identities=13%  Similarity=0.329  Sum_probs=14.8

Q ss_pred             eCCCCEeCCCcEECCCCEECCCCEECCCCeEe
Q 012817          348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK  379 (456)
Q Consensus       348 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~  379 (456)
                      +++++.|++++.+++++.||++|.|++++.|.
T Consensus         3 ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~   34 (78)
T cd00208           3 IGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIG   34 (78)
T ss_pred             ECCCeEECCCCEEeCcEEECCCCEECCCCEEE
Confidence            34444444444444444445554444444443

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes

Probab=98.75  E-value=1.2e-08  Score=96.17  Aligned_cols=64  Identities=22%  Similarity=0.289  Sum_probs=48.7

Q ss_pred             eEEEEecCCCCCCcCCCCCCCcccccccC---CcchHHHHHHHHHHC--------CCCEEEEEecCchhhHHHHhhhhhh
Q 012817            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELS--------NIKDLIVVVEGADAALRVGGWISAA   72 (456)
Q Consensus         4 ~aiIlagG~g~rl~pl~~~~~pK~llpi~---gkpli~~~l~~l~~~--------gi~~v~iv~~~~~~~~~i~~~~~~~   72 (456)
                      -+|+||||.|+||    +...||+|+|++   |+|+|++.++++...        ++..+++.+.+  ..+.+.+++.+.
T Consensus         2 a~viLaGG~GtRL----g~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~--t~~~t~~~l~~~   75 (266)
T cd04180           2 AVVLLAGGLGTRL----GKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKY--THEKTQCYFEKI   75 (266)
T ss_pred             EEEEECCCCcccc----CCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCch--hHHHHHHHHHHc
Confidence            3799999999999    788999999999   999999999999762        34444444432  234677777664


Q ss_pred             c
Q 012817           73 Y   73 (456)
Q Consensus        73 ~   73 (456)
                      .
T Consensus        76 ~   76 (266)
T cd04180          76 N   76 (266)
T ss_pred             C
Confidence            4

This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o

>PLN02739 serine acetyltransferase

Probab=98.74  E-value=4.3e-08  Score=93.26  Aligned_cols=35  Identities=11%  Similarity=0.212  Sum_probs=15.9

Q ss_pred             CCceeCCCCEeC--CCcEECCCCEECCCCEECCCCeE
Q 012817          344 QNNIIHPSAELG--SKTTVGPHCMLGEGSQMGDKCSV  378 (456)
Q Consensus       344 ~~~~i~~~~~i~--~~~~i~~~~~i~~~~~I~~~~~i  378 (456)
                      +.+.|+++..|.  .++.||+++.||++|.|..+++|
T Consensus       210 p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I~~gVTI  246 (355)
T PLN02739        210 PAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTL  246 (355)
T ss_pred             CCccccCceEEecCCceEECCCCEECCCCEEcCCcee
Confidence            344444444442  24444444444444444444444

>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2

Probab=98.69  E-value=1.4e-07  Score=86.62  Aligned_cols=112  Identities=20%  Similarity=0.329  Sum_probs=75.2

Q ss_pred             EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccceEEEE
Q 012817            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT   83 (456)
Q Consensus         5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~   83 (456)
                      |||+|.+.++|+       ..|.|.+++|||||+|+++++.+++ +++|+|.+.+.+.    .+.+.+.   .  ..+..
T Consensus         2 aiIpAR~gS~rl-------p~Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~~~i----~~~~~~~---g--~~v~~   65 (217)
T PF02348_consen    2 AIIPARGGSKRL-------PGKNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDDEEI----DDIAEEY---G--AKVIF   65 (217)
T ss_dssp             EEEEE-SSSSSS-------TTGGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESSHHH----HHHHHHT---T--SEEEE
T ss_pred             EEEecCCCCCCC-------CcchhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCCHHH----HHHHHHc---C--CeeEE
Confidence            899999999999       6799999999999999999999986 7899999886543    3333222   1  23333


Q ss_pred             ccCCc-ChHHHHHHHHhcC---CCCcEEEEcCC--cccCCChhHHHHHHHhcCce
Q 012817           84 VPEDV-GTAGALRAIAHHL---TAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAV  132 (456)
Q Consensus        84 ~~~~~-gt~~al~~~~~~l---~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~  132 (456)
                      .++.. ........+....   ..+.++.+.||  ++....+..+++.+.+...+
T Consensus        66 ~~~~~~~~~~r~~~~~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~  120 (217)
T PF02348_consen   66 RRGSLADDTDRFIEAIKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANED  120 (217)
T ss_dssp             --TTSSSHHHHHHHHHHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred             cChhhcCCcccHHHHHHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence            33332 2223333333322   22368888889  56666899999999988765

7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=98.69  E-value=9.3e-08  Score=83.01  Aligned_cols=85  Identities=25%  Similarity=0.314  Sum_probs=58.2

Q ss_pred             CCceeCCCCEeCCCcEECC--CCEECCCCEECCCCeEeeeEECCCCEECCCcEE---eCeEECCCCEECCCcEE-cCeEE
Q 012817          344 QNNIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKV---VNSVVMNHVTIGDGCSI-QGSVI  417 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i---~~s~i~~~~~ig~~~~i-~~~ii  417 (456)
                      ...-|+|.|.||++..|..  +++||+.+.||++|     .|.++++||..-.=   ++-.|+++|.||.++.| ++-.|
T Consensus        66 ~gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv-----~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~I  140 (194)
T COG1045          66 FGIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDV-----TIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEI  140 (194)
T ss_pred             cceeeCCCCeECCceEEcCCceEEEcceeEECCCe-----EEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEE
Confidence            3566778888877777743  55677777666666     44555555442211   23478889999998888 58889


Q ss_pred             CCCCEECCCcEecCeE
Q 012817          418 CSNAQLQERVALKDCQ  433 (456)
Q Consensus       418 ~~~~~I~~~~~i~~~~  433 (456)
                      |+++.||+++++-+.+
T Consensus       141 Gd~akIGA~sVVlkdV  156 (194)
T COG1045         141 GDNAKIGAGSVVLKDV  156 (194)
T ss_pred             CCCCEECCCceEccCC
Confidence            9999999998875543

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=98.68  E-value=6e-08  Score=88.11  Aligned_cols=50  Identities=14%  Similarity=0.391  Sum_probs=30.5

Q ss_pred             eEECCCCEECCCcEEeC---------eEECCCCEECCCc-EEcCeEECCCCEECCCcEec
Q 012817          381 SVIGRHCRIGSNVKVVN---------SVVMNHVTIGDGC-SIQGSVICSNAQLQERVALK  430 (456)
Q Consensus       381 s~Ig~~~~ig~~~~i~~---------s~i~~~~~ig~~~-~i~~~ii~~~~~I~~~~~i~  430 (456)
                      ..||+||.||.++.|..         .+|++||.||.++ .+++++||++|+|++|++|.
T Consensus       157 a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~  216 (271)
T COG2171         157 AQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFIT  216 (271)
T ss_pred             EEECCCcccCCcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCCCcEEecceEEe
Confidence            46777777777776643         3556666666665 33466666666666666553

>PLN02357 serine acetyltransferase

Probab=98.65  E-value=1.7e-07  Score=90.05  Aligned_cols=86  Identities=15%  Similarity=0.220  Sum_probs=48.4

Q ss_pred             cCCCceeCCCCEeCC--CcEECCCCEECCCCEECCCCeEe---------eeEECCCCEECCCcEEe-CeEECCCCEECCC
Q 012817          342 SAQNNIIHPSAELGS--KTTVGPHCMLGEGSQMGDKCSVK---------RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDG  409 (456)
Q Consensus       342 ~~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~I~~~~~i~---------~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~  409 (456)
                      +++.+.|++++.|..  ++.||+++.||++|.|..+++|+         +++||++|.||.++.|. +..|++++.||.+
T Consensus       229 I~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdga~IGAg  308 (360)
T PLN02357        229 IHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGAG  308 (360)
T ss_pred             eCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCCCEECCC
Confidence            445555555555543  44555555555555555555553         25666666666666654 5556666666666


Q ss_pred             cEEcCeEECCCCEECCCc
Q 012817          410 CSIQGSVICSNAQLQERV  427 (456)
Q Consensus       410 ~~i~~~ii~~~~~I~~~~  427 (456)
                      +.|.+.+....+++|.-+
T Consensus       309 SVV~~dVP~~~~v~G~PA  326 (360)
T PLN02357        309 SVVLKDVPPRTTAVGNPA  326 (360)
T ss_pred             CEECcccCCCcEEECCCe
Confidence            666554444444444444

>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]

Probab=98.63  E-value=4.5e-08  Score=79.38  Aligned_cols=97  Identities=13%  Similarity=0.201  Sum_probs=70.0

Q ss_pred             CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-------------eeEECCCCEECCCcEEeCeEECCCCEECCCc
Q 012817          344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-------------RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGC  410 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-------------~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~  410 (456)
                      ...++..++.|..+.   .++.+|..|+++..+.|+             +..||+++.|+++|++..+.|+..|.+|.++
T Consensus        38 GKtIv~~g~iIRGDL---AnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~Gkna  114 (184)
T KOG3121|consen   38 GKTIVEEGVIIRGDL---ANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGKNA  114 (184)
T ss_pred             CcEEEeeCcEEeccc---ccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEeccce
Confidence            455556666554322   345555555555555553             3589999999999999999999999999999


Q ss_pred             EEc-CeEECCCCEECCCcEec-CeEECCCCEECCC
Q 012817          411 SIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAG  443 (456)
Q Consensus       411 ~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~  443 (456)
                      .|+ +|++-+.|+|-+++++. .+++.+.+.++.+
T Consensus       115 viGrrCVlkdCc~ild~tVlPpet~vppy~~~~g~  149 (184)
T KOG3121|consen  115 VIGRRCVLKDCCRILDDTVLPPETLVPPYSTIGGN  149 (184)
T ss_pred             eEcCceEhhhheeccCCcccCcccccCCceEEcCC
Confidence            997 88888888888777775 5666666666544

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=98.60  E-value=7.5e-07  Score=71.96  Aligned_cols=35  Identities=14%  Similarity=0.131  Sum_probs=17.9

Q ss_pred             CeEECCCCEECCCcEEc-CeEECCCCEECCCcEecC
Q 012817          397 NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKD  431 (456)
Q Consensus       397 ~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~~  431 (456)
                      ...|+++|.||.++.|. ++.|++++.|++++.+.+
T Consensus        56 ~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v~~   91 (107)
T cd05825          56 PIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVR   91 (107)
T ss_pred             CEEECCCCEECCCCEECCCCEECCCCEECCCCEEeC
Confidence            34455555555555553 455555555555555443

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=98.60  E-value=4.1e-07  Score=80.68  Aligned_cols=96  Identities=16%  Similarity=0.134  Sum_probs=52.0

Q ss_pred             CCceeCCCCEeCCCcEECCCC--EECCCCEECCCCeEee-eEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-CeEEC
Q 012817          344 QNNIIHPSAELGSKTTVGPHC--MLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVIC  418 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~~~--~i~~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~~ii~  418 (456)
                      .+..|++.+.|+.++.|++.+  .||++|.|+++|.|.. ....+......+..+. ...|+++|.||.+|.|. ++.||
T Consensus        72 ~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG  151 (183)
T PRK10092         72 YNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIG  151 (183)
T ss_pred             CCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECCCCEEC
Confidence            455555555555555554443  5666666666665531 1111111111223332 55567777777777775 67777


Q ss_pred             CCCEECCCcEecCeEECCCCEE
Q 012817          419 SNAQLQERVALKDCQVGQGYVV  440 (456)
Q Consensus       419 ~~~~I~~~~~i~~~~i~~~~~v  440 (456)
                      ++++|++++++... |.+++++
T Consensus       152 ~~~vIgagsvV~~d-i~~~~i~  172 (183)
T PRK10092        152 DNVVVASGAVVTKD-VPDNVVV  172 (183)
T ss_pred             CCCEECCCCEEccc-cCCCcEE
Confidence            77777777776543 3455444

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=98.59  E-value=4.4e-07  Score=79.79  Aligned_cols=36  Identities=22%  Similarity=0.267  Sum_probs=20.1

Q ss_pred             CeEECCCCEECCCcEEc-CeEECCCCEECCCcEecCe
Q 012817          397 NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDC  432 (456)
Q Consensus       397 ~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~~~  432 (456)
                      +++|+++|.||.++.|. ++.|+++|.||+++++.+.
T Consensus       118 ~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~~  154 (169)
T cd03357         118 PITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKD  154 (169)
T ss_pred             CcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEccc
Confidence            44455555555555553 5556666666666655543

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=98.58  E-value=3e-07  Score=79.89  Aligned_cols=83  Identities=16%  Similarity=0.257  Sum_probs=40.3

Q ss_pred             cCCCceeCCCCEeC--CCcEECCCCEECCCCEECCCCeEee---------eEECCCCEECCCcEEe-CeEECCCCEECCC
Q 012817          342 SAQNNIIHPSAELG--SKTTVGPHCMLGEGSQMGDKCSVKR---------SVIGRHCRIGSNVKVV-NSVVMNHVTIGDG  409 (456)
Q Consensus       342 ~~~~~~i~~~~~i~--~~~~i~~~~~i~~~~~I~~~~~i~~---------s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~  409 (456)
                      +++.+.|+++..|.  .++.||+.+.||++|.|..+++|+.         -.||+++.||.+++|= +-.|++++.||.+
T Consensus        70 Ihp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~akIGA~  149 (194)
T COG1045          70 IHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNAKIGAG  149 (194)
T ss_pred             eCCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCCCEECCC
Confidence            34455555555553  3345555555555555555555542         2555555555555543 3334444444444


Q ss_pred             cEEcCeEECCCCEEC
Q 012817          410 CSIQGSVICSNAQLQ  424 (456)
Q Consensus       410 ~~i~~~ii~~~~~I~  424 (456)
                      +++-..+-.+-+++|
T Consensus       150 sVVlkdVP~~~tvvG  164 (194)
T COG1045         150 SVVLKDVPPNATVVG  164 (194)
T ss_pred             ceEccCCCCCceEec
Confidence            444444333333333

>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]

Probab=98.50  E-value=1.6e-07  Score=76.24  Aligned_cols=88  Identities=19%  Similarity=0.319  Sum_probs=50.2

Q ss_pred             CCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCe-------------EECCCCEECCCcEEcCeEECCCCEECCCcE
Q 012817          362 PHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNS-------------VVMNHVTIGDGCSIQGSVICSNAQLQERVA  428 (456)
Q Consensus       362 ~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s-------------~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~  428 (456)
                      +.+++.++|.|..+  +-+..||+.|.+++++.|+.+             .|+++|.|+++|.+.-+.|+..+.+|.+++
T Consensus        38 GKtIv~~g~iIRGD--LAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~Gknav  115 (184)
T KOG3121|consen   38 GKTIVEEGVIIRGD--LANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGKNAV  115 (184)
T ss_pred             CcEEEeeCcEEecc--cccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEecccee
Confidence            33444444444321  234577777777777777643             688999999999987555555555555544


Q ss_pred             ec-CeEECCCCEECCCcEEcCCee
Q 012817          429 LK-DCQVGQGYVVSAGCEYKGESL  451 (456)
Q Consensus       429 i~-~~~i~~~~~v~~~~~~~~~~~  451 (456)
                      |. +|++.+-+.|-+++++--..+
T Consensus       116 iGrrCVlkdCc~ild~tVlPpet~  139 (184)
T KOG3121|consen  116 IGRRCVLKDCCRILDDTVLPPETL  139 (184)
T ss_pred             EcCceEhhhheeccCCcccCcccc
Confidence            43 344444444444444333333

>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc

Probab=98.49  E-value=8.5e-06  Score=78.84  Aligned_cols=133  Identities=19%  Similarity=0.222  Sum_probs=82.5

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccC---CcchHHHHHHHHHHCC-----------CCEEEEEecCchhhHHHHh
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELSN-----------IKDLIVVVEGADAALRVGG   67 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~---gkpli~~~l~~l~~~g-----------i~~v~iv~~~~~~~~~i~~   67 (456)
                      ++.+||||||.|+||    +...||+|+|++   |+|++++.++++...+           .-.++|.++.. ..+.+.+
T Consensus        15 ~va~viLaGG~GTRL----g~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~-t~~~t~~   89 (323)
T cd04193          15 KVAVLLLAGGQGTRL----GFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEA-THEETRK   89 (323)
T ss_pred             CEEEEEECCCccccc----CCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChh-HhHHHHH
Confidence            467899999999999    888999999998   7999999999997742           12345666533 2346777


Q ss_pred             hhhhhcc---CccceEEEEccC---------------------CcChHHHHHHHH-----hcC---CCCcEEEEcCCc-c
Q 012817           68 WISAAYV---DRLHVEVATVPE---------------------DVGTAGALRAIA-----HHL---TAKDVLVVSGDL-V  114 (456)
Q Consensus        68 ~~~~~~~---~~~~i~~~~~~~---------------------~~gt~~al~~~~-----~~l---~~~~~lv~~~D~-i  114 (456)
                      ++.+...   .+-.+.+..|+.                     +.|.++......     +.+   .-+++.+..-|. +
T Consensus        90 ~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L  169 (323)
T cd04193          90 FFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNIL  169 (323)
T ss_pred             HHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCccc
Confidence            7765221   111233332211                     235544333221     222   235677777785 3


Q ss_pred             cCCChhHHHHHHHhcCceEEEEEee
Q 012817          115 SDVPPGAVTAAHRRHDAVVTAMICS  139 (456)
Q Consensus       115 ~~~~l~~~l~~~~~~~a~~t~~~~~  139 (456)
                      ....--.++-.+.+.++++..-+.+
T Consensus       170 ~~~~Dp~~lG~~~~~~~~~~~kvv~  194 (323)
T cd04193         170 VKVADPVFIGFCISKGADVGAKVVR  194 (323)
T ss_pred             ccccCHHHhHHHHHcCCceEEEEEE
Confidence            4333444777888888888765443

UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.

>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=98.44  E-value=2e-07  Score=76.37  Aligned_cols=103  Identities=17%  Similarity=0.214  Sum_probs=53.5

Q ss_pred             ceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe----eeEECCCCEECCCcEEeCe--------------EECCCCEEC
Q 012817          346 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKVVNS--------------VVMNHVTIG  407 (456)
Q Consensus       346 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~----~s~Ig~~~~ig~~~~i~~s--------------~i~~~~~ig  407 (456)
                      ..|.|+|.+...+.|.+++.|+++|++.+.+++.    +-+||+|+.|.+.+.|.|.              +|+.+....
T Consensus         9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFe   88 (190)
T KOG4042|consen    9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFE   88 (190)
T ss_pred             eeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEE
Confidence            4455666665555566666666666666666553    3567777777776666541              233333332


Q ss_pred             CCcEEcCeEECCCCEECCCcEec-CeEECCCCEECCCcEEcC
Q 012817          408 DGCSIQGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       408 ~~~~i~~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~  448 (456)
                      -+|...-..+|++-+|+..+++. ++.+.+|+.||++..+.+
T Consensus        89 Vgc~s~A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~  130 (190)
T KOG4042|consen   89 VGCKSSAKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFS  130 (190)
T ss_pred             eechhhhhhhcCcceEeeeeEecCCcEEcCCceeccceEEec
Confidence            23333333344444444444443 444555555555544443

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=98.44  E-value=1.3e-06  Score=74.53  Aligned_cols=43  Identities=26%  Similarity=0.329  Sum_probs=25.3

Q ss_pred             CeEECCCCEECCCcEEc-CeEECCCCEECCCcEecCeEECCCCEE
Q 012817          397 NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGYVV  440 (456)
Q Consensus       397 ~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~~~~i~~~~~v  440 (456)
                      +++|+++|.||.+|.|. ++.|++++.|+++++|... +.+++++
T Consensus        73 ~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~-v~~~~v~  116 (145)
T cd03349          73 DVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKD-VPPYAIV  116 (145)
T ss_pred             CcEECCCCEECCCCEEeCCCEECCCCEECCCCEEccc-cCCCeEE
Confidence            55666666666666663 6666666666666665543 3444433

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]

Probab=98.43  E-value=1.8e-06  Score=76.29  Aligned_cols=117  Identities=21%  Similarity=0.291  Sum_probs=82.5

Q ss_pred             CCceEEEEecC-CCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccc
Q 012817            1 MDFQVVVLAGG-TSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLH   78 (456)
Q Consensus         1 m~~~aiIlagG-~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~   78 (456)
                      |.|-++|+.+. .++||       ..|.|+|++++|||+++|+++.++. +++++|.++..+..+.+..++.+.     +
T Consensus         1 ~~~I~~IiQARmgStRL-------pgKvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~-----G   68 (241)
T COG1861           1 MSMILVIIQARMGSTRL-------PGKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSH-----G   68 (241)
T ss_pred             CCcEEEEeeecccCccC-------CcchhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHc-----C
Confidence            55656666554 45577       6799999999999999999999886 688999988554334566655442     1


Q ss_pred             eEEEEccCCcChH----HHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHHHHhcCceEE
Q 012817           79 VEVATVPEDVGTA----GALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVT  134 (456)
Q Consensus        79 i~~~~~~~~~gt~----~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t  134 (456)
                      ..+.     +|+.    +....+.+..+.+.++=+.||  ++.+.-++.+++.|.+.+++-+
T Consensus        69 ~~vf-----rGs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY~  125 (241)
T COG1861          69 FYVF-----RGSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADYV  125 (241)
T ss_pred             eeEe-----cCCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCccc
Confidence            2222     3443    333345666666678889999  5666678889999999998743

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=98.31  E-value=5.7e-06  Score=70.53  Aligned_cols=34  Identities=18%  Similarity=0.375  Sum_probs=16.9

Q ss_pred             CeEECCCCEECCCcEe-cCeEECCCCEECCCcEEc
Q 012817          414 GSVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYK  447 (456)
Q Consensus       414 ~~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~  447 (456)
                      +++|+++|.||.+++| .++.||++++|++++.+.
T Consensus        73 ~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~  107 (145)
T cd03349          73 DVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVT  107 (145)
T ss_pred             CcEECCCCEECCCCEEeCCCEECCCCEECCCCEEc
Confidence            4555555555555544 345555555555554433

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional

Probab=98.24  E-value=8e-05  Score=75.43  Aligned_cols=65  Identities=18%  Similarity=0.405  Sum_probs=49.4

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccC---CcchHHHHHHHHHHC------------C-CCEEEEEecCchhhHHH
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELS------------N-IKDLIVVVEGADAALRV   65 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~---gkpli~~~l~~l~~~------------g-i~~v~iv~~~~~~~~~i   65 (456)
                      ++.+||||||.|+||    +...||+|+|++   |||++++.++++...            + .-.++|.++... .+.+
T Consensus       106 kvavViLAGG~GTRL----g~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t-~~~t  180 (482)
T PTZ00339        106 EVAVLILAGGLGTRL----GSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFN-HDQT  180 (482)
T ss_pred             CeEEEEECCCCcCcC----CCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcch-HHHH
Confidence            467999999999999    678999999994   899999999999764            1 234566655332 3456


Q ss_pred             Hhhhhh
Q 012817           66 GGWISA   71 (456)
Q Consensus        66 ~~~~~~   71 (456)
                      ++++.+
T Consensus       181 ~~~f~~  186 (482)
T PTZ00339        181 RQFLEE  186 (482)
T ss_pred             HHHHHh
Confidence            666654

>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]

Probab=98.21  E-value=1.9e-06  Score=75.83  Aligned_cols=80  Identities=23%  Similarity=0.350  Sum_probs=40.2

Q ss_pred             CceeCCCCEeCCCcEECC--CCEECCCCEECCCCeEeeeEECCCCEECCC-cEE--eCeEECCCCEECCCcEE-cCeEEC
Q 012817          345 NNIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIGSN-VKV--VNSVVMNHVTIGDGCSI-QGSVIC  418 (456)
Q Consensus       345 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~-~~i--~~s~i~~~~~ig~~~~i-~~~ii~  418 (456)
                      ..-|+|.+.||.+..+..  +++||+-++||+++     .|.+++.+|.. -..  ++-.|++||-||.++.| +|.-||
T Consensus       148 gvdihpaa~ig~gilldhatgvvigeTAvvg~~v-----SilH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgnV~IG  222 (269)
T KOG4750|consen  148 GVDIHPAAKIGKGILLDHATGVVIGETAVVGDNV-----SILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGNVTIG  222 (269)
T ss_pred             cccccchhhcccceeeccccceeecceeEeccce-----eeecceeeccccccccccCCcccCCeEEccccEEeCCeeEC
Confidence            344667777666655532  34444444444443     44444444431 111  12255666666655554 355566


Q ss_pred             CCCEECCCcEe
Q 012817          419 SNAQLQERVAL  429 (456)
Q Consensus       419 ~~~~I~~~~~i  429 (456)
                      +|++|++|+++
T Consensus       223 egavIaAGsvV  233 (269)
T KOG4750|consen  223 EGAVIAAGSVV  233 (269)
T ss_pred             CCcEEeccceE
Confidence            66666666644

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=98.16  E-value=9.9e-06  Score=86.61  Aligned_cols=65  Identities=25%  Similarity=0.392  Sum_probs=30.9

Q ss_pred             EECCCCEECCCcEEeC------eEECCCCEECCCcEEc-CeEECCCCEECCCcEec-CeEECCCCEECCCcEE
Q 012817          382 VIGRHCRIGSNVKVVN------SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEY  446 (456)
Q Consensus       382 ~Ig~~~~ig~~~~i~~------s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~  446 (456)
                      .||++|.|+++|.|..      .+..++++||++|+|+ +|+|.++++||+++.|. ++++-+|..|.+++..
T Consensus       618 ~IGd~~~I~~~~~i~~h~~~~~~~~~~~v~IG~~~~IG~~a~V~~g~~IGd~a~Ig~~SvV~~g~~vp~~s~~  690 (695)
T TIGR02353       618 TIGDDSTLNEGSVIQTHLFEDRVMKSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGPDSLVMKGEEVPAHTRW  690 (695)
T ss_pred             EECCCCEECCCCEEEeccccccccccCCeEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcccCCCCEE
Confidence            5555555555555531      1223445555555554 55555555555443332 3444444444444443

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=98.11  E-value=2.5e-06  Score=69.98  Aligned_cols=100  Identities=13%  Similarity=0.181  Sum_probs=60.0

Q ss_pred             ccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEee--------------eEECCCCEECCCcEEeCeEECCCCEE
Q 012817          341 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR--------------SVIGRHCRIGSNVKVVNSVVMNHVTI  406 (456)
Q Consensus       341 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~--------------s~Ig~~~~ig~~~~i~~s~i~~~~~i  406 (456)
                      .+++.++++|.+++...+   ++.+||+|+.|++.+.|.|              -+||.+-...-+|......++++..|
T Consensus        28 ti~~gcVvHP~a~~iA~a---GPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvGd~NVi  104 (190)
T KOG4042|consen   28 TIKEGCVVHPFAVFIATA---GPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVGDRNVI  104 (190)
T ss_pred             EecCCcEecceEEEEccc---CCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhcCcceE
Confidence            445566666666654333   5777888888888877653              35555555544555444456666666


Q ss_pred             CCCcEEc-CeEECCCCEECCCcEecC-eEECCCCEECCC
Q 012817          407 GDGCSIQ-GSVICSNAQLQERVALKD-CQVGQGYVVSAG  443 (456)
Q Consensus       407 g~~~~i~-~~ii~~~~~I~~~~~i~~-~~i~~~~~v~~~  443 (456)
                      +..|.++ ++.+.++|.||+++.+.. -.+.+++.|-.-
T Consensus       105 eskayvg~gv~vssgC~vGA~c~v~~~q~lpent~vYga  143 (190)
T KOG4042|consen  105 ESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVYGA  143 (190)
T ss_pred             eeeeEecCCcEEcCCceeccceEEecccccCCcceEEcc
Confidence            6666665 666666666666655542 244555555433

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=98.09  E-value=1.2e-05  Score=86.06  Aligned_cols=31  Identities=26%  Similarity=0.305  Sum_probs=15.2

Q ss_pred             EECCCCEECCCcEEc-CeEECCCCEECCCcEe
Q 012817          399 VVMNHVTIGDGCSIQ-GSVICSNAQLQERVAL  429 (456)
Q Consensus       399 ~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i  429 (456)
                      +|+++|.||.+|.|. ++.|++++.|++++.+
T Consensus       162 ~IG~~~~IG~~s~I~~g~~Igd~a~vgagS~V  193 (695)
T TIGR02353       162 TLGRDAFIGTRSTLDIDTSIGDGAQLGHGSAL  193 (695)
T ss_pred             EECCCcEECCCCEEcCCCEECCCCEECCCCEe
Confidence            445555555555552 4555555555544444

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=98.03  E-value=3.9e-05  Score=68.80  Aligned_cols=85  Identities=21%  Similarity=0.302  Sum_probs=40.3

Q ss_pred             CCEECCCCEECCCCeEe---eeEECCCCEECCCcEEe-CeEECCCCEECCC--cEEcCeEECCCCEECCCcEe-cCeEEC
Q 012817          363 HCMLGEGSQMGDKCSVK---RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDG--CSIQGSVICSNAQLQERVAL-KDCQVG  435 (456)
Q Consensus       363 ~~~i~~~~~I~~~~~i~---~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~--~~i~~~ii~~~~~I~~~~~i-~~~~i~  435 (456)
                      +..+|.+|.++.++.+.   +..||.++.+++++.|. ++..++...-..+  ...+.++||++|.||.+++| .+++||
T Consensus        67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~IG  146 (190)
T COG0110          67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTIG  146 (190)
T ss_pred             ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCCEEEC
Confidence            33344444444444421   24577777777777765 3333322222111  11124555555555555544 345555


Q ss_pred             CCCEECCCcEEc
Q 012817          436 QGYVVSAGCEYK  447 (456)
Q Consensus       436 ~~~~v~~~~~~~  447 (456)
                      +|++|++++.+.
T Consensus       147 ~gavigagsVVt  158 (190)
T COG0110         147 EGAVIGAGSVVT  158 (190)
T ss_pred             CCcEEeeCCEEe
Confidence            555555555443

>PLN02474 UTP--glucose-1-phosphate uridylyltransferase

Probab=97.98  E-value=0.0031  Score=63.57  Aligned_cols=191  Identities=11%  Similarity=0.112  Sum_probs=101.8

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCccccccc-CCcchHHHHHHHHHH----CCCC-EEEEEecCchhhHHHHhhhhhhccCc
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPV-ANRPVLSYVLEQLEL----SNIK-DLIVVVEGADAALRVGGWISAAYVDR   76 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi-~gkpli~~~l~~l~~----~gi~-~v~iv~~~~~~~~~i~~~~~~~~~~~   76 (456)
                      +-+|.||||.||||    +...||.++|+ .|+++++..++++..    .|.. -.+|.++.. ..+...+++.++...+
T Consensus        80 ~avlkLnGGlGTrm----G~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~-T~~~T~~~l~k~~~~~  154 (469)
T PLN02474         80 LVVLKLNGGLGTTM----GCTGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFN-THDDTQKIVEKYTNSN  154 (469)
T ss_pred             EEEEEecCCccccc----CCCCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCc-hhHHHHHHHHHcCCCc
Confidence            45799999999999    88899999999 468998888877743    3433 224444322 2234455554432112


Q ss_pred             cceEEEEccC------------------------CcChHH---HHHHH--HhcC---CCCcEEEEcCCcccCCChhHHHH
Q 012817           77 LHVEVATVPE------------------------DVGTAG---ALRAI--AHHL---TAKDVLVVSGDLVSDVPPGAVTA  124 (456)
Q Consensus        77 ~~i~~~~~~~------------------------~~gt~~---al~~~--~~~l---~~~~~lv~~~D~i~~~~l~~~l~  124 (456)
                      .++.+..|..                        +-|-++   +|+..  ++.+   .-+++.+...|.+...-=-.++.
T Consensus       155 ~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~~lg  234 (469)
T PLN02474        155 IEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLKILN  234 (469)
T ss_pred             cceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHHHHH
Confidence            2222221110                        123332   22211  1222   23578888889754333334777


Q ss_pred             HHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCCcccEEEecCCCc-EEEEeecccccccccccchHHHhhcceeEE
Q 012817          125 AHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQ-FLLHIATGAELEKDTRIRKSILRAVGQMDI  203 (456)
Q Consensus       125 ~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~d~~~~-~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~  203 (456)
                      ++.+.++++++=+.+....+                ..-|.+.. .+|+ .++.+.+.++         ....... -..
T Consensus       235 ~~~~~~~e~~~ev~~Kt~~d----------------~kgG~l~~-~dgk~~lvEysqvp~---------e~~~~f~-~~~  287 (469)
T PLN02474        235 HLIQNKNEYCMEVTPKTLAD----------------VKGGTLIS-YEGKVQLLEIAQVPD---------EHVNEFK-SIE  287 (469)
T ss_pred             HHHhcCCceEEEEeecCCCC----------------CCccEEEE-ECCEEEEEEEecCCH---------HHHHhhc-ccc
Confidence            88888888765443322111                11244332 2233 3444443221         1110000 012


Q ss_pred             ecCCccceEEeechHHHHHHHh
Q 012817          204 RADLMDAHMYAFNRSVLQEVLD  225 (456)
Q Consensus       204 ~~~~~~~giYi~~~~vl~~~~~  225 (456)
                      ...+.|++.++|+-+.++.+++
T Consensus       288 kf~~fNtnn~w~~L~~l~~~~~  309 (469)
T PLN02474        288 KFKIFNTNNLWVNLKAIKRLVE  309 (469)
T ss_pred             cceeeeeeeEEEEHHHHHHHhh
Confidence            3456799999999999987764

>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]

Probab=97.88  E-value=2.9e-05  Score=68.52  Aligned_cols=33  Identities=27%  Similarity=0.420  Sum_probs=21.8

Q ss_pred             CeEECCCCEECCCcE-ecCeEECCCCEECCCcEE
Q 012817          414 GSVICSNAQLQERVA-LKDCQVGQGYVVSAGCEY  446 (456)
Q Consensus       414 ~~ii~~~~~I~~~~~-i~~~~i~~~~~v~~~~~~  446 (456)
                      .-.|++||.||.|+. +.+..||+|++|++|+.+
T Consensus       200 hP~Igd~vliGaGvtILgnV~IGegavIaAGsvV  233 (269)
T KOG4750|consen  200 HPKIGDNVLIGAGVTILGNVTIGEGAVIAAGSVV  233 (269)
T ss_pred             CCcccCCeEEccccEEeCCeeECCCcEEeccceE
Confidence            346777777777763 456777777777777654

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=97.81  E-value=8.7e-05  Score=66.51  Aligned_cols=35  Identities=23%  Similarity=0.279  Sum_probs=18.4

Q ss_pred             CeEECCCCEECCCcEEc-CeEECCCCEECCCcEecC
Q 012817          397 NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKD  431 (456)
Q Consensus       397 ~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~~  431 (456)
                      .++|+++|-||.++.|- +..||++++||+++++.+
T Consensus       124 ~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtk  159 (190)
T COG0110         124 PVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTK  159 (190)
T ss_pred             CeEECCCeEEcCccEECCCEEECCCcEEeeCCEEeC
Confidence            34555555555555553 455555555555555544

>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=97.72  E-value=0.00014  Score=64.52  Aligned_cols=96  Identities=16%  Similarity=0.118  Sum_probs=62.1

Q ss_pred             CCcccccccCC--cchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEEc-cCCcChHHHHHHHHh
Q 012817           23 EVPKALLPVAN--RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV-PEDVGTAGALRAIAH   99 (456)
Q Consensus        23 ~~pK~llpi~g--kpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~-~~~~gt~~al~~~~~   99 (456)
                      +.+|+|+++.|  +|||+|+++.+. ..+++++|+++...   ...    .     ..+.++.. ....|+..++..+++
T Consensus         2 G~dK~ll~~~g~~~~ll~~~~~~l~-~~~~~iivv~~~~~---~~~----~-----~~~~~i~d~~~g~gpl~~~~~gl~   68 (178)
T PRK00576          2 GRDKATLPLPGGTTTLVEHVVGIVG-QRCAPVFVMAAPGQ---PLP----E-----LPAPVLRDELRGLGPLPATGRGLR   68 (178)
T ss_pred             CCCCEeeEeCCCCcCHHHHHHHHHh-hcCCEEEEECCCCc---ccc----c-----CCCCEeccCCCCCCcHHHHHHHHH
Confidence            46899999999  999999999876 45899999987431   110    1     11233321 123566665554443


Q ss_pred             cC---CCCcEEEEcCC--cccCCChhHHHHHHHhcCc
Q 012817          100 HL---TAKDVLVVSGD--LVSDVPPGAVTAAHRRHDA  131 (456)
Q Consensus       100 ~l---~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a  131 (456)
                      ..   ..+.+++++||  ++....+..+++.+...++
T Consensus        69 ~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~~~~  105 (178)
T PRK00576         69 AAAEAGARLAFVCAVDMPYLTVELIDDLARPAAQTDA  105 (178)
T ss_pred             HHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhhcCCC
Confidence            22   34679999999  4555567777776544433

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=97.70  E-value=0.00014  Score=64.61  Aligned_cols=80  Identities=19%  Similarity=0.335  Sum_probs=50.4

Q ss_pred             CCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEc-CeEECCCCEECCCcEecC-eEECCCCEECCCcEE
Q 012817          369 GSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKD-CQVGQGYVVSAGCEY  446 (456)
Q Consensus       369 ~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~~-~~i~~~~~v~~~~~~  446 (456)
                      .+.||.++.++-.++++.+.+|+++.|...++..++.|+.+|.+. |.++++++.||.++.|.+ .++...--+++++.+
T Consensus        22 dViIG~nS~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~dV~I  101 (277)
T COG4801          22 DVIIGKNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADVII  101 (277)
T ss_pred             cEEEcccceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEecccccccceEE
Confidence            344455555555677777777777777777777777777777774 677777777777776653 233333334444444


Q ss_pred             cC
Q 012817          447 KG  448 (456)
Q Consensus       447 ~~  448 (456)
                      ++
T Consensus       102 eg  103 (277)
T COG4801         102 EG  103 (277)
T ss_pred             ec
Confidence            44

>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose

Probab=97.52  E-value=0.013  Score=55.99  Aligned_cols=191  Identities=13%  Similarity=0.125  Sum_probs=102.6

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccC-CcchHHHHHHHHHH----CCCC-EEEEEecCchhhHHHHhhhhhhccCc
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLEL----SNIK-DLIVVVEGADAALRVGGWISAAYVDR   76 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~-gkpli~~~l~~l~~----~gi~-~v~iv~~~~~~~~~i~~~~~~~~~~~   76 (456)
                      .-+|+||||.|+||    +...||.++|+. |+++++..++++..    .+.. -.+|.++.. ..+...+++.+.....
T Consensus         4 vavl~LaGG~GTRL----G~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~-T~~~T~~~l~~~~~~~   78 (300)
T cd00897           4 LVVLKLNGGLGTSM----GCTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFN-TDEDTKKILKKYAGVN   78 (300)
T ss_pred             EEEEEecCCccccc----CCCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCc-chHHHHHHHHHcCCCc
Confidence            45799999999999    888999999995 57999999988854    3432 344444433 2334555655432211


Q ss_pred             cceEEEEc--------------c---C-------CcChHHHHHHH-----HhcC---CCCcEEEEcCCcccCCChhHHHH
Q 012817           77 LHVEVATV--------------P---E-------DVGTAGALRAI-----AHHL---TAKDVLVVSGDLVSDVPPGAVTA  124 (456)
Q Consensus        77 ~~i~~~~~--------------~---~-------~~gt~~al~~~-----~~~l---~~~~~lv~~~D~i~~~~l~~~l~  124 (456)
                      ..+.+..|              +   .       +.|-++.....     ++.+   .-+++.+...|.+....=-.++-
T Consensus        79 ~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~lg  158 (300)
T cd00897          79 VDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRILN  158 (300)
T ss_pred             cCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHHHH
Confidence            12222111              0   0       12333322211     1111   23578888889754432233778


Q ss_pred             HHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCCcccEEEecCCCc-EEEEeecccccccccccchHHHhhcceeEE
Q 012817          125 AHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQ-FLLHIATGAELEKDTRIRKSILRAVGQMDI  203 (456)
Q Consensus       125 ~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~d~~~~-~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~  203 (456)
                      ++..+++++++=+.+..  .+.              +.-|++... +|+ .++.+.+.++         ....... -..
T Consensus       159 ~~~~~~~~~~~evv~Kt--~~d--------------ek~G~l~~~-~g~~~vvEyse~p~---------e~~~~~~-~~~  211 (300)
T cd00897         159 HMVDNKAEYIMEVTDKT--RAD--------------VKGGTLIQY-EGKLRLLEIAQVPK---------EHVDEFK-SIK  211 (300)
T ss_pred             HHHhcCCceEEEEeecC--CCC--------------CcccEEEEE-CCEEEEEEeccCCH---------HHHHhhc-Ccc
Confidence            88888888775333221  211              123444332 233 3444443221         1100000 011


Q ss_pred             ecCCccceEEeechHHHHHHHh
Q 012817          204 RADLMDAHMYAFNRSVLQEVLD  225 (456)
Q Consensus       204 ~~~~~~~giYi~~~~vl~~~~~  225 (456)
                      .....|++.++|+-+.|+.+++
T Consensus       212 ~~~~~nt~n~~~~l~~L~~~~~  233 (300)
T cd00897         212 KFKIFNTNNLWVNLKAVKRVVE  233 (300)
T ss_pred             cceEEEEeEEEEEHHHHHHHHH
Confidence            2446788999999998887753

UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=97.34  E-value=0.001  Score=59.21  Aligned_cols=95  Identities=20%  Similarity=0.355  Sum_probs=70.9

Q ss_pred             eCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-CeEECCCCEECC
Q 012817          348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQLQE  425 (456)
Q Consensus       348 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~  425 (456)
                      +...+.||+++.+. ..++++....|++++|...+++.+|.|+.+|.+. |.+...+..||+++.|+ .-++..+-.||+
T Consensus        19 v~gdViIG~nS~l~-~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~   97 (277)
T COG4801          19 VKGDVIIGKNSMLK-YGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGA   97 (277)
T ss_pred             EeccEEEcccceee-eeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEeccccccc
Confidence            33444444444442 2246677777888888888899999999999998 66678889999999996 677778888888


Q ss_pred             CcEecCeEECCCCEECCC
Q 012817          426 RVALKDCQVGQGYVVSAG  443 (456)
Q Consensus       426 ~~~i~~~~i~~~~~v~~~  443 (456)
                      .+.|++..+.+|-++-.+
T Consensus        98 dV~Ieggfva~g~Ivirn  115 (277)
T COG4801          98 DVIIEGGFVAKGWIVIRN  115 (277)
T ss_pred             ceEEecCeeecceEEEcC
Confidence            888888887777766443

>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A

Probab=97.08  E-value=0.00069  Score=41.97  Aligned_cols=9  Identities=56%  Similarity=1.158  Sum_probs=2.5

Q ss_pred             CCCCEECCC
Q 012817          384 GRHCRIGSN  392 (456)
Q Consensus       384 g~~~~ig~~  392 (456)
                      |++|.||.+
T Consensus         5 G~~~~ig~~   13 (34)
T PF14602_consen    5 GDNCFIGAN   13 (34)
T ss_dssp             -TTEEE-TT
T ss_pred             CCCEEECcc
Confidence            333333333

...

>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase

Probab=96.78  E-value=0.11  Score=52.87  Aligned_cols=194  Identities=11%  Similarity=0.100  Sum_probs=102.7

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccC---CcchHHHHHHHHHHC--------------CC-CEEEEEecCchhhHH
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELS--------------NI-KDLIVVVEGADAALR   64 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~---gkpli~~~l~~l~~~--------------gi-~~v~iv~~~~~~~~~   64 (456)
                      .-+|+||||.|+||    +...||.+++|+   ++++++...+++...              +. --.+|.++... .+.
T Consensus       117 vavvlLAGGqGTRL----G~~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T-~~~  191 (493)
T PLN02435        117 LAVVLLSGGQGTRL----GSSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFT-DEA  191 (493)
T ss_pred             EEEEEeCCCccccc----CCCCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcch-hHH
Confidence            34688899999999    888999999885   789999988886431              11 12355555332 235


Q ss_pred             HHhhhhhhc--c-CccceEEEEcc---------------------CCcChHHHHHHH-----HhcC---CCCcEEEEcCC
Q 012817           65 VGGWISAAY--V-DRLHVEVATVP---------------------EDVGTAGALRAI-----AHHL---TAKDVLVVSGD  112 (456)
Q Consensus        65 i~~~~~~~~--~-~~~~i~~~~~~---------------------~~~gt~~al~~~-----~~~l---~~~~~lv~~~D  112 (456)
                      ..+++.+..  . ..-++.+..|.                     .+.|.++.....     ++.+   .-+++.+..-|
T Consensus       192 T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vD  271 (493)
T PLN02435        192 TRKFFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVD  271 (493)
T ss_pred             HHHHHHhCCCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEecc
Confidence            566665421  1 11123333221                     123444433222     1222   12456666667


Q ss_pred             c-ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCCcccEEEe-cCCCc-EEEEeecccccccccc
Q 012817          113 L-VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGM-DPTKQ-FLLHIATGAELEKDTR  189 (456)
Q Consensus       113 ~-i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~-d~~~~-~l~~~~~~~~~~k~~~  189 (456)
                      . +....--.++-.+...++++..-+.+.  .+|.              +.-|++.. +.+++ .++.+.+..   +...
T Consensus       272 N~L~~~~DP~flG~~~~~~~d~~~kVv~K--~~~~--------------EkvG~i~~~~~~g~~~vvEYsEl~---~~~~  332 (493)
T PLN02435        272 NALVRVADPTFLGYFIDKGVASAAKVVRK--AYPQ--------------EKVGVFVRRGKGGPLTVVEYSELD---QAMA  332 (493)
T ss_pred             cccccccCHHHHHHHHhcCCceEEEeeec--CCCC--------------CceeEEEEecCCCCEEEEEeccCC---HHHH
Confidence            5 344444457778888888876643322  1221              12355543 33443 233443321   1100


Q ss_pred             cchHHHhhcceeEEecCCccceEEeechHHHHHHH
Q 012817          190 IRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL  224 (456)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~  224 (456)
                        ..  ....+........|..+++|+.++|+.+.
T Consensus       333 --~~--~~~~~g~L~~~~gnI~~h~fs~~fL~~~~  363 (493)
T PLN02435        333 --SA--INQQTGRLRYCWSNVCLHMFTLDFLNQVA  363 (493)
T ss_pred             --hc--cCccccccccchhhHHHhhccHHHHHHHH
Confidence              00  00001123455678888999999998774

>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional

Probab=96.72  E-value=0.0087  Score=65.47  Aligned_cols=62  Identities=21%  Similarity=0.162  Sum_probs=38.9

Q ss_pred             eEeeeEECCCCEECCCcE-EeCeEECCCCEECCCcEEcCeE-ECCCCEECCCcEecCeEECCCC
Q 012817          377 SVKRSVIGRHCRIGSNVK-VVNSVVMNHVTIGDGCSIQGSV-ICSNAQLQERVALKDCQVGQGY  438 (456)
Q Consensus       377 ~i~~s~Ig~~~~ig~~~~-i~~s~i~~~~~ig~~~~i~~~i-i~~~~~I~~~~~i~~~~i~~~~  438 (456)
                      .|.||++..++.+++++. |++|.|+.+++||++|.|.++- ...+..|.+++.|+..-++...
T Consensus       333 ~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv~~~~~~~~vP~~~ci~~vpl~~~~  396 (974)
T PRK13412        333 FVQNAVLSGKLTAENATLWIENSHVGEGWKLASRSIITGVPENSWNLDLPEGVCIDVVPVGDRG  396 (974)
T ss_pred             EEEeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEecccccccceecCCCcEEEEEEcCCCc
Confidence            455666677777777633 6677777777777777777664 3345666666666554444433

>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2

Probab=96.71  E-value=0.089  Score=52.89  Aligned_cols=132  Identities=19%  Similarity=0.241  Sum_probs=75.0

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccC-CcchHHHHHHHHHH----CCCC-EEEEEecCchhhHHHHhhhhhhccCc
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLEL----SNIK-DLIVVVEGADAALRVGGWISAAYVDR   76 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~-gkpli~~~l~~l~~----~gi~-~v~iv~~~~~~~~~i~~~~~~~~~~~   76 (456)
                      +-+|+||||.|+||    +...||.++|+. ++.+++..++++..    .+.. -.+|.++... .+..++++.+++...
T Consensus        57 vavl~LaGGlGTrl----G~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T-~~~T~~~l~kyfg~~  131 (420)
T PF01704_consen   57 VAVLKLAGGLGTRL----GCSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNT-HEDTRKFLEKYFGLD  131 (420)
T ss_dssp             EEEEEEEESBSGCC----TESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTT-HHHHHHHHHHGCGSS
T ss_pred             EEEEEEcCcccCcc----CCCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCccc-HHHHHHHHHHhcCCC
Confidence            45688999999999    888999999995 56788888877754    3432 3455555332 245566665533222


Q ss_pred             cceEEEEcc-----------------------C---CcChHHHHHHH-----HhcC---CCCcEEEEcCCcccCCChhHH
Q 012817           77 LHVEVATVP-----------------------E---DVGTAGALRAI-----AHHL---TAKDVLVVSGDLVSDVPPGAV  122 (456)
Q Consensus        77 ~~i~~~~~~-----------------------~---~~gt~~al~~~-----~~~l---~~~~~lv~~~D~i~~~~l~~~  122 (456)
                      ..+.+..|.                       .   +.|.++.....     ++.+   .-+++.+...|.+....=-.+
T Consensus       132 ~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp~~  211 (420)
T PF01704_consen  132 VDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDPVF  211 (420)
T ss_dssp             CCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-HHH
T ss_pred             cceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCHHH
Confidence            222222110                       0   11444322221     1111   236788888897554433347


Q ss_pred             HHHHHhcCceEEEEEee
Q 012817          123 TAAHRRHDAVVTAMICS  139 (456)
Q Consensus       123 l~~~~~~~a~~t~~~~~  139 (456)
                      +-.+.+.++++.+=+.+
T Consensus       212 lG~~~~~~~~~~~evv~  228 (420)
T PF01704_consen  212 LGYMIEKNADFGMEVVP  228 (420)
T ss_dssp             HHHHHHTT-SEEEEEEE
T ss_pred             HHHHHhccchhheeeee
Confidence            88888888887665554

7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....

>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC

Probab=96.55  E-value=0.009  Score=53.67  Aligned_cols=85  Identities=21%  Similarity=0.175  Sum_probs=59.7

Q ss_pred             CcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCCC--CcEEEEc
Q 012817           33 NRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA--KDVLVVS  110 (456)
Q Consensus        33 gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~~--~~~lv~~  110 (456)
                      -+|||+|+++.+..+++.+++++++..    .+..+...     .++.++..+ ..|...+++.+++++..  +.++++.
T Consensus        29 ~~~ll~~~l~~l~~~~~~~vvvv~~~~----~~~~~~~~-----~~v~~i~~~-~~G~~~si~~al~~~~~~~~~vlv~~   98 (195)
T TIGR03552        29 ALAMLRDVITALRGAGAGAVLVVSPDP----ALLEAARN-----LGAPVLRDP-GPGLNNALNAALAEAREPGGAVLILM   98 (195)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEECCCH----HHHHHHHh-----cCCEEEecC-CCCHHHHHHHHHHHhhccCCeEEEEe
Confidence            369999999999998878888887643    22222221     234454433 34899999998876643  3699999


Q ss_pred             CC--cccCCChhHHHHHHH
Q 012817          111 GD--LVSDVPPGAVTAAHR  127 (456)
Q Consensus       111 ~D--~i~~~~l~~~l~~~~  127 (456)
                      ||  ++....++.+++.+.
T Consensus        99 ~D~P~l~~~~i~~l~~~~~  117 (195)
T TIGR03552        99 ADLPLLTPRELKRLLAAAT  117 (195)
T ss_pred             CCCCCCCHHHHHHHHHhcc
Confidence            99  566778888888664

Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.

>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose

Probab=96.22  E-value=0.024  Score=54.45  Aligned_cols=62  Identities=21%  Similarity=0.317  Sum_probs=45.4

Q ss_pred             EEEEecCCCCCCcCCCCCCCccccccc---CCcchHHHHHHHHHHCC--------C-CEEEEEecCchhhHHHHhhhhh
Q 012817            5 VVVLAGGTSKKLVPLVSKEVPKALLPV---ANRPVLSYVLEQLELSN--------I-KDLIVVVEGADAALRVGGWISA   71 (456)
Q Consensus         5 aiIlagG~g~rl~pl~~~~~pK~llpi---~gkpli~~~l~~l~~~g--------i-~~v~iv~~~~~~~~~i~~~~~~   71 (456)
                      +|+||||.|+||    +...||.++|+   .|+++++...+++....        . --.+|.++... .+...+++.+
T Consensus         3 ~vllaGG~GTRL----G~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~T-h~~T~~~fe~   76 (315)
T cd06424           3 FVLVAGGLGERL----GYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDT-HSKTLKLLEE   76 (315)
T ss_pred             EEEecCCCcccc----CCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCch-hHHHHHHHHH
Confidence            689999999999    88999999999   48999999998885421        1 23455555432 3456666653

UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f

>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=96.19  E-value=0.31  Score=48.80  Aligned_cols=40  Identities=30%  Similarity=0.537  Sum_probs=35.0

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccC-CcchHHHHHHHHHH
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLEL   46 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~-gkpli~~~l~~l~~   46 (456)
                      +-+|+||||.|+||    +...||.+++|. |+++++.+.+.++.
T Consensus       106 lAvl~LaGGqGtrl----G~~gPKgl~~V~~gks~~dl~~~qIk~  146 (472)
T COG4284         106 LAVLKLAGGQGTRL----GCDGPKGLFEVKDGKSLFDLQAEQIKY  146 (472)
T ss_pred             eEEEEecCCccccc----ccCCCceeEEecCCCcHHHHHHHHHHH
Confidence            45799999999999    778999999999 89999998887753

>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []

Probab=96.03  E-value=0.015  Score=58.46  Aligned_cols=51  Identities=24%  Similarity=0.283  Sum_probs=41.9

Q ss_pred             CEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCC
Q 012817          370 SQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSN  420 (456)
Q Consensus       370 ~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~  420 (456)
                      +.+.+++.|.+|++..++.+|++++|++|.|..+++||++|.|.++-+...
T Consensus       274 ~~~~~~~~VinSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~~~~~  324 (414)
T PF07959_consen  274 SDSEASSCVINSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVDINSW  324 (414)
T ss_pred             cccCCCeeEEEeEecCCceECCCCEEEeeecCCCCEECCCCEEECCccccc
Confidence            445666788889999999999999999999999999999999987755443

; GO: 0016772 transferase activity, transferring phosphorus-containing groups

>PLN02830 UDP-sugar pyrophosphorylase

Probab=95.59  E-value=1  Score=47.57  Aligned_cols=131  Identities=15%  Similarity=0.100  Sum_probs=76.0

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCccccccc---CCcchHHHHHHHHHHC-----------CC-CEEEEEecCchhhHHHHh
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPV---ANRPVLSYVLEQLELS-----------NI-KDLIVVVEGADAALRVGG   67 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi---~gkpli~~~l~~l~~~-----------gi-~~v~iv~~~~~~~~~i~~   67 (456)
                      +-+|+||||.|+||    +...||.++|+   .|+++++..++++...           +. --.+|.++... .+...+
T Consensus       129 vavllLaGGlGTRL----G~~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T-~~~T~~  203 (615)
T PLN02830        129 AAFVLVAGGLGERL----GYSGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDT-HARTLK  203 (615)
T ss_pred             EEEEEecCCccccc----CCCCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcch-hHHHHH
Confidence            45789999999999    88899999997   3899999999987543           11 23455555332 235556


Q ss_pred             hhhhhc--c-CccceEEEEcc------------------C------CcChHHHHHHHHh------cC---CCCcEEEEcC
Q 012817           68 WISAAY--V-DRLHVEVATVP------------------E------DVGTAGALRAIAH------HL---TAKDVLVVSG  111 (456)
Q Consensus        68 ~~~~~~--~-~~~~i~~~~~~------------------~------~~gt~~al~~~~~------~l---~~~~~lv~~~  111 (456)
                      ++.+..  . ..-++.++.|.                  .      +.|-++ ++.++.      .+   .-+++.+..-
T Consensus       204 ~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGd-i~~aL~~sGlLd~l~~~G~~yi~v~~v  282 (615)
T PLN02830        204 LLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGD-VHALLYSSGLLDKWLSAGKKWVVFFQD  282 (615)
T ss_pred             HHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccH-HHHHHHHCCCHHHHHHcCCEEEEEEec
Confidence            665421  1 11122222111                  0      123333 333321      11   1245666666


Q ss_pred             Cc-ccCCChhHHHHHHHhcCceEEEEEee
Q 012817          112 DL-VSDVPPGAVTAAHRRHDAVVTAMICS  139 (456)
Q Consensus       112 D~-i~~~~l~~~l~~~~~~~a~~t~~~~~  139 (456)
                      |. +.....-.++-.+...++++..-+.+
T Consensus       283 DN~L~~~Adp~flG~~~~~~~d~~~kvv~  311 (615)
T PLN02830        283 TNGLVFKAIPAALGVSATKGFDMNSLAVP  311 (615)
T ss_pred             cchhhhcccHHHhHHHHhcCCceEEEEEE
Confidence            63 33333467888888888888766654

>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

Probab=95.55  E-value=0.21  Score=41.48  Aligned_cols=96  Identities=21%  Similarity=0.136  Sum_probs=61.2

Q ss_pred             cccCC-cchHHHHHHHHHHCC--CCEEEEEecCchhhHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCCCCc
Q 012817           29 LPVAN-RPVLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD  105 (456)
Q Consensus        29 lpi~g-kpli~~~l~~l~~~g--i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~~~~  105 (456)
                      +|..| .+++.++++.+.+.+  ..+++|+.+....  .......+.................|.+.++..+++....+.
T Consensus         3 i~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~   80 (156)
T cd00761           3 IPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTD--GTLEILEEYAKKDPRVIRVINEENQGLAAARNAGLKAARGEY   80 (156)
T ss_pred             EeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCc--cHHHHHHHHHhcCCCeEEEEecCCCChHHHHHHHHHHhcCCE
Confidence            45555 489999999999887  6788888764422  222222221111112344445566888999888888877678


Q ss_pred             EEEEcCCcccCCC-hhHHHHHH
Q 012817          106 VLVVSGDLVSDVP-PGAVTAAH  126 (456)
Q Consensus       106 ~lv~~~D~i~~~~-l~~~l~~~  126 (456)
                      ++++.+|.+...+ +..++..+
T Consensus        81 v~~~d~D~~~~~~~~~~~~~~~  102 (156)
T cd00761          81 ILFLDADDLLLPDWLERLVAEL  102 (156)
T ss_pred             EEEECCCCccCccHHHHHHHHH
Confidence            9999999777665 44443433

Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als

>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []

Probab=95.21  E-value=0.033  Score=56.14  Aligned_cols=51  Identities=16%  Similarity=0.255  Sum_probs=35.3

Q ss_pred             CCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecCeEECC
Q 012817          386 HCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQ  436 (456)
Q Consensus       386 ~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~~i~~  436 (456)
                      .+.+.+.+.|.+|+|..++.+|+++.|++|.|+.++.||++++|.++-+..
T Consensus       273 ~~~~~~~~~VinSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~~~~  323 (414)
T PF07959_consen  273 PSDSEASSCVINSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVDINS  323 (414)
T ss_pred             ccccCCCeeEEEeEecCCceECCCCEEEeeecCCCCEECCCCEEECCcccc
Confidence            445566667777777777777777777777777777777777776664433

; GO: 0016772 transferase activity, transferring phosphorus-containing groups

>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=94.38  E-value=0.4  Score=40.72  Aligned_cols=108  Identities=18%  Similarity=0.153  Sum_probs=68.9

Q ss_pred             ccccCCc-chHHHHHHHHHHC--CCCEEEEEecCchhhHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCCCC
Q 012817           28 LLPVANR-PVLSYVLEQLELS--NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK  104 (456)
Q Consensus        28 llpi~gk-pli~~~l~~l~~~--gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~~~  104 (456)
                      ++|.-++ ..|..+|+.+.+.  ...+++|+-+...  +...+.+.+.......+.++..++..|.+.++..+++....+
T Consensus         3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~--d~~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a~~~   80 (169)
T PF00535_consen    3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGST--DETEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHAKGE   80 (169)
T ss_dssp             EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-S--SSHHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH--SS
T ss_pred             EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccc--ccccccccccccccccccccccccccccccccccccccccee
Confidence            3566665 6888999988765  3456766655331  112222222211234577887777778889988888888778


Q ss_pred             cEEEEcCCcccCC-ChhHHHHHHHhcCceEEEEE
Q 012817          105 DVLVVSGDLVSDV-PPGAVTAAHRRHDAVVTAMI  137 (456)
Q Consensus       105 ~~lv~~~D~i~~~-~l~~~l~~~~~~~a~~t~~~  137 (456)
                      .++++..|.+... .+..+++.+.+.+.++.+..
T Consensus        81 ~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~  114 (169)
T PF00535_consen   81 YILFLDDDDIISPDWLEELVEALEKNPPDVVIGS  114 (169)
T ss_dssp             EEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred             EEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence            8999999965554 48899999888777654443

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....

>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis

Probab=88.00  E-value=6.8  Score=34.58  Aligned_cols=100  Identities=17%  Similarity=0.146  Sum_probs=60.2

Q ss_pred             ccccCCcc---hHHHHHHHHHHCC--CCEEEEEecCchhhHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCC
Q 012817           28 LLPVANRP---VLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT  102 (456)
Q Consensus        28 llpi~gkp---li~~~l~~l~~~g--i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~  102 (456)
                      ++|..++.   .|..+|+.+.+..  -.+++|+-.... .+...+.+... ..+.++.++..+...|.+.+.-.+++...
T Consensus         3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss-~d~t~~~~~~~-~~~~~i~~i~~~~n~G~~~a~N~g~~~a~   80 (201)
T cd04195           3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPV-TQSLNEVLEEF-KRKLPLKVVPLEKNRGLGKALNEGLKHCT   80 (201)
T ss_pred             EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCC-chhHHHHHHHH-HhcCCeEEEEcCccccHHHHHHHHHHhcC
Confidence            45666653   7999999997653  256655544221 11122212111 11223556555566888888888887776


Q ss_pred             CCcEEEEcCCccc-CCChhHHHHHHHhc
Q 012817          103 AKDVLVVSGDLVS-DVPPGAVTAAHRRH  129 (456)
Q Consensus       103 ~~~~lv~~~D~i~-~~~l~~~l~~~~~~  129 (456)
                      .+.++++.+|.+. +..++.+++...+.
T Consensus        81 gd~i~~lD~Dd~~~~~~l~~~~~~~~~~  108 (201)
T cd04195          81 YDWVARMDTDDISLPDRFEKQLDFIEKN  108 (201)
T ss_pred             CCEEEEeCCccccCcHHHHHHHHHHHhC
Confidence            6778999999544 44588888876543

AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=87.92  E-value=7.7  Score=32.65  Aligned_cols=96  Identities=16%  Similarity=0.120  Sum_probs=60.5

Q ss_pred             cccCCc-chHHHHHHHHHHCC--CCEEEEEecCchhhHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCCCCc
Q 012817           29 LPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD  105 (456)
Q Consensus        29 lpi~gk-pli~~~l~~l~~~g--i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~~~~  105 (456)
                      +|.-++ ..+..+++.+.+..  ..+++|+-+....  ...+.+.+.. .  .+.+...+...|.+.++..+++....+.
T Consensus         3 i~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~--~~~~~~~~~~-~--~~~~~~~~~~~g~~~a~n~~~~~~~~~~   77 (166)
T cd04186           3 IVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTD--GSVELLRELF-P--EVRLIRNGENLGFGAGNNQGIREAKGDY   77 (166)
T ss_pred             EEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCc--hHHHHHHHhC-C--CeEEEecCCCcChHHHhhHHHhhCCCCE
Confidence            455554 68899999997653  4567776653321  1222222221 1  3555555667899999988888887677


Q ss_pred             EEEEcCCcccCC-ChhHHHHHHHhc
Q 012817          106 VLVVSGDLVSDV-PPGAVTAAHRRH  129 (456)
Q Consensus       106 ~lv~~~D~i~~~-~l~~~l~~~~~~  129 (456)
                      ++++..|..... .+..+++.+.+.
T Consensus        78 i~~~D~D~~~~~~~l~~~~~~~~~~  102 (166)
T cd04186          78 VLLLNPDTVVEPGALLELLDAAEQD  102 (166)
T ss_pred             EEEECCCcEECccHHHHHHHHHHhC
Confidence            888888865544 477777765544

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis

Probab=87.84  E-value=0.56  Score=42.65  Aligned_cols=109  Identities=25%  Similarity=0.288  Sum_probs=52.6

Q ss_pred             ceEEEEecCCC---CCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817            3 FQVVVLAGGTS---KKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (456)
Q Consensus         3 ~~aiIlagG~g---~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i   79 (456)
                      |.+||+.-..+   +||.|.    .+-.--.=.-+-|+..++..+..  ++ +++++...    .+.....    ....+
T Consensus         1 m~~VIPvK~~~~aKSRLs~~----L~~~eR~~La~aMl~Dvl~al~~--v~-v~vVs~d~----~v~~~a~----~~~g~   65 (217)
T PF01983_consen    1 MRAVIPVKPLARAKSRLSPV----LSPEEREALALAMLRDVLAALRA--VD-VVVVSRDP----EVAALAR----ARLGA   65 (217)
T ss_dssp             -EEEEE---TT-TTGGGTTT----S-HHHHHHHHHHHHHHHHHHHHH---S-EEEEES------S-TTTTT-------SS
T ss_pred             CeEEEEcCCCCccccccCcc----CCHHHHHHHHHHHHHHHHHHHHh--cC-eEEeccch----hhhhhhh----hccCC
Confidence            67788874333   566432    11100000123599999999977  56 77777643    2222111    12345


Q ss_pred             EEEEccCCcChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHHHH
Q 012817           80 EVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHR  127 (456)
Q Consensus        80 ~~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~~~  127 (456)
                      .++..+ ..|.-.++..+......+.++++++|  .+...++..++....
T Consensus        66 ~vl~d~-~~gLN~Al~~a~~~~~~~~vlvl~aDLPll~~~dl~~~l~~~~  114 (217)
T PF01983_consen   66 EVLPDP-GRGLNAALNAALAAAGDDPVLVLPADLPLLTPEDLDALLAAAG  114 (217)
T ss_dssp             EEEE----S-HHHHHHHHHH-H--S-EEEE-S--TT--HHHHHHHCT-SS
T ss_pred             eEecCC-CCCHHHHHHHHHhccCCCceEEeecCCccCCHHHHHHHHhccC
Confidence            665433 47777888887544456789999999  677788998887643

One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.

>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily

Probab=87.26  E-value=4.6  Score=35.04  Aligned_cols=103  Identities=19%  Similarity=0.167  Sum_probs=62.5

Q ss_pred             cccCCc-chHHHHHHHHHHC----CCCEEEEEecCch-h-hHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcC
Q 012817           29 LPVANR-PVLSYVLEQLELS----NIKDLIVVVEGAD-A-ALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL  101 (456)
Q Consensus        29 lpi~gk-pli~~~l~~l~~~----gi~~v~iv~~~~~-~-~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l  101 (456)
                      +|..+. ..|..+|+.+.+.    ...+++|+-+... . .+.++++..+.    ..+.++..+...|.+.++..+++..
T Consensus         3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~----~~~~~~~~~~n~G~~~a~n~g~~~a   78 (185)
T cd04179           3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARV----PRVRVIRLSRNFGKGAAVRAGFKAA   78 (185)
T ss_pred             ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhC----CCeEEEEccCCCCccHHHHHHHHHh
Confidence            344444 4677788888665    2566776654321 1 12333333221    1234555566688888888887777


Q ss_pred             CCCcEEEEcCCccc-CCChhHHHHHHHhcCceEEE
Q 012817          102 TAKDVLVVSGDLVS-DVPPGAVTAAHRRHDAVVTA  135 (456)
Q Consensus       102 ~~~~~lv~~~D~i~-~~~l~~~l~~~~~~~a~~t~  135 (456)
                      ..+.++++.+|... +..++.+++...+.+.++.+
T Consensus        79 ~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~  113 (185)
T cd04179          79 RGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVI  113 (185)
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEE
Confidence            66789999999544 44588888875665665543

DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex

>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional

Probab=86.78  E-value=0.84  Score=50.50  Aligned_cols=56  Identities=11%  Similarity=0.169  Sum_probs=33.0

Q ss_pred             CCCEECCCCEECCCCe-EeeeEECCCCEECCCcEEeCeE-ECCCCEECCCcEEcCeEE
Q 012817          362 PHCMLGEGSQMGDKCS-VKRSVIGRHCRIGSNVKVVNSV-VMNHVTIGDGCSIQGSVI  417 (456)
Q Consensus       362 ~~~~i~~~~~I~~~~~-i~~s~Ig~~~~ig~~~~i~~s~-i~~~~~ig~~~~i~~~ii  417 (456)
                      -|+++..++.+++++. |.+|.|+.++.||++++|.++- ...+.+|-+++.|...=+
T Consensus       335 ~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv~~~~~~~~vP~~~ci~~vpl  392 (974)
T PRK13412        335 QNAVLSGKLTAENATLWIENSHVGEGWKLASRSIITGVPENSWNLDLPEGVCIDVVPV  392 (974)
T ss_pred             EeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEecccccccceecCCCcEEEEEEc
Confidence            5666666666666644 5556677777777666666553 222456666666654333

>cd06423 CESA_like CESA_like is the cellulose synthase superfamily

Probab=85.05  E-value=8.7  Score=32.31  Aligned_cols=98  Identities=22%  Similarity=0.219  Sum_probs=58.8

Q ss_pred             cccCCc-chHHHHHHHHHHCC--CCEEEEEecCchh--hHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCCC
Q 012817           29 LPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADA--ALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA  103 (456)
Q Consensus        29 lpi~gk-pli~~~l~~l~~~g--i~~v~iv~~~~~~--~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~~  103 (456)
                      +|.-++ ..|..+|+.+.+..  ..+++|+-+....  .+.+.++....   ...+.+...+...|.+.++..+++....
T Consensus         3 ip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~n~~~~~~~~   79 (180)
T cd06423           3 VPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALY---IRRVLVVRDKENGGKAGALNAGLRHAKG   79 (180)
T ss_pred             ecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccc---cceEEEEEecccCCchHHHHHHHHhcCC
Confidence            455554 68888899987764  3566666543221  12233222111   1123344445568888888888888877


Q ss_pred             CcEEEEcCCcccCC-ChhHHHHHHHhc
Q 012817          104 KDVLVVSGDLVSDV-PPGAVTAAHRRH  129 (456)
Q Consensus       104 ~~~lv~~~D~i~~~-~l~~~l~~~~~~  129 (456)
                      +.++++.+|.+... .+..++..+.+.
T Consensus        80 ~~i~~~D~D~~~~~~~l~~~~~~~~~~  106 (180)
T cd06423          80 DIVVVLDADTILEPDALKRLVVPFFAD  106 (180)
T ss_pred             CEEEEECCCCCcChHHHHHHHHHhccC
Confidence            78999999955544 477775555443

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the

>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation

Probab=83.54  E-value=8.5  Score=34.44  Aligned_cols=104  Identities=21%  Similarity=0.212  Sum_probs=60.7

Q ss_pred             cccCCc-chHHHHHHHHHHC------CCCEEEEEecCc-hhh-HHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHh
Q 012817           29 LPVANR-PVLSYVLEQLELS------NIKDLIVVVEGA-DAA-LRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAH   99 (456)
Q Consensus        29 lpi~gk-pli~~~l~~l~~~------gi~~v~iv~~~~-~~~-~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~   99 (456)
                      +|.-+. .-|..+|+.+.+.      ..-+++|+-+.. +.. +.++++....   ...+.++..+...|.+.++..+++
T Consensus         3 ip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~---~~~i~~i~~~~n~G~~~a~~~g~~   79 (211)
T cd04188           3 IPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKN---PALIRVLTLPKNRGKGGAVRAGML   79 (211)
T ss_pred             EcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhC---CCcEEEEEcccCCCcHHHHHHHHH
Confidence            444443 4566666666543      234666664322 111 2333333221   111355555566899999998888


Q ss_pred             cCCCCcEEEEcCCccc-CCChhHHHHHHHhcCceEEE
Q 012817          100 HLTAKDVLVVSGDLVS-DVPPGAVTAAHRRHDAVVTA  135 (456)
Q Consensus       100 ~l~~~~~lv~~~D~i~-~~~l~~~l~~~~~~~a~~t~  135 (456)
                      ....+.++++.+|... ...+..+++...+.+.++.+
T Consensus        80 ~a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~  116 (211)
T cd04188          80 AARGDYILFADADLATPFEELEKLEEALKTSGYDIAI  116 (211)
T ss_pred             HhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEE
Confidence            7777889999999544 44588888875555555544

UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.

>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily

Probab=83.51  E-value=19  Score=33.09  Aligned_cols=105  Identities=21%  Similarity=0.259  Sum_probs=63.9

Q ss_pred             CCCcc--cccccCCc-chHHHHHHHHHHCCC----CEEEEEecCchhhHHHHhhhhhhccCccceEEEEccCCcChHHHH
Q 012817           22 KEVPK--ALLPVANR-PVLSYVLEQLELSNI----KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGAL   94 (456)
Q Consensus        22 ~~~pK--~llpi~gk-pli~~~l~~l~~~gi----~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al   94 (456)
                      ...|+  -++|..|. ..|..+|+.+.+...    -+++|+.+....  ...+.+.+.. .. .+.++..+...|.+.++
T Consensus        26 ~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d--~t~~~~~~~~-~~-~v~~i~~~~~~g~~~a~  101 (251)
T cd06439          26 AYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTD--GTAEIAREYA-DK-GVKLLRFPERRGKAAAL  101 (251)
T ss_pred             CCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCc--cHHHHHHHHh-hC-cEEEEEcCCCCChHHHH
Confidence            34444  45677665 578888888765432    256666543221  1222222211 11 35666556667888888


Q ss_pred             HHHHhcCCCCcEEEEcCCcccCC-ChhHHHHHHHhcC
Q 012817           95 RAIAHHLTAKDVLVVSGDLVSDV-PPGAVTAAHRRHD  130 (456)
Q Consensus        95 ~~~~~~l~~~~~lv~~~D~i~~~-~l~~~l~~~~~~~  130 (456)
                      ..+++....+.++++.+|.+... .+.++++...+.+
T Consensus       102 n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~  138 (251)
T cd06439         102 NRALALATGEIVVFTDANALLDPDALRLLVRHFADPS  138 (251)
T ss_pred             HHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCC
Confidence            88888777778999999965554 4888887765433

This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.

>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1

Probab=83.11  E-value=7.3  Score=35.04  Aligned_cols=102  Identities=18%  Similarity=0.156  Sum_probs=61.9

Q ss_pred             cccCCc-chHHHHHHHHHHCC---CCEEEEEecCc-hhh-HHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCC
Q 012817           29 LPVANR-PVLSYVLEQLELSN---IKDLIVVVEGA-DAA-LRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT  102 (456)
Q Consensus        29 lpi~gk-pli~~~l~~l~~~g---i~~v~iv~~~~-~~~-~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~  102 (456)
                      +|.-+. ..|..+|+.+.+.-   ..+++|+-+.. +.. +.++++....    ..+.+.......|.+.++-.+++...
T Consensus         3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~----~~i~~~~~~~n~G~~~a~n~g~~~a~   78 (224)
T cd06442           3 IPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEY----PRVRLIVRPGKRGLGSAYIEGFKAAR   78 (224)
T ss_pred             EeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhC----CceEEEecCCCCChHHHHHHHHHHcC
Confidence            455454 56788888886542   34666664422 111 2233333221    12455555667888888888888777


Q ss_pred             CCcEEEEcCCcccCC-ChhHHHHHHHhcCceEE
Q 012817          103 AKDVLVVSGDLVSDV-PPGAVTAAHRRHDAVVT  134 (456)
Q Consensus       103 ~~~~lv~~~D~i~~~-~l~~~l~~~~~~~a~~t  134 (456)
                      .+.++++.+|..... .+..+++.....+.++.
T Consensus        79 gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v  111 (224)
T cd06442          79 GDVIVVMDADLSHPPEYIPELLEAQLEGGADLV  111 (224)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEE
Confidence            678889999955443 47788887555555543

Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,

>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins

Probab=83.08  E-value=1.8  Score=34.06  Aligned_cols=61  Identities=18%  Similarity=0.314  Sum_probs=35.9

Q ss_pred             CCEECCCcEEeCeEECCCCEECCCcEEcCeEEC-CCCEECCCcEecCeEECCCCEECCCcEEcC
Q 012817          386 HCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVIC-SNAQLQERVALKDCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       386 ~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~-~~~~I~~~~~i~~~~i~~~~~v~~~~~~~~  448 (456)
                      ...|+.++.|...+-.+.+.|.- . +.+.+.. ..+.|...+.+.+.+-.+.-.|.+++.+.|
T Consensus        36 ~v~i~~~~~v~G~i~~~~~~i~G-~-v~G~v~a~~~v~i~~~~~v~G~i~~~~l~v~~ga~i~G   97 (101)
T PF04519_consen   36 KVKIGGNGEVKGDIKADDVIISG-S-VDGNVEASGKVEIYGTARVEGDITAGKLEVEGGASING   97 (101)
T ss_pred             EEEEcCCCEEEEEEEEeEEEEcC-E-EeEEEEECceEEEeCCEEEEEEEEECEEEEeCCCEEEE
Confidence            56666666666555555555532 2 4433333 556677777776666666666666666655

>PRK10073 putative glycosyl transferase; Provisional

Probab=81.61  E-value=12  Score=36.60  Aligned_cols=102  Identities=19%  Similarity=0.176  Sum_probs=62.6

Q ss_pred             cccCC-cchHHHHHHHHHHCCCC--EEEEEecCc-hhh-HHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCCC
Q 012817           29 LPVAN-RPVLSYVLEQLELSNIK--DLIVVVEGA-DAA-LRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA  103 (456)
Q Consensus        29 lpi~g-kpli~~~l~~l~~~gi~--~v~iv~~~~-~~~-~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~~  103 (456)
                      +|+-+ ...|..+|+.+.+....  +++|+-... +.+ +.++++....    ..+.+.. .+..|.+.+.-.+++....
T Consensus        12 IP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~----~~i~vi~-~~n~G~~~arN~gl~~a~g   86 (328)
T PRK10073         12 IPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAENY----PHVRLLH-QANAGVSVARNTGLAVATG   86 (328)
T ss_pred             EeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHhhC----CCEEEEE-CCCCChHHHHHHHHHhCCC
Confidence            55544 36889999999765433  555554322 212 2233333221    1355543 3457887777777887777


Q ss_pred             CcEEEEcCC-cccCCChhHHHHHHHhcCceEEE
Q 012817          104 KDVLVVSGD-LVSDVPPGAVTAAHRRHDAVVTA  135 (456)
Q Consensus       104 ~~~lv~~~D-~i~~~~l~~~l~~~~~~~a~~t~  135 (456)
                      +.++++.+| .+.+..++.+++...+.+.++.+
T Consensus        87 ~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~  119 (328)
T PRK10073         87 KYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ  119 (328)
T ss_pred             CEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence            889999999 45555588888877766777644

>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily

Probab=81.52  E-value=23  Score=32.43  Aligned_cols=105  Identities=14%  Similarity=0.145  Sum_probs=59.2

Q ss_pred             cccCCc-chHHHHHHHHHHCCC----CEEEEEecCc-hhh-HHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcC
Q 012817           29 LPVANR-PVLSYVLEQLELSNI----KDLIVVVEGA-DAA-LRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL  101 (456)
Q Consensus        29 lpi~gk-pli~~~l~~l~~~gi----~~v~iv~~~~-~~~-~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l  101 (456)
                      +|.-+. -.|..+|+.+.+...    -+++|+.... +.. +.++++...   ....+.+.......|.+.++..+++..
T Consensus         7 Ip~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~---~~~~i~~~~~~~~~G~~~a~n~g~~~a   83 (241)
T cd06427           7 VPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLP---SIFRVVVVPPSQPRTKPKACNYALAFA   83 (241)
T ss_pred             EecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccC---CCeeEEEecCCCCCchHHHHHHHHHhc
Confidence            444443 467788888876432    2455554422 111 122222110   111222222223467888888888877


Q ss_pred             CCCcEEEEcCCcccCC-ChhHHHHHHHhcCceEEEE
Q 012817          102 TAKDVLVVSGDLVSDV-PPGAVTAAHRRHDAVVTAM  136 (456)
Q Consensus       102 ~~~~~lv~~~D~i~~~-~l~~~l~~~~~~~a~~t~~  136 (456)
                      ..+.++++.+|..... .+.++++.+.+.+.++.++
T Consensus        84 ~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~  119 (241)
T cd06427          84 RGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACV  119 (241)
T ss_pred             CCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEE
Confidence            7678899999965554 4888888876554555443

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot

>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis

Probab=80.93  E-value=16  Score=32.14  Aligned_cols=94  Identities=17%  Similarity=0.114  Sum_probs=56.4

Q ss_pred             chHHHHHHHHHHCCC--CEEEEEecCchh--hHHH-HhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCCCCcEEEE
Q 012817           35 PVLSYVLEQLELSNI--KDLIVVVEGADA--ALRV-GGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVV  109 (456)
Q Consensus        35 pli~~~l~~l~~~gi--~~v~iv~~~~~~--~~~i-~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~~~~~lv~  109 (456)
                      ..+..+|+.+.+.-.  .+++|+-+....  .+.+ ..+...    ...+.+...+...|.+.++-.+++....+.++++
T Consensus        15 ~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~a~n~g~~~a~~d~i~~l   90 (202)
T cd04184          15 KYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQ----DPRIKVVFREENGGISAATNSALELATGEFVALL   90 (202)
T ss_pred             HHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhc----CCCEEEEEcccCCCHHHHHHHHHHhhcCCEEEEE
Confidence            678888888876433  366666443211  1122 222211    1235555555667888888777777766778888


Q ss_pred             cCCcccCC-ChhHHHHHH-HhcCce
Q 012817          110 SGDLVSDV-PPGAVTAAH-RRHDAV  132 (456)
Q Consensus       110 ~~D~i~~~-~l~~~l~~~-~~~~a~  132 (456)
                      ..|..... .+..+++.+ ...+..
T Consensus        91 d~D~~~~~~~l~~~~~~~~~~~~~~  115 (202)
T cd04184          91 DHDDELAPHALYEVVKALNEHPDAD  115 (202)
T ss_pred             CCCCcCChHHHHHHHHHHHhCCCCC
Confidence            88865554 488888876 334443

The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	456
1lvw_A	295	Crystal Structure Of Glucose-1-phosphate Thymidylyl		4e-05
1h5t_A	293	Thymidylyltransferase Complexed With Thymidylyldiph		1e-04
1h5s_D	293	Thymidylyltransferase Complexed With Tmp Length = 2		1e-04
3pkp_A	292	Q83s Variant Of S. Enterica Rmla With Datp Length =		1e-04
3pkq_A	292	Q83d Variant Of S. Enterica Rmla With Dgtp Length =		1e-04
1h5s_A	293	Thymidylyltransferase Complexed With Tmp Length = 2		1e-04
1h5r_B	293	Thymidylyltransferase Complexed With Thimidine And		1e-04
1mp3_A	292	L89t Variant Of S. Enterica Rmla Length = 292		3e-04
1mp5_A	292	Y177f Variant Of S. Enterica Rmla Length = 292		3e-04
1mp4_A	292	W224h Variant Of S. Enterica Rmla Length = 292		3e-04
1iim_A	292	Thymidylyltransferase Complexed With Ttp Length = 2		3e-04

>pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate Thymidylyltransferase, Rmla, Complex With Dtdp Length = 295

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL 63
          +VLAGG+  +L P +++ V K LLP+ ++P++ Y L  L L+ I+D++++    D  L
Sbjct: 7  IVLAGGSGTRLYP-ITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPL 63

>pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With Thymidylyldiphosphate- Glucose Length = 293

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          ++LAGG+  +L P V+  V K LLP+ ++P++ Y L  L L+ I+D++++
Sbjct: 7  IILAGGSGTRLYP-VTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILII 55

>pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp Length = 293

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          ++LAGG+  +L P V+  V K LLP+ ++P++ Y L  L L+ I+D++++
Sbjct: 7  IILAGGSGTRLYP-VTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILII 55

>pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp Length = 292

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          ++LAGG+  +L P V+  V K LLP+ ++P++ Y L  L L+ I+D++++
Sbjct: 7  IILAGGSGTRLYP-VTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILII 55

>pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp Length = 292

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          ++LAGG+  +L P V+  V K LLP+ ++P++ Y L  L L+ I+D++++
Sbjct: 7  IILAGGSGTRLYP-VTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILII 55

>pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp Length = 293

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          ++LAGG+  +L P V+  V K LLP+ ++P++ Y L  L L+ I+D++++
Sbjct: 7  IILAGGSGTRLYP-VTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILII 55

>pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And Glucose- 1-Phospate Length = 293

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          ++LAGG+  +L P V+  V K LLP+ ++P++ Y L  L L+ I+D++++
Sbjct: 7  IILAGGSGTRLYP-VTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILII 55

>pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla Length = 292

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRV 65
          ++LAGG+  +L P V+  V + LLP+ ++P++ Y L  L L+ I+D++++    D   R 
Sbjct: 7  IILAGGSGTRLYP-VTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTP-RF 64
Query: 66 GGWISAAYVDRLHVEVATVPEDVGTAGAL 94
             +       L+++    P   GTA A 
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGTAQAF 93

>pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla Length = 292

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          ++LAGG+  +L P V+  V + LLP+ ++P++ Y L  L L+ I+D++++
Sbjct: 7  IILAGGSGTRLYP-VTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILII 55

>pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla Length = 292

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          ++LAGG+  +L P V+  V + LLP+ ++P++ Y L  L L+ I+D++++
Sbjct: 7  IILAGGSGTRLYP-VTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILII 55

>pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp Length = 292

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          ++LAGG+  +L P V+  V + LLP+ ++P++ Y L  L L+ I+D++++
Sbjct: 7  IILAGGSGTRLYP-VTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILII 55

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	456
1jyk_A	254	LICC protein, CTP:phosphocholine cytidylytransfera	1e-15
3rsb_A	196	Adenosylcobinamide-phosphate guanylyltransferase;	7e-15
2xme_A	232	CTP-inositol-1-phosphate cytidylyltransferase; CDP	3e-13
2dpw_A	232	Hypothetical protein TTHA0179; transferase, struct	8e-13
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	1e-12
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	1e-09
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	1e-11
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	2e-11
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	2e-11
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	1e-10
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	2e-10
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	1e-08
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	2e-05
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	8e-04
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	6e-10
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	4e-04
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	1e-09
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	5e-04
2wee_A	197	MOBA-related protein; unknown function; 1.65A {Myc	2e-09
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	1e-08
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	5e-07
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	3e-08
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	6e-08
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	7e-08
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	9e-08
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	1e-07
2waw_A	199	MOBA relate protein; unknown function; HET: PGE; 1	2e-07
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	2e-07
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	2e-07
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	2e-07
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	3e-07
2vsh_A	236	TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly	6e-07
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	6e-07
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	5e-05
2xwl_A	223	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	7e-07
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	2e-06
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	4e-04
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	5e-04
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	2e-06
3f1c_A	246	Putative 2-C-methyl-D-erythritol 4-phosphate cytid	3e-06
1vgw_A	231	4-diphosphocytidyl-2C-methyl-D-erythritol synthas;	4e-06
4evw_A	255	Nucleoside-diphosphate-sugar pyrophosphorylase; st	6e-06
3q80_A	231	2-C-methyl-D-erythritol 4-phosphate cytidyltransf;	6e-06
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	1e-05
2yc3_A	228	2-C-methyl-D-erythritol 4-phosphate cytidylyltran	3e-05
1i52_A	236	4-diphosphocytidyl-2-C-methylerythritol synthase;	4e-05
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	4e-05
2px7_A	236	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	5e-05
1e5k_A	201	Molybdopterin-guanine dinucleotide biosynthesis pr	6e-05
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	7e-05
1vpa_A	234	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	7e-05
1w55_A	371	ISPD/ISPF bifunctional enzyme; biosynthetic pathwa	9e-05
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	1e-04
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	1e-04
3d5n_A	197	Q97W15_sulso; NESG, SSR125, structural genomics, P	1e-04
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	4e-04
1tzf_A	259	Glucose-1-phosphate cytidylyltransferase; nucleoti	6e-04

>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Length = 254

 Score = 75.2 bits (185), Expect = 1e-15
 Identities = 23/121 (19%), Positives = 52/121 (42%), Gaps = 17/121 (14%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           +  + ++LA G   +L PL ++  PKAL+ V  +P++ Y +E L+   I D+I++V    
Sbjct: 24  IRVKAIILAAGLGTRLRPL-TENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIV---- 78

Query: 61  AALRVGGWIS---AAYVDRLHVEVATVPEDV--GTAGALRAIAHHLTAKDVLVVSGDLVS 115
                 G++        ++  V +    +        +L  +   L     ++ + + + 
Sbjct: 79  ------GYLKEQFDYLKEKYGVRLVFNDKYADYNNFYSLYLVKEELA-NSYVIDADNYLF 131

Query: 116 D 116
            
Sbjct: 132 K 132

>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} Length = 196

 Score = 72.1 bits (177), Expect = 7e-15
 Identities = 19/134 (14%), Positives = 44/134 (32%), Gaps = 13/134 (9%)

Query: 4   QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVE-GADAA 62
             +++AGG   ++  +      K L+ +  R ++ YV+  L  S + ++ +         
Sbjct: 2   DALIMAGGKGTRMGGV-----EKPLIKLCGRCLIDYVVSPLLKSKVNNIFIATSPNTPKT 56

Query: 63  LRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPG 120
                     Y + + ++        G    L     +  ++  LVVS D   +      
Sbjct: 57  KEYINSAYKDYKNIVVID----TSGKGYIEDLNECIGYF-SEPFLVVSSDLINLKSKIIN 111

Query: 121 AVTAAHRRHDAVVT 134
           ++        A   
Sbjct: 112 SIVDYFYCIKAKTP 125

>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* Length = 232

 Score = 68.0 bits (167), Expect = 3e-13
 Identities = 28/174 (16%), Positives = 57/174 (32%), Gaps = 33/174 (18%)

Query: 4   QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL 63
           + V+LA G   +L       VPK L+ V    ++   ++ L   ++ + I+V        
Sbjct: 20  KAVILAAGLGTRL-----GGVPKPLVRVGGCEIILRTMKLLS-PHVSEFIIVA------- 66

Query: 64  RVGGW----ISAAYVDR-LHVEVATVPE-DVGTAGALRAIAHHLTAKDVLVVSGDLVSDV 117
                    I A   D+  + ++      + G   +L    +H+     ++  GD V   
Sbjct: 67  ---SRYADDIDAFLKDKGFNYKIVRHDRPEKGNGYSLLVAKNHVE-DRFILTMGDHVYSQ 122

Query: 118 PPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT-----KKPGRYNII 166
                     R + V+           + EA     +D       K    ++ +
Sbjct: 123 ---QFIEKAVRGEGVIA--DREPRFVDIGEATKIRVEDGRVAKIGKDLREFDCV 171

>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 Length = 232

 Score = 66.8 bits (163), Expect = 8e-13
 Identities = 31/137 (22%), Positives = 47/137 (34%), Gaps = 21/137 (15%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           M    +VLAGG  K+          KAL+P   RP++ +VLE L  + +   + V E   
Sbjct: 1   MRPSAIVLAGG--KEAWAERFGVGSKALVPYRGRPMVEWVLEALYAAGL-SPVYVGENPG 57

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVP 118
                                 T+P+  G    L     H+    VLV +GD   +++  
Sbjct: 58  LV---------------PAPALTLPDRGGLLENLEQALEHVEG-RVLVATGDIPHLTEEA 101

Query: 119 PGAVTAAHRRHDAVVTA 135
              V         V   
Sbjct: 102 VRFVLDKAPEAALVYPI 118

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score = 68.4 bits (168), Expect = 1e-12
 Identities = 30/138 (21%), Positives = 61/138 (44%), Gaps = 23/138 (16%)

Query: 4   QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL 63
           +  +LA G+ ++L P+     PKA +P+ ++P++ Y +E L    I+D+ V+V       
Sbjct: 2   KAFILAAGSGERLEPITHT-RPKAFVPILSKPLIEYQIEYLRKCGIRDITVIV------- 53

Query: 64  RVGGWISAAYVDRLHVEVATVPED---VGTAGALRAIAHHLTAK---DVLVVSGDLVSDV 117
                 +  Y ++   E++ V +     GT  A+ +      AK   + L++ GDL    
Sbjct: 54  ---SSKNKEYFEKKLKEISIVTQKDDIKGTGAAILS------AKFNDEALIIYGDLFFSN 104

Query: 118 PPGAVTAAHRRHDAVVTA 135
                     + +A++  
Sbjct: 105 EKEICNIITLKENAIIGV 122

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score = 59.1 bits (144), Expect = 1e-09
 Identities = 19/127 (14%), Positives = 41/127 (32%), Gaps = 7/127 (5%)

Query: 304 VYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPH 363
           V +     Y + +      +D+N+  +              N  I     +     +   
Sbjct: 197 VKVIEYEGYWMDIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSG 256

Query: 364 CMLGEGSQMGDKCSVK-----R--SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSV 416
             +     +G    +      R  +++    +IG++V+V  SV+M    I     +  SV
Sbjct: 257 TYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDSV 316

Query: 417 ICSNAQL 423
           I  +   
Sbjct: 317 IAEDVNF 323

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341

 Score = 64.9 bits (159), Expect = 1e-11
 Identities = 19/74 (25%), Positives = 43/74 (58%), Gaps = 3/74 (4%)

Query: 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-NSVVMNHV 404
           +I  +A+LG+  ++G + ++  G ++GD   +     +G++ +IG+  ++  N  + + +
Sbjct: 105 VIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEI 164

Query: 405 TIGDGCSIQ-GSVI 417
            IG  C IQ G+V+
Sbjct: 165 QIGQNCLIQSGTVV 178

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-NSVVMNHV 404
           I+   AE+    +VG + ++  G+++G   S+    VIG    IG    +     + + V
Sbjct: 127 IVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHDV 186

Query: 405 TIGDGCSIQ-GSVI 417
           TIG   SIQ G+VI
Sbjct: 187 TIGARVSIQSGAVI 200

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 3/74 (4%)

Query: 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-NSVVMNHV 404
           +IHP+A +     + P+ ++ + + +G  C +   SVIG +  +G +  +    V+   V
Sbjct: 132 VIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERV 191

Query: 405 TIGDGCSIQ-GSVI 417
           +IG    IQ G+VI
Sbjct: 192 SIGKRVIIQPGAVI 205

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420

 Score = 61.8 bits (151), Expect = 1e-10
 Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 14/120 (11%)

Query: 318 SIQAFMDINRDVIGEANHLSGYN-----FSAQNN-----IIHPSAELGSKTTVGPHCMLG 367
           +I A+   N D+      L  Y+     ++          +H   +           ++ 
Sbjct: 272 TIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSAV---SSVVS 328

Query: 368 EGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERV 427
               +    ++ RS++    R  S  ++ N+VV+  V IG    +   VI     + E +
Sbjct: 329 GDCII-SGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSNVVIDHGVVIPEGL 387

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSV-IGRHCRIGSNVKVVNSV-VMN 402
            N+I+    +G     G    + E +++G+   +     I  H  IG+ V + ++V V  
Sbjct: 82  ENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFVGE 141

Query: 403 HVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGC 444
              I D   +   V+ +N        L    +    V++A  
Sbjct: 142 KSIIKDFVWLFPHVVLTNDPTPPSNELLGVTIELFAVIAARS 183

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 10/107 (9%)

Query: 344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKV---VNSV 399
           ++ II     +G   T+  +  +  G  + D   +K+ S IG    +G  +         
Sbjct: 7   KSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRIN 66

Query: 400 VMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGYVVSAGCE 445
             + + IG+   I+  +VI  +  +       + Q G    +    +
Sbjct: 67  KKHPLIIGENALIRTENVIYGDTIIG-----DNFQTGHKVTIRENTK 108

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 24/123 (19%)

Query: 319 IQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV 378
           I+    I  D I   N  +G         I  + ++G+   +G    +     +G+  ++
Sbjct: 79  IRTENVIYGDTIIGDNFQTG-----HKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNI 133

Query: 379 KRSV-IGRHCRIGSNVKVVNSVVMN-----------HVTIGDGCSIQGSV-------ICS 419
             +V +G    I   V +   VV+             VTI     I           I  
Sbjct: 134 HSNVFVGEKSIIKDFVWLFPHVVLTNDPTPPSNELLGVTIELFAVIAARSVVLPGIHINE 193

Query: 420 NAQ 422
           +A 
Sbjct: 194 DAL 196

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 17/81 (20%)

Query: 381 SVIGRHCRIGSNVKV-------VNSVVMNHVTIGDGCSI-QGSVICSNAQLQERV----- 427
           + I +   I   V +        N  +     I D   I +GS I + + L E +     
Sbjct: 3   NNISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYN 62

Query: 428 ----ALKDCQVGQGYVVSAGC 444
                     +G+  ++    
Sbjct: 63  DRINKKHPLIIGENALIRTEN 83

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192

 Score = 57.7 bits (139), Expect = 6e-10
 Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 7/107 (6%)

Query: 345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKV-VNSVVMN 402
             I+   A +G+ + +     +  G+++G+ CS+ +   +G   RIG+ VK+  N  V +
Sbjct: 9   TAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYD 68

Query: 403 HVTIGDGCSIQGSVICSN-----AQLQERVALKDCQVGQGYVVSAGC 444
           +V + D      S++ +N     A ++ +   +D  V QG  + A C
Sbjct: 69  NVFLEDDVFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANC 115

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 13/110 (11%)

Query: 344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSV-------IGRHCRIGSNVKVV 396
               I   AE+G   ++G +  +G   ++G++  ++ +V       +      G ++   
Sbjct: 26  HWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFT 85

Query: 397 NSVVMNHVTIGDGCSIQ-----GSVICSNAQLQERVAL-KDCQVGQGYVV 440
           N                     G+ + +N  +     + +   VG G VV
Sbjct: 86  NVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVV 135

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 19/125 (15%)

Query: 327 RDVIGEANHLSGYNFSAQNNIIHPSA--------ELGSKTTVGPHCMLGEGSQMGDKCSV 378
           R  I +    +G+      N+IH SA        E  +   + P+ ++   +++     +
Sbjct: 60  RKKIYQKISENGFKIV---NLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVIL 116

Query: 379 K-RSVIGRHCRIGSNVKVVNSVVMN-HVTIGDGCSIQGSVICSNAQLQERVAL-KDCQVG 435
              SVI   C IG    V        +V IG  C      +  N+ +   ++L  D  +G
Sbjct: 117 NTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNC-----FLGINSCVLPNLSLADDSILG 171

Query: 436 QGYVV 440
            G  +
Sbjct: 172 GGATL 176

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 13/91 (14%), Positives = 32/91 (35%), Gaps = 2/91 (2%)

Query: 319 IQAFMDINRDV-IGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCS 377
           I  ++ IN    I +   L+  +      +I   + +        +  +G+   +G    
Sbjct: 98  IMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSC 157

Query: 378 VKRSV-IGRHCRIGSNVKVVNSVVMNHVTIG 407
           V  ++ +     +G    +V +     V +G
Sbjct: 158 VLPNLSLADDSILGGGATLVKNQDEKGVFVG 188

>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A Length = 197

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 18/136 (13%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
            VVLA G S +L        PK LLP  +  VL   L+    +    LI+ + G  A+  
Sbjct: 8   GVVLAAGRSNRL------GTPKQLLPYRDTTVLGATLDVARQAGFDQLILTL-GGAASAV 60

Query: 65  VGGWISAAYVDRLHVEVATVPE-DVGTAGALRAIAHHL--TAKDVLVVSGD--LVSDVPP 119
                  A +     +V  V + + G A +LR     +   A  ++++ GD   V+    
Sbjct: 61  ------RAAMALDGTDVVVVEDVERGCAASLRVALARVHPRATGIVLMLGDQPQVAPATL 114

Query: 120 GAVTAAHRRHDAVVTA 135
             +       + +V  
Sbjct: 115 RRIIDVGPATEIMVCR 130

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 17/112 (15%)

Query: 338 GYNFSAQNNIIHPSA------ELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIG 390
           G++     N IHPSA       LG    V     +   S +GD   +   +V+   CR+G
Sbjct: 95  GFSLV---NAIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLG 151

Query: 391 SNVKV-VNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGYVV 440
           +   +   S +   V++G+   +  G+ +     +       D  VG G VV
Sbjct: 152 AACHLGPASALAGGVSVGERAFLGVGARVIPGVTIG-----ADTIVGAGGVV 198

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 7/93 (7%)

Query: 330 IGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRI 389
           +GE   +        ++ I   A + +   V   C LG    +G       S +     +
Sbjct: 114 LGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGP-----ASALAGGVSV 168

Query: 390 GSNVKV-VNSVVMNHVTIGDGCSIQ-GSVICSN 420
           G    + V + V+  VTIG    +  G V+  +
Sbjct: 169 GERAFLGVGARVIPGVTIGADTIVGAGGVVVRD 201

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A* Length = 259

 Score = 53.7 bits (130), Expect = 3e-08
 Identities = 19/77 (24%), Positives = 25/77 (32%), Gaps = 17/77 (22%)

Query: 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI 406
           II P AEL     VGP+ ++                I     I  +V      +     I
Sbjct: 8   IIDPKAELHESVEVGPYSIIEGN-----------VSIQEGTIIEGHV-----KICAGSEI 51

Query: 407 GDGCSI-QGSVICSNAQ 422
           G      QG+VI    Q
Sbjct: 52  GKFNRFHQGAVIGVMPQ 68

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 Length = 270

 Score = 52.6 bits (127), Expect = 6e-08
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 17/77 (22%)

Query: 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI 406
           II P AE+     +G  C++G+G        VK   +    ++ +NV      +  H  +
Sbjct: 9   IISPKAEINKGVEIGEFCVIGDG--------VK---LDEGVKLHNNV-----TLQGHTFV 52

Query: 407 GDGCSI-QGSVICSNAQ 422
           G    I   +V+ +  Q
Sbjct: 53  GKNTEIFPFAVLGTQPQ 69

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} Length = 266

 Score = 52.6 bits (127), Expect = 7e-08
 Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 17/72 (23%)

Query: 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI 406
           +I   A+LG    +  +  + +            + IG +  I          +++  TI
Sbjct: 12  VIEEGAQLGDDVVIEAYAYVSKD-----------AKIGNNVVIKQGA-----RILSDTTI 55

Query: 407 GDGCSI-QGSVI 417
           GD   +   +++
Sbjct: 56  GDHSRVFSYAIV 67

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} Length = 283

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 17/72 (23%)

Query: 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI 406
           II P A+L     VGP+ ++G          V    IG    IGS+      V+  H TI
Sbjct: 30  IIEPGAQLHETVEVGPYAIVGSN--------V---TIGARTTIGSHS-----VIEGHTTI 73

Query: 407 GDGCSI-QGSVI 417
           G+   I   + +
Sbjct: 74  GEDNRIGHYASV 85

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A Length = 262

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 17/72 (23%)

Query: 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI 406
           I+   A +G+   +GP C++G               IG    + S+V     VV  H  I
Sbjct: 13  IVEEGASIGANAHIGPFCIVGPH-----------VEIGEGTVLKSHV-----VVNGHTKI 56

Query: 407 GDGCSI-QGSVI 417
           G    I Q + I
Sbjct: 57  GRDNEIYQFASI 68

>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} Length = 199

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 18/134 (13%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
            VVLA G S++L        PK LLP+ +  +L   L          LIV + G  A   
Sbjct: 8   GVVLAAGYSRRL------GTPKQLLPLGDTTLLGATLAMARRCPFDQLIVTL-GGAADEV 60

Query: 65  VGGWISAAYVDRLHVEVATVPE-DVGTAGALRAIAHHL--TAKDVLVVSGD--LVSDVPP 119
                    V+   +++  V +  +G + +L++    +  TA+ ++++ GD   ++    
Sbjct: 61  ------LEKVELDGLDIVLVDDAGLGCSSSLKSALTWVDPTAEGIVLMLGDQPGITASAV 114

Query: 120 GAVTAAHRRHDAVV 133
            ++ A  R     V
Sbjct: 115 ASLIAGGRGATIAV 128

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} Length = 305

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 16/98 (16%)

Query: 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI 406
           ++HP+A +G   +VGP+C +G               +G  C++  +       V  +  +
Sbjct: 15  VVHPNAVIGKGVSVGPYCTIGSS-----------VKLGNGCKLYPSS-----HVFGNTEL 58

Query: 407 GDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGC 444
           G+ C +    +  +          +  +G   VV   C
Sbjct: 59  GESCVLMTGAVVGDELPGYTFIGCNNIIGHHAVVGVKC 96

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* Length = 240

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 20/107 (18%)

Query: 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV-KRSVIGRHCRIGSNVKVVNSVVM---- 401
           II    E+G    +  +  +  G+ +G+   +   +V+G    +G N  V    V+    
Sbjct: 99  IIRDHVEIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVI 158

Query: 402 -----NHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAG 443
                  V + D        I +N  + E V      VG+G VV+AG
Sbjct: 159 EPPSAKPVIVEDDVV-----IGANVVVLEGV-----TVGKGAVVAAG 195

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 29/155 (18%), Positives = 60/155 (38%), Gaps = 33/155 (21%)

Query: 319 IQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAEL--GSKTTVG--PHCMLGEGSQMGD 374
           I+AF + N  +  +   +  ++F  ++  I+        SK         ++GEG  +  
Sbjct: 284 IEAFYNANLGITKK--PVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVI-K 340

Query: 375 KCSVKRSVIGRHCRIGSNVKVVNSVVMN-------------------HVTIGDGCSIQGS 415
            C +  SV+G    I     + +S++M                     + IG  C I+ +
Sbjct: 341 NCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRA 400

Query: 416 VICSNAQLQERVAL------KDCQ-VGQGYVVSAG 443
           +I  NA++ + V +      ++      GY + +G
Sbjct: 401 IIDKNARIGDNVKIINKDNVQEAARETDGYFIKSG 435

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501

 Score = 51.8 bits (125), Expect = 3e-07
 Identities = 39/145 (26%), Positives = 57/145 (39%), Gaps = 22/145 (15%)

Query: 1   MDFQVVVLAGGT-----SKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
            D  V+VLA G      S           PK L  +A R +LS+VL  +     + LIVV
Sbjct: 11  GDTAVLVLAAGPGTRMRSDT---------PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVV 61

Query: 56  V-EGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK---DVLVVSG 111
           +         + G ++        ++VA     +GT  A+      L      +V+V SG
Sbjct: 62  LGHDHQRIAPLVGELADTLGRT--IDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSG 119

Query: 112 D--LVSDVPPGAVTAAHRRHDAVVT 134
           D  L+       + A HR   A VT
Sbjct: 120 DTPLLDADTLADLIATHRAVSAAVT 144

>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* Length = 236

 Score = 49.5 bits (119), Expect = 6e-07
 Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 33/155 (21%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
             +LAGGT  ++       +PK  L + +RP+L + +E+  L    + IVV    D    
Sbjct: 5   AGILAGGTGTRMGI---SNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSH 61

Query: 65  VGGWISAAYVDRLHVEVATVPEDVG-------TAGALRAIAHHLTAKD---VLV------ 108
               +   Y+      +       G           + AI  +        V+       
Sbjct: 62  AEDLV-DKYLPLYKERIIITK---GGADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRP 117

Query: 109 -VSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142
            ++  ++ D     +  A + HDAV T     V  
Sbjct: 118 FITLRMIQDN----IQLA-QNHDAVDTV----VEA 143

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456

 Score = 50.6 bits (122), Expect = 6e-07
 Identities = 25/142 (17%), Positives = 52/142 (36%), Gaps = 26/142 (18%)

Query: 1   MDFQVVVLAGGT-----SKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
                V+LA G      S           PK L  +A +P++ +V++       +++ ++
Sbjct: 4   KALSAVILAAGKGTRMYSDL---------PKVLHTIAGKPMVKHVIDTAHQLGSENIHLI 54

Query: 56  V-EGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK-DVLVVSGD- 112
              G D            ++    V      E +GTA A++  A       +++V+ GD 
Sbjct: 55  YGHGGDLM--------RTHLANEQVNWVLQTEQLGTAHAVQQAAPFFKDNENIVVLYGDA 106

Query: 113 -LVSDVPPGAVTAAHRRHDAVV 133
            L++      +  A   +   +
Sbjct: 107 PLITKETLEKLIEAKPENGIAL 128

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456

 Score = 44.4 bits (106), Expect = 5e-05
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 11/75 (14%)

Query: 348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIG 407
           +  + E G    +  + ++ EG             +G   +IG+   + N V+ N V I 
Sbjct: 262 LRGTLEHGKDVEIDVNVII-EG----------NVKLGDRVKIGTGCVLKNVVIGNDVEIK 310

Query: 408 DGCSIQGSVICSNAQ 422
               ++ S++   A 
Sbjct: 311 PYSVLEDSIVGEKAA 325

>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* Length = 223

 Score = 49.0 bits (118), Expect = 7e-07
 Identities = 35/155 (22%), Positives = 52/155 (33%), Gaps = 37/155 (23%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           M    VV A G+ ++L        PKA + +   P+L + L  L  S + D IV+     
Sbjct: 1   MATVAVVPAAGSGERL----RAGRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIA---- 52

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRA--IAHHLTAKD----VLV------ 108
                   +  A  D   +        + + G  R   +A  L A      VLV      
Sbjct: 53  --------VPPALTDESKLVFGGEDSVIVSGGVDRTESVALALEAAGDAEFVLVHDAARA 104

Query: 109 -VSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142
                L++ V    V A    H AVV      +  
Sbjct: 105 LTPPALIARV----VAALKEGHSAVVPG----LAP 131

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468

 Score = 49.4 bits (119), Expect = 2e-06
 Identities = 30/140 (21%), Positives = 47/140 (33%), Gaps = 28/140 (20%)

Query: 5   VVVLAGGT-----SKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV-EG 58
            ++LA G      S           PK L  VA   +L +V   +     +  + VV   
Sbjct: 14  AIILAAGKGTRMKSDL---------PKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHK 64

Query: 59  ADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD--VLVVSGD--LV 114
           A+        +      +   E  T  E +GT  A+      L       LV++GD  L+
Sbjct: 65  AEL-------VEEVLAGQ--TEFVTQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLI 115

Query: 115 SDVPPGAVTAAHRRHDAVVT 134
           +      +   H  H  V T
Sbjct: 116 TGESLKNLIDFHINHKNVAT 135

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468

 Score = 41.7 bits (99), Expect = 4e-04
 Identities = 10/65 (15%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIG 407
           I    E+  +  +  + +L   +++G +  +          IG+   + NS++    ++ 
Sbjct: 271 IDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMI-EESSVA 329

Query: 408 DGCSI 412
           DG ++
Sbjct: 330 DGVTV 334

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468

 Score = 41.3 bits (98), Expect = 5e-04
 Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 18/82 (21%)

Query: 345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSV-----IGRHCRIG--------- 390
           N I+    ++G++T +     +   S +G    +  S+     +     +G         
Sbjct: 286 NVILKGQTKIGAETVLTNGTYV-VDSTIGAGAVITNSMIEESSVADGVTVGPYAHIRPNS 344

Query: 391 ---SNVKVVNSVVMNHVTIGDG 409
              + V + N V +   +IG+ 
Sbjct: 345 SLGAQVHIGNFVEVKGSSIGEN 366

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459

 Score = 49.0 bits (118), Expect = 2e-06
 Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 26/142 (18%)

Query: 1   MDFQVVVLAGGT-----SKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
               VV+LA G      S           PK L P+A +P++ +V++       + + +V
Sbjct: 7   SSMSVVILAAGKGTRMYSDL---------PKVLHPLAGKPMVQHVIDAAMKLGAQHVHLV 57

Query: 56  V-EGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK-DVLVVSGD- 112
              G +             +    +      E +GT  A++  A H     D+L++ GD 
Sbjct: 58  YGHGGELL--------KKTLADPSLNWVLQAEQLGTGHAMQQAAPHFADDEDILMLYGDV 109

Query: 113 -LVSDVPPGAVTAAHRRHDAVV 133
            L+S      + AA       +
Sbjct: 110 PLISVDTLQRLLAAKPEGGIGL 131

>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} Length = 246

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 24/155 (15%), Positives = 53/155 (34%), Gaps = 35/155 (22%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
             +LAGG   ++    +  +PK  LP+  +P++ + +E+  L+   D I++    +    
Sbjct: 6   AQILAGGKGTRMG---NVSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNH 62

Query: 65  VGGWISAAYVDRLHVEVA-------TVPEDVGTAGALRAIAHHLTAKD---VLV------ 108
               I     D   V +        T+         +R +       D   ++       
Sbjct: 63  AEDNIKKYISDDRIVVIEGGEDRNETI------MNGIRFVEKTYGLTDDDIIVTHDAVRP 116

Query: 109 -VSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142
            ++  ++ +     + AA     AV T     +  
Sbjct: 117 FLTHRIIEEN----IDAA-LETGAVDTV----IEA 142

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A Length = 231

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 23/156 (14%), Positives = 45/156 (28%), Gaps = 40/156 (25%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
            ++ A G   +       + PK  + + ++ VL +VL   E     DL VVV   +    
Sbjct: 9   ALIPAAGIGVRF----GADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTF- 63

Query: 65  VGGWISAAYVDRLHVEVAT--------VPEDVGTAGALRAIAHHLTAKD---VLV----- 108
                                      V         +  +     A +   +LV     
Sbjct: 64  ---ADKVQTAFPQVRVWKNGGQTRAETV------RNGVAKLLETGLAAETDNILVHDAAR 114

Query: 109 --VSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142
             +  + ++ +    +  A    +  + A    VPV
Sbjct: 115 CCLPSEALARL----IEQAGNAAEGGILA----VPV 142

>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} Length = 255

 Score = 46.6 bits (109), Expect = 6e-06
 Identities = 6/52 (11%), Positives = 16/52 (30%), Gaps = 1/52 (1%)

Query: 5  VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          +V+   G S +         PK +L    + +  + +            + +
Sbjct: 2  IVIPMAGMSSRFFKA-GYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFI 52

>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} PDB: 3q7u_A* 3okr_A 2xwn_A* Length = 231

 Score = 46.4 bits (111), Expect = 6e-06
 Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 43/155 (27%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
            +V A G+ ++L    +  VPKA   +  + ++   ++ L  S + D +VV         
Sbjct: 10  AIVPAAGSGERL----AVGVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVA-------- 57

Query: 65  VGGWISAAYVDRLHVEVATVPEDVGTAG----------ALRAIAHHLTAKDVLV------ 108
               + A   D     +      V  AG          AL  ++     + VLV      
Sbjct: 58  ----VPADRTDEARQILGHRAMIV--AGGSNRTDTVNLALTVLSGTAEPEFVLVHDAARA 111

Query: 109 -VSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142
                LV+ V    V A    + AVV      +P+
Sbjct: 112 LTPPALVARV----VEALRDGYAAVVPV----LPL 138

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} Length = 496

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 17/128 (13%), Positives = 38/128 (29%), Gaps = 7/128 (5%)

Query: 322 FMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRS 381
            M+       +   +      A        A +     +    ++GE   +  +  +  +
Sbjct: 250 LMEFVEVRQEDFEEVFASGHMASGAGSASGASVSGYAVIKGDTVIGENVLVSQRAYLDNA 309

Query: 382 VIGRHCRIGSNVKVVNSVVMNHVTIGDG-----CSI-QGSVICSNAQLQERVALKDCQVG 435
            +G+      N  ++NS +  +     G       +        N+ LQ        ++G
Sbjct: 310 WMGKGSNAQENCYIINSRLERNCVTAHGGKIINAHLGDMIFTGFNSFLQGS-ESSPLKIG 368

Query: 436 QGYVVSAG 443
            G VV   
Sbjct: 369 DGCVVMPH 376

>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* Length = 228

 Score = 44.4 bits (106), Expect = 3e-05
 Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 37/152 (24%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
           V++LAGG  K++       +PK  +P+  +P+  Y             IVVV        
Sbjct: 7   VILLAGGQGKRM----KMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDI 62

Query: 65  VGGWISAAYVDRLHVEVATVPEDVG-------TAGALRAIAHHLTAKDVLV-------VS 110
                   Y + + V+++                  L+ I  +  ++ V +       V+
Sbjct: 63  F-----EEYEESIDVDLSFAI---PGKERQDSVYSGLQEIDVN--SELVCIHDSARPLVN 112

Query: 111 GDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142
            + V  V    +        A V      VP 
Sbjct: 113 TEDVEKV----LKDG-SAVGAAVLG----VPA 135

>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A Length = 236

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 28/159 (17%), Positives = 51/159 (32%), Gaps = 44/159 (27%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           +D   VV A G  +++      E PK  L + N+ +L + +  L        +V+     
Sbjct: 6   LDVCAVVPAAGFGRRM----QTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIA---- 57

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAG----------ALRAIAHHLTAKDVLV-- 108
                   IS        + +A  P+     G           L+A      A+ VLV  
Sbjct: 58  --------ISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAG---DAQWVLVHD 106

Query: 109 -----VSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142
                +  D ++ +    +  +       + A     PV
Sbjct: 107 AARPCLHQDDLARL----LALSETSRTGGILA----APV 137

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} Length = 212

 Score = 43.4 bits (102), Expect = 4e-05
 Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 40/126 (31%)

Query: 330 IGE----ANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQM---------GDKC 376
           +G+    + +  G++F      +HP  +   K  +G  C +G G+            D  
Sbjct: 27  VGKHSYYSGYYHGHSFDDCVRYLHPERDDVDKLVIGSFCSIGSGAVFMMAGNQGHRSDWI 86

Query: 377 SV---------------------KRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI-QG 414
           S                        ++IG    IG+       ++M  V IG G  I   
Sbjct: 87  STFPFFYQDNDNFADARDGFTRSGDTIIGHDVWIGTEA-----MIMPGVKIGHGAIIASR 141

Query: 415 SVICSN 420
           SV+  +
Sbjct: 142 SVVTKD 147

>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} Length = 236

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 35/154 (22%), Positives = 51/154 (33%), Gaps = 46/154 (29%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           M+  V++ A G   +L        PKA L V  R +L + L     +     ++V     
Sbjct: 24  MEVSVLIPAAGNGLRL-----GRGPKAFLQVGGRTLLEWTLAAFRDA---AEVLVA---- 71

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRA--IAHHLTAKD---VLV------- 108
                   +         +    +    G  GA R   +A  L A     VLV       
Sbjct: 72  --------LPPGAEPPKGLGAVFLE---G--GATRQASVARLLEAASLPLVLVHDVARPF 118

Query: 109 VSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142
           VS  LV+      V  A +R  A V      +PV
Sbjct: 119 VSRGLVA-----RVLEAAQRSGAAVPV----LPV 143

>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* Length = 201

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 19/131 (14%)

Query: 6   VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRV 65
           VVLAGG ++++       V K LL +  +P+  +V + L  + +  ++V         + 
Sbjct: 10  VVLAGGKARRM-----GGVDKGLLELNGKPLWQHVADALM-TQLSHVVVNANRHQEIYQA 63

Query: 66  GGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAV--- 122
            G         L V   ++ +  G    + ++      +  L    D    +PP      
Sbjct: 64  SG---------LKVIEDSLADYPGPLAGMLSVMQQEAGEWFLFCPCDTP-YIPPDLAARL 113

Query: 123 TAAHRRHDAVV 133
               +    V 
Sbjct: 114 NHQRKDAPVVW 124

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} Length = 219

 Score = 43.0 bits (101), Expect = 7e-05
 Identities = 23/115 (20%), Positives = 37/115 (32%), Gaps = 36/115 (31%)

Query: 337 SGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQ------------------------- 371
           S    S ++ +++    +G K  +G  C +G G+                          
Sbjct: 45  SKRGESFEDQVLYHYEVIGDKLIIGRFCSIGPGTTFIMNGANHRMDGSTYPFHLFRMGWE 104

Query: 372 -----MGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI-QGSVICSN 420
                + D        IG    IG +V      +M  V IGDG  I   +V+  N
Sbjct: 105 KYMPSLKDLPLKGDIEIGNDVWIGRDV-----TIMPGVKIGDGAIIAAEAVVTKN 154

>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 Length = 234

 Score = 42.9 bits (102), Expect = 7e-05
 Identities = 29/155 (18%), Positives = 48/155 (30%), Gaps = 43/155 (27%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
            ++LA G  +++    S+ VPK  L +  R +  Y L     S   D +V+V        
Sbjct: 16  AILLAAGKGERM----SENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIV-------- 63

Query: 65  VGGWISAAYVDRLHVEVATVPEDVGTAG----------ALRAIAHHLTAKDVLV------ 108
                   + + +   V          G          AL  +    +   VLV      
Sbjct: 64  ----TRREWFEVVEKRVFHEKVLGIVEGGDTRSQSVRSALEFLEKF-SPSYVLVHDSARP 118

Query: 109 -VSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142
            +    VS+V    +  A R   A   A    +  
Sbjct: 119 FLRKKHVSEV----LRRA-RETGAATLA----LKN 144

>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* Length = 371

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 1  MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           +  +++LA G S +     + +V K  L + N P+  Y  + L        IVV     
Sbjct: 2  SEMSLIMLAAGNSTRF----NTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNI 57

Query: 61 AALR 64
            ++
Sbjct: 58 TYMK 61

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* Length = 205

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 17/118 (14%), Positives = 41/118 (34%), Gaps = 28/118 (23%)

Query: 318 SIQAFMDINRDV-IGEANHLSGYNF--SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGD 374
            I  F  ++  V IG  +H++ Y      +  I     E+     +    ++        
Sbjct: 60  RIDDFCILSGKVTIGSYSHIAAYTALYGGEVGI-----EMYDFANISSRTIVYAAIDDFS 114

Query: 375 --------------KCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVI 417
                              + ++ +H  IG++      ++  +V IG+G ++   S++
Sbjct: 115 GNALMGPTIPNQYKNVKTGKVILKKHVIIGAHS-----IIFPNVVIGEGVAVGAMSMV 167

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* Length = 205

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 18/138 (13%), Positives = 33/138 (23%), Gaps = 50/138 (36%)

Query: 345 NNIIHPSA--------ELGSKTTVGPHCMLGEGSQMGDKCSVKRSV----------IGRH 386
           N +I   A         +G+   +   C+L     +G    +              +   
Sbjct: 38  NVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDF 97

Query: 387 CRIGSNVKVVNSV--------------------VMNHVTIGDGCSI-QGSVICSNAQLQE 425
             I S   V  ++                        V +     I   S+I        
Sbjct: 98  ANISSRTIVYAAIDDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSII-------- 149

Query: 426 RVALKDCQVGQGYVVSAG 443
                +  +G+G  V A 
Sbjct: 150 ---FPNVVIGEGVAVGAM 164

>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} Length = 197

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 22/140 (15%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           M+  V++LA G  K+          K L  + N P++   +      +++ +I+V +  +
Sbjct: 1   MNIGVIILAAGEGKRF------GGDKLLAKIDNTPIIMRTIRI--YGDLEKIIIVGKYVN 52

Query: 61  AALRVGGWISAAYVDRLHVEVATVPE-DVGTAGALRAIAHHLTAKD-VLVVSGD--LVSD 116
             L +           +   V   P  + G + +L+         D VLV  GD   V+ 
Sbjct: 53  EMLPL----------LMDQIVIYNPFWNEGISTSLKLGLRFFKDYDAVLVALGDMPFVTK 102

Query: 117 VPPGAVTAAHRRHDAVVTAM 136
                +    + +   V   
Sbjct: 103 EDVNKIINTFKPNCKAVIPT 122

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* Length = 212

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 18/127 (14%), Positives = 38/127 (29%), Gaps = 41/127 (32%)

Query: 330 IGE----ANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQ-------------- 371
           +G     + +  G++F      + P  +   K  +G  C +G G+               
Sbjct: 25  VGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAFIMAGNQGHRAEWA 84

Query: 372 -----------------MGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI-Q 413
                            +        ++IG    IG+       + M  V +G G  I  
Sbjct: 85  STFPFHFMHEEPAFAGAVNGYQPAGDTLIGHEVWIGTEA-----MFMPGVRVGHGAIIGS 139

Query: 414 GSVICSN 420
            +++  +
Sbjct: 140 RALVTGD 146

>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* Length = 259

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 32/158 (20%), Positives = 64/158 (40%), Gaps = 21/158 (13%)

Query: 4   QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLI--------VV 55
           + V+LAGG   +L    +   PK ++ +  +P+L ++++   +  IKD I        V+
Sbjct: 4   KAVILAGGLGTRLSEE-TIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVI 62

Query: 56  VE--------GADAALRVGG---WISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK 104
            E         +D    +      +    V+  +V +    +   T G L+ +A ++   
Sbjct: 63  KEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDD 122

Query: 105 DVLVVS-GDLVSDVPPGAVTAAHRRHDAVVTAMICSVP 141
           +  + + GD V+D+   A    H+ H    T      P
Sbjct: 123 EAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFPP 160

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	456
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	100.0
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	100.0
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	100.0
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	100.0
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	100.0
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	100.0
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	100.0
3juk_A	281	UDP-glucose pyrophosphorylase (GALU); transfer; HE	99.97
4ecm_A	269	Glucose-1-phosphate thymidylyltransferase; HET: DA	99.96
1tzf_A	259	Glucose-1-phosphate cytidylyltransferase; nucleoti	99.95
2ux8_A	297	Glucose-1-phosphate uridylyltransferase; UGPG, GAL	99.95
3pnn_A	303	Conserved domain protein; structural genomics, PSI	99.94
2e3d_A	302	UTP--glucose-1-phosphate uridylyltransferase; UDP-	99.94
2pa4_A	323	UTP-glucose-1-phosphate uridylyltransferase; phosp	99.94
1fxo_A	293	Glucose-1-phosphate thymidylyltransferase; rhamnos	99.94
4evw_A	255	Nucleoside-diphosphate-sugar pyrophosphorylase; st	99.94
1lvw_A	295	Glucose-1-phosphate thymidylyltransferase; protein	99.93
1mc3_A	296	Glucose-1-phosphate thymidylyltransferase; glucose	99.93
2qh5_A	308	PMI, ALGA, mannose-6-phosphate isomerase; structur	99.93
2x65_A	336	Mannose-1-phosphate guanylyltransferase; nucleotid	99.9
3oam_A	252	3-deoxy-manno-octulosonate cytidylyltransferase; c	99.89
2cu2_A	337	Putative mannose-1-phosphate guanylyl transferase;	99.88
1jyk_A	254	LICC protein, CTP:phosphocholine cytidylytransfera	99.88
3k8d_A	264	3-deoxy-manno-octulosonate cytidylyltransferase; K	99.85
3tqd_A	256	3-deoxy-manno-octulosonate cytidylyltransferase; c	99.84
2y6p_A	234	3-deoxy-manno-octulosonate cytidylyltransferase; l	99.79
4fcu_A	253	3-deoxy-manno-octulosonate cytidylyltransferase; s	99.78
1h7e_A	245	3-deoxy-manno-octulosonate cytidylyltransferase; n	99.77
1vic_A	262	3-deoxy-manno-octulosonate cytidylyltransferase; s	99.76
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	99.74
3f1c_A	246	Putative 2-C-methyl-D-erythritol 4-phosphate cytid	99.72
1ezi_A	228	CMP-N-acetylneuraminic acid synthetase; homodimer,	99.7
2icy_A	469	Probable UTP-glucose-1-phosphate uridylyltransfera	99.7
2vsh_A	236	TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly	99.7
2xwl_A	223	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	99.7
2dpw_A	232	Hypothetical protein TTHA0179; transferase, struct	99.69
2xme_A	232	CTP-inositol-1-phosphate cytidylyltransferase; CDP	99.69
2yc3_A	228	2-C-methyl-D-erythritol 4-phosphate cytidylyltran	99.67
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.64
1vgw_A	231	4-diphosphocytidyl-2C-methyl-D-erythritol synthas;	99.64
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.62
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.61
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.6
1qwj_A	229	Cytidine monophospho-N-acetylneuraminic acid synth	99.6
3rsb_A	196	Adenosylcobinamide-phosphate guanylyltransferase;	99.59
1i52_A	236	4-diphosphocytidyl-2-C-methylerythritol synthase;	99.59
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.58
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.58
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.58
2wee_A	197	MOBA-related protein; unknown function; 1.65A {Myc	99.58
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.57
2waw_A	199	MOBA relate protein; unknown function; HET: PGE; 1	99.57
1vpa_A	234	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	99.56
3q80_A	231	2-C-methyl-D-erythritol 4-phosphate cytidyltransf;	99.56
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.56
2i5k_A	488	UTP--glucose-1-phosphate uridylyltransferase; LEFT	99.56
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.55
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.55
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.54
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.54
2px7_A	236	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	99.53
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	99.53
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	99.53
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	99.53
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.53
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.53
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.53
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	99.52
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.52
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	99.52
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.52
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.52
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.52
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.51
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	99.51
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.5
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.5
3d5n_A	197	Q97W15_sulso; NESG, SSR125, structural genomics, P	99.5
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	99.5
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.49
1jv1_A	505	Glcnac1P uridyltransferase isoform 1: AGX1; nucleo	99.49
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.48
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	99.47
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.47
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	99.47
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	99.47
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.46
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.46
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.46
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.46
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	99.46
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	99.45
1e5k_A	201	Molybdopterin-guanine dinucleotide biosynthesis pr	99.45
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.45
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.44
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.44
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.43
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.43
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	99.43
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.42
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.41
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.41
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	99.41
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.4
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.4
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	99.4
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.4
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.39
1w55_A	371	ISPD/ISPF bifunctional enzyme; biosynthetic pathwa	99.39
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.39
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.38
2e8b_A	201	Probable molybdopterin-guanine dinucleotide biosy	99.37
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.36
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.36
3ngw_A	208	Molybdopterin-guanine dinucleotide biosynthesis P	99.36
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.35
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.35
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.35
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.34
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.31
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.29
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.28
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.28
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	99.27
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.24
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.24
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.23
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	99.22
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.21
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.21
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	99.21
2oeg_A	505	UTP-glucose-1-phosphate uridylyltransferase 2, put	99.2
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	99.2
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	99.18
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	99.16
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	99.15
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	99.14
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	99.13
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	99.11
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.1
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	99.1
2yqc_A	486	UDP-N-acetylglucosamine pyrophosphorylase; uridine	99.08
3oc9_A	405	UDP-N-acetylglucosamine pyrophosphorylase; structu	99.08
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	99.05
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	99.04
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	99.04
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	99.04
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.04
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	99.04
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.03
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	99.01
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.01
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.0
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	98.95
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	98.92
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	98.9
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	98.89
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	98.83
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	98.76
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	98.72
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	98.71
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	98.71
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	98.62
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	98.62
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	98.49
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	98.36
3r3i_A	528	UTP--glucose-1-phosphate uridylyltransferase; ross	97.88
2i5e_A	211	Hypothetical protein MM_2497; APC86122, methanosar	97.64
3gue_A	484	UTP-glucose-1-phosphate uridylyltransferase 2; pho	96.07
3ogz_A	630	UDP-sugar pyrophosphorylase; LEFT handed beta heli	95.69
1qg8_A	255	Protein (spore coat polysaccharide biosynthesis P	87.8
3bcv_A	240	Putative glycosyltransferase protein; protein stru	85.37
3cgx_A	242	Putative nucleotide-diphospho-sugar transferase; Y	83.98

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=100.00  E-value=2.4e-45  Score=373.73  Aligned_cols=352  Identities=20%  Similarity=0.335  Sum_probs=250.0

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCc-chHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhc---cC--
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY---VD--   75 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gk-pli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~---~~--   75 (456)
                      +|+|||||||.|+||+|| |...||+|+|++|+ |||+|+|++|.++|+++++|++++..  +.+.+++.+.+   ..  
T Consensus        20 ~~~avILAaG~gtRl~pl-T~~~pK~llpi~g~~pli~~~l~~l~~~g~~~i~vv~~~~~--~~i~~~~~~~~~~~~~~~   96 (451)
T 1yp2_A           20 SVLGIILGGGAGTRLYPL-TKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS--ASLNRHLSRAYASNMGGY   96 (451)
T ss_dssp             HEEEEEC------CCTTT-TTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCC--HHHHHHHHHHCC------
T ss_pred             ceEEEEECCCCCCcccch-hcCCcceeeEECCcceeHHHHHHHHHHCCCCEEEEEeccCH--HHHHHHHhhhhhcccccc
Confidence            489999999999999999 88999999999999 99999999999999999999998653  24544443321   10  


Q ss_pred             --ccceEEEEc--cC-----CcChHHHHHHHHhcCC---CCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccC
Q 012817           76 --RLHVEVATV--PE-----DVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVS  143 (456)
Q Consensus        76 --~~~i~~~~~--~~-----~~gt~~al~~~~~~l~---~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~  143 (456)
                        ...+.+...  ..     ..|++++++.+++.+.   +++|++++||++++.++.++++.|++.++++|+++.+.+..
T Consensus        97 ~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~  176 (451)
T 1yp2_A           97 KNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEK  176 (451)
T ss_dssp             --CCEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEECHH
T ss_pred             cccCcEEEecccccccccccccCcHHHHHHHHHHHHhcCCCeEEEecCcEEEcCCHHHHHHHHHHcCCcEEEEEEEcChh
Confidence              001334321  11     3799999999887764   46799999999999999999999999899998887765321


Q ss_pred             CCccCCCCCCcccCCCCCcccEEEecCCCcEEEEeecccccc--cccccchHHHhhccee-EEecCCccceEEeechHHH
Q 012817          144 GLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELE--KDTRIRKSILRAVGQM-DIRADLMDAHMYAFNRSVL  220 (456)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~--k~~~~~~~~~~~~~~~-~~~~~~~~~giYi~~~~vl  220 (456)
                      +               +..|+++.+|++++ +..+.++++.+  +...++..++.+++.. ...++++++|+|+|++++|
T Consensus       177 ~---------------~~~~g~v~~d~~~~-v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l  240 (451)
T 1yp2_A          177 R---------------ATAFGLMKIDEEGR-IIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVM  240 (451)
T ss_dssp             H---------------HTTSEEEEECTTSB-EEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHH
T ss_pred             h---------------cccCCEEEECCCCC-EEEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHH
Confidence            1               45689999997766 45555433211  0011111222111110 0024678999999999998


Q ss_pred             HHHHhcC-ccccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcc
Q 012817          221 QEVLDQK-DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRT  299 (456)
Q Consensus       221 ~~~~~~~-~~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (456)
                      ..++++. ....++.+|+++.+++++                                                      
T Consensus       241 ~~~l~~~~~~~~~~~~~~l~~~i~~g------------------------------------------------------  266 (451)
T 1yp2_A          241 LNLLRDKFPGANDFGSEVIPGATSLG------------------------------------------------------  266 (451)
T ss_dssp             HHHHHTTCTTCCCTTTTHHHHHHHTT------------------------------------------------------
T ss_pred             HHHHHhhcccccchHhhHHHHHHhcC------------------------------------------------------
Confidence            7666543 233566678888877542                                                      


Q ss_pred             eeeEEEEecCcchhhcccCHHHHHHHhHhhhccc-ccc---CCCcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCC
Q 012817          300 HKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEA-NHL---SGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDK  375 (456)
Q Consensus       300 ~~~~~yi~~~~~~~~~i~~~~~y~~~~~~~l~~~-~~~---~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~  375 (456)
                      .++.+|  ...++|.+++++++|++++++++.+. ...   .....++....++|++.| .++.| .++.||++|.|+. 
T Consensus       267 ~~v~~~--~~~~~w~digt~~~l~~a~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i-~~~~I-~~~~Ig~~~~I~~-  341 (451)
T 1yp2_A          267 MRVQAY--LYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKM-LDADV-TDSVIGEGCVIKN-  341 (451)
T ss_dssp             CCEEEE--ECCSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCCCCCCCEEE-EEEEE-EEEEECTTCEEEE-
T ss_pred             CceEEE--EeCCEEEECCCHHHHHHHHHHHhcccccchhccCCCCeeccCCccCCCeEE-cceEE-eCeEECCCCEEcc-
Confidence            223444  45679999999999999999987653 111   112223344555555555 45666 5688888888886 


Q ss_pred             CeEeeeEECCCCEECCCcEEeCeEECCC-------------------CEECCCcEEcCeEECCCCEECCCcEecC
Q 012817          376 CSVKRSVIGRHCRIGSNVKVVNSVVMNH-------------------VTIGDGCSIQGSVICSNAQLQERVALKD  431 (456)
Q Consensus       376 ~~i~~s~Ig~~~~ig~~~~i~~s~i~~~-------------------~~ig~~~~i~~~ii~~~~~I~~~~~i~~  431 (456)
                      +.|.+++||++|.||++|.|.+++++++                   +.||++|+|++++|+++|.||++++|.+
T Consensus       342 ~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig~~~~IG~~~~i~~  416 (451)
T 1yp2_A          342 CKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIIN  416 (451)
T ss_dssp             EEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEECTTCEECC
T ss_pred             eEEeccEECCCCEECCCCEEcCceEECCCCcccccccccccccCceeEEECCCCEEeccEeCCCcEECCCCEEeC
Confidence            7888999999999999999999998888                   9999999999999999999999998864

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=100.00  E-value=8.7e-43  Score=351.49  Aligned_cols=343  Identities=17%  Similarity=0.237  Sum_probs=239.5

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCc-chHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhc-cC----
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-VD----   75 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gk-pli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~-~~----   75 (456)
                      +|+|||||||.|+||+|+ |...||+|+|++|+ |||+|+|++|.++|+++++|++++..  +.+.+++.+.+ ..    
T Consensus        12 ~~~avILAaG~gtRl~pl-T~~~pK~llpi~gk~pli~~~l~~l~~~gi~~i~vv~~~~~--~~i~~~~~~~~~~~~~~~   88 (420)
T 3brk_X           12 DAMAYVLAGGRGSRLKEL-TDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKA--HSLIRHLQRGWDFFRPER   88 (420)
T ss_dssp             GEEEEEEECCCCGGGGGG-GSSSCGGGSEETTTEETHHHHHHHHHHTTCCEEEEEECTTC--HHHHHHHHHHSCCCCGGG
T ss_pred             ceEEEEEcCCCCCccchh-hcCCcccccccCCCCcHHHHHHHHHHhCCCCeEEEEeCCCh--HHHHHHHhhhhccccccc
Confidence            478999999999999999 88999999999999 99999999999999999999998642  35555554421 11    


Q ss_pred             ccceEEEEcc----CC---cChHHHHHHHHhcCC---CCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCC
Q 012817           76 RLHVEVATVP----ED---VGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGL  145 (456)
Q Consensus        76 ~~~i~~~~~~----~~---~gt~~al~~~~~~l~---~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~  145 (456)
                      ...+.+....    ++   .|++++++.+++.+.   .+++++++||.+++.++.++++.|++.++++++++.+.+..+ 
T Consensus        89 ~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~-  167 (420)
T 3brk_X           89 NESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRME-  167 (420)
T ss_dssp             TCEEEEECCC-------CCCCHHHHHHTTHHHHHHHCCSEEEEEESSCEECBCTHHHHHHHHHTTCSEEEEEEEEETTG-
T ss_pred             cCCEEEeCccccccCCccccCCHHHHHHHHHHHHhcCCCEEEEecccEEEchHHHHHHHHHHHcCCeEEEEEeecCccc-
Confidence            0123343211    23   799999998877664   367999999998888999999999998899988887654222 


Q ss_pred             ccCCCCCCcccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHh
Q 012817          146 SEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (456)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~  225 (456)
                                    +..|+++.+|++++ +..+.+++.....    ..  .     ...+.++++|+|+|++++|.++++
T Consensus       168 --------------~~~~g~v~~d~~g~-v~~~~ekp~~~~~----~~--~-----~~~~~~~~~Giy~~~~~~l~~~l~  221 (420)
T 3brk_X          168 --------------ATGFGVMHVNEKDE-IIDFIEKPADPPG----IP--G-----NEGFALASMGIYVFHTKFLMEAVR  221 (420)
T ss_dssp             --------------GGGSEEEEECTTSB-EEEEEESCSSCCC----BT--T-----BTTEEEEEEEEEEEEHHHHHHHHT
T ss_pred             --------------cCcccEEEECCCCc-EEEeEeCCCcccc----cc--c-----cccceEEeeeeEEEeHHHHHHHHH
Confidence                          45789999887776 4455432211110    00  0     012567899999999999876665


Q ss_pred             cCc----cccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCccee
Q 012817          226 QKD----KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHK  301 (456)
Q Consensus       226 ~~~----~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (456)
                      +..    ...++..|+++.+++++-                                                       
T Consensus       222 ~~~~~~~~~~~~~~d~l~~li~~g~-------------------------------------------------------  246 (420)
T 3brk_X          222 RDAADPTSSRDFGKDIIPYIVEHGK-------------------------------------------------------  246 (420)
T ss_dssp             SSCCC----------CTTHHHHHSC-------------------------------------------------------
T ss_pred             HhcccCCccccchHHHHHHHhhhCc-------------------------------------------------------
Confidence            421    123566788888876531                                                       


Q ss_pred             eEEEEe---------cCcchhhcccCHHHHHHHhHhhhccccccCCC---cccCCCceeCCCCEeCC-----CcEECCCC
Q 012817          302 CCVYIA---------SNSKYCVRLNSIQAFMDINRDVIGEANHLSGY---NFSAQNNIIHPSAELGS-----KTTVGPHC  364 (456)
Q Consensus       302 ~~~yi~---------~~~~~~~~i~~~~~y~~~~~~~l~~~~~~~~~---~~~~~~~~i~~~~~i~~-----~~~i~~~~  364 (456)
                      +.+|..         +..+||.+++++++|.++++.++........+   ..+.....++|++.+++     ++.+ .++
T Consensus       247 v~~~~~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~~i-~~~  325 (420)
T 3brk_X          247 AVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSA-VSS  325 (420)
T ss_dssp             EEEEEHHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTSSSCSSCTTCCSSCCCCCCCCCCCCEEECBCSSCBCEE-ESC
T ss_pred             EEEEEeccccccccccCCCEEEECCCHHHHHHHHHHHhCCCchhhcCCCCCceeeccccCCCcEEecccccCCcEe-cCC
Confidence            122221         11569999999999999999988754322211   11223444556666555     4444 577


Q ss_pred             EECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecC
Q 012817          365 MLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD  431 (456)
Q Consensus       365 ~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~  431 (456)
                      .||++|.| +++.|.+|+||++|.||++|.|.+|+|+++|.||++|.|.+|+||++|.|+++++|.+
T Consensus       326 ~ig~~~~I-~~~~i~~~~ig~~~~I~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~i~~~~~i~~  391 (420)
T 3brk_X          326 VVSGDCII-SGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSNVVIDHGVVIPEGLIVGE  391 (420)
T ss_dssp             EECSSCEE-ESCEEESCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEECTTCEECTTCEESS
T ss_pred             EECCCCEE-cCCEEeCcEEcCCCEECCCCEEcceEEcCCCEECCCCEEeceEECCCCEECCCCEEeC
Confidence            78888888 7777777888888888888888888888888888888887788888888888777754

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=100.00  E-value=4.2e-41  Score=346.39  Aligned_cols=355  Identities=20%  Similarity=0.253  Sum_probs=248.1

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhc-cCccceEE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-VDRLHVEV   81 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~-~~~~~i~~   81 (456)
                      +.+||||||+|+||+|+    .||||+|++|||||+|+|++|.++|+++++|++++.  .+.+++++.+.. .....+.+
T Consensus        13 ~~vvILAaG~GtRm~~~----~pK~l~pv~gkp~i~~~l~~~~~~g~~~i~vv~~~~--~~~i~~~~~~~~~~~~~~i~~   86 (501)
T 3st8_A           13 TAVLVLAAGPGTRMRSD----TPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHD--HQRIAPLVGELADTLGRTIDV   86 (501)
T ss_dssp             EEEEEEECSCCGGGCCS----SCGGGCEETTEEHHHHHHHHHHHHCCSEEEEEECTT--HHHHHHHHHHHHHHHTSCCEE
T ss_pred             ceEEEECCcCcccCCCC----CCHHHeEECChhHHHHHHHHHHhCCCCEEEEEeCCC--HHHHHHHHHHHHHhcCCcEEE
Confidence            56799999999999998    399999999999999999999999999999999866  356777765421 11245788


Q ss_pred             EEccCCcChHHHHHHHHhcCCC---CcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCccc
Q 012817           82 ATVPEDVGTAGALRAIAHHLTA---KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK  156 (456)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~l~~---~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~  156 (456)
                      +.+++++||++|++++++.+.+   ++++++.||.  +....+.++++.|++.++++++++.+.+               
T Consensus        87 ~~q~~~lGTa~Av~~a~~~l~~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~~~~~---------------  151 (501)
T 3st8_A           87 ALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTTTLD---------------  151 (501)
T ss_dssp             EECSSCCCHHHHHHHHHTTSCTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECS---------------
T ss_pred             EEcCCCCCcHHHHHHHHHHhccccccceeeecCcceeecHHHHHHHHHHHhhccccceEeeeccC---------------
Confidence            8899999999999999998864   3589999993  3445689999999999999999988765               


Q ss_pred             CCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcC----ccccc
Q 012817          157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK----DKFQS  232 (456)
Q Consensus       157 ~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~----~~~~s  232 (456)
                        +|..||.+..|+++++ ..+.|+.+    . .+.         +...+++|+|+|+|++++|..++.+.    ...+.
T Consensus       152 --dp~~yG~i~~~~~g~v-~~ivEk~~----~-~~~---------~~~i~~in~Giy~f~~~~l~~~l~~l~~~n~~~e~  214 (501)
T 3st8_A          152 --DPFGYGRILRTQDHEV-MAIVEQTD----A-TPS---------QREIREVNAGVYAFDIAALRSALSRLSSNNAQQEL  214 (501)
T ss_dssp             --CCTTSCEEEECTTCCE-EEEECGGG----C-CHH---------HHHCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSC
T ss_pred             --CchhccccccccceeE-EeeccccC----C-Chh---------hccceeeeceeeeecchhHHHhhhhhccccccccc
Confidence              2778999999998875 44543221    1 011         12467899999999999999887642    22344


Q ss_pred             cccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcch
Q 012817          233 LKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKY  312 (456)
Q Consensus       233 ~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~  312 (456)
                      +..|++..+...+......                                                      .......
T Consensus       215 yltd~i~~~~~~g~~v~~~------------------------------------------------------~~~~~~~  240 (501)
T 3st8_A          215 YLTDVIAILRSDGQTVHAS------------------------------------------------------HVDDSAL  240 (501)
T ss_dssp             CTTHHHHHHHHTTCCEEEE------------------------------------------------------ECSSGGG
T ss_pred             chhhHHHHHHhcCceEEEE------------------------------------------------------eccchhh
Confidence            5678887776654322111                                                      0011111


Q ss_pred             hhcccCHHHHHHHh---------Hhhh------cc-ccccCCCcccCCCc------------------------------
Q 012817          313 CVRLNSIQAFMDIN---------RDVI------GE-ANHLSGYNFSAQNN------------------------------  346 (456)
Q Consensus       313 ~~~i~~~~~y~~~~---------~~~l------~~-~~~~~~~~~~~~~~------------------------------  346 (456)
                      +..+++...+.+..         ..++      +. ...+.....+++++                              
T Consensus       241 ~~g~n~~~~l~~~~~~~~~r~~~~~~~~gv~~~dp~~~~i~~dv~IG~dv~I~~~v~i~g~~~Ig~~~~I~~~~~i~~~~  320 (501)
T 3st8_A          241 VAGVNNRVQLAELASELNRRVVAAHQLAGVTVVDPATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVA  320 (501)
T ss_dssp             GCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEECTTCEECTTCEECSSEEEETTCEECTTCEECSSCEEEEEE
T ss_pred             hcccccHHHHHHHHHHhhhhhhhhhcccCceeeeeccccccCceEECCcceecceeeecCccccccceEEeeceeecCce
Confidence            11112211111110         0000      00 00000000111111                              


Q ss_pred             ---------------eeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcE
Q 012817          347 ---------------IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCS  411 (456)
Q Consensus       347 ---------------~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~  411 (456)
                                     .+++.+.+++.+.+++++.|+++|.||.++.+++|+||++|.|++.+++++|+|+++|.||.++.
T Consensus       321 i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i~~~v~IG~~v~ik~s~Ig~gskI~~~~~i~d~~Ig~~v~IG~g~i  400 (501)
T 3st8_A          321 VGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGADGKLGAFVEVKNSTIGTGTKVPHLTYVGDADIGEYSNIGASSV  400 (501)
T ss_dssp             ECTTCEECSEEEEEEEECTTCEECSSEEECTTCEECTTCEEEETEEEESCEECTTCEEEESCEEESEEECSSCEECTTCE
T ss_pred             EecCCEEEeecccccccccccccCCceeecCCcEEccccccCCeEEEccceecCCcEEeccceecCceEcCCCEECCCEE
Confidence                           12334445555666667777777777777778889999999999999999999999999999998


Q ss_pred             EcC--------eEECCCCEECCCcEe-cCeEECCCCEECCCcEEcCC
Q 012817          412 IQG--------SVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKGE  449 (456)
Q Consensus       412 i~~--------~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~~~  449 (456)
                      +.|        ++||++|.||.++.| .++.||+++.|++|+.+...
T Consensus       401 ~~n~dg~~~~~t~IGd~~~iG~~~~l~~~v~Ig~~~~i~ags~v~~d  447 (501)
T 3st8_A          401 FVNYDGTSKRRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVVRED  447 (501)
T ss_dssp             EECBCSSSBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEECSC
T ss_pred             EEcccCCcccCCEECCCcEECCCCEEcCCcEECCCCEECCCCEECcc
Confidence            854        899999999999976 48999999999999887543

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=100.00  E-value=4.1e-40  Score=330.22  Aligned_cols=316  Identities=20%  Similarity=0.344  Sum_probs=199.8

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~   82 (456)
                      |+|||||||.|+||+|+ |.+.||+|+|++|||||+|++++|.++++++++|++++.     +.+++.+..   .++.++
T Consensus         1 m~aiIlA~G~g~R~~pl-t~~~~K~ll~i~g~pli~~~l~~l~~~~~~~i~vv~~~~-----i~~~~~~~~---~~i~~~   71 (401)
T 2ggo_A            1 MKAFILAAGSGERLEPI-THTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSK-----NKEYFEKKL---KEISIV   71 (401)
T ss_dssp             CEEEEECCCCCGGGTTG-GGTSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECGG-----GHHHHHHHC---TTCEEE
T ss_pred             CeEEEEcCcCccccCcc-cCCCCcceeeECCEeHHHHHHHHHHHCCCCEEEEEeCHH-----HHHHhhccC---CcEEEE
Confidence            68999999999999999 889999999999999999999999999999999999754     333333321   135666


Q ss_pred             EccC-CcChHHHHHHHHhcCCCCcEEEEcCCcccC--CChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCC
Q 012817           83 TVPE-DVGTAGALRAIAHHLTAKDVLVVSGDLVSD--VPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK  159 (456)
Q Consensus        83 ~~~~-~~gt~~al~~~~~~l~~~~~lv~~~D~i~~--~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~  159 (456)
                      ..+. +.|++++++.+.+   .++++++.||..+.  .+++++++     .+++++++.+.+  +               
T Consensus        72 ~~~~~~~g~~~~l~~~~~---~~~~lv~~~D~~~~~~~~~~~l~~-----~~~~~i~~~~~~--~---------------  126 (401)
T 2ggo_A           72 TQKDDIKGTGAAILSAKF---NDEALIIYGDLFFSNEKEICNIIT-----LKENAIIGVKVS--N---------------  126 (401)
T ss_dssp             ECCTTCCBSTTTGGGCCC---SSEEEEEETTEEESCSHHHHHHTT-----CSSEEEEEEECS--C---------------
T ss_pred             eCCCCCCChHHHHHHhcc---CCCEEEEeCccccccHHHHHHHHH-----hcCCEEEEEEcC--C---------------
Confidence            5555 6788888876654   47799999997654  45666665     355666665543  1               


Q ss_pred             CCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCcc--ccc-cccc
Q 012817          160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK--FQS-LKQD  236 (456)
Q Consensus       160 ~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~--~~s-~~~d  236 (456)
                      +..|+++..++++++ ..+.+     |+.             ...+.++++|+|+|++++|+.+ ++...  ... ...|
T Consensus       127 ~~~~~~v~~~~~g~v-~~~~e-----k~~-------------~~~~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~~~~~  186 (401)
T 2ggo_A          127 PKDYGVLVLDNQNNL-SKIIE-----KPE-------------IPPSNLINAGIYKLNSDIFTYL-DKISISERGELELTD  186 (401)
T ss_dssp             CSSSCEEEECTTSSE-EEEEC-----SCS-------------SCSCSEEEEEEEEEETHHHHHH-HHSCCCSSSCBCHHH
T ss_pred             CcceeEEEECCCCeE-EEEEE-----CCC-------------CCCCcEEEEEEEEEcHHHHHHh-hhcCcCCCCceEHHH
Confidence            445788888877664 44432     210             1135688999999999998754 32210  001 1136


Q ss_pred             hhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcchhhcc
Q 012817          237 VLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRL  316 (456)
Q Consensus       237 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~~~i  316 (456)
                      +++.+ ..+                                                      .++..+  ...++|.++
T Consensus       187 ~~~~~-~~g------------------------------------------------------~~v~~~--~~~~~~~dI  209 (401)
T 2ggo_A          187 AINLM-AKD------------------------------------------------------HRVKVI--EYEGYWMDI  209 (401)
T ss_dssp             HHHHH-HHH------------------------------------------------------SCEEEE--ECCSCEEEC
T ss_pred             HHHHH-HCC------------------------------------------------------CcEEEE--EecceEEcC
Confidence            66655 332                                                      122333  334589999


Q ss_pred             cCHHHHHHHhHhhhcccc------ccCCCcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-eeEECCCCEE
Q 012817          317 NSIQAFMDINRDVIGEAN------HLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRI  389 (456)
Q Consensus       317 ~~~~~y~~~~~~~l~~~~------~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig~~~~i  389 (456)
                      +++++|..+++.++.+..      .+.....+.++..+++++.|++++.|++++.||++|.|+++|.|. +++||++|.|
T Consensus       210 ~t~edl~~a~~~l~~~~~~~~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~i  289 (401)
T 2ggo_A          210 GKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKI  289 (401)
T ss_dssp             CSHHHHHHHHHHHHHHTCCCEECSEECSSCEEESCEEECTTCEECTTCEEESSEEECTTCEECSSCEECTTEEECSSCEE
T ss_pred             CCHHHHHHHHHHHHHhcccccccceeCCCCEEcCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCcEECCCCEE
Confidence            999999999887765322      111122223344444444444444444445555555555555554 3555555555


Q ss_pred             CCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEe
Q 012817          390 GSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVAL  429 (456)
Q Consensus       390 g~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i  429 (456)
                      |++|.|.+|+|++++.||+++.+++++||++|.||++++|
T Consensus       290 g~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i  329 (401)
T 2ggo_A          290 GASVEVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLI  329 (401)
T ss_dssp             EETCEEESEEECTTCEEEESCEEESCEECTTCEECTTCEE
T ss_pred             CCCCEEecCEEcCCcEECCCceEcceEECCCcEECCCcEE
Confidence            5555555555555555555555555555555555555544

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=100.00  E-value=1.2e-38  Score=325.92  Aligned_cols=329  Identities=19%  Similarity=0.243  Sum_probs=235.8

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~   82 (456)
                      -+|||||||.|+||+    ...||+|+|++|||||+|++++|.++++++++|++++.  .+.+.+++.+      .+.++
T Consensus        12 ~~~vIlAaG~g~R~~----~~~pK~l~~i~gkpli~~~l~~l~~~g~~~iivv~~~~--~~~i~~~~~~------~i~~v   79 (468)
T 1hm9_A           12 NFAIILAAGKGTRMK----SDLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHK--AELVEEVLAG------QTEFV   79 (468)
T ss_dssp             EEEEEECCCCCGGGC----CSSCGGGSEETTEEHHHHHHHHHHTTCCSEEEEEECTT--HHHHHHSSSS------SSEEE
T ss_pred             CcEEEEcCCCCccCC----CCCCcEeeEECCccHHHHHHHHHHhcCCCCEEEEECCC--HHHHHHHhCC------CcEEE
Confidence            479999999999994    46899999999999999999999999999999999865  2345554432      35666


Q ss_pred             EccCCcChHHHHHHHHhcCC--CCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCC
Q 012817           83 TVPEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK  158 (456)
Q Consensus        83 ~~~~~~gt~~al~~~~~~l~--~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~  158 (456)
                      ..+...|++++++.+++.+.  .+.+++++||.  +...+++++++.|++.++++++++.+..                 
T Consensus        80 ~~~~~~G~~~sl~~a~~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~~~-----------------  142 (468)
T 1hm9_A           80 TQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETD-----------------  142 (468)
T ss_dssp             ECSSCCCHHHHHHTTHHHHTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECS-----------------
T ss_pred             eCCccCChHHHHHHHHHHhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEeccC-----------------
Confidence            66667899999999988775  46799999996  6677899999999988888888776543                 


Q ss_pred             CCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCcc----ccccc
Q 012817          159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK----FQSLK  234 (456)
Q Consensus       159 ~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~----~~s~~  234 (456)
                      ++..|+++.+|+++++ ..+.+++.....              ...+.++++|+|+|+++.|.+++++...    ...+.
T Consensus       143 ~~~~~g~v~~d~~g~v-~~~~ek~~~~~~--------------~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~  207 (468)
T 1hm9_A          143 NPFGYGRIVRNDNAEV-LRIVEQKDATDF--------------EKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYI  207 (468)
T ss_dssp             CCTTSCEEEECTTCCE-EEEECTTTCCTT--------------GGGCCEEEEEEEEEEHHHHHHHHTTCCSCSTTCSCCT
T ss_pred             CCCceeEEEECCCCCE-EEEEECCCCChH--------------HhcCeEEEEEEEEEEHHHHHHHHHhhccccCCCeEEH
Confidence            1556888888877764 444432110000              0125678999999999976556543211    12234


Q ss_pred             cchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcchhh
Q 012817          235 QDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCV  314 (456)
Q Consensus       235 ~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~~  314 (456)
                      +|+++.+++.+.                                                      ++..|  ...++|.
T Consensus       208 ~d~~~~l~~~g~------------------------------------------------------~v~~~--~~~g~~~  231 (468)
T 1hm9_A          208 TDVIGIFRETGE------------------------------------------------------KVGAY--TLKDFDE  231 (468)
T ss_dssp             THHHHHHHHHTC------------------------------------------------------CEEEE--ECSSGGG
T ss_pred             HHHHHHHHHCCC------------------------------------------------------EEEEE--EcCChHH
Confidence            788888876442                                                      23344  3456887


Q ss_pred             c--ccCHHHHHHHhHhhhcc--------ccc-cCC-CcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeE
Q 012817          315 R--LNSIQAFMDINRDVIGE--------ANH-LSG-YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSV  382 (456)
Q Consensus       315 ~--i~~~~~y~~~~~~~l~~--------~~~-~~~-~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~  382 (456)
                      +  ++++++|..++..+..+        ... +.+ ..++++.+.|++++.|++++.|++++.||++|.|+++|.|+++.
T Consensus       232 ~i~i~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~  311 (468)
T 1hm9_A          232 SLGVNDRVALATAESVMRRRINHKHMVNGVSFVNPEATYIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDST  311 (468)
T ss_dssp             GCCCCSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGCEECTTCEECTTCEECSSCEEESSCEECTTCEECTTCEEESCE
T ss_pred             hhCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEECCCeeEECCCcEECCCCEECCCcEECCCCEECCCCEECCCCEEeccE
Confidence            7  45999998887544221        010 111 22445667777777777777777788888888888888888888


Q ss_pred             ECCCCEECCCcEEeCeEECCCCEECCCcEEc-CeEECCCCEECCCcEecCe
Q 012817          383 IGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDC  432 (456)
Q Consensus       383 Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~~~  432 (456)
                      ||++|.|+ ++.|.+++|+++|.||+++.|. +++|++++.||+++.+.++
T Consensus       312 ig~~~~i~-~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~  361 (468)
T 1hm9_A          312 IGAGAVIT-NSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGS  361 (468)
T ss_dssp             ECTTCEEC-SCEEESCEECTTCEECSSCEECSSCEECTTCEEEEEEEEESC
T ss_pred             EeCCcEEE-EEEEeccccCCCcEECCceEEecCcEECCccEECCCcEEeee
Confidence            88888888 8888888888888888888886 7777777777666555433

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=100.00  E-value=7e-38  Score=319.57  Aligned_cols=199  Identities=18%  Similarity=0.265  Sum_probs=141.9

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |+|.|||||||.|+||.    ...||+|+|++|||||+|++++|.++++++++|++++.  .+.+.+++.+     .++.
T Consensus         7 ~~~~aiIlA~G~g~Rl~----~~~pK~l~~i~g~pli~~~l~~l~~~~~~~i~vv~~~~--~~~i~~~~~~-----~~~~   75 (459)
T 4fce_A            7 SSMSVVILAAGKGTRMY----SDLPKVLHPLAGKPMVQHVIDAAMKLGAQHVHLVYGHG--GELLKKTLAD-----PSLN   75 (459)
T ss_dssp             CCEEEEEEECCCCGGGC----CSSCGGGSEETTEEHHHHHHHHHHHHTCSCEEEEESSC--HHHHHHHC----------C
T ss_pred             CcceEEEECCCCCccCC----CCCCcccCeeCCeeHHHHHHHHHHhCCCCcEEEEeCCC--HHHHHHHhcc-----CCcE
Confidence            57899999999999995    35899999999999999999999999999999999865  2456655543     2355


Q ss_pred             EEEccCCcChHHHHHHHHhcCCC-CcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccC
Q 012817           81 VATVPEDVGTAGALRAIAHHLTA-KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT  157 (456)
Q Consensus        81 ~~~~~~~~gt~~al~~~~~~l~~-~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~  157 (456)
                      ++..+...|++++++.+++.+.+ +.+++++||.  +...+++++++.|.+  .+++++..+..  +             
T Consensus        76 ~v~~~~~~g~~~~i~~~~~~~~~~~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~~--~-------------  138 (459)
T 4fce_A           76 WVLQAEQLGTGHAMQQAAPHFADDEDILMLYGDVPLISVDTLQRLLAAKPE--GGIGLLTVKLD--N-------------  138 (459)
T ss_dssp             EEECSSCCCHHHHHHHHGGGSCTTSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEECS--C-------------
T ss_pred             EEeCCCCCCcHHHHHHHHHhcCCCCcEEEEeCCcccCCHHHHHHHHHHHhh--CCEEEEEEecC--C-------------
Confidence            66566678999999999998864 6799999995  677789999998875  44555555432  2             


Q ss_pred             CCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCc----ccccc
Q 012817          158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD----KFQSL  233 (456)
Q Consensus       158 ~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~----~~~s~  233 (456)
                        +..|+++..| +++ +..+.++++....              ...+.++++|+|+|+++.|..+++...    ....+
T Consensus       139 --~~~~g~v~~~-~g~-v~~~~ek~~~~~~--------------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~  200 (459)
T 4fce_A          139 --PSGYGRIVRE-NGD-VVGIVEHKDASDA--------------QREINEINTGILVANGRDLKRWLSLLDNNNAQGEFY  200 (459)
T ss_dssp             --CTTSCEEEEE-TTE-EEEEECGGGCCTT--------------GGGCCEEEEEEEEEEHHHHHHHHHTCCCCSTTCSCC
T ss_pred             --CCcccEEEeC-CCc-EEEEEECCCCChH--------------HhhccEEEEEEEEEEHHHHHHHHHHhCccccCCcEE
Confidence              5568888887 454 4555432211100              113567899999999998876665321    12223


Q ss_pred             ccchhHHHhHhc
Q 012817          234 KQDVLPYLVRSQ  245 (456)
Q Consensus       234 ~~d~l~~l~~~~  245 (456)
                      ..|+++.+.+.+
T Consensus       201 ~~d~~~~~~~~g  212 (459)
T 4fce_A          201 ITDIIALAHADG  212 (459)
T ss_dssp             TTHHHHHHHHTT
T ss_pred             HHHHHHHHHHCC
Confidence            467777776543

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=100.00  E-value=1.5e-37  Score=316.89  Aligned_cols=312  Identities=14%  Similarity=0.213  Sum_probs=197.8

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |++.|||||||.|+||.    ...||+|+|++|||||+|++++|.++++++++|++++..  +.+.+++.+.     ++.
T Consensus         4 ~~~~aiIlA~G~g~Rl~----~~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~~--~~i~~~~~~~-----~~~   72 (456)
T 2v0h_A            4 KALSAVILAAGKGTRMY----SDLPKVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGHGG--DLMRTHLANE-----QVN   72 (456)
T ss_dssp             CCEEEEEECCCCCGGGC----SSSCGGGSEETTEEHHHHHHHHHHHTTCSCEEEEECTTH--HHHHHHTTTC-----CCE
T ss_pred             CcceEEEECCCCCcccC----CCCCccccEECCccHHHHHHHHHHhCCCCcEEEEeCCCH--HHHHHHhhcC-----CcE
Confidence            46789999999999994    468999999999999999999999999999999998642  3555555332     356


Q ss_pred             EEEccCCcChHHHHHHHHhcCC-CCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccC
Q 012817           81 VATVPEDVGTAGALRAIAHHLT-AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT  157 (456)
Q Consensus        81 ~~~~~~~~gt~~al~~~~~~l~-~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~  157 (456)
                      ++..+...|++++++.+++.+. .+.+++++||.  +...+++++++.|.+  ++++++..+..  +             
T Consensus        73 ~v~~~~~~g~~~~~~~~~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~~--~-------------  135 (456)
T 2v0h_A           73 WVLQTEQLGTAHAVQQAAPFFKDNENIVVLYGDAPLITKETLEKLIEAKPE--NGIALLTVNLD--N-------------  135 (456)
T ss_dssp             EEECSCCCCHHHHHHHHGGGCCTTSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEECS--S-------------
T ss_pred             EEeCCCCCCcHHHHHHHHHhcCCCCeEEEEcCCcceeCHHHHHHHHHHHhc--CCEEEEEeecC--C-------------
Confidence            6666667899999999998885 57799999995  667789999998876  56666655433  1             


Q ss_pred             CCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCcc----cccc
Q 012817          158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK----FQSL  233 (456)
Q Consensus       158 ~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~~----~~s~  233 (456)
                        +..|+.+..| +++ +..+.++.+.      ...        ...+.++++|+|+|+++.|.+.+++...    ....
T Consensus       136 --~~~~g~v~~~-~g~-v~~~~ek~~~------~~~--------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~  197 (456)
T 2v0h_A          136 --PTGYGRIIRE-NGN-VVAIVEQKDA------NAE--------QLNIKEVNTGVMVSDGASFKKWLARVGNNNAQGEYY  197 (456)
T ss_dssp             --CTTSCEEEEE-TTE-EEEEECTTTC------CHH--------HHTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCCCC
T ss_pred             --CCccceEEEc-CCc-EEEEEECCCC------Chh--------HhcCcEEEEEEEEEEHHHHHHHHHHhccccccccEE
Confidence              4557888777 554 4555432111      000        0024578999999999977666543211    1123


Q ss_pred             ccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcchh
Q 012817          234 KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYC  313 (456)
Q Consensus       234 ~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~  313 (456)
                      ..|+++.+.+.+.                                                      ++..|..+....|
T Consensus       198 ~~d~~~~~~~~g~------------------------------------------------------~v~~~~~~~~~~~  223 (456)
T 2v0h_A          198 LTDLIALANQDNC------------------------------------------------------QVVAVQATDVMEV  223 (456)
T ss_dssp             GGGHHHHHHHTTC------------------------------------------------------CEEEEECSCTGGG
T ss_pred             HHHHHHHHHHcCC------------------------------------------------------EEEEEEeCCcceE
Confidence            4677777665331                                                      2333422212234


Q ss_pred             hcccCHHHHHHHhHhhhcc--------ccc-cCC-CcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEE
Q 012817          314 VRLNSIQAFMDINRDVIGE--------ANH-LSG-YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVI  383 (456)
Q Consensus       314 ~~i~~~~~y~~~~~~~l~~--------~~~-~~~-~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~I  383 (456)
                      .+++++++|..+++.+..+        ... +++ ..++++...+++++.|++++.|++++.||++|.|+++|.|.+++|
T Consensus       224 ~~I~tpeDl~~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~i  303 (456)
T 2v0h_A          224 EGANNRLQLAALERYFQNKQASKLLLEGVMIYDPARFDLRGTLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVI  303 (456)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEEEEEEEECSSCEECSSEEEEEEEEECTTCEECTTCEEEEEEE
T ss_pred             EeCCCHHHHHHHHHHHHHHHHHHHHHcCCEEECCCccEEcCceEECCCCEEcCCcEEcCCcEECCCCEECCCCEEEeEEE
Confidence            5888999998887643221        111 111 122334445555555555555555555555555555555555555


Q ss_pred             CCCCEECCCcEEeCeEECCCCEECCCcEE
Q 012817          384 GRHCRIGSNVKVVNSVVMNHVTIGDGCSI  412 (456)
Q Consensus       384 g~~~~ig~~~~i~~s~i~~~~~ig~~~~i  412 (456)
                      |++|.|++++.|.+++|+++|.||+++.|
T Consensus       304 g~~~~I~~~~~i~~~~ig~~~~I~~~~~i  332 (456)
T 2v0h_A          304 GNDVEIKPYSVLEDSIVGEKAAIGPFSRL  332 (456)
T ss_dssp             CTTCEECSSCEEEEEEECTTCEECSSEEE
T ss_pred             eCCCEEcCCeEEccCcCCCCcEECCccEE
Confidence            55555555555544444444444443333

>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*

Probab=99.97  E-value=4.1e-30  Score=245.01  Aligned_cols=241  Identities=13%  Similarity=0.221  Sum_probs=178.5

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhc-c-----
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-V-----   74 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~-~-----   74 (456)
                      |.|+|||||||.|+||+|+ |..+||+|+|++|||||+|+++++.++|+++++|++++..  +.+.+++.+.+ +     
T Consensus         1 M~~~avIlAaG~gtRl~pl-t~~~pK~ll~i~gkpli~~~l~~l~~~gi~~i~vv~~~~~--~~i~~~~~~~~~l~~~l~   77 (281)
T 3juk_A            1 MIKKCLFPAAGYGTRFLPI-TKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRNK--RSLEDYFDTSYEIEHQIQ   77 (281)
T ss_dssp             CCCEEEEECCSCCGGGTTG-GGTSCGGGCBSSSSBHHHHHHHHHHHHTCCEEEEEECTTH--HHHHHHTSCCC-------
T ss_pred             CceEEEEECCcCCcccCcc-ccCCCcccceECCEEHHHHHHHHHHhCCCCEEEEEecCCH--HHHHHHHhcchhhhhhhh
Confidence            8899999999999999999 9999999999999999999999999999999999998553  45666654321 0     


Q ss_pred             ---------------CccceEEEEccCCcChHHHHHHHHhcCCCCcEEEEcCCcccCCC-----hhHHHHHHHhcCceEE
Q 012817           75 ---------------DRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVP-----PGAVTAAHRRHDAVVT  134 (456)
Q Consensus        75 ---------------~~~~i~~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~-----l~~~l~~~~~~~a~~t  134 (456)
                                     ....+.++.++...|++++++.+++.+.+++|+|++||.+++.+     +.++++.|.+.++ .+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l~~~~~lv~~~D~~~~~~~~~~~l~~l~~~~~~~~~-~~  156 (281)
T 3juk_A           78 GTNKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIGNEPFAVILADDLCISHDHPSVLKQMTSLYQKYQC-SI  156 (281)
T ss_dssp             -CCHHHHHHHHHHHHHHCEEEEEECSSCCCHHHHHHHTHHHHCSSCEEEECTTEEEECTTSCCHHHHHHHHHHHHCS-CE
T ss_pred             cccchhhhhhhhccccCccEEEEecCCCCCcHHHHHHHHHHcCCCCEEEEeCCeeccCccchHHHHHHHHHHHHcCC-CE
Confidence                           01234555566679999999999988877789999999888887     9999999988877 56


Q ss_pred             EEEeecccCCCccCCCCCCcccCCCCCcccEEEecC--CC-cEEEEeecccccccccccchHHHhhcceeEEecCCccce
Q 012817          135 AMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDP--TK-QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAH  211 (456)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~d~--~~-~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~g  211 (456)
                      +.+...+..+               +..|+++..|+  ++ ..+..+.+++..+                ...++++++|
T Consensus       157 v~~~~~~~~~---------------~~~~g~v~~~~~~~g~~~v~~~~Ekp~~~----------------~~~~~~~~~G  205 (281)
T 3juk_A          157 VAIEEVALEE---------------VSKYGVIRGEWLEEGVYEIKDMVEKPNQE----------------DAPSNLAVIG  205 (281)
T ss_dssp             EEEEECCTTT---------------GGGSEEEEEEEEETTEEEEEEEEESCCTT----------------TCSCSEEEEE
T ss_pred             EEEEEechhh---------------cccCCEEEeccCCCCceEEeEEEECcCCC----------------CCCcceeEEE
Confidence            6665554222               56799999886  55 1355555322100                1135678999


Q ss_pred             EEeechHHHHHHHhcCc--cccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCC
Q 012817          212 MYAFNRSVLQEVLDQKD--KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALG  289 (456)
Q Consensus       212 iYi~~~~vl~~~~~~~~--~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (456)
                      +|+|++++|..+.....  ...-...|+++.+++.+                                            
T Consensus       206 iYi~~~~~l~~l~~~~~~~~~e~~l~d~i~~l~~~~--------------------------------------------  241 (281)
T 3juk_A          206 RYILTPDIFEILSETKPGKNNEIQITDALRTQAKRK--------------------------------------------  241 (281)
T ss_dssp             EEEECTTHHHHHHTCCCCGGGSCCHHHHHHHHHHHS--------------------------------------------
T ss_pred             EEEECHHHHHHHHhcCCCCCCceeHHHHHHHHHhcC--------------------------------------------
Confidence            99999999965432111  01111268888877542                                            


Q ss_pred             CCCCCCCCcceeeEEEEecCcchhhcccCHHHHHHHhHhhhccc
Q 012817          290 PNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEA  333 (456)
Q Consensus       290 ~~~~~~~~~~~~~~~yi~~~~~~~~~i~~~~~y~~~~~~~l~~~  333 (456)
                                 ++.+|  ...++|.+++++++|+++++.++...
T Consensus       242 -----------~v~~~--~~~g~~~dIgt~~d~~~a~~~l~~~~  272 (281)
T 3juk_A          242 -----------RIIAY--QFKGKRYDCGSVEGYIEASNAYYKKR  272 (281)
T ss_dssp             -----------CCEEE--ECCSEEEETTSHHHHHHHHHHHHHHH
T ss_pred             -----------CEEEE--EeCCeEEcCCCHHHHHHHHHHHHhch
Confidence                       22344  34679999999999999999887643

>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*

Probab=99.96  E-value=1e-27  Score=226.78  Aligned_cols=234  Identities=15%  Similarity=0.240  Sum_probs=174.4

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~   81 (456)
                      +|+|||||||.|+||+|+ |...||+|+|++|+|||+|+++++.++|+++++|++++... ..+.+++.+.......+.+
T Consensus        24 ~m~aiIlAaG~g~Rl~~l-t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~iivv~~~~~~-~~~~~~~~~~~~~~~~i~~  101 (269)
T 4ecm_A           24 AMKGIILAGGTGSRLYPI-TKVTNKHLLPVGRYPMIYHAVYKLKQCDITDIMIITGKEHM-GDVVSFLGSGQEFGVSFTY  101 (269)
T ss_dssp             CEEEEEECCSCCGGGTTT-TSSSCGGGSEETTEEHHHHHHHHHHHTTCCEEEEEECTTTH-HHHHHHHTTSGGGTCEEEE
T ss_pred             CcEEEEECCCCccccccc-cCCCCceecEECCEEHHHHHHHHHHHCCCCEEEEECChhhH-HHHHHHHhhccccCceEEE
Confidence            489999999999999999 89999999999999999999999999999999999985321 2445555432111223555


Q ss_pred             EEccCCcChHHHHHHHHhcCCCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCC
Q 012817           82 ATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPG  161 (456)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (456)
                      ..++...|++++++.+.+.+.++++++++||.++..++.++++.|.+.++++++++.+.+.                 +.
T Consensus       102 ~~~~~~~G~~~al~~a~~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-----------------~~  164 (269)
T 4ecm_A          102 RVQDKAGGIAQALGLCEDFVGNDRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQSVDD-----------------PE  164 (269)
T ss_dssp             EECSSCCCHHHHHHTTHHHHTTSEEEEEETTEEESSCSHHHHHHHHTSSSSEEEEEEECSC-----------------GG
T ss_pred             eeCCccCcHHHHHHHHHHhcCCCcEEEEeCCccCccCHHHHHHHHHhcCCCeEEEEEECCC-----------------CC
Confidence            5556678999999999888766789999999888899999999999988898888876541                 55


Q ss_pred             cccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCc---cccccccchh
Q 012817          162 RYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD---KFQSLKQDVL  238 (456)
Q Consensus       162 ~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~---~~~s~~~d~l  238 (456)
                      .|+++..|+ ++ +..+.+     |+.             ...+.++++|+|+|++++|..+ .+..   ...-...|++
T Consensus       165 ~~g~v~~d~-g~-v~~~~e-----kp~-------------~~~~~~~~~Giy~~~~~~l~~l-~~~~~~~~ge~~l~d~l  223 (269)
T 4ecm_A          165 RFGVANIQN-RK-IIEIEE-----KPK-------------EPKSSYAVTGIYLYDSKVFSYI-KELKPSARGELEITDIN  223 (269)
T ss_dssp             GSEEEEEET-TE-EEEEEE-----SCS-------------SCSCSEEEEEEEEECTTHHHHH-TSCCBCTTSCBCHHHHH
T ss_pred             CceEEEEcC-CE-EEEEEE-----CCC-------------CCCCcEEEEEEEEECHHHHHhh-hhcCCCCCCeeeHHHHH
Confidence            789988884 54 455543     210             1135678999999999998644 3221   1111235777


Q ss_pred             HHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcceeeEEEEecCcchhhcccC
Q 012817          239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNS  318 (456)
Q Consensus       239 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~~~i~~  318 (456)
                      +.+.+.+                                                       ++.+|  ...++|.++++
T Consensus       224 ~~l~~~g-------------------------------------------------------~v~~~--~~~~~~~dIgt  246 (269)
T 4ecm_A          224 NWYLKRG-------------------------------------------------------VLTYN--EMSGWWTDAGT  246 (269)
T ss_dssp             HHHHHTT-------------------------------------------------------CEEEE--ECCSCEEECSS
T ss_pred             HHHHHcC-------------------------------------------------------CEEEE--EeCCEEEeCCC
Confidence            7766432                                                       12233  35679999999


Q ss_pred             HHHHHHHhHhhhcc
Q 012817          319 IQAFMDINRDVIGE  332 (456)
Q Consensus       319 ~~~y~~~~~~~l~~  332 (456)
                      +++|..+++.++..
T Consensus       247 ~~dl~~a~~~l~~~  260 (269)
T 4ecm_A          247 HVSLQRANALARDI  260 (269)
T ss_dssp             HHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988654

>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*

Probab=99.95  E-value=7.1e-27  Score=219.83  Aligned_cols=228  Identities=18%  Similarity=0.323  Sum_probs=160.1

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhcc--Cccc
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV--DRLH   78 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~--~~~~   78 (456)
                      |+|+|||||||.|+||+|+ |...||+|+|++|||||+|+++++.++|+++++|++++..  +.+.+++.+...  ..+.
T Consensus         1 m~~~avIlAaG~gtRl~~l-t~~~pK~l~~i~gkpli~~~l~~l~~~g~~~i~vv~~~~~--~~i~~~~~~~~~~~~~~~   77 (259)
T 1tzf_A            1 MASKAVILAGGLGTRLSEE-TIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKG--YVIKEYFANYFLHMSDVT   77 (259)
T ss_dssp             CCCEEEEEECSCC---------CCCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTH--HHHHHHHHTHHHHHSCEE
T ss_pred             CCcEEEEECCCCcccCCCc-cCCCCccccEECCEEHHHHHHHHHHHCCCCEEEEEcccCH--HHHHHHHhhccccccccc
Confidence            8899999999999999999 8999999999999999999999999999999999997553  355555543210  0111


Q ss_pred             -------------------eEEEEccCCcChHHHHHHHHhcC-CCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEe
Q 012817           79 -------------------VEVATVPEDVGTAGALRAIAHHL-TAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMIC  138 (456)
Q Consensus        79 -------------------i~~~~~~~~~gt~~al~~~~~~l-~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~  138 (456)
                                         +.+..+....|++++++.+.+.+ .++++++++||.+++.++.++++.|.+.++.+++...
T Consensus        78 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~t~~~~  157 (259)
T 1tzf_A           78 FHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTAT  157 (259)
T ss_dssp             EEGGGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTTTSSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEEEE
T ss_pred             ccccccceeeeeccccccceeeeecccccCcHHHHHHHHHhcCCCCcEEEEECCEecccCHHHHHHHHHHhCCeEEEEEe
Confidence                               11222334689999999998888 3567999999998899999999999888887766432


Q ss_pred             ecccCCCccCCCCCCcccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechH
Q 012817          139 SVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRS  218 (456)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~  218 (456)
                      .                   .+..|+++.+| +++ +..+.+     |+..              .+.++++|+|+|+++
T Consensus       158 ~-------------------~~~~~g~v~~~-~g~-v~~~~e-----kp~~--------------~~~~~~~Giy~~~~~  197 (259)
T 1tzf_A          158 F-------------------PPGRFGALDIQ-AGQ-VRSFQE-----KPKG--------------DGAMINGGFFVLNPS  197 (259)
T ss_dssp             C-------------------CCCCSEEEEEE-TTE-EEEEEE-----SCSC--------------CSCCEECCCEEECGG
T ss_pred             c-------------------CCCCccEEEEc-CCE-EEEEEe-----cCCC--------------CCceEEEEEEEeCHH
Confidence            2                   14568888888 554 455543     3210              145789999999999


Q ss_pred             HHHHHHhcCccccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCc
Q 012817          219 VLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRR  298 (456)
Q Consensus       219 vl~~~~~~~~~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (456)
                      +|..+ .+.  ..++..|+++.+++++                                                     
T Consensus       198 ~l~~l-~~~--~~~~~~~~i~~~~~~~-----------------------------------------------------  221 (259)
T 1tzf_A          198 VIDLI-DND--ATTWEQEPLMTLAQQG-----------------------------------------------------  221 (259)
T ss_dssp             GGGGC-CST--TCCTTTHHHHHHHHTT-----------------------------------------------------
T ss_pred             HHHhh-ccc--ccccHHHHHHHHHHcC-----------------------------------------------------
Confidence            88533 221  1245577887765432                                                     


Q ss_pred             ceeeEEEEecCcchhhcccCHHHHHHHhHhhhc
Q 012817          299 THKCCVYIASNSKYCVRLNSIQAFMDINRDVIG  331 (456)
Q Consensus       299 ~~~~~~yi~~~~~~~~~i~~~~~y~~~~~~~l~  331 (456)
                        ++..|  ...++|.+++++++|..+++.+..
T Consensus       222 --~v~~~--~~~~~~~dI~t~~d~~~a~~~~~~  250 (259)
T 1tzf_A          222 --ELMAF--EHPGFWQPMDTLRDKVYLEGLWEK  250 (259)
T ss_dssp             --CEEEE--EECSCEEECCSHHHHHHHHHHHHT
T ss_pred             --CEEEE--EeCcEEEeCCCHHHHHHHHHHHhc
Confidence              12334  335699999999999999987754

>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}

Probab=99.95  E-value=6.1e-27  Score=224.74  Aligned_cols=187  Identities=18%  Similarity=0.220  Sum_probs=128.5

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhc--------
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY--------   73 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~--------   73 (456)
                      .|+|||||||.|+||+|+ |...||+|+|++|+|||+|+++++.++|+++++|++++.  .+.+.+++.+.+        
T Consensus        14 ~~~avIlAaG~gtRl~pl-t~~~pK~ll~i~gkpli~~~l~~l~~~g~~~i~vv~~~~--~~~i~~~~~~~~~l~~~l~~   90 (297)
T 2ux8_A           14 LRKAVFPVAGLGTRFLPA-TKAMPKEMLPVVDRPLIQYAVDEAVEAGIEQMIFVTGRG--KSALEDHFDIAYELEATMAA   90 (297)
T ss_dssp             CCEEEEEECCCCGGGTTT-TSSSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTT--CHHHHHHTSCCHHHHHHHHT
T ss_pred             ccEEEEECCCCccccCcc-ccCCCceeeeECCeEHHHHHHHHHHhCCCCEEEEEeCCC--HHHHHHHHhhhhhhhhhhhh
Confidence            589999999999999999 899999999999999999999999999999999999854  235555543210        


Q ss_pred             ------------cCccceEEEEccCCcChHHHHHHHHhcCCCCcEEEEcCCcccC---CChhHHHHHHHhcCceEEEEEe
Q 012817           74 ------------VDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD---VPPGAVTAAHRRHDAVVTAMIC  138 (456)
Q Consensus        74 ------------~~~~~i~~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~---~~l~~~l~~~~~~~a~~t~~~~  138 (456)
                                  .....+.++.++...|++++++.+.+.+.++++++++||.+++   .++.++++.|++.++ .++.+.
T Consensus        91 ~~~~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~~~~~~~lv~~~D~~~~~~~~~l~~l~~~~~~~~~-~~i~~~  169 (297)
T 2ux8_A           91 RGKSLDVLDGTRLKPGNIAYVRQQEPMGLGHAVWCARDIVGDEPFAVLLPDDFMFGQPGCLKQMVDAYNKVGG-NLICAE  169 (297)
T ss_dssp             TTCCGGGGTTSCCSTTSEEEEECCSCCCHHHHHHTTHHHHCSSCEEEECTTEEEESSSCHHHHHHHHHHHHCS-EEEEEC
T ss_pred             ccchhhhhhhcccCCCceEEEeCCCCCChHHHHHHHHHHcCCCcEEEEeCCeecCCChHHHHHHHHHHHhcCC-CEEEEE
Confidence                        0123466666666789999999998887667899999997665   679999999988766 455554


Q ss_pred             ecccCCCccCCCCCCcccCCCCCcccEEEecC--CC-cEEEEeecccccccccccchHHHhhcceeEEecCCccceEEee
Q 012817          139 SVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDP--TK-QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAF  215 (456)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~d~--~~-~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~  215 (456)
                      +.+..               ++..|+++..|+  ++ ..+..+.+     |+..           -...+.++++|+|+|
T Consensus       170 ~~~~~---------------~~~~yg~v~~~~~~~~~~~v~~~~e-----kp~~-----------~~~~~~~~~~Giyi~  218 (297)
T 2ux8_A          170 EVPDD---------------QTHRYGIITPGTQDGVLTEVKGLVE-----KPAP-----------GTAPSNLSVIGRYIL  218 (297)
T ss_dssp             --------------------------CCCCCCBCSSEEEC------------------------------CCCEEEEEEE
T ss_pred             ecCcc---------------cCCCCCeEEecccCCCceeEEEEEE-----CCCC-----------CCCCccEEEEEEEEE
Confidence            43211               145688776653  33 12333332     2100           022457899999999


Q ss_pred             chHHHHHH
Q 012817          216 NRSVLQEV  223 (456)
Q Consensus       216 ~~~vl~~~  223 (456)
                      ++++|..+
T Consensus       219 ~~~~l~~l  226 (297)
T 2ux8_A          219 QPEVMRIL  226 (297)
T ss_dssp             CTHHHHHH
T ss_pred             CHHHHHHH
Confidence            99988654

>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}

Probab=99.94  E-value=3.8e-26  Score=219.46  Aligned_cols=252  Identities=15%  Similarity=0.117  Sum_probs=173.2

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCccccccc--CCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccc
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPV--ANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLH   78 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi--~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~   78 (456)
                      |+|.+||||||.|+||+|      ||+|+|+  +|+|||+|+++++.++|+++++|++++.. .+.+.+++.+......+
T Consensus         4 m~~~~vIlAaG~g~R~~~------~K~l~~ig~~g~pli~~~l~~~~~~~~~~i~vv~~~~~-~~~~~~~~~~~~~~~~~   76 (303)
T 3pnn_A            4 MKPTLFVLAAGMGSRYGS------LKQLDGIGPGGDTIMDYSVYDAIRAGFGRLVFVIRHSF-EKEFREKILTKYEGRIP   76 (303)
T ss_dssp             CCCEEEEECTTCBCTTSS------BCCCCCCSTTSCCHHHHHHHHHHHHTCCEEEEEECGGG-HHHHHHHTHHHHTTTSC
T ss_pred             CceEEEEECCCCcccCCC------CceEeEcCCCCeeHHHHHHHHHHHCCCCeEEEEcCchH-HHHHHHHHHHHhccCCc
Confidence            678999999999999964      6999999  59999999999999999999999998552 24666666554333345


Q ss_pred             eEEEEcc---------------CCcChHHHHHHHHhcCCCCcEEEEcCCcccCCC-hhHHHHHHHh---cCceEEEEEee
Q 012817           79 VEVATVP---------------EDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVP-PGAVTAAHRR---HDAVVTAMICS  139 (456)
Q Consensus        79 i~~~~~~---------------~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~-l~~~l~~~~~---~~a~~t~~~~~  139 (456)
                      +.++.++               .+.||+++++.+.+.+ +++|+|++||.+++.+ +.+++++|.+   .++++++++.+
T Consensus        77 i~~~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~i-~~~~lV~~gD~l~~~~~~~~l~~~~~~~~~~~~~~~v~~~~  155 (303)
T 3pnn_A           77 VELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAI-REPFAVINADDFYGRNGFEVLARKLMTLEGKQGEYCMVGYR  155 (303)
T ss_dssp             EEEEECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTTC-CSCEEEEESSCBCCHHHHHHHHHHHHTTTTCSSEEEEEEEE
T ss_pred             EEEEecccccccccccccccccccCCcHHHHHHHHHhc-CCCEEEEECCeecCHHHHHHHHHHHHHhccccCceEEEEEE
Confidence            6777665               5689999999999988 5789999999888775 9999999986   56888888877


Q ss_pred             cccCCC-ccCCCCCCcccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcc--eeEEecCCccceEEeec
Q 012817          140 VPVSGL-SEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVG--QMDIRADLMDAHMYAFN  216 (456)
Q Consensus       140 ~~~~~~-~~~~~~~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~--~~~~~~~~~~~giYi~~  216 (456)
                      ..  +| +..+          ...+|++.+|++++ +..+.|+++....-.- .......+  .....++++++|+|+|+
T Consensus       156 ~~--~~~~~~g----------~~~~G~v~~d~~g~-v~~i~Ekp~~~~~~~~-~~~~~~~g~~~~~~~~~~i~~GiY~f~  221 (303)
T 3pnn_A          156 VG--NTLSESG----------GVSRGVCQVDEKHL-LTGVVERTGIERTDGT-ISFRDETGKICTLAEDAPVSMNMWGFT  221 (303)
T ss_dssp             GG--GSCBTTB----------CEEEEEEEECTTSB-EEEEEEEEEEEEETTE-EEEECTTSCEEEECTTCEEEEEEEEEC
T ss_pred             CC--CccCccC----------ceeeeeEeeCCCCc-EEEEEECCCCcccccc-ccccccccccccCCCCCEEEEEEEEEC
Confidence            64  22 1100          12246888988776 5566543321100000 00000000  00014678999999999


Q ss_pred             hHHHHHHHh----------cCccccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccc
Q 012817          217 RSVLQEVLD----------QKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELY  286 (456)
Q Consensus       217 ~~vl~~~~~----------~~~~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (456)
                      +++|..+..          .+...+.+.+|+++.+++++.                                        
T Consensus       222 ~~~~~~l~~~~~~~l~~~~~~~~~e~~l~d~i~~li~~g~----------------------------------------  261 (303)
T 3pnn_A          222 PDYFDYSEELFINFLNAHGQEPKSEFFIPFVVNDLIRSGR----------------------------------------  261 (303)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHTS----------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcCCcEEhHHHHHHHHHcCC----------------------------------------
Confidence            999876532          111112234677777765431                                        


Q ss_pred             cCCCCCCCCCCcceeeEEEEecCcchhhcccCHHHHHHHhHhh
Q 012817          287 ALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV  329 (456)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~yi~~~~~~~~~i~~~~~y~~~~~~~  329 (456)
                                   .++.+|  +..++|.+++++++|.+++..+
T Consensus       262 -------------~~v~~~--~~~g~w~dIgt~~dl~~a~~~l  289 (303)
T 3pnn_A          262 -------------ASVEVL--DTTARWFGVTYSDDRPGVVAKL  289 (303)
T ss_dssp             -------------CEEEEE--ECSCCCBCCSSGGGHHHHHHHH
T ss_pred             -------------CcEEEE--EeCCceECCCCHHHHHHHHHHH
Confidence                         134455  4568999999999999888765

>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}

Probab=99.94  E-value=4.4e-26  Score=219.35  Aligned_cols=236  Identities=12%  Similarity=0.212  Sum_probs=167.2

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhc--------
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY--------   73 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~--------   73 (456)
                      .|++||||||.|+||+|+ |...||+|+|++|+|||+|+++++.++|+++++|++++.  .+.+.+++.+.+        
T Consensus         8 ~~~avIlAaG~gtRl~pl-t~~~pK~ll~i~gkpli~~~l~~l~~~gi~~i~vv~~~~--~~~i~~~~~~~~~l~~~l~~   84 (302)
T 2e3d_A            8 VKKAVIPVAGLGTRMLPA-TKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSS--KNSIENHFDTSFELEAMLEK   84 (302)
T ss_dssp             CCEEEEECCSCCGGGTTT-TSSSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECGG--GHHHHHHHSCCHHHHHHHC-
T ss_pred             ccEEEEECCcCcccCCcc-ccCCCceeeEECCeEHHHHHHHHHHHCCCCEEEEEeCCC--HHHHHHHHhcchhhhhhhhh
Confidence            379999999999999999 999999999999999999999999999999999999864  235555553211        


Q ss_pred             --------------cCccceEEEEccCCcChHHHHHHHHhcCCCCcEEEEcCCcccC-----C---ChhHHHHHHHhcCc
Q 012817           74 --------------VDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD-----V---PPGAVTAAHRRHDA  131 (456)
Q Consensus        74 --------------~~~~~i~~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i~~-----~---~l~~~l~~~~~~~a  131 (456)
                                    .....+.++.++...|++++++.+.+.+.++++++++||++++     .   ++.++++.|++.++
T Consensus        85 ~~~~~~l~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~~~~~~~lv~~~D~~~~~~~~~~~~~~l~~l~~~~~~~~~  164 (302)
T 2e3d_A           85 RVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGH  164 (302)
T ss_dssp             ---CHHHHHHHHTSCTTCEEEEEECSSCCCHHHHHHHTHHHHCSSCEEEECTTEEECTTSSCTTTSTHHHHHHHHHHHCC
T ss_pred             ccchhhhhhhhhccccCcceEEeeCCccCCHHHHHHHHHHHcCCCcEEEEcCCccccCccccchHHHHHHHHHHHHhcCC
Confidence                          0122345555666799999999998887667899999997665     3   79999999988776


Q ss_pred             eEEEEEeecccCCCccCCCCCCcccCCCCCcccEEEec----CCCc--EEEEeecccccccccccchHHHhhcceeEEec
Q 012817          132 VVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMD----PTKQ--FLLHIATGAELEKDTRIRKSILRAVGQMDIRA  205 (456)
Q Consensus       132 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~d----~~~~--~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~  205 (456)
                       +++++.+..                 .+..|+++..+    +++.  .+..+.+++..+                ...+
T Consensus       165 -~~i~~~~~~-----------------~~~~yg~v~~~~~~~~~g~~~~v~~~~ekp~~~----------------~~~~  210 (302)
T 2e3d_A          165 -SQIMVEPVA-----------------DVTAYGVVDCKGVELAPGESVPMVGVVEKPKAD----------------VAPS  210 (302)
T ss_dssp             -EEEEEEECS-----------------CGGGSEEEECTTCCCCTTCEEEECEEEESCCTT----------------TCSC
T ss_pred             -cEEEEEEcc-----------------CCCCccEEEecccccCCCCceeEEEEEECCCCC----------------cccc
Confidence             666655432                 14578988764    3441  344444321100                1135


Q ss_pred             CCccceEEeechHHHHHHHhcCcc---ccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcc
Q 012817          206 DLMDAHMYAFNRSVLQEVLDQKDK---FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSF  282 (456)
Q Consensus       206 ~~~~~giYi~~~~vl~~~~~~~~~---~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (456)
                      .++++|+|+|++++|..+ .+...   ..-...|+++.+++.+                                     
T Consensus       211 ~~~~~Giyi~~~~~l~~l-~~~~~~~~~~~~l~d~i~~l~~~~-------------------------------------  252 (302)
T 2e3d_A          211 NLAIVGRYVLSADIWPLL-AKTPPGAGDEIQLTDAIDMLIEKE-------------------------------------  252 (302)
T ss_dssp             SEEEEEEEEECTTHHHHH-TCCCC----CCCHHHHHHHHHHHS-------------------------------------
T ss_pred             ceEEEEEEEECHHHHHHH-HhhCCCCCCceehHHHHHHHHHhC-------------------------------------
Confidence            678999999999988644 33110   0112256666665432                                     


Q ss_pred             cccccCCCCCCCCCCcceeeEEEEecCcchhhcccCHHHHHHHhHhhhcc
Q 012817          283 HELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGE  332 (456)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~~~~i~~~~~y~~~~~~~l~~  332 (456)
                                        ++.+|  ...++|.+++++++|+++++.++.+
T Consensus       253 ------------------~v~~~--~~~~~~~DIgt~~d~~~a~~~~~~~  282 (302)
T 2e3d_A          253 ------------------TVEAY--HMKGKSHDCGNKLGYMQAFVEYGIR  282 (302)
T ss_dssp             ------------------CEEEE--ECCSCEEECSSHHHHHHHHHHHHHH
T ss_pred             ------------------CEEEE--EeCCeEEcCCCHHHHHHHHHHHHhc
Confidence                              22344  4457999999999999999776543

>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.94  E-value=2.6e-26  Score=222.72  Aligned_cols=240  Identities=16%  Similarity=0.194  Sum_probs=168.2

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhc--------
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY--------   73 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~--------   73 (456)
                      .|++||||||.|+||+|+ |...||+|+|++|+|||+|+++++.++|+++++|++++..  +.+.+++.+.+        
T Consensus        12 ~~~aVIlAaG~gtRl~pl-t~~~pK~ll~i~gkpli~~~l~~l~~~gi~~iivv~~~~~--~~i~~~~~~~~~~~~~l~~   88 (323)
T 2pa4_A           12 VKTVVVPAAGLGTRFLPA-TKTVPKELLPVVDTPGIELIAAEAAELGATRLAIITAPNK--AGVLAHFERSSELEETLME   88 (323)
T ss_dssp             CCEEEEECCCCCGGGTTG-GGTSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTC--HHHHHTTSCCHHHHHHHHH
T ss_pred             ceEEEEECCCCccccCcc-ccCCCceeeeECCEEHHHHHHHHHHhCCCCEEEEEecCcH--HHHHHHHhccchhhhhhhc
Confidence            489999999999999999 9999999999999999999999999999999999998642  34554443210        


Q ss_pred             -------------cCccceEEEEccCCcChHHHHHHHHhcCCCCc--EEEEcCCcccC--CChhHHHHHHHhcCceEEEE
Q 012817           74 -------------VDRLHVEVATVPEDVGTAGALRAIAHHLTAKD--VLVVSGDLVSD--VPPGAVTAAHRRHDAVVTAM  136 (456)
Q Consensus        74 -------------~~~~~i~~~~~~~~~gt~~al~~~~~~l~~~~--~lv~~~D~i~~--~~l~~~l~~~~~~~a~~t~~  136 (456)
                                   .....+.++.++...|++++++.+.+.+.+++  |++++||.+++  .++..+++.|.+.++ .++.
T Consensus        89 ~~~~~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~l~~~~d~~lv~~~D~~~~~~~~l~~l~~~~~~~~~-~~i~  167 (323)
T 2pa4_A           89 RGKTDQVEIIRRAADLIKAVPVTQDKPLGLGHAVGLAESVLDDDEDVVAVMLPDDLVLPTGVMERMAQVRAEFGG-SVLC  167 (323)
T ss_dssp             TTCHHHHHHTTHHHHHCEEEEEECSSCCCHHHHHHTTGGGSCSSCCEEEEECTTEEEESSCHHHHHHHHHHTTCS-EEEE
T ss_pred             cchhhhhhhhhccccCcceEEEeCCccCCcHHHHHHHHHHhcCCCCeEEEEeCCcccCchHHHHHHHHHHHhcCC-cEEE
Confidence                         00123555656667899999999988886555  99999997665  679999999988766 4555


Q ss_pred             EeecccCCCccCCCCCCcccCCCCCcccEEEec----CCC-cEEEEeecccccccccccchHHHhhcceeEEecCCccce
Q 012817          137 ICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMD----PTK-QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAH  211 (456)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~d----~~~-~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~g  211 (456)
                      +...+..+               +..|+++.+|    +++ ..+..+.+++..+                ...+.++++|
T Consensus       168 ~~~~~~~~---------------~~~yg~v~~d~~~~~~~~~~V~~~~Ekp~~~----------------~~~~~~~~~G  216 (323)
T 2pa4_A          168 AVEVSEAD---------------VSKYGIFEIEADTKDSDVKKVKGMVEKPAIE----------------DAPSRLAATG  216 (323)
T ss_dssp             EEECCGGG---------------GGGSEEEEEEECCSSTTEEEEEEEEESCCTT----------------TCSCSEEEEE
T ss_pred             EEEecccc---------------cCCccEEEeCCcccCCCceeEEEEEECCCCc----------------cccccEEEEE
Confidence            54443111               4578888876    443 2455555322100                1134678899


Q ss_pred             EEeechHHHHHHHhcCccc-ccc-ccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCC
Q 012817          212 MYAFNRSVLQEVLDQKDKF-QSL-KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALG  289 (456)
Q Consensus       212 iYi~~~~vl~~~~~~~~~~-~s~-~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (456)
                      +|+|++++|..+.....+. ..+ ..|+++.+++.+                                            
T Consensus       217 iY~~~~~~~~~l~~~~~~~~ge~~l~d~i~~l~~~g--------------------------------------------  252 (323)
T 2pa4_A          217 RYLLDRKIFDALRRITPGAGGELQLTDAIDLLIDEG--------------------------------------------  252 (323)
T ss_dssp             EEEEETHHHHHHHHCCCCGGGCCCHHHHHHHHHHTT--------------------------------------------
T ss_pred             EEEECHHHHHHHHhhCCCCCCeEeHHHHHHHHHHcC--------------------------------------------
Confidence            9999999887553321110 111 257777775532                                            


Q ss_pred             CCCCCCCCcceeeEEEEecCcchhhcccCHHHHHHHhHhhhcc
Q 012817          290 PNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGE  332 (456)
Q Consensus       290 ~~~~~~~~~~~~~~~yi~~~~~~~~~i~~~~~y~~~~~~~l~~  332 (456)
                                .++.+|  ...++|.+++++++|..+++.++..
T Consensus       253 ----------~~v~~~--~~~g~w~DIgt~~dl~~a~~~~~~~  283 (323)
T 2pa4_A          253 ----------HPVHIV--IHQGKRHDLGNPGGYIPACVDFGLS  283 (323)
T ss_dssp             ----------CCEEEE--ECCSEEEECSSHHHHHHHHHHHHHT
T ss_pred             ----------CCEEEE--EeCCeEEeCCCHHHHHHHHHHHhhc
Confidence                      123444  3457999999999999999876543

>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...

Probab=99.94  E-value=1.8e-25  Score=213.59  Aligned_cols=185  Identities=20%  Similarity=0.332  Sum_probs=140.6

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |+|++||||||.|+||+|+ |...||+|+|++|||||+|+++.+..+|+++|+|++...+ .+.+.+++.+.......+.
T Consensus         1 M~~~aIILAgG~gtRl~pl-T~~~pK~llpi~gkpli~~~l~~l~~~gi~~I~vv~~~~~-~~~i~~~l~~g~~~g~~i~   78 (293)
T 1fxo_A            1 MKRKGIILAGGSGTRLHPA-TLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQD-TPRFQQLLGDGSNWGLDLQ   78 (293)
T ss_dssp             -CEEEEEECCCCCTTTTTH-HHHSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTT-HHHHHHHHTTSGGGTCEEE
T ss_pred             CCceEEEECCCCCCcCccc-cCCCCceeCeECCEeHHHHHHHHHHHCCCCEEEEEecccc-HHHHHHHHhcccccCceEE
Confidence            8899999999999999999 8899999999999999999999999999999998885332 2356666654211123355


Q ss_pred             EEEccCCcChHHHHHHHHhcCCCCcEEEEcCCc-ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCC
Q 012817           81 VATVPEDVGTAGALRAIAHHLTAKDVLVVSGDL-VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK  159 (456)
Q Consensus        81 ~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~-i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~  159 (456)
                      +..++.+.|++++++.+.+.+.+++++++.||. +.+.++.++++.|.+.+..++++..++.  +               
T Consensus        79 ~~~~~~~~G~~~al~~a~~~i~~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~--d---------------  141 (293)
T 1fxo_A           79 YAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVL--D---------------  141 (293)
T ss_dssp             EEECSSCCCGGGHHHHTHHHHTTSEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEECS--C---------------
T ss_pred             EeeCCCCCCHHHHHHHHHHHhCCCCEEEEECChhccCccHHHHHHHHHhcCCCcEEEEEECC--C---------------
Confidence            565666789999999998887667788888995 4467899999999877677777665543  2               


Q ss_pred             CCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHH
Q 012817          160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV  223 (456)
Q Consensus       160 ~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~  223 (456)
                      |..|+++.+|++++++ .+.+     |+.             ...++++++|+|+|++++|..+
T Consensus       142 p~~~g~v~~d~~g~v~-~~~e-----kp~-------------~~~s~~~~~Giy~~~~~~l~~~  186 (293)
T 1fxo_A          142 PERYGVVEFDQGGKAI-SLEE-----KPL-------------EPKSNYAVTGLYFYDQQVVDIA  186 (293)
T ss_dssp             GGGSEEEEECTTSCEE-EEEE-----SCS-------------SCSSSEEEEEEEEECTTHHHHH
T ss_pred             cccCcEEEECCCCcEE-EEEE-----CCC-------------CCCCCeEEEEEEEEcHHHHHHH
Confidence            5578999999877643 4432     210             1135678999999999998755

>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}

Probab=99.94  E-value=1.6e-25  Score=209.58  Aligned_cols=195  Identities=13%  Similarity=0.154  Sum_probs=138.5

Q ss_pred             EEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHH-CCCCEEEEEecCchh-hHHHHhhhhhhccCccceEEE
Q 012817            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLEL-SNIKDLIVVVEGADA-ALRVGGWISAAYVDRLHVEVA   82 (456)
Q Consensus         5 aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~-~gi~~v~iv~~~~~~-~~~i~~~~~~~~~~~~~i~~~   82 (456)
                      +||||||.|+||+|+ |...||||+|++|||||+|+|+++.+ +|+++++|++++... .+.+++.+.+...... ..+.
T Consensus         2 ~iIlAaG~GtRl~pl-t~~~PK~llpv~gkpli~~~l~~l~~~~gi~~iivv~~~~~~~~~~~~~~~~~~~~~~~-~~~~   79 (255)
T 4evw_A            2 IVIPMAGMSSRFFKA-GYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYDTAVFVREKATQLGIKQF-YIAE   79 (255)
T ss_dssp             EEEECCSCCHHHHHT-TCCSCGGGCEETTEEHHHHHHGGGGGGTTTSCEEEEEESSTTHHHHHHHHHHHHTCSSE-EEEE
T ss_pred             EEEEcCCCCcccccC-CCCCCccccEECCeEHHHHHHHHHhccCCCceEEEEECchhhhHHHHHHHHHHcCCCCc-eEEE
Confidence            799999999999999 89999999999999999999999999 799999999986531 1233333332211111 2344


Q ss_pred             EccCCcChHHHHHHHHhcC------CCCcEEEEcCCccc-CCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcc
Q 012817           83 TVPEDVGTAGALRAIAHHL------TAKDVLVVSGDLVS-DVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKD  155 (456)
Q Consensus        83 ~~~~~~gt~~al~~~~~~l------~~~~~lv~~~D~i~-~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~  155 (456)
                      .++...||+++++.+.+.+      .+++++|++||.++ +.++.++     ..+++.+++++..+  +           
T Consensus        80 ~~~~~~Gt~~av~~a~~~l~~~~~~~~~~~lV~~gD~l~~~~~~~~~-----~~~~~~~i~~~~~~--~-----------  141 (255)
T 4evw_A           80 LHTETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPNFVFPDI-----SQHSDGYLEVFQGG--G-----------  141 (255)
T ss_dssp             ESSCCSSHHHHHHHHHHHHHHTTCCCCSCEEECCTTEECTTCCCCGG-----GGSSSEEEEEEECC--S-----------
T ss_pred             eCCCCCCHHHHHHHHHHHHhhcccCCCCcEEEEeCCEEEecchhHHH-----hhcCCcEEEEEecC--C-----------
Confidence            4666799999999998877      35679999999777 5566653     24566778777653  1           


Q ss_pred             cCCCCCcccEEEecCCC--cEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechH-HHHH----HHhcCc
Q 012817          156 KTKKPGRYNIIGMDPTK--QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRS-VLQE----VLDQKD  228 (456)
Q Consensus       156 ~~~~~~~~~iv~~d~~~--~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~-vl~~----~~~~~~  228 (456)
                          + .||++..|+++  + +..+.|     |+.               .++++++|+|+|++. .|..    ++.+..
T Consensus       142 ----p-~yG~v~~d~~g~~~-V~~i~E-----K~~---------------~s~~~~~GiY~f~~~~~~~~~l~~~i~~~~  195 (255)
T 4evw_A          142 ----D-NWSFAKPEHAGSTK-VIQTAE-----KNP---------------ISDLCSTGLYHFNRKEDYLEAYREYVARPS  195 (255)
T ss_dssp             ----S-CSCEEEESSTTCCB-EEEEES-----SSC---------------SSSEEEEEEEEESCHHHHHHHHHHHHTSCG
T ss_pred             ----C-ceeEEEECCCCCeE-EEEEEe-----ccC---------------ccCcEEEeEEEECcHHHHHHHHHHHHhccc
Confidence                3 79999999876  5 555553     311               357899999999985 3322    222211


Q ss_pred             ----cccccccchhHHHhHhc
Q 012817          229 ----KFQSLKQDVLPYLVRSQ  245 (456)
Q Consensus       229 ----~~~s~~~d~l~~l~~~~  245 (456)
                          ..+.+.+|+++.+++++
T Consensus       196 ~~~~~gE~~ltd~i~~li~~g  216 (255)
T 4evw_A          196 QEWERGELYIAPLYNELIQKG  216 (255)
T ss_dssp             GGCSCSCCCSTTHHHHHHHTT
T ss_pred             ccccCCeEehHHHHHHHHHCC
Confidence                22334678999887654

>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6

Probab=99.93  E-value=1.1e-24  Score=208.10  Aligned_cols=184  Identities=20%  Similarity=0.325  Sum_probs=140.0

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~   81 (456)
                      +|++||||||.|+||+|+ |...||+|+|++|||||+|+++.+..+|+++|+|+++... .+.+++++.+.......+.+
T Consensus         3 ~m~aIILAgG~GtRl~pl-T~~~pK~llpi~gkpli~~~l~~l~~~gi~~Iivv~~~~~-~~~i~~~l~~g~~~g~~i~~   80 (295)
T 1lvw_A            3 HMKGIVLAGGSGTRLYPI-TRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRD-LPLYRDLLGDGSQFGVRFSY   80 (295)
T ss_dssp             SCEEEEECCCCCSTTTTT-TTSSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTT-HHHHHHHHTTSGGGTSEEEE
T ss_pred             ceEEEEECCCCCCccccc-cCCCCceecEECCeeHHHHHHHHHHHCCCCeEEEEeccch-HHHHHHHhhhccccCceEEE
Confidence            589999999999999999 8999999999999999999999999999999999886332 34566666542111233556


Q ss_pred             EEccCCcChHHHHHHHHhcCCCCcEEEEcCCcc-cCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCC
Q 012817           82 ATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLV-SDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKP  160 (456)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~i-~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (456)
                      ..++.+.|++++++.+.+.+.+++++++.||.+ .+.++.++++.|.+.+..++++..++.  +               |
T Consensus        81 ~~~~~~~G~~~al~~a~~~i~~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~--d---------------p  143 (295)
T 1lvw_A           81 RVQEEPRGIADAFIVGKDFIGDSKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVR--D---------------P  143 (295)
T ss_dssp             EECSSCCCGGGHHHHTHHHHTTSCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEECS--C---------------C
T ss_pred             eeCCCCCChHHHHHHHHHHhCCCcEEEEECCccccCcCHHHHHHHHHHcCCCcEEEEEECC--C---------------c
Confidence            656667899999999988876677888889954 467899999999876667777665543  2               5


Q ss_pred             CcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHH
Q 012817          161 GRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV  223 (456)
Q Consensus       161 ~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~  223 (456)
                      ..|+++.+|+++++ ..+.+     |+.             ...++++++|+|+|+++++..+
T Consensus       144 ~~~g~v~~d~~g~v-~~~~e-----kp~-------------~~~s~~~~~Giy~f~~~~l~~~  187 (295)
T 1lvw_A          144 RPFGVVEFDSEGRV-ISIEE-----KPS-------------RPKSNYVVPGLYFYDNQVVEIA  187 (295)
T ss_dssp             TTSEEEEECTTSBE-EEEEE-----SCS-------------SCSCSEECCSEEEECTTHHHHH
T ss_pred             ccCCEEEECCCCcE-EEEEE-----CCC-------------CCCCCEEEEEeEEEcHHHHHHH
Confidence            57999999987764 34432     210             1135678999999999998755

>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6

Probab=99.93  E-value=8.5e-25  Score=208.90  Aligned_cols=184  Identities=20%  Similarity=0.318  Sum_probs=139.1

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~   81 (456)
                      .|++||||||.|+||+|+ |...||+|+|++|||||+|+++.+..+|+++|+|+++... .+.+++++.+.......+.+
T Consensus         3 ~m~aIILAgG~GtRl~pl-T~~~pK~llpi~gkpli~~~l~~l~~~gi~~I~vv~~~~~-~~~i~~~l~~g~~~g~~i~~   80 (296)
T 1mc3_A            3 HMKGIILAGGSGTRLHPI-TRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPED-KGYFQRLLGDGSEFGIQLEY   80 (296)
T ss_dssp             CCEEEEECCCCCGGGHHH-HTTSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTT-HHHHHHHHTTSGGGTCEEEE
T ss_pred             ccEEEEECCCCCCcCCcc-cCCCCceeeEECCeeHHHHHHHHHHhCCCCcEEEEechhH-HHHHHHHHhcccccCceEEE
Confidence            478999999999999999 8999999999999999999999999999999999886332 34566666542111233555


Q ss_pred             EEccCCcChHHHHHHHHhcCCCCcEEEEcCCc-ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCC
Q 012817           82 ATVPEDVGTAGALRAIAHHLTAKDVLVVSGDL-VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKP  160 (456)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~-i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (456)
                      ..++.+.|++++++.+.+.+.+++++++.||. +.+.++.++++.|.+.+..++++..++.  +               |
T Consensus        81 ~~~~~~~G~~~al~~a~~~i~~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~--d---------------p  143 (296)
T 1mc3_A           81 AEQPSPDGLAQAFIIGETFLNGEPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVM--D---------------P  143 (296)
T ss_dssp             EECSSCCCSTHHHHHTHHHHTTSCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECS--C---------------C
T ss_pred             eccCCCCCHHHHHHHHHHHhCCCCEEEEECCccccccCHHHHHHHHHHcCCCCEEEEEECC--C---------------c
Confidence            65666789999999998887667787778994 4467899999999776667777665543  2               5


Q ss_pred             CcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHH
Q 012817          161 GRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV  223 (456)
Q Consensus       161 ~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~  223 (456)
                      ..|+++.+|++++ +..+.+     |+.             ...++++++|+|+|+++++..+
T Consensus       144 ~~yg~v~~d~~g~-v~~~~e-----kp~-------------~~~s~~~~~Giy~~~~~~l~~~  187 (296)
T 1mc3_A          144 ERFGVVEFDDNFR-AISLEE-----KPK-------------QPKSNWAVTGLYFYDSKVVEYA  187 (296)
T ss_dssp             SSSBBCEEETTEE-EEECCB-----SCS-------------SCSCSEEEEEEEECCTHHHHHH
T ss_pred             ccCCEEEECCCCc-EEEEEE-----CCC-------------CCCCCEEEEEEEEEcHHHHHHH
Confidence            6789998887765 444432     211             1135678999999999998654

>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}

Probab=99.93  E-value=8.5e-25  Score=210.69  Aligned_cols=191  Identities=15%  Similarity=0.194  Sum_probs=126.6

Q ss_pred             CCceEEEEecCCCCCCcCCCCC-CCccccccc-CCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCcc-
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSK-EVPKALLPV-ANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRL-   77 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~-~~pK~llpi-~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~-   77 (456)
                      |+|++||||||.|+||+|+ +. ..||+|+|+ +|+|||+|+++++.++ +++++|++++.. .+.+.+++.+.+  .. 
T Consensus         3 ~~~~avIlAgG~gtRl~pl-t~~~~pK~ll~i~gg~pli~~~l~~l~~~-~~~i~vv~~~~~-~~~i~~~~~~~~--~~~   77 (308)
T 2qh5_A            3 LKIKNILLSGGSGKRLWPL-SRSLYPKQFLKLFDHKSLFELSFKRNASL-VDETLIVCNEKH-YFLALEEIKNEI--KNK   77 (308)
T ss_dssp             CCEEEEEECC--------------CCGGGCTTBTTBCHHHHHHHHHHTT-CSEEEEEEEGGG-HHHHHHHTTTTC--SSC
T ss_pred             CccEEEEEcCCCCccCCcc-CCCCCCCEEEECCCCCCHHHHHHHHHHcc-CCCEEEEEChhH-HHHHHHHHHHhh--CCC
Confidence            4689999999999999999 64 799999999 5999999999999999 999999998542 235555554411  12 


Q ss_pred             ceEEEEccCCcChHHHHHHHHhcCCCCc-EEEEcCCccc-CCC-hhHHHHH---HHhcCceEEEEEeecccCCCccCCCC
Q 012817           78 HVEVATVPEDVGTAGALRAIAHHLTAKD-VLVVSGDLVS-DVP-PGAVTAA---HRRHDAVVTAMICSVPVSGLSEAGSS  151 (456)
Q Consensus        78 ~i~~~~~~~~~gt~~al~~~~~~l~~~~-~lv~~~D~i~-~~~-l~~~l~~---~~~~~a~~t~~~~~~~~~~~~~~~~~  151 (456)
                      .+.++.++...||+++++.+...+..++ +++++||.++ +.+ +.++++.   |.+.++++|+.+.+..          
T Consensus        78 ~~~~i~~~~~~gt~~al~~a~~~l~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~----------  147 (308)
T 2qh5_A           78 SVGFLLESLSKNTANAIALSALMSDKEDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLVTFGVSIDK----------  147 (308)
T ss_dssp             EEEEEEESSCCCHHHHHHHHHHTSCTTSEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCEEEEEEECSS----------
T ss_pred             ccEEEeCCCCCChHHHHHHHHHHhCCCCeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCEEEEEEecCC----------
Confidence            3456666777999999999988885454 9999999876 555 8999987   6667777887766532          


Q ss_pred             CCcccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHH
Q 012817          152 GAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL  224 (456)
Q Consensus       152 ~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~  224 (456)
                             .+..|+++..|+++++ ..+.+++.    ....+..+..      .+.++++|+|+|++++|.+.+
T Consensus       148 -------~~~~~g~i~~d~~~~V-~~~~Ekp~----~~~~~~~~~~------g~~~~n~Giy~~~~~~ll~~l  202 (308)
T 2qh5_A          148 -------PNTEFGYIESPNGLDV-KRFIEKPS----LDKAIEFQKS------GGFYFNSGMFVFQAGVFLDEL  202 (308)
T ss_dssp             -------CCTTSEEEECSSSSBC-SEEEESCC----HHHHHHHHHH------CCEEEEEEEEEEEHHHHHHHH
T ss_pred             -------CCCCceEEEECCCCEE-EEEEECCC----hHHHHHHhhc------CCeEEEeEEEEEEHHHHHHHH
Confidence                   1456899988765554 34443221    1111111111      135789999999999874444

>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*

Probab=99.90  E-value=1.9e-23  Score=202.99  Aligned_cols=190  Identities=19%  Similarity=0.229  Sum_probs=131.2

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCC-cchHHHHHHHHHHC-CCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVAN-RPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~g-kpli~~~l~~l~~~-gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |.+||||||.|+||+|+|+...||+|+|++| +|||+|+++++..+ |+++++|++++.. .+.+.+++.+.  ..  ..
T Consensus         2 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~g~~pli~~~l~~l~~~~~~~~iivvt~~~~-~~~i~~~l~~~--~~--~~   76 (336)
T 2x65_A            2 MKALILAGGSGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDY-VERTKKELPEL--PD--EN   76 (336)
T ss_dssp             CEEEEECCCBCGGGTTTSCTTCBGGGCCCBTTBCHHHHHHHHHHTTCCGGGEEEEEEGGG-HHHHHHHCTTS--CG--GG
T ss_pred             eEEEEECCCCCccCCCCcCCCCCceEEECCCCCcHHHHHHHHHhccCCCCcEEEEcChHH-HHHHHHHhhcc--cc--ce
Confidence            7899999999999999955889999999999 99999999999986 8999999998542 23455555432  11  23


Q ss_pred             EEEccCCcChHHHHHHHHhcCC-CCcEEEEcCCcccCC--ChhH----HHHHHHhcCceEEEEEeecccCCCccCCCCCC
Q 012817           81 VATVPEDVGTAGALRAIAHHLT-AKDVLVVSGDLVSDV--PPGA----VTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA  153 (456)
Q Consensus        81 ~~~~~~~~gt~~al~~~~~~l~-~~~~lv~~~D~i~~~--~l~~----~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~  153 (456)
                      ++.++..+||++++..+...+. ++.+++++||+++..  ++..    +++.|.+.++.+|+.+.+...           
T Consensus        77 ii~e~~~~gta~ai~~a~~~~~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~~vt~~i~p~~~-----------  145 (336)
T 2x65_A           77 IIAEPMKKNTAPACFIGTKLADDDEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGLFTFGIVPTRP-----------  145 (336)
T ss_dssp             EEEESSCCCHHHHHHHHHTTSCTTCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHHCSEEEEEECCCSC-----------
T ss_pred             EEeCCCCCCcHHHHHHHHHhhCCCCEEEEEcCCceeccHHHHHHHHHHHHHHHHhcCCeEEEEeecccC-----------
Confidence            4556777999999998877664 345999999977654  4444    444566656777766544321           


Q ss_pred             cccCCCCCcccEEEecCC----CcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHH
Q 012817          154 KDKTKKPGRYNIIGMDPT----KQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL  224 (456)
Q Consensus       154 ~~~~~~~~~~~iv~~d~~----~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~  224 (456)
                            ++.||++..+++    ...+..+.|+++.    ...+..+..      ...++|+|+|+|++++|.+.+
T Consensus       146 ------~~~yG~I~~~~~~~~~~~~V~~f~EKp~~----~~a~~~~~~------g~y~~n~Giy~~~~~~ll~~l  204 (336)
T 2x65_A          146 ------ETGYGYIEIGEELEEGVHKVAQFREKPDL----ETAKKFVES------GRFLWNSGMFLWKAREFIEEV  204 (336)
T ss_dssp             ------CSSSEEEEEEEEEETTEEEEEEEEESCCH----HHHHHHHHH------TCEEEEEEEEEEEHHHHHHHH
T ss_pred             ------CCCceEEEECCccCCCccEEEEEEECCCh----HHHHHHHhc------CCeEEEeeeEEEEHHHHHHHH
Confidence                  356899987653    1235555543221    111112211      124789999999999874343

>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13

Probab=99.89  E-value=1.6e-22  Score=189.04  Aligned_cols=191  Identities=20%  Similarity=0.247  Sum_probs=133.4

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |++.|||||||.|+||    .   ||+|+|++|||||+|+++.+.++|+++++|+++.    +.+.+++.++     ++.
T Consensus         1 M~~~aiIlA~G~stRl----p---~K~L~~i~GkPli~~~l~~l~~~~~~~ivVv~~~----~~i~~~~~~~-----g~~   64 (252)
T 3oam_A            1 MSFTVVIPARYQSTRL----P---GKPLADIGGKPMIQWVYEQAMQAGADRVIIATDD----ERVEQAVQAF-----GGV   64 (252)
T ss_dssp             CCEEEEEECCCCCSSS----T---TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEESC----HHHHHHHHHT-----TCE
T ss_pred             CceEEEEecCcCCCCC----C---CcceeeECCEEHHHHHHHHHHhCCCCeEEEECCH----HHHHHHHHHc-----CCE
Confidence            8899999999999999    2   7999999999999999999999999999999863    3566655442     234


Q ss_pred             EEE--ccCCcChHHHHHHHHhcC---CCCcEEEEcCC--cccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCC
Q 012817           81 VAT--VPEDVGTAGALRAIAHHL---TAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA  153 (456)
Q Consensus        81 ~~~--~~~~~gt~~al~~~~~~l---~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~  153 (456)
                      +++  ++.+.||++ +..+.+.+   ..+.++++.||  ++...+++.+++.|.+.++++++++.+..  +|.+.     
T Consensus        65 v~~~~~~~~~Gt~~-~~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~v~--~~~~~-----  136 (252)
T 3oam_A           65 VCMTSPNHQSGTER-LAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEIE--DEAEV-----  136 (252)
T ss_dssp             EEECCTTCCSHHHH-HHHHHHHTTCCTTSEEEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEEEC--CHHHH-----
T ss_pred             EEEcCCCCCCcHHH-HHHHHHhcCcCCCCEEEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeeecC--CHHHh-----
Confidence            443  345578887 55565665   34679999999  46677899999999988888888887664  22110     


Q ss_pred             cccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhc
Q 012817          154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ  226 (456)
Q Consensus       154 ~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~  226 (456)
                          .+| ..+.+.+|++++++.+...+...+++      ...........+.++++|+|+|++++|..+...
T Consensus       137 ----~~p-~~g~vv~d~~g~v~~fsr~~i~~~~~------~~~~~~~~~~~~~~~n~GiY~~~~~~l~~~~~~  198 (252)
T 3oam_A          137 ----FNP-NAVKVITDKSGYALYFSRATIPWDRD------NFAKADKAIVQPLLRHIGIYAYRAGFINTYLDW  198 (252)
T ss_dssp             ----TCT-TSCEEEECTTSBEEEEESSCSSCCHH------HHHSSSCCCCSCEEEEEEEEEEETTHHHHHHHS
T ss_pred             ----hCC-CceEEEECCCCeEEEEeCCCCCCCCC------ccccccccccccceEEEEEEEcCHHHHHHHHcC
Confidence                011 23788899888866554321111111      000000000135678999999999999887643

>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20

Probab=99.88  E-value=1.2e-22  Score=197.41  Aligned_cols=186  Identities=20%  Similarity=0.246  Sum_probs=127.5

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCC-cchHHHHHHHHHHC-CCCEEEEEecCchhhHHHHhhhhhhccCccc
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVAN-RPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLH   78 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~g-kpli~~~l~~l~~~-gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~   78 (456)
                      |+|.+||||||.|+||||+|....||+|+|++| +|||+|+++++..+ ++++++|++++.. .+.+.+++.+     ..
T Consensus         1 M~m~~VILAgG~GtRl~Pls~~~~pK~ll~l~G~~pli~~~l~~l~~~~~~~~iiVvt~~~~-~~~i~~~l~~-----~~   74 (337)
T 2cu2_A            1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQ-EAVARPYADG-----IR   74 (337)
T ss_dssp             CCEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGG-HHHHGGGCSS-----SE
T ss_pred             CCeEEEEEcCCCcccCCccCCCCCCceEEEcCCCChHHHHHHHHHhCcCCCCCEEEEcChHH-HHHHHHHhcc-----Cc
Confidence            889999999999999999943789999999999 99999999999988 8999999998542 2344444432     12


Q ss_pred             eEEEEccCCcChHHHHHHHHhcC----CCCcEEEEcCCcccCC--ChhHHHH----HHHhcCceEEEEEeecccCCCccC
Q 012817           79 VEVATVPEDVGTAGALRAIAHHL----TAKDVLVVSGDLVSDV--PPGAVTA----AHRRHDAVVTAMICSVPVSGLSEA  148 (456)
Q Consensus        79 i~~~~~~~~~gt~~al~~~~~~l----~~~~~lv~~~D~i~~~--~l~~~l~----~~~~~~a~~t~~~~~~~~~~~~~~  148 (456)
                      .  +.++..+||+.++..+.. +    .++.+++++||+++..  .|..+++    .|.+ ++.+|+.+.+..       
T Consensus        75 ~--i~e~~~~gta~ai~~a~~-l~~~~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~-~~~vt~~i~p~~-------  143 (337)
T 2cu2_A           75 L--LLEPLGRDTAGAVLLGVA-EALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEE-GFVVALGLRPTR-------  143 (337)
T ss_dssp             E--EEESSCCHHHHHHHHHHH-HHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCT-TCEEEEEECCSS-------
T ss_pred             e--EecCCCCCcHHHHHHHHH-HhccCCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHc-CCeEEEeeccCC-------
Confidence            2  345667899999887765 3    2467999999976643  4554444    3444 566776655432       


Q ss_pred             CCCCCcccCCCCCcccEEEecCC---CcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHH
Q 012817          149 GSSGAKDKTKKPGRYNIIGMDPT---KQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL  224 (456)
Q Consensus       149 ~~~~~~~~~~~~~~~~iv~~d~~---~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~  224 (456)
                                .++.||++..+++   ...+..+.|+++    ....+.++.       ...++|+|+|+|++++|.+.+
T Consensus       144 ----------~~t~yG~I~~~~~~~~~~~V~~f~EKp~----~~~a~~~~~-------~g~~~n~Giy~f~~~~ll~~l  201 (337)
T 2cu2_A          144 ----------PETEYGYIRLGPREGAWYRGEGFVEKPS----YAEALEYIR-------KGYVWNGGVFAFAPATMAELF  201 (337)
T ss_dssp             ----------CCSSSCEEEEEEEETTEEEEEEEECCCC----HHHHHHHHH-------TTCEEEEEEEEECHHHHHHHH
T ss_pred             ----------CCCCceEEEECCcccccCeEEEEEeCCC----hHHHHHHhh-------cCCEEEEEEEEEeHHHHHHHH
Confidence                      1457999988754   123555554222    111122221       115799999999999874443

>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*

Probab=99.88  E-value=3.5e-22  Score=187.01  Aligned_cols=166  Identities=16%  Similarity=0.237  Sum_probs=115.2

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |+|.+||||||.|+||+|+ |...||+|+|++|+|||+|+++++.++|+++++|++++..  +.+..+...     +++.
T Consensus        24 ~~~~aiIlAaG~gtRl~pl-t~~~pK~l~~i~gkpli~~~l~~l~~~g~~~i~vv~~~~~--~~i~~~~~~-----~~~~   95 (254)
T 1jyk_A           24 IRVKAIILAAGLGTRLRPL-TENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLK--EQFDYLKEK-----YGVR   95 (254)
T ss_dssp             CCCEEEEEECSCCGGGTTT-TSSSCGGGCEETTEEHHHHHHHHHHHTTCCCEEEEECTTG--GGGTHHHHH-----HCCE
T ss_pred             cCceEEEECCCCcccCCcc-cCCCCCEEeeECCEEHHHHHHHHHHHCCCCeEEEEeCCcH--HHHHHHHHh-----CCcE
Confidence            4688999999999999999 8999999999999999999999999999999999997542  234433322     2355


Q ss_pred             EEEccC--CcChHHHHHHHHhcCCCCcEEEEcCCcccCCC-hhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccC
Q 012817           81 VATVPE--DVGTAGALRAIAHHLTAKDVLVVSGDLVSDVP-PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT  157 (456)
Q Consensus        81 ~~~~~~--~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~  157 (456)
                      ++..++  ..|++++++.+.+.+.  ++++++||+++..+ +..++    +.++.+++   ...  ++            
T Consensus        96 iv~~~~~~~~g~~~al~~a~~~~~--~~lv~~~D~~~~~~~~~~~~----~~~~~~t~---~~~--~~------------  152 (254)
T 1jyk_A           96 LVFNDKYADYNNFYSLYLVKEELA--NSYVIDADNYLFKNMFRNDL----TRSTYFSV---YRE--DC------------  152 (254)
T ss_dssp             EEECTTTTTSCTHHHHHTTGGGCT--TEEEEETTEEESSCCCCSCC----CSEEEEEC---EES--SC------------
T ss_pred             EEECCCccCCCcHHHHHHHHHHCC--CEEEEeCCcccCHHHHHHHH----hCCceEEE---Ecc--cC------------
Confidence            665444  4689999999888873  58999999655433 33332    22333332   111  11            


Q ss_pred             CCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHH
Q 012817          158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQE  222 (456)
Q Consensus       158 ~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~  222 (456)
                        ...|+++ +|+++++ ..+.+     ++                .+.++++|+|+|+++.+..
T Consensus       153 --~~~~~v~-~d~~g~v-~~~~e-----~~----------------~~~~~~~Giy~~~~~~~~~  192 (254)
T 1jyk_A          153 --TNEWFLV-YGDDYKV-QDIIV-----DS----------------KAGRILSGVSFWDAPTAEK  192 (254)
T ss_dssp             --SSCCEEE-ECTTCBE-EEEEC-----CC----------------SSEEBCCSEEEECHHHHHH
T ss_pred             --CCCeEEE-ECCCCeE-EEEEE-----CC----------------CCCcEEEEEEEEcHHHHHH
Confidence              1246654 7777764 44432     21                1346899999999875543

>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*

Probab=99.85  E-value=3.5e-20  Score=173.57  Aligned_cols=190  Identities=17%  Similarity=0.228  Sum_probs=128.9

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |++.|||||||.|+||    .   +|+|+|++|||||+|+++++.++++++|+|+++.    +.+.+++...     ++.
T Consensus        17 M~~~aIIlA~G~stRl----p---~K~L~~i~GkPmi~~~l~~l~~~~i~~IvV~t~~----~~i~~~~~~~-----g~~   80 (264)
T 3k8d_A           17 MSFVVIIPARYASTRL----P---GKPLVDINGKPMIVHVLERARESGAERIIVATDH----EDVARAVEAA-----GGE   80 (264)
T ss_dssp             -CCEEEEECCSCCSSS----T---TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEESC----HHHHHHHHHT-----TCE
T ss_pred             CceEEEEEcCCCCCCC----C---CcceeeECCeEHHHHHHHHHHhCCCCEEEEECCH----HHHHHHHHHc-----CCE
Confidence            7789999999999999    2   5999999999999999999999999999999863    2455544432     244


Q ss_pred             EEE--ccCCcChHHHHHHHHhcC---CCCcEEEEcCC--cccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCC
Q 012817           81 VAT--VPEDVGTAGALRAIAHHL---TAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA  153 (456)
Q Consensus        81 ~~~--~~~~~gt~~al~~~~~~l---~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~  153 (456)
                      ++.  .+...|++. +..+.+.+   ..+.++++.||  ++....++.+++.+.+.++++++++.+...  +.+      
T Consensus        81 v~~~~~~~~~Gt~~-i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~~v~d--~~~------  151 (264)
T 3k8d_A           81 VCMTRADHQSGTER-LAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHN--AEE------  151 (264)
T ss_dssp             EEECCTTCCSHHHH-HHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEECCS--HHH------
T ss_pred             EEEecCCCCCCHHH-HHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEEEcCC--HHH------
Confidence            444  334567765 66666655   34679999999  466778999999999888888888876542  111      


Q ss_pred             cccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHh
Q 012817          154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (456)
Q Consensus       154 ~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~  225 (456)
                         ..+|+... +.+|++++++.+........+      ............+.+.+.|+|+|++++|..+..
T Consensus       152 ---~~~p~~vk-Vv~d~~g~~l~fsr~~ip~~r------~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~  213 (264)
T 3k8d_A          152 ---AFNPNAVK-VVLDAEGYALYFSRATIPWDR------DRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVN  213 (264)
T ss_dssp             ---HTCTTSCE-EEECTTSBEEEEESSCCSCCH------HHHHHCSSCCCSCCEEECSEEEEEHHHHHHHHH
T ss_pred             ---ccCCCceE-EEECCCCeEEEEecCCCCCCC------ccccccccccCCcceEEEEEEEECHHHHHHHHh
Confidence               01233333 457888886655532111111      110000000112467899999999999987754

>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0

Probab=99.84  E-value=9.6e-20  Score=169.77  Aligned_cols=191  Identities=18%  Similarity=0.233  Sum_probs=123.0

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |++.+||||||.|+||    .   ||+|+|++|||||+|+++.+.++|+++|+|+++.    +.+.+++...     ++.
T Consensus         8 M~~~aIIlA~G~stRl----~---~K~L~~i~GkPli~~~l~~l~~~~i~~VvVvt~~----~~i~~~~~~~-----g~~   71 (256)
T 3tqd_A            8 MEFRVIIPARFDSTRL----P---GKALVDIAGKPMIQHVYESAIKSGAEEVVIATDD----KRIRQVAEDF-----GAV   71 (256)
T ss_dssp             -CCEEEEECCCC---C----T---TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEESC----HHHHHHHHHT-----TCE
T ss_pred             CCceEEEEcCCCCCCC----C---CCCeeeECCchHHHHHHHHHHhCCCCEEEEECCH----HHHHHHHHHc-----CCe
Confidence            5678999999999999    2   8999999999999999999999999999999863    3455555432     234


Q ss_pred             EEE--ccCCcChHHHHHHHHhcC---CCCcEEEEcCCc--ccCCChhHHHHHHHhc-CceEEEEEeecccCCCccCCCCC
Q 012817           81 VAT--VPEDVGTAGALRAIAHHL---TAKDVLVVSGDL--VSDVPPGAVTAAHRRH-DAVVTAMICSVPVSGLSEAGSSG  152 (456)
Q Consensus        81 ~~~--~~~~~gt~~al~~~~~~l---~~~~~lv~~~D~--i~~~~l~~~l~~~~~~-~a~~t~~~~~~~~~~~~~~~~~~  152 (456)
                      ++.  .+...|++. +..+++.+   ..+.++++.||.  +....++.+++.+.+. +++++++..+...  +.+     
T Consensus        72 v~~~~~~~~~Gt~~-i~~a~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~~~v~~--~~~-----  143 (256)
T 3tqd_A           72 VCMTSSDHQSGTER-IAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLCTPITE--VDE-----  143 (256)
T ss_dssp             EEECCTTCCSHHHH-HHHHHHHTTCCTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEEEECCC--HHH-----
T ss_pred             EEEeCCCCCCcHHH-HHHHHHHhCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeeEcCC--HHH-----
Confidence            443  234467765 77777776   356799999994  5567899999999874 5566666655432  111     


Q ss_pred             CcccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHh
Q 012817          153 AKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (456)
Q Consensus       153 ~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~  225 (456)
                          ..+|+.+. +.+|++|+.+.+.....+..++..     ..........+.+...|+|.|++++|..+..
T Consensus       144 ----~~~p~~vk-vv~d~~g~~l~fsr~pip~~r~~~-----~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~  206 (256)
T 3tqd_A          144 ----LFNPHSTK-VVLNRRNYALYFSHAPIPWGRDTF-----SDKENLQLNGSHYRHVGIYAYRVGFLEEYLS  206 (256)
T ss_dssp             ----HTCTTSCE-EEECTTSBEEEEESSCSSCCTTTT-----TCGGGCCCSSCCEEEEEEEEEEHHHHHHHHH
T ss_pred             ----hhCCCccE-EEECCCCEEeEEecCCCCCCCccc-----ccccccccCCcceEEEEEEEcCHHHHHHHHh
Confidence                11244444 468888886655533221111100     0000000012467899999999999987753

>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}

Probab=99.79  E-value=8e-18  Score=155.34  Aligned_cols=177  Identities=19%  Similarity=0.217  Sum_probs=116.7

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |++.|||||||.|+||    .   ||+|+|++|+|||+|+++++.++ +++++|++++.    .+.+++.+.      +.
T Consensus         1 m~~~aiIlA~G~g~R~----~---~K~l~~i~g~pli~~~l~~~~~~-~~~i~v~~~~~----~i~~~~~~~------~~   62 (234)
T 2y6p_A            1 MRRAVIIPARLGSTRL----K---EKPLKNLLGKPLIRWVVEGLVKT-GERVILATDSE----RVKEVVEDL------CE   62 (234)
T ss_dssp             -CEEEEEECCSCCTTT----T---TGGGCEETTEEHHHHHHHHHHTT-TSCEEEEESCH----HHHHHHTTT------SE
T ss_pred             CceEEEEEcCCCCCCC----C---CCcceeECCEEHHHHHHHHHHHh-CCEEEEECChH----HHHHHHHhc------eE
Confidence            7889999999999999    3   99999999999999999999999 99999999752    444444321      33


Q ss_pred             EEEccC--CcChHHHHHHHHhcCCCCcEEEEcCCc-ccC-CChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCccc
Q 012817           81 VATVPE--DVGTAGALRAIAHHLTAKDVLVVSGDL-VSD-VPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK  156 (456)
Q Consensus        81 ~~~~~~--~~gt~~al~~~~~~l~~~~~lv~~~D~-i~~-~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~  156 (456)
                      ++..++  ..|+++++ .+++.+..+.+++++||. +.+ .+++++++.|.+.++.+++......  +.           
T Consensus        63 ~~~~~~~~~~g~~~~~-~~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~--~~-----------  128 (234)
T 2y6p_A           63 VFLTPSDLPSGSDRVL-YVVRDLDVDLIINYQGDEPFVYEEDIKLIFRELEKGERVVTLARKDKE--AY-----------  128 (234)
T ss_dssp             EEECCTTCCSHHHHHH-HHHTTCCCSEEEECCTTCCCCCHHHHHHHHHHHHHTCSEEEEEEECSG--GG-----------
T ss_pred             EEECCcccccchHHHH-HHHHhCCCCEEEEecCCcCcCCHHHHHHHHHHHHhCCCeEEEecCCHH--Hh-----------
Confidence            443322  46777765 566666667799999996 655 6899999999887654554433111  00           


Q ss_pred             CCCCCcccEEEecCCCcEEEEeeccccc-ccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHh
Q 012817          157 TKKPGRYNIIGMDPTKQFLLHIATGAEL-EKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (456)
Q Consensus       157 ~~~~~~~~iv~~d~~~~~l~~~~~~~~~-~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~  225 (456)
                       .++..+.+ ..|+++++ ..+.+++.. .++     .  .     . .+.+.++|+|+|+++.|..+..
T Consensus       129 -~~~~~~~~-~~~~~g~v-~~~~e~~~~~~~~-----~--~-----~-~~~~~~~giy~~~~~~l~~~~~  182 (234)
T 2y6p_A          129 -ERPEDVKV-VLDREGYA-LYFSRSPIPYFRK-----N--D-----T-FYPLKHVGIYGFRKETLMEFGA  182 (234)
T ss_dssp             -GCTTSCEE-EECTTSBE-EEEESSCCSCCSS-----C--C-----S-SCCEEEEEEEEEEHHHHHHHHH
T ss_pred             -cCCCceEE-EEcCCCCE-eeeecCCCCcccc-----c--c-----c-ceeeEEEEEEEcCHHHHHHHHh
Confidence             01333333 44666653 444332100 000     0  0     0 0245799999999999877653

>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A

Probab=99.78  E-value=2.5e-18  Score=160.07  Aligned_cols=187  Identities=20%  Similarity=0.254  Sum_probs=120.6

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHH-HHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVL-EQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l-~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~   81 (456)
                      +.|||||||.|+||       .+|+|+|++|||||+|++ +.+.++++++|+|++++.    .+.+++...     ++.+
T Consensus         2 ~~aiIlA~G~stR~-------~~K~L~~i~GkPli~~~i~~~~~~~~~~~vvVvt~~~----~i~~~~~~~-----g~~v   65 (253)
T 4fcu_A            2 KHIVIPARFSSSRL-------PGKPLLLIHDRPMILRVVDQAKKVEGFDDLCVATDDE----RIAEICRAE-----GVDV   65 (253)
T ss_dssp             EEEEEECCSCCTTS-------TTGGGSEETTEEHHHHHHHHHHTCTTCCEEEEEESCH----HHHHHHHTT-----TCCE
T ss_pred             eEEEEEeCCCCCCC-------CCCceeeECCeEhHHHHHHHHHHhcCCCEEEEECCHH----HHHHHHHHc-----CCeE
Confidence            46999999999999       259999999999999999 999988999999999743    455444332     2334


Q ss_pred             EE--ccCCcChHHHHHHHHhcCC---CCcEEEEcCC--cccCCChhHHHHHHHhc-CceEEEEEeecccCCCccCCCCCC
Q 012817           82 AT--VPEDVGTAGALRAIAHHLT---AKDVLVVSGD--LVSDVPPGAVTAAHRRH-DAVVTAMICSVPVSGLSEAGSSGA  153 (456)
Q Consensus        82 ~~--~~~~~gt~~al~~~~~~l~---~~~~lv~~~D--~i~~~~l~~~l~~~~~~-~a~~t~~~~~~~~~~~~~~~~~~~  153 (456)
                      +.  .+...|+ +++..+++.+.   .+.++++.||  ++....++.+++.+.+. ++.+..++.+...  ..+      
T Consensus        66 ~~~~~~~~~Gt-~~i~~a~~~~~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~~~~~--~~~------  136 (253)
T 4fcu_A           66 VLTSADHPSGT-DRLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHA--LDE------  136 (253)
T ss_dssp             EECCTTCCCHH-HHHHHHHHHHTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEEECCC--HHH------
T ss_pred             EEeCCCCCChH-HHHHHHHHhcCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeEEcCC--HHH------
Confidence            33  2334566 46777766653   3669999999  46667899999999876 3343333333211  000      


Q ss_pred             cccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHH
Q 012817          154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL  224 (456)
Q Consensus       154 ~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~  224 (456)
                         ..+|+.+. +..|++|+++.+........++..      ...........+.+.|+|+|++++|..+.
T Consensus       137 ---~~~p~~~k-vv~d~~g~~l~fsr~~ip~~r~~~------~~~~~~~~~~~~~~~GiY~f~~~~l~~~~  197 (253)
T 4fcu_A          137 ---FQRDSIVK-VVMSKQNEALYFSRATIPYDRDGA------KRDEPTLHTQAFRHLGLYAYRVSLLQEYV  197 (253)
T ss_dssp             ---HHCTTSCE-EEECTTSBEEEEESSCCSCCTTTS------SSSSCCCCSCCEEEEEEEEEEHHHHHHHT
T ss_pred             ---ccCCCccE-EEECCCCeEEEecCCCCCCCCCcc------cccccccccceeEEEEEEEeCHHHHHHHH
Confidence               11255544 567888887665543222122110      00000001244679999999999998775

>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*

Probab=99.77  E-value=2.1e-17  Score=153.64  Aligned_cols=123  Identities=18%  Similarity=0.214  Sum_probs=93.5

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCC-CEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNI-KDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi-~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i   79 (456)
                      |++.|||||||.|+||    .   ||+|+|++|+|||+|+++.+.++++ ++++|++++.    .+.+++.+.     ++
T Consensus         1 m~~~aiIlA~G~~~R~----~---~K~l~~i~g~pli~~~i~~~~~~~~~~~ivvv~~~~----~i~~~~~~~-----~~   64 (245)
T 1h7e_A            1 SKAVIVIPARYGSSRL----P---GKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDP----RVEQAVQAF-----GG   64 (245)
T ss_dssp             CCEEEEEECCSCCSSS----T---TGGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESCH----HHHHHHHHT-----TC
T ss_pred             CCeEEEEEcCCcCCCC----C---CCcccccCCchHHHHHHHHHHhCCCCCeEEEECCcH----HHHHHHHHc-----CC
Confidence            8899999999999999    3   9999999999999999999999996 9999999752    445444332     24


Q ss_pred             EEEEc--cCCcChHHHHHHHHhcCCCCcEEEEcCCc--ccCCChhHHHHHHHhc-CceEEEEEeec
Q 012817           80 EVATV--PEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRH-DAVVTAMICSV  140 (456)
Q Consensus        80 ~~~~~--~~~~gt~~al~~~~~~l~~~~~lv~~~D~--i~~~~l~~~l~~~~~~-~a~~t~~~~~~  140 (456)
                      .++..  +...|+++++ .+++.+..+.+++++||.  +...+++.+++.|.+. ++++++++.+.
T Consensus        65 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~  129 (245)
T 1h7e_A           65 KAIMTRNDHESGTDRLV-EVMHKVEADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAI  129 (245)
T ss_dssp             EEEECCSCCSSHHHHHH-HHHHHSCCSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEE
T ss_pred             eEEeCCCccCCcHHHHH-HHHHhCCCCEEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEeecC
Confidence            55543  2335665544 555555556799999994  5566799999999887 77776666554

>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*

Probab=99.76  E-value=2.5e-17  Score=154.72  Aligned_cols=189  Identities=16%  Similarity=0.202  Sum_probs=118.4

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |++.|||||||.|+||    .   +|+|+|++|||||+|+++.+.++++++++|++++.    .+.+++...     ++.
T Consensus         1 m~~~aiIlA~G~g~R~----~---~K~l~~~~gkpli~~~l~~l~~~~~~~ivvv~~~~----~i~~~~~~~-----~~~   64 (262)
T 1vic_A            1 MSFTVIIPARFASSRL----P---GKPLADIKGKPMIQHVFEKALQSGASRVIIATDNE----NVADVAKSF-----GAE   64 (262)
T ss_dssp             -CCEEEEECCCCCSSS----T---TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEESCH----HHHHHHHHT-----TCE
T ss_pred             CCcEEEEEcCCCCCCC----C---CCccccCCCeEHHHHHHHHHHhCCCceEEEECCcH----HHHHHHHhc-----CCE
Confidence            8899999999999999    2   49999999999999999999999999999998743    344444331     244


Q ss_pred             EEEcc--CCcChHHHHHHHHhcC---CCCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCC
Q 012817           81 VATVP--EDVGTAGALRAIAHHL---TAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA  153 (456)
Q Consensus        81 ~~~~~--~~~gt~~al~~~~~~l---~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~  153 (456)
                      ++..+  ...|++ .+..+.+.+   ..+.+++++||.  +...+++.+++.+.+.++++++++.+...  +.+.     
T Consensus        65 ~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~--~~~~-----  136 (262)
T 1vic_A           65 VCMTSVNHNSGTE-RLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHD--AEEL-----  136 (262)
T ss_dssp             EEECCCSSCCHHH-HHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCC--HHHH-----
T ss_pred             EEECCccccCChH-HHHHHHHHhccCCCCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEEecCC--HHHh-----
Confidence            54432  234555 344454444   345699999994  55678999999998877777776665432  1000     


Q ss_pred             cccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHH----hhcceeEEecCCccceEEeechHHHHHHH
Q 012817          154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSIL----RAVGQMDIRADLMDAHMYAFNRSVLQEVL  224 (456)
Q Consensus       154 ~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~----~~~~~~~~~~~~~~~giYi~~~~vl~~~~  224 (456)
                          . ...+..+..|++++++.+..      +.........    .+...-.+.....++|+|+|++++|..+.
T Consensus       137 ----~-~~~~~~~~~~~~g~v~~f~~------~~~~~~r~~~~~~~~~~~~~~p~~~~~~~giy~~~~~~l~~~~  200 (262)
T 1vic_A          137 ----F-NPNAVKVLTDKDGYVLYFSR------SVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYV  200 (262)
T ss_dssp             ----T-CTTSCEEEECTTSBEEEEES------SCSSCCHHHHTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHH
T ss_pred             ----c-CCCceEEEECCCCCEeeeec------CCCCcCCccccccccccccccccceEEEEEEEEeeHHHHHHHH
Confidence                0 11233344566666543332      1100000000    00000011235689999999999887654

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=99.74  E-value=1e-16  Score=158.19  Aligned_cols=75  Identities=12%  Similarity=0.084  Sum_probs=41.2

Q ss_pred             cEEEEcCCcccCC--ChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCCcccEEEecCCC-cEEEEeecc
Q 012817          105 DVLVVSGDLVSDV--PPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTK-QFLLHIATG  181 (456)
Q Consensus       105 ~~lv~~~D~i~~~--~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~d~~~-~~l~~~~~~  181 (456)
                      .-|+-.+|+++..  +|.+++++|.     +++..  .  ++               +..+++..+|+.+ ..+ .+.+ 
T Consensus        12 ~~~~~~~dhiy~m~~~l~~i~~~h~-----~tl~g--~--~~---------------~~~~Gv~~ld~a~~g~I-~F~e-   65 (374)
T 2iu8_A           12 SGLVPRGSHMSQSTYSLEQLADFLK-----VEFQG--N--GA---------------TLLSGVEEIEEAKTAHI-TFLD-   65 (374)
T ss_dssp             ---------CCSCCEEHHHHHHHTT-----CEEES--C--TT---------------CEECEECCTTTCCTTEE-EECC-
T ss_pred             cCcccCccccccCcCcHHHHHHhhC-----CEEEC--C--Cc---------------ceEEEEeccccCCCCeE-EEEe-
Confidence            3567789999987  8999999885     24432  1  11               4567888887533 234 4543 


Q ss_pred             cccccccccchHHHhhcceeEEecCCccceEEeechHHHH
Q 012817          182 AELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQ  221 (456)
Q Consensus       182 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~  221 (456)
                          |+...+            ...+.++|+|+|+++++.
T Consensus        66 ----kPk~~~------------~~~~~~aGiyI~~~~~l~   89 (374)
T 2iu8_A           66 ----NEKYAK------------HLKSSEAGAIIISRTQFQ   89 (374)
T ss_dssp             ----SSSTHH------------HHHTCCCSEEEEEHHHHH
T ss_pred             ----Cchhhh------------hhhcCCcEEEEeChhHhh
Confidence                221100            124679999999999774

>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0

Probab=99.72  E-value=1e-16  Score=149.13  Aligned_cols=127  Identities=14%  Similarity=0.159  Sum_probs=90.3

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      ++.+||||||.|+||.+   ...||+|+|++|||||+|+|+++.+++ +++++|++++... +.+.+.+..+... ..+.
T Consensus         3 ~~~aIIlAaG~g~Rm~~---~~~pK~l~~l~Gkpll~~~l~~~~~~~~~~~ivvv~~~~~~-~~~~~~~~~~~~~-~~~~   77 (246)
T 3f1c_A            3 LIYAQILAGGKGTRMGN---VSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWM-NHAEDNIKKYISD-DRIV   77 (246)
T ss_dssp             CEEEEEECC-----C-C---SSCCGGGSEETTEEHHHHHHHHHHTCTTCSEEEEEECGGGH-HHHHHHHHHHCCC-TTEE
T ss_pred             ccEEEEECCccccccCC---CCCCCeEEEECCeeHHHHHHHHHHcCCCCCEEEEEeCHHHH-HHHHHHHHHhCCC-CCEE
Confidence            46899999999999953   268999999999999999999999997 9999999985532 2344434333222 1233


Q ss_pred             EEEccCCcChHHHHHHHHhcCC-------CCcEEEEcCC--cccCCChhHHHHHHHhcCceEEE
Q 012817           81 VATVPEDVGTAGALRAIAHHLT-------AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA  135 (456)
Q Consensus        81 ~~~~~~~~gt~~al~~~~~~l~-------~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~  135 (456)
                      ++  ....+..++++.+++.+.       .+.++++.||  ++....++++++.+.+.++.+++
T Consensus        78 ~~--~~~~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a~i~~  139 (246)
T 3f1c_A           78 VI--EGGEDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAVDTV  139 (246)
T ss_dssp             EE--ECCSSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEEEEE
T ss_pred             EE--CCCCchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCCEEEE
Confidence            33  445677888888876653       3569999999  57777899999999988766554

>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A

Probab=99.70  E-value=1.1e-16  Score=147.11  Aligned_cols=124  Identities=15%  Similarity=0.134  Sum_probs=92.3

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i   79 (456)
                      |++.|||||||.|+||    .   ||+|+|++|+|||+|+++.+.+++ +++++|++++.    .+.+++...     .+
T Consensus         3 m~~~aiIlA~G~g~R~----~---~K~l~~i~gkpll~~~l~~~~~~~~~~~ivvv~~~~----~i~~~~~~~-----~~   66 (228)
T 1ezi_A            3 KQNIAVILARQNSKGL----P---LKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDGG----LIAEEAKNF-----GV   66 (228)
T ss_dssp             CEEEEEEECCSSCSSS----T---TTTTCEETTEEHHHHHHHHHHHHCCCSEEEEEESCH----HHHHHHHHT-----TC
T ss_pred             CceEEEEecCCCCCCC----C---CcccceeCCcCHHHHHHHHHHhCCCCCEEEEECCCH----HHHHHHHHc-----CC
Confidence            3345999999999999    3   999999999999999999999988 79999999743    344444322     23


Q ss_pred             EEEEcc-----CCcChHHHHHHHHhcCC--CCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEeec
Q 012817           80 EVATVP-----EDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSV  140 (456)
Q Consensus        80 ~~~~~~-----~~~gt~~al~~~~~~l~--~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~~  140 (456)
                      .++..+     ...|+.++++.+++.+.  .+.++++.||.  +...+++.+++.+.+.++++++...+.
T Consensus        67 ~~~~~~~~~~~~~~g~~~sv~~~l~~~~~~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~  136 (228)
T 1ezi_A           67 EVVLRPAELASDTASSISGVIHALETIGSNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPM  136 (228)
T ss_dssp             EEEECCC------CHHHHHHHHHHHHHTCCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEEC
T ss_pred             EEEeCchHHcCCCCChHHHHHHHHHHhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEEEec
Confidence            333222     34677899999887764  35699999994  556689999998877777776666554

>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*

Probab=99.70  E-value=2.9e-16  Score=144.97  Aligned_cols=123  Identities=18%  Similarity=0.259  Sum_probs=82.3

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHC-CCCEEEEEecCchhhHHHHhhhhhhcc-CccceE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYV-DRLHVE   80 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~-gi~~v~iv~~~~~~~~~i~~~~~~~~~-~~~~i~   80 (456)
                      |.+||||||.|+||.+   ...||+|+|++|+|||+|+++++.++ ++++++|++++... +.+.+++.++.. -.....
T Consensus         3 ~~~iIlA~G~g~R~~~---~~~~K~l~~i~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~-~~~~~~~~~~~~~~~~~~~   78 (236)
T 2vsh_A            3 IYAGILAGGTGTRMGI---SNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWV-SHAEDLVDKYLPLYKERII   78 (236)
T ss_dssp             EEEEEEEC--------------CGGGSEETTEEHHHHHHHHHHTCTTCCCEEEEECGGGH-HHHHHHHHHHCGGGGGGEE
T ss_pred             eEEEEeCCccccccCC---CCCCCeeeeeCCccHHHHHHHHHHcCCCCCeEEEEeCHHHH-HHHHHHHHhccccccCceE
Confidence            6899999999999965   35799999999999999999999998 49999999986531 345554433210 001122


Q ss_pred             EEEccCCcChHHHHHHHHhcC----C--C-CcEEEEcCCc--ccCCChhHHHHHHHhcCc
Q 012817           81 VATVPEDVGTAGALRAIAHHL----T--A-KDVLVVSGDL--VSDVPPGAVTAAHRRHDA  131 (456)
Q Consensus        81 ~~~~~~~~gt~~al~~~~~~l----~--~-~~~lv~~~D~--i~~~~l~~~l~~~~~~~a  131 (456)
                      +  .+...|+.++++.+++.+    .  + +.+++++||.  +...+++.+++.|.+.++
T Consensus        79 ~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~  136 (236)
T 2vsh_A           79 I--TKGGADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDA  136 (236)
T ss_dssp             E--EECCSSHHHHHHHHHHHHHHHSCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSE
T ss_pred             E--ECCCCchHHHHHHHHHHHHhhccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCc
Confidence            2  234467888888887765    2  3 5688899995  556689999999987765

>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*

Probab=99.70  E-value=1.1e-15  Score=139.86  Aligned_cols=125  Identities=20%  Similarity=0.160  Sum_probs=91.9

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i   79 (456)
                      |++.+||||||.|+||+    ...||+|+|++|+|||+|+++.+.+++ +++++|++++... +.+..++.     ...+
T Consensus         1 m~~~~vIlA~G~g~R~~----~~~~K~l~~~~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~-~~~~~~~~-----~~~v   70 (223)
T 2xwl_A            1 MATVAVVPAAGSGERLR----AGRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAVPPALT-DESKLVFG-----GEDS   70 (223)
T ss_dssp             -CEEEEEECCCCCGGGT----SSSCGGGSEETTEEHHHHHHHHHHHHSCCSEEEEEECGGGH-HHHHHHTC-----BTTE
T ss_pred             CceEEEEECCccCcccC----CCCCCeeeEECCeEHHHHHHHHHhcCCCCCeEEEEEcccHH-HHHHHHhc-----cCCe
Confidence            88999999999999994    457999999999999999999999987 8999999985431 23444331     1234


Q ss_pred             EEEEccCCcChHHHHHHHHhcC-CCCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEe
Q 012817           80 EVATVPEDVGTAGALRAIAHHL-TAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMIC  138 (456)
Q Consensus        80 ~~~~~~~~~gt~~al~~~~~~l-~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~  138 (456)
                      .+.  .+..+++++++.+++.+ ..+.+++++||.  +...+++.+++.+. .+.++++.+.
T Consensus        71 ~~~--~~~~~~~~~i~~al~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~-~~~~~~i~~~  129 (223)
T 2xwl_A           71 VIV--SGGVDRTESVALALEAAGDAEFVLVHDAARALTPPALIARVVAALK-EGHSAVVPGL  129 (223)
T ss_dssp             EEE--ECCSSHHHHHHHHHTTCTTCSEEEECCTTCTTCCHHHHHHHHHHHH-HTCSEEEEEE
T ss_pred             EEE--cCCCCHHHHHHHHHHhcCCCCEEEEEcCCcccCCHHHHHHHHHHHh-hcCCeEEEEE
Confidence            444  23456789999998887 445688899994  45557999999883 2234444443

>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19

Probab=99.69  E-value=6.9e-17  Score=148.88  Aligned_cols=118  Identities=25%  Similarity=0.325  Sum_probs=92.5

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |+|.+||||||. +||.+. ....||+|+|++|+|||+|+++.+..++. +++|++..    +.+.+++        ++.
T Consensus         1 m~~~~vIlAaG~-tRl~~r-~~~~~K~l~~i~g~pll~~~l~~l~~~~~-~ivvv~~~----~~i~~~~--------~~~   65 (232)
T 2dpw_A            1 MRPSAIVLAGGK-EAWAER-FGVGSKALVPYRGRPMVEWVLEALYAAGL-SPVYVGEN----PGLVPAP--------ALT   65 (232)
T ss_dssp             CCCEEEEECCCB-CSGGGT-TTCSBGGGSEETTEETHHHHHHHHHHTTC-EEEEESCC----SSCSSCC--------SEE
T ss_pred             CceeEEEECCCC-Cccccc-cCCCCceeeEECCEEHHHHHHHHHHhcCC-EEEEEeCh----HHHhhhc--------CeE
Confidence            889999999999 766655 34589999999999999999999999988 88887542    1233222        233


Q ss_pred             EEEccCCcChHHHHHHHHhcCCCCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEee
Q 012817           81 VATVPEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICS  139 (456)
Q Consensus        81 ~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~  139 (456)
                      +   +...|++++++.+++.+. +.+++++||.  +...+++.+++ | +.++++++...+
T Consensus        66 ~---~~~~g~~~~i~~a~~~~~-~~~lv~~~D~P~~~~~~i~~l~~-~-~~~~~~~~~~~~  120 (232)
T 2dpw_A           66 L---PDRGGLLENLEQALEHVE-GRVLVATGDIPHLTEEAVRFVLD-K-APEAALVYPIVP  120 (232)
T ss_dssp             E---CCCSSHHHHHHHHHHTCC-SEEEEEETTCTTCCHHHHHHHHH-H-CCSCSEEEEEEE
T ss_pred             e---cCCCCHHHHHHHHHHHcC-CCEEEEeCCcccCCHHHHHHHHh-c-CCCCCEEEEEee
Confidence            3   567899999999998886 7899999995  66677999998 6 556677666554

>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*

Probab=99.69  E-value=7.6e-16  Score=141.91  Aligned_cols=103  Identities=17%  Similarity=0.243  Sum_probs=73.6

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~   81 (456)
                      +|.+||||||.|+||+|+     ||+|+|++|+|||+|+++++.++ +++++|++ +..  +.+.+++...+  ..++.+
T Consensus        18 ~~~~iIlA~G~g~R~~~~-----~K~l~~i~g~pli~~~l~~l~~~-~~~i~vv~-~~~--~~~~~~~~~~~--~~~~~~   86 (232)
T 2xme_A           18 LMKAVILAAGLGTRLGGV-----PKPLVRVGGCEIILRTMKLLSPH-VSEFIIVA-SRY--ADDIDAFLKDK--GFNYKI   86 (232)
T ss_dssp             CEEEEEEECC------CC-----CGGGCEETTEEHHHHHHHHHGGG-EEEEEEEE-STT--HHHHHHHHTTS--CCCEEE
T ss_pred             cceEEEECCcCcCcCCCC-----CcEEeEECCEEHHHHHHHHHHHh-CCEEEEEe-CCh--HHHHHHHHHhc--CCcEEE
Confidence            478999999999999654     99999999999999999999988 99999998 432  23333322211  123566


Q ss_pred             EEccCC-cChHHHHHHHHhcCCCCcEEEEcCCcccC
Q 012817           82 ATVPED-VGTAGALRAIAHHLTAKDVLVVSGDLVSD  116 (456)
Q Consensus        82 ~~~~~~-~gt~~al~~~~~~l~~~~~lv~~~D~i~~  116 (456)
                      +..+.. .|++++++.+++.+. +++++++||..++
T Consensus        87 v~~~~~~~g~~~~i~~a~~~~~-~~~lv~~~D~p~~  121 (232)
T 2xme_A           87 VRHDRPEKGNGYSLLVAKNHVE-DRFILTMGDHVYS  121 (232)
T ss_dssp             EECSCGGGCHHHHHHTTGGGCC-SSEEEEETTEEEC
T ss_pred             EECCCCCCCcHHHHHHHHHHCC-CCEEEEcCCcccC
Confidence            654444 799999999998886 6799999997654

>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*

Probab=99.67  E-value=7.2e-16  Score=141.61  Aligned_cols=120  Identities=17%  Similarity=0.241  Sum_probs=85.1

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHC-CCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~-gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      ++.+||||||.|+||    ....||+|+|++|+|||+|+++.+.++ ++++++|++++...  .+.+++...+  ..++.
T Consensus         4 ~~~aiIlAaG~g~R~----~~~~~K~l~~i~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~--~~~~~~~~~~--~~~v~   75 (228)
T 2yc3_A            4 SVSVILLAGGQGKRM----KMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFR--DIFEEYEESI--DVDLS   75 (228)
T ss_dssp             CEEEEEECCCCC-----------CGGGSEETTEEHHHHHHHHHHHCTTEEEEEEECCGGGH--HHHHTTTTTS--SSEEE
T ss_pred             ceEEEEECCcccccc----CCCCCccEeEECCEEHHHHHHHHHHcCCCCCeEEEEEChHHH--HHHHHHHHhC--CCcEE
Confidence            478999999999999    445799999999999999999999998 79999999985431  2333232211  11233


Q ss_pred             EEEccCCcChHHHHHHHHhcCCC--CcEEEEcCC--cccCCChhHHHHHHHhcCc
Q 012817           81 VATVPEDVGTAGALRAIAHHLTA--KDVLVVSGD--LVSDVPPGAVTAAHRRHDA  131 (456)
Q Consensus        81 ~~~~~~~~gt~~al~~~~~~l~~--~~~lv~~~D--~i~~~~l~~~l~~~~~~~a  131 (456)
                      ++  ....|+.++++.+++.+..  +.++++.||  ++...+++.+++.|.+.++
T Consensus        76 ~~--~~~~~~~~sv~~al~~~~~~~~~vl~~d~d~P~~~~~~i~~l~~~~~~~~~  128 (228)
T 2yc3_A           76 FA--IPGKERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGA  128 (228)
T ss_dssp             EE--CCCSSHHHHHHHHHTTSCTTCSEEEEEETTCTTCCHHHHHHHHHHHHHHSE
T ss_pred             EE--CCCCCHHHHHHHHHHhhccCCCEEEEecCCCccCCHHHHHHHHHHHHhcCc
Confidence            33  3447889999999988753  457888898  4555679999999877654

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.64  E-value=3.2e-15  Score=138.35  Aligned_cols=138  Identities=17%  Similarity=0.259  Sum_probs=99.1

Q ss_pred             cCcch----hhcccCHHHHHHHhHhhhccccccC--CCcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-e
Q 012817          308 SNSKY----CVRLNSIQAFMDINRDVIGEANHLS--GYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-R  380 (456)
Q Consensus       308 ~~~~~----~~~i~~~~~y~~~~~~~l~~~~~~~--~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-~  380 (456)
                      ...+|    |.++++   |++.++.+|.......  ...........++.+.|++++.|++++.||++|.|++++.|. +
T Consensus        45 ~~~~~~~g~w~di~~---~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~~~a~I~~~v~Ig~~~~I~~~s~I~~~  121 (240)
T 3r8y_A           45 KKSGVLFGEWSEIKT---ILDENSKYIVDYVVENDRRNSAIPMLDLKGIKARIEPGAIIRDHVEIGDNAVIMMNATINIG  121 (240)
T ss_dssp             SSEEEEEEEHHHHHH---HHHHTTTTEEEEEEEECCBSBCSCBCCCTTCSSEECTTCEEBSSCEECTTCEECTTCEECTT
T ss_pred             CCCeEEEccHHHHHH---HHHhccceechhhhhhhhhhhccchhhccCCCCEECCCCEECCCcEECCCCEECCCCEECCC
Confidence            44555    888876   7788887764321110  000111122234455555556666666666666666666663 4


Q ss_pred             eEECCCCEECCCcEEe-CeEECCCCEECCCcEEcC---------eEECCCCEECCCcEe-cCeEECCCCEECCCcEEcC
Q 012817          381 SVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQG---------SVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       381 s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~~---------~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~~  448 (456)
                      ++||++|.|+.+|.|+ +|+|+++|.||+++.+.+         ++|+++|.||.+++| .+++||++++|++++.+.+
T Consensus       122 ~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~~~IG~~~~I~~~~~Ig~~~~I~~gsvV~~  200 (240)
T 3r8y_A          122 AVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTE  200 (240)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSCTTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             CEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccCCCCCCcEECCCCEECCCCEECCCcEECCCCEECCCCEECC
Confidence            7999999999999997 899999999999999986         999999999999988 7999999999999998865

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A

Probab=99.64  E-value=6.9e-15  Score=135.26  Aligned_cols=119  Identities=16%  Similarity=0.167  Sum_probs=81.4

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i   79 (456)
                      |+|.+||||||.|+||++    ..||+|+|++|+|||+|+++.+..++ +++++|++++..  +.+.+ +.+...  ..+
T Consensus         5 ~~~~aiIlA~G~g~R~~~----~~~K~l~~~~gkpli~~~l~~l~~~~~~~~ivvv~~~~~--~~~~~-~~~~~~--~~i   75 (231)
T 1vgw_A            5 RKNIALIPAAGIGVRFGA----DKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPED--TFADK-VQTAFP--QVR   75 (231)
T ss_dssp             CCEEEEEECC--------------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTC--STHHH-HHHHCT--TSE
T ss_pred             CceEEEEEcccccccCCC----CCCceEeEECCeEHHHHHHHHHHcCCCCCeEEEEECccH--HHHHH-HHhcCC--Cce
Confidence            467899999999999953    47999999999999999999999885 899999997542  23443 322111  123


Q ss_pred             EEEEccCCcChHHHHHHHHhcC-------CCCcEEEEcCC--cccCCChhHHHHHHHhcC
Q 012817           80 EVATVPEDVGTAGALRAIAHHL-------TAKDVLVVSGD--LVSDVPPGAVTAAHRRHD  130 (456)
Q Consensus        80 ~~~~~~~~~gt~~al~~~~~~l-------~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~  130 (456)
                      .+  ..+..|++++++.+++.+       ..+.+++++||  ++....++.+++.+.+.+
T Consensus        76 ~~--~~~~~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~  133 (231)
T 1vgw_A           76 VW--KNGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAA  133 (231)
T ss_dssp             EE--CCCCSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCT
T ss_pred             EE--EcCCCcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcC
Confidence            33  345678999999887665       34679999999  344567999999887654

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.62  E-value=7.5e-15  Score=130.92  Aligned_cols=108  Identities=16%  Similarity=0.278  Sum_probs=92.3

Q ss_pred             ccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe----eeEECCCCEECCCcEEe------CeEECCCCEECCCc
Q 012817          341 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKVV------NSVVMNHVTIGDGC  410 (456)
Q Consensus       341 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~----~s~Ig~~~~ig~~~~i~------~s~i~~~~~ig~~~  410 (456)
                      +..+...|++++.|++++.|.+++.||++|.|++++.|.    +.+||++|.|+++|.|.      +++|+++|.||+++
T Consensus        29 ~~~~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~  108 (191)
T 3ixc_A           29 YAGVSPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSC  108 (191)
T ss_dssp             BTTBCCEECTTSEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTTCEECTTC
T ss_pred             ccCCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCCCEECCCC
Confidence            344667777888888888888888888888888888886    34999999999999998      89999999999999


Q ss_pred             EEcCeEECCCCEECCCcEec-CeEECCCCEECCCcEEcC
Q 012817          411 SIQGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       411 ~i~~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~  448 (456)
                      .|.+++|+++|.||++++|. ++.||++++|++++.+..
T Consensus       109 ~i~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~gsvV~~  147 (191)
T 3ixc_A          109 ILHACTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTR  147 (191)
T ss_dssp             EECSCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             EEECCEECCCCEECCCCEEeCCeEECCCCEECCCCEECC
Confidence            99999999999999999885 588888888888877764

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.61  E-value=1.1e-14  Score=127.64  Aligned_cols=107  Identities=17%  Similarity=0.268  Sum_probs=91.8

Q ss_pred             cCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEee----eEECCCCEECCCcEEe-----CeEECCCCEECCCcEE
Q 012817          342 SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR----SVIGRHCRIGSNVKVV-----NSVVMNHVTIGDGCSI  412 (456)
Q Consensus       342 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~----s~Ig~~~~ig~~~~i~-----~s~i~~~~~ig~~~~i  412 (456)
                      ......+++++.|++++.+.+++.||++|.|++++.|..    ++||++|.|+++|.|.     +++|+++|.||+++.|
T Consensus         9 ~~~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i   88 (173)
T 1xhd_A            9 KEKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVIL   88 (173)
T ss_dssp             TTBCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEE
T ss_pred             CCCCCEECCCcEECCCCEEECCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEE
Confidence            345666777888888888878888888888888888874    7999999999999998     7899999999999999


Q ss_pred             cCeEECCCCEECCCcEec-CeEECCCCEECCCcEEcC
Q 012817          413 QGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       413 ~~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~  448 (456)
                      .+++|+++|.|+++++|. ++.||++++|++++.+..
T Consensus        89 ~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~  125 (173)
T 1xhd_A           89 HSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQ  125 (173)
T ss_dssp             ESCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             eCCEECCCCEEcCCCEEcCCCEECCCCEECCCCEECC
Confidence            999999999999999875 688888888888888763

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.60  E-value=1.5e-14  Score=129.33  Aligned_cols=108  Identities=15%  Similarity=0.255  Sum_probs=86.8

Q ss_pred             CCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe----eeEECCCCEECCCcEEe-----------------CeEEC
Q 012817          343 AQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKVV-----------------NSVVM  401 (456)
Q Consensus       343 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~----~s~Ig~~~~ig~~~~i~-----------------~s~i~  401 (456)
                      .++..|+|++.|++++.|++++.||++|.|+++|.|.    +..||++|.|++++.|.                 +++|+
T Consensus        10 ~~~v~I~~~a~I~~~a~I~g~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~Ig   89 (194)
T 3tv0_A           10 QKSVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMIIG   89 (194)
T ss_dssp             --CEEECTTCEECTTSEEESSEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCEEEC
T ss_pred             CCCCEECCCCEEcCCCEEeCCCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCceEEC
Confidence            3577788888888888888888888888888888885    36899999999999985                 35788


Q ss_pred             CCCEECCCcEEcCeEECCCCEECCCcEec-CeEECCCCEECCCcEEcCCe
Q 012817          402 NHVTIGDGCSIQGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGES  450 (456)
Q Consensus       402 ~~~~ig~~~~i~~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~~~  450 (456)
                      +++.|+.++.+.++.|++++.|+.+++|. ++.||++++|++++.+...+
T Consensus        90 ~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~gv~IG~~~~IgagsvV~~~~  139 (194)
T 3tv0_A           90 TNNVFEVGCYSQAMKMGDNNVIESKAYVGRNVILTSGCIIGACCNLNTFE  139 (194)
T ss_dssp             SSCEECTTCEECCSEECSSCEECTTCEECTTEEECSSCEECTTCEECCCE
T ss_pred             CcceEecceeEeeeeecccceecceeeECCeEEECCCCEECCCCEECCCc
Confidence            99999988888888888888888888774 77777777777777776543

>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13

Probab=99.60  E-value=6.1e-15  Score=135.55  Aligned_cols=122  Identities=14%  Similarity=0.120  Sum_probs=92.1

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i   79 (456)
                      |++.|||||||.|+||    .   +|+|+|++|+|||+|+++.+.+++ +++++|++...    .+.+++...     ++
T Consensus         2 ~~~~aiIlA~G~s~R~----~---~K~l~~i~Gkpli~~~i~~~~~~~~~~~ivv~~~~~----~i~~~~~~~-----g~   65 (229)
T 1qwj_A            2 PHLAALVLARGGSKGI----P---LKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHD----EIENVAKQF-----GA   65 (229)
T ss_dssp             CCEEEEEECCSCCSSS----S---CTTTSEETTEEHHHHHHHHHHHHTCCSEEEEEESCH----HHHHHHHHT-----TC
T ss_pred             CcEEEEEEcCCCCCCC----C---CcccceECCEEHHHHHHHHHHhCCCcCEEEEECChH----HHHHHHHHc-----CC
Confidence            7788999999999999    2   599999999999999999999988 69999998532    444444332     24


Q ss_pred             EEEEcc-----CCcChHHHHHHHHhcC-CCCcEEEEcCC--cccCCChhHHHHHHHhcCceEEEEEe
Q 012817           80 EVATVP-----EDVGTAGALRAIAHHL-TAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMIC  138 (456)
Q Consensus        80 ~~~~~~-----~~~gt~~al~~~~~~l-~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~~~~  138 (456)
                      .++..+     ...+..++++.+++.+ ..+.++++.||  ++...+++.+++.|.+.+++.++.+.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~v~~al~~~~~~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~~  132 (229)
T 1qwj_A           66 QVHRRSSETSKDSSTSLDAIVEFLNYHNEVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVV  132 (229)
T ss_dssp             EEEECCGGGSSTTCCHHHHHHHHHTTCTTCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEE
T ss_pred             EEEeChhhhcCCCCcHHHHHHHHHHhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEEe
Confidence            444433     1234458888888877 34669999999  45567899999999887776544443

>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}

Probab=99.59  E-value=7.8e-16  Score=137.98  Aligned_cols=128  Identities=20%  Similarity=0.318  Sum_probs=88.2

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~   82 (456)
                      |++||||||.|+||.|     .||+|+|++|+|||+|+++++.++++++++|++++..  +.+.+++.+.+.....+.++
T Consensus         1 m~aiIlA~G~s~R~~~-----~~K~l~~~~g~pli~~~l~~l~~~~~~~v~vv~~~~~--~~i~~~~~~~~~~~~~~~~~   73 (196)
T 3rsb_A            1 MDALIMAGGKGTRMGG-----VEKPLIKLCGRCLIDYVVSPLLKSKVNNIFIATSPNT--PKTKEYINSAYKDYKNIVVI   73 (196)
T ss_dssp             CEEEEEC----CGGGG-----SCGGGCEETTEEHHHHHHHHHHSSSCCCEEEECCTTC--HHHHHHHHHHTTTTTEEEE-
T ss_pred             CEEEEECCCCCCcCCC-----CCccEEEECCEEHHHHHHHHHHHCCCCEEEEEeCCCh--HHHHHHHHhhccCCCCEEEE
Confidence            6899999999999954     6999999999999999999999999999999997552  35555554422111123333


Q ss_pred             EccCCcChHHHHHHHHhcCCCCcEEEEcCCc--ccCCChhHHHHHHHh-----cCceEEEEEee
Q 012817           83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRR-----HDAVVTAMICS  139 (456)
Q Consensus        83 ~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~--i~~~~l~~~l~~~~~-----~~a~~t~~~~~  139 (456)
                       .+...|++++++.+++.+ .+.++++.||.  +....++++++.+.+     .+.+..+.+.+
T Consensus        74 -~~~~~g~~~si~~al~~~-~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p  135 (196)
T 3rsb_A           74 -DTSGKGYIEDLNECIGYF-SEPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALAVMIP  135 (196)
T ss_dssp             --------CCCCCTTTTTC-SSCEEEEETTEESCCHHHHHHHHHHHHHHHTTCC--CEEEEEEE
T ss_pred             -ECCCCCcHHHHHHHHHhC-CCCEEEEeCCcccCCHHHHHHHHHHHHhhhcccCCCceEEEEEE
Confidence             344578888888888877 68899999995  677789999999987     55555444443

>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A

Probab=99.59  E-value=3.8e-14  Score=130.77  Aligned_cols=119  Identities=20%  Similarity=0.244  Sum_probs=88.7

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i   79 (456)
                      |++.+||||||.|+||    ....||+|+|++|+|||+|+++.+.+++ +++++|++++..  +.+.. +.... . ..+
T Consensus         6 ~~~~~iIlA~G~g~R~----~~~~~K~l~~i~g~pll~~~i~~l~~~~~~~~ivvv~~~~~--~~~~~-~~~~~-~-~~v   76 (236)
T 1i52_A            6 LDVCAVVPAAGFGRRM----QTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGD--SRFAQ-LPLAN-H-PQI   76 (236)
T ss_dssp             CCEEEEEEECCCCGGG----CCSSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTC--CSGGG-SGGGG-C-TTE
T ss_pred             CceeEEEECCcCcccc----CCCCCcceeeECCEEHHHHHHHHHHhCCCCCeEEEEeCccH--HHHHH-HHhcC-C-CCE
Confidence            5689999999999999    4457999999999999999999999887 899999997542  12322 22211 1 124


Q ss_pred             EEEEccCCcChHHHHHHHHhcCC-CCcEEEEcCCc--ccCCChhHHHHHHHhcC
Q 012817           80 EVATVPEDVGTAGALRAIAHHLT-AKDVLVVSGDL--VSDVPPGAVTAAHRRHD  130 (456)
Q Consensus        80 ~~~~~~~~~gt~~al~~~~~~l~-~~~~lv~~~D~--i~~~~l~~~l~~~~~~~  130 (456)
                      .++  ....|+.++++.+++.+. .+.+++++||.  +....++.+++.+.+.+
T Consensus        77 ~~~--~~~~g~~~~i~~al~~~~~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~  128 (236)
T 1i52_A           77 TVV--DGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSR  128 (236)
T ss_dssp             EEE--ECCSSHHHHHHHHHHTSTTCSEEEECCTTCTTCCHHHHHHHHGGGGTCS
T ss_pred             EEE--CCCCCHHHHHHHHHHhcCCCCEEEEEcCccccCCHHHHHHHHHHHHhcC
Confidence            443  234688999999988874 46799999994  44456888888876654

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.58  E-value=2.7e-14  Score=127.49  Aligned_cols=107  Identities=20%  Similarity=0.281  Sum_probs=70.8

Q ss_pred             cCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEee-eEECCCCEECCCcEEe-CeEECCCCEECCCcEE-------
Q 012817          342 SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSI-------  412 (456)
Q Consensus       342 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i-------  412 (456)
                      +.+++.|++++.|++++.|++++.||++|.|++++.|.+ +.||++|.|++++.|. ++.|++++.||.++.+       
T Consensus        12 I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~ig~~~~~~~~~~~~   91 (192)
T 3mqg_A           12 VDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNVYNPR   91 (192)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECTTEEECTTCEECTTCBCCSCSSCB
T ss_pred             ECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeCCCEECCCCEECCceEEecccCCc
Confidence            334444444444444445555555555555555555553 5666666666666664 5556666666666555       


Q ss_pred             ---------cCeEECCCCEECCCcEec-CeEECCCCEECCCcEEcC
Q 012817          413 ---------QGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       413 ---------~~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~  448 (456)
                               ..++|+++|.||.+++|. +++||++++|++++.+..
T Consensus        92 ~~~~~~~~~~~~~Ig~~v~IG~~~~I~~g~~Ig~~~~IgagsvV~~  137 (192)
T 3mqg_A           92 AAIERKSEYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVVNK  137 (192)
T ss_dssp             TTBCCGGGCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             cccccccccCCcEECCCcEECCCCEECCCCEECCCCEEcCCCEECc
Confidence                     348999999999999875 899999999999988764

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.58  E-value=2.1e-14  Score=127.60  Aligned_cols=105  Identities=12%  Similarity=0.136  Sum_probs=85.8

Q ss_pred             CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEee----eEECCCCEECCCcEE------------eCeEECCCCEEC
Q 012817          344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR----SVIGRHCRIGSNVKV------------VNSVVMNHVTIG  407 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~----s~Ig~~~~ig~~~~i------------~~s~i~~~~~ig  407 (456)
                      ....+++++.|++++.+++++.||++|.|++++.|..    +.||++|.|++++.|            .+++|+++|.||
T Consensus        14 ~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig   93 (187)
T 3r3r_A           14 LFPGIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVG   93 (187)
T ss_dssp             BCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEEC
T ss_pred             cCcccCCCeEECCCCEEECceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCCEEC
Confidence            4555666667777777777777777777777777763    499999999999999            578999999999


Q ss_pred             CCcEEcCeEECCCCEECCCcEe-cCeEECCCCEECCCcEEcC
Q 012817          408 DGCSIQGSVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       408 ~~~~i~~~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~~  448 (456)
                      +++.|.+++||++|.||++++| .++.||++++|++++.+..
T Consensus        94 ~~~~i~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~s~V~~  135 (187)
T 3r3r_A           94 HKVMLHGCTIGNRVLVGMGSIVLDGAIIEDDVMIGAGSLVPQ  135 (187)
T ss_dssp             TTCEEESCEECSSEEECTTCEECTTCEECSSEEECTTCEECT
T ss_pred             CCCEEeCcEECCCCEECCCCEECCCCEECCCCEECCCCEECC
Confidence            9999999999999999999988 4688888888888877764

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.58  E-value=3e-14  Score=124.96  Aligned_cols=105  Identities=18%  Similarity=0.283  Sum_probs=81.7

Q ss_pred             CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEee----eEECCCCEECCCcEEe-----CeEECCCCEECCCcEEcC
Q 012817          344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR----SVIGRHCRIGSNVKVV-----NSVVMNHVTIGDGCSIQG  414 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~----s~Ig~~~~ig~~~~i~-----~s~i~~~~~ig~~~~i~~  414 (456)
                      ....+++++.|++++.+.+++.||++|.|++++.|..    +.||++|.|++++.|.     +++|+++|.|++++.|.+
T Consensus         9 ~~~~i~~~~~I~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~   88 (173)
T 1v3w_A            9 KKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHG   88 (173)
T ss_dssp             BCCEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEES
T ss_pred             CCCEECCCCEECCCCEEeCCEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECC
Confidence            4455666666777777766777777777777777764    7889999999998887     478899999998888888


Q ss_pred             eEECCCCEECCCcEec-CeEECCCCEECCCcEEcC
Q 012817          415 SVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       415 ~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~  448 (456)
                      ++|+++|.|+.++.|. +++||++++|++++.+..
T Consensus        89 ~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~  123 (173)
T 1v3w_A           89 AKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPP  123 (173)
T ss_dssp             CEECSSEEECTTCEECTTCEECSSEEECTTCEECT
T ss_pred             CEECCCCEECCCCEEeCCCEECCCCEECCCCEECC
Confidence            8888888888888764 677777777777777653

>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A

Probab=99.58  E-value=8.1e-15  Score=131.25  Aligned_cols=112  Identities=27%  Similarity=0.390  Sum_probs=86.5

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |++.+||||||.|+||      +.||+|+|++|+|||+|+++.+..+++++++|++++..  +.+.+++.+     .++.
T Consensus         4 ~~~~~iIlA~G~~~R~------g~~K~l~~~~g~pll~~~l~~l~~~~~~~i~vv~~~~~--~~~~~~~~~-----~~~~   70 (197)
T 2wee_A            4 TQITGVVLAAGRSNRL------GTPKQLLPYRDTTVLGATLDVARQAGFDQLILTLGGAA--SAVRAAMAL-----DGTD   70 (197)
T ss_dssp             SEEEEEEEECCCCTTT------SSCGGGSEETTEEHHHHHHHHHHHTTCSEEEEEECTTH--HHHHHHSCC-----TTSE
T ss_pred             CceEEEEECCCCcccC------CCCeEcCeeCCccHHHHHHHHHHhcCCCcEEEEeCCCH--HHHHHHhcc-----CCCE
Confidence            4578999999999999      38999999999999999999999999999999997542  345554432     2345


Q ss_pred             EEEccC-CcChHHHHHHHHhcCC--CCcEEEEcCCc--ccCCChhHHHHH
Q 012817           81 VATVPE-DVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAA  125 (456)
Q Consensus        81 ~~~~~~-~~gt~~al~~~~~~l~--~~~~lv~~~D~--i~~~~l~~~l~~  125 (456)
                      ++..+. ..|++++++.+++.+.  .+.+++++||.  +....++.+++.
T Consensus        71 ~~~~~~~~~g~~~~i~~al~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~  120 (197)
T 2wee_A           71 VVVVEDVERGCAASLRVALARVHPRATGIVLMLGDQPQVAPATLRRIIDV  120 (197)
T ss_dssp             EEECC----CCHHHHHHHHTTSCTTEEEEEEEETTCTTCCHHHHHHHHHH
T ss_pred             EEECCCcccCHHHHHHHHHHHhcccCCeEEEEeCCcCCCCHHHHHHHHhh
Confidence            554332 3689999999998873  45699999995  445678888876

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.57  E-value=2.6e-14  Score=129.75  Aligned_cols=84  Identities=14%  Similarity=0.219  Sum_probs=49.2

Q ss_pred             CEECCCCEECCCCeEee---------------eEECCCCEECCCcEEeC-eEECCCCEECCCcEEcCeEECCCCEECCCc
Q 012817          364 CMLGEGSQMGDKCSVKR---------------SVIGRHCRIGSNVKVVN-SVVMNHVTIGDGCSIQGSVICSNAQLQERV  427 (456)
Q Consensus       364 ~~i~~~~~I~~~~~i~~---------------s~Ig~~~~ig~~~~i~~-s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~  427 (456)
                      +.||++|.|+++|.|..               ++||++|.|++++.|.+ ++|+++|.||.++.|.+++|+++|.|++++
T Consensus        80 v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~~~Ig~~~~Igags  159 (213)
T 3kwd_A           80 FHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVFNARVGAGCVVMMHV  159 (213)
T ss_dssp             EEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSC
T ss_pred             eEECCCCEECCCCEEEecCCCceeccCCcccceEECCCcEECCCcEEcCCCEECCCCEECCCCEEeCcEECCCCEEcCCC
Confidence            34455555555555542               55666666666666653 556666666666666556666666666666


Q ss_pred             EecCeEECCCCEECCCcEEc
Q 012817          428 ALKDCQVGQGYVVSAGCEYK  447 (456)
Q Consensus       428 ~i~~~~i~~~~~v~~~~~~~  447 (456)
                      +|.+++|++++.|++++.+.
T Consensus       160 ~V~~~~i~~~~~v~~~~vv~  179 (213)
T 3kwd_A          160 LIQDVEIPPGKYVPSGMVIT  179 (213)
T ss_dssp             EEESCEECTTBEECTTCEEC
T ss_pred             EECCcEeCCCCEECCCcEEc
Confidence            66556666666666655554

>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}

Probab=99.57  E-value=1.2e-14  Score=130.22  Aligned_cols=118  Identities=25%  Similarity=0.370  Sum_probs=90.2

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |++.+||||||.|+||      +.||+|+|++|+|||+|+++.+..+++++++|++++..  +.+.+++.+     .++.
T Consensus         4 ~~~~~iIlA~G~~~R~------g~~K~l~~~~g~pli~~~l~~l~~~~~~~i~vv~~~~~--~~~~~~~~~-----~~~~   70 (199)
T 2waw_A            4 SRVTGVVLAAGYSRRL------GTPKQLLPLGDTTLLGATLAMARRCPFDQLIVTLGGAA--DEVLEKVEL-----DGLD   70 (199)
T ss_dssp             CCEEEEEEESSCCTTT------TSCGGGCEETTEEHHHHHHHHHHTSSCSEEEEEECTTH--HHHHHHSCC-----TTSE
T ss_pred             CceEEEEECCCCCCCC------CCCEEeCEeCccCHHHHHHHHHHhCCCCcEEEEeCCCH--HHHHHHhcc-----CCCE
Confidence            4578999999999999      37999999999999999999999999999999997542  345544432     2344


Q ss_pred             EEEcc-CCcChHHHHHHHHhcC--CCCcEEEEcCCc--ccCCChhHHHHHHHhcCceE
Q 012817           81 VATVP-EDVGTAGALRAIAHHL--TAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVV  133 (456)
Q Consensus        81 ~~~~~-~~~gt~~al~~~~~~l--~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~  133 (456)
                      ++..+ ...|++++++.+++.+  ..+.+++++||.  +...+++.+++.  +.++++
T Consensus        71 ~~~~~~~~~g~~~~i~~al~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~~  126 (199)
T 2waw_A           71 IVLVDDAGLGCSSSLKSALTWVDPTAEGIVLMLGDQPGITASAVASLIAG--GRGATI  126 (199)
T ss_dssp             EEECCCCCTTCCCHHHHHHHTSCTTCSEEEEEETTCTTCCHHHHHHHHHH--HTTCSE
T ss_pred             EEECCCcccCHHHHHHHHHHhhhccCCeEEEEeCCcccCCHHHHHHHHhh--cCCCCE
Confidence            54433 2468889999998887  446799999995  456678888887  344443

>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13

Probab=99.56  E-value=9.4e-14  Score=127.91  Aligned_cols=119  Identities=20%  Similarity=0.235  Sum_probs=86.0

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      .+.|||||||.|+||    ....||+|+|++|+|||+|+++.+.+++ +++++|++++... +.+.+++.  +  ...+.
T Consensus        13 ~~~aiILAaG~s~Rm----~~~~~K~l~~i~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~-~~~~~~~~--~--~~~~~   83 (234)
T 1vpa_A           13 MNVAILLAAGKGERM----SENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWF-EVVEKRVF--H--EKVLG   83 (234)
T ss_dssp             CEEEEEEECCCCGGG----CCSSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGH-HHHHTTCC--C--TTEEE
T ss_pred             cCeEEEEcCcchhhc----CCCCCceEEEECCeEHHHHHHHHHHcCCCCCeEEEEEChHHH-HHHHHHhc--c--CCceE
Confidence            478999999999999    4457999999999999999999999998 8999999985431 12233322  1  11122


Q ss_pred             EEEccCCcChHHHHHHHHhcCC---CCcEEEEcCC--cccCCChhHHHHHHHhcCc
Q 012817           81 VATVPEDVGTAGALRAIAHHLT---AKDVLVVSGD--LVSDVPPGAVTAAHRRHDA  131 (456)
Q Consensus        81 ~~~~~~~~gt~~al~~~~~~l~---~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a  131 (456)
                        ......+..++++.+++.+.   .+.+++++||  ++....++.+++.+.+.++
T Consensus        84 --~~~gg~~~~~sv~~al~~~~~~~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~~~  137 (234)
T 1vpa_A           84 --IVEGGDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGA  137 (234)
T ss_dssp             --EEECCSSHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSE
T ss_pred             --EeCCCCcHHHHHHHHHHHhhhcCCCEEEEecCcccCCCHHHHHHHHHHHHhcCC
Confidence              22333457788888876652   3457888899  4556679999998876544

>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*

Probab=99.56  E-value=3.5e-13  Score=123.49  Aligned_cols=113  Identities=18%  Similarity=0.233  Sum_probs=88.3

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~   81 (456)
                      +.+||||||.|+||    ....||+|+|++|||||+|+++.+.+++ +++++|++++.. .+.+++++..      .+.+
T Consensus         8 ~~aIIlAaG~g~Rm----g~~~~K~l~~l~Gkpll~~~l~~~~~~~~~~~ivVv~~~~~-~~~~~~~~~~------~v~~   76 (231)
T 3q80_A            8 VVAIVPAAGSGERL----AVGVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADR-TDEARQILGH------RAMI   76 (231)
T ss_dssp             EEEEEECCCCCTTT----CSSSCGGGCEETTEEHHHHHHHHHHHTSCCCEEEEEECGGG-HHHHHHHHGG------GCEE
T ss_pred             eEEEEECCCCCccC----CCCCCceEEEECCeEHHHHHHHHHHhCCCCCeEEEECChHH-HHHHHHHhcC------CeEE
Confidence            57999999999999    5668999999999999999999999875 899999998553 2344443322      2444


Q ss_pred             EEccCCcChHHHHHHHHhcCCC----CcEEEEcCC--cccCCChhHHHHHHHh
Q 012817           82 ATVPEDVGTAGALRAIAHHLTA----KDVLVVSGD--LVSDVPPGAVTAAHRR  128 (456)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~l~~----~~~lv~~~D--~i~~~~l~~~l~~~~~  128 (456)
                      +  ....+..++++.+++.+.+    +.++++.||  ++....++.+++.+.+
T Consensus        77 v--~gg~~r~~sv~~gl~~~~~~~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~  127 (231)
T 3q80_A           77 V--AGGSNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRD  127 (231)
T ss_dssp             E--ECCSSHHHHHHHHHGGGC---CCSEEEECCTTCTTCCHHHHHHHHHHHHT
T ss_pred             E--cCCCchHHHHHHHHHHhhhcCCCCEEEEEcCCcCCCCHHHHHHHHHHHhh
Confidence            4  3445667899999888753    468999999  6667789999998876

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.56  E-value=5e-14  Score=127.85  Aligned_cols=105  Identities=19%  Similarity=0.198  Sum_probs=86.7

Q ss_pred             CceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-----eeEECCCCEECCCcEEeC---------------eEECCCC
Q 012817          345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-----RSVIGRHCRIGSNVKVVN---------------SVVMNHV  404 (456)
Q Consensus       345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-----~s~Ig~~~~ig~~~~i~~---------------s~i~~~~  404 (456)
                      ...+++++.|++++.+++++.||++|.|+++|.|.     +++||++|.|+++|.|..               ++|+++|
T Consensus        39 ~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v  118 (213)
T 3kwd_A           39 EPEIAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNV  118 (213)
T ss_dssp             CCEECTTCEECTTSEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTC
T ss_pred             CCcCCCCCEECCCCEEeCceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCCc
Confidence            34555666666666666667777777777777774     379999999999999974               8899999


Q ss_pred             EECCCcEEcC-eEECCCCEECCCcEecCeEECCCCEECCCcEEcCC
Q 012817          405 TIGDGCSIQG-SVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGE  449 (456)
Q Consensus       405 ~ig~~~~i~~-~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~~~~~~  449 (456)
                      .||.++.|.+ ++||++|.||++++|.+++||++++|++++.+.+.
T Consensus       119 ~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~~~Ig~~~~Igags~V~~~  164 (213)
T 3kwd_A          119 SITHMALIHGPAYIGDGCFIGFRSTVFNARVGAGCVVMMHVLIQDV  164 (213)
T ss_dssp             EECTTCEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEESC
T ss_pred             EECCCcEEcCCCEECCCCEECCCCEEeCcEECCCCEEcCCCEECCc
Confidence            9999999985 99999999999999988999999999999998543

>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}

Probab=99.56  E-value=5.5e-14  Score=141.52  Aligned_cols=192  Identities=13%  Similarity=0.144  Sum_probs=127.1

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccC-CcchHHHHHHHHHHC----CCC-EEEEEecCchhhHHHHhhhhhhccC
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLELS----NIK-DLIVVVEGADAALRVGGWISAAYVD   75 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~-gkpli~~~l~~l~~~----gi~-~v~iv~~~~~~~~~i~~~~~~~~~~   75 (456)
                      ++.+||||||.|+||    ....||+|+|++ |||||+|+++++...    |+. .++|+++.+. .+.+++++.+....
T Consensus        92 k~avViLAGG~GTRm----gs~~PK~l~~V~~gk~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t-~e~t~~~~~~~~~f  166 (488)
T 2i5k_A           92 KLAVLKLNGGLGTSM----GCVGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNT-DKDTEHLIKKYSAN  166 (488)
T ss_dssp             GEEEEEECCCBSGGG----TCCSBSTTSCCBTTBCHHHHHHHHHHHHHHHHTCCCEEEEECCTTT-HHHHHHHHGGGCSS
T ss_pred             CceEEEEcCCCcccC----CCCCCccccccCCCCcHHHHHHHHHHHhHHhcCCCccEEEEECCCC-HHHHHHHHHhcccc
Confidence            456799999999999    678999999999 999999999998776    533 3566665332 35677777653222


Q ss_pred             ccceEEEEcc------------------------CCcChHHHHHHH-----HhcC---CCCcEEEEcCCcccC-CChhHH
Q 012817           76 RLHVEVATVP------------------------EDVGTAGALRAI-----AHHL---TAKDVLVVSGDLVSD-VPPGAV  122 (456)
Q Consensus        76 ~~~i~~~~~~------------------------~~~gt~~al~~~-----~~~l---~~~~~lv~~~D~i~~-~~l~~~  122 (456)
                      ..++.++.|.                        .+.|+++++...     ++.+   ..++++|+++|.+.. .++. +
T Consensus       167 g~~i~~f~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDnL~~~~d~~-~  245 (488)
T 2i5k_A          167 RIRIRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGATVDLK-I  245 (488)
T ss_dssp             SCEEEEECCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTBSSCCCCHH-H
T ss_pred             CceEEEEEeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCcCCCcccHH-H
Confidence            2345555444                        457999988743     3333   357899999997665 5775 6


Q ss_pred             HHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCCcccEEEecCCCc-EEEEeecccccccccccchHHHhhccee
Q 012817          123 TAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQ-FLLHIATGAELEKDTRIRKSILRAVGQM  201 (456)
Q Consensus       123 l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~d~~~~-~l~~~~~~~~~~k~~~~~~~~~~~~~~~  201 (456)
                      +.+|.+.++++++.+.+..  +|              ...||.+..+ +++ .++.+.+.++.+.     .. +...   
T Consensus       246 L~~~~~~~a~~t~~v~~~~--~p--------------~~~yG~Iv~~-dG~~~iVE~~e~~~e~~-----~~-~~~~---  299 (488)
T 2i5k_A          246 LNHMIETGAEYIMELTDKT--RA--------------DVKGGTLISY-DGQVRLLEVAQVPKEHI-----DE-FKNI---  299 (488)
T ss_dssp             HHHHHHSCCSEEEEEEECC--GG--------------GSSSCEEEEE-TTEEEEECGGGSCTTSH-----HH-HTCT---
T ss_pred             HHHHHhcCCcEEEEEEEec--CC--------------CCceeEEEEE-CCcEEEEEeccCCHHHH-----hh-cccc---
Confidence            6889899999998877643  21              1248887665 344 2333322221110     00 0000   


Q ss_pred             EEecCCccceEEeechHHHHHHHhc
Q 012817          202 DIRADLMDAHMYAFNRSVLQEVLDQ  226 (456)
Q Consensus       202 ~~~~~~~~~giYi~~~~vl~~~~~~  226 (456)
                       ......|+|+|+|+.+.|..++.+
T Consensus       300 -~~~~~~Ntgi~~f~~~~L~~~l~~  323 (488)
T 2i5k_A          300 -RKFTNFNTNNLWINLKAVKRLIES  323 (488)
T ss_dssp             -TTCCEEEEEEEEEEHHHHHHHHHT
T ss_pred             -cccCEEEEEEEEEeHHHHHHHHhh
Confidence             123456999999999999888764

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.55  E-value=6.1e-14  Score=124.80  Aligned_cols=104  Identities=13%  Similarity=0.208  Sum_probs=82.5

Q ss_pred             CceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe----eeEECCCCEECCCcEEeCe------------EECCCCEECC
Q 012817          345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKVVNS------------VVMNHVTIGD  408 (456)
Q Consensus       345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~----~s~Ig~~~~ig~~~~i~~s------------~i~~~~~ig~  408 (456)
                      ...+++++.|++++.|++++.||++|.|++++.|.    +..||++|.|++++.|..+            +|+++|.||+
T Consensus        19 ~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~   98 (189)
T 3r1w_A           19 SPKLGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGH   98 (189)
T ss_dssp             CCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECT
T ss_pred             CCEECCCcEECCCCEEeeeeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECC
Confidence            44566666666666676777777777777777775    3599999999999999765            8999999999


Q ss_pred             CcEEcCeEECCCCEECCCcEe-cCeEECCCCEECCCcEEcC
Q 012817          409 GCSIQGSVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       409 ~~~i~~~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~~  448 (456)
                      +|.|.+++||++|.||++++| .++.||++++|++++.+..
T Consensus        99 ~~~i~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~  139 (189)
T 3r1w_A           99 QAMLHGCTIGNRVLIGMKSMIMDGAIVEDEVIVAAGATVSP  139 (189)
T ss_dssp             TCEEESCEECSSEEECTTCEECTTCEECSSCEECTTCEECT
T ss_pred             CCEEeCcEECCCcEECCCCEEcCCCEECCCCEEccCCEECC
Confidence            999999999999999999987 4777777777777777664

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.55  E-value=3.3e-14  Score=141.88  Aligned_cols=116  Identities=22%  Similarity=0.301  Sum_probs=100.2

Q ss_pred             cccCCCcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEc
Q 012817          334 NHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ  413 (456)
Q Consensus       334 ~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~  413 (456)
                      ..+.....+.++..|++++.|++++.|++++.||++|.|+++|.|++++|++++.|++++.|.+++|+++|.||.++.|.
T Consensus       251 ~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~  330 (401)
T 2ggo_A          251 AEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIA  330 (401)
T ss_dssp             CEECTTCEEESSEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTTCEEEESCEEESCEECTTCEECTTCEEC
T ss_pred             CEECCCCEEeCCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCCcEECCCceEcceEECCCcEECCCcEEc
Confidence            33333334456677788888888888888888999999999999989999999999999999999999999999999997


Q ss_pred             -------------------------CeEECCCCEECCCcEec-CeEECCCCEECCCcEEcCC
Q 012817          414 -------------------------GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGE  449 (456)
Q Consensus       414 -------------------------~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~~  449 (456)
                                               +++||++|.||++++|. ++.||++++|++++.+...
T Consensus       331 ~~~~~~~~~~~~i~~~~~~~~~~~~~v~Ig~~~~Ig~~~~I~~gv~Ig~~~vi~~gsvv~~~  392 (401)
T 2ggo_A          331 NLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTILPGVKIGAYARIYPGAVVNRD  392 (401)
T ss_dssp             CSCTTCSCCEEEETTEEEECSCSSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred             CcccCCCceeEEECCceEEecccccCcEECCCeEECCCcEEcCCcEECCCcEECCCCeEccc
Confidence                                     78999999999999875 8999999999999988764

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.54  E-value=1.6e-14  Score=130.28  Aligned_cols=103  Identities=13%  Similarity=0.218  Sum_probs=79.8

Q ss_pred             eeCCCCEeCCCcEECC--CCEECCCCEECCCCeEe-eeEECCCCEECCCcEEe----CeEECCCCEECCCcEE-------
Q 012817          347 IIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV----NSVVMNHVTIGDGCSI-------  412 (456)
Q Consensus       347 ~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i~----~s~i~~~~~ig~~~~i-------  412 (456)
                      .+++++.|++++.|..  ++.||++|.|+++|.|. ++.||++|.|++++.|.    +++|+++|.||++|.|       
T Consensus        34 ~ig~~~~I~~~~~i~~~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~  113 (205)
T 3vbi_A           34 SVGKNVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDDF  113 (205)
T ss_dssp             EECSSEEEBTTSEEESGGGEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEEESEECCC
T ss_pred             EECCCCEECCCeEEccCCeeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEEEeCCCCc
Confidence            4445555555555544  56666667777777766 58999999999999993    4889999999999998       


Q ss_pred             -------------------cCeEECCCCEECCCcEec-CeEECCCCEECCCcEEcCC
Q 012817          413 -------------------QGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGE  449 (456)
Q Consensus       413 -------------------~~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~~  449 (456)
                                         ++++||++|.||++++|. ++.||++++|++++.+...
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig~gsvV~~~  170 (205)
T 3vbi_A          114 SGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKES  170 (205)
T ss_dssp             SSSSCCSTTSCGGGCCCEECCEEECTTCEECTTCEECSSCEECTTCEECTTCEECSC
T ss_pred             ccccccCcccccccceeccCCEEECCCCEECCCCEEcCCCEECCCCEEcCCCEECCc
Confidence                               468999999999999875 8899999999998887653

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.54  E-value=8.6e-14  Score=129.18  Aligned_cols=69  Identities=20%  Similarity=0.250  Sum_probs=50.4

Q ss_pred             eEECCCCEECCCcEEeC-eEECCCCEECCCcEEcCeEECCCCEECCCcEecCeEECCCCEECCCcEEcCC
Q 012817          381 SVIGRHCRIGSNVKVVN-SVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGE  449 (456)
Q Consensus       381 s~Ig~~~~ig~~~~i~~-s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~~~~~~  449 (456)
                      ++||++|.||++|.|.+ ++|+++|.||.++.|.++.|+++|.|+++++|.++.|+++++|++++.+.+.
T Consensus       141 v~IG~~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~v~Ig~~~~IgagsvV~~~~I~~~~~v~~g~vv~~~  210 (247)
T 1qre_A          141 VYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAAIGVTIPDGRYIPAGMVVTSQ  210 (247)
T ss_dssp             EEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECTTCEECTTCEEESCEECTTBEECTTCEECSH
T ss_pred             eEECCCCEECCCCEEcCCcEECCCCEECCCCEEeceEECCCCEECCCCEECCeEeCCCCEECCCCEEecC
Confidence            67777777777777775 7777777777777775577777777777777766777777777777766543

>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}

Probab=99.53  E-value=1.5e-13  Score=126.70  Aligned_cols=112  Identities=21%  Similarity=0.259  Sum_probs=78.9

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |++.+||||||.|+||.    .. ||+|+|++|+|||+|+++.  ..++++++|+++. .    +.+ +..     ..+.
T Consensus        24 M~~~aiILAgG~s~Rm~----~~-~K~l~~i~gkpli~~~l~~--~~~~~~ivvv~~~-~----~~~-~~~-----~~v~   85 (236)
T 2px7_A           24 MEVSVLIPAAGNGLRLG----RG-PKAFLQVGGRTLLEWTLAA--FRDAAEVLVALPP-G----AEP-PKG-----LGAV   85 (236)
T ss_dssp             CCCEEEEECCC-----------C-CGGGCBCSSSBHHHHHHHH--TTTCSEEEEEECT-T----CCC-CTT-----CSCE
T ss_pred             CceEEEEEcCCCCccCC----CC-CCeEEEECCEEHHHHHHHh--cCCCCeEEEEeCH-H----HHH-hhc-----CCcE
Confidence            55669999999999994    34 9999999999999999999  6789999999984 1    111 111     1244


Q ss_pred             EEEccCCcChHHHHHHHHhcCCCCcEEEEcCCc--ccCCChhHHHHHHHhcCce
Q 012817           81 VATVPEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAV  132 (456)
Q Consensus        81 ~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~  132 (456)
                      ++  .+..++..+++.+++.+..+.+++++||.  +....++.+++.+.+.++.
T Consensus        86 ~~--~~~~~~~~~i~~al~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~  137 (236)
T 2px7_A           86 FL--EGGATRQASVARLLEAASLPLVLVHDVARPFVSRGLVARVLEAAQRSGAA  137 (236)
T ss_dssp             EE--ECCSSHHHHHHHHHHHCCSSEEEECCTTCCCCCHHHHHHHHHHHHHHSEE
T ss_pred             EE--eCCCchHHHHHHHHHHcCCCeEEEecCccccCCHHHHHHHHHHHHhcCCe
Confidence            43  33457889999998887656699999993  4455789999988765543

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=99.53  E-value=1.8e-13  Score=129.18  Aligned_cols=115  Identities=11%  Similarity=0.191  Sum_probs=83.2

Q ss_pred             cccCCCcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEee---------------eEECCCCEECCCcEEe-C
Q 012817          334 NHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR---------------SVIGRHCRIGSNVKVV-N  397 (456)
Q Consensus       334 ~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~---------------s~Ig~~~~ig~~~~i~-~  397 (456)
                      ..+.....+++++.|++++.|++++.|++++.||++|.|+++|.|++               ++||++|.|++++.|. +
T Consensus         9 ~~I~~~a~I~~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~   88 (273)
T 3fs8_A            9 AIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTENVIYGD   88 (273)
T ss_dssp             CEECTTCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEECTTCEEESS
T ss_pred             eEECCCcEECCCCEECCCcEECCCCEECCCCEECCCcEECCCcEeCCccccccccccccccceEECCCCEECCCCEEeCC
Confidence            33444444555666666666666677777777777777777777764               7888888888888886 8


Q ss_pred             eEECCCCEECCCcEEc-CeEECCCCEECCCcEec-CeEECCCCEECCCcEEcC
Q 012817          398 SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       398 s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~  448 (456)
                      ++|++++.||.++.|. +++|++++.|+.++.+. +++||+++.|++++.+..
T Consensus        89 ~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~~~~IG~~~~I~~~~~I~~  141 (273)
T 3fs8_A           89 TIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFVGE  141 (273)
T ss_dssp             CEECTTCEECSSCEECSSCEECSSCEECTTCEECSSCEECSSCEECTTCEECT
T ss_pred             CEECCCCEECCceEECCCCEECCCCEECccceeCCceEECCceEECCCCEECC
Confidence            8888888888888885 88888888888887774 566666666666665553

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=99.53  E-value=2.5e-13  Score=133.20  Aligned_cols=15  Identities=7%  Similarity=0.246  Sum_probs=6.7

Q ss_pred             eEECCCCEECCCcEe
Q 012817          415 SVICSNAQLQERVAL  429 (456)
Q Consensus       415 ~ii~~~~~I~~~~~i  429 (456)
                      ++|+++|.||++++|
T Consensus       223 v~IGd~v~IGa~~~I  237 (372)
T 3pmo_A          223 VTIGDDVEIGANTTI  237 (372)
T ss_dssp             EEECSSCEECTTCEE
T ss_pred             eEECCCCEECCCcEE
Confidence            444444444444443

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=99.53  E-value=1.8e-13  Score=128.26  Aligned_cols=50  Identities=30%  Similarity=0.482  Sum_probs=20.9

Q ss_pred             ceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-eeEECCCCEECCCcEE
Q 012817          346 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKV  395 (456)
Q Consensus       346 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i  395 (456)
                      +.+++++.|++++.|++++.||++|.|++++.|. ++.||++|.|++++.|
T Consensus        18 a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I   68 (262)
T 2qia_A           18 ASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASI   68 (262)
T ss_dssp             CEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEE
T ss_pred             CEECCCCEECCCCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEE
Confidence            3333333333333333334444444444444443 3444444444444444

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=99.53  E-value=1.5e-13  Score=130.20  Aligned_cols=69  Identities=16%  Similarity=0.152  Sum_probs=35.0

Q ss_pred             eeEECCCCEECCCcEEeC--------eEECCCCEECCCcEE-cCeEECCCCEECCCcEec-CeEECCCCEECCCcEEcC
Q 012817          380 RSVIGRHCRIGSNVKVVN--------SVVMNHVTIGDGCSI-QGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       380 ~s~Ig~~~~ig~~~~i~~--------s~i~~~~~ig~~~~i-~~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~  448 (456)
                      +++||++|.|+++|.|..        ++|+++|.|+.++.| .+|+|++++.|+.++.+. +++||++++|++++.+..
T Consensus       100 ~v~IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a~V~~  178 (283)
T 4eqy_A          100 RLVIGDRNTIREFTTIHTGTVQDAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQ  178 (283)
T ss_dssp             EEEECSSCEECTTEEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             eEEECCCcccCcceeEccceecCCCceEECCCcEECceeEEcCCcEECCCcEECCCceEcCCcEECCCeEEecCCEEcC
Confidence            345555555555555543        455555555555555 245555555555555443 244555554444444443

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=99.53  E-value=2.4e-13  Score=127.61  Aligned_cols=113  Identities=16%  Similarity=0.234  Sum_probs=63.1

Q ss_pred             cCCCcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeE--------------eeeEECCCCEECCCcEEeC----
Q 012817          336 LSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV--------------KRSVIGRHCRIGSNVKVVN----  397 (456)
Q Consensus       336 ~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i--------------~~s~Ig~~~~ig~~~~i~~----  397 (456)
                      +..+.++.+++.|++++.|++++.|.+++.||++|.|++++.|              .++.||++|.|++++.|..    
T Consensus        25 I~~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~  104 (266)
T 3r0s_A           25 IEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAK  104 (266)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEECTTCEECTTCEEECCCTT
T ss_pred             ECCCCEECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEECCCCEECCceEecCCccc
Confidence            3333344444555555555555555556666666666666666              3567777777777777753    


Q ss_pred             ----eEECCCCEECCCcEEc-CeEECCCCEECCCcEec-CeEECCCCEECCCcEEcC
Q 012817          398 ----SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       398 ----s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~  448 (456)
                          ++|+++|.|+.++.+. +|.|++++.|+.++.+. +++||++++|++++.+..
T Consensus       105 ~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~  161 (266)
T 3r0s_A          105 GDGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQ  161 (266)
T ss_dssp             TTSEEEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             CCccEEECCCceeCCcceEccccccCCCeEECCCceecCCeEECCCcEEccCCEECC
Confidence                5566666666555553 55555555555555543 244555554444444433

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=99.53  E-value=2.2e-13  Score=127.81  Aligned_cols=109  Identities=17%  Similarity=0.278  Sum_probs=71.4

Q ss_pred             cCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-eeEECCCCEECCCcEE--------------eCeEECCCCEE
Q 012817          342 SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKV--------------VNSVVMNHVTI  406 (456)
Q Consensus       342 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i--------------~~s~i~~~~~i  406 (456)
                      +++.+.|++++.|++.+.|++++.||++|.|++++.|. ++.||++|.|++++.|              .++.|+++|.|
T Consensus        13 I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG~~~~I   92 (266)
T 3r0s_A           13 IEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATI   92 (266)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEECTTCEE
T ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEECCCCEE
Confidence            33444445555555555555555555666666666665 4777777777777777              46677888888


Q ss_pred             CCCcEEcC--------eEECCCCEECCCcEe-cCeEECCCCEECCCcEEcCCe
Q 012817          407 GDGCSIQG--------SVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKGES  450 (456)
Q Consensus       407 g~~~~i~~--------~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~~~~  450 (456)
                      ++++.|..        ++||+++.|++++.+ ++|.||+++.+++++.+.+..
T Consensus        93 g~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v  145 (266)
T 3r0s_A           93 REFATINSGTAKGDGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHV  145 (266)
T ss_dssp             CTTCEEECCCTTTTSEEEECTTCEECTTCEECTTCEECSSCEECTTCEECTTC
T ss_pred             CCceEecCCcccCCccEEECCCceeCCcceEccccccCCCeEECCCceecCCe
Confidence            88877752        777777777777776 467777777776666665533

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=99.52  E-value=3.4e-13  Score=131.68  Aligned_cols=66  Identities=23%  Similarity=0.494  Sum_probs=28.6

Q ss_pred             eeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-eeEECCCCEECCCcEEe-CeEECCCCEECCCcEE
Q 012817          347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSI  412 (456)
Q Consensus       347 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i  412 (456)
                      .+++++.|++++.|++++.||++|.|+++|.|. ++.||++|.|++++.|. +++|+++|.|+.++.|
T Consensus       116 ~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~I  183 (357)
T 4e79_A          116 VISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGKDCFIDSYVTITGSSKLRDRVRIHSSTVI  183 (357)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEE
T ss_pred             EECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEecccEEEeEeeccCCeEE
Confidence            333333333333333333344444444444443 34444444444444443 4445555555554444

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.52  E-value=2.7e-13  Score=121.02  Aligned_cols=120  Identities=13%  Similarity=0.143  Sum_probs=75.3

Q ss_pred             ccCHHHHHHHhHhhhccccccCCCcccCCCceeCCCCEeCCCcEEC--CCCEECCCCEECCCCeEeeeEECCCCEECCCc
Q 012817          316 LNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVG--PHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNV  393 (456)
Q Consensus       316 i~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~--~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~  393 (456)
                      ++++..+++....+......        ....++|++.+++++.|+  +++.|+++|.|++++     .||++|.|++++
T Consensus        54 ig~~~~r~~~~~~l~~~~~~--------~~~~i~~~a~i~~~~~Ig~~~g~~I~~~~~I~~~~-----~IG~~~~I~~~~  120 (194)
T 3bfp_A           54 IGNNEIRKKIYQKISENGFK--------IVNLIHKSALISPSAIVEENAGILIMPYVVINAKA-----KIEKGVILNTSS  120 (194)
T ss_dssp             CCCHHHHHHHHHHHHTTTCC--------BCCEECTTCEECTTCEECTTSCCEECTTCEECTTC-----EECTTCEECTTC
T ss_pred             eCCHHHHHHHHHHHHHcCCc--------cccccCCeEEECCCceeCCCCCcEEcCCCEECCCC-----EECCCCEECCCC
Confidence            45555555555444432211        234566666666666666  666666666665544     666777777777


Q ss_pred             EEe-CeEECCCCEECCCcEEc-CeEECCCCEECCCcEe-cCeEECCCCEECCCcEEcC
Q 012817          394 KVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       394 ~i~-~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~~  448 (456)
                      .|. +|.|+++|.|+.++.|. +++|+++|.|+.+++| .+++||++++|++++.+..
T Consensus       121 ~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Igagsvv~~  178 (194)
T 3bfp_A          121 VIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVK  178 (194)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             EEcCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEECCCCEEcc
Confidence            766 67777777777777775 4777777777777765 3677777777777776543

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=99.52  E-value=4.1e-13  Score=130.49  Aligned_cols=69  Identities=20%  Similarity=0.355  Sum_probs=31.7

Q ss_pred             CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-eeEECCCCEECCCcEEe-CeEECCCCEECCCcEE
Q 012817          344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSI  412 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i  412 (456)
                      +.+.+++++.|++++.|++++.||++|.|+++|.|+ ++.||++|.|++++.|. ++.|+++|.|+.++.|
T Consensus       108 ~~a~ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~I  178 (341)
T 3eh0_A          108 ATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVV  178 (341)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECTTCEE
T ss_pred             CCcEECCCCEECCCcEECCCcEECCCcEECCCcEECCCCEECCCcEECCCcEECCCCEECCccEEcCCcEE
Confidence            333333444444444444444444444444444442 34445555555555553 4555555555555554

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=99.52  E-value=2.6e-13  Score=127.50  Aligned_cols=50  Identities=18%  Similarity=0.359  Sum_probs=20.6

Q ss_pred             ceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-eeEECCCCEECCCcEE
Q 012817          346 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKV  395 (456)
Q Consensus       346 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i  395 (456)
                      +.|++++.|++++.|++++.||++|.|+++|.|. ++.||++|.|++++.|
T Consensus        14 a~Ig~~~~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~I   64 (270)
T 1j2z_A           14 AEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVL   64 (270)
T ss_dssp             SEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEE
T ss_pred             CEECCCCEECCCCEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEE
Confidence            3333333333333333344444444444444443 3444444444444444

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.52  E-value=1.7e-13  Score=127.14  Aligned_cols=104  Identities=13%  Similarity=0.269  Sum_probs=88.9

Q ss_pred             CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEee-----eEECCCCEECCCcEEe----------------------
Q 012817          344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-----SVIGRHCRIGSNVKVV----------------------  396 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~-----s~Ig~~~~ig~~~~i~----------------------  396 (456)
                      ....+++++.|++++.|.+++.||++|.|+++|.|..     .+||++|.|+++|.|.                      
T Consensus        58 ~~~~I~~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~  137 (247)
T 1qre_A           58 SAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGK  137 (247)
T ss_dssp             CCCEECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTE
T ss_pred             CCcEECCCcEECCCCEEeCCcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccceeeccCc
Confidence            4556777777777777777788888888888888764     3899999999999997                      


Q ss_pred             --CeEECCCCEECCCcEEcC-eEECCCCEECCCcEecCeEECCCCEECCCcEEc
Q 012817          397 --NSVVMNHVTIGDGCSIQG-SVICSNAQLQERVALKDCQVGQGYVVSAGCEYK  447 (456)
Q Consensus       397 --~s~i~~~~~ig~~~~i~~-~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~~~~  447 (456)
                        +++|+++|.||++|.|.+ ++|+++|.||++++|.++.||++++|++++.+.
T Consensus       138 ~~~v~IG~~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~v~Ig~~~~IgagsvV~  191 (247)
T 1qre_A          138 EYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAAI  191 (247)
T ss_dssp             EESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECTTCEECTTCEEE
T ss_pred             cCceEECCCCEECCCCEEcCCcEECCCCEECCCCEEeceEECCCCEECCCCEEC
Confidence              378999999999999986 999999999999988669999999999998883

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=99.52  E-value=2.4e-13  Score=127.67  Aligned_cols=104  Identities=15%  Similarity=0.210  Sum_probs=50.2

Q ss_pred             CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeE-------------eeeEECCCCEECCCcEEe--------CeEECC
Q 012817          344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV-------------KRSVIGRHCRIGSNVKVV--------NSVVMN  402 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i-------------~~s~Ig~~~~ig~~~~i~--------~s~i~~  402 (456)
                      +++.|++++.|++++.|++++.||++|.|++++.|             .++.||++|.|++++.|.        +++|++
T Consensus        36 ~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~~g~~~~~~~~~IG~  115 (265)
T 4e6u_A           36 PQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIGNNNLIREHCSLHRGTVQDNALTKIGS  115 (265)
T ss_dssp             TTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECSSCEECTTCEEECCCTTTTSEEEECS
T ss_pred             CCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeEEECCCeEECCceEECcccccCCCceEEcc
Confidence            33333444444444444444445555555555555             245666666666666664        244555


Q ss_pred             CCEECCCcEEc-CeEECCCCEECCCcEec-CeEECCCCEECCCcEEc
Q 012817          403 HVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK  447 (456)
Q Consensus       403 ~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~  447 (456)
                      +|.|+.++.|. +|+|++++.|+.++.+. +++||++++|++++.+.
T Consensus       116 ~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~  162 (265)
T 4e6u_A          116 HNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIH  162 (265)
T ss_dssp             SCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEEC
T ss_pred             CcEEeeeeEEcccEEECCCcEEcCCcEECCCcEECCCeEEcCCCEEC
Confidence            55555555442 45555554444444443 24444444444444433

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=99.51  E-value=2.2e-13  Score=129.01  Aligned_cols=83  Identities=12%  Similarity=0.199  Sum_probs=56.6

Q ss_pred             ECCCCEECCCCeEee--------eEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-CeEECCCCEECCCcEec-CeEE
Q 012817          366 LGEGSQMGDKCSVKR--------SVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQV  434 (456)
Q Consensus       366 i~~~~~I~~~~~i~~--------s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-~~~i  434 (456)
                      ||++|.|+++|.|.+        +.||++|.|+.++.|. +|+|+++|.|+.++.+. ++.|+++|.||.+++|. ++.|
T Consensus       103 IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~I  182 (283)
T 4eqy_A          103 IGDRNTIREFTTIHTGTVQDAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQYVRI  182 (283)
T ss_dssp             ECSSCEECTTEEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             ECCCcccCcceeEccceecCCCceEECCCcEECceeEEcCCcEECCCcEECCCceEcCCcEECCCeEEecCCEEcCCeEE
Confidence            355555556666653        6777777777777774 67777777777777775 57777777777777664 6777


Q ss_pred             CCCCEECCCcEEcC
Q 012817          435 GQGYVVSAGCEYKG  448 (456)
Q Consensus       435 ~~~~~v~~~~~~~~  448 (456)
                      |++++|++++.+..
T Consensus       183 g~~~vvg~~s~V~~  196 (283)
T 4eqy_A          183 GAHSMLGGASALVQ  196 (283)
T ss_dssp             CTTCEECTTCEECS
T ss_pred             CCCcEECCCCeEec
Confidence            77777777766654

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=99.51  E-value=3.3e-13  Score=126.17  Aligned_cols=50  Identities=18%  Similarity=0.197  Sum_probs=23.7

Q ss_pred             eEECCCCEECCCcEEc-CeEECCCCEECCCcEec-CeEECCCCEECCCcEEc
Q 012817          398 SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK  447 (456)
Q Consensus       398 s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~  447 (456)
                      |.|++++.++.++.+. ++.|+++|.||.+++|. ++.||++++|++++.+.
T Consensus       122 ~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~~Vg~~s~V~  173 (259)
T 3hsq_A          122 CILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQFCFVGDYSMVAGLAKVV  173 (259)
T ss_dssp             CEECSSCEECTTCEECTTCEECSSCEECSSEEECTTCEECTTCEECSSEEEC
T ss_pred             cEECCccEEcCCceECCccEECCCcEEeCCCEECCCCEECCCCEECCCCEEc
Confidence            3333333333333332 34455555555555443 45555555555555543

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.50  E-value=1.2e-13  Score=138.94  Aligned_cols=102  Identities=14%  Similarity=0.179  Sum_probs=85.3

Q ss_pred             ceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECC
Q 012817          346 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQE  425 (456)
Q Consensus       346 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~  425 (456)
                      ..+++++.|++++.+.+++.||++|.|+++|.|++++||++|.|+++|+|.+|+|+++|.||+++.|.+++||++|.||+
T Consensus       274 ~~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I~~v~IG~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~gv~IGd~v~IG~  353 (496)
T 3c8v_A          274 AGSASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERNCVTAHGGKIINAHLGDMIFTGF  353 (496)
T ss_dssp             --CCTTCEECTTSEEESSCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEEEESCEECTTCEEESEEEEETCEECT
T ss_pred             cccCCCcEECCCcEEeCCeEECCCCEECCCcEEeceEecCCCEECCCceEeceEeCCCCEECCCcEEcCceECCCcEECC
Confidence            44566666666676767778888888888888888999999999999999999999999999999999999999999999


Q ss_pred             CcEec-C----eEECCCCEECCCcEEc
Q 012817          426 RVALK-D----CQVGQGYVVSAGCEYK  447 (456)
Q Consensus       426 ~~~i~-~----~~i~~~~~v~~~~~~~  447 (456)
                      +++|. +    ++||++++|++++.+.
T Consensus       354 ~a~I~~~~~~~v~IG~~a~IGagsvV~  380 (496)
T 3c8v_A          354 NSFLQGSESSPLKIGDGCVVMPHTIID  380 (496)
T ss_dssp             TCEEECCSSSCEEECTTCEECTTCEEE
T ss_pred             CCEEeCCCCcceEECCCCEECCCCEEe
Confidence            99886 4    5899999999988887

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=99.50  E-value=3.8e-13  Score=126.23  Aligned_cols=86  Identities=13%  Similarity=0.261  Sum_probs=67.1

Q ss_pred             CCEECCCCEECCCCeEe--------eeEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-CeEECCCCEECCCcEec-C
Q 012817          363 HCMLGEGSQMGDKCSVK--------RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-D  431 (456)
Q Consensus       363 ~~~i~~~~~I~~~~~i~--------~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-~  431 (456)
                      ++.||++|.|++++.|.        ++.||++|.|+.++.|. +++|+++|.|+.++.+. +++|+++|.||.+++|. +
T Consensus        85 ~~~IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~  164 (265)
T 4e6u_A           85 WLEIGNNNLIREHCSLHRGTVQDNALTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQF  164 (265)
T ss_dssp             EEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTT
T ss_pred             eEEECCCeEECCceEECcccccCCCceEEccCcEEeeeeEEcccEEECCCcEEcCCcEECCCcEECCCeEEcCCCEECCC
Confidence            44556677777777776        47888888888888885 78888888888888886 58888888888888764 6


Q ss_pred             eEECCCCEECCCcEEcC
Q 012817          432 CQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       432 ~~i~~~~~v~~~~~~~~  448 (456)
                      +.||++++|++++.+..
T Consensus       165 v~Ig~~~~i~~~svV~~  181 (265)
T 4e6u_A          165 CKIDSYSMIGGASLILK  181 (265)
T ss_dssp             CEECTTCEECTTCEECS
T ss_pred             cEECCCCEEcCCCEEcc
Confidence            88888888888887754

>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}

Probab=99.50  E-value=4.5e-14  Score=126.56  Aligned_cols=114  Identities=19%  Similarity=0.270  Sum_probs=86.1

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |++.+||||||.|+||    .  .||+|+|++|+|||+|+++.+..+   +++|++++..  +.+.+++.      .++ 
T Consensus         1 M~~~~iIlAgG~g~Rm----g--~~K~l~~i~g~pll~~~l~~l~~~---~ivvv~~~~~--~~~~~~~~------~~~-   62 (197)
T 3d5n_A            1 MNIGVIILAAGEGKRF----G--GDKLLAKIDNTPIIMRTIRIYGDL---EKIIIVGKYV--NEMLPLLM------DQI-   62 (197)
T ss_dssp             CCEEEEEECSCCTTCC----C--SSGGGSBSSSSBHHHHHHHHTTTS---BCCEEECTTH--HHHGGGCT------TSC-
T ss_pred             CceEEEEECCcCcccC----C--CCeeeCEeCceEHHHHHHHHHHhC---CEEEEECCCH--HHHHHHhc------CCE-
Confidence            8899999999999999    2  499999999999999999999876   8888887542  34544432      124 


Q ss_pred             EEEccC-CcChHHHHHHHHhcCCC-CcEEEEcCCc--ccCCChhHHHHHHHhcCceE
Q 012817           81 VATVPE-DVGTAGALRAIAHHLTA-KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVV  133 (456)
Q Consensus        81 ~~~~~~-~~gt~~al~~~~~~l~~-~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~  133 (456)
                      ++..+. ..|+.++++.+++.+.+ +.+++++||.  +....++.+++.+ +.++++
T Consensus        63 ~v~~~~~~~G~~~si~~al~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~  118 (197)
T 3d5n_A           63 VIYNPFWNEGISTSLKLGLRFFKDYDAVLVALGDMPFVTKEDVNKIINTF-KPNCKA  118 (197)
T ss_dssp             EEECTTGGGCHHHHHHHHHHHTTTSSEEEEEETTCCCSCHHHHHHHHHTC-CTTCSE
T ss_pred             EEECCCCCCCHHHHHHHHHHhhccCCcEEEEeCCccccCHHHHHHHHHHh-cCCCcE
Confidence            443333 36999999999888864 5799999995  4455688888876 444443

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=99.50  E-value=6.1e-13  Score=124.42  Aligned_cols=111  Identities=14%  Similarity=0.166  Sum_probs=62.6

Q ss_pred             CcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeE-------------e-eeEECCCCEECCCcEEe-------C
Q 012817          339 YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV-------------K-RSVIGRHCRIGSNVKVV-------N  397 (456)
Q Consensus       339 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i-------------~-~s~Ig~~~~ig~~~~i~-------~  397 (456)
                      +..+.++..|++++.|++++.|.+++.||++|.|++++.|             . ++.||++|.|++++.|.       .
T Consensus        24 ~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~  103 (259)
T 3hsq_A           24 YSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGDHNIFREYSNIHKGTKEDSP  103 (259)
T ss_dssp             TCEECSSCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEECSSCEECTTCEEECCSBTTBC
T ss_pred             CCEECCCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEECCCcEECCCCEECCCccCCCc
Confidence            3333444444444455555555555555666666666666             2 36677777777777776       4


Q ss_pred             eEECCCCEECCCcEEc-CeEECCCCEECCCcEec-CeEECCCCEECCCcEEcCC
Q 012817          398 SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGE  449 (456)
Q Consensus       398 s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~~  449 (456)
                      +.|++++.|+.++.|. +|+|++++.|+.++.+. +++||++++|++++.+...
T Consensus       104 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~  157 (259)
T 3hsq_A          104 TVIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQF  157 (259)
T ss_dssp             EEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECSSEEECTT
T ss_pred             EEECCCcEEcCCcEECCCcEECCccEEcCCceECCccEECCCcEEeCCCEECCC
Confidence            5566666666666554 56666665555555553 4555555555555554443

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.49  E-value=2.6e-14  Score=137.23  Aligned_cols=137  Identities=18%  Similarity=0.247  Sum_probs=98.3

Q ss_pred             hhcccCHHHHHHHhHhhhccc------cccCCCcccCC-CceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECC
Q 012817          313 CVRLNSIQAFMDINRDVIGEA------NHLSGYNFSAQ-NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGR  385 (456)
Q Consensus       313 ~~~i~~~~~y~~~~~~~l~~~------~~~~~~~~~~~-~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~  385 (456)
                      ..|+..+++|-++....+...      .......++.. .+.+++++.|++++.|++++.|+++|.|+++|.|.+|.|++
T Consensus        26 l~ri~al~~f~~v~~g~lgg~i~~e~nl~~~~~~~I~~~~a~I~~~a~I~~~~~I~g~~~Ig~~~~Ig~~~~I~~~~Ig~  105 (334)
T 2pig_A           26 LRQVIAVTDFNDVKAGTSGGWVDADNVLSQQGDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISD  105 (334)
T ss_dssp             EEEEEESSCBTTBCTTCEEEEESSTTSBCSSSSCEECCTTCEEETTCEECTTCEEESSCEEESSCEECTTCEEESCEEES
T ss_pred             EEEEEEeeccccccCCccCCeEeccCCcccCCceEEcCCCeEEcCCcEECCCcEEeeeeeECCCcEECCCCEEEeEEEcC
Confidence            456777777766666654432      12233446666 77778888888999999999999999999999999999999


Q ss_pred             CCEECCCcEEeCeEECCCCEECCCc----------------------------EEcCeEECCCCEECCCcEecCeEECCC
Q 012817          386 HCRIGSNVKVVNSVVMNHVTIGDGC----------------------------SIQGSVICSNAQLQERVALKDCQVGQG  437 (456)
Q Consensus       386 ~~~ig~~~~i~~s~i~~~~~ig~~~----------------------------~i~~~ii~~~~~I~~~~~i~~~~i~~~  437 (456)
                      ++.|+++++|.+|+|+++|.|+.++                            +|.+++|+.+|.|+.++.|.+++|+.+
T Consensus       106 ~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~I~~~~~~~~~~~~g~~I~~~a~I~~s~I~~g~~I~~~a~I~~svI~~~  185 (334)
T 2pig_A          106 GARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATITHAFIEHR  185 (334)
T ss_dssp             SCEECTTCEEESCEEESSEEECTTCEEESSCEEEC--------CCCEEECTTCEEESCEEETTCEECTTCEEESEEECTT
T ss_pred             CCEEeCCcEEeccEEcCCeEEecCCEEeCCEEEeecceeecccCCCeEECCCCEEeccEEcCCCEEcCCeEEeCcEEcCC
Confidence            9999999999887766655544444                            444455666666666666666677777


Q ss_pred             CEECCCcEEcCC
Q 012817          438 YVVSAGCEYKGE  449 (456)
Q Consensus       438 ~~v~~~~~~~~~  449 (456)
                      +.|++++.+.+.
T Consensus       186 a~I~~~a~V~~~  197 (334)
T 2pig_A          186 AEVFDFALIEGD  197 (334)
T ss_dssp             CEECTTCEEECC
T ss_pred             CEECCCcEECCc
Confidence            777777666554

>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*

Probab=99.49  E-value=5.9e-13  Score=134.60  Aligned_cols=194  Identities=14%  Similarity=0.107  Sum_probs=126.6

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCccccccc---CCcchHHHHHHHHHH--------CC----CCEEEEEecCchhhHHHH
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPV---ANRPVLSYVLEQLEL--------SN----IKDLIVVVEGADAALRVG   66 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi---~gkpli~~~l~~l~~--------~g----i~~v~iv~~~~~~~~~i~   66 (456)
                      ++.+||||||.|+||    +...||+|+|+   .|+|+|++.++++.+        .|    +..+++.+...  .+.+.
T Consensus       102 kvavViLAGG~GTRL----g~~~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t--~e~t~  175 (505)
T 1jv1_A          102 KVAVLLLAGGQGTRL----GVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRT--MESTK  175 (505)
T ss_dssp             CEEEEEECCCCCCTT----SCSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTT--HHHHH
T ss_pred             ceEEEEEcCCccccC----CCCCCCccceeecCCCCcHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCC--HHHHH
Confidence            578999999999999    67899999999   799999999999866        25    55555554432  34566


Q ss_pred             hhhhhhccCcc---ceEEEEc---------------------cCCcChHHHHHHHHh-----cC---CCCcEEEEcCCcc
Q 012817           67 GWISAAYVDRL---HVEVATV---------------------PEDVGTAGALRAIAH-----HL---TAKDVLVVSGDLV  114 (456)
Q Consensus        67 ~~~~~~~~~~~---~i~~~~~---------------------~~~~gt~~al~~~~~-----~l---~~~~~lv~~~D~i  114 (456)
                      +|+.+.....+   ++.++.+                     ..+.|+++.+..+..     .+   ..++++|.++|.+
T Consensus       176 ~~f~~~~~fGl~~~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~Dn~  255 (505)
T 1jv1_A          176 EFFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNI  255 (505)
T ss_dssp             HHHHHTGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBT
T ss_pred             HHHHhhhhcCCCcCceEEEEecceEEEcCCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEECCcc
Confidence            66654211111   2444432                     235788888765532     11   2478999999975


Q ss_pred             -cCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCCcccEEEecCCCc-EEEEeecccccccccccch
Q 012817          115 -SDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQ-FLLHIATGAELEKDTRIRK  192 (456)
Q Consensus       115 -~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~d~~~~-~l~~~~~~~~~~k~~~~~~  192 (456)
                       ...+...++.+|...++++++.+.+...                .+..+|++..+ +++ .++.+.+.+.     ... 
T Consensus       256 L~~~~d~~~lg~~~~~~~~~~~~v~~k~~----------------~~e~~Gvl~~~-dg~~~vvEy~E~p~-----~~~-  312 (505)
T 1jv1_A          256 LVKVADPRFIGFCIQKGADCGAKVVEKTN----------------PTEPVGVVCRV-DGVYQVVEYSEISL-----ATA-  312 (505)
T ss_dssp             TCCTTCHHHHHHHHHTTCSEEEEEEECCS----------------TTCSCCEEEEE-TTEEEEECGGGSCH-----HHH-
T ss_pred             ccccchHHHHHHHHHcCCCEEEEEEEccC----------------CccCcceEEEE-CCeEEEEEEeeCCH-----HHh-
Confidence             7777888999999999999987765221                14568888775 343 2333332111     000 


Q ss_pred             HHHhhcceeEEecCCccceEEeechHHHHHHHhc
Q 012817          193 SILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ  226 (456)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~  226 (456)
                        ....+.-....+..|+|+|+|+.++|..+..+
T Consensus       313 --~~~~~~g~~~~~~~N~~~~~f~l~~L~~i~~~  344 (505)
T 1jv1_A          313 --QKRSSDGRLLFNAGNIANHFFTVPFLRDVVNV  344 (505)
T ss_dssp             --HCBCTTSSBSSCEEEEEEEEEEHHHHHHHHHT
T ss_pred             --hhcccccccccceeeEEEEEecHHHHHHHHHh
Confidence              00000011234678999999999999887653

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.48  E-value=4.6e-13  Score=122.12  Aligned_cols=97  Identities=21%  Similarity=0.277  Sum_probs=56.7

Q ss_pred             ceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-CeEECCCCEE
Q 012817          346 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQL  423 (456)
Q Consensus       346 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~~ii~~~~~I  423 (456)
                      .+++|.+.+.+++.++++|.|++++.|++++     .||++|.|+.++.|. +|+|+++|.|+.++.|. +++|+++|.|
T Consensus       100 ~~i~~~a~i~~~v~IG~g~~I~~~~~i~~~~-----~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~I  174 (220)
T 4ea9_A          100 NAIHPSAVVSPSVRLGEGVAVMAGVAINADS-----WIGDLAIINTGAVVDHDCRLGAACHLGPASALAGGVSVGERAFL  174 (220)
T ss_dssp             CEECTTCEECTTCEECSSCEECTTCEECTTC-----EECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEE
T ss_pred             CcCCCCCEECCCCEECCCCEEcCCCEECCCC-----EECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEE
Confidence            3445555555555555555555555555443     555555555555555 55666666666666665 3666666666


Q ss_pred             CCCcEec-CeEECCCCEECCCcEEc
Q 012817          424 QERVALK-DCQVGQGYVVSAGCEYK  447 (456)
Q Consensus       424 ~~~~~i~-~~~i~~~~~v~~~~~~~  447 (456)
                      |++++|. ++.||++++|++++.+.
T Consensus       175 g~~~~i~~~~~Ig~~~~igagsvv~  199 (220)
T 4ea9_A          175 GVGARVIPGVTIGADTIVGAGGVVV  199 (220)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEEC
T ss_pred             CCCCEEcCCcEECCCCEECCCCEEc
Confidence            6666553 56666666666666654

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=99.47  E-value=9.9e-13  Score=129.00  Aligned_cols=12  Identities=8%  Similarity=-0.092  Sum_probs=7.3

Q ss_pred             cceEEeechHHH
Q 012817          209 DAHMYAFNRSVL  220 (456)
Q Consensus       209 ~~giYi~~~~vl  220 (456)
                      .++..+++++.+
T Consensus        77 ~a~~~i~~~~~~   88 (372)
T 3pmo_A           77 RAGAVLLTAADA   88 (372)
T ss_dssp             CCSEEEECHHHH
T ss_pred             CCcEEEEcHHHH
Confidence            346777776644

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.47  E-value=3.5e-13  Score=118.08  Aligned_cols=103  Identities=13%  Similarity=0.238  Sum_probs=83.9

Q ss_pred             CCceeCCCCEeCCCcEECCC---CEECCCCEECCCCeEe-----eeEECCCCEECCCcEEeCeEECCCCEECCCcEEc-C
Q 012817          344 QNNIIHPSAELGSKTTVGPH---CMLGEGSQMGDKCSVK-----RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-G  414 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~~---~~i~~~~~I~~~~~i~-----~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~  414 (456)
                      ++..|++++.|++++.|..+   +.||++|.|+++|.|.     +++||++|.|++++.|.+++|+++|.||.++.|. +
T Consensus        29 ~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~~  108 (173)
T 1xhd_A           29 GDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKDALIGMGSIILDG  108 (173)
T ss_dssp             EEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECTTCEECTTCEECTT
T ss_pred             CCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEeCCEECCCCEEcCCCEEcCC
Confidence            34455555555555555443   6788999999999998     7999999999999999999999999999999996 7


Q ss_pred             eEECCCCEECCCcEec-CeEECCCCEE-CCCcEE
Q 012817          415 SVICSNAQLQERVALK-DCQVGQGYVV-SAGCEY  446 (456)
Q Consensus       415 ~ii~~~~~I~~~~~i~-~~~i~~~~~v-~~~~~~  446 (456)
                      +.|++++.|++++++. +..|++++++ |..+.+
T Consensus       109 ~~Ig~~~~Ig~~s~V~~~~~i~~~~vv~G~pa~~  142 (173)
T 1xhd_A          109 AEIGEGAFIGAGSLVSQGKKIPPNTLAFGRPAKV  142 (173)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTEEEEETTEEE
T ss_pred             CEECCCCEECCCCEECCCcEeCCCCEEECCCCEE
Confidence            9999999999999886 5788888887 555543

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=99.47  E-value=9.1e-13  Score=126.12  Aligned_cols=15  Identities=33%  Similarity=0.454  Sum_probs=6.3

Q ss_pred             eEECCCCEECCCcEE
Q 012817          381 SVIGRHCRIGSNVKV  395 (456)
Q Consensus       381 s~Ig~~~~ig~~~~i  395 (456)
                      ++||++|.|++++.|
T Consensus        78 ~~IG~~~~Ig~~a~I   92 (305)
T 3t57_A           78 TFIGCNNIIGHHAVV   92 (305)
T ss_dssp             EEECSSCEECTTCEE
T ss_pred             eEECCceEECCccEe
Confidence            344444444444443

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=99.47  E-value=1e-12  Score=127.69  Aligned_cols=68  Identities=22%  Similarity=0.435  Sum_probs=30.6

Q ss_pred             eEECCCCEECCCcEEe-----CeEECCCCEECCCcEEc-CeEECCCCEECCCcEec-CeEECCCCEECCCcEEcC
Q 012817          381 SVIGRHCRIGSNVKVV-----NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       381 s~Ig~~~~ig~~~~i~-----~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~  448 (456)
                      ++||++|.||.++.|.     +++|++++.|+.++.|+ ++.|+++|.|+.++.+. +++||++++|++++.+.+
T Consensus       201 v~IGd~v~Ig~~~~I~~~~~~~~~Ig~~~~I~~~v~I~~~v~IG~~~~i~~~~~i~g~v~IG~~~~Ig~~s~V~~  275 (341)
T 3eh0_A          201 VIIGDRVEIGACTTIDRGALDDTIIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVING  275 (341)
T ss_dssp             EEECSSCEECTTCEEECCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECS
T ss_pred             EEECCCcEECCccEeeccccCceEeccceEECCCCEEeCCcEECCCCEECCCCEECCCcEECCCcEEcCCCEECC
Confidence            4555555555555552     33344444444444442 44444444444444332 344555555554444443

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.46  E-value=1.1e-12  Score=117.00  Aligned_cols=32  Identities=13%  Similarity=0.190  Sum_probs=15.6

Q ss_pred             CEECCCcEec-CeEECCCCEECCCcEEcCCeee
Q 012817          421 AQLQERVALK-DCQVGQGYVVSAGCEYKGESLA  452 (456)
Q Consensus       421 ~~I~~~~~i~-~~~i~~~~~v~~~~~~~~~~~~  452 (456)
                      +.||+++.|. +++|.+++.|+.++.+....++
T Consensus       103 ~~Ig~~v~IG~~~~I~~g~~Ig~~~~IgagsvV  135 (192)
T 3mqg_A          103 TIVRQGATLGANCTVVCGATIGRYAFVGAGAVV  135 (192)
T ss_dssp             EEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             cEECCCcEECCCCEECCCCEECCCCEEcCCCEE
Confidence            3444444443 4555555555555555444443

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=99.46  E-value=9.4e-13  Score=123.71  Aligned_cols=67  Identities=15%  Similarity=0.292  Sum_probs=36.3

Q ss_pred             eEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-CeEECCCCEECCCcEec-CeEECCCCEECCCcEEc
Q 012817          381 SVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK  447 (456)
Q Consensus       381 s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~  447 (456)
                      +.||++|.|+.++.|. +|.|+++|.|+.++.+. ++.|++++.||.++.|. ++.||++++|++++.+.
T Consensus       105 ~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~IG~~a~Ig~~s~V~  174 (270)
T 1j2z_A          105 TLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALG  174 (270)
T ss_dssp             EEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             EEECCCcEECcccccCCCcEECCCcEEcCCccccCccEECCCeEEecCCEECCCcEeCCceEEecCcEec
Confidence            3444444444444443 44444444444444443 45566666666666553 56777777777776653

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.46  E-value=3.3e-13  Score=118.21  Aligned_cols=102  Identities=19%  Similarity=0.226  Sum_probs=83.1

Q ss_pred             CceeCCCCEeCCCcEECCC---CEECCCCEECCCCeEe-----eeEECCCCEECCCcEEeCeEECCCCEECCCcEEc-Ce
Q 012817          345 NNIIHPSAELGSKTTVGPH---CMLGEGSQMGDKCSVK-----RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GS  415 (456)
Q Consensus       345 ~~~i~~~~~i~~~~~i~~~---~~i~~~~~I~~~~~i~-----~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~  415 (456)
                      +..|++++.|++++.|..+   +.||++|.|+++|.|.     +++||++|.|++++.|.+++|+++|.||.++.|. ++
T Consensus        28 ~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~  107 (173)
T 1v3w_A           28 DVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGA  107 (173)
T ss_dssp             EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECSSEEECTTCEECTTC
T ss_pred             CEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECCCEECCCCEECCCCEEeCCC
Confidence            4445555555555555443   6788888888898887     5899999999999999999999999999999986 89


Q ss_pred             EECCCCEECCCcEec-CeEECCCCEE-CCCcEE
Q 012817          416 VICSNAQLQERVALK-DCQVGQGYVV-SAGCEY  446 (456)
Q Consensus       416 ii~~~~~I~~~~~i~-~~~i~~~~~v-~~~~~~  446 (456)
                      .|++++.|++++++. ++.|++++++ |..+.+
T Consensus       108 ~Ig~~~~Ig~~s~V~~~~~i~~~~~v~G~pa~~  140 (173)
T 1v3w_A          108 KIGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKV  140 (173)
T ss_dssp             EECSSEEECTTCEECTTCEECTTEEEEETTEEE
T ss_pred             EECCCCEECCCCEECCCcEeCCCcEEECcCCEE
Confidence            999999999999886 5888999888 555543

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.46  E-value=1.3e-12  Score=116.63  Aligned_cols=96  Identities=23%  Similarity=0.392  Sum_probs=60.1

Q ss_pred             CCceeCCCCEeC--CCcEECCCCEECCCCEECCCCeEe-eeEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-CeEEC
Q 012817          344 QNNIIHPSAELG--SKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVIC  418 (456)
Q Consensus       344 ~~~~i~~~~~i~--~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~~ii~  418 (456)
                      +.+.+++++.|+  +++.|++++.|++++.||++|.|. +++|+++|.||++|.|. ++.|.++++||++|+|+ +++|.
T Consensus        80 ~~a~i~~~~~Ig~~~g~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~  159 (194)
T 3bfp_A           80 KSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVL  159 (194)
T ss_dssp             TTCEECTTCEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             CeEEECCCceeCCCCCcEEcCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEEC
Confidence            445555666666  666666666666666666666664 35666777777777776 56666677777777765 66666


Q ss_pred             CCCEECCCcEecCeEECCCCEECCCc
Q 012817          419 SNAQLQERVALKDCQVGQGYVVSAGC  444 (456)
Q Consensus       419 ~~~~I~~~~~i~~~~i~~~~~v~~~~  444 (456)
                      ++++|++     +++||++++|..+.
T Consensus       160 ~~~~Ig~-----~~~Igagsvv~~~v  180 (194)
T 3bfp_A          160 PNLSLAD-----DSILGGGATLVKNQ  180 (194)
T ss_dssp             TTCEECT-----TCEECTTCEECSCB
T ss_pred             CCCEECC-----CCEECCCCEEcccc
Confidence            6666663     44555555555443

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=99.46  E-value=1.2e-12  Score=127.92  Aligned_cols=68  Identities=25%  Similarity=0.495  Sum_probs=30.5

Q ss_pred             eEECCCCEECCCcEE-----eCeEECCCCEECCCcEEc-CeEECCCCEECCCcEec-CeEECCCCEECCCcEEcC
Q 012817          381 SVIGRHCRIGSNVKV-----VNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       381 s~Ig~~~~ig~~~~i-----~~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~  448 (456)
                      ++||++|.||.++.|     .+++|++++.|+.++.|. ++.|+++|.|+.++.+. +++||++++|++++.+.+
T Consensus       206 v~IGd~v~IG~~~~I~~g~~~~t~Ig~~~~I~~~v~I~~~v~IG~~~~i~~~~~i~~~v~IG~~~~Ig~~s~V~~  280 (357)
T 4e79_A          206 VLIGNDVRIGSNCSIDRGALDNTILEDGVIIDNLVQIAHNVHIGSNTAIAAKCGIAGSTKIGKNCILAGACGVAG  280 (357)
T ss_dssp             EEECTTCEECTTCEECCCSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             EEEcCCcEEccccEEeccccCCccccCCcccCCCcccCCCeEECCCCEECCCCEECCCcEECCCCEECcCCEECC
Confidence            344444444444444     233344444443333332 34444444444444332 355555555555555544

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=99.45  E-value=1.6e-12  Score=121.89  Aligned_cols=109  Identities=18%  Similarity=0.174  Sum_probs=58.5

Q ss_pred             cccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-------------eeEECCCCEECCCcEEeC--------e
Q 012817          340 NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-------------RSVIGRHCRIGSNVKVVN--------S  398 (456)
Q Consensus       340 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-------------~s~Ig~~~~ig~~~~i~~--------s  398 (456)
                      ..+..+..|++++.|++++.|++++.||++|.|++++.|.             ++.||++|.|++++.|..        +
T Consensus        30 ~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~  109 (262)
T 2qia_A           30 CIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLT  109 (262)
T ss_dssp             CEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCEEEECSSCEECTTCEEECCCTTTTSEE
T ss_pred             CEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCccccccCCccceEECCCceeCCCCEEcCCccCCCCcC
Confidence            3334445555555555555555555566666666666654             356666666666666642        4


Q ss_pred             EECCCCEECCCcEEc-C------------------eEECCCCEECCCcEec-CeEECCCCEECCCcEEcC
Q 012817          399 VVMNHVTIGDGCSIQ-G------------------SVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       399 ~i~~~~~ig~~~~i~-~------------------~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~  448 (456)
                      +|++++.|+.++.|. +                  +.|++++.||.++.|. ++.||++++|++++.+..
T Consensus       110 ~IG~~~~Ig~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~I~~~v~Ig~~~~ig~~s~V~~  179 (262)
T 2qia_A          110 KVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVAQ  179 (262)
T ss_dssp             EECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECS
T ss_pred             EECCCcEEeeeeEECCCCEECCCeEECCcccccCCcEECCCcEEccCCEECCCCEECCCCEEccCCEECC
Confidence            455555444444442 3                  4445555555555443 556666666666665543

>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*

Probab=99.45  E-value=2.8e-13  Score=121.71  Aligned_cols=108  Identities=19%  Similarity=0.239  Sum_probs=83.3

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |++.+||||||.|+||.     +.||+|+|++|+|||+|+++.+.. ++++|+|++++..  +.+.    .     .++.
T Consensus         5 m~~~~iILAgG~s~Rmg-----~~~K~ll~i~G~pli~~~l~~l~~-~~~~ivvv~~~~~--~~~~----~-----~~~~   67 (201)
T 1e5k_A            5 TTITGVVLAGGKARRMG-----GVDKGLLELNGKPLWQHVADALMT-QLSHVVVNANRHQ--EIYQ----A-----SGLK   67 (201)
T ss_dssp             CSEEEEEECCCCCSSSC-----SSCGGGSEETTEEHHHHHHHHHHH-HCSCEEEECSSSH--HHHH----T-----TSCC
T ss_pred             CcceEEEEcCCCCCcCC-----CCCCceeeECceeHHHHHHHHHHh-hCCEEEEEcCCcH--HHHh----h-----cCCe
Confidence            46889999999999993     379999999999999999999984 5899999987542  1221    1     1233


Q ss_pred             EEEccC-C-cChHHHHHHHHhcCCCCcEEEEcCCc--ccCCChhHHHHH
Q 012817           81 VATVPE-D-VGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAA  125 (456)
Q Consensus        81 ~~~~~~-~-~gt~~al~~~~~~l~~~~~lv~~~D~--i~~~~l~~~l~~  125 (456)
                      ++..+. . .|+.++++.+++.+..+.+++++||.  +....++.+++.
T Consensus        68 ~v~~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~  116 (201)
T 1e5k_A           68 VIEDSLADYPGPLAGMLSVMQQEAGEWFLFCPCDTPYIPPDLAARLNHQ  116 (201)
T ss_dssp             EECCCTTCCCSHHHHHHHHHHHCCSSEEEEEETTCTTCCTTHHHHHHHT
T ss_pred             EEecCCCCCCCHHHHHHHHHHhCCCCcEEEEeCCcCcCCHHHHHHHHhh
Confidence            443322 2 69999999999888767799999995  556668888875

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.45  E-value=1e-12  Score=117.28  Aligned_cols=79  Identities=11%  Similarity=0.151  Sum_probs=66.8

Q ss_pred             CEECCCCEECCCCeEe-----------------eeEECCCCEECCCcEEeCeEECCCCEECCCcEEc-CeEECCCCEECC
Q 012817          364 CMLGEGSQMGDKCSVK-----------------RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQE  425 (456)
Q Consensus       364 ~~i~~~~~I~~~~~i~-----------------~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~  425 (456)
                      +.||++|.|++++.|.                 +++||+++.|+.++.+.++.|+++|.||.+|.|. ++.||++|.||+
T Consensus        52 i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~gv~IG~~~~Iga  131 (194)
T 3tv0_A           52 IVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMIIGTNNVFEVGCYSQAMKMGDNNVIESKAYVGRNVILTSGCIIGA  131 (194)
T ss_dssp             EEECTTCEECTTCEEEECCCSCC---------CCEEECSSCEECTTCEECCSEECSSCEECTTCEECTTEEECSSCEECT
T ss_pred             eEECCCccccCCcccccccccccccccccCcCCceEECCcceEecceeEeeeeecccceecceeeECCeEEECCCCEECC
Confidence            4567777777777774                 2589999999999999999999999999999996 899999999999


Q ss_pred             CcEec-CeEECCCCEECC
Q 012817          426 RVALK-DCQVGQGYVVSA  442 (456)
Q Consensus       426 ~~~i~-~~~i~~~~~v~~  442 (456)
                      +++|. ++.|+++++|..
T Consensus       132 gsvV~~~~~Ip~~svv~G  149 (194)
T 3tv0_A          132 CCNLNTFEVIPENTVIYG  149 (194)
T ss_dssp             TCEECCCEEECTTEEEES
T ss_pred             CCEECCCcEECCCCEEEC
Confidence            99886 688888888743

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.44  E-value=1.7e-12  Score=118.41  Aligned_cols=86  Identities=19%  Similarity=0.383  Sum_probs=59.5

Q ss_pred             ccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-eeEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-CeEE
Q 012817          341 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVI  417 (456)
Q Consensus       341 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~~ii  417 (456)
                      ++++...+.+.+.|++++.|++++.|++++.||++|.|. +++|+++|.||++|.|. ++.|.++++||++|+|+ +|+|
T Consensus       101 ~i~~~a~i~~~v~IG~g~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i  180 (220)
T 4ea9_A          101 AIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVGARV  180 (220)
T ss_dssp             EECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEE
T ss_pred             cCCCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEE
Confidence            445666777777777777777777777777777777776 46777777777777776 56666667777766665 6666


Q ss_pred             CCCCEECCC
Q 012817          418 CSNAQLQER  426 (456)
Q Consensus       418 ~~~~~I~~~  426 (456)
                      .++++||++
T Consensus       181 ~~~~~Ig~~  189 (220)
T 4ea9_A          181 IPGVTIGAD  189 (220)
T ss_dssp             CTTCEECTT
T ss_pred             cCCcEECCC
Confidence            666666643

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.44  E-value=1.1e-12  Score=116.78  Aligned_cols=76  Identities=24%  Similarity=0.348  Sum_probs=63.1

Q ss_pred             EECCCCEECCCCeEe------eeEECCCCEECCCcEEeCeEECCCCEECCCcEEc-CeEECCCCEECCCcEec-CeEECC
Q 012817          365 MLGEGSQMGDKCSVK------RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQ  436 (456)
Q Consensus       365 ~i~~~~~I~~~~~i~------~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-~~~i~~  436 (456)
                      .||++|.|+++|.|.      +++||++|.||+++.|.+++|+++|.||.++.|. ++.|+++|.|+++++|. +..|++
T Consensus        74 ~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~gsvV~~~~~i~~  153 (191)
T 3ixc_A           74 EVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCILHACTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTRGKIVKS  153 (191)
T ss_dssp             EECTTCEECTTCEECC----CCEEECTTCEECTTCEECSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             EECCCCEECCCCEEeecCCcCCeEECCCCEECCCCEEECCEECCCCEECCCCEEeCCeEECCCCEECCCCEECCCcCcCC
Confidence            457888888888887      7899999999999999999999999999999886 68888888888877765 366666


Q ss_pred             CCEE
Q 012817          437 GYVV  440 (456)
Q Consensus       437 ~~~v  440 (456)
                      ++++
T Consensus       154 ~~~v  157 (191)
T 3ixc_A          154 GELW  157 (191)
T ss_dssp             TEEE
T ss_pred             CeEE
Confidence            6664

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.43  E-value=5.2e-13  Score=118.55  Aligned_cols=97  Identities=14%  Similarity=0.291  Sum_probs=76.9

Q ss_pred             CCceeCCCCEeCCCcEECCCC---EECCCCEECCCCeE------------eeeEECCCCEECCCcEEeCeEECCCCEECC
Q 012817          344 QNNIIHPSAELGSKTTVGPHC---MLGEGSQMGDKCSV------------KRSVIGRHCRIGSNVKVVNSVVMNHVTIGD  408 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~~~---~i~~~~~I~~~~~i------------~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~  408 (456)
                      ++..|++++.|++++.|..++   .||++|.|++++.|            .+++||++|.|++++.|.+++|+++|.||.
T Consensus        32 ~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~  111 (187)
T 3r3r_A           32 GDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHGCTIGNRVLVGM  111 (187)
T ss_dssp             EEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEECTTCEEESCEECSSEEECT
T ss_pred             CceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCCEECCCCEEeCcEECCCCEECC
Confidence            344555555555555554433   77888888888888            569999999999999999999999999999


Q ss_pred             CcEEc-CeEECCCCEECCCcEec-CeEECCCCEE
Q 012817          409 GCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVV  440 (456)
Q Consensus       409 ~~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v  440 (456)
                      ++.|. ++.|+++|.|+++++|. +..|++++++
T Consensus       112 ~~~I~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv  145 (187)
T 3r3r_A          112 GSIVLDGAIIEDDVMIGAGSLVPQHKRLESGYLY  145 (187)
T ss_dssp             TCEECTTCEECSSEEECTTCEECTTCEECTTEEE
T ss_pred             CCEECCCCEECCCCEECCCCEECCCcCcCCCcEE
Confidence            99995 89999999999888776 4677777764

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.43  E-value=9.4e-13  Score=125.09  Aligned_cols=103  Identities=19%  Similarity=0.271  Sum_probs=63.1

Q ss_pred             CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEee-eEECCCCEECCCcEEeC---------eEECCCCEECCCcEEc
Q 012817          344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVN---------SVVMNHVTIGDGCSIQ  413 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~~---------s~i~~~~~ig~~~~i~  413 (456)
                      +++.|++++.|+++ .|+.++.||++|.|+.++.|++ +.||++|.|++++.|.+         ++|+++|.||.+|.|.
T Consensus       140 ~~v~Ig~g~~I~~~-~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~~~~~~~~~~~v~IGd~v~IG~~a~I~  218 (304)
T 3eg4_A          140 HSAYIAPNAILMPS-FVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDNCFIGARSEVV  218 (304)
T ss_dssp             TTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTCCCCEECTTCEECTTCEEC
T ss_pred             CCcEECCCCEEeCC-EECCCCEECCCcEEcCCcEECCCCccCCCcEECCCCEECCccccCccCCeEEcCCCEECCCCEEc
Confidence            33444444444433 4444555555555555555543 56666666666666655         7778888888887764


Q ss_pred             -CeEECCCCEECCCcEec-Ce-------------EECCCCEECCCcEEc
Q 012817          414 -GSVICSNAQLQERVALK-DC-------------QVGQGYVVSAGCEYK  447 (456)
Q Consensus       414 -~~ii~~~~~I~~~~~i~-~~-------------~i~~~~~v~~~~~~~  447 (456)
                       +++||++|+|+++++|. ++             .|+++++|++|+.+.
T Consensus       219 ~gv~IG~~avIgagsvV~~g~~Igd~~~g~~~~~~Ip~~svV~~Gs~v~  267 (304)
T 3eg4_A          219 EGCIVREGSVLGMGVFIGKSTKIVDRATGEVFYGEVPPYSVVVAGTMPG  267 (304)
T ss_dssp             TTCEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEEEEEEEEC
T ss_pred             CCcEECCCcEECCCCEEcCCeEECccceeeeccCEeCCCCEEecCcEec
Confidence             78888888888888775 33             466666666555554

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=99.43  E-value=2.8e-12  Score=120.91  Aligned_cols=68  Identities=19%  Similarity=0.235  Sum_probs=34.0

Q ss_pred             eEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-CeEECCCCEECCCcEec-CeEECCCCEECCCcEEcC
Q 012817          381 SVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       381 s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~  448 (456)
                      +.||++|.||+++.|. ++.|++++.|+.++.+. +++|++++.|++++.|. ++.|++++.+.+++.+.+
T Consensus        89 ~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~~~~IG~~~~I~~~~~I~~~~~ig~~~~i~~~~~i~~  159 (273)
T 3fs8_A           89 TIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFVGEKSIIKDFVWLFPHVVLTN  159 (273)
T ss_dssp             CEECTTCEECSSCEECSSCEECSSCEECTTCEECSSCEECSSCEECTTCEECTTCEECTTCEECTTCEECC
T ss_pred             CEECCCCEECCceEECCCCEECCCCEECccceeCCceEECCceEECCCCEECCCceeCCceeecCceEecC
Confidence            4444555555555553 44555555555555553 45555555555555443 455555555555544443

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.42  E-value=1.6e-12  Score=120.05  Aligned_cols=99  Identities=20%  Similarity=0.352  Sum_probs=71.9

Q ss_pred             ccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-eeEECCCCEECCCcEEeC---------eEECCCCEECCCc
Q 012817          341 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVVN---------SVVMNHVTIGDGC  410 (456)
Q Consensus       341 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i~~---------s~i~~~~~ig~~~  410 (456)
                      .+.+++.|++++.|++++.|+.++.||++|.|+.+|.|. +++||++|.|++++.+.+         ++|+++|.||.+|
T Consensus        99 ~I~~~v~Ig~~~~I~~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~~~IG~~~  178 (240)
T 3r8y_A           99 IIRDHVEIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANV  178 (240)
T ss_dssp             EEBSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSCTTSCCCEECTTCEECTTC
T ss_pred             EECCCcEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccCCCCCCcEECCCCEECCCC
Confidence            344556666666666666666666677777777667665 578888888888888875         7888888888888


Q ss_pred             EE-cCeEECCCCEECCCcEecCeEECCCCEE
Q 012817          411 SI-QGSVICSNAQLQERVALKDCQVGQGYVV  440 (456)
Q Consensus       411 ~i-~~~ii~~~~~I~~~~~i~~~~i~~~~~v  440 (456)
                      .| .++.||++|.|++++++.+. |.+++++
T Consensus       179 ~I~~~~~Ig~~~~I~~gsvV~~~-vp~~~v~  208 (240)
T 3r8y_A          179 VVLEGVTVGKGAVVAAGAVVTED-VPPYTVV  208 (240)
T ss_dssp             EECTTCEECTTCEECTTCEECSC-BCTTEEE
T ss_pred             EECCCcEECCCCEECCCCEECCC-cCCCcEE
Confidence            88 58888888888888887654 4555554

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.41  E-value=8.7e-13  Score=126.64  Aligned_cols=109  Identities=13%  Similarity=0.206  Sum_probs=79.4

Q ss_pred             CcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCE----------------------------EC
Q 012817          339 YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCR----------------------------IG  390 (456)
Q Consensus       339 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~----------------------------ig  390 (456)
                      ...+.+.+.|++.+.|++++.|+ +|.|++++.|++++.|.+++|+++|.                            |+
T Consensus        77 ~~~I~g~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~I~~~~~~~~~~~~g~~I~  155 (334)
T 2pig_A           77 NARITQPCTLYNNVRIGDNVWID-RADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEHAQILQIY  155 (334)
T ss_dssp             TCEEESSCEEESSCEECTTCEEE-SCEEESSCEECTTCEEESCEEESSEEECTTCEEESSCEEEC--------CCCEEEC
T ss_pred             CcEEeeeeeECCCcEECCCCEEE-eEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCCEEEeecceeecccCCCeEEC
Confidence            33444566666666666666665 67777777777777776665544444                            45


Q ss_pred             CCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEecCeE-----ECCCCEECCCcEEcC
Q 012817          391 SNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQ-----VGQGYVVSAGCEYKG  448 (456)
Q Consensus       391 ~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~~-----i~~~~~v~~~~~~~~  448 (456)
                      ++++|.+|+|+++|+|+.+|.|++++|++++.|++++.+.+..     |++++.|+.++.+..
T Consensus       156 ~~a~I~~s~I~~g~~I~~~a~I~~svI~~~a~I~~~a~V~~~~~~~v~I~~~~~I~g~a~V~R  218 (334)
T 2pig_A          156 DRATVNHSRIVHQVQLYGNATITHAFIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHARVIA  218 (334)
T ss_dssp             TTCEEESCEEETTCEECTTCEEESEEECTTCEECTTCEEECCSSCCEEECTTCEECTTCEEEC
T ss_pred             CCCEEeccEEcCCCEEcCCeEEeCcEEcCCCEECCCcEECCceeccEEECCCcEEeeeEEEec
Confidence            5555666778888999999999999999999999999887654     888888888887754

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.41  E-value=8.5e-13  Score=118.97  Aligned_cols=112  Identities=15%  Similarity=0.128  Sum_probs=82.0

Q ss_pred             hhhccccccCCCcccCC--CceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe----eeEECCCCEECCCcEE------
Q 012817          328 DVIGEANHLSGYNFSAQ--NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKV------  395 (456)
Q Consensus       328 ~~l~~~~~~~~~~~~~~--~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~----~s~Ig~~~~ig~~~~i------  395 (456)
                      ..+.++..+.....+..  +..|++++.|++++.|++++.||++|.|++++.|.    +++||++|.|+++|.|      
T Consensus        33 ~~ig~~~~I~~~~~i~~~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~  112 (205)
T 3vbi_A           33 LSVGKNVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDD  112 (205)
T ss_dssp             SEECSSEEEBTTSEEESGGGEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEEESEECC
T ss_pred             eEECCCCEECCCeEEccCCeeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEEEeCCCC
Confidence            33455554544433333  67777888888888887888899999999999993    4899999999999999      


Q ss_pred             --------------------eCeEECCCCEECCCcEEc-CeEECCCCEECCCcEecCeEECCCCEE
Q 012817          396 --------------------VNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGYVV  440 (456)
Q Consensus       396 --------------------~~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~~~~i~~~~~v  440 (456)
                                          .+++|+++|.||.+|.|. ++.|+++|.|+++++|.+. |.+++++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig~gsvV~~~-v~~~~v~  177 (205)
T 3vbi_A          113 FSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKES-LDDWYIY  177 (205)
T ss_dssp             CSSSSCCSTTSCGGGCCCEECCEEECTTCEECTTCEECSSCEECTTCEECTTCEECSC-BCTTEEE
T ss_pred             cccccccCcccccccceeccCCEEECCCCEECCCCEEcCCCEECCCCEEcCCCEECCc-cCCCeEE
Confidence                                356777777777777775 7777777777777777654 3455444

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=99.41  E-value=4.5e-12  Score=124.84  Aligned_cols=15  Identities=7%  Similarity=0.020  Sum_probs=6.3

Q ss_pred             eEECCCCEECCCcEE
Q 012817          432 CQVGQGYVVSAGCEY  446 (456)
Q Consensus       432 ~~i~~~~~v~~~~~~  446 (456)
                      +.||++++|++++.+
T Consensus       305 v~Ig~~~~I~a~s~V  319 (374)
T 2iu8_A          305 ICIADHVIMMAQTGV  319 (374)
T ss_dssp             CEECTTEEECTTCEE
T ss_pred             cccCCCcEEccCcee
Confidence            344444444444443

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.40  E-value=3.1e-12  Score=121.86  Aligned_cols=91  Identities=20%  Similarity=0.313  Sum_probs=47.0

Q ss_pred             CceeCCCCEeCCCcEECCCCEECCCCEECCCCeEee-eEECCCCEECCCcEEe-CeEECC--------CCEECCCcEEc-
Q 012817          345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV-NSVVMN--------HVTIGDGCSIQ-  413 (456)
Q Consensus       345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~-~s~i~~--------~~~ig~~~~i~-  413 (456)
                      .+.+++++.||+++.|+++ .|+.++.||++|.|.+ ++||++|.||++|.|+ ++.|+.        +++||++|+|+ 
T Consensus       151 ~a~I~~~~~IG~g~~I~~~-~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~~~~~~~~~~v~IGd~v~IG~  229 (316)
T 3tk8_A          151 PAIARRGSFIAKNVVLMPS-YTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGA  229 (316)
T ss_dssp             TCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTCEECT
T ss_pred             CeEEeCCcEEcCCCEECCC-EEeCCCEECCCCEEccceEECCCCEECCCCEEcCCCEECCCcccccCCCcEECCCCEECC
Confidence            3444444444444444433 4444566666665554 5666666666666665 444444        45555555554 


Q ss_pred             CeEECCCCEECCCcEec-CeEECC
Q 012817          414 GSVICSNAQLQERVALK-DCQVGQ  436 (456)
Q Consensus       414 ~~ii~~~~~I~~~~~i~-~~~i~~  436 (456)
                      +|+|++++.||++++|. +++|++
T Consensus       230 ~a~I~~gv~IG~g~vIgagsvV~~  253 (316)
T 3tk8_A          230 RSEVVEGVIVEENSVISMGVYLGQ  253 (316)
T ss_dssp             TCEECTTCEECTTCEECTTCEECT
T ss_pred             CCEEcCCCEECCCCEEcCCCEEcC
Confidence            55555555555444442 344443

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.40  E-value=4.6e-13  Score=125.40  Aligned_cols=99  Identities=15%  Similarity=0.157  Sum_probs=61.1

Q ss_pred             CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcC---------
Q 012817          344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQG---------  414 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~---------  414 (456)
                      ..+.|+|.+.|.+++.||+++.|+++++|+.+     +.||++|.|+.++.++ ++|+++|.|+.++.|.+         
T Consensus       183 ~gv~I~P~AvI~~GA~IGeGv~Igp~a~Vn~n-----a~IGdg~iI~~~a~ig-v~IGdnv~IgpGa~IgG~~~~~~~~~  256 (347)
T 3r5d_A          183 AGVRIADTARVRLGAYIGEGTTVMHEGFVNFN-----AGTEGPGMIEGRVSAG-VFVGKGSDLGGGCSTMGTLSGGGNIV  256 (347)
T ss_dssp             TTEEESSGGGBBTTEEECTTEEECTTCEECTT-----EEESSSEEECSEECTT-CEECTTEEECTTCEECC------CCC
T ss_pred             CCcEECCcCEECCCCEECCCCEECCCCEECCC-----CEECCCcEEcCCceEe-EEECCCCEECCCCEEccccCCCCccc
Confidence            34555555555555555555544444444444     3556666666655443 66777777777777753         


Q ss_pred             eEECCCCEECCCcEecCeEECCCCEECCCcEEcCC
Q 012817          415 SVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGE  449 (456)
Q Consensus       415 ~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~~~~~~  449 (456)
                      ++||++|.||++++| ++.||++++|++|+.+...
T Consensus       257 V~IGdnv~IGAnAtI-GVtIGd~~iIGAGSVVtkd  290 (347)
T 3r5d_A          257 ISVGEGCLIGANAGI-GIPLGDRNIVEAGLYITAG  290 (347)
T ss_dssp             CEECTTCEECTTCEE-CSCBCTTCEECTTCEECTT
T ss_pred             eEECCCCEECCCCEE-eeEECCCCEECCCCEECCC
Confidence            677777777777777 7777777777777665543

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=99.40  E-value=5.9e-12  Score=120.46  Aligned_cols=35  Identities=14%  Similarity=0.225  Sum_probs=20.9

Q ss_pred             CeEECCCCEECCCcEec-CeEECCCCEECCCcEEcC
Q 012817          414 GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       414 ~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~  448 (456)
                      +++|+++|.||.++.|. ++.||++++|++++.+..
T Consensus       168 ~v~Igd~~~Ig~~~~V~~~v~IG~~a~ig~gs~V~~  203 (305)
T 3t57_A          168 HVVVEDNTHTAGASVVHQFCHIGSFAFIGGGSVVSQ  203 (305)
T ss_dssp             TCEECSSCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             CCEECCceEEcCCCEEcCCeEECCCCEEcCCCeEcc
Confidence            35555555566555443 566677777766666543

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.40  E-value=1.4e-12  Score=116.01  Aligned_cols=97  Identities=15%  Similarity=0.264  Sum_probs=74.6

Q ss_pred             CCceeCCCCEeCCCcEECC---CCEECCCCEECCCCeEeee------------EECCCCEECCCcEEeCeEECCCCEECC
Q 012817          344 QNNIIHPSAELGSKTTVGP---HCMLGEGSQMGDKCSVKRS------------VIGRHCRIGSNVKVVNSVVMNHVTIGD  408 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~---~~~i~~~~~I~~~~~i~~s------------~Ig~~~~ig~~~~i~~s~i~~~~~ig~  408 (456)
                      .+..|++++.|++++.|..   ++.||++|.|++++.|..+            +||++|.|++++.|.+++|+++|.||.
T Consensus        36 ~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~  115 (189)
T 3r1w_A           36 GDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHGCTIGNRVLIGM  115 (189)
T ss_dssp             EEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTTCEEESCEECSSEEECT
T ss_pred             eeeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECCCCEEeCcEECCCcEECC
Confidence            3444555555555555542   2367888888888888654            999999999999999999999999999


Q ss_pred             CcEEc-CeEECCCCEECCCcEec-CeEECCCCEE
Q 012817          409 GCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVV  440 (456)
Q Consensus       409 ~~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v  440 (456)
                      ++.|. ++.|+++|.|+++++|. +..|++++++
T Consensus       116 ~~~i~~~v~Ig~~~~Ig~~s~V~~g~~i~~~~vv  149 (189)
T 3r1w_A          116 KSMIMDGAIVEDEVIVAAGATVSPGKVLESGFVY  149 (189)
T ss_dssp             TCEECTTCEECSSCEECTTCEECTTCEECTTEEE
T ss_pred             CCEEcCCCEECCCCEEccCCEECCCCEeCCCCEE
Confidence            99985 88899999998888775 4677777766

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.39  E-value=2.5e-12  Score=120.90  Aligned_cols=102  Identities=14%  Similarity=0.239  Sum_probs=54.8

Q ss_pred             CceeCCCCEeCCCcEEC-----CCCEECCCCEECCCCeEee-eEECCCCEECCCcEEe---------CeEECCCCEECCC
Q 012817          345 NNIIHPSAELGSKTTVG-----PHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV---------NSVVMNHVTIGDG  409 (456)
Q Consensus       345 ~~~i~~~~~i~~~~~i~-----~~~~i~~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~---------~s~i~~~~~ig~~  409 (456)
                      .+.+++++.|++++.|+     .++.||++|.|+.++.|++ +.||++|.|++++.|.         +++|+++|.||.+
T Consensus       110 ~a~I~~~~~Ig~g~~I~~~~i~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~g~~~~~~~~~v~IGd~v~IG~~  189 (276)
T 3gos_A          110 PATVRKGAFIARNTVLMPSYVNIGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFVGAR  189 (276)
T ss_dssp             TCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTCEECTT
T ss_pred             CcEECCCCEECCCCEEcCCEEcCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCccccCCCCCeEECCCCEECCC
Confidence            33444444444444443     3555555555555554443 5556666666655553         3556666666666


Q ss_pred             cEEc-CeEECCCCEECCCcEec-CeEECCCC-------EECCCcEE
Q 012817          410 CSIQ-GSVICSNAQLQERVALK-DCQVGQGY-------VVSAGCEY  446 (456)
Q Consensus       410 ~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~-------~v~~~~~~  446 (456)
                      |.|. ++.||++|.||++++|. ++.|++.+       .|++++.+
T Consensus       190 a~I~~gv~IG~~avIgagsvV~~~~~I~~~~~~~~~~g~Vp~~svv  235 (276)
T 3gos_A          190 SEVVEGVIVEEGSVISMGVFIGQSTRIYDRETGEVHYGRVPAGSVV  235 (276)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEE
T ss_pred             CEECCCCEECCCCEECCCCEECCCcEEccccccceeccccCCCcEE
Confidence            6664 66666666666666654 34444443       45555554

>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*

Probab=99.39  E-value=9.9e-13  Score=128.46  Aligned_cols=114  Identities=19%  Similarity=0.264  Sum_probs=89.7

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHH-CCCCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLEL-SNIKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~-~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i   79 (456)
                      |++.+||||||.|+||    ....||+|+|++|+|||+|+++.+.+ .++++++|+++ .  .+.+.+++.+       +
T Consensus         2 mki~aIILAaG~ssRm----g~~~pK~ll~l~GkPLi~~~l~~l~~~~~~~~IvVvt~-~--~~~i~~~~~~-------v   67 (371)
T 1w55_A            2 SEMSLIMLAAGNSTRF----NTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSS-N--ITYMKKFTKN-------Y   67 (371)
T ss_dssp             CCEEEEEECCSCCTTT----CSSSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEES-C--HHHHHTTCSS-------S
T ss_pred             CccEEEEECCCCCccC----CCCCCcceEEECCeEHHHHHHHHHHccCCCCeEEEEcC-C--HHHHHHHhCC-------C
Confidence            5789999999999999    44579999999999999999999998 57999999997 3  2344443321       3


Q ss_pred             EEEEccCCcChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHHHHhcC
Q 012817           80 EVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHD  130 (456)
Q Consensus        80 ~~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~  130 (456)
                      .++  ....++.++++.+++.+..+.++++.||  ++....++++++.+.+.+
T Consensus        68 ~~v--~~g~g~~~sv~~aL~~l~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~  118 (371)
T 1w55_A           68 EFI--EGGDTRAESLKKALELIDSEFVMVSDVARVLVSKNLFDRLIENLDKAD  118 (371)
T ss_dssp             EEE--ECCSSHHHHHHHHHTTCCSSEEEEEETTCTTCCHHHHHHHHTTGGGCS
T ss_pred             EEE--eCCCChHHHHHHHHHhcCCCeEEEEeCCcccCCHHHHHHHHHHHHhcC
Confidence            343  3457788999999988866779999999  455567889998877654

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.39  E-value=4.7e-12  Score=118.97  Aligned_cols=98  Identities=15%  Similarity=0.171  Sum_probs=56.9

Q ss_pred             CceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-CeEECCCCEECCCcEEc---------C
Q 012817          345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ---------G  414 (456)
Q Consensus       345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~---------~  414 (456)
                      ...++|++.|++++.|++++.|+++ .|+.+     +.||++|.|++++.|+ ++.|+++|.|+.++.|.         +
T Consensus       104 g~~I~p~a~I~~~~~Ig~g~~I~~~-~i~~~-----~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~g~~~~~~~~~  177 (276)
T 3gos_A          104 GFRVVPPATVRKGAFIARNTVLMPS-YVNIG-----AFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANP  177 (276)
T ss_dssp             CCEECTTCEEBTTCEECTTCEECSE-EECTT-----CEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCC
T ss_pred             CcEECCCcEECCCCEECCCCEEcCC-EEcCC-----eEECCCCEECCCCEECCCCEECCCCEECCCCEECCccccCCCCC
Confidence            3445555555555555555555443 23322     4666666666666666 36666666666666663         3


Q ss_pred             eEECCCCEECCCcEec-CeEECCCCEECCCcEEcC
Q 012817          415 SVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       415 ~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~  448 (456)
                      ++||++|.||++++|. ++.||++++|++|+.+..
T Consensus       178 v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~  212 (276)
T 3gos_A          178 TIIEDNCFVGARSEVVEGVIVEEGSVISMGVFIGQ  212 (276)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             eEECCCCEECCCCEECCCCEECCCCEECCCCEECC
Confidence            6666666666666553 566666666666666554

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.38  E-value=4.6e-12  Score=120.31  Aligned_cols=94  Identities=20%  Similarity=0.331  Sum_probs=46.8

Q ss_pred             CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEee-eEECCCCEECCCcEEe-CeEECC--------CCEECCCcEEc
Q 012817          344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV-NSVVMN--------HVTIGDGCSIQ  413 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~-~s~i~~--------~~~ig~~~~i~  413 (456)
                      +.+.|++++.|++++.|+++ .|+.++.||++|.|.+ ++||++|.||++|.|. ++.|..        .++||++|+|+
T Consensus       134 p~a~I~~~v~Ig~g~~I~~~-~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~~~~~~~~~~~v~IGd~v~IG  212 (304)
T 3eg4_A          134 PNCIVRHSAYIAPNAILMPS-FVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDNCFIG  212 (304)
T ss_dssp             TTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTCCCCEECTTCEEC
T ss_pred             CCEEECCCcEECCCCEEeCC-EECCCCEECCCcEEcCCcEECCCCccCCCcEECCCCEECCccccCccCCeEEcCCCEEC
Confidence            34444444444444444443 4455555555555553 5555555555555555 344444        35555555554


Q ss_pred             -CeEECCCCEECCCcEec-CeEECCCC
Q 012817          414 -GSVICSNAQLQERVALK-DCQVGQGY  438 (456)
Q Consensus       414 -~~ii~~~~~I~~~~~i~-~~~i~~~~  438 (456)
                       +|+|.+++.||++++|. +++|.+++
T Consensus       213 ~~a~I~~gv~IG~~avIgagsvV~~g~  239 (304)
T 3eg4_A          213 ARSEVVEGCIVREGSVLGMGVFIGKST  239 (304)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTC
T ss_pred             CCCEEcCCcEECCCcEECCCCEEcCCe
Confidence             55555555555444443 34444433

>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}

Probab=99.37  E-value=6.7e-13  Score=119.26  Aligned_cols=103  Identities=23%  Similarity=0.276  Sum_probs=79.7

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~   81 (456)
                      ++.+||||||.|+||    .  .||+|+|++|+|||+|+++.+..+ +++++|++++...     +++.       ++.+
T Consensus        14 ~~~~iILA~G~g~Rm----g--~~K~ll~i~g~pll~~~l~~l~~~-~~~i~vv~~~~~~-----~~~~-------~~~~   74 (201)
T 2e8b_A           14 VNTCYVLAGGKSKRF----G--EDKLLYEIKGKKVIERVYETAKSV-FKEVYIVAKDREK-----FSFL-------NAPV   74 (201)
T ss_dssp             CCEEEEEEESSCCCC----S--TTHHHHHHHHHHHHHHHHHHHHTT-CSEEEEEESCSGG-----GGGG-------TCCE
T ss_pred             CceEEEECCCCCccC----C--CCcccceECceEHHHHHHHHHHHh-CCEEEEEeCcHHH-----hhcC-------CceE
Confidence            458999999999999    2  799999999999999999999988 8999999985532     1121       2444


Q ss_pred             EEcc-CCcChHHHHHHHHhcCCCCcEEEEcCCc--ccCCChhH-HH
Q 012817           82 ATVP-EDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGA-VT  123 (456)
Q Consensus        82 ~~~~-~~~gt~~al~~~~~~l~~~~~lv~~~D~--i~~~~l~~-~l  123 (456)
                      +..+ ...|++++++.+++.+..+.+++++||.  +....++. ++
T Consensus        75 v~~~~~~~g~~~~i~~al~~~~~~~~lv~~~D~P~i~~~~i~~~l~  120 (201)
T 2e8b_A           75 VLDEFEESASIIGLYTALKHAKEENVFVLSGDLPLMKKETVLYVLE  120 (201)
T ss_dssp             EECCCSSCCHHHHHHHHHHHCSSSEEEEEETTCTTCCHHHHHHHHH
T ss_pred             EecCCCCCCcHHHHHHHHHHcCCCCEEEEeCCcCcCCHHHHHHHHh
Confidence            4433 3579999999999888767899999995  33334555 54

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.36  E-value=1.9e-12  Score=120.39  Aligned_cols=31  Identities=26%  Similarity=0.261  Sum_probs=14.0

Q ss_pred             eEECCCCEECCCcEecCeEECCCCEECCCcEE
Q 012817          415 SVICSNAQLQERVALKDCQVGQGYVVSAGCEY  446 (456)
Q Consensus       415 ~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~~~  446 (456)
                      ++||++|.||++++| ++.||++++|++|+.+
T Consensus       234 V~IGDnv~IGanAtI-gVtIGd~~iIGAGSVV  264 (332)
T 3fsy_A          234 ISIGKRCLLGANSGL-GISLGDDCVVEAGLYV  264 (332)
T ss_dssp             CEECTTCEECTTCEE-CSCBCSSCEECTTCEE
T ss_pred             eEECCCCEECCCCEE-eeEECCCCEECCCCEE
Confidence            444444444444444 4444444444444443

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.36  E-value=2.2e-12  Score=131.22  Aligned_cols=86  Identities=15%  Similarity=0.265  Sum_probs=57.4

Q ss_pred             CCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-----------------CeEECCCCEEC
Q 012817          363 HCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-----------------GSVICSNAQLQ  424 (456)
Q Consensus       363 ~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-----------------~~ii~~~~~I~  424 (456)
                      ++.||++|.|+ ++.|.+++||++|.||+++.|. +++|+++|.||+++.+.                 ++.||++|.||
T Consensus       309 ~~~ig~~~~i~-~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig  387 (468)
T 1hm9_A          309 DSTIGAGAVIT-NSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFG  387 (468)
T ss_dssp             SCEECTTCEEC-SCEEESCEECTTCEECSSCEECSSCEECTTCEEEEEEEEESCEECTTCEEEEEEEEESEEECTTCEEC
T ss_pred             ccEEeCCcEEE-EEEEeccccCCCcEECCceEEecCcEECCccEECCCcEEeeeEEcCCcEeCCceEEccccccCCcEEC
Confidence            33455566666 6666677888888888888887 77777777766655554                 35566777777


Q ss_pred             CCcEec--------CeEECCCCEECCCcEEcCC
Q 012817          425 ERVALK--------DCQVGQGYVVSAGCEYKGE  449 (456)
Q Consensus       425 ~~~~i~--------~~~i~~~~~v~~~~~~~~~  449 (456)
                      +++++.        .++||+++.||+++.+.+.
T Consensus       388 ~~~~i~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~  420 (468)
T 1hm9_A          388 AGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAP  420 (468)
T ss_dssp             TTCEEECBCSSCBCCEEECTTCEECTTCEEESS
T ss_pred             CCcEEecCcCccCCCcEECCCeEECCCCEEeCC
Confidence            776653        3677777777777665443

>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}

Probab=99.36  E-value=2e-12  Score=116.52  Aligned_cols=114  Identities=17%  Similarity=0.244  Sum_probs=83.7

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~   82 (456)
                      |.+||||||.|+||    +  .||+|+|++|+|||+|+++.+..+   +++|++++.+   .+..+. ..    .++.++
T Consensus         1 m~aiILAgG~s~Rm----g--~~K~ll~~~G~pli~~~~~~l~~~---~vvvv~~~~~---~~~~~~-~~----~~~~~v   63 (208)
T 3ngw_A            1 MKVAVLVGGVGRRI----G--MEKTEVMLCGKKLIEWVLEKYSPF---QTVFVCRDEK---QAEKLS-SR----YEAEFI   63 (208)
T ss_dssp             CEEEEECCCCCTTT----T--SCGGGCEETTEEHHHHHHHHHTTS---EEEEECSSHH---HHHHHH-TT----SCSCEE
T ss_pred             CEEEEECCCchhhC----C--CCCcccEECCeeHHHHHHHHhcCC---CEEEEECCHH---HHHHHH-Hh----cCCeEE
Confidence            68999999999999    3  799999999999999999999876   8998887432   233222 11    123343


Q ss_pred             Ecc-CCcChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHHHHhcCceEEE
Q 012817           83 TVP-EDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA  135 (456)
Q Consensus        83 ~~~-~~~gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~  135 (456)
                      ... ...|...+++.+++.+ .+.+ +++||  ++....++.+++.+.+.++++.+
T Consensus        64 ~d~~~~~G~~~si~~gl~~~-~~~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v~  117 (208)
T 3ngw_A           64 WDLHKGVGSIAGIHAALRHF-GSCV-VAAIDMPFVKPEVLEHLYKEGEKAGCDALI  117 (208)
T ss_dssp             CCTTCCCSHHHHHHHHHHHH-SSEE-EEETTCTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred             ecCCCCCChHHHHHHHHHHc-CCCE-EEECCccCCCHHHHHHHHHHhhcCCCCEEE
Confidence            222 2357889999998877 5667 99999  45556788898887765555443

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.35  E-value=3.2e-12  Score=128.62  Aligned_cols=97  Identities=15%  Similarity=0.290  Sum_probs=83.6

Q ss_pred             CCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEc-C----eEEC
Q 012817          344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-G----SVIC  418 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~----~ii~  418 (456)
                      +++.|++++.|++++.| .++.||++|.|+++|.|.+++||++|.|++++.|.+++|+++|.||.+|.|. +    ++|+
T Consensus       290 g~v~IG~~~~I~~~a~I-~~v~IG~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~gv~IGd~v~IG~~a~I~~~~~~~v~IG  368 (496)
T 3c8v_A          290 GDTVIGENVLVSQRAYL-DNAWMGKGSNAQENCYIINSRLERNCVTAHGGKIINAHLGDMIFTGFNSFLQGSESSPLKIG  368 (496)
T ss_dssp             SSCEECTTCEECTTCEE-EEEEECTTCEECTTCEEEEEEEEESCEECTTCEEESEEEEETCEECTTCEEECCSSSCEEEC
T ss_pred             CCeEECCCCEECCCcEE-eceEecCCCEECCCceEeceEeCCCCEECCCcEEcCceECCCcEECCCCEEeCCCCcceEEC
Confidence            45555666666666666 5677899999999999999999999999999999999999999999999997 5    6999


Q ss_pred             CCCEECCCcEec---CeEECCCCEEC
Q 012817          419 SNAQLQERVALK---DCQVGQGYVVS  441 (456)
Q Consensus       419 ~~~~I~~~~~i~---~~~i~~~~~v~  441 (456)
                      ++|.||++++|.   ++.|+++++|.
T Consensus       369 ~~a~IGagsvV~~~~~~~I~~~s~v~  394 (496)
T 3c8v_A          369 DGCVVMPHTIIDLEEPLEIPAGHLVW  394 (496)
T ss_dssp             TTCEECTTCEEECSSCEEECSSEEEC
T ss_pred             CCCEECCCCEEecCCCcEeCCCCEEE
Confidence            999999999887   68888888877

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.35  E-value=5.5e-12  Score=120.16  Aligned_cols=88  Identities=16%  Similarity=0.267  Sum_probs=48.0

Q ss_pred             cCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEee-eEECCCCEECCCcEEeC---------eEECCCCEECCCcE
Q 012817          342 SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVN---------SVVMNHVTIGDGCS  411 (456)
Q Consensus       342 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~~---------s~i~~~~~ig~~~~  411 (456)
                      +...+.|++++.|+++ .++.++.||++|.|+.++.|++ +.||++|.|++++.|.+         ++|+++|.||.+|.
T Consensus       154 I~~~~~IG~g~~I~~~-~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~~~~~~~~~~v~IGd~v~IG~~a~  232 (316)
T 3tk8_A          154 ARRGSFIAKNVVLMPS-YTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSE  232 (316)
T ss_dssp             EBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTCEECTTCE
T ss_pred             EeCCcEEcCCCEECCC-EEeCCCEECCCCEEccceEECCCCEECCCCEEcCCCEECCCcccccCCCcEECCCCEECCCCE
Confidence            3344555555555443 4444444555555444444442 45666666666665554         55666666666666


Q ss_pred             Ec-CeEECCCCEECCCcEec
Q 012817          412 IQ-GSVICSNAQLQERVALK  430 (456)
Q Consensus       412 i~-~~ii~~~~~I~~~~~i~  430 (456)
                      |. ++.||++|+||+|++|.
T Consensus       233 I~~gv~IG~g~vIgagsvV~  252 (316)
T 3tk8_A          233 VVEGVIVEENSVISMGVYLG  252 (316)
T ss_dssp             ECTTCEECTTCEECTTCEEC
T ss_pred             EcCCCEECCCCEEcCCCEEc
Confidence            54 56666666666666554

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.35  E-value=3.3e-12  Score=129.50  Aligned_cols=83  Identities=17%  Similarity=0.326  Sum_probs=45.5

Q ss_pred             ECCCCEECCCCeEeeeEECCCCEECCCcEEe-CeEEC----------------------------------CCCEECCCc
Q 012817          366 LGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVM----------------------------------NHVTIGDGC  410 (456)
Q Consensus       366 i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-~s~i~----------------------------------~~~~ig~~~  410 (456)
                      ||++|.|++++.|.++.||++|.||+++.|. +++|+                                  ++|.||.++
T Consensus       303 ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~~~~~~Ig~~v~Ig~~~  382 (456)
T 2v0h_A          303 IGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHVGNFVEIKKSTVGKGSKVNHLTYVGDSEIGSNCNIGAGV  382 (456)
T ss_dssp             ECTTCEECSSCEEEEEEECTTCEECSSEEECTTCEECTTCEEEEEEEEESCEECTTCEEEEEEEEESEEECTTCEECTTC
T ss_pred             EeCCCEEcCCeEEccCcCCCCcEECCccEECCCCEECCCCEECCCCEEeccEECCCCEeccceeecCcEECCCcEECCce
Confidence            4555555555555555566655555555554 44444                                  444444444


Q ss_pred             EEc--------CeEECCCCEECCCcEec-CeEECCCCEECCCcEEcC
Q 012817          411 SIQ--------GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       411 ~i~--------~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~  448 (456)
                      .+.        ++.||++|.||++++|. ++.||++++|++++.+.+
T Consensus       383 ~i~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~v~Ig~~~~ig~~s~v~~  429 (456)
T 2v0h_A          383 ITCNYDGANKFKTIIGDDVFVGSDTQLVAPVKVANGATIGAGTTITR  429 (456)
T ss_dssp             EEEECSSSSCCCEEECSSCEECTTCEEEESEEECTTCEECTTCEECS
T ss_pred             EEeccccccCCCcEECCCCEECCCCEEcCCcEECCCCEECCCCEECC
Confidence            442        35566666666666543 566666666666665543

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.34  E-value=4e-12  Score=118.24  Aligned_cols=31  Identities=29%  Similarity=0.433  Sum_probs=14.8

Q ss_pred             EECCCCEECCCcEe-cCeEECCCCEECCCcEE
Q 012817          416 VICSNAQLQERVAL-KDCQVGQGYVVSAGCEY  446 (456)
Q Consensus       416 ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~  446 (456)
                      +|+++|.||++++| .+++||++++|++++.+
T Consensus       165 ~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV  196 (252)
T 3jqy_B          165 IISSYVWVGRNVSIMKGVSVGSGSVIGYGSIV  196 (252)
T ss_dssp             EECSSCEECSSEEECTTCEECTTCEECTTCEE
T ss_pred             EEecCcEECCCCEECCCCEECCCCEECCCCEE
Confidence            45555555555433 24444444444444444

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.31  E-value=9.9e-12  Score=115.56  Aligned_cols=88  Identities=14%  Similarity=0.215  Sum_probs=61.0

Q ss_pred             cCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-----eeEECCCCEECCCcEEeC---------eEECCCCEEC
Q 012817          342 SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-----RSVIGRHCRIGSNVKVVN---------SVVMNHVTIG  407 (456)
Q Consensus       342 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-----~s~Ig~~~~ig~~~~i~~---------s~i~~~~~ig  407 (456)
                      +++.++|.+++.|++++.|+++++|..++.|+.+|.|.     .+.||++|.|++++.|..         ++|+++|.||
T Consensus       164 I~P~AvI~~gA~IGeGv~Igp~~fVniga~Ig~g~~In~~i~iGv~IGd~v~IgpGa~IgG~~~~~~~~~V~IGDnv~IG  243 (332)
T 3fsy_A          164 IADADRVRLGAHLAPGTTVMHEGFVNYNAGTLGASMVEGRISAGVVVGDGSDVGGGASIMGTLSGGGTHVISIGKRCLLG  243 (332)
T ss_dssp             ESCGGGBBTTEEECTTCEECTTCEECTTEEESSCCEECSEECTTCEECTTCEECTTCEECSBCC---CCBCEECTTCEEC
T ss_pred             ECCcCEECCCCEECCCCEEccccEEEECCeECcCCEECCceecceEECCCCEECCCCEEcCCCCCCCccceEECCCCEEC
Confidence            34555555666666666666666666666666666654     257888888888888864         6788888888


Q ss_pred             CCcEEcCeEECCCCEECCCcEec
Q 012817          408 DGCSIQGSVICSNAQLQERVALK  430 (456)
Q Consensus       408 ~~~~i~~~ii~~~~~I~~~~~i~  430 (456)
                      .++.| ++.||++|+||+|++|.
T Consensus       244 anAtI-gVtIGd~~iIGAGSVVt  265 (332)
T 3fsy_A          244 ANSGL-GISLGDDCVVEAGLYVT  265 (332)
T ss_dssp             TTCEE-CSCBCSSCEECTTCEEC
T ss_pred             CCCEE-eeEECCCCEECCCCEEC
Confidence            88888 77788887777777664

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.29  E-value=7.9e-12  Score=111.50  Aligned_cols=51  Identities=24%  Similarity=0.461  Sum_probs=32.8

Q ss_pred             CCceeCC--CCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeC
Q 012817          344 QNNIIHP--SAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVN  397 (456)
Q Consensus       344 ~~~~i~~--~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~  397 (456)
                      ..+.|.|  .+.++.++.||++++|+.+|.|.+++.   .+||++|.||++|.|..
T Consensus        61 ~~~~I~~p~~~~ig~~v~IG~~~~I~~~~~i~~~~~---i~IG~~~~Ig~~~~I~~  113 (195)
T 3nz2_A           61 HKSCVQPPFHCEFGKTIRIGDHTFINMNVVMLDGAP---ITIGDHVLIGPSTQFYT  113 (195)
T ss_dssp             TTCEECSSEEESCSTTEEECTTCEECTTEEEECSSC---EEECTTCEECTTCEEEC
T ss_pred             CCcEEcCCeEEEeCCCeEECCCcEECcCCEEecCce---EEECCCCEECCCCEEec
Confidence            4555655  334555556666666655555544433   38999999999998874

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.28  E-value=1.7e-11  Score=111.15  Aligned_cols=103  Identities=11%  Similarity=0.100  Sum_probs=59.6

Q ss_pred             ceeCCCCEeCCC-cEECC---CCEECCCCEECCCCeEe----eeEECCCCEECCCcEE----eCeEECCCCEECCCcEEc
Q 012817          346 NIIHPSAELGSK-TTVGP---HCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKV----VNSVVMNHVTIGDGCSIQ  413 (456)
Q Consensus       346 ~~i~~~~~i~~~-~~i~~---~~~i~~~~~I~~~~~i~----~s~Ig~~~~ig~~~~i----~~s~i~~~~~ig~~~~i~  413 (456)
                      .++++++.|.+. +.+.+   ++.||++|.|++++.|.    ++.||++|.|++.+.+    .+++|+++|.||++|.|.
T Consensus        37 v~Ig~~~~I~~~~~~i~g~~~~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~  116 (215)
T 2wlg_A           37 VYIGNNCKIVSSNIRLKGNNITLFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIR  116 (215)
T ss_dssp             EEECTTCEEESCEEEEESSSCEEEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEEEE
T ss_pred             EEECCCCEEeCceEEEEcCCCEEEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEE
Confidence            344444444443 23322   25555555565555554    2666666666664443    345666666666666665


Q ss_pred             C--------------------eEECCCCEECCCcEec-CeEECCCCEECCCcEEcC
Q 012817          414 G--------------------SVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       414 ~--------------------~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~  448 (456)
                      +                    ++|+++|.||++++|. +++||++++|++++.+..
T Consensus       117 ~~~~h~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~gv~Ig~~~vIgagsvV~~  172 (215)
T 2wlg_A          117 NTDMHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLYK  172 (215)
T ss_dssp             SCCSSCEEETTTCBBCCCCCCEEECTTCEECTTCEECTTCEECSSCEECTTCEECS
T ss_pred             CCCCcccccccccccccCCCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEcC
Confidence            3                    3677777777776553 666677777766666543

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.28  E-value=1.2e-11  Score=115.93  Aligned_cols=89  Identities=15%  Similarity=0.170  Sum_probs=61.5

Q ss_pred             cccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEee-----eEECCCCEECCCcEEeC---------eEECCCCE
Q 012817          340 NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-----SVIGRHCRIGSNVKVVN---------SVVMNHVT  405 (456)
Q Consensus       340 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~-----s~Ig~~~~ig~~~~i~~---------s~i~~~~~  405 (456)
                      ..+++.+.|.+++.|++++.|+++++|+.++.|+++|.|..     +.||++|.|++++.|..         ++|+++|.
T Consensus       185 v~I~P~AvI~~GA~IGeGv~Igp~a~Vn~na~IGdg~iI~~~a~igv~IGdnv~IgpGa~IgG~~~~~~~~~V~IGdnv~  264 (347)
T 3r5d_A          185 VRIADTARVRLGAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAGVFVGKGSDLGGGCSTMGTLSGGGNIVISVGEGCL  264 (347)
T ss_dssp             EEESSGGGBBTTEEECTTEEECTTCEECTTEEESSSEEECSEECTTCEECTTEEECTTCEECC------CCCCEECTTCE
T ss_pred             cEECCcCEECCCCEECCCCEECCCCEECCCCEECCCcEEcCCceEeEEECCCCEECCCCEEccccCCCCccceEECCCCE
Confidence            35667788888888888888888888888888888887753     56777777777777653         45666666


Q ss_pred             ECCCcEEcCeEECCCCEECCCcEe
Q 012817          406 IGDGCSIQGSVICSNAQLQERVAL  429 (456)
Q Consensus       406 ig~~~~i~~~ii~~~~~I~~~~~i  429 (456)
                      ||.++.| ++.||++|+||+|++|
T Consensus       265 IGAnAtI-GVtIGd~~iIGAGSVV  287 (347)
T 3r5d_A          265 IGANAGI-GIPLGDRNIVEAGLYI  287 (347)
T ss_dssp             ECTTCEE-CSCBCTTCEECTTCEE
T ss_pred             ECCCCEE-eeEECCCCEECCCCEE
Confidence            6666665 5555555555555444

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=99.27  E-value=2.4e-11  Score=117.29  Aligned_cols=134  Identities=13%  Similarity=0.207  Sum_probs=79.4

Q ss_pred             CcchhhcccC--HHHHHHHhHhhhccc--cccC---CC------cccCCCceeCCCCEeCCCcEECCCCEECCC-CEECC
Q 012817          309 NSKYCVRLNS--IQAFMDINRDVIGEA--NHLS---GY------NFSAQNNIIHPSAELGSKTTVGPHCMLGEG-SQMGD  374 (456)
Q Consensus       309 ~~~~~~~i~~--~~~y~~~~~~~l~~~--~~~~---~~------~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~-~~I~~  374 (456)
                      ...+|.+.+.  +..|.....++....  ..+.   ..      ........|+|++.|++++.||+++.|+++ |.|+.
T Consensus       168 ~~~~Wt~~G~~~~~~f~~~~~~l~~~G~~~~~~~~dk~p~~~~~v~p~~gv~I~p~a~I~~~a~IG~gv~Ig~g~a~Ig~  247 (387)
T 2rij_A          168 SNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTRILESSKVRMGASLAAGTTIMPGASYVNF  247 (387)
T ss_dssp             CCEEEETTEEECHHHHHHHHHHHHHTTCCCCCCEEESSCBGGGTCCCCTTCEESCGGGBBTTCBCCTTCEECSSSCEECT
T ss_pred             ceeeeccCcccCHHHHHHHHHHHHhcCCccceeecccccchhccccCCCCEEEcCCCEECCCeEEcCCCEEeCCeeEECC
Confidence            4567777776  666666666554221  1111   11      111125556666666655566556665554 55555


Q ss_pred             CCeEeeeEECCCCEECCCcEEe-CeEECCCCEECCCcEE----cC-----eEECCCCEECCCcEecCeEECCCCEECCCc
Q 012817          375 KCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSI----QG-----SVICSNAQLQERVALKDCQVGQGYVVSAGC  444 (456)
Q Consensus       375 ~~~i~~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i----~~-----~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~  444 (456)
                      ++.    +||+ |.|+.  .|+ +++|+++|.|+.++.|    .+     ++||++|.||++++ .+++||++++|++|+
T Consensus       248 nv~----vIG~-~~I~~--~Ig~~vvIGdnv~Ig~ga~I~g~l~g~~~~~VvIGdnv~IGagAv-~GV~IGdgavIGAGs  319 (387)
T 2rij_A          248 NAG----TTGA-CMVEG--RISSSAIVGEGSDVGGGASILGVLSGTSGNAISVGKACLLGANSV-TGIPLGDNCIVDAGI  319 (387)
T ss_dssp             TCE----ESSC-CEECS--EECTTCEECTTCEECTTCEECCBCSSTTCCBCEECTTCEECTTCE-ECSCBCTTCEECTTC
T ss_pred             CcE----EECC-EEEee--EECCCCEECCCCEECCCceEcceecCCCccCeEEeCCCEECCCCc-CCcEECCCCEECCCC
Confidence            542    2555 55543  454 5666667777766653    22     78888888888888 778888888888887


Q ss_pred             EEcCCe
Q 012817          445 EYKGES  450 (456)
Q Consensus       445 ~~~~~~  450 (456)
                      .+...+
T Consensus       320 VVt~dv  325 (387)
T 2rij_A          320 AVLEGT  325 (387)
T ss_dssp             EECTTC
T ss_pred             EECCCc
Confidence            766543

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.24  E-value=3.3e-11  Score=112.01  Aligned_cols=95  Identities=20%  Similarity=0.311  Sum_probs=74.4

Q ss_pred             CceeCCCCEeCCCcEE--CCCCEECCCCEECCCCeEe----eeEECCCCEECCCcEEeCe--------------------
Q 012817          345 NNIIHPSAELGSKTTV--GPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKVVNS--------------------  398 (456)
Q Consensus       345 ~~~i~~~~~i~~~~~i--~~~~~i~~~~~I~~~~~i~----~s~Ig~~~~ig~~~~i~~s--------------------  398 (456)
                      ...|++++.|.+++.+  +.++.||++|.|+++|.|.    +++||++|.||++|.|.++                    
T Consensus        85 ~v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~v  164 (252)
T 3jqy_B           85 YVRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKDI  164 (252)
T ss_dssp             EEEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECSSSEEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCCCE
T ss_pred             eEEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEEecCCCcccccccccccccccCCe
Confidence            3456666666666666  3477889999999999888    7999999999999999864                    


Q ss_pred             EECCCCEECCCcEEc-CeEECCCCEECCCcEecCeEECCCCEE
Q 012817          399 VVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGYVV  440 (456)
Q Consensus       399 ~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~~~~i~~~~~v  440 (456)
                      +|+++|.||.+|.|. ++.|+++|.||++++|.+. |.+++++
T Consensus       165 ~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~~-vp~~~~~  206 (252)
T 3jqy_B          165 IISSYVWVGRNVSIMKGVSVGSGSVIGYGSIVTKD-VPSMCAA  206 (252)
T ss_dssp             EECSSCEECSSEEECTTCEECTTCEECTTCEECSC-BCTTEEE
T ss_pred             EEecCcEECCCCEECCCCEECCCCEECCCCEECcc-cCCCCEE
Confidence            788888888888775 7888888888888887654 4555554

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.24  E-value=1.9e-11  Score=109.39  Aligned_cols=85  Identities=15%  Similarity=0.203  Sum_probs=51.1

Q ss_pred             CCceeCCCCEe--CCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCe-------------------EECC
Q 012817          344 QNNIIHPSAEL--GSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNS-------------------VVMN  402 (456)
Q Consensus       344 ~~~~i~~~~~i--~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s-------------------~i~~  402 (456)
                      .+..|.+++.+  +.++.||+++.|+++|.|.+++.   .+||++|.||++|.|..+                   +|++
T Consensus        59 ~~~~i~~~~~~~~g~~~~IG~~~~I~~~~~i~~~~~---v~IG~~v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~  135 (199)
T 3ftt_A           59 DNVSISIPFDTDYGWNVKLGKNVYVNTNCYFMDGGQ---ITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGS  135 (199)
T ss_dssp             SSEEECSSEEESSSTTEEECSSEEECTTEEEECSSC---EEECSSEEECTTCEEECEECCSSHHHHHTTEEEECCEEECS
T ss_pred             CCeEEeCCEEEEecCCcEECCCeEECCCeEEecCCE---EEECCCCEECCCCEEecCCCcCccccccccceecCCeEEcC
Confidence            56666666665  56666666666666666654432   489999999999999532                   3444


Q ss_pred             CCEECCCcEEc-CeEECCCCEECCCcEecC
Q 012817          403 HVTIGDGCSIQ-GSVICSNAQLQERVALKD  431 (456)
Q Consensus       403 ~~~ig~~~~i~-~~ii~~~~~I~~~~~i~~  431 (456)
                      +|.||.+|.|. ++.||++|+||++++|..
T Consensus       136 ~v~IG~~~~I~~gv~IG~~~vIgagsvV~~  165 (199)
T 3ftt_A          136 NTWFGGHVAVLPGVTIGEGSVIGAGSVVTK  165 (199)
T ss_dssp             SEEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             CcEEcCCCEECCCCEECCCCEECCCCEECc
Confidence            44444444443 444555555554444443

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.23  E-value=2.4e-11  Score=123.15  Aligned_cols=26  Identities=12%  Similarity=0.174  Sum_probs=17.1

Q ss_pred             eeeEEEEecCcchh--hcccCHHHHHHHhH
Q 012817          300 HKCCVYIASNSKYC--VRLNSIQAFMDINR  327 (456)
Q Consensus       300 ~~~~~yi~~~~~~~--~~i~~~~~y~~~~~  327 (456)
                      .++..|  ...++|  .+++++++|..+..
T Consensus       213 ~~v~~~--~~~~~~~~~~I~tp~Dl~~ae~  240 (459)
T 4fce_A          213 KKIATV--HPTRLSEVEGVNNRLQLSALER  240 (459)
T ss_dssp             CCEEEE--CCSSGGGGCCCSSHHHHHHHHH
T ss_pred             CeEEEE--EcCCHHHhhCCCCHHHHHHHHH
Confidence            345555  455555  45889999988764

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=99.22  E-value=3.3e-11  Score=120.73  Aligned_cols=99  Identities=15%  Similarity=0.246  Sum_probs=81.3

Q ss_pred             CCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEe
Q 012817          350 PSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVAL  429 (456)
Q Consensus       350 ~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i  429 (456)
                      +...+.+.+.+.+++.|+++. ++.++.+.++.||++|.| +++.|.+|+|+++|+||++|.|.+|+|+++|.|+++++|
T Consensus       295 ~~~~i~~~~~i~~~~~i~~~~-~~~~~~i~~~~ig~~~~I-~~~~i~~~~ig~~~~I~~~~~i~~~~i~~~~~i~~~~~i  372 (420)
T 3brk_X          295 KSWPIWTYAEITPPAKFVHDD-EDRRGSAVSSVVSGDCII-SGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQL  372 (420)
T ss_dssp             CSSCCCCCCCCCCCCEEECBC-SSCBCEEESCEECSSCEE-ESCEEESCEECTTCEECTTCEEEEEEECTTCEECTTCEE
T ss_pred             CCCceeeccccCCCcEEeccc-ccCCcEecCCEECCCCEE-cCCEEeCcEEcCCCEECCCCEEcceEEcCCCEECCCCEE
Confidence            333444444455555554421 233777888999999999 899999999999999999999999999999999999999


Q ss_pred             cCeEECCCCEECCCcEEcCCe
Q 012817          430 KDCQVGQGYVVSAGCEYKGES  450 (456)
Q Consensus       430 ~~~~i~~~~~v~~~~~~~~~~  450 (456)
                      .+|+||+++.|++|+.+.+..
T Consensus       373 ~~~~ig~~~~i~~~~~i~~~~  393 (420)
T 3brk_X          373 SNVVIDHGVVIPEGLIVGEDP  393 (420)
T ss_dssp             EEEEECTTCEECTTCEESSCH
T ss_pred             eceEECCCCEECCCCEEeCCC
Confidence            999999999999999988653

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.21  E-value=6.7e-11  Score=104.83  Aligned_cols=87  Identities=20%  Similarity=0.271  Sum_probs=52.5

Q ss_pred             CCCceeCCCCEe--CCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-------------------CeEEC
Q 012817          343 AQNNIIHPSAEL--GSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-------------------NSVVM  401 (456)
Q Consensus       343 ~~~~~i~~~~~i--~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-------------------~s~i~  401 (456)
                      +.+..|.|++.+  |.++.||+++.|+.+|.|.+.+.   ..||++|.||++|.|.                   .++|+
T Consensus        60 g~~~~I~~~~~~~~g~~~~IG~~~~i~~~~~i~~~~~---i~IG~~~~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG  136 (188)
T 3srt_A           60 GKQINVEQNIRCDYGYNIHVGENFFANYDCIFLDVCK---IEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIG  136 (188)
T ss_dssp             CSCEEECSCEEESSSTTEEECTTEEECTTEEEECSSC---EEECSSCEECTTCEEECEECCSSHHHHHTTEEEECCEEEC
T ss_pred             CCCCEEcCCEEEEeCCCeEECCcccccCceEEecCCc---eEECCeeEECCCcEEeeCCccCchhhccccceECCCcEEC
Confidence            356667776665  35566666666666666655443   3899999999999993                   34455


Q ss_pred             CCCEECCCcEEc-CeEECCCCEECCCcEecCe
Q 012817          402 NHVTIGDGCSIQ-GSVICSNAQLQERVALKDC  432 (456)
Q Consensus       402 ~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~~~  432 (456)
                      ++|.||.+|.|. ++.||++|+||++++|.+.
T Consensus       137 ~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d  168 (188)
T 3srt_A          137 DNVWIGGGVIITPGITIGDNVVIGAGSVVTKD  168 (188)
T ss_dssp             SSCEECTTCEECTTCEECSSEEECTTCEECSC
T ss_pred             CCcEEcCCCEECCCcEECCCCEECCCCEECcc
Confidence            555555555553 4555555555555544433

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.21  E-value=1.2e-10  Score=103.50  Aligned_cols=50  Identities=24%  Similarity=0.416  Sum_probs=33.6

Q ss_pred             CceeCCCCEe--CCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeC
Q 012817          345 NNIIHPSAEL--GSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVN  397 (456)
Q Consensus       345 ~~~i~~~~~i--~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~  397 (456)
                      .+.|+|++.+  +.++.||++++|+++|.|.+.+   +..||++|.||++|.|.+
T Consensus        64 ~~~I~~~~~~~~g~~v~IG~~~~I~~~~~i~~~~---~v~IG~~~~Ig~~~~I~~  115 (190)
T 3hjj_A           64 KAQINPDFRCDYGYNIHVGKSFFANFNCVILDVC---EVRIGDHCMFAPGVHIYT  115 (190)
T ss_dssp             CCEECSSCEESSSTTEEECTTCEECTTCEEECSS---CEEECTTCEECTTCEEEC
T ss_pred             CcEECCCEEEEeCCceEECCceeeCCCeEEEeCC---CeEECCceEEcCCcEEec
Confidence            5666666655  5555666666666555555433   358999999999999953

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=99.21  E-value=9.1e-11  Score=120.23  Aligned_cols=110  Identities=12%  Similarity=0.156  Sum_probs=70.3

Q ss_pred             ccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEee----------------------------------eEECCC
Q 012817          341 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR----------------------------------SVIGRH  386 (456)
Q Consensus       341 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~----------------------------------s~Ig~~  386 (456)
                      ++.....|++.+.|++++.+.+++.++.+|.|++++.+.+                                  ++|+++
T Consensus       279 ~i~~dv~IG~dv~I~~~v~i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i~~~  358 (501)
T 3st8_A          279 WIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGAD  358 (501)
T ss_dssp             EECTTCEECTTCEECSSEEEETTCEECTTCEECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEEECTTCEECTT
T ss_pred             cccCceEECCcceecceeeecCccccccceEEeeceeecCceEecCCEEEeecccccccccccccCCceeecCCcEEccc
Confidence            4456677777788877777777777777777766655432                                  344455


Q ss_pred             CEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECCCcEec--------CeEECCCCEECCCcEEcCCe
Q 012817          387 CRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK--------DCQVGQGYVVSAGCEYKGES  450 (456)
Q Consensus       387 ~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~--------~~~i~~~~~v~~~~~~~~~~  450 (456)
                      |.||.+|.+.+|+|+++++|++.+.+++|+||++|.||+|+++.        .++||+++.||.++.+....
T Consensus       359 v~IG~~v~ik~s~Ig~gskI~~~~~i~d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~~~~l~~~v  430 (501)
T 3st8_A          359 GKLGAFVEVKNSTIGTGTKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTMFVAPV  430 (501)
T ss_dssp             CEEEETEEEESCEECTTCEEEESCEEESEEECSSCEECTTCEEECBCSSSBCCEEECTTCEECTTCEEESSE
T ss_pred             cccCCeEEEccceecCCcEEeccceecCceEcCCCEECCCEEEEcccCCcccCCEECCCcEECCCCEEcCCc
Confidence            55555555556666666666666666677777777777776652        26666666666665554433

>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*

Probab=99.20  E-value=7.6e-11  Score=118.48  Aligned_cols=134  Identities=14%  Similarity=0.127  Sum_probs=93.4

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccC-CcchHHHHHHHHHHCCCC-----EEEEEecCchhhHHHHhhhh-h--h
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLELSNIK-----DLIVVVEGADAALRVGGWIS-A--A   72 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~-gkpli~~~l~~l~~~gi~-----~v~iv~~~~~~~~~i~~~~~-~--~   72 (456)
                      ++-+||||||.|+||    ....||+|+|++ |||+|++.++++...+..     .++|.+... ..+.+.+|+. +  +
T Consensus        75 k~avViLAGGlGTRL----g~~~PK~llpV~~gk~fLe~~ie~l~~~~~~~g~~ip~viMtS~~-t~e~t~~~f~~~~~~  149 (505)
T 2oeg_A           75 STVVLKLNGGLGTGM----GLCDAKTLLEVKDGKTFLDFTALQVQYLRQHCSEHLRFMLMDSFN-TSASTKSFLKARYPW  149 (505)
T ss_dssp             TEEEEEEECCCCGGG----TCCSCGGGSEEETTEEHHHHHHHHHHHHHHHTCTTCEEEEEECHH-HHHHHHHHHHHHCHH
T ss_pred             cceEEEEcCCccccc----CCCCCCcccccCCCCcHHHHHHHHHHHHHHhcCCCcCEEEEeCCC-CHHHHHHHHhhhhhc
Confidence            357899999999999    567999999999 999999999999876533     555665433 2346666665 3  2


Q ss_pred             cc-CccceEEEE-----------------------ccCCcChHHHHHHH-----HhcC---CCCcEEEEcCCcccC-CCh
Q 012817           73 YV-DRLHVEVAT-----------------------VPEDVGTAGALRAI-----AHHL---TAKDVLVVSGDLVSD-VPP  119 (456)
Q Consensus        73 ~~-~~~~i~~~~-----------------------~~~~~gt~~al~~~-----~~~l---~~~~~lv~~~D~i~~-~~l  119 (456)
                      +. ..-++.+..                       ...+.|+++++..+     ++.+   ..++++|.++|.+.. .|+
T Consensus       150 fGl~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL~~~~D~  229 (505)
T 2oeg_A          150 LYQVFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATIDK  229 (505)
T ss_dssp             HHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCTTCCCCH
T ss_pred             cCCCccceEEEEEcCEEeEecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCccccccCH
Confidence            21 100122110                       11235898887644     2222   257899999998764 467


Q ss_pred             hHHHHHHHhcCceEEEEEeecc
Q 012817          120 GAVTAAHRRHDAVVTAMICSVP  141 (456)
Q Consensus       120 ~~~l~~~~~~~a~~t~~~~~~~  141 (456)
                       .++.+|.++++++++.+.+..
T Consensus       230 -~llg~~~~~~ad~~~~v~~k~  250 (505)
T 2oeg_A          230 -RVLAYMEKEKIDFLMEVCRRT  250 (505)
T ss_dssp             -HHHHHHHHHTCSEEEEEEECC
T ss_pred             -HHHHHHHhcCCcEEEEEEEec
Confidence             899999999999998887654

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=99.20  E-value=3.6e-11  Score=113.92  Aligned_cols=87  Identities=20%  Similarity=0.334  Sum_probs=53.4

Q ss_pred             CceeCCCCEeCCCcEE--CCCCEECCCCEECCCCeEee-eEECCCCEECCCcEEe-----CeEECCCCEECCCcEEc-Ce
Q 012817          345 NNIIHPSAELGSKTTV--GPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV-----NSVVMNHVTIGDGCSIQ-GS  415 (456)
Q Consensus       345 ~~~i~~~~~i~~~~~i--~~~~~i~~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~-----~s~i~~~~~ig~~~~i~-~~  415 (456)
                      ...|+|++.||+++.|  +.++.||++|.||++|.|.+ ++||+++.+++++.+.     +++|+++|.||.+|.|. ++
T Consensus       163 gv~I~p~a~IG~~v~I~~g~gvvIG~~~~IG~~v~I~~~vtIG~~~~ig~~~~i~~~~~~~~~IGd~v~IGaga~Ilggv  242 (313)
T 3q1x_A          163 SIDIHPGASIKGHFFIDHGVGVVIGETAIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTKRHPTVGDYVTIGTGAKVLGNI  242 (313)
T ss_dssp             CCEECTTCEECSSCEESSCTTCEECTTCEECSSCEECTTCEEECCCCCCTTCCCCCCSSCSCEECSSCEECTTCEEESSC
T ss_pred             CeEECCCCEECCCEEECCCCceEECCCcEECCCCEECCCcEEeCCcEECCCceEcCCCccCCEECCCCEECCCCEECCCc
Confidence            4455566666555555  44455555555555554442 4444444444444443     34788888888888774 78


Q ss_pred             EECCCCEECCCcEecC
Q 012817          416 VICSNAQLQERVALKD  431 (456)
Q Consensus       416 ii~~~~~I~~~~~i~~  431 (456)
                      .||++|.||+|++|..
T Consensus       243 ~IG~~a~IGagsvV~~  258 (313)
T 3q1x_A          243 IVGSHVRIGANCWIDR  258 (313)
T ss_dssp             EECSSEEECTTCEECS
T ss_pred             EECCCCEECCCCEECC
Confidence            8888888888887753

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=99.18  E-value=8.5e-11  Score=111.35  Aligned_cols=95  Identities=18%  Similarity=0.316  Sum_probs=58.1

Q ss_pred             CCCCEeCCCcEECCCCEE--CCCCEECCCCeEeeeEECCCCEECCCcEEe-CeEECCCCEECCCcEEcCeEECCCCEECC
Q 012817          349 HPSAELGSKTTVGPHCML--GEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQGSVICSNAQLQE  425 (456)
Q Consensus       349 ~~~~~i~~~~~i~~~~~i--~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~~~ii~~~~~I~~  425 (456)
                      ..++.|++++.||+++.|  +.+++||++|     .||++|.|+++++|+ ++.+++++.++.++. ..++||++|.||+
T Consensus       161 ~~gv~I~p~a~IG~~v~I~~g~gvvIG~~~-----~IG~~v~I~~~vtIG~~~~ig~~~~i~~~~~-~~~~IGd~v~IGa  234 (313)
T 3q1x_A          161 YTSIDIHPGASIKGHFFIDHGVGVVIGETA-----IIGEWCRIYQSVTLGAMHFQEEGGVIKRGTK-RHPTVGDYVTIGT  234 (313)
T ss_dssp             HHCCEECTTCEECSSCEESSCTTCEECTTC-----EECSSCEECTTCEEECCCCCCTTCCCCCCSS-CSCEECSSCEECT
T ss_pred             cCCeEECCCCEECCCEEECCCCceEECCCc-----EECCCCEECCCcEEeCCcEECCCceEcCCCc-cCCEECCCCEECC
Confidence            345555555555555555  3344444443     555566665555555 344555555544431 3468888888888


Q ss_pred             CcEe-cCeEECCCCEECCCcEEcCC
Q 012817          426 RVAL-KDCQVGQGYVVSAGCEYKGE  449 (456)
Q Consensus       426 ~~~i-~~~~i~~~~~v~~~~~~~~~  449 (456)
                      +++| .+++||++++||+|+.+...
T Consensus       235 ga~Ilggv~IG~~a~IGagsvV~~d  259 (313)
T 3q1x_A          235 GAKVLGNIIVGSHVRIGANCWIDRD  259 (313)
T ss_dssp             TCEEESSCEECSSEEECTTCEECSC
T ss_pred             CCEECCCcEECCCCEECCCCEECCC
Confidence            8865 46888888888888877543

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=99.16  E-value=9.6e-11  Score=104.62  Aligned_cols=51  Identities=22%  Similarity=0.322  Sum_probs=30.9

Q ss_pred             CCCceeCCCCE--eCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe
Q 012817          343 AQNNIIHPSAE--LGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV  396 (456)
Q Consensus       343 ~~~~~i~~~~~--i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~  396 (456)
                      +.++.|.|.+.  ++.++.||+++.|+.+|.|.+..   ...||++|.||++|.|.
T Consensus        59 g~~~~I~~~~~~~~g~~i~IG~~~~I~~~~~i~~~~---~i~IG~~v~Ig~~v~I~  111 (203)
T 1krr_A           59 GENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDY---TVTIGDNVLIAPNVTLS  111 (203)
T ss_dssp             CSSCEECSCEEESCSTTEEECSSCEECSCEEEECSS---CEEECSSCEECSSCEEE
T ss_pred             CCCcEEcCCeEEEeCCCeEECCeeEECCccEEeccc---ceEECCCCEECCCCEEe
Confidence            34566666643  34444555555555444444322   25899999999999886

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=99.15  E-value=3.3e-10  Score=99.60  Aligned_cols=83  Identities=23%  Similarity=0.358  Sum_probs=50.4

Q ss_pred             CceeCCCCE--eCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-------------------CeEECCC
Q 012817          345 NNIIHPSAE--LGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-------------------NSVVMNH  403 (456)
Q Consensus       345 ~~~i~~~~~--i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-------------------~s~i~~~  403 (456)
                      +..|+|++.  ++.++.||+++.|+++|.|.+.+   +..||++|.|+++|.|.                   +++|+++
T Consensus        58 ~~~I~~~~~~~~g~~v~IG~~~~I~~~~~i~~~~---~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~  134 (182)
T 1ocx_A           58 EAYIEPTFRCDYGYNIFLGNNFFANFDCVMLDVC---PIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNN  134 (182)
T ss_dssp             SEEECSCEEESSSTTEEECSSEEECSSEEEECSS---CEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTT
T ss_pred             CEEEeCCEEEEeCCCEEECCCcEEeCCeEEEecc---ceEEcCCcEEeCCcEEEeCCCccChhhcccCccccCCeEEeCC
Confidence            566666633  45566666666666666554332   35899999999999984                   3445555


Q ss_pred             CEECCCcEEc-CeEECCCCEECCCcEec
Q 012817          404 VTIGDGCSIQ-GSVICSNAQLQERVALK  430 (456)
Q Consensus       404 ~~ig~~~~i~-~~ii~~~~~I~~~~~i~  430 (456)
                      |.||.+|.|. ++.||++|+|+++++|.
T Consensus       135 v~Ig~~a~I~~gv~IG~~~vIgagsvV~  162 (182)
T 1ocx_A          135 VWIGGRAVINPGVTIGDNVVVASGAVVT  162 (182)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             eEECCCCEECCCcEECCCCEECCCCEEC
Confidence            5555555553 55555555555555544

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=99.14  E-value=2.3e-10  Score=106.72  Aligned_cols=96  Identities=20%  Similarity=0.232  Sum_probs=54.4

Q ss_pred             CceeCCCCEeCCCcEEC--CCCEECCCCEECCCCeEeeeEECCCCEECCCcEE---eCeEECCCCEECCCcEEc-CeEEC
Q 012817          345 NNIIHPSAELGSKTTVG--PHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKV---VNSVVMNHVTIGDGCSIQ-GSVIC  418 (456)
Q Consensus       345 ~~~i~~~~~i~~~~~i~--~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i---~~s~i~~~~~ig~~~~i~-~~ii~  418 (456)
                      ++.|+|++.||+++.|+  .++.||++|.||++|     .|+.+|.|+.....   ++++|+++|.||.+|.|. +++||
T Consensus       164 gi~I~p~a~IG~~v~I~hg~gvvIG~~~~IGd~v-----~I~~gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il~gv~IG  238 (287)
T 3mc4_A          164 QTDIHPAARLGSGLFLDHATGLVVGETAVVEDNV-----SILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVG  238 (287)
T ss_dssp             CCEECTTCEECSSCEEESCTTCEECTTCEECSSC-----EEETTCEEEC-----CCCSCEECTTCEECTTCEEESSCEEC
T ss_pred             CeEECCCCEECCCeEEccCCCeEECCCeEECCCC-----EEcCCCEEcCCcccCCCcCCEECCCCEECCCCEECCCcEEC
Confidence            44555555555555554  344444444444443     33333333332111   136889999999998886 79999


Q ss_pred             CCCEECCCcEecCeEECCCCEECCCcE
Q 012817          419 SNAQLQERVALKDCQVGQGYVVSAGCE  445 (456)
Q Consensus       419 ~~~~I~~~~~i~~~~i~~~~~v~~~~~  445 (456)
                      ++|+||++++|.+.+-....++|..++
T Consensus       239 ~~a~IGagsvV~kdVp~~svvvG~PAk  265 (287)
T 3mc4_A          239 QCSKIAAGSVVLKSVPHNVTVAGVPAR  265 (287)
T ss_dssp             TTCEECTTCEECSCBCTTEEEETTTTE
T ss_pred             CCCEECCCCEEccccCCCCEEEccCCE
Confidence            999999998887654333333344443

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=99.13  E-value=2e-10  Score=108.55  Aligned_cols=90  Identities=19%  Similarity=0.331  Sum_probs=55.7

Q ss_pred             CceeCCCCEeCCCcEE--CCCCEECCCCEECCCCeEeeeEECCCCEECCCcE-----------E-eCeEECCCCEECCCc
Q 012817          345 NNIIHPSAELGSKTTV--GPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVK-----------V-VNSVVMNHVTIGDGC  410 (456)
Q Consensus       345 ~~~i~~~~~i~~~~~i--~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~-----------i-~~s~i~~~~~ig~~~  410 (456)
                      ...|+|++.||+++.|  +.++.||++|.||++|     .|+.+|.||.++.           + ++.+|+++|.||.+|
T Consensus       190 gv~I~p~a~IG~~v~I~hg~gvvIG~~~~IG~~v-----~I~~gvtIg~~~~~~~~~g~~i~~~~~~~~IGd~V~IGaga  264 (310)
T 3f1x_A          190 GIDIHPGAQIGHHFTIDHGTGVVIGATSIIGNNV-----KLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNA  264 (310)
T ss_dssp             SCEECTTCEECSSCEEESCTTCEECTTCEECSSC-----EEETTCEEECC--------------CCSCEECTTCEECTTC
T ss_pred             CcEECCCCEECCCcEECCCCCeEECCceEEcCCC-----EECCCCEECCCccccccccccccCCCCCCEECCCcEEcCCC
Confidence            4556666666666666  5555555555555555     4455555555441           1 144788888888888


Q ss_pred             EEc-CeEECCCCEECCCcEecCeEECCCCEE
Q 012817          411 SIQ-GSVICSNAQLQERVALKDCQVGQGYVV  440 (456)
Q Consensus       411 ~i~-~~ii~~~~~I~~~~~i~~~~i~~~~~v  440 (456)
                      .|. ++.||++|+||+|++|... |.++++|
T Consensus       265 ~Il~gv~IGd~a~IGagsvV~~d-Vp~~svv  294 (310)
T 3f1x_A          265 TILGRVTIGKGATVGGNIWVTEN-VPAGSRI  294 (310)
T ss_dssp             EEESSCEECTTCEECSSCEECSC-BCTTCEE
T ss_pred             EECCCcEECCCCEECCCCEECCc-cCCCcEE
Confidence            885 8888888888888877654 3444444

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=99.11  E-value=2.1e-10  Score=101.23  Aligned_cols=94  Identities=27%  Similarity=0.369  Sum_probs=56.2

Q ss_pred             CCceeCCCC--EeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-------------------CeEECC
Q 012817          344 QNNIIHPSA--ELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-------------------NSVVMN  402 (456)
Q Consensus       344 ~~~~i~~~~--~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-------------------~s~i~~  402 (456)
                      ....|.+..  .++.++.||+++.|+.+|+|.+.   .+..||++|.||++|.|.                   +++|++
T Consensus        59 ~~~~I~~p~~~~~g~~v~IG~~~~i~~~~~i~~~---~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd  135 (185)
T 2p2o_A           59 ERLFIEPNFRCDYGYNIHVGENFFMNFDGVILDV---CEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGH  135 (185)
T ss_dssp             SCEEECSCEEESCSTTEEECTTEEECSSEEEECS---SCEEECTTCEECTTCEEECEECCSSHHHHHTCCBEECCEEECS
T ss_pred             CCcEEeccEEEEecCCEEECCeeEEcCCeEEEec---cceEECCCcEEeCCCEEEcCCCcCChhhcccCccccCCeEEcC
Confidence            345555543  33455555555555555555332   246899999999999994                   345666


Q ss_pred             CCEECCCcEEc-CeEECCCCEECCCcEecCeEECCCCEEC
Q 012817          403 HVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGYVVS  441 (456)
Q Consensus       403 ~~~ig~~~~i~-~~ii~~~~~I~~~~~i~~~~i~~~~~v~  441 (456)
                      +|.||.+|.|. ++.||++|+||+|++|... |+++++++
T Consensus       136 ~v~IG~~~~I~~gv~IG~~~vIgagsvV~~~-vp~~~vv~  174 (185)
T 2p2o_A          136 NVWIGGRAVINPGVTIGDNAVIASGAVVTKD-VPANAVVG  174 (185)
T ss_dssp             SCEECTTCEECTTCEECTTCEECTTCEECSC-BCTTEEEE
T ss_pred             CeEECCCCEECCCCEECCCCEECCCCEECCC-CCCCcEEE
Confidence            66666666664 6666666666666666543 44555443

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.10  E-value=4.5e-10  Score=101.79  Aligned_cols=95  Identities=19%  Similarity=0.259  Sum_probs=70.9

Q ss_pred             ceeCCCCEeCCCcEECC---CCEECCCCEECCCCeE----eeeEECCCCEECCCcEEeCe--------------------
Q 012817          346 NIIHPSAELGSKTTVGP---HCMLGEGSQMGDKCSV----KRSVIGRHCRIGSNVKVVNS--------------------  398 (456)
Q Consensus       346 ~~i~~~~~i~~~~~i~~---~~~i~~~~~I~~~~~i----~~s~Ig~~~~ig~~~~i~~s--------------------  398 (456)
                      ..|++.+.|++++.+..   ++.||++|.|++.+.+    .+++||++|.|+++|.|.++                    
T Consensus        59 v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~~~~~h~~~~~~~~~~~~~~~~v  138 (215)
T 2wlg_A           59 LFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGKDV  138 (215)
T ss_dssp             EEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEEEESCCSSCEEETTTCBBCCCCCCE
T ss_pred             EEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEECCCCcccccccccccccCCCCe
Confidence            56666666666666642   4788888888884444    56899999999999999863                    


Q ss_pred             EECCCCEECCCcEEc-CeEECCCCEECCCcEecCeEECCCCEEC
Q 012817          399 VVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGYVVS  441 (456)
Q Consensus       399 ~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~~~~i~~~~~v~  441 (456)
                      +|+++|.||.++.|. ++.|+++|.|++++++.+. |.+++++.
T Consensus       139 ~Igd~v~IG~~~~I~~gv~Ig~~~vIgagsvV~~~-vp~~~i~~  181 (215)
T 2wlg_A          139 IIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLYKS-FKEPNCVI  181 (215)
T ss_dssp             EECTTCEECTTCEECTTCEECSSCEECTTCEECSC-CCCCSCEE
T ss_pred             EECCCcEECCCCEECCCCEECCCCEECCCCEEcCc-cCCCeEEE
Confidence            788888888888775 7888888888888877654 46666655

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=99.10  E-value=3.7e-10  Score=106.69  Aligned_cols=92  Identities=13%  Similarity=0.294  Sum_probs=41.2

Q ss_pred             CCCCEeCCCcEECCCCEE--CCCCEECCCCeEeeeEECCCCEECCCcEEeCeE-ECCCCEECCC--cEEcCeEECCCCEE
Q 012817          349 HPSAELGSKTTVGPHCML--GEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSV-VMNHVTIGDG--CSIQGSVICSNAQL  423 (456)
Q Consensus       349 ~~~~~i~~~~~i~~~~~i--~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~-i~~~~~ig~~--~~i~~~ii~~~~~I  423 (456)
                      ..++.|++++.||+++.|  +.+++||+++     +||++|.|+++|+|++.. ..+..  |..  ..-..++||++|.|
T Consensus       188 ~~gv~I~p~a~IG~~v~I~hg~gvvIG~~~-----~IG~~v~I~~gvtIg~~~~~~~~~--g~~i~~~~~~~~IGd~V~I  260 (310)
T 3f1x_A          188 ETGIDIHPGAQIGHHFTIDHGTGVVIGATS-----IIGNNVKLYQGVTLGAKSFPLDNN--GNPIKGIPRHPILEDDVIV  260 (310)
T ss_dssp             HHSCEECTTCEECSSCEEESCTTCEECTTC-----EECSSCEEETTCEEECC----------------CCSCEECTTCEE
T ss_pred             cCCcEECCCCEECCCcEECCCCCeEECCce-----EEcCCCEECCCCEECCCccccccc--cccccCCCCCCEECCCcEE
Confidence            344455555555444444  3444444333     555555555555555221 11000  000  00123455555555


Q ss_pred             CCCcEec-CeEECCCCEECCCcEEc
Q 012817          424 QERVALK-DCQVGQGYVVSAGCEYK  447 (456)
Q Consensus       424 ~~~~~i~-~~~i~~~~~v~~~~~~~  447 (456)
                      |++++|. +++||++++|++|+.+.
T Consensus       261 Gaga~Il~gv~IGd~a~IGagsvV~  285 (310)
T 3f1x_A          261 YSNATILGRVTIGKGATVGGNIWVT  285 (310)
T ss_dssp             CTTCEEESSCEECTTCEECSSCEEC
T ss_pred             cCCCEECCCcEECCCCEECCCCEEC
Confidence            5555543 55666666666665554

>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*

Probab=99.08  E-value=3.4e-09  Score=106.74  Aligned_cols=193  Identities=11%  Similarity=0.147  Sum_probs=118.1

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccC---CcchHHHHHHHHHHC--------C------CCEEEEEecCchhhHH
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELS--------N------IKDLIVVVEGADAALR   64 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~---gkpli~~~l~~l~~~--------g------i~~v~iv~~~~~~~~~   64 (456)
                      ++.+|+||||.|+||    +...||+|+|++   |||++++.++++...        |      +..+++.+.+.  .+.
T Consensus       103 kvavvlLaGG~GTRL----g~~~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t--~~~  176 (486)
T 2yqc_A          103 EVAVLLMAGGQGTRL----GSSAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPT--RNA  176 (486)
T ss_dssp             CEEEEEEEESBCGGG----TCSSBGGGCBCCCTTCCBHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGG--HHH
T ss_pred             CeEEEEEcCCccccC----CCCCCCccceecCCCCCcHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCC--HHH
Confidence            478999999999999    788999999999   999999999999875        5      55555555433  345


Q ss_pred             HHhhhhhh--cc-CccceEEEEcc----------------------CCcChHHHHHHHHh-----cC---CCCcEEEEcC
Q 012817           65 VGGWISAA--YV-DRLHVEVATVP----------------------EDVGTAGALRAIAH-----HL---TAKDVLVVSG  111 (456)
Q Consensus        65 i~~~~~~~--~~-~~~~i~~~~~~----------------------~~~gt~~al~~~~~-----~l---~~~~~lv~~~  111 (456)
                      +++++.+.  +. ..-.+.+..|.                      .+.|+++....+.+     .+   .-+++.+...
T Consensus       177 t~~~~~~~~~fgl~~~~v~~f~Q~~~P~i~~dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~v  256 (486)
T 2yqc_A          177 TESFFIENNYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCV  256 (486)
T ss_dssp             HHHHHHHTGGGGSCGGGEEEEECCEEECBCTTSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEET
T ss_pred             HHHHHhhccccCCCcceEEEEecccceeEcCCCCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEECC
Confidence            66666542  21 11123222211                      24578776654422     11   2356777777


Q ss_pred             C-ccc-CCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCCcccEEEecC-CCc-EEEEeecccccccc
Q 012817          112 D-LVS-DVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDP-TKQ-FLLHIATGAELEKD  187 (456)
Q Consensus       112 D-~i~-~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~d~-~~~-~l~~~~~~~~~~k~  187 (456)
                      | ++. ..| ..++..|.+.++++++.+.+...  +              ....|++.... +++ .++.+.+.+.    
T Consensus       257 DN~l~~~~D-p~~lg~~~~~~~~~~~~vv~k~~--~--------------~e~~Gvl~~~~~dg~~~vvEy~E~~~----  315 (486)
T 2yqc_A          257 DNCLVKVAD-PIFIGFAIAKKFDLATKVVRKRD--A--------------NESVGLIVLDQDNQKPCVIEYSEISQ----  315 (486)
T ss_dssp             TBTTCCTTC-HHHHHHHHHHTCSEEEEEEECCS--T--------------TCCCCEEEEETTTTEEEEECGGGSCH----
T ss_pred             CCceeeccC-HHHHHHHHHcCCCEEEEEEEcCC--C--------------CCceeEEEEEecCCCEEEEEEecCCH----
Confidence            7 333 334 35788999999999887665421  1              23567776542 444 3444433211    


Q ss_pred             cccchHHHhhcce--eEEecCCccceEEeechHHHHHHHh
Q 012817          188 TRIRKSILRAVGQ--MDIRADLMDAHMYAFNRSVLQEVLD  225 (456)
Q Consensus       188 ~~~~~~~~~~~~~--~~~~~~~~~~giYi~~~~vl~~~~~  225 (456)
                       ....   ...+.  -....+..|+++|+|+.++|...+.
T Consensus       316 -~~~~---~~~~~~~~~~~~~~~Ni~~~~~~l~~L~~~l~  351 (486)
T 2yqc_A          316 -ELAN---KKDPQDSSKLFLRAANIVNHYYSVEFLNKMIP  351 (486)
T ss_dssp             -HHHH---CEETTEEEEESSCEEEEEEEEEEHHHHHHHHH
T ss_pred             -HHhh---cccccccccccccceeEEEEEEeHHHHHHHHH
Confidence             0000   00010  1234567899999999999987443

>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}

Probab=99.08  E-value=4.6e-09  Score=102.32  Aligned_cols=192  Identities=9%  Similarity=0.115  Sum_probs=119.7

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCccccccc---CCcchHHHHHHHHHH-------------CCCCEEEEEecCchhhHHH
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPV---ANRPVLSYVLEQLEL-------------SNIKDLIVVVEGADAALRV   65 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi---~gkpli~~~l~~l~~-------------~gi~~v~iv~~~~~~~~~i   65 (456)
                      ++-+|+||||.|+||    +...||+|+|+   .|||++++.++++.+             .++.-+ |.+.... .+.+
T Consensus        35 kvavvlLAGG~GTRL----G~~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~-IMtS~~t-~e~t  108 (405)
T 3oc9_A           35 KTALITPAGGQGSRL----GFEHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIHWF-LMTNEET-IEEI  108 (405)
T ss_dssp             CEEEEEECCSBCTTT----TCCSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEE-EEECTTT-HHHH
T ss_pred             ceEEEEecCCCcccc----cCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCCEE-EEeCCcc-HHHH
Confidence            456899999999999    77899999999   899999999988854             345544 4444332 3467


Q ss_pred             Hhhhhhhc--c-CccceEEEEc---------------------cCCcChHHHHHHHHhc-----C---CCCcEEEEcCCc
Q 012817           66 GGWISAAY--V-DRLHVEVATV---------------------PEDVGTAGALRAIAHH-----L---TAKDVLVVSGDL  113 (456)
Q Consensus        66 ~~~~~~~~--~-~~~~i~~~~~---------------------~~~~gt~~al~~~~~~-----l---~~~~~lv~~~D~  113 (456)
                      .+++.+..  . +.-++.+..|                     ..+.|.++....+...     +   .-+++.+...|.
T Consensus       109 ~~~f~~~~~fGl~~~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~nvDN  188 (405)
T 3oc9_A          109 NNYFKEHQYFGLSSEQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDN  188 (405)
T ss_dssp             HHHHHHTGGGGSCTTSEEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEECTTB
T ss_pred             HHHHHhCcccCCCccceEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEeCCC
Confidence            77775422  1 1112433321                     1235777665543221     1   235788888897


Q ss_pred             -ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCCcccEEEecCCCcEEEEeecccccccccccch
Q 012817          114 -VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRK  192 (456)
Q Consensus       114 -i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~  192 (456)
                       +.......++.+|.+.++++++-+.+...  |              ....|++........++.+.+.+.. ...    
T Consensus       189 ~L~~~~Dp~~lg~~~~~~~d~~~kvv~k~~--~--------------dek~Gvl~~~dg~~~vvEysei~~e-~e~----  247 (405)
T 3oc9_A          189 ILCKDVDPNMIGYMDLLQSEICIKIVKKGF--K--------------EEKVGVLVKEQERIKVVEYTELTDE-LNK----  247 (405)
T ss_dssp             TTCCSSCHHHHHHHHHTTCSEEEEEEECCS--T--------------TCSCCEEEEETTEEEEECGGGCCTT-TTC----
T ss_pred             cccccCCHHHHHHHHHcCCCEEEEEEECCC--C--------------CCccceEEEECCeeEEEEEeeCCHH-Hhh----
Confidence             88888888999999999999877765432  1              1356777643222234444432221 100    


Q ss_pred             HHHhhcceeEEecCCccceEEeechHHHHHHH
Q 012817          193 SILRAVGQMDIRADLMDAHMYAFNRSVLQEVL  224 (456)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~  224 (456)
                          +.+.-....+..|.++++|+.++|+.+.
T Consensus       248 ----~~~~g~l~fn~~Ni~~h~fs~~fL~~i~  275 (405)
T 3oc9_A          248 ----QLSNGEFIYNCGHISINGYSTSFLEKAA  275 (405)
T ss_dssp             ----BCTTSCBSSCEEEEEEEEEEHHHHHHHT
T ss_pred             ----cCCCCceeeccceeEeeecCHHHHHHhh
Confidence                0000111234567889999999998875

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=99.05  E-value=8.1e-10  Score=100.38  Aligned_cols=27  Identities=22%  Similarity=0.405  Sum_probs=18.1

Q ss_pred             CCEECCCCeEee-eEECCCCEECCCcEE
Q 012817          369 GSQMGDKCSVKR-SVIGRHCRIGSNVKV  395 (456)
Q Consensus       369 ~~~I~~~~~i~~-s~Ig~~~~ig~~~~i  395 (456)
                      +|.|++++.|++ ++||++|.|+++++|
T Consensus        54 ~~vI~~~~~Ig~~v~IG~~~~Ig~~v~i   81 (220)
T 4hur_A           54 DQVLYHYEVIGDKLIIGRFCSIGPGTTF   81 (220)
T ss_dssp             GGEESCCTTTCCCEEECSSCEECTTCEE
T ss_pred             CeEEeCCCEECCCeEECCCCEECCCCEE
Confidence            566666665554 577777777777775

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=99.04  E-value=5e-10  Score=108.13  Aligned_cols=54  Identities=20%  Similarity=0.266  Sum_probs=36.9

Q ss_pred             ccCCCceeCCCCEeCCCcEECCC-CEECCCCE-ECCCCeEeeeEECCCCEECCCcEEe
Q 012817          341 FSAQNNIIHPSAELGSKTTVGPH-CMLGEGSQ-MGDKCSVKRSVIGRHCRIGSNVKVV  396 (456)
Q Consensus       341 ~~~~~~~i~~~~~i~~~~~i~~~-~~i~~~~~-I~~~~~i~~s~Ig~~~~ig~~~~i~  396 (456)
                      .+++.+.|.+++.|++++.|+++ +.|+.++. ||+ |.|.. .|+++|.||++|.|+
T Consensus       219 ~I~p~a~I~~~a~IG~gv~Ig~g~a~Ig~nv~vIG~-~~I~~-~Ig~~vvIGdnv~Ig  274 (387)
T 2rij_A          219 RILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGA-CMVEG-RISSSAIVGEGSDVG  274 (387)
T ss_dssp             EESCGGGBBTTCBCCTTCEECSSSCEECTTCEESSC-CEECS-EECTTCEECTTCEEC
T ss_pred             EEcCCCEECCCeEEcCCCEEeCCeeEECCCcEEECC-EEEee-EECCCCEECCCCEEC
Confidence            45567777788888888888875 88888887 777 66643 555555555555555

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=99.04  E-value=2e-09  Score=99.70  Aligned_cols=85  Identities=22%  Similarity=0.268  Sum_probs=52.6

Q ss_pred             CceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeC---------eEECCCCEECCCcEEc-C
Q 012817          345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVN---------SVVMNHVTIGDGCSIQ-G  414 (456)
Q Consensus       345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~---------s~i~~~~~ig~~~~i~-~  414 (456)
                      ...|+|++.||+++.|+.+    .+++||++|     +||++|.|+++++|++         ++|+++|.||.++.|. +
T Consensus       137 g~~I~p~a~IG~g~~I~~~----~~vvIG~~~-----~IG~~v~I~~gvtig~~~~~~~~~~~~IGd~v~IGaga~Il~g  207 (267)
T 1ssq_A          137 DVDIHPAAKIGHGIMFDHA----TGIVVGETS-----VIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGN  207 (267)
T ss_dssp             SCEECTTCEECSSCEESSC----TTCEECTTC-----EECTTCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESS
T ss_pred             ceEeCCCCEECCCEEECCC----CceEECCee-----EECCCCEEcCCcEECCCcccCCCCCeEECCCeEEcCCCEEeCC
Confidence            4556666666665555531    233333333     4444444455555543         5788888888888885 7


Q ss_pred             eEECCCCEECCCcEecCeEECCCCE
Q 012817          415 SVICSNAQLQERVALKDCQVGQGYV  439 (456)
Q Consensus       415 ~ii~~~~~I~~~~~i~~~~i~~~~~  439 (456)
                      ++||++|+||+|++|... |.++++
T Consensus       208 v~IG~~a~IGagsvV~~d-Vp~~~~  231 (267)
T 1ssq_A          208 IEVGKYAKIGANSVVLNP-VPEYAT  231 (267)
T ss_dssp             CEECTTCEECTTCEECSC-BCTTCE
T ss_pred             cEECCCCEECCCCEEccC-CCCCCE
Confidence            888888888888887654 344443

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=99.04  E-value=2.9e-10  Score=103.35  Aligned_cols=33  Identities=15%  Similarity=0.297  Sum_probs=16.6

Q ss_pred             eEECCCCEECCCcEec-CeEECCCCEECCCcEEc
Q 012817          415 SVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK  447 (456)
Q Consensus       415 ~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~  447 (456)
                      ++||++|.||++++|. +++||++++|++++.+.
T Consensus       120 v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~  153 (220)
T 4hur_A          120 IEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVT  153 (220)
T ss_dssp             EEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             eEECCCcEECCCCEEeCCCEECCCCEEcCCCEEc
Confidence            4455555555555443 45555555555555443

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.04  E-value=7.7e-10  Score=98.53  Aligned_cols=91  Identities=13%  Similarity=0.085  Sum_probs=51.6

Q ss_pred             cCCCceeCCCCEeCCCcEEC--CCCEECCCCEECCCCeEee-eEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-CeE
Q 012817          342 SAQNNIIHPSAELGSKTTVG--PHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSV  416 (456)
Q Consensus       342 ~~~~~~i~~~~~i~~~~~i~--~~~~i~~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~~i  416 (456)
                      ++.+..|++++.|++++.|.  ..+.||++|.|+++|.|.. +...+.+....++.+. +++|+++|.||.+|.|. ++.
T Consensus        73 ig~~v~IG~~~~I~~~~~i~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~  152 (195)
T 3nz2_A           73 FGKTIRIGDHTFINMNVVMLDGAPITIGDHVLIGPSTQFYTASHSLDYRRRQAWETICKPIVIEDDVWIGGNVVINQGVT  152 (195)
T ss_dssp             CSTTEEECTTCEECTTEEEECSSCEEECTTCEECTTCEEECEECCSSGGGTTTCCCEECCEEECTTCEECTTCEECTTCE
T ss_pred             eCCCeEECCCcEECcCCEEecCceEEECCCCEECCCCEEecCCCCcccccccccceecCCeEECCCCEEcCCCEECCCCE
Confidence            34455555555555555552  2345666666666665553 3333333333444444 55666777777776664 667


Q ss_pred             ECCCCEECCCcEecCe
Q 012817          417 ICSNAQLQERVALKDC  432 (456)
Q Consensus       417 i~~~~~I~~~~~i~~~  432 (456)
                      ||++|+||++++|...
T Consensus       153 IG~~~vIgagsvV~~d  168 (195)
T 3nz2_A          153 IGARSVVAANSVVNQD  168 (195)
T ss_dssp             ECTTCEECTTCEECSC
T ss_pred             ECCCCEECCCCEEccc
Confidence            7777777777666544

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=99.04  E-value=4e-10  Score=113.96  Aligned_cols=95  Identities=21%  Similarity=0.268  Sum_probs=78.2

Q ss_pred             eeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCC------
Q 012817          347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSN------  420 (456)
Q Consensus       347 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~------  420 (456)
                      +++|.+.|++++.|+      +++.| .++.|.++.||++|.|+. +.|.+++|+++|.||++|.|.++++..+      
T Consensus       304 ~~~~~~~i~~~~~i~------~~~~i-~~~~I~~~~Ig~~~~I~~-~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~  375 (451)
T 1yp2_A          304 FYDRSAPIYTQPRYL------PPSKM-LDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDSLLMGADYYETD  375 (451)
T ss_dssp             SCCSSSCCCCCCCCC------CCEEE-EEEEEEEEEECTTCEEEE-EEEESCEECTTCEECTTCEEESCEECCCSSCCCH
T ss_pred             ccCCCCeeccCCccC------CCeEE-cceEEeCeEECCCCEEcc-eEEeccEECCCCEECCCCEEcCceEECCCCcccc
Confidence            445555555555444      44444 456777789999999997 8999999999999999999998887777      


Q ss_pred             -------------CEECCCcEecCeEECCCCEECCCcEEcCC
Q 012817          421 -------------AQLQERVALKDCQVGQGYVVSAGCEYKGE  449 (456)
Q Consensus       421 -------------~~I~~~~~i~~~~i~~~~~v~~~~~~~~~  449 (456)
                                   +.||+++.|.+++||+++.||+++.+.+.
T Consensus       376 ~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig~~~~IG~~~~i~~~  417 (451)
T 1yp2_A          376 ADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINK  417 (451)
T ss_dssp             HHHHHHHTTTCCCSEECTTCEEESEEECTTCEECTTCEECCS
T ss_pred             cccccccccCceeEEECCCCEEeccEeCCCcEECCCCEEeCC
Confidence                         99999999999999999999999998875

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.03  E-value=7.1e-10  Score=98.38  Aligned_cols=88  Identities=15%  Similarity=0.091  Sum_probs=41.1

Q ss_pred             CCceeCCCCEeCCCcEECC--CCEECCCCEECCCCeEee-eEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-CeEEC
Q 012817          344 QNNIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVIC  418 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~~ii~  418 (456)
                      .+..|++.+.|++++.|.+  ++.||++|.|+++|.|.. +..++.+....++.+. +++|+++|.||.+|.|. ++.||
T Consensus        77 ~~v~IG~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG  156 (190)
T 3hjj_A           77 YNIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGGGAIINPGVSIG  156 (190)
T ss_dssp             TTEEECTTCEECTTCEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTSSEEEECCEEECTTCEECTTCEECTTCEEC
T ss_pred             CceEECCceeeCCCeEEEeCCCeEECCceEEcCCcEEecCCccCchhhccccccccCCeEECCCCEECCCCEECCCCEEC
Confidence            3444444444444444433  334555555555554432 2222222223333333 34455555555555554 55555


Q ss_pred             CCCEECCCcEecC
Q 012817          419 SNAQLQERVALKD  431 (456)
Q Consensus       419 ~~~~I~~~~~i~~  431 (456)
                      ++|+||++++|.+
T Consensus       157 ~~~vIgagsvV~~  169 (190)
T 3hjj_A          157 DNAVIASGAVVTK  169 (190)
T ss_dssp             TTCEECTTCEECS
T ss_pred             CCCEECCCCEECc
Confidence            5555555555543

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=99.01  E-value=2.9e-09  Score=99.50  Aligned_cols=90  Identities=19%  Similarity=0.242  Sum_probs=53.7

Q ss_pred             CceeCCCCEeCCCcEECC--CCEECCCCEECCCCeEeeeEECCCCEECCCcE---EeCeEECCCCEECCCcEEc-CeEEC
Q 012817          345 NNIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVK---VVNSVVMNHVTIGDGCSIQ-GSVIC  418 (456)
Q Consensus       345 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~---i~~s~i~~~~~ig~~~~i~-~~ii~  418 (456)
                      ...|+|++.||+++.|+.  ++.||++|+||++|     .|+.+|+||....   ..+++|+++|.||.++.|. ++.||
T Consensus       157 g~~I~p~a~IG~gv~I~~g~gvvIG~~~~IG~~v-----~I~~gvtLg~~~~~~~~~~~~IGd~v~IGaga~Ilggv~IG  231 (289)
T 1t3d_A          157 QVDIHPAAKIGRGIMLDHATGIVVGETAVIENDV-----SILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVG  231 (289)
T ss_dssp             SCEECTTCEECSSCEECSCTTCEECTTCEECSSC-----EECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEEC
T ss_pred             ceEEcCCCEEcCCEEECCCCceEECCCcEECCCC-----EEcCCcEECCCccccCCCCeEECCCeEECCCCEEecCcEEC
Confidence            456666666666666653  44444444444443     3333444333211   1136788888888888885 78888


Q ss_pred             CCCEECCCcEecCeEECCCCEE
Q 012817          419 SNAQLQERVALKDCQVGQGYVV  440 (456)
Q Consensus       419 ~~~~I~~~~~i~~~~i~~~~~v  440 (456)
                      ++|+||+|++|... |.+++++
T Consensus       232 ~~a~IGagsvV~~d-Vp~~s~v  252 (289)
T 1t3d_A          232 RGAKIGAGSVVLQP-VPPHTTA  252 (289)
T ss_dssp             TTCEECTTCEECSC-BCTTCEE
T ss_pred             CCCEECCCCEEccC-CCCCCEE
Confidence            88888888877654 3444443

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.01  E-value=1.4e-09  Score=96.30  Aligned_cols=36  Identities=19%  Similarity=0.266  Sum_probs=21.5

Q ss_pred             CeEECCCCEECCCcEec-CeEECCCCEECCCcEEcCC
Q 012817          414 GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGE  449 (456)
Q Consensus       414 ~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~~  449 (456)
                      .++||++|.||.+++|. +++||++++|++|+.+...
T Consensus       132 ~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d  168 (188)
T 3srt_A          132 PVKIGDNVWIGGGVIITPGITIGDNVVIGAGSVVTKD  168 (188)
T ss_dssp             CEEECSSCEECTTCEECTTCEECSSEEECTTCEECSC
T ss_pred             CcEECCCcEEcCCCEECCCcEECCCCEECCCCEECcc
Confidence            45566666666666553 5666666666666665543

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.00  E-value=1.2e-09  Score=97.70  Aligned_cols=34  Identities=12%  Similarity=0.250  Sum_probs=13.7

Q ss_pred             CceeCCCCEeCCCcEEC--CCCEECCCCEECCCCeE
Q 012817          345 NNIIHPSAELGSKTTVG--PHCMLGEGSQMGDKCSV  378 (456)
Q Consensus       345 ~~~i~~~~~i~~~~~i~--~~~~i~~~~~I~~~~~i  378 (456)
                      +..|++++.|++++.|.  ..+.||++|.|+++|.|
T Consensus        74 ~~~IG~~~~I~~~~~i~~~~~v~IG~~v~Ig~~~~I  109 (199)
T 3ftt_A           74 NVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGF  109 (199)
T ss_dssp             TEEECSSEEECTTEEEECSSCEEECSSEEECTTCEE
T ss_pred             CcEECCCeEECCCeEEecCCEEEECCCCEECCCCEE
Confidence            33344444444444432  12344444444444444

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=98.95  E-value=1.8e-09  Score=99.93  Aligned_cols=73  Identities=14%  Similarity=0.147  Sum_probs=46.1

Q ss_pred             ccCCCceeCCCCEeC--CCcEECCCCEECCCCEECCCCeEee---------eEECCCCEECCCcEEe-CeEECCCCEECC
Q 012817          341 FSAQNNIIHPSAELG--SKTTVGPHCMLGEGSQMGDKCSVKR---------SVIGRHCRIGSNVKVV-NSVVMNHVTIGD  408 (456)
Q Consensus       341 ~~~~~~~i~~~~~i~--~~~~i~~~~~i~~~~~I~~~~~i~~---------s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~  408 (456)
                      .+++.+.|++++.|+  .++.||++|.||++|.|+.+++|+.         ++||++|.||.+++|. +++|+++|.||.
T Consensus       139 ~I~p~a~IG~g~~I~~~~~vvIG~~~~IG~~v~I~~gvtig~~~~~~~~~~~~IGd~v~IGaga~Il~gv~IG~~a~IGa  218 (267)
T 1ssq_A          139 DIHPAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYAKIGA  218 (267)
T ss_dssp             EECTTCEECSSCEESSCTTCEECTTCEECTTCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTTCEECT
T ss_pred             EeCCCCEECCCEEECCCCceEECCeeEECCCCEEcCCcEECCCcccCCCCCeEECCCeEEcCCCEEeCCcEECCCCEECC
Confidence            345666777777776  4667777777777777777777764         3566666666666654 444555555555


Q ss_pred             CcEEc
Q 012817          409 GCSIQ  413 (456)
Q Consensus       409 ~~~i~  413 (456)
                      +++|.
T Consensus       219 gsvV~  223 (267)
T 1ssq_A          219 NSVVL  223 (267)
T ss_dssp             TCEEC
T ss_pred             CCEEc
Confidence            55554

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=98.92  E-value=2.6e-09  Score=99.82  Aligned_cols=30  Identities=10%  Similarity=0.101  Sum_probs=25.1

Q ss_pred             CCCCcEE--EEcCCcccCCChhHHHHHHHhcC
Q 012817          101 LTAKDVL--VVSGDLVSDVPPGAVTAAHRRHD  130 (456)
Q Consensus       101 l~~~~~l--v~~~D~i~~~~l~~~l~~~~~~~  130 (456)
                      ...|++|  ++++|.+...+|.+.+.+|...+
T Consensus        37 ~~~EP~L~~~l~~~IL~~~~l~~aLa~~La~k   68 (289)
T 1t3d_A           37 ADCEPMLASFYHATLLKHENLGSALSYMLANK   68 (289)
T ss_dssp             HHHCGGGHHHHHHHTTTCSSHHHHHHHHHHHH
T ss_pred             HhcCCHHHHHhcccccCCCCHHHHHHHHHhcc
Confidence            4457888  88999999999999999987753

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=98.90  E-value=1.1e-08  Score=91.35  Aligned_cols=96  Identities=15%  Similarity=0.087  Sum_probs=49.6

Q ss_pred             CCCceeCCCCEeCCCcEECC--CCEECCCCEECCCCeEeee-EECCCCEECCCcEEe-CeEECCCCEECCCcEEc-CeEE
Q 012817          343 AQNNIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRS-VIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVI  417 (456)
Q Consensus       343 ~~~~~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~i~~s-~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~~ii  417 (456)
                      +.+..|++++.|+.++.|..  .+.||++|.|+++|.|..+ ...+......+..+. +++|+++|.||.+|.|. ++.|
T Consensus        73 g~~i~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~I  152 (203)
T 1krr_A           73 GSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTI  152 (203)
T ss_dssp             STTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTTCEE
T ss_pred             CCCeEECCeeEECCccEEecccceEECCCCEECCCCEEecCCcccchhhcccCceeCCCcEECCCeEECCCCEEeCCeEE
Confidence            34445555555555544432  2556666666666665431 111111112222233 45566666666666664 6666


Q ss_pred             CCCCEECCCcEecCeEECCCCE
Q 012817          418 CSNAQLQERVALKDCQVGQGYV  439 (456)
Q Consensus       418 ~~~~~I~~~~~i~~~~i~~~~~  439 (456)
                      |++|+||+|++|... |.++++
T Consensus       153 G~~~vIgagsvV~~d-vp~~~v  173 (203)
T 1krr_A          153 GDNSVIGAGSIVTKD-IPPNVV  173 (203)
T ss_dssp             CTTCEECTTCEECSC-BCTTEE
T ss_pred             CCCCEECCCCEECCC-cCCCcE
Confidence            666666666666543 344444

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=98.89  E-value=3.7e-09  Score=92.81  Aligned_cols=15  Identities=7%  Similarity=0.295  Sum_probs=6.6

Q ss_pred             CEECCCCEECCCCeE
Q 012817          364 CMLGEGSQMGDKCSV  378 (456)
Q Consensus       364 ~~i~~~~~I~~~~~i  378 (456)
                      +.||++|.|+++|.|
T Consensus        93 i~IG~~v~Ig~~v~I  107 (182)
T 1ocx_A           93 IRIGDNCMLAPGVHI  107 (182)
T ss_dssp             EEECTTCEECTTCEE
T ss_pred             eEEcCCcEEeCCcEE
Confidence            334444444444444

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=98.83  E-value=1.7e-08  Score=88.79  Aligned_cols=35  Identities=9%  Similarity=0.055  Sum_probs=15.7

Q ss_pred             CCceeCCCCEeCCCcEEC--CCCEECCCCEECCCCeE
Q 012817          344 QNNIIHPSAELGSKTTVG--PHCMLGEGSQMGDKCSV  378 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i~--~~~~i~~~~~I~~~~~i  378 (456)
                      .+..|++.+.|++++.|.  .++.||++|.|+++|.|
T Consensus        73 ~~v~IG~~~~i~~~~~i~~~~~i~IG~~v~Ig~~v~I  109 (185)
T 2p2o_A           73 YNIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHI  109 (185)
T ss_dssp             TTEEECTTEEECSSEEEECSSCEEECTTCEECTTCEE
T ss_pred             CCEEECCeeEEcCCeEEEeccceEECCCcEEeCCCEE
Confidence            334444444444444332  33445555555555544

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=98.76  E-value=7.9e-09  Score=93.28  Aligned_cols=33  Identities=24%  Similarity=0.332  Sum_probs=14.9

Q ss_pred             eEECCCCEECCCcEEc-CeEECCCCEECCCcEec
Q 012817          398 SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK  430 (456)
Q Consensus       398 s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~  430 (456)
                      ++|+++|.||.+|.|. ++.||++|+||++++|.
T Consensus       112 v~IG~~v~IG~~a~I~~gv~IG~~~iIgagsvV~  145 (212)
T 3eev_A          112 TIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVT  145 (212)
T ss_dssp             EEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             eEECCCCEECCCCEEcCCCEECCCCEECCCCEEc
Confidence            3444444444444443 44444444444444443

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=98.72  E-value=2.7e-08  Score=89.81  Aligned_cols=35  Identities=14%  Similarity=0.270  Sum_probs=22.5

Q ss_pred             CeEECCCCEECCCcEec-CeEECCCCEECCCcEEcC
Q 012817          414 GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       414 ~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~  448 (456)
                      +++||++|.||.+++|. ++.||++++|++++.+..
T Consensus       118 ~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~  153 (219)
T 4e8l_A          118 DIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTK  153 (219)
T ss_dssp             CEEECSSCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             CcEECCCeEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence            56666666666666554 566666666666666543

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=98.71  E-value=3.1e-08  Score=89.44  Aligned_cols=33  Identities=24%  Similarity=0.277  Sum_probs=16.9

Q ss_pred             eEECCCCEECCCcEEc-CeEECCCCEECCCcEec
Q 012817          398 SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK  430 (456)
Q Consensus       398 s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~  430 (456)
                      ++|+++|.||.+|.|. ++.||+++.|+++++|.
T Consensus       119 v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~  152 (219)
T 4e8l_A          119 IEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVT  152 (219)
T ss_dssp             EEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             cEECCCeEECCCCEEcCCCEECCCCEECCCCEEc
Confidence            4455555555555553 45555555555555444

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=98.71  E-value=3.7e-08  Score=88.82  Aligned_cols=15  Identities=47%  Similarity=0.769  Sum_probs=7.7

Q ss_pred             eEECCCCEECCCcEE
Q 012817          381 SVIGRHCRIGSNVKV  395 (456)
Q Consensus       381 s~Ig~~~~ig~~~~i  395 (456)
                      ..||++|.|+++|.|
T Consensus        59 v~IG~~~~I~~~v~i   73 (212)
T 3eev_A           59 LVIGSFCSIGSGAVF   73 (212)
T ss_dssp             EEECSSCEECTTCEE
T ss_pred             cEECCCCEECCCCEE
Confidence            355555555555544

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=98.62  E-value=7.3e-08  Score=86.49  Aligned_cols=35  Identities=14%  Similarity=0.314  Sum_probs=19.7

Q ss_pred             CeEECCCCEECCCcEec-CeEECCCCEECCCcEEcC
Q 012817          414 GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       414 ~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~  448 (456)
                      .++||++|.||.+++|. +++||++++|++++.+..
T Consensus       110 ~v~IG~~v~IG~~a~I~~gv~Ig~~~~IgagsvV~~  145 (212)
T 1xat_A          110 DTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTG  145 (212)
T ss_dssp             CEEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             CeEECCCCEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence            45566666666655543 555566666655555543

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=98.62  E-value=2.4e-08  Score=89.58  Aligned_cols=33  Identities=24%  Similarity=0.304  Sum_probs=15.9

Q ss_pred             eEECCCCEECCCcEEc-CeEECCCCEECCCcEec
Q 012817          398 SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK  430 (456)
Q Consensus       398 s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~  430 (456)
                      ++|+++|.||.++.|. ++.||+++.|++++++.
T Consensus       114 v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V~  147 (209)
T 1mr7_A          114 TIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVV  147 (209)
T ss_dssp             EEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             cEECCCCEEcCCCEEcCCCEECCCCEEcCCCEEc
Confidence            4444555555544443 44455555555444443

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=98.49  E-value=7.5e-08  Score=86.35  Aligned_cols=35  Identities=17%  Similarity=0.345  Sum_probs=23.8

Q ss_pred             CeEECCCCEECCCcEec-CeEECCCCEECCCcEEcC
Q 012817          414 GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       414 ~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~  448 (456)
                      +++||++|.||.+++|. ++.||++++|++++.+..
T Consensus       113 ~v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V~~  148 (209)
T 1mr7_A          113 DTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVK  148 (209)
T ss_dssp             CEEECSSCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             CcEECCCCEEcCCCEEcCCCEECCCCEEcCCCEEcC
Confidence            56677777777777664 577777777777766654

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=98.36  E-value=1.1e-06  Score=78.72  Aligned_cols=43  Identities=19%  Similarity=0.219  Sum_probs=24.0

Q ss_pred             CeEECCCCEECCCcEEc-CeEECCCCEECCCcEecCeEECCCCEE
Q 012817          397 NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGYVV  440 (456)
Q Consensus       397 ~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~~~~i~~~~~v  440 (456)
                      .++|+++|.||.+|.|. ++.||++|.||+++++... |.+++++
T Consensus       110 ~v~IG~~v~IG~~a~I~~gv~Ig~~~~IgagsvV~~~-vp~~~~~  153 (212)
T 1xat_A          110 DTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGD-VEPYAIV  153 (212)
T ss_dssp             CEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC-BCTTEEE
T ss_pred             CeEECCCCEECCCCEEeCCCEECCCCEECCCCEEccc-CCCCcEE
Confidence            35566666666666664 5666666666666655543 3444433

>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A

Probab=97.88  E-value=0.0012  Score=66.11  Aligned_cols=65  Identities=22%  Similarity=0.279  Sum_probs=48.0

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccC-CcchHHHHHHHHHHC----CC-CEEEEEecCchhhHHHHhhhhh
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLELS----NI-KDLIVVVEGADAALRVGGWISA   71 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~-gkpli~~~l~~l~~~----gi-~~v~iv~~~~~~~~~i~~~~~~   71 (456)
                      ++-+|+||||.|+||    +...||.++|+. |+++++..++++...    |. --.+|.++... .+...+++.+
T Consensus       127 kvavvlLaGGlGTRL----G~~~PK~~i~V~sgktflql~~eqI~~l~~~~g~~IPl~IMTS~~T-~~~T~~~f~k  197 (528)
T 3r3i_A          127 KLVVVKLNGGLGTSM----GCKGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLMNSFNT-DEDTKKILQK  197 (528)
T ss_dssp             TEEEEEECCCBCTTT----TCSSBGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTT-HHHHHSSCGG
T ss_pred             ceEEEEeCCCCcccc----CCCCCccceecCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEeccch-hHHHHHHHHh
Confidence            356799999999999    888999999996 899999999998654    42 24455555432 3456666654

>2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21

Probab=97.64  E-value=6.6e-05  Score=67.23  Aligned_cols=104  Identities=17%  Similarity=0.176  Sum_probs=74.0

Q ss_pred             CceEEEEe--cCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEE-EEEecCchhhHHHHhhhhhhccCccc
Q 012817            2 DFQVVVLA--GGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDL-IVVVEGADAALRVGGWISAAYVDRLH   78 (456)
Q Consensus         2 ~~~aiIla--gG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v-~iv~~~~~~~~~i~~~~~~~~~~~~~   78 (456)
                      +|.+||++  |...|||.|.    .........++||++|+++.+..++++.+ ++++++..    ...+        +.
T Consensus         3 ~~~~vip~k~g~~KtRL~~~----l~~~~~~~l~~~ll~~vl~~l~~~~~~~v~vvv~~~~~----~~~~--------~~   66 (211)
T 2i5e_A            3 AMRAVIPYKKAGAKSRLSPV----LSLQEREEFVELMLNQVISSLKGAGIEQVDILSPSVYG----LEEM--------TE   66 (211)
T ss_dssp             CCEEEEECCCTTTTGGGTTT----SCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEESSCTT----CSSC--------CS
T ss_pred             ceEEEEEeCCCCCccccCcc----CCHHHHHHHHHHHHHHHHHHHHHcCCceEEEEEcCcHH----HHhh--------cC
Confidence            47899999  7777888432    23333346679999999999999988888 88876432    1111        23


Q ss_pred             eEEEEccCCcChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHH
Q 012817           79 VEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTA  124 (456)
Q Consensus        79 i~~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~  124 (456)
                      +.++.++  .|.+++++.+.+.+ .+.++++.||  ++....++.+++
T Consensus        67 ~~~v~~~--~gl~~sl~~a~~~~-~~~vlvi~~D~P~l~~~~i~~l~~  111 (211)
T 2i5e_A           67 ARVLLDE--KDLNEALNRYLKEA-EEPVLIVMADLPLLSPEHIKEISS  111 (211)
T ss_dssp             SEEEECC--SCHHHHHHHHHHHC-CSCEEEECSCCTTCCHHHHHHHTT
T ss_pred             CEEEECC--CCHHHHHHHHHHhc-CCCEEEEcCCcCCCCHHHHHHHHc
Confidence            5555444  88899999988776 4789999999  566666777765

>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}

Probab=96.07  E-value=0.26  Score=48.87  Aligned_cols=133  Identities=15%  Similarity=0.132  Sum_probs=78.1

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCccccccc-CCcchHHHHHHHHHH----CCC-CEEEEEecCchhhHHHHhhhhhh--cc
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPV-ANRPVLSYVLEQLEL----SNI-KDLIVVVEGADAALRVGGWISAA--YV   74 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi-~gkpli~~~l~~l~~----~gi-~~v~iv~~~~~~~~~i~~~~~~~--~~   74 (456)
                      +-+|.||||.|+||    +...||.++|+ .|+++++..++++..    .+. --.+|.++... .+...+++.++  +.
T Consensus        77 vavvlLaGGlGTRL----G~~~pKg~~~v~sgksflql~~eqI~~l~~~~~~~iPl~IMTS~~T-~~~T~~~~~k~~~Fg  151 (484)
T 3gue_A           77 AVVLKLNGGLGTGM----GLNGPKSLLQVKNGQTFLDFTALQLEHFRQVRNCNVPFMLMNSFST-SGETKNFLRKYPTLY  151 (484)
T ss_dssp             EEEEEEECCCCGGG----TCSSCGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTT-HHHHHHHGGGCHHHH
T ss_pred             cEEEEEcCCccccc----CCCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCcch-hHHHHHHHHhCcccC
Confidence            45789999999999    88899999999 678999999888754    232 24566665432 23455555432  11


Q ss_pred             -CccceEEEEc-----------------cC------CcChHH---HHHHH--HhcC---CCCcEEEEcCCcccCCChhHH
Q 012817           75 -DRLHVEVATV-----------------PE------DVGTAG---ALRAI--AHHL---TAKDVLVVSGDLVSDVPPGAV  122 (456)
Q Consensus        75 -~~~~i~~~~~-----------------~~------~~gt~~---al~~~--~~~l---~~~~~lv~~~D~i~~~~l~~~  122 (456)
                       ..-.+.+..|                 ..      +.|.++   +|+..  ++.+   .-+++.+...|.+....=-.+
T Consensus       152 l~~~~v~~F~Q~~~P~i~~dg~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDNL~a~~Dp~~  231 (484)
T 3gue_A          152 EVFDSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLDVRL  231 (484)
T ss_dssp             TTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTCTTCCCCHHH
T ss_pred             CCccceEEEEeCceeeEecCCCceeecCCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCCcccccCHHH
Confidence             1001111111                 00      124333   22211  1222   235777778886544333457


Q ss_pred             HHHHHhcCceEEEEEeec
Q 012817          123 TAAHRRHDAVVTAMICSV  140 (456)
Q Consensus       123 l~~~~~~~a~~t~~~~~~  140 (456)
                      +-++.+.++++.+-+.+.
T Consensus       232 lG~~~~~~~d~~~kvv~K  249 (484)
T 3gue_A          232 LDYMHEKQLGFLMEVCRR  249 (484)
T ss_dssp             HHHHHHTTCSEEEEEEEC
T ss_pred             HHHHHhcCCCEEEEEEEC
Confidence            888888889877665543

>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*

Probab=95.69  E-value=0.0097  Score=60.69  Aligned_cols=64  Identities=22%  Similarity=0.283  Sum_probs=48.2

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccC---CcchHHHHHHHHHH-CCC-CEEEEEecCchhhHHHHhhhhh
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLEL-SNI-KDLIVVVEGADAALRVGGWISA   71 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~---gkpli~~~l~~l~~-~gi-~~v~iv~~~~~~~~~i~~~~~~   71 (456)
                      +-+|+||||.|+||    +...||.++|++   |++++++.++++.+ .|. --.+|.++... .+...+++.+
T Consensus       115 vavvllaGGlGTRL----G~~~pK~~lpv~~~s~ks~lql~~e~i~~~~g~~iPl~IMTS~~T-~~~T~~~~~~  183 (630)
T 3ogz_A          115 TVFVLVAGGLGERL----GYSSIKVSLPVETATNTTYLAYYLRWAQRVGGKEVPFVIMTSDDT-HDRTLQLLRE  183 (630)
T ss_dssp             EEEEEECCCEEGGG----TEEEEGGGSBSCTTTCCBHHHHHHHHHHHHHCTTCCEEEEECTTT-HHHHHHHHHH
T ss_pred             ceEEEecCCccccc----CCCCCcccceecCCCCCcHHHHHHHHHHHHhCCCCcEEEEecccc-hHHHHHHHHH
Confidence            45799999999999    888999999997   99999999999975 343 24556665432 3455666655

>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*

Probab=87.80  E-value=4.8  Score=35.75  Aligned_cols=93  Identities=8%  Similarity=0.016  Sum_probs=58.1

Q ss_pred             cchHHHHHHHHHHCCCC--EEEEEecCchhhHHHHhhhhhhccCccceEEEEcc--------CCcChHHHHHHHHhcCCC
Q 012817           34 RPVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVP--------EDVGTAGALRAIAHHLTA  103 (456)
Q Consensus        34 kpli~~~l~~l~~~gi~--~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~--------~~~gt~~al~~~~~~l~~  103 (456)
                      ...|..+|+.+.+....  +++|+-+...  +...+.+.+... ...+.++..+        ...|.+.+.-.+++....
T Consensus        13 ~~~l~~~l~Sl~~q~~~~~eiivvDd~S~--d~t~~~~~~~~~-~~~i~~i~~~~~~~~~~~~n~G~~~a~N~gi~~a~g   89 (255)
T 1qg8_A           13 SDYVAKSISSILSQTFSDFELFIMDDNSN--EETLNVIRPFLN-DNRVRFYQSDISGVKERTEKTRYAALINQAIEMAEG   89 (255)
T ss_dssp             TTTHHHHHHHHHTCSCCCEEEEEEECSCC--HHHHHHHGGGGG-STTEEEEECCCCSHHHHHSSCHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhccCCceEEEEEECCCC--chHHHHHHHHhh-cCCEEEEecccccccccccccCHHHHHHHHHHHcCC
Confidence            36788899998765433  5555543221  112222222111 2346777665        567888888778887777


Q ss_pred             CcEEEEcCCccc-CCChhHHHHHHHhc
Q 012817          104 KDVLVVSGDLVS-DVPPGAVTAAHRRH  129 (456)
Q Consensus       104 ~~~lv~~~D~i~-~~~l~~~l~~~~~~  129 (456)
                      +.++++.+|.+. +..+..+++.+.+.
T Consensus        90 ~~i~~lD~Dd~~~~~~l~~~~~~~~~~  116 (255)
T 1qg8_A           90 EYITYATDDNIYMPDRLLKMVRELDTH  116 (255)
T ss_dssp             SEEEEEETTEEECTTHHHHHHHHHHHC
T ss_pred             CEEEEeCCCCccChHHHHHHHHHHHhC
Confidence            789999999544 44588888887765

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}

Probab=85.37  E-value=2.5  Score=37.27  Aligned_cols=101  Identities=13%  Similarity=0.137  Sum_probs=62.8

Q ss_pred             cccCC-cchHHHHHHHHHHCCCC--EEEEEecCc-hh-hHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCCC
Q 012817           29 LPVAN-RPVLSYVLEQLELSNIK--DLIVVVEGA-DA-ALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA  103 (456)
Q Consensus        29 lpi~g-kpli~~~l~~l~~~gi~--~v~iv~~~~-~~-~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~~  103 (456)
                      +|.-+ ...|..+|+.+.+....  +++|+-+.. +. .+.++++....    ..+.++. .+..|.+.+.-.+++....
T Consensus        11 Ip~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~----~~i~~i~-~~n~G~~~a~N~g~~~a~g   85 (240)
T 3bcv_A           11 VPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQY----PNIKVIH-KKNAGLGMACNSGLDVATG   85 (240)
T ss_dssp             EEESSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHC----SSEEEEE-CCCCCHHHHHHHHHHHCCS
T ss_pred             EecCCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhC----CCEEEEE-CCCCChHHHHHHHHHHcCC
Confidence            34333 35788999998765433  566654321 11 22344433221    1355554 4568888888888888777


Q ss_pred             CcEEEEcCCcccCC-ChhHHHHHHHhcCceEE
Q 012817          104 KDVLVVSGDLVSDV-PPGAVTAAHRRHDAVVT  134 (456)
Q Consensus       104 ~~~lv~~~D~i~~~-~l~~~l~~~~~~~a~~t  134 (456)
                      +.++++..|.+... -|+.+++.+.+.+.++.
T Consensus        86 ~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v  117 (240)
T 3bcv_A           86 EYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAV  117 (240)
T ss_dssp             SEEEECCTTCCCCTTHHHHHHHHHHHHTCSEE
T ss_pred             CEEEEECCCCcCCHHHHHHHHHHHHhcCCCEE
Confidence            78899999955544 48888888777666654

>3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp}

Probab=83.98  E-value=2.3  Score=38.25  Aligned_cols=87  Identities=13%  Similarity=0.119  Sum_probs=56.7

Q ss_pred             cchHHHHHHHHHHCCCCEEEEEecCchhhHHH--HhhhhhhccCccceEEEEccCCcChHHHHHHHHhcC---CCCcEEE
Q 012817           34 RPVLSYVLEQLELSNIKDLIVVVEGADAALRV--GGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL---TAKDVLV  108 (456)
Q Consensus        34 kpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i--~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l---~~~~~lv  108 (456)
                      ++|+.++++.+...+...++++++.... ...  ..+..      ..+.+.. ....|.+.+|..+...+   ..+.+++
T Consensus        37 ~~ll~~tl~~~~~~~~~~vvvvt~~~~~-~~~~~~~~~~------~~~~~~~-q~~~gLg~rl~~a~~~~~~~~~~~vli  108 (242)
T 3cgx_A           37 RHFVQDMLQGLARLHADLHICYVPGDAD-LPEKFKAWLG------PQHMFAA-QQGLDLGERMKHAMQKAFDDGYDRVVL  108 (242)
T ss_dssp             HHHHHHHHHHHTTSSSEEEEEECCCCTT-HHHHHHHHHC------TTSEEEE-CCSSSHHHHHHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEcCCchh-hhhhhhhhcc------CCcEEec-CCCCCHHHHHHHHHHHHHhCCCCeEEE
Confidence            4899999999998887766666553321 112  33221      1233332 23468888888887654   2356999


Q ss_pred             EcCC--cccCCChhHHHHHHHh
Q 012817          109 VSGD--LVSDVPPGAVTAAHRR  128 (456)
Q Consensus       109 ~~~D--~i~~~~l~~~l~~~~~  128 (456)
                      +.+|  .+...+|..+++.+..
T Consensus       109 igaD~P~L~~~~l~~a~~~l~~  130 (242)
T 3cgx_A          109 MGSDIPDYPCELVQKALNDLQH  130 (242)
T ss_dssp             ECSSCTTCCHHHHHHHHHHTTT
T ss_pred             EcCCCCCCCHHHHHHHHHHhcc
Confidence            9999  6777788888876554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	456
d1mc3a_	291	c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}	3e-15
d1lvwa_	295	c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri	3e-14
d1yp2a2	307	c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltr	4e-13
d1fxoa_	292	c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa	5e-13
d1tzfa_	259	c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransf	1e-11
d1jyka_	229	c.68.1.13 (A:) CTP:phosphocholine cytidylytransfer	2e-09
d2f9ca1	320	b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm	5e-09
d2f9ca1	320	b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm	3e-04
d2dpwa1	231	c.68.1.19 (A:1-231) Uncharacterized protein TTHA01	2e-08
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	3e-08
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	5e-07
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	5e-05
d2oi6a2	248	c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate	1e-07
d1g97a2	250	c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate	2e-07
d1j2za_	259	b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer	5e-07
d1j2za_	259	b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer	1e-05
d1i52a_	225	c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt	2e-06
d2jf2a1	262	b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra	8e-06
d2jf2a1	262	b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra	2e-05
d1vpaa_	221	c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt	9e-06
d1w55a1	205	c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme,	3e-05
d1vgwa_	226	c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt	3e-05
d1mr7a_	203	b.81.1.3 (A:) Xenobiotic acetyltransferase {Entero	5e-05
d1w77a1	226	c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-	7e-05
d2cu2a2	268	c.68.1.20 (A:1-268) Putative mannose-1-phosphate g	2e-04
d1yp2a1	135	b.81.1.4 (A:317-451) Glucose-1-phosphate adenylylt	5e-04
d1xata_	208	b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudo	0.003
d1g97a1	196	b.81.1.4 (A:252-447) N-acetylglucosamine 1-phospha	0.003
d1e5ka_	188	c.68.1.8 (A:) Molybdenum cofactor biosynthesis pro	0.004

>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]

 Score = 74.0 bits (182), Expect = 3e-15
 Identities = 31/143 (21%), Positives = 59/143 (41%), Gaps = 9/143 (6%)

Query: 4   QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL 63
           + ++LAGG+  +L P+ ++ V K LLP+ ++P++ Y L  L L+ I++++++    D   
Sbjct: 3   KGIILAGGSGTRLHPI-TRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGY 61

Query: 64  --RVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVV-SGDLVSDVPPG 120
             R+ G  S      + +E A  P   G A A       L  +   +V   ++       
Sbjct: 62  FQRLLGDGSE---FGIQLEYAEQPSPDGLAQAFIIGETFLNGEPSCLVLGDNIFFGQGFS 118

Query: 121 AVTAAHRRHDAVVTAMICSVPVS 143
                         A +    V 
Sbjct: 119 PKLRHVAARTE--GATVFGYQVM 139

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 71.1 bits (174), Expect = 3e-14
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 10/113 (8%)

Query: 4   QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL 63
           + +VLAGG+  +L P+ ++ V K LLP+ ++P++ Y L  L L+ I+D++++    D  L
Sbjct: 5   KGIVLAGGSGTRLYPI-TRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPL 63

Query: 64  --RVGGWISAAYVDRLHVEVATVPEDV--GTAGALRAIAHHLTAKDVLVVSGD 112
              + G  S     +  V  +   ++   G A A       +    V +V GD
Sbjct: 64  YRDLLGDGS-----QFGVRFSYRVQEEPRGIADAFIVGKDFIGDSKVALVLGD 111

>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 307

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score = 67.7 bits (164), Expect = 4e-13
 Identities = 44/261 (16%), Positives = 94/261 (36%), Gaps = 35/261 (13%)

Query: 6   VVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
           ++L GG   +L PL +K+  K  +P+  N  ++   +     SNI  + V+ +   A+L 
Sbjct: 15  IILGGGAGTRLYPL-TKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 73

Query: 65  VGGWISAA----------YVDRLHVEVATVPEDV--GTAGALRAIAHHLTA---KDVLVV 109
                + A          +V+ L  + +    D   GTA A+R            + L++
Sbjct: 74  RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLIL 133

Query: 110 SGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMD 169
           +GD +  +       AHR  DA +T     +                 K+   + ++ +D
Sbjct: 134 AGDHLYRMDYEKFIQAHRETDADITVAALPMDE---------------KRATAFGLMKID 178

Query: 170 PTKQFLLHI--ATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL-DQ 226
              + +       G +L+        +     +      +    +Y  ++ V+  +L D+
Sbjct: 179 EEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDK 238

Query: 227 KDKFQSLKQDVLPYLVRSQLK 247
                    +V+P      ++
Sbjct: 239 FPGANDFGSEVIPGATSLGMR 259

>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 67.1 bits (164), Expect = 5e-13
 Identities = 31/172 (18%), Positives = 66/172 (38%), Gaps = 28/172 (16%)

Query: 4   QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL 63
           + ++LAGG+  +L P  +  + K LLPV ++P++ Y L  L L+ I++++++    D   
Sbjct: 3   KGIILAGGSGTRLHPA-TLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPR 61

Query: 64  --RVGGWISAAYVDRLHVEVATVPEDV--GTAGALRAIAHHLTAKD-VLVVSGDLVSDVP 118
             ++ G  S        +++    +    G A A       +      LV+  +L     
Sbjct: 62  FQQLLGDGS-----NWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHD 116

Query: 119 PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDP 170
              +  +  +     +  + +  V                 P RY ++  D 
Sbjct: 117 FHELLGSASQRQTGAS--VFAYHV---------------LDPERYGVVEFDQ 151

>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Length = 259

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: Glucose-1-phosphate cytidylyltransferase RfbF
species: Salmonella typhimurium [TaxId: 90371]

 Score = 62.4 bits (150), Expect = 1e-11
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 1  MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKD 51
          M  + V+LAGG   +L    +   PK ++ +  +P+L ++++   +  IKD
Sbjct: 1  MASKAVILAGGLGTRLSEE-TIVKPKPMVEIGGKPILWHIMKMYSVHGIKD 50

>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Length = 229

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CTP:phosphocholine cytidylytransferase LicC
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 55.4 bits (132), Expect = 2e-09
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 1  MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIK 50
          +  + ++LA G   +L PL ++  PKAL+ V  +P++ Y +E L+   I 
Sbjct: 2  IRVKAIILAAGLGTRLRPL-TENTPKALVQVNQKPLIEYQIEFLKEKGIN 50

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

 Score = 55.2 bits (132), Expect = 5e-09
 Identities = 28/129 (21%), Positives = 43/129 (33%), Gaps = 13/129 (10%)

Query: 305 YIASNSKYCVRLNSIQA---FMDINRDVIG-----EANHLS--GYNFSAQNN-IIHPSAE 353
           Y     K  V L  + A   F D+     G     +   LS  G  +    N +     E
Sbjct: 13  YQVDGEKKSVLLRQVIAVTDFNDVKAGTSGGWVDADNV-LSQQGDCWIYDENAMAFAGTE 71

Query: 354 LGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSV-VMNHVTIGDGCSI 412
           +     +   C L    ++GD   + R+ I    RI  NV + +S         GD   +
Sbjct: 72  ITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVL 131

Query: 413 QGSVICSNA 421
             S I +  
Sbjct: 132 NQSEILAIQ 140

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 19/124 (15%), Positives = 35/124 (28%), Gaps = 11/124 (8%)

Query: 292 GSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEAN-HLSGYNFSAQNNIIHP 350
             A V           +N   C     +     +      +A   L   +  A++ +I  
Sbjct: 182 HRAEVFDFALIEGDKDNNVWICDC-AKVYGHARVIAGTEEDAIPTLRYSSQVAEHALIEG 240

Query: 351 SAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGC 410
           +  L     VG H  +  G  +     V    I  H  I   +     ++   V I    
Sbjct: 241 NCVLKHHVLVGGHAEVR-GGPILLDDRVL---IEGHACIQGEI-----LIERQVEISGRA 291

Query: 411 SIQG 414
           ++  
Sbjct: 292 AVIA 295

>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} Length = 231

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: TTHA0179-like
domain: Uncharacterized protein TTHA0179
species: Thermus thermophilus [TaxId: 274]

 Score = 52.6 bits (125), Expect = 2e-08
 Identities = 36/231 (15%), Positives = 67/231 (29%), Gaps = 25/231 (10%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           M    +VLAGG              KAL+P   RP++ +VLE L  + +  + V      
Sbjct: 1   MRPSAIVLAGGKEAWAERF--GVGSKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGL 58

Query: 61  AALRVGGWIS--------AAYVDRLHVEVATVPEDVG--TAGALRAIAHHLTAKD--VLV 108
                                ++ +   V     D+   T  A+R +            +
Sbjct: 59  VPAPALTLPDRGGLLENLEQALEHVEGRVLVATGDIPHLTEEAVRFVLDKAPEAALVYPI 118

Query: 109 VSGDLVSDVPPGAVTAAHRRHDAVVT--AMICSVP--VSGLSEAGSSGAKDKTKKPGRYN 164
           V  + V    P       R  +   T   ++                    + +      
Sbjct: 119 VPKEAVEARFPRTKRTYARLREGTFTGGNLLLLDKSLFRKALPLARRVVALRKRPLALAR 178

Query: 165 IIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAF 215
           ++G D   + LL   + AE+E          + +  ++ RA +        
Sbjct: 179 LVGWDVLLKLLLGRLSLAEVEAR-------AQRILGVEARALVTPYPEVGV 222

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 48.7 bits (116), Expect = 3e-08
 Identities = 11/78 (14%), Positives = 28/78 (35%), Gaps = 6/78 (7%)

Query: 347 IIHPS-AELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVT 405
           +  P+  +L    T G    +     +          +G   +IG+   + NSV+ +   
Sbjct: 3   LRDPARFDLRGTLTHGRDVEIDTNVIIEGNV-----TLGHRVKIGTGCVIKNSVIGDDCE 57

Query: 406 IGDGCSIQGSVICSNAQL 423
           I     ++ + + +   +
Sbjct: 58  ISPYTVVEDANLAAACTI 75

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 45.2 bits (107), Expect = 5e-07
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIG 407
                E+ +   +  +  LG   ++G  C +K SVIG  C I     V ++ +    TIG
Sbjct: 17  HGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIG 76

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 39.4 bits (92), Expect = 5e-05
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 383 IGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSA 442
            GR   I +NV     ++  +VT+G    I    +  N+ + +   +    V +   ++A
Sbjct: 17  HGRDVEIDTNV-----IIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAA 71

Query: 443 GC 444
            C
Sbjct: 72  AC 73

>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 248

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 50.5 bits (119), Expect = 1e-07
 Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 4  QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLI 53
           VV+LA G   ++      ++PK L  +A + ++ +V++         + 
Sbjct: 4  SVVILAAGKGTRMYS----DLPKVLHTLAGKAMVQHVIDAANELGAAHVH 49

>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 49.7 bits (117), Expect = 2e-07
 Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIV 54
          ++LA G   ++      ++PK L  VA   +L +V   +     +  + 
Sbjct: 5  IILAAGKGTRMKS----DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVT 49

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

 Score = 48.5 bits (114), Expect = 5e-07
 Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 343 AQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMN 402
           A+  II P AE+     +G  C++G+G ++ +        +  +  +  +  V  +  + 
Sbjct: 4   AKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGV-----KLHNNVTLQGHTFVGKNTEIF 58

Query: 403 H-VTIGDGCSI 412
               +G     
Sbjct: 59  PFAVLGTQPQD 69

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 17/103 (16%)

Query: 348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIG 407
           I  +A       + P   + +G ++G+ C     VIG   ++   V      + N+VT+ 
Sbjct: 3   IAKTA------IISPKAEINKGVEIGEFC-----VIGDGVKLDEGV-----KLHNNVTLQ 46

Query: 408 DGCSIQ-GSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGE 449
               +   + I   A L  +      +     ++        E
Sbjct: 47  GHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIRE 89

>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Escherichia coli [TaxId: 562]

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 1  MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          +D   VV A G  +++      E PK  L + N+ +L + +  L        +V+ 
Sbjct: 2  LDVCAVVPAAGFGRRM----QTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIA 53

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

 Score = 44.9 bits (105), Expect = 8e-06
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 10/101 (9%)

Query: 344 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNH 403
           ++  +HP+A +    ++G +  +G    +G         IG    + S+V     VV  H
Sbjct: 4   KSAFVHPTAIVEEGASIGANAHIGPFCIVGPHV-----EIGEGTVLKSHV-----VVNGH 53

Query: 404 VTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGC 444
             IG    I             + A +  +V  G       
Sbjct: 54  TKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRE 94

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 14/91 (15%)

Query: 345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVVNSVVM-- 401
             I+   A +G+   +GP C++G   ++G+   +K   V+  H +IG + ++     +  
Sbjct: 11  TAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGE 70

Query: 402 -----------NHVTIGDGCSIQGSVICSNA 421
                        V IGD   I+ SV     
Sbjct: 71  VNQDLKYAGEPTRVEIGDRNRIRESVTIHRG 101

>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thermotoga maritima [TaxId: 2336]

 Score = 44.3 bits (103), Expect = 9e-06
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          ++LA G  +++    S+ VPK  L +  R +  Y L     S   D +V+V
Sbjct: 7  ILLAAGKGERM----SENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIV 53

>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} Length = 205

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain
species: Campylobacter jejuni [TaxId: 197]

 Score = 43.0 bits (100), Expect = 3e-05
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 2  DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLE 45
          +  +++LA G S +     + +V K  L + N P+  Y  + L 
Sbjct: 1  EMSLIMLAAGNSTRF----NTKVKKQFLRLGNDPLWLYATKNLS 40

>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} Length = 226

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Neisseria gonorrhoeae [TaxId: 485]

 Score = 42.7 bits (99), Expect = 3e-05
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          ++ A G   +       + PK  + + ++ VL +VL   E     DL VVV
Sbjct: 7  LIPAAGIGVRF----GADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVV 53

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} Length = 203

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

 Score = 41.7 bits (97), Expect = 5e-05
 Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 7/69 (10%)

Query: 346 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV--NSVVMNH 403
             ++P     S   + P     E  ++G+      S          + +++    ++ + 
Sbjct: 6   MKMYPIEGNKSVQFIKPILEKLENVEVGE-----YSYYDSKNGETFDKQILYHYPILNDK 60

Query: 404 VTIGDGCSI 412
           + IG  CSI
Sbjct: 61  LKIGKFCSI 69

>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 226

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

 Score = 41.6 bits (96), Expect = 7e-05
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 5  VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIV 54
          V++LAGG  K++       +PK  +P+  +P+  Y             IV
Sbjct: 7  VILLAGGQGKRM----KMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIV 52

>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: mannose-1-phosphate guanylyl transferase
domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
species: Thermus thermophilus [TaxId: 274]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 1  MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQL 44
          M    +V+AGG  ++L PL  ++ PK  LP+   + +L   LE+L
Sbjct: 1  MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERL 45

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 135

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score = 37.8 bits (87), Expect = 5e-04
 Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 374 DKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQ 433
               V  SVIG  C I +   + +SVV     I +G  I+ S++      +     K   
Sbjct: 8   LDADVTDSVIGEGCVIKNCK-IHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLA 66

Query: 434 VGQGYVVSAGC 444
                 +  G 
Sbjct: 67  AKGSVPIGIGK 77

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} Length = 208

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 17/113 (15%), Positives = 34/113 (30%), Gaps = 10/113 (8%)

Query: 345 NNIIHPSAELGSKTTVGPHCMLGEGSQ-----MGDKCSVKRSVIGRHCRIGSNVKVVNSV 399
             + +P+  +G  +    +             M D+  V + VIG  C IGS    + + 
Sbjct: 14  EQVSNPNIRVGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAFIMAG 73

Query: 400 VMNH----VTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKG 448
              H     +      +      + A    + A  D  +G    +     +  
Sbjct: 74  NQGHRAEWASTFPFHFMHEEPAFAGAVNGYQPA-GDTLIGHEVWIGTEAMFMP 125

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 196

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 9/57 (15%), Positives = 22/57 (38%)

Query: 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNH 403
            I    E+ S+  +  +  L   +++G +  +          IG+   + NS++   
Sbjct: 10  YIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEES 66

>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Molybdenum cofactor biosynthesis protein MobA
domain: Molybdenum cofactor biosynthesis protein MobA
species: Escherichia coli [TaxId: 562]

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 5/38 (13%)

Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQ 43
          VVLAGG ++++       V K LL +  +P+  +V + 
Sbjct: 7  VVLAGGKARRM-----GGVDKGLLELNGKPLWQHVADA 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	456
d1fxoa_	292	RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}	100.0
d1mc3a_	291	RffH {Escherichia coli [TaxId: 562]}	100.0
d1yp2a2	307	Glucose-1-phosphate adenylyltransferase small subu	99.97
d1lvwa_	295	RmlA (RfbA) {Archaeon Methanobacterium thermoautot	99.96
d2cu2a2	268	Putative mannose-1-phosphate guanylyl transferase	99.93
d1tzfa_	259	Glucose-1-phosphate cytidylyltransferase RfbF {Sal	99.93
d1jyka_	229	CTP:phosphocholine cytidylytransferase LicC {Strep	99.89
d1g97a2	250	N-acetylglucosamine 1-phosphate uridyltransferase	99.85
d2oi6a2	248	N-acetylglucosamine 1-phosphate uridyltransferase	99.8
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.57
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.55
d2dpwa1	231	Uncharacterized protein TTHA0179 {Thermus thermoph	99.51
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.51
d1i52a_	225	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.49
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	99.47
d1w77a1	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.45
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.45
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	99.43
d1vpaa_	221	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.43
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	99.43
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.42
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.41
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	99.39
d1w55a1	205	IspD/IspF bifunctional enzyme, CDP-me synthase dom	99.37
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.36
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	99.36
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.36
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.3
d1vgwa_	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.3
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.28
d1e5ka_	188	Molybdenum cofactor biosynthesis protein MobA {Esc	99.27
d1vh1a_	246	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	99.25
d1h7ea_	245	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	99.25
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.2
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	99.17
d1vica_	255	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	99.16
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.14
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.12
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	99.12
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	99.12
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	99.06
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	99.05
d1eyra_	225	CMP acylneuraminate synthetase {Neisseria meningit	99.02
d1qwja_	228	CMP acylneuraminate synthetase {Mouse (Mus musculu	98.95
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	98.93
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	98.89
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	98.88
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	98.88
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	98.82
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	98.67
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	98.66
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	98.59
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	98.57
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	98.51
d2icya2	378	UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c	98.37
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	98.35
d1jv1a_	501	UDP-N-acetylglucosamine pyrophosphorylase {Human (	97.16
d2i5ea1	208	Hypothetical protein MM2497 {Methanosarcina mazei	88.92
d1xhba2	328	Polypeptide N-acetylgalactosaminyltransferase 1, N	81.49
d1omza_	265	Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga	80.25

>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=3.7e-34  Score=268.84  Aligned_cols=206  Identities=20%  Similarity=0.307  Sum_probs=165.1

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~   81 (456)
                      +++|||||||.|+||+|+ |...||||+||+|||||+|+|++|..+|+++++|++.+.. .+.+++++.+.......+.+
T Consensus         1 k~KavILAgG~GtRl~pl-T~~~pKpllpi~gkPiI~~~l~~l~~~Gi~ei~ii~~~~~-~~~i~~~~~~~~~~g~~I~y   78 (292)
T d1fxoa_           1 KRKGIILAGGSGTRLHPA-TLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQD-TPRFQQLLGDGSNWGLDLQY   78 (292)
T ss_dssp             CEEEEEECCCCCTTTTTH-HHHSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTT-HHHHHHHHTTSGGGTCEEEE
T ss_pred             CcEEEEECCCCCCcCChh-hcCCCcccCEECCEehHHHHHHHHHHCCCCEEEEEeCcCC-HHHHHHHhccccccCeEEEE
Confidence            579999999999999999 9999999999999999999999999999999998887443 34677766654333456777


Q ss_pred             EEccCCcChHHHHHHHHhcCCCCc-EEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCC
Q 012817           82 ATVPEDVGTAGALRAIAHHLTAKD-VLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKP  160 (456)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~l~~~~-~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (456)
                      +.++.+.||++|+..|.+.+.+++ ++++++|++++.++.+++++|.++++.+++++.+++                 +|
T Consensus        79 ~~q~~~~Gta~ai~~a~~~i~~~~~~lil~dD~~~~~dl~~ll~~h~~~~~~~~i~~~~V~-----------------~p  141 (292)
T d1fxoa_          79 AVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVL-----------------DP  141 (292)
T ss_dssp             EECSSCCCGGGHHHHTHHHHTTSEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEECS-----------------CG
T ss_pred             ccCCCCCcHHHHHHhhhhhcCCCceEEEEccccccCcCHHHHHHHHHhCCCCcEEEEEECC-----------------CH
Confidence            888888999999999999887665 577777899999999999999999999999888764                 26


Q ss_pred             CcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcC--ccccccccchh
Q 012817          161 GRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK--DKFQSLKQDVL  238 (456)
Q Consensus       161 ~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~--~~~~s~~~d~l  238 (456)
                      ++||++.+|++++++ .+.     ||+.             ++.|+++.+|+|+|+++++..+-.-.  ...+...+|++
T Consensus       142 ~~yGV~~~d~~~ki~-~~~-----EKP~-------------~p~Snla~~G~Y~f~~~~~~~~~~l~~s~rgE~eitD~~  202 (292)
T d1fxoa_         142 ERYGVVEFDQGGKAI-SLE-----EKPL-------------EPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVN  202 (292)
T ss_dssp             GGSEEEEECTTSCEE-EEE-----ESCS-------------SCSSSEEEEEEEEECTTHHHHHHHCCCCTTSSCCHHHHH
T ss_pred             HHCeEEEEcCCCCEe-EEE-----ECCC-------------CCCCCcEEEEEEEEChHHHHHHHhCCCCCCCchhhHHHH
Confidence            789999999988754 443     3431             33589999999999999986442211  22344456888


Q ss_pred             HHHhHhc
Q 012817          239 PYLVRSQ  245 (456)
Q Consensus       239 ~~l~~~~  245 (456)
                      +.+++++
T Consensus       203 ~~~l~~~  209 (292)
T d1fxoa_         203 RAYLERG  209 (292)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHcC
Confidence            8887653

>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.3e-33  Score=258.57  Aligned_cols=204  Identities=18%  Similarity=0.286  Sum_probs=160.5

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~   82 (456)
                      |+|||||||.|+||+|+ |...||||+|++|||||+|+|+.|.++|+++++|++++.. ...++.++.+.......+.++
T Consensus         2 MkaiIlagG~GtRl~p~-t~~~pK~llpi~~kp~i~~~l~~l~~~gi~~i~iv~~~~~-~~~~~~~~~~g~~~gi~I~y~   79 (291)
T d1mc3a_           2 MKGIILAGGSGTRLHPI-TRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPED-KGYFQRLLGDGSEFGIQLEYA   79 (291)
T ss_dssp             CEEEEECCCCCGGGHHH-HTTSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTT-HHHHHHHHTTSGGGTCEEEEE
T ss_pred             ccEEEECCcCccccchh-hcCCCccccEECCEehHHHHHHHHHHcCCCEEEEEeCccc-HHHHHHHhCchHhhCcEEEEE
Confidence            88999999999999999 9999999999999999999999999999999999998653 235666665433334567788


Q ss_pred             EccCCcChHHHHHHHHhcCCCCcE-EEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCC
Q 012817           83 TVPEDVGTAGALRAIAHHLTAKDV-LVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPG  161 (456)
Q Consensus        83 ~~~~~~gt~~al~~~~~~l~~~~~-lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (456)
                      .++.+.||++|+..+.+++.++++ +++++|+++..++..+++.|.+.++.+|+++.+++                 +|+
T Consensus        80 ~Q~~plGta~Ai~~a~~fi~~~~~~lvlgddi~~~~~~~~~l~~~~~~~~~atI~~~~V~-----------------dP~  142 (291)
T d1mc3a_          80 EQPSPDGLAQAFIIGETFLNGEPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVM-----------------DPE  142 (291)
T ss_dssp             ECSSCCCSTHHHHHTHHHHTTSCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECS-----------------CCS
T ss_pred             ECCCCCchHHHHHHHHHHhCCCCeEEEECCCcccCcCHHHHHHHHHhCcCCcEEEEEECC-----------------Ccc
Confidence            888899999999999999876664 55566688999999999999999889999988764                 277


Q ss_pred             cccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCc--cccccccchhH
Q 012817          162 RYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD--KFQSLKQDVLP  239 (456)
Q Consensus       162 ~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~--~~~s~~~d~l~  239 (456)
                      +||++.+|+++++ ..+.|     |+.             .+.|+++++|+|+|+++++..+-.-..  ..+...+|+++
T Consensus       143 ~yGVve~d~~g~i-~~i~E-----KP~-------------~p~Sn~a~~GiY~f~~~v~~~~~~lk~s~rgE~EItdl~~  203 (291)
T d1mc3a_         143 RFGVVEFDDNFRA-ISLEE-----KPK-------------QPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQ  203 (291)
T ss_dssp             SSBBCEEETTEEE-EECCB-----SCS-------------SCSCSEEEEEEEECCTHHHHHHHSCCCCSSSSCCHHHHHH
T ss_pred             cCCCceeccCcce-eEEEE-----CCC-------------CCCCCeEEEEEEEeChHHHHHHhcCCCCCCCceeehHHHH
Confidence            8999999988764 44543     321             235889999999999999975432111  11212357777


Q ss_pred             HHhHh
Q 012817          240 YLVRS  244 (456)
Q Consensus       240 ~l~~~  244 (456)
                      .+.++
T Consensus       204 ~~l~~  208 (291)
T d1mc3a_         204 MYLEA  208 (291)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            77654

>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.97  E-value=9.8e-30  Score=243.13  Aligned_cols=257  Identities=18%  Similarity=0.283  Sum_probs=177.4

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCc-chHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCc----
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDR----   76 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gk-pli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~----   76 (456)
                      ++.|||||||.|+||+|+ |..+||||+|++|+ |||+|+|++|.++|+++|+|++++..  +.+.+++.+.+...    
T Consensus        11 ~~~AIILAaG~GtRL~pl-T~~~PK~llpv~g~~plI~~~l~~l~~~gi~~I~Iv~~~~~--~~i~~~l~~~~~~~l~~~   87 (307)
T d1yp2a2          11 SVLGIILGGGAGTRLYPL-TKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS--ASLNRHLSRAYASNMGGY   87 (307)
T ss_dssp             HEEEEEC------CCTTT-TTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCC--HHHHHHHHHHCC------
T ss_pred             ceEEEEECCCCcccCChh-hcCCCcceEEECCCCCHHHHHHHHHHHcCCCEEEEEecccc--ccchhhhhcccccccccc
Confidence            368999999999999999 88999999999885 99999999999999999999998764  24444444332211    


Q ss_pred             --cceEEEEccC--------CcChHHHHHHHHhcCC---CCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccC
Q 012817           77 --LHVEVATVPE--------DVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVS  143 (456)
Q Consensus        77 --~~i~~~~~~~--------~~gt~~al~~~~~~l~---~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~  143 (456)
                        ..........        ..|++++++.+...+.   .++|++++||++++.++..+++.|+..++.+++++...+.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~g~~~ai~~~~~~i~~~~~~~~iv~~~D~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  167 (307)
T d1yp2a2          88 KNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEK  167 (307)
T ss_dssp             --CCEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEECHH
T ss_pred             cccccceeeceeeeccccccccchhHHHHHhHHhhhccccceEEEecCcceeccchhhhhhhhhhccccceEEEEecccc
Confidence              1122222111        2589999998877654   35799999999999999999999999999988887766532


Q ss_pred             CCccCCCCCCcccCCCCCcccEEEecCCCcEEEEeecccccccc--cccchHHHh-hcceeEEecCCccceEEeechHHH
Q 012817          144 GLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKD--TRIRKSILR-AVGQMDIRADLMDAHMYAFNRSVL  220 (456)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~--~~~~~~~~~-~~~~~~~~~~~~~~giYi~~~~vl  220 (456)
                      +               +..||++.+|+++++ ..+.|+++.+..  .......+. ..........++++|+|+|++++|
T Consensus       168 ~---------------~~~~gvv~~d~~~~v-~~~~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giyi~~~~~l  231 (307)
T d1yp2a2         168 R---------------ATAFGLMKIDEEGRI-IEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVM  231 (307)
T ss_dssp             H---------------HTTSEEEEECTTSBE-EEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHH
T ss_pred             c---------------ccccceEEECCCCcE-EEEEECCCCcccccccccccccccccchhhcccchhhCceEEECHHHH
Confidence            2               446899999988764 455443321110  000000000 000011234578899999999999


Q ss_pred             HHHHhcC-ccccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCcc
Q 012817          221 QEVLDQK-DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRT  299 (456)
Q Consensus       221 ~~~~~~~-~~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (456)
                      ..++.+. ....++..|+++.+++.+.                                                     
T Consensus       232 ~~~~~~~~~~~~~~~~d~i~~li~~g~-----------------------------------------------------  258 (307)
T d1yp2a2         232 LNLLRDKFPGANDFGSEVIPGATSLGM-----------------------------------------------------  258 (307)
T ss_dssp             HHHHHTTCTTCCCTTTTHHHHHHHTTC-----------------------------------------------------
T ss_pred             HHHhhhccccccchHHHHHHHHHHCCC-----------------------------------------------------
Confidence            8776543 3456678899999887542                                                     


Q ss_pred             eeeEEEEecCcchhhcccCHHHHHHHhHhhhccc
Q 012817          300 HKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEA  333 (456)
Q Consensus       300 ~~~~~yi~~~~~~~~~i~~~~~y~~~~~~~l~~~  333 (456)
                       ++.+|  +..+||.+++|+++|++++++++.+.
T Consensus       259 -~v~~~--~~~g~W~Digt~~~~~~a~~~ll~~~  289 (307)
T d1yp2a2         259 -RVQAY--LYDGYWEDIGTIEAFYNANLGITKKP  289 (307)
T ss_dssp             -CEEEE--ECCSCCEECSSHHHHHHHHHGGGCSS
T ss_pred             -cEEEE--EeCCeEEECcCHHHHHHHHHHHhcCC
Confidence             33444  56789999999999999999998765

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.96  E-value=7e-29  Score=235.43  Aligned_cols=184  Identities=17%  Similarity=0.312  Sum_probs=148.1

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~   81 (456)
                      .|+|||||||.|+||+|+ |...||||+|++|+|||+|+|+++..+|+++++|++++.. .+.++.++.+.......+.+
T Consensus         3 ~MkavIlagG~GtRl~p~-t~~~PK~ll~i~~kpii~~~l~~l~~~g~~~i~Iv~~~~~-~~~~~~~~~~~~~~~~~i~~   80 (295)
T d1lvwa_           3 HMKGIVLAGGSGTRLYPI-TRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRD-LPLYRDLLGDGSQFGVRFSY   80 (295)
T ss_dssp             SCEEEEECCCCCSTTTTT-TTSSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTT-HHHHHHHHTTSGGGTSEEEE
T ss_pred             CcEEEEECCCCcccCCcc-cCCCCcccCeECCEEHHHHHHHHHHHCCCCeEEEEeCccc-HHHHHHHhccchhcCCEEEE
Confidence            589999999999999999 7889999999999999999999999999999999998653 24566666543322345677


Q ss_pred             EEccCCcChHHHHHHHHhcCCCCc-EEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCC
Q 012817           82 ATVPEDVGTAGALRAIAHHLTAKD-VLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKP  160 (456)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~l~~~~-~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (456)
                      +.+++++||++|+..|.+.+.+++ ++++++|++...++..++..|.+.+..+++++.+..                 +|
T Consensus        81 v~e~~~~gta~Al~~a~~~l~~~~~~li~~~d~~~~~~~~~~~~~~~~~~~~~ti~~~~~~-----------------~~  143 (295)
T d1lvwa_          81 RVQEEPRGIADAFIVGKDFIGDSKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVR-----------------DP  143 (295)
T ss_dssp             EECSSCCCGGGHHHHTHHHHTTSCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEECS-----------------CC
T ss_pred             EECCCCCCHHHHHHHHHHHcCCCCEEEEeCCcceechhHHHHHHHHHhCCCCeEEEEEEcC-----------------CC
Confidence            888888999999999999887654 667777788899999999999999999988877653                 26


Q ss_pred             CcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHH
Q 012817          161 GRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV  223 (456)
Q Consensus       161 ~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~  223 (456)
                      ..||++.++.++++ ..+.|+++                  ...+.++++|+|+|++.+|..+
T Consensus       144 ~~yG~i~~~~~~~v-~~~~EKp~------------------~~~s~~~~~Giy~~n~~if~~~  187 (295)
T d1lvwa_         144 RPFGVVEFDSEGRV-ISIEEKPS------------------RPKSNYVVPGLYFYDNQVVEIA  187 (295)
T ss_dssp             TTSEEEEECTTSBE-EEEEESCS------------------SCSCSEECCSEEEECTTHHHHH
T ss_pred             ccccEEEECCCCcE-EEEeeccc------------------CcccceeecceEEECHHHHHHH
Confidence            67999999887764 45543221                  1135788999999999998644

>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: mannose-1-phosphate guanylyl transferase
domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=2.8e-26  Score=213.88  Aligned_cols=189  Identities=20%  Similarity=0.268  Sum_probs=129.8

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCccccccc-CCcchHHHHHHHHHHC-CCCEEEEEecCchhhHHHHhhhhhhccCccc
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPV-ANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLH   78 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi-~gkpli~~~l~~l~~~-gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~   78 (456)
                      |++.|||||||.|+||||||+..+||||+|+ +++|||+|+++++... +.++++++++...  +.+.++.    ..  .
T Consensus         1 MKi~aVILAGG~GtRL~PlS~~~~PK~ll~i~g~k~ll~~~i~rl~~~~~~~~i~i~~~~~~--~~~~~~~----~~--~   72 (268)
T d2cu2a2           1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQ--EAVARPY----AD--G   72 (268)
T ss_dssp             CCEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGG--HHHHGGG----CS--S
T ss_pred             CCceEEEecCCCcccCCCcccCCCCceeeecCCCCCHHHHHHHHhhCcCCccchhhhhhHHH--HHHhhhh----cc--c
Confidence            8889999999999999999878899999997 5699999999999874 5678888876442  3443322    11  2


Q ss_pred             eEEEEccCCcChHHHHHHHHhcC---CCCcEEEEcCCcccCCChh--HHHHH---HHhcCceEEEEEeecccCCCccCCC
Q 012817           79 VEVATVPEDVGTAGALRAIAHHL---TAKDVLVVSGDLVSDVPPG--AVTAA---HRRHDAVVTAMICSVPVSGLSEAGS  150 (456)
Q Consensus        79 i~~~~~~~~~gt~~al~~~~~~l---~~~~~lv~~~D~i~~~~l~--~~l~~---~~~~~a~~t~~~~~~~~~~~~~~~~  150 (456)
                      ..++.++.+.||++++..+...+   .++.++|++||+++..++.  ..+..   +.+.+..+++...+..         
T Consensus        73 ~~ii~E~~~~~t~~a~~~~~~~~~~~~~~~vlvl~~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---------  143 (268)
T d2cu2a2          73 IRLLLEPLGRDTAGAVLLGVAEALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTR---------  143 (268)
T ss_dssp             SEEEEESSCCHHHHHHHHHHHHHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECCSS---------
T ss_pred             cceeeeeecCCcccchhhHHHHHhccCCceeEEEecchhhcccHHHHHHHHHHHHHHhcCCeEeeeccccc---------
Confidence            56676788899998887664332   3567999999988877643  33333   2234555555544322         


Q ss_pred             CCCcccCCCCCcccEEEecCCCc---EEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHh
Q 012817          151 SGAKDKTKKPGRYNIIGMDPTKQ---FLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (456)
Q Consensus       151 ~~~~~~~~~~~~~~iv~~d~~~~---~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~  225 (456)
                              .+..||++.+++++.   .+..+.|+++.+.    ......       ...++|+|+|+|++++|.+.+.
T Consensus       144 --------~~~~yG~i~~~~~~~~~~~v~~f~EKp~~~~----~~~~~~-------~~~~~N~Giy~f~~~~l~~~~~  202 (268)
T d2cu2a2         144 --------PETEYGYIRLGPREGAWYRGEGFVEKPSYAE----ALEYIR-------KGYVWNGGVFAFAPATMAELFR  202 (268)
T ss_dssp             --------CCSSSCEEEEEEEETTEEEEEEEECCCCHHH----HHHHHH-------TTCEEEEEEEEECHHHHHHHHH
T ss_pred             --------cccccceEEeccccccchhhheeecccchhh----hhhhhc-------cCcccchhhhhcchHHHHHHHH
Confidence                    256899998876432   4556654332211    111111       2467999999999999876643

>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: Glucose-1-phosphate cytidylyltransferase RfbF
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.93  E-value=9.2e-25  Score=202.50  Aligned_cols=229  Identities=17%  Similarity=0.312  Sum_probs=159.3

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhcc------
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV------   74 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~------   74 (456)
                      |..+|||||||.|+||+|+ |...||||+|++|+|||+|+|+.|.++|+++++|++++..  +++++++.+.+.      
T Consensus         1 ~~~kAiILAAG~GtRl~~l-T~~~PK~Ll~i~gkplI~~~i~~l~~~gi~~i~iv~gy~~--~~i~~~~~~~~~~~~~i~   77 (259)
T d1tzfa_           1 MASKAVILAGGLGTRLSEE-TIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKG--YVIKEYFANYFLHMSDVT   77 (259)
T ss_dssp             CCCEEEEEECSCC---------CCCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTH--HHHHHHHHTHHHHHSCEE
T ss_pred             CCceEEEECCCccccCChh-hCCCCccceEECCEEHHHHHHHHHHHcCCCeeeeccchhH--HHHHHHHhcchhcccccc
Confidence            8899999999999999999 9999999999999999999999999999999999999763  456555532210      


Q ss_pred             ---------------CccceEEEEccCCcChHHHHHHHHhcCCC-CcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEe
Q 012817           75 ---------------DRLHVEVATVPEDVGTAGALRAIAHHLTA-KDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMIC  138 (456)
Q Consensus        75 ---------------~~~~i~~~~~~~~~gt~~al~~~~~~l~~-~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~  138 (456)
                                     ....+.+.......++.+++..+.+.... +.++++.+|.+++.++..+++.|...+...+....
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (259)
T d1tzfa_          78 FHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTAT  157 (259)
T ss_dssp             EEGGGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTTTSSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEEEE
T ss_pred             chhccccchhhhccccccceeEEeccccccccchhhhhhhhccCCCceEEeccccccccchhhhhhhhcccccceeeccc
Confidence                           11224455555668899999888777653 56999999999999999999999988887766554


Q ss_pred             ecccCCCccCCCCCCcccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechH
Q 012817          139 SVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRS  218 (456)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~  218 (456)
                      ..                   +..++.+..... . +.....    ++               ...+.+.++|+|+++++
T Consensus       158 ~~-------------------~~~~~~~~~~~~-~-i~~~~~----~~---------------~~~~~~~~~G~y~~~~~  197 (259)
T d1tzfa_         158 FP-------------------PGRFGALDIQAG-Q-VRSFQE----KP---------------KGDGAMINGGFFVLNPS  197 (259)
T ss_dssp             CC-------------------CCCSEEEEEETT-E-EEEEEE----SC---------------SCCSCCEECCCEEECGG
T ss_pred             cc-------------------cccCCceecccc-e-EEeeee----cc---------------ccceeeecceeccccch
Confidence            32                   223444433322 2 221111    11               12456788999999999


Q ss_pred             HHHHHHhcCccccccccchhHHHhHhccccccccCCCCCCccccccCCCcchhhhhccCCCCcccccccCCCCCCCCCCc
Q 012817          219 VLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRR  298 (456)
Q Consensus       219 vl~~~~~~~~~~~s~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (456)
                      ++..+ ..  ...++.+++++.|++++                                                     
T Consensus       198 ~~~~i-~~--~~~~~~~~~l~~l~~~~-----------------------------------------------------  221 (259)
T d1tzfa_         198 VIDLI-DN--DATTWEQEPLMTLAQQG-----------------------------------------------------  221 (259)
T ss_dssp             GGGGC-CS--TTCCTTTHHHHHHHHTT-----------------------------------------------------
T ss_pred             hhhhc-cc--CcCccHHHHHHHHHhcC-----------------------------------------------------
Confidence            88643 32  23556689999988743                                                     


Q ss_pred             ceeeEEEEecCcchhhcccCHHHHHHHhHhhhcc
Q 012817          299 THKCCVYIASNSKYCVRLNSIQAFMDINRDVIGE  332 (456)
Q Consensus       299 ~~~~~~yi~~~~~~~~~i~~~~~y~~~~~~~l~~  332 (456)
                        ++.+|  ...+||.+++|+++|..++..+...
T Consensus       222 --~v~~~--~~~g~W~didt~~d~~~~~~~~~~~  251 (259)
T d1tzfa_         222 --ELMAF--EHPGFWQPMDTLRDKVYLEGLWEKG  251 (259)
T ss_dssp             --CEEEE--EECSCEEECCSHHHHHHHHHHHHTT
T ss_pred             --CeEEE--EeCCEEEECCCHHHHHHHHHHHHcC
Confidence              12334  4477999999999998888766553

>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CTP:phosphocholine cytidylytransferase LicC
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.89  E-value=5.5e-23  Score=187.05  Aligned_cols=168  Identities=15%  Similarity=0.202  Sum_probs=119.2

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |+|+|||||||.|+||+|+ |...||||+|++|+|||+|+++.|.++|+++++|++++.  .++++.+. +.    ++++
T Consensus         2 m~mkaiIlaaG~GtRl~p~-t~~~pK~ll~i~gkpli~~~i~~l~~~g~~~i~iv~g~~--~e~i~~~~-~~----~~i~   73 (229)
T d1jyka_           2 IRVKAIILAAGLGTRLRPL-TENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYL--KEQFDYLK-EK----YGVR   73 (229)
T ss_dssp             CCCEEEEEECSCCGGGTTT-TSSSCGGGCEETTEEHHHHHHHHHHHTTCCCEEEEECTT--GGGGTHHH-HH----HCCE
T ss_pred             CceeEEEECCCCcccCCcc-ccCCCcceeEECCEEHHHHHHHHHHHhCCcccccccccc--hhhhhhhh-hh----cccc
Confidence            8999999999999999999 899999999999999999999999999999999999864  23454332 22    2355


Q ss_pred             EEEccC--CcChHHHHHHHHhcCCCCcEEEEcCCcccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCC
Q 012817           81 VATVPE--DVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK  158 (456)
Q Consensus        81 ~~~~~~--~~gt~~al~~~~~~l~~~~~lv~~~D~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~  158 (456)
                      ++..++  ..|++++++.+.+.+. +++++.++|++++..+.+.+    .. +  ..+.....  +              
T Consensus        74 i~~~~~~~~~Gt~~sl~~a~~~l~-~~~ii~~dd~~~~~~~~~~~----~~-~--~~~~~~~~--~--------------  129 (229)
T d1jyka_          74 LVFNDKYADYNNFYSLYLVKEELA-NSYVIDADNYLFKNMFRNDL----TR-S--TYFSVYRE--D--------------  129 (229)
T ss_dssp             EEECTTTTTSCTHHHHHTTGGGCT-TEEEEETTEEESSCCCCSCC----CS-E--EEEECEES--S--------------
T ss_pred             ccccccccccccccccccchhhhc-ccccccccccccccchhhhh----hc-c--ccceeeee--e--------------
Confidence            665443  4799999999988885 56777777777665554322    11 2  12222221  1              


Q ss_pred             CCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHH
Q 012817          159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV  223 (456)
Q Consensus       159 ~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~  223 (456)
                       +..++++..++++++ ..+.     +++                .+....+|+|+|++.....+
T Consensus       130 -~~~~~~~~~~~~~~i-~~~~-----~~~----------------~~~~~~~gi~~~~~~~~~~~  171 (229)
T d1jyka_         130 -CTNEWFLVYGDDYKV-QDII-----VDS----------------KAGRILSGVSFWDAPTAEKI  171 (229)
T ss_dssp             -CSSCCEEEECTTCBE-EEEE-----CCC----------------SSEEBCCSEEEECHHHHHHH
T ss_pred             -ccccceeEEccCCce-eeEE-----Eec----------------ccceEEEEEEEEcHHHHHHH
Confidence             345677888877764 3332     111                23456789999998876544

>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.85  E-value=3.7e-20  Score=170.00  Aligned_cols=198  Identities=20%  Similarity=0.264  Sum_probs=137.0

Q ss_pred             eEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEEE
Q 012817            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT   83 (456)
Q Consensus         4 ~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~~   83 (456)
                      .|||||||.|+||+|    ..||||+|++|||||+|+++.|.++|+++++|++++..  +.+..+...      ...+..
T Consensus         3 ~AIIlAaG~GtRl~~----~~PK~L~~i~Gkpli~~~l~~l~~~~~~~iivv~~~~~--~~~~~~~~~------~~~~~~   70 (250)
T d1g97a2           3 FAIILAAGKGTRMKS----DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKA--ELVEEVLAG------QTEFVT   70 (250)
T ss_dssp             EEEEECCCCCGGGCC----SSCGGGSEETTEEHHHHHHHHHGGGCCSEEEEEECTTH--HHHHHHTTT------TSEEEE
T ss_pred             EEEEECCCCCCCCCC----CCCceeeEECCeeHHHHHHHHHHHcCCCeEEEeccccc--chhhhhccc------cccccc
Confidence            599999999999976    47999999999999999999999999999999998663  233333221      244555


Q ss_pred             ccCCcChHHHHHHHHhcCC--CCc-EEEEcCC-cccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCCC
Q 012817           84 VPEDVGTAGALRAIAHHLT--AKD-VLVVSGD-LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK  159 (456)
Q Consensus        84 ~~~~~gt~~al~~~~~~l~--~~~-~lv~~~D-~i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~  159 (456)
                      .....|+.+++..+...+.  .++ +++..+| ++...+++++++.|...++.+++...+...                 
T Consensus        71 ~~~~~g~~~~~~~a~~~l~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-----------------  133 (250)
T d1g97a2          71 QSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDN-----------------  133 (250)
T ss_dssp             CSSCCCHHHHHHTTHHHHTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSC-----------------
T ss_pred             cccccccchHHHHHHHhhhcccCcceEEecCCCccCHHHHHHHHHHHhhhccccccccceecc-----------------
Confidence            6677899999888766554  233 4544545 556678999999999999988887766542                 


Q ss_pred             CCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcC----cccccccc
Q 012817          160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK----DKFQSLKQ  235 (456)
Q Consensus       160 ~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~----~~~~s~~~  235 (456)
                      +..++.+..+.+..+.. +.+.    ++.. .         ....++++.+|+|+|+...|.+++...    .....+..
T Consensus       134 ~~~~~~~~~~~~~~v~~-~~~~----~~~~-~---------~~~~~~~~~~g~y~f~~~~l~~~l~~~~~~~~~~~~~~~  198 (250)
T d1g97a2         134 PFGYGRIVRNDNAEVLR-IVEQ----KDAT-D---------FEKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYIT  198 (250)
T ss_dssp             CTTSCEEEECTTCCEEE-EECG----GGCC-H---------HHHTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCGG
T ss_pred             cCCCceEEEeeceEEEE-eecc----cccc-c---------cccccceeeeeeeecchHHHHHHHHHhccCcchhhHHHh
Confidence            44577777776665433 3221    1110 0         011345679999999999888776532    12233456


Q ss_pred             chhHHHhHhc
Q 012817          236 DVLPYLVRSQ  245 (456)
Q Consensus       236 d~l~~l~~~~  245 (456)
                      ++++.+.+++
T Consensus       199 ~~~~~~~~~g  208 (250)
T d1g97a2         199 DVIGIFRETG  208 (250)
T ss_dssp             GHHHHHHHTT
T ss_pred             HHHHHHHHCC
Confidence            7777766543

>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=5.8e-18  Score=155.09  Aligned_cols=199  Identities=13%  Similarity=0.201  Sum_probs=125.8

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~   81 (456)
                      .|++||||||.|+||.|    ..||||+|++|||||+|+|+.|...|+++++|++++...  .+..+..     .....+
T Consensus         2 ~MkvIILAAG~GtRm~~----~~PKpli~i~gkpiie~~i~~l~~~~~~~iiiv~~~~~~--~~~~~~~-----~~~~~~   70 (248)
T d2oi6a2           2 AMSVVILAAGKGTRMYS----DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGD--LLKQALK-----DDNLNW   70 (248)
T ss_dssp             CEEEEEECCSCCGGGCC----SSCGGGSEETTEEHHHHHHHHHHHHTCSCEEEEESSCHH--HHHHHCC-----CTTEEE
T ss_pred             CceEEEECCCCCCCCCC----CCCeeeEEECChhHHHHHHHHHHHcCCcEEEeccCcccc--eeeeecc-----cccccc
Confidence            48999999999999964    579999999999999999999999999999999986632  3443322     223455


Q ss_pred             EEccCCcChHHHHHHHHhcCCC-CcEEEEcCCcccCCChhHHHHHH-HhcCceEEEEEeecccCCCccCCCCCCcccCCC
Q 012817           82 ATVPEDVGTAGALRAIAHHLTA-KDVLVVSGDLVSDVPPGAVTAAH-RRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK  159 (456)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~l~~-~~~lv~~~D~i~~~~l~~~l~~~-~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~  159 (456)
                      .......|+++++..+...+.. .++++..+|..+... ..+-..+ ........++.....  +               
T Consensus        71 ~~~~~~~g~~~~~~~~~~~i~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~---------------  132 (248)
T d2oi6a2          71 VLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISV-ETLQRLRDAKPQGGIGLLTVKLD--D---------------  132 (248)
T ss_dssp             EECSSCCCHHHHHHHHGGGSCTTSEEEEEETTCTTCCH-HHHHHHHHHCCTTSEEEEEEECS--C---------------
T ss_pred             cccccCcccHHHHHhhhhhhccccceeeecCccccccc-hhHHHHHHHhhccccceeEEEec--C---------------
Confidence            5566779999999999888754 457777777554332 1111111 222333334333322  2               


Q ss_pred             CCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHHhcCc----ccccccc
Q 012817          160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD----KFQSLKQ  235 (456)
Q Consensus       160 ~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~~~~~----~~~s~~~  235 (456)
                      +..++.+..+. +..+....+......               .....+..++.|+|+...|.+.+....    ....+.+
T Consensus       133 ~~~~~~~~~~~-~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~lt  196 (248)
T d2oi6a2         133 PTGYGRITREN-GKVTGIVEHKDATDE---------------QRQIQEINTGILIANGADMKRWLAKLTNNNAQGEYYIT  196 (248)
T ss_dssp             CTTSCEEEEET-TEEEEEECGGGCCTT---------------GGGCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCTT
T ss_pred             Ccccccccccc-CccceeeeccCCChh---------------hhhhhhhhhhhhccchHHHHHHHHHhhccccchhhhhh
Confidence            44556655543 333332221110000               012345678999999988877765321    1122346


Q ss_pred             chhHHHhHhc
Q 012817          236 DVLPYLVRSQ  245 (456)
Q Consensus       236 d~l~~l~~~~  245 (456)
                      |+++.+++++
T Consensus       197 d~~~~~~~~g  206 (248)
T d2oi6a2         197 DIIALAYQEG  206 (248)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHCC
Confidence            8888887755

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.57  E-value=1.7e-14  Score=128.15  Aligned_cols=67  Identities=21%  Similarity=0.247  Sum_probs=31.3

Q ss_pred             EECCCCEECCCcEEe-CeEECCCCEECCCcEEcCeEECCCCEECCCcEecCeEECCCCEECCCcEEcC
Q 012817          382 VIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       382 ~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~~~~~  448 (456)
                      .||++|.||+++.|. +|.|+++|.||.++.|.++.||++|.|++++.+.+++|++++.|++++.+.+
T Consensus       105 ~IG~~v~IG~~~~i~g~~~IGd~~~IG~gs~i~~~~IG~~~vIg~~svv~g~~i~~g~~I~~g~~v~g  172 (210)
T d1qrea_         105 YIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAAIGVTIPDGRYIPAGMVVTS  172 (210)
T ss_dssp             EECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECTTCEECTTCEEESCEECTTBEECTTCEECS
T ss_pred             eeccccccccccccccCCcccCCcEeeCCccccccccccCcEEecCcEecCcEeCCCcEECCCcEEeC
Confidence            444444444444443 3444444444444444444444444444444444444444444444444433

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.55  E-value=3.2e-14  Score=126.38  Aligned_cols=106  Identities=13%  Similarity=0.264  Sum_probs=84.4

Q ss_pred             ceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-----eeEECCCCEECCCcEEe------------------------
Q 012817          346 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-----RSVIGRHCRIGSNVKVV------------------------  396 (456)
Q Consensus       346 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-----~s~Ig~~~~ig~~~~i~------------------------  396 (456)
                      ..|+|++.|++++.|.+++.||++|.|+++|.|+     +..||++|.|+++|.|+                        
T Consensus        23 p~I~~~a~I~p~A~i~g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~  102 (210)
T d1qrea_          23 PVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEY  102 (210)
T ss_dssp             CEECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEE
T ss_pred             CccCCCCEECCCCEEecceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCcccccccccc
Confidence            3456666666666555566666666666666663     36889999999998883                        


Q ss_pred             CeEECCCCEECCCcEEc-CeEECCCCEECCCcEecCeEECCCCEECCCcEEcCCee
Q 012817          397 NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESL  451 (456)
Q Consensus       397 ~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~~~~~~~~  451 (456)
                      ++.|+++|.||.++.|. +|.||++|.||.+++|.++.||++++|++++.+.+..+
T Consensus       103 ~~~IG~~v~IG~~~~i~g~~~IGd~~~IG~gs~i~~~~IG~~~vIg~~svv~g~~i  158 (210)
T d1qrea_         103 AVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAAIGVTI  158 (210)
T ss_dssp             SEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECTTCEECTTCEEESCEE
T ss_pred             ceeeccccccccccccccCCcccCCcEeeCCccccccccccCcEEecCcEecCcEe
Confidence            47899999999999996 79999999999999999999999999999888876544

>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: TTHA0179-like
domain: Uncharacterized protein TTHA0179
species: Thermus thermophilus [TaxId: 274]

Probab=99.51  E-value=9.7e-15  Score=132.13  Aligned_cols=114  Identities=25%  Similarity=0.309  Sum_probs=89.5

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |+..|||||||+|+||+++ + ..||+|+|++|||||+|+++++..++++++++++++...    .            ..
T Consensus         1 M~~~avIlA~G~~~r~~r~-g-~~~K~L~~i~Gkpli~~~~~~l~~~~~~~vvv~~~~~~~----~------------~~   62 (231)
T d2dpwa1           1 MRPSAIVLAGGKEAWAERF-G-VGSKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLV----P------------AP   62 (231)
T ss_dssp             CCCEEEEECCCBCSGGGTT-T-CSBGGGSEETTEETHHHHHHHHHHTTCEEEEESCCSSCS----S------------CC
T ss_pred             CCceEEEECCCCCCCCCCC-C-CCCceeeEECCeeHHHHHHHHHHhcCCCeEEeeeecccc----c------------ee
Confidence            8999999999999999888 5 357999999999999999999999999888887764321    0            01


Q ss_pred             EEEccCCcChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHHHHhcCceE
Q 012817           81 VATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVV  133 (456)
Q Consensus        81 ~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~  133 (456)
                      ........|+.++++.+++.+. +.+++++||  ++....++.+++.+.+.++.+
T Consensus        63 ~~~~~~~~~~~~~v~~al~~~~-~~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~  116 (231)
T d2dpwa1          63 ALTLPDRGGLLENLEQALEHVE-GRVLVATGDIPHLTEEAVRFVLDKAPEAALVY  116 (231)
T ss_dssp             SEEECCCSSHHHHHHHHHHTCC-SEEEEEETTCTTCCHHHHHHHHHHCCSCSEEE
T ss_pred             eeecccchHHHHHHHHHHHhhc-CceEEeeCCCccCCHHHHHHHHHHhhhcCceE
Confidence            1112456789999999999885 689999999  455667888888766554443

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.51  E-value=1.9e-13  Score=119.54  Aligned_cols=96  Identities=15%  Similarity=0.195  Sum_probs=46.5

Q ss_pred             ceeCCCCEeCCCcEEC--CCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-CeEECCCC
Q 012817          346 NIIHPSAELGSKTTVG--PHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNA  421 (456)
Q Consensus       346 ~~i~~~~~i~~~~~i~--~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~~ii~~~~  421 (456)
                      .+|+|++.|++++.|+  .++.|+++|.|++++     .||++|.|+.++.|. +|.|++++.++.++.+. ++.|+++|
T Consensus        75 ~~I~p~a~I~~~~~I~~g~g~~I~~~~~I~~~~-----~Ig~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~g~v~Ig~~~  149 (193)
T d3bswa1          75 NLIHKSALISPSAIVEENAGILIMPYVVINAKA-----KIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNC  149 (193)
T ss_dssp             CEECTTCEECTTSEECTTSCCEECTTCEECTTC-----EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred             eecCCCcEEeeeeEEccccCceEeeeeeecCCc-----eeeeccccccccccceeeeccccccccccccccccceeeccc
Confidence            3455555555555552  234555555554444     344444444444444 44445555555555543 45555555


Q ss_pred             EECCCcEe-cCeEECCCCEECCCcEE
Q 012817          422 QLQERVAL-KDCQVGQGYVVSAGCEY  446 (456)
Q Consensus       422 ~I~~~~~i-~~~~i~~~~~v~~~~~~  446 (456)
                      .||.+++| +++.||++++|++|+.+
T Consensus       150 ~IG~~s~I~~~v~Ig~~~~IgagsvV  175 (193)
T d3bswa1         150 FLGINSCVLPNLSLADDSILGGGATL  175 (193)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEE
T ss_pred             cCCceeeEcCCeEECCCCEECCCCEE
Confidence            55555543 24455555555555444

>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=1.9e-14  Score=129.53  Aligned_cols=121  Identities=19%  Similarity=0.234  Sum_probs=86.1

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHC-CCCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~-gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i   79 (456)
                      |+..|||||||.|+||    ....||+|+|++|||||+|+|+.+.++ ++++++|++++...  .+.......   ...+
T Consensus         2 M~i~AIILAaG~gtRm----~~~~pK~L~~i~gkplI~~~i~~~~~~~~i~~Iivv~~~~~~--~~~~~~~~~---~~~v   72 (225)
T d1i52a_           2 LDVCAVVPAAGFGRRM----QTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDS--RFAQLPLAN---HPQI   72 (225)
T ss_dssp             CCEEEEEEECCCCGGG----CCSSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCC--SGGGSGGGG---CTTE
T ss_pred             CCEEEEEeCCCcceeC----CCCCCcceeEECCEEHHHHHHHHHHhCccccccccccchhhh--hhhhhhhcc---cccc
Confidence            8899999999999999    677899999999999999999999887 58899999875422  222222221   1223


Q ss_pred             EEEEccCCcChHHHHHHHHhcCCCCc-EEEEcCC--cccCCChhHHHHHHHhcCce
Q 012817           80 EVATVPEDVGTAGALRAIAHHLTAKD-VLVVSGD--LVSDVPPGAVTAAHRRHDAV  132 (456)
Q Consensus        80 ~~~~~~~~~gt~~al~~~~~~l~~~~-~lv~~~D--~i~~~~l~~~l~~~~~~~a~  132 (456)
                      .+.  ....+..++++.+...+.+.+ +++..+|  ++...++..+++........
T Consensus        73 ~~~--~~~~~~~~sv~~~~~~~~~~~~vl~~~~~~p~i~~~~~~~~~~~~~~~~~~  126 (225)
T d1i52a_          73 TVV--DGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTG  126 (225)
T ss_dssp             EEE--ECCSSHHHHHHHHHHTSTTCSEEEECCTTCTTCCHHHHHHHHGGGGTCSSC
T ss_pred             ccc--cCCcchhHHHHhhhcccCccceeeeeccCCCCCCHHHHHHHHhhhhhcccc
Confidence            333  344567789999988886544 6666777  44445577776665554433

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=99.47  E-value=3.5e-13  Score=123.71  Aligned_cols=37  Identities=22%  Similarity=0.624  Sum_probs=15.8

Q ss_pred             cCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeE
Q 012817          342 SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV  378 (456)
Q Consensus       342 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i  378 (456)
                      +++.++|+|++.||+++.|+++|+|++++.||++|.|
T Consensus         8 I~p~a~I~~~~~Ig~~v~Ig~~~~I~~~v~Ig~~~~I   44 (262)
T d2jf2a1           8 VHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVL   44 (262)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEE
T ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEE
Confidence            3344444444444444444444444444444333333

>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=99.45  E-value=1.8e-13  Score=123.23  Aligned_cols=123  Identities=17%  Similarity=0.257  Sum_probs=83.3

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~   81 (456)
                      +.+||||||.|+||    ....||+|++++|||||+|+|+.+.+++ +++++|++++. ..+.++++...     ....+
T Consensus         5 i~~IIlAaG~GtRm----~~~~pK~l~~l~Gkpli~~~l~~~~~~~~~~~Iivv~~~~-~~~~~~~~~~~-----~~~~~   74 (226)
T d1w77a1           5 VSVILLAGGQGKRM----KMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPF-FRDIFEEYEES-----IDVDL   74 (226)
T ss_dssp             EEEEEECCC-----------CCCTTTSEETTEEHHHHHHHHHHTCTTEEEEEEECCGG-GTHHHHTTTTS-----CSSEE
T ss_pred             eEEEEeCCccCccC----cCCCCceeeEECCeeHHHHHHHHHHhhccccceeeccchh-hhhhhhccccc-----ccccc
Confidence            57899999999999    6679999999999999999999999885 67888887633 22344443322     22233


Q ss_pred             EEccCCcChHHHHHHHHhcCC--CCcEEEEcCC--cccCCChhHHHHHHHhcCceEEE
Q 012817           82 ATVPEDVGTAGALRAIAHHLT--AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA  135 (456)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~l~--~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~  135 (456)
                      ........+.++++.+++.+.  .+.+++..||  ++....+..+++.+.+.++.+..
T Consensus        75 ~~~~gg~~r~~sv~~~l~~~~~~~~~Vli~d~~~P~i~~~~i~~l~~~~~~~~~~i~~  132 (226)
T d1w77a1          75 RFAIPGKERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLG  132 (226)
T ss_dssp             EEECCCSSHHHHHHHHHHTSCTTCSEEEEEETTCTTCCHHHHHHHHHHHHHHSEEEEE
T ss_pred             ccccccchhhhhhhhhHhhhccccccceecccccccccHHHhhhhhhhhhccCceeec
Confidence            333444567889999888775  3457888888  55556788899888877665443

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.45  E-value=9.1e-13  Score=113.18  Aligned_cols=107  Identities=17%  Similarity=0.281  Sum_probs=84.7

Q ss_pred             cCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEee----eEECCCCEECCCcEEeC-----eEECCCCEECCCcEE
Q 012817          342 SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR----SVIGRHCRIGSNVKVVN-----SVVMNHVTIGDGCSI  412 (456)
Q Consensus       342 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~----s~Ig~~~~ig~~~~i~~-----s~i~~~~~ig~~~~i  412 (456)
                      ......|++++.|++.+.|.+++.||++|.|+++|.|..    ..||++|.+++++.+..     +++++++.++.++.+
T Consensus         9 ~~~~~~Ig~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~   88 (172)
T d1xhda_           9 KEKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVIL   88 (172)
T ss_dssp             TTBCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEE
T ss_pred             CCcCCEECCCcEECCCCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeeeeeeeeeecc
Confidence            345567777888888888878888888888888888863    59999999999999874     578888888888888


Q ss_pred             cCeEECCCCEECCCcEe-cCeEECCCCEECCCcEEcC
Q 012817          413 QGSVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       413 ~~~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~~  448 (456)
                      .++.|++++.|+.+++| .+++||++++|++++.+..
T Consensus        89 ~~~~i~~~~~ig~~~~i~~gv~IG~~~~IgagsvV~~  125 (172)
T d1xhda_          89 HSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQ  125 (172)
T ss_dssp             ESCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             cccccccceEEecccEeeCCcEEcCcccccceEEEee
Confidence            88888888888888876 3677777777777776653

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=99.43  E-value=1.5e-12  Score=119.43  Aligned_cols=43  Identities=26%  Similarity=0.437  Sum_probs=20.0

Q ss_pred             cCCCcccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeE
Q 012817          336 LSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV  378 (456)
Q Consensus       336 ~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i  378 (456)
                      +.++..+++.+.|++++.|++++.|++++.||++|.|++++.|
T Consensus         8 I~p~a~I~~~~~Ig~~v~Ig~~~~I~~~v~Ig~~~~I~~~~~I   50 (262)
T d2jf2a1           8 VHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVV   50 (262)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEE
T ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeCCEEE
Confidence            3333444444444444444444444444444444444444444

>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thermotoga maritima [TaxId: 2336]

Probab=99.43  E-value=1.3e-13  Score=123.66  Aligned_cols=120  Identities=19%  Similarity=0.276  Sum_probs=82.6

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHC-CCCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~-gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i   79 (456)
                      |++ |||||||.|+||    +...||+|++++|||||+|+|+.+.++ ++++++|+++.... +.+..    .......+
T Consensus         3 M~i-AIILAaG~gtRm----~~~~pK~l~~i~gkpli~~~i~~~~~~~~~~~Iivv~~~~~~-~~~~~----~~~~~~~~   72 (221)
T d1vpaa_           3 MNV-AILLAAGKGERM----SENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWF-EVVEK----RVFHEKVL   72 (221)
T ss_dssp             CEE-EEEEECCCCGGG----CCSSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGH-HHHHT----TCCCTTEE
T ss_pred             CeE-EEEccCcCcccC----CCCCCcceeEECCEEHHHHHHHHHHhccccccceEEecchhh-hHHHh----hhcccccc
Confidence            555 799999999999    667899999999999999999999987 47999999864321 22222    11112223


Q ss_pred             EEEEccCCcChHHHHHHHHhc---CCCCcEEEEcCC--cccCCChhHHHHHHHhcCce
Q 012817           80 EVATVPEDVGTAGALRAIAHH---LTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAV  132 (456)
Q Consensus        80 ~~~~~~~~~gt~~al~~~~~~---l~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~  132 (456)
                      .+.  ....+...++..++..   ...+.++++.||  ++....+..+++.+.+....
T Consensus        73 ~~~--~~~~~~~~s~~~~~~~~~~~~~~~v~~~~~d~p~~~~~~i~~li~~~~~~~~~  128 (221)
T d1vpaa_          73 GIV--EGGDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGAA  128 (221)
T ss_dssp             EEE--ECCSSHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSEE
T ss_pred             ccc--cccccccchHHHHHHHHHhcCCCcEEEeccccccccHHHHHhhhhhhcccccc
Confidence            333  3344445555544432   235678999999  45556788888888776543

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.43  E-value=2.2e-13  Score=112.08  Aligned_cols=66  Identities=27%  Similarity=0.600  Sum_probs=37.0

Q ss_pred             CCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCC-------------------CEECCCcEEcCeEECCCCEE
Q 012817          363 HCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNH-------------------VTIGDGCSIQGSVICSNAQL  423 (456)
Q Consensus       363 ~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~-------------------~~ig~~~~i~~~ii~~~~~I  423 (456)
                      +++|+++|.|+ ++.|.+|+||++|.||+++.|++++++++                   +.||++|.|++++|+++|+|
T Consensus        14 ~s~Ig~g~~I~-~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~~~iIg~~~~I   92 (135)
T d1yp2a1          14 DSVIGEGCVIK-NCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARI   92 (135)
T ss_dssp             EEEECTTCEEE-EEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEE
T ss_pred             eCEECCCCEEe-CCEEeccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEeccceecCCCEE
Confidence            34455555553 34445555555555555555555544433                   55666666666666666666


Q ss_pred             CCCcEe
Q 012817          424 QERVAL  429 (456)
Q Consensus       424 ~~~~~i  429 (456)
                      |+++++
T Consensus        93 G~g~~i   98 (135)
T d1yp2a1          93 GDNVKI   98 (135)
T ss_dssp             CTTCEE
T ss_pred             CCCcEE
Confidence            666665

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.42  E-value=2e-12  Score=112.87  Aligned_cols=112  Identities=23%  Similarity=0.363  Sum_probs=88.2

Q ss_pred             cccCCCceeCCCCEeC--CCcEECCCCEECCCCEECCCCeEe-eeEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-C
Q 012817          340 NFSAQNNIIHPSAELG--SKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-G  414 (456)
Q Consensus       340 ~~~~~~~~i~~~~~i~--~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~  414 (456)
                      .++++.++|++.+.|+  .++.|++++.|+++|.||++|.|. +++|+++|.||+++.+. ++.+..+++||++|+|+ +
T Consensus        75 ~~I~p~a~I~~~~~I~~g~g~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~g~v~Ig~~~~IG~~  154 (193)
T d3bswa1          75 NLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGIN  154 (193)
T ss_dssp             CEECTTCEECTTSEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred             eecCCCcEEeeeeEEccccCceEeeeeeecCCceeeeccccccccccceeeeccccccccccccccccceeeccccCCce
Confidence            4678899999999994  578999999999999999999886 48999999999999988 77788888888888886 8


Q ss_pred             eEECCCCEECCCcEecCeEECCCCEECCCcEEcCCeeeeccC
Q 012817          415 SVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLARKEK  456 (456)
Q Consensus       415 ~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~~~~~~~~~~~~~  456 (456)
                      |+|.+++.||     ++|+|++|++|..+..-.......|+|
T Consensus       155 s~I~~~v~Ig-----~~~~IgagsvV~~dv~~~~~~~G~PAk  191 (193)
T d3bswa1         155 SCVLPNLSLA-----DDSILGGGATLVKNQDEKGVFVGVPAK  191 (193)
T ss_dssp             CEECTTCEEC-----TTCEECTTCEECSCBCSCCEECCCCCC
T ss_pred             eeEcCCeEEC-----CCCEECCCCEECcCCCCCcEEEEeCCE
Confidence            8888888888     456677777776665433322335554

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=2.9e-13  Score=99.40  Aligned_cols=66  Identities=12%  Similarity=0.268  Sum_probs=47.8

Q ss_pred             ECCCCEECCCCEECCCCeEe-eeEECCCCEECCCcEEeCeEECCCCEECCCcEEcCeEECCCCEECC
Q 012817          360 VGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQE  425 (456)
Q Consensus       360 i~~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~~~ii~~~~~I~~  425 (456)
                      |.+++.||++|.|++++.|+ ++.||+||.||++|.|.+|.|+++++|+++|.|.+|+|+++|.||+
T Consensus        11 I~g~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i~~~~Ig~~~~IGP   77 (78)
T d1fxja1          11 LRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGP   77 (78)
T ss_dssp             EEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECTTCEEESEEECTTCEESC
T ss_pred             EeccEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCCCEEcCCcEEECCEECCCCEECc
Confidence            34445555555555555555 3678888888888888888888888888888888888888877774

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=99.39  E-value=4.2e-12  Score=116.33  Aligned_cols=36  Identities=8%  Similarity=0.145  Sum_probs=25.3

Q ss_pred             CeEECCCCEECCCcEec-CeEECCCCEECCCcEEcCC
Q 012817          414 GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGE  449 (456)
Q Consensus       414 ~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~~~  449 (456)
                      .+.|+++|.||.++.|. ++.||++++|++++.+...
T Consensus       139 ~v~Ig~~v~IG~~s~I~~gv~IG~~a~IgagSvV~kd  175 (259)
T d1j2za_         139 HIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKD  175 (259)
T ss_dssp             TCEECSSCEECTTCEECTTCEECTTCEECTTCEECSB
T ss_pred             cccccccceecceeeeecccEeccceeeeeeeeeccc
Confidence            35677777777777654 6788888888887776553

>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain
species: Campylobacter jejuni [TaxId: 197]

Probab=99.37  E-value=6.8e-13  Score=116.86  Aligned_cols=113  Identities=19%  Similarity=0.260  Sum_probs=86.5

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~   81 (456)
                      +.+||||||.|+||    +...||+|++++|+|||+|+++.+.+.. +++++|++...   +.++.+.       ..+.+
T Consensus         2 is~IILAaG~g~Rm----g~~~pK~~~~i~gkpii~~~l~~~~~~~~~~~Ivvv~~~~---~~~~~~~-------~~~~~   67 (205)
T d1w55a1           2 MSLIMLAAGNSTRF----NTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNI---TYMKKFT-------KNYEF   67 (205)
T ss_dssp             EEEEEECCSCCTTT----CSSSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEESCH---HHHHTTC-------SSSEE
T ss_pred             eEEEEeCCccCeeC----CcCCCceeEEECCEEHHHHHHHHHHhhccccccccccccc---ccccccc-------ccccc
Confidence            57899999999999    6778999999999999999999998865 67887776532   2233211       12344


Q ss_pred             EEccCCcChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHHHHhcCc
Q 012817           82 ATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDA  131 (456)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a  131 (456)
                      +  ....+..++++.+++.+..+.+++..||  ++....+.++++.+.+.++
T Consensus        68 v--~Gg~~r~~Sv~~gl~~~~~~~VlIhd~~rP~i~~~~i~~li~~~~~~~~  117 (205)
T d1w55a1          68 I--EGGDTRAESLKKALELIDSEFVMVSDVARVLVSKNLFDRLIENLDKADC  117 (205)
T ss_dssp             E--ECCSSHHHHHHHHHTTCCSSEEEEEETTCTTCCHHHHHHHHTTGGGCSE
T ss_pred             c--ccccchhhhhhhhhhhhhhcceeeeccCcccCcHHHHHHHHhhhhcccc
Confidence            3  3556678999999999977778999999  5666678889888776554

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=1.8e-12  Score=95.01  Aligned_cols=63  Identities=25%  Similarity=0.464  Sum_probs=57.6

Q ss_pred             eeEECCCCEECCCcEEe-CeEECCCCEECCCcEEcCeEECCCCEECCCcEecCeEECCCCEECC
Q 012817          380 RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSA  442 (456)
Q Consensus       380 ~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~~~ii~~~~~I~~~~~i~~~~i~~~~~v~~  442 (456)
                      +..||++|.|++++.|+ ++.|+++|+||++|.|.+|.|++++.|+++++|++|+|++++.|||
T Consensus        14 ~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i~~~~Ig~~~~IGP   77 (78)
T d1fxja1          14 TLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGP   77 (78)
T ss_dssp             EEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECTTCEEESEEECTTCEESC
T ss_pred             cEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCCCEEcCCcEEECCEECCCCEECc
Confidence            46889999999999998 7889999999999999999999999999999999999999999986

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=99.36  E-value=5.2e-12  Score=115.73  Aligned_cols=53  Identities=23%  Similarity=0.569  Sum_probs=24.7

Q ss_pred             CCCceeCCCCEeCCCcEECCCCEECCCCEECCCC------eEe-eeEECCCCEECCCcEE
Q 012817          343 AQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKC------SVK-RSVIGRHCRIGSNVKV  395 (456)
Q Consensus       343 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~------~i~-~s~Ig~~~~ig~~~~i  395 (456)
                      ++.++|+|+|.|++++.||++|+|++++.|+++|      .|. ++.||++|.|.+++.|
T Consensus         4 h~sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~I   63 (259)
T d1j2za_           4 AKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVL   63 (259)
T ss_dssp             CTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEE
T ss_pred             CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCccEE
Confidence            3444444444444444444444444444444444      333 2455555555554444

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.36  E-value=6.8e-12  Score=109.85  Aligned_cols=34  Identities=21%  Similarity=0.336  Sum_probs=26.1

Q ss_pred             eEECCCCEECCCcEe-cCeEECCCCEECCCcEEcC
Q 012817          415 SVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       415 ~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~~  448 (456)
                      ++|+++|.||.++.| .++.||++++|++++.+..
T Consensus       143 ~~Ig~~~~iG~~~~I~~gv~IG~~s~IgagsvVtk  177 (196)
T d1g97a1         143 TVIGNNVFVGSNSTIIAPVELGDNSLVGAGSTITK  177 (196)
T ss_dssp             EEECTTCEECTTCEEESSCEECTTCEECTTCEECS
T ss_pred             eEEecCCEEeeeeEEcCCcEECCCCEECCCCEECc
Confidence            557777888888855 5788888888888888753

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.30  E-value=1.9e-11  Score=104.85  Aligned_cols=56  Identities=20%  Similarity=0.306  Sum_probs=44.1

Q ss_pred             ccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe----eeEECCCCEECCCcEEe
Q 012817          341 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKVV  396 (456)
Q Consensus       341 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~----~s~Ig~~~~ig~~~~i~  396 (456)
                      +.+.+..|+|++.|++++.|++++.||++|.|+++|.|.    +..|+++|.++..+.+.
T Consensus         6 ~~g~~~~I~~~~~I~~~a~I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~   65 (173)
T d1v3wa_           6 INGKKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIH   65 (173)
T ss_dssp             BTTBCCEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEE
T ss_pred             CCCCCCEECcCcEECCCCEEeCceEECCCCEECCCccccccccccccccccccccccccc
Confidence            344566778888888888888888888888888888885    35899999999998875

>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=99.30  E-value=2.6e-12  Score=115.36  Aligned_cols=124  Identities=17%  Similarity=0.195  Sum_probs=72.2

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i   79 (456)
                      ++.-|||||||.|+||    +...||+|++++|+|||+|+++.+.+++ ++.++|++...+.   +.......+. .  +
T Consensus         2 ~K~iAIIlAaG~gtRm----~~~~pK~l~~i~gkpli~~~i~~~~~~~~~~~iivv~~~~~~---~~~~~~~~~~-~--~   71 (226)
T d1vgwa_           2 RKNIALIPAAGIGVRF----GADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDT---FADKVQTAFP-Q--V   71 (226)
T ss_dssp             CCEEEEEECC--------------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTCS---THHHHHHHCT-T--S
T ss_pred             CceEEEEeCCCCcccC----CcCCCeeeeEECCEEHHHHHHHHHHhCCCccccceecchhhh---hhhhhccccc-c--e
Confidence            3566999999999999    6778999999999999999999999886 5777777764421   2222222211 1  2


Q ss_pred             EEEEccCCcChHHHHHHHHhcC-------CCCcEEEEcCC--cccCCChhHHHHHHHhcCceEEE
Q 012817           80 EVATVPEDVGTAGALRAIAHHL-------TAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA  135 (456)
Q Consensus        80 ~~~~~~~~~gt~~al~~~~~~l-------~~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~  135 (456)
                      ... .........+++.++..+       ..+.+++..||  ++....+..+++.+...+....+
T Consensus        72 ~~~-~~g~~~~~~s~~~~l~~~~~~~~~~~~~~v~~~~~~~P~i~~~~i~~~i~~~~~~~~~~i~  135 (226)
T d1vgwa_          72 RVW-KNGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGIL  135 (226)
T ss_dssp             EEE-CCCCSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEE
T ss_pred             eec-cccccccchhhhHHHHHHHHhcccccccceeecccccccCcHHHHHHHHhhhcccccceee
Confidence            222 223333344444333221       23457788888  55556788999988777665443

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=1.7e-11  Score=107.09  Aligned_cols=53  Identities=21%  Similarity=0.303  Sum_probs=35.5

Q ss_pred             cCCCceeCCCCEe--CCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeC
Q 012817          342 SAQNNIIHPSAEL--GSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVN  397 (456)
Q Consensus       342 ~~~~~~i~~~~~i--~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~  397 (456)
                      ++++++|+|++.+  |.+++||++++|+.+|+|.+++   ...||++|.||+++.|.+
T Consensus        57 iG~~~~I~p~~~i~~G~nv~IG~~~~I~~~~~I~~~~---~i~IG~~v~Ig~~v~I~~  111 (200)
T d1krra_          57 VGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDY---TVTIGDNVLIAPNVTLSV  111 (200)
T ss_dssp             CCSSCEECSCEEESCSTTEEECSSCEECSCEEEECSS---CEEECSSCEECSSCEEES
T ss_pred             CCCCCEEcCCEEEecCCccEECCccEECceEEEecCC---CcEeCCCccccceeEEec
Confidence            4466777776665  4555555555555555554433   348999999999999974

>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Molybdenum cofactor biosynthesis protein MobA
domain: Molybdenum cofactor biosynthesis protein MobA
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=7e-12  Score=108.99  Aligned_cols=109  Identities=17%  Similarity=0.260  Sum_probs=76.0

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~   81 (456)
                      .+.|||||||+|+||    + +.+|+|++++|+|||+|+++.+... +.+++|+++...  +....       ....+..
T Consensus         3 ~i~~iILAgG~ssRm----G-~~~K~ll~~~g~~ll~~~l~~l~~~-~~~ivv~~~~~~--~~~~~-------~~~~v~~   67 (188)
T d1e5ka_           3 TITGVVLAGGKARRM----G-GVDKGLLELNGKPLWQHVADALMTQ-LSHVVVNANRHQ--EIYQA-------SGLKVIE   67 (188)
T ss_dssp             SEEEEEECCCCCSSS----C-SSCGGGSEETTEEHHHHHHHHHHHH-CSCEEEECSSSH--HHHHT-------TSCCEEC
T ss_pred             ceeEEEEcCCCCcCC----C-CCCcccCEECCEehhHHHHhhhccc-ccccccccCccH--Hhhhh-------cCCCccc
Confidence            467999999999999    3 2589999999999999999999876 577888776442  11111       1111222


Q ss_pred             EEccCCcChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHHHH
Q 012817           82 ATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAA  125 (456)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l~~  125 (456)
                      ....+..+...++..+......+.+++++||  ++....+..+++.
T Consensus        68 d~~~~~~~~~~g~~~~~~~~~~~~vlv~~~D~P~i~~~~i~~L~~~  113 (188)
T d1e5ka_          68 DSLADYPGPLAGMLSVMQQEAGEWFLFCPCDTPYIPPDLAARLNHQ  113 (188)
T ss_dssp             CCTTCCCSHHHHHHHHHHHCCSSEEEEEETTCTTCCTTHHHHHHHT
T ss_pred             cccccccchhHHHHHHHHhcccceEEEeccCCCCCCHHHHHHHHHh
Confidence            1123346777888888777777789999999  3444446666654

>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KdsB [TaxId: 562]

Probab=99.25  E-value=6.5e-11  Score=107.36  Aligned_cols=190  Identities=16%  Similarity=0.168  Sum_probs=107.5

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~   82 (456)
                      +-|||+|.|.++|+       ..|+|.+++|+|||+|+++++.++++++|+|.+.+..    +..+....   ...+.+.
T Consensus         2 ~i~iIpAR~gSkri-------p~KnL~~i~GkpLI~~~i~~a~~s~i~~iiVsTd~~~----i~~~~~~~---g~~v~~~   67 (246)
T d1vh1a_           2 FVVIIPARYASTRL-------PGKPLVDINGKPMIVHVLERARESGAERIIVATDHED----VARAVEAA---GGEVCMT   67 (246)
T ss_dssp             CEEEEECCCCCC---------CCTTTCEETTEEHHHHHHHHHHHTTCSEEEEEESCHH----HHHHHHHT---TCEEEEC
T ss_pred             EEEEEecCCCCcCC-------CCchhhhcCCccHHHHHHHHHHHcCCCcEEEEecCcc----ccchhhcc---cccceee
Confidence            56899999999998       3499999999999999999999999999999997553    33333221   1122222


Q ss_pred             EccCCcChHHHHHHHHhcCC--CCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCC
Q 012817           83 TVPEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK  158 (456)
Q Consensus        83 ~~~~~~gt~~al~~~~~~l~--~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~  158 (456)
                      ..+...++......+.....  .+.++.+.||.  +...++..+++.+.....+............  ..         .
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~pl~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~--~~---------~  136 (246)
T d1vh1a_          68 RADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAE--EA---------F  136 (246)
T ss_dssp             C-----CHHHHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHSSSSEEEEEEECCCHH--HH---------T
T ss_pred             cccccccchHHHHHHHhhcccccceeeeeccccccchhhHHHHHhhhhcccccccccccccccchh--cc---------c
Confidence            12222455444433333332  23578888993  4445788888888888777655554433111  00         0


Q ss_pred             CCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEEecCCccceEEeechHHHHHHH
Q 012817          159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL  224 (456)
Q Consensus       159 ~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~giYi~~~~vl~~~~  224 (456)
                       .....-+..+.++..+.+........+      ..............+...|+|+|++..|....
T Consensus       137 -~~~~vk~v~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~  195 (246)
T d1vh1a_         137 -NPNAVKVVLDAEGYALYFSRATIPWDR------DRFAEGLETVGDNFLRHLGIYGYRAGFIRRYV  195 (246)
T ss_dssp             -CTTSCEEEECTTSBEEEEESSCSSCCH------HHHSSCCCCCCSCCEEEEEEEEEEHHHHHHHH
T ss_pred             -CCCcceeeecccCcccccccccchhhh------hhhhhhhhccchhhheecceeeechhhhhhhc
Confidence             111123455666665544332111111      11000000111233457799999999987664

>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KpsU [TaxId: 562]

Probab=99.25  E-value=1.3e-10  Score=105.11  Aligned_cols=116  Identities=18%  Similarity=0.206  Sum_probs=82.1

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHC-CCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~-gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      +.-|||+|.|.++||       ..|+|++++|+|||+|+++++.++ ++++|+|++....    +.......     +.+
T Consensus         2 k~i~iIpAR~~SkRl-------~~Knl~~i~GkPli~~~i~~a~~~~~~d~Iiv~td~~~----i~~~~~~~-----~~~   65 (245)
T d1h7ea_           2 KAVIVIPARYGSSRL-------PGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPR----VEQAVQAF-----GGK   65 (245)
T ss_dssp             CEEEEEECCSCCSSS-------TTGGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESCHH----HHHHHHHT-----TCE
T ss_pred             CEEEEEcCCCCCcCC-------CCccccccCCccHHHHHHHHHHhCCCCCeEEEeccccc----chhhhhhc-----Cce
Confidence            456899999999998       459999999999999999999887 4788888887443    22222221     233


Q ss_pred             EEEccCC-cChHHHHHHHHhcCCCCcEEEEcCCc--ccCCChhHHHHHHHhcCceE
Q 012817           81 VATVPED-VGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVV  133 (456)
Q Consensus        81 ~~~~~~~-~gt~~al~~~~~~l~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~  133 (456)
                      +...... .++.+.+..+.+.+..+.++.+.+|.  +....+..+++.+.......
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~d~vv~l~~~~p~~~~~~i~~~~~~~~~~~~~~  121 (245)
T d1h7ea_          66 AIMTRNDHESGTDRLVEVMHKVEADIYINLQGDEPMIRPRDVETLLQGMRDDPALP  121 (245)
T ss_dssp             EEECCSCCSSHHHHHHHHHHHSCCSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCC
T ss_pred             EEEecCccccccHHHHHHHHhcCCCEEEEecchhhhcccccchhhhhccccccccc
Confidence            4443444 45556777777888777788889994  33446888888877665443

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.20  E-value=1.2e-10  Score=99.71  Aligned_cols=75  Identities=16%  Similarity=0.328  Sum_probs=56.5

Q ss_pred             ECCCCEECCCCeEee-----eEECCCCEECCCcEEeCeEECCCCEECCCcEEc-CeEECCCCEECCCcEec-CeEECCCC
Q 012817          366 LGEGSQMGDKCSVKR-----SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGY  438 (456)
Q Consensus       366 i~~~~~I~~~~~i~~-----s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~  438 (456)
                      ||+++.+++++.+..     ++|++++.++.++.+.++.|++++.||.++.|. ++.||++|.|+++++|. ++.|++++
T Consensus        54 IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~i~~~~~ig~~~~i~~gv~IG~~~~IgagsvV~~~~~i~~~~  133 (172)
T d1xhda_          54 IGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNT  133 (172)
T ss_dssp             ECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTE
T ss_pred             ccceeeeeeeceeccCCcCCeeeeeeeeeeeeecccccccccceEEecccEeeCCcEEcCcccccceEEEeeCeEECCCe
Confidence            344444455555543     578888888888888888888888888888885 88888888888888775 56777777


Q ss_pred             EE
Q 012817          439 VV  440 (456)
Q Consensus       439 ~v  440 (456)
                      ++
T Consensus       134 v~  135 (172)
T d1xhda_         134 LA  135 (172)
T ss_dssp             EE
T ss_pred             EE
Confidence            66

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=6.3e-11  Score=101.88  Aligned_cols=99  Identities=20%  Similarity=0.375  Sum_probs=58.8

Q ss_pred             ceeCCCCE--eCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-CeEECCCC
Q 012817          346 NIIHPSAE--LGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNA  421 (456)
Q Consensus       346 ~~i~~~~~--i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~~ii~~~~  421 (456)
                      .+|.|+..  +|.++.||++++|+.+|+|.+.+.|   .||++|.|+++|.|. ++.+.+.+....++.+. .++|+++|
T Consensus        59 ~~i~~p~~~~~G~ni~IG~~~~I~~~~~I~d~~~I---~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Ig~~~  135 (182)
T d1ocxa_          59 AYIEPTFRCDYGYNIFLGNNFFANFDCVMLDVCPI---RIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNV  135 (182)
T ss_dssp             EEECSCEEESSSTTEEECSSEEECSSEEEECSSCE---EECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTC
T ss_pred             eEEECCEEEEeccceeECCccEECCCcEEecCCeE---EECCCeEECcCceEeecccccceeeeeccceEcceeEECceE
Confidence            34555433  4566666666777666666655543   799999999999987 34455544444444443 34455555


Q ss_pred             EECCCcEec-CeEECCCCEECCCcEEc
Q 012817          422 QLQERVALK-DCQVGQGYVVSAGCEYK  447 (456)
Q Consensus       422 ~I~~~~~i~-~~~i~~~~~v~~~~~~~  447 (456)
                      .||.+++|. ++.||++++|++|+.+.
T Consensus       136 ~iG~~~~I~~Gv~IG~~~vIgagsvV~  162 (182)
T d1ocxa_         136 WIGGRAVINPGVTIGDNVVVASGAVVT  162 (182)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             eeCceeeccCcEEECCCCEECCCCEEc
Confidence            555555442 45555555555555543

>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.16  E-value=2.2e-10  Score=104.24  Aligned_cols=193  Identities=16%  Similarity=0.203  Sum_probs=109.3

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceEEE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~~   82 (456)
                      +-|||||.|.++|+       ..|.|.+++|+|||+|+++.+.++++++|+|++.+++.......+       ...+.+.
T Consensus         2 ~~~iIpAR~gSkRl-------p~Knl~~i~GkpLI~~~i~~a~~s~i~~IiVsTd~~~i~~~~~~~-------~~~~~~~   67 (255)
T d1vica_           2 FTVIIPARFASSRL-------PGKPLADIKGKPMIQHVFEKALQSGASRVIIATDNENVADVAKSF-------GAEVCMT   67 (255)
T ss_dssp             CEEEEECCCCCSSS-------TTGGGCEETTEEHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-------TCEEEEC
T ss_pred             EEEEEecCCCCCCC-------CCchhhhhCCcCHHHHHHHHHHHCCCCeEEEEcCCcccchhhhhh-------cccccee
Confidence            56899999999998       349999999999999999999999999999998755332222221       1112222


Q ss_pred             EccCCcChHHHHHHHHhcCC--CCcEEEEcCCc--ccCCChhHHHHHHHhcCceEEEEEeecccCCCccCCCCCCcccCC
Q 012817           83 TVPEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK  158 (456)
Q Consensus        83 ~~~~~~gt~~al~~~~~~l~--~~~~lv~~~D~--i~~~~l~~~l~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~  158 (456)
                      ......++..+...+.....  .+.++.+.||.  +...++..+++.+.......+.........  ..          .
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~d~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~--~~----------~  135 (255)
T d1vica_          68 SVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDA--EE----------L  135 (255)
T ss_dssp             CCSSCCHHHHHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCH--HH----------H
T ss_pred             eeccCCcchhhHHHHHHhhccCCceEEEEecchhhhhhhhhhhhhhhcccccccccceeeeccch--hh----------c
Confidence            22223444444444333332  34577788883  334568888888888777666555443211  00          0


Q ss_pred             CCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcce-eEEecCCccceEEeechHHHHHHH
Q 012817          159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQ-MDIRADLMDAHMYAFNRSVLQEVL  224 (456)
Q Consensus       159 ~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~-~~~~~~~~~~giYi~~~~vl~~~~  224 (456)
                      ..........++++.............+.....   ...... ........+.|+|+|++..|..+.
T Consensus       136 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~  199 (255)
T d1vica_         136 FNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMN---LQDVQKVQLSDAYLRHIGIYAYRAGFIKQYV  199 (255)
T ss_dssp             TCTTSCEEEECTTSBEEEEESSCSSCCHHHHTT---CSCGGGCCCCTTCEEEEEEEEEEHHHHHHHH
T ss_pred             cCccceeeeeccCCcccccccccccccchhhhh---ccchhhcccccchheeeeeecccHHHHhhhh
Confidence            012223345566665544443211111100000   000000 011223447799999999987664

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.14  E-value=5.6e-11  Score=101.85  Aligned_cols=107  Identities=13%  Similarity=0.125  Sum_probs=52.4

Q ss_pred             ccCCCceeCCCCEeCCCcEECCCCEECCCCEECC---CCeEe-eeEECCCC----------EECCCcEEeCeEECCCCEE
Q 012817          341 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGD---KCSVK-RSVIGRHC----------RIGSNVKVVNSVVMNHVTI  406 (456)
Q Consensus       341 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~---~~~i~-~s~Ig~~~----------~ig~~~~i~~s~i~~~~~i  406 (456)
                      .++++++|+|++.|..++.||++|.|+++|.|+.   .+.|. ++.++..+          .++.++.+..+.+...+.|
T Consensus        12 ~I~~~~~I~~~a~I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I   91 (173)
T d1v3wa_          12 RIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKV   91 (173)
T ss_dssp             EECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEE
T ss_pred             EECcCcEECCCCEEeCceEECCCCEECCCccccccccccccccccccccccccccccCCCcccCcceeeeeeeeeeeeec
Confidence            3456677777777766677777777666666632   11222 12222222          2233333333333444555


Q ss_pred             CCCcEEc-CeEECCCCEECCCcEec-CeEECCCCEECCCcEEc
Q 012817          407 GDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK  447 (456)
Q Consensus       407 g~~~~i~-~~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~~  447 (456)
                      |++|+|+ +|+|+++++||++++|. +++|.+++.|++++.+.
T Consensus        92 g~~~~ig~~~~i~~gv~Ig~~~vIgagsvV~~~~~i~~~~iv~  134 (173)
T d1v3wa_          92 GNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVL  134 (173)
T ss_dssp             CSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEE
T ss_pred             CCcccccceeeecCCEEEcceeEEcCCcEEeCCeEeCCCCEEc
Confidence            5555554 55555555555444442 34444444444444443

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.12  E-value=2e-10  Score=100.22  Aligned_cols=104  Identities=16%  Similarity=0.208  Sum_probs=68.4

Q ss_pred             ccCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEEc-CeEECC
Q 012817          341 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICS  419 (456)
Q Consensus       341 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i~-~~ii~~  419 (456)
                      ++.+++.|++++.|++++.|++++.||++|.|++++.|.++.||++|.|.. +.+..+.+++++.||+++.+. ++.++.
T Consensus        10 ~I~~~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~~~~~i~~~~IG~~~~I~~-~~i~~~~~g~~~~Ig~~~~i~~~~~i~~   88 (196)
T d1g97a1          10 YIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVITN-SMIEESSVADGVIVGPYAHIRPNSSLGA   88 (196)
T ss_dssp             EECTTCEECTTCEECTTCEEESSCEECTTCEECTTCEEESCEECTTCEECS-CEEESCEECTTCEECSSCEECSSCEECT
T ss_pred             EECCCcEECCCCEECCCCEECCCcEECCCceEcCceEeeeeecccCccccc-cceeeccccCcceeecceeccccccccc
Confidence            455666777777777777777777777777777777777777777777754 345566667777777777774 666666


Q ss_pred             CCEECCCcEecCeEECCCCEECCCcE
Q 012817          420 NAQLQERVALKDCQVGQGYVVSAGCE  445 (456)
Q Consensus       420 ~~~I~~~~~i~~~~i~~~~~v~~~~~  445 (456)
                      ++.++..+.+....++..+.++....
T Consensus        89 ~~~i~~~~~~~~~~~~~~~~~~~~~~  114 (196)
T d1g97a1          89 QVHIGNFVEVKGSSIGENTKAGHLTY  114 (196)
T ss_dssp             TCEEEEEEEEESCEECTTCEEEEEEE
T ss_pred             ceeecccccceeeecCcceEecceEE
Confidence            66666555554444444444444333

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=99.12  E-value=3.3e-10  Score=100.47  Aligned_cols=86  Identities=20%  Similarity=0.344  Sum_probs=46.4

Q ss_pred             ECCCCEECCCCEECCCCeEee-eEECCCCEECCCcEEeC---------eEECCCCEECCCcEE-cCeEECCCCEECCCcE
Q 012817          360 VGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVN---------SVVMNHVTIGDGCSI-QGSVICSNAQLQERVA  428 (456)
Q Consensus       360 i~~~~~i~~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~~---------s~i~~~~~ig~~~~i-~~~ii~~~~~I~~~~~  428 (456)
                      +--+++||++|.|..+++|+. +.||++|.|+.++.|+.         .+|.++|.||.+|.| ++++|+++++|++|++
T Consensus       128 VNigA~ig~~~midt~a~vgs~aqIG~~vhis~g~~igGvlep~~~~p~iIed~~~IGa~s~v~egv~Vg~~avi~~gv~  207 (274)
T d3tdta_         128 VNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVY  207 (274)
T ss_dssp             ECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCSBTTBCSSCCEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred             eccccEEcCCcEEcccceecceeEECCCeEECCCcEEEeccccCCCCCcEEecCcEeccCceEecCEEecCceEeccceE
Confidence            333444444444444444443 35555555555555542         246666666666666 3666666666666666


Q ss_pred             ecCe--------------EECCCCEECCCcE
Q 012817          429 LKDC--------------QVGQGYVVSAGCE  445 (456)
Q Consensus       429 i~~~--------------~i~~~~~v~~~~~  445 (456)
                      |..+              .|.++++|-+|+.
T Consensus       208 i~~~t~i~d~~~g~~~~g~vP~~svvv~gs~  238 (274)
T d3tdta_         208 LGQSTRIYDRETGEIHYGRVPAGSVVVSGNL  238 (274)
T ss_dssp             ECTTCCEEETTTCCEESSEECTTEEEEEEEE
T ss_pred             EeccccceeccCCcEeccccCCCCEEecCce
Confidence            6443              4566666655543

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.12  E-value=8.6e-11  Score=96.23  Aligned_cols=99  Identities=16%  Similarity=0.276  Sum_probs=73.3

Q ss_pred             ceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEE-------------------CCCCEECCCcEEeCeEECCCCEE
Q 012817          346 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVI-------------------GRHCRIGSNVKVVNSVVMNHVTI  406 (456)
Q Consensus       346 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~I-------------------g~~~~ig~~~~i~~s~i~~~~~i  406 (456)
                      ++|++++.|. ++.+ .++.||++|.|++++.|+++++                   +.++.||++|+|.+|+|+++|+|
T Consensus        15 s~Ig~g~~I~-~~~i-~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~~~iIg~~~~I   92 (135)
T d1yp2a1          15 SVIGEGCVIK-NCKI-HHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARI   92 (135)
T ss_dssp             EEECTTCEEE-EEEE-ESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEE
T ss_pred             CEECCCCEEe-CCEE-eccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEeccceecCCCEE
Confidence            4455555553 2233 3566666666666666665544                   44589999999999999999999


Q ss_pred             CCCcEEc-CeEECCCCEECCCcEec-C-eEECCCCEECCCcEE
Q 012817          407 GDGCSIQ-GSVICSNAQLQERVALK-D-CQVGQGYVVSAGCEY  446 (456)
Q Consensus       407 g~~~~i~-~~ii~~~~~I~~~~~i~-~-~~i~~~~~v~~~~~~  446 (456)
                      |+++.+. ++.+.+.+.++.++++. + ++|+++++|++|+.+
T Consensus        93 G~g~~i~~~~~~~~~~~~~~~~~i~~g~vvIg~~~~I~~g~vI  135 (135)
T d1yp2a1          93 GDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII  135 (135)
T ss_dssp             CTTCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTCBC
T ss_pred             CCCcEECCCcccccceeeCCCEEECCCeEEECCCCEECcCcCC
Confidence            9999997 67777777888887775 3 678999999998753

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=99.06  E-value=5.6e-10  Score=98.98  Aligned_cols=95  Identities=18%  Similarity=0.243  Sum_probs=56.8

Q ss_pred             eCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEe-CeEECCCCEECCCcEEcC---------eEE
Q 012817          348 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQG---------SVI  417 (456)
Q Consensus       348 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~~---------~ii  417 (456)
                      +-|++.+..++.|++++++.+ ++|.-++     .||++|+|..+++|+ .|.|+++|+|+.++.|++         ++|
T Consensus       105 vvPga~VR~GayI~~~vVlmp-s~VNigA-----~ig~~~midt~a~vgs~aqIG~~vhis~g~~igGvlep~~~~p~iI  178 (274)
T d3tdta_         105 VVPPATVRQGAFIARNTVLMP-SYVNIGA-----YVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTII  178 (274)
T ss_dssp             ECTTCEEBTTCEECTTCEECS-EEECTTC-----EECTTCEECTTEEECTTCEECTTCEECTTCEECCSBTTBCSSCCEE
T ss_pred             eCCCceeccCcEECCCcEEee-eEecccc-----EEcCCcEEcccceecceeEECCCeEECCCcEEEeccccCCCCCcEE
Confidence            334444444444444444332 3444333     556666666666666 335666666666666653         567


Q ss_pred             CCCCEECCCcEe-cCeEECCCCEECCCcEEcC
Q 012817          418 CSNAQLQERVAL-KDCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       418 ~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~~  448 (456)
                      +++|.||+++.| .++.|+++++|++|+.+..
T Consensus       179 ed~~~IGa~s~v~egv~Vg~~avi~~gv~i~~  210 (274)
T d3tdta_         179 EDNCFIGARSEVVEGVIVEEGSVISMGVYLGQ  210 (274)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             ecCcEeccCceEecCEEecCceEeccceEEec
Confidence            778888877744 5777777777777777655

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=3.8e-10  Score=98.89  Aligned_cols=51  Identities=22%  Similarity=0.350  Sum_probs=35.9

Q ss_pred             eEECCCCEECCCcEEc--------CeEECCCCEECCCcEe-cCeEECCCCEECCCcEEcC
Q 012817          398 SVVMNHVTIGDGCSIQ--------GSVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       398 s~i~~~~~ig~~~~i~--------~~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~~  448 (456)
                      +.+++++.++.++...        .++|+++|.||.++.| .++.||++++|++++.+..
T Consensus       119 ~~~~~~~~i~~~~~~~~~~~~~~~~~~Ig~~v~iG~~~~I~~~v~IG~~s~IgagsvV~k  178 (201)
T d2oi6a1         119 AEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTR  178 (201)
T ss_dssp             EEECTTCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEECS
T ss_pred             cCcCccccccCceeEeecccccccccEeCCcEEEeEeeeEcCCcEECCCCEECCCCEEee
Confidence            3444455555444332        3678888888888866 5899999999999988754

>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.02  E-value=3.8e-10  Score=100.46  Aligned_cols=121  Identities=17%  Similarity=0.140  Sum_probs=83.2

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccceEE
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~~   81 (456)
                      --|||+|+|.++|+       ..|+|++++|+|||+|+|+.+.+++ +++|+|.+..+.    +.+.....     +..+
T Consensus         5 ~iaiIpar~~S~R~-------p~K~l~~i~gkpLi~~~i~~~~~s~~~~~Iiv~td~~~----i~~i~~~~-----~~~~   68 (225)
T d1eyra_           5 NIAVILARQNSKGL-------PLKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDGGL----IAEEAKNF-----GVEV   68 (225)
T ss_dssp             EEEEEECCSCCSSS-------TTGGGCEETTEEHHHHHHHHHHHHTCCSEEEEEESCHH----HHHHHHHT-----TCEE
T ss_pred             EEEEEccCCCCcCC-------CCccccccCCeEHHHHHHHHHHHcCCCceEEEeeccch----hhhhhhhh-----ccee
Confidence            34799999999998       3599999999999999999999987 688888776443    22222221     1222


Q ss_pred             EEcc-----CCcChHHHHHHHHhcCC--CCcEEEEcCC--cccCCChhHHHHHHHhcCceEEEEEee
Q 012817           82 ATVP-----EDVGTAGALRAIAHHLT--AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICS  139 (456)
Q Consensus        82 ~~~~-----~~~gt~~al~~~~~~l~--~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~~~~~  139 (456)
                      ....     ...++.+.++.+.+.+.  .+.++.+.||  ++...++.++++.+.+.+.+..+.+..
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~  135 (225)
T d1eyra_          69 VLRPAELASDTASSISGVIHALETIGSNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACP  135 (225)
T ss_dssp             EECCHHHHSTTCCHHHHHHHHHHHHTCCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEE
T ss_pred             eeeccccccccccchhhccccccccccccceEEEeeccccccccccccccceeeccccccccceeec
Confidence            2211     12355667777766543  3568889999  455567999999888877765444443

>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=2.8e-09  Score=94.99  Aligned_cols=123  Identities=14%  Similarity=0.117  Sum_probs=87.6

Q ss_pred             CCceEEEEecCCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCC-CCEEEEEecCchhhHHHHhhhhhhccCccce
Q 012817            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (456)
Q Consensus         1 m~~~aiIlagG~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~g-i~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i   79 (456)
                      |++-|||+|+|.++||       ..|+|++++|+|||+|+++++.+++ +++|+|.+..+...+....+         ++
T Consensus         2 ~ki~aiIpaR~~S~Rl-------p~K~l~~i~gkpLi~~~i~~~~ks~~id~Iivstd~~~i~~~~~~~---------~~   65 (228)
T d1qwja_           2 PHLAALVLARGGSKGI-------PLKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHDEIENVAKQF---------GA   65 (228)
T ss_dssp             CCEEEEEECCSCCSSS-------SCTTTSEETTEEHHHHHHHHHHHHTCCSEEEEEESCHHHHHHHHHT---------TC
T ss_pred             CCEEEEeccCCCCCCC-------CCcchhhhCCeeHHHHHHHHHHhcCCcceEEEecchhhhhhhhhhc---------Cc
Confidence            6788999999999999       3599999999999999999998876 68888887644322222221         13


Q ss_pred             EEEEcc-----CCcChHHHHHHHHhcCC-CCcEEEEcCC--cccCCChhHHHHHHHhcCceEEEEEee
Q 012817           80 EVATVP-----EDVGTAGALRAIAHHLT-AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICS  139 (456)
Q Consensus        80 ~~~~~~-----~~~gt~~al~~~~~~l~-~~~~lv~~~D--~i~~~~l~~~l~~~~~~~a~~t~~~~~  139 (456)
                      .+....     ......+.+..+.+... .+.++++.+|  ++...+++++++.+.+.+.+..+.+..
T Consensus        66 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~iv~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~  133 (228)
T d1qwja_          66 QVHRRSSETSKDSSTSLDAIVEFLNYHNEVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVR  133 (228)
T ss_dssp             EEEECCGGGSSTTCCHHHHHHHHHTTCTTCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEE
T ss_pred             cccccccccccccchhhhhhhhccccccccceeeeecccccccCchhhhhhhhhhhccCccccccccc
Confidence            333221     12456678887776654 3557777888  555567999999998888876555443

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=98.93  E-value=2.3e-10  Score=100.42  Aligned_cols=103  Identities=20%  Similarity=0.312  Sum_probs=53.1

Q ss_pred             ceeCCCCEeCCCcEECCCCEEC-------CCCEECCCCeEee-eEECCCCEECCCcEEe---CeEECCCCEEC-------
Q 012817          346 NIIHPSAELGSKTTVGPHCMLG-------EGSQMGDKCSVKR-SVIGRHCRIGSNVKVV---NSVVMNHVTIG-------  407 (456)
Q Consensus       346 ~~i~~~~~i~~~~~i~~~~~i~-------~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~---~s~i~~~~~ig-------  407 (456)
                      ++++|.+.+++++.||++++|+       +.+.++.++.|.. ..||++|.|+++|.|.   ...+++++.+.       
T Consensus        18 ~~I~~~v~i~~nV~IG~~~~I~~~~~~~~~~~~i~~~~~I~~~v~IG~~~~Ig~gv~I~~~~~~~i~d~~~~~~~~~~~~   97 (203)
T d1mr7a_          18 QFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNG   97 (203)
T ss_dssp             EEHHHHHTTSTTEEECTTCEEECSSSCCGGGGEESCCGGGCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTT
T ss_pred             EEECCCeEECCCEEECCCcEEcCCcCcccCceEEeeeCEECCccEECCCeEECCCCcEeeecCcEeccCceEeeeeeccc
Confidence            3344444444444444444443       2344444444442 5677777777777663   12222222221       


Q ss_pred             --------CCcEE-cCeEECCCCEECCCcEe-cCeEECCCCEECCCcEEcC
Q 012817          408 --------DGCSI-QGSVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKG  448 (456)
Q Consensus       408 --------~~~~i-~~~ii~~~~~I~~~~~i-~~~~i~~~~~v~~~~~~~~  448 (456)
                              ..+.+ +.++||++|.||.+++| +++.||++++|++|+.+..
T Consensus        98 ~~~~~~~~~~~~i~g~v~IGd~v~IG~~~~I~~gv~IG~~~~IgagSvV~k  148 (203)
T d1mr7a_          98 WEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVK  148 (203)
T ss_dssp             GGGGCCCGGGSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             ccCcccccccccCccCeEECCEEEECCceeEEeEEEEcCCCEEecCeEEee
Confidence                    11112 24667777777777655 3667777777777766544

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=2.1e-09  Score=92.16  Aligned_cols=90  Identities=12%  Similarity=0.069  Sum_probs=55.6

Q ss_pred             cCCCceeCCCCEeCCCcEECC--CCEECCCCEECCCCeEee-eEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-CeE
Q 012817          342 SAQNNIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSV  416 (456)
Q Consensus       342 ~~~~~~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~~i  416 (456)
                      ++.+..|++.+.|+.++.|.+  .+.||++|.|+++|.|.. +.+++.+....++.+. ..+|+++|.||.+|.|. ++.
T Consensus        69 ~G~ni~IG~~~~I~~~~~I~d~~~I~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~iG~~~~I~~Gv~  148 (182)
T d1ocxa_          69 YGYNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVT  148 (182)
T ss_dssp             SSTTEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTTCE
T ss_pred             eccceeECCccEECCCcEEecCCeEEECCCeEECcCceEeecccccceeeeeccceEcceeEECceEeeCceeeccCcEE
Confidence            345666777777777777633  446777777777777764 4556555556665555 34466666666666654 555


Q ss_pred             ECCCCEECCCcEecC
Q 012817          417 ICSNAQLQERVALKD  431 (456)
Q Consensus       417 i~~~~~I~~~~~i~~  431 (456)
                      ||++|+||+|++|..
T Consensus       149 IG~~~vIgagsvV~k  163 (182)
T d1ocxa_         149 IGDNVVVASGAVVTK  163 (182)
T ss_dssp             ECTTCEECTTCEECS
T ss_pred             ECCCCEECCCCEEcc
Confidence            666666665555543

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=1.9e-09  Score=94.26  Aligned_cols=104  Identities=20%  Similarity=0.326  Sum_probs=63.5

Q ss_pred             cCCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeEECCCCEECCCcEE---------
Q 012817          342 SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI---------  412 (456)
Q Consensus       342 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~i~~~~~ig~~~~i---------  412 (456)
                      +++...|++.+.|++++.|++++.||++|.|+++|.|.++.++.++.+...+...++.++.++.++.++.+         
T Consensus        11 i~~~v~IG~~v~Ig~~vvI~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~   90 (201)
T d2oi6a1          11 LRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELLEG   90 (201)
T ss_dssp             EEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTT
T ss_pred             ECceEEECCCCEECCCCEECCceEECCCcEECCCEEEeeeccCCceeeeeeecccccccccccccCcccccccceeeeee
Confidence            34556666666677777777777777777777777776666666666666555555555555555554444         


Q ss_pred             ---------cCeEECCCCEECCCcEecCeEECCCCEECCCcE
Q 012817          413 ---------QGSVICSNAQLQERVALKDCQVGQGYVVSAGCE  445 (456)
Q Consensus       413 ---------~~~ii~~~~~I~~~~~i~~~~i~~~~~v~~~~~  445 (456)
                               +.+.+++++.+++.+.+.++.++.++.+++++.
T Consensus        91 ~~i~~~~~~~~~~ig~~~~i~~~~~~~~~~~~~~~~i~~~~~  132 (201)
T d2oi6a1          91 AHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTI  132 (201)
T ss_dssp             CEEEEEEEEEEEEECTTCEEEEEEEEEEEEECTTCEECTTCE
T ss_pred             eeecceeeeeeeeeCCCeEEceeeeecccCcCccccccCcee
Confidence                     234555666665555555555666665555543

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=4.9e-09  Score=91.13  Aligned_cols=87  Identities=15%  Similarity=0.089  Sum_probs=39.1

Q ss_pred             CCceeCCCCEeCCCcEE--CCCCEECCCCEECCCCeEee-eEECCCCEECCCcEEe-CeEECCCCEECCCcEEc-CeEEC
Q 012817          344 QNNIIHPSAELGSKTTV--GPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVIC  418 (456)
Q Consensus       344 ~~~~i~~~~~i~~~~~i--~~~~~i~~~~~I~~~~~i~~-s~Ig~~~~ig~~~~i~-~s~i~~~~~ig~~~~i~-~~ii~  418 (456)
                      .+..|++.+.|+.++.|  +..+.||++|.|++++.|.. +...+......+..+. ...|+++|.||.+|.|. ++.||
T Consensus        73 ~nv~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~Gv~IG  152 (200)
T d1krra_          73 SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIG  152 (200)
T ss_dssp             TTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTTCEEC
T ss_pred             CccEECCccEECceEEEecCCCcEeCCCccccceeEEecccccceecccccceeecceEEEccCcccceeeecccccccC
Confidence            33444444444444444  23344555555555555442 2333333333333333 33445555555555543 45555


Q ss_pred             CCCEECCCcEec
Q 012817          419 SNAQLQERVALK  430 (456)
Q Consensus       419 ~~~~I~~~~~i~  430 (456)
                      ++|.|+++++|.
T Consensus       153 ~~~vIgagSvV~  164 (200)
T d1krra_         153 DNSVIGAGSIVT  164 (200)
T ss_dssp             TTCEECTTCEEC
T ss_pred             CCcEEeCCCEEe
Confidence            555555555444

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=98.82  E-value=9.1e-10  Score=96.50  Aligned_cols=23  Identities=9%  Similarity=0.205  Sum_probs=10.7

Q ss_pred             CCcEECCCCEECCCCEECCCCeE
Q 012817          356 SKTTVGPHCMLGEGSQMGDKCSV  378 (456)
Q Consensus       356 ~~~~i~~~~~i~~~~~I~~~~~i  378 (456)
                      ..+.+++++.||++|.|+++|.|
T Consensus        53 ~~~~I~~~v~IG~~~~Ig~gv~I   75 (203)
T d1mr7a_          53 HYPILNDKLKIGKFCSIGPGVTI   75 (203)
T ss_dssp             CCGGGCCCEEECSSCEECTTCEE
T ss_pred             eeCEECCccEECCCeEECCCCcE
Confidence            33333444445555555555544

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=98.67  E-value=6e-08  Score=86.59  Aligned_cols=90  Identities=21%  Similarity=0.248  Sum_probs=50.6

Q ss_pred             CceeCCCCEeCCCcEECC--CCEECCCCEECCCCeEeeeEECCCCEECCCcEE---eCeEECCCCEECCCcEE-cCeEEC
Q 012817          345 NNIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKV---VNSVVMNHVTIGDGCSI-QGSVIC  418 (456)
Q Consensus       345 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i---~~s~i~~~~~ig~~~~i-~~~ii~  418 (456)
                      +..|+|.+.||+++.|..  +++|++++.||+++     .|..++.++.....   +..+|+++|.||.++.| ++..||
T Consensus       137 g~~I~~~~~Ig~g~~i~h~~givig~~~~ig~~~-----~i~~~v~~~~~~~~~~~~~~~Ig~~v~IGaga~Ilg~v~IG  211 (241)
T d1ssqa_         137 DVDIHPAAKIGHGIMFDHATGIVVGETSVIENDV-----SILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVG  211 (241)
T ss_dssp             SCEECTTCEECSSCEESSCTTCEECTTCEECTTC-----EECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEEC
T ss_pred             eeccccCCEEccCcccCccceEEEeccceecCCe-----eecccccccccccCCCCCCCccCCCeEECCCCEEcCCcEEC
Confidence            455566666666665532  45555555555444     34444444332211   13467777777777766 477777


Q ss_pred             CCCEECCCcEecCeEECCCCEE
Q 012817          419 SNAQLQERVALKDCQVGQGYVV  440 (456)
Q Consensus       419 ~~~~I~~~~~i~~~~i~~~~~v  440 (456)
                      ++++||+|+++.+. |.+++++
T Consensus       212 ~~a~IgAgsvV~kd-Vp~~~vv  232 (241)
T d1ssqa_         212 KYAKIGANSVVLNP-VPEYATA  232 (241)
T ss_dssp             TTCEECTTCEECSC-BCTTCEE
T ss_pred             CCCEECCCCEECCC-CCCCCEE
Confidence            77777777766554 3444443

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=98.66  E-value=3.8e-08  Score=87.90  Aligned_cols=32  Identities=13%  Similarity=0.132  Sum_probs=15.6

Q ss_pred             eEECCCCEECCCcE-ecCeEECCCCEECCCcEE
Q 012817          415 SVICSNAQLQERVA-LKDCQVGQGYVVSAGCEY  446 (456)
Q Consensus       415 ~ii~~~~~I~~~~~-i~~~~i~~~~~v~~~~~~  446 (456)
                      .+||++|.||+|++ +.+..||++++||+|+.+
T Consensus       190 ~~Ig~~v~IGaga~Ilg~v~IG~~a~IgAgsvV  222 (241)
T d1ssqa_         190 PKVREGVMIGAGAKILGNIEVGKYAKIGANSVV  222 (241)
T ss_dssp             CEECTTCEECTTCEEESSCEECTTCEECTTCEE
T ss_pred             CccCCCeEECCCCEEcCCcEECCCCEECCCCEE
Confidence            44555555555552 234455555555555444

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.59  E-value=1.9e-08  Score=87.97  Aligned_cols=32  Identities=13%  Similarity=0.272  Sum_probs=14.5

Q ss_pred             eEECCCCEECCCcEec-CeEECCCCEECCCcEE
Q 012817          415 SVICSNAQLQERVALK-DCQVGQGYVVSAGCEY  446 (456)
Q Consensus       415 ~ii~~~~~I~~~~~i~-~~~i~~~~~v~~~~~~  446 (456)
                      ++|+++|.||.++.|. ++.||++++|++++.+
T Consensus       109 v~Igd~v~IG~~s~I~~gv~IG~~~vIgagSvV  141 (208)
T d1xata_         109 TLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALV  141 (208)
T ss_dssp             EEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             EEEcCCeEECccccccCCeEeCCCCEEeCceEE
Confidence            4444444444444332 3444444444444444

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=98.57  E-value=5.3e-07  Score=84.31  Aligned_cols=62  Identities=23%  Similarity=0.396  Sum_probs=44.6

Q ss_pred             CCccc-CCCceeCCCCEeCCCcEECCCCEECCCCEECCCCeEeeeEECCCCEECCCcEEeCeE
Q 012817          338 GYNFS-AQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSV  399 (456)
Q Consensus       338 ~~~~~-~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~~s~Ig~~~~ig~~~~i~~s~  399 (456)
                      +..|+ .+++.+.+++.|+++++|++++.|+.++.|++++.|.++.|.+++.|++++.|.++.
T Consensus        55 g~~wv~~~nA~V~~~a~I~~na~i~~~~~I~~~a~Ig~n~~ig~a~I~~~a~I~~n~~i~~~~  117 (320)
T d2f9ca1          55 GDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSS  117 (320)
T ss_dssp             SSCEECSTTCEECSSCEECTTCEECSSCEECSSCEECSSCEESSCEECSSEEECSSCEEESCE
T ss_pred             CCCEEECCCcEECCCCEECCCCEECCCcEECCCcEECCcEEECCcEEEcCcEEeeeeeecCcc
Confidence            33444 356777888888888888888888888888888777777777777777777766443

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.51  E-value=8.7e-08  Score=83.71  Aligned_cols=21  Identities=14%  Similarity=0.221  Sum_probs=10.3

Q ss_pred             CEECCCcEEc-CeEECCCCEEC
Q 012817          404 VTIGDGCSIQ-GSVICSNAQLQ  424 (456)
Q Consensus       404 ~~ig~~~~i~-~~ii~~~~~I~  424 (456)
                      ++||++|+|+ +|+|.++++||
T Consensus       109 v~Igd~v~IG~~s~I~~gv~IG  130 (208)
T d1xata_         109 TLIGHEVWIGTEAMFMPGVRVG  130 (208)
T ss_dssp             EEECTTCEECTTCEECTTCEEC
T ss_pred             EEEcCCeEECccccccCCeEeC
Confidence            4455555543 44444444444

>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.37  E-value=9.1e-06  Score=76.70  Aligned_cols=194  Identities=11%  Similarity=0.136  Sum_probs=113.6

Q ss_pred             CceEEEEecCCCCCCcCCCCCCCcccccccC-CcchHHHHHHHHHH----CCC-CEEEEEecCchhhHHHHhhhhhhccC
Q 012817            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLEL----SNI-KDLIVVVEGADAALRVGGWISAAYVD   75 (456)
Q Consensus         2 ~~~aiIlagG~g~rl~pl~~~~~pK~llpi~-gkpli~~~l~~l~~----~gi-~~v~iv~~~~~~~~~i~~~~~~~~~~   75 (456)
                      ++-+|+||||.|+||    +...||.++|++ |+++++..++++..    .|. -.++|.++... .+...+++.++...
T Consensus        74 kvavv~LaGG~GTRL----G~~~pK~~~~v~~~~t~ldl~~~~i~~l~~~~~~~iP~~iMtS~~T-~~~t~~~l~~~~~f  148 (378)
T d2icya2          74 KLVVLKLNGGLGTTM----GCTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNSFNT-HDDTHKIVEKYTNS  148 (378)
T ss_dssp             TEEEEEEECCBSGGG----TCCSBGGGSEEETTEEHHHHHHHHHHHHHHHHSCCCCEEEEECTTT-HHHHHHHHGGGTTS
T ss_pred             CEEEEEecCCccccc----CCCCCceeeEeCCCCCHHHHHHHHHHHHHHHhCCCCCEEEECCCCC-hHHHHHHHHHhccC
Confidence            355799999999999    888999999996 78999999999864    343 24666665432 34566666654333


Q ss_pred             ccceEEEEcc-------------------C-----CcChHHHHHHH-----HhcC---CCCcEEEEcCCcccCCChhHHH
Q 012817           76 RLHVEVATVP-------------------E-----DVGTAGALRAI-----AHHL---TAKDVLVVSGDLVSDVPPGAVT  123 (456)
Q Consensus        76 ~~~i~~~~~~-------------------~-----~~gt~~al~~~-----~~~l---~~~~~lv~~~D~i~~~~l~~~l  123 (456)
                      ..++.++.|.                   .     +.|.++.....     ++.+   .-+++.+...|.+....--.++
T Consensus       149 g~~i~~f~Q~~~P~~~~~~~~~~~~~~~~~~~~~~P~GhGdi~~aL~~sG~Ld~l~~~Gieyi~v~~vDNl~a~~Dp~~l  228 (378)
T d2icya2         149 NVDIHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTIL  228 (378)
T ss_dssp             SSCEEEEECCCEECEETTTTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCHHHH
T ss_pred             CCceEEEEecccccccCCcccccccccCCCcceeecCCChhhhHHHHhcChHHHHHhcCCEEEEEEccCCcccccchHHH
Confidence            3344443221                   0     23555444332     2222   2467999999976554445688


Q ss_pred             HHHHhcCceEEEEEeecccCCCccCCCCCCcccCCCCCcccEEEecCCCcEEEEeecccccccccccchHHHhhcceeEE
Q 012817          124 AAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDI  203 (456)
Q Consensus       124 ~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~d~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~  203 (456)
                      -.|.+.++++++-+.+..  .+.             ...-.++..|.. -.++.+.+.++..     . .......    
T Consensus       229 G~~~~~~~~~~~kvv~Kt--~~d-------------ek~G~l~~~dg~-~~vvEyse~p~e~-----~-~~~~~~~----  282 (378)
T d2icya2         229 KHLIQNKNEYCMEVTPKT--LAD-------------VKGGTLISYEGK-VQLLEIAQVPDEH-----V-NEFKSIE----  282 (378)
T ss_dssp             HHHHHHTCSEEEEEEECC--TTC-------------CSSCEEEEETTE-EEEECGGGSCGGG-----H-HHHHSSS----
T ss_pred             HHHHhcCCcceeEEEecC--CCC-------------CceeEEEEECCc-eeeeehhcCChhH-----H-hhhcCCc----
Confidence            889999999877665432  211             111123344422 2333443322110     0 0011111    


Q ss_pred             ecCCccceEEeechHHHHHHHhc
Q 012817          204 RADLMDAHMYAFNRSVLQEVLDQ  226 (456)
Q Consensus       204 ~~~~~~~giYi~~~~vl~~~~~~  226 (456)
                      ...+.|++.++|+-+.++++++.
T Consensus       283 ~~~~~N~nn~~~~l~~l~~~~~~  305 (378)
T d2icya2         283 KFKIFNTNNLWVNLKAIKKLVEA  305 (378)
T ss_dssp             SCCEEEEEEEEEEHHHHHHHHHT
T ss_pred             CcceeeeeeeeeeHHHHHHHHhh
Confidence            11235899999999999888753

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=98.35  E-value=2.2e-06  Score=80.01  Aligned_cols=59  Identities=12%  Similarity=0.169  Sum_probs=25.0

Q ss_pred             CceeCCCCEeCCCcEECCCCEECCCCEECCCCeEe-eeEECCCCEECCCcEEeCeEECCCC
Q 012817          345 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVVNSVVMNHV  404 (456)
Q Consensus       345 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~i~-~s~Ig~~~~ig~~~~i~~s~i~~~~  404 (456)
                      ++.|.+.+.|++.+.|++++.|+++|.|+ ++.|. ++.|+++|.|++++.++++.+..++
T Consensus        69 ~a~I~~na~i~~~~~I~~~a~Ig~n~~ig-~a~I~~~a~I~~n~~i~~~~~i~~~~i~g~~  128 (320)
T d2f9ca1          69 GTEITGNARITQPCTLYNNVRIGDNVWID-RADISDGARISDNVTIQSSSVREECAIYGDA  128 (320)
T ss_dssp             SCEECTTCEECSSCEECSSCEECSSCEES-SCEECSSEEECSSCEEESCEECSSEEECSSC
T ss_pred             CCEECCCCEECCCcEECCCcEECCcEEEC-CcEEEcCcEEeeeeeecCccEEeeeEEECCe
Confidence            34444444444444444444444444443 23333 2444444444444444433333333

>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-N-acetylglucosamine pyrophosphorylase
species: Human (Homo sapiens), AGX1 [TaxId: 9606]

Probab=97.16  E-value=0.0073  Score=58.31  Aligned_cols=132  Identities=16%  Similarity=0.193  Sum_probs=79.7

Q ss_pred             ceEEEEecCCCCCCcCCCCCCCccccccc---CCcchHHHHHHHHHHC----------CC-CEEEEEecCchhhHHHHhh
Q 012817            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPV---ANRPVLSYVLEQLELS----------NI-KDLIVVVEGADAALRVGGW   68 (456)
Q Consensus         3 ~~aiIlagG~g~rl~pl~~~~~pK~llpi---~gkpli~~~l~~l~~~----------gi-~~v~iv~~~~~~~~~i~~~   68 (456)
                      +-+|+||||.|+||    +...||.++|+   .|+++++..++++...          +. --++|.++... .+.++++
T Consensus       103 vavvllaGG~GTRL----G~~~pK~~~~v~~~~~ksllql~~e~i~~l~~~a~~~~~~~~~iPl~IMtS~~T-~~~t~~~  177 (501)
T d1jv1a_         103 VAVLLLAGGQGTRL----GVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRT-MESTKEF  177 (501)
T ss_dssp             EEEEEECCCCCCTT----SCSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTT-HHHHHHH
T ss_pred             EEEEEECCCccccC----CCCCCceeeeeccCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECChhH-hHHHHHH
Confidence            45799999999999    88899999998   4789999988877542          21 23566666443 3456666


Q ss_pred             hhhh--cc-CccceEEEEcc---------------------CCcChHHHHHHH-----Hhc---CCCCcEEEEcCCcc-c
Q 012817           69 ISAA--YV-DRLHVEVATVP---------------------EDVGTAGALRAI-----AHH---LTAKDVLVVSGDLV-S  115 (456)
Q Consensus        69 ~~~~--~~-~~~~i~~~~~~---------------------~~~gt~~al~~~-----~~~---l~~~~~lv~~~D~i-~  115 (456)
                      +.+.  +. +.-.+.+..|.                     .+.|.++.....     ++.   -.-+++.+..-|.+ .
T Consensus       178 l~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~i~~~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~  257 (501)
T d1jv1a_         178 FTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILV  257 (501)
T ss_dssp             HHHTGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTC
T ss_pred             HHhccccCCCcCceEEEEecCcceECCCCCcccCCCCcccccCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecCCccc
Confidence            6542  21 11122222211                     023444333222     121   12367888888854 3


Q ss_pred             CCChhHHHHHHHhcCceEEEEEee
Q 012817          116 DVPPGAVTAAHRRHDAVVTAMICS  139 (456)
Q Consensus       116 ~~~l~~~l~~~~~~~a~~t~~~~~  139 (456)
                      ...--.++-.+...++++..-+.+
T Consensus       258 ~~~Dp~~lG~~~~~~~~~~~kvv~  281 (501)
T d1jv1a_         258 KVADPRFIGFCIQKGADCGAKVVE  281 (501)
T ss_dssp             CTTCHHHHHHHHHTTCSEEEEEEE
T ss_pred             cccCHHHHHHHHhcccceeEEEEE
Confidence            333345788888899988776554

>d2i5ea1 c.68.1.21 (A:1-208) Hypothetical protein MM2497 {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: MM2497-like
domain: Hypothetical protein MM2497
species: Methanosarcina mazei [TaxId: 2209]

Probab=88.92  E-value=0.33  Score=40.64  Aligned_cols=103  Identities=17%  Similarity=0.191  Sum_probs=61.7

Q ss_pred             ceEEEEec--CCCCCCcCCCCCCCcccccccCCcchHHHHHHHHHHCCCCEEEEEecCchhhHHHHhhhhhhccCccceE
Q 012817            3 FQVVVLAG--GTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (456)
Q Consensus         3 ~~aiIlag--G~g~rl~pl~~~~~pK~llpi~gkpli~~~l~~l~~~gi~~v~iv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (456)
                      |.+||+.-  ..-+||.|.-+   ++.-. -.-+.|+.++++.+.++++..+++++.....    ..+.     ..  ..
T Consensus         1 m~~iiPiK~~~aKTRL~~~L~---~~~r~-~L~~~ml~~tl~~l~~~~~~~v~~vs~~~~~----~~~~-----~~--~~   65 (208)
T d2i5ea1           1 MRAVIPYKKAGAKSRLSPVLS---LQERE-EFVELMLNQVISSLKGAGIEQVDILSPSVYG----LEEM-----TE--AR   65 (208)
T ss_dssp             CEEEEECCCTTTTGGGTTTSC---HHHHH-HHHHHHHHHHHHHHHHTTCSEEEEEESSCTT----CSSC-----CS--SE
T ss_pred             CeEEEecCCCCCccCcCcccC---HHHHH-HHHHHHHHHHHHHHHhCCCcEEEEEcCcHHH----HHHh-----hc--CC
Confidence            67888862  22346644301   11100 0123699999999999999999988864321    1111     11  22


Q ss_pred             EEEccCCcChHHHHHHHHhcCCCCcEEEEcCC--cccCCChhHHH
Q 012817           81 VATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVT  123 (456)
Q Consensus        81 ~~~~~~~~gt~~al~~~~~~l~~~~~lv~~~D--~i~~~~l~~~l  123 (456)
                      +.  ....+..+++..+.+.- .+.++++++|  .+...+|..++
T Consensus        66 ~~--~~~~~L~~al~~a~~~~-~~~vliig~DlP~L~~~~l~~a~  107 (208)
T d2i5ea1          66 VL--LDEKDLNEALNRYLKEA-EEPVLIVMADLPLLSPEHIKEIS  107 (208)
T ss_dssp             EE--ECCSCHHHHHHHHHHHC-CSCEEEECSCCTTCCHHHHHHHT
T ss_pred             cc--cCCCCHHHHHHHHHhcC-CCCEEEecCCcCcCCHHHHHHHH
Confidence            22  23457778888887654 4789999999  56665666654

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.49  E-value=10  Score=32.87  Aligned_cols=103  Identities=10%  Similarity=0.070  Sum_probs=65.1

Q ss_pred             cccCCc--chHHHHHHHHHHCCC----CEEEEEecCc-hh-h-HHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHh
Q 012817           29 LPVANR--PVLSYVLEQLELSNI----KDLIVVVEGA-DA-A-LRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAH   99 (456)
Q Consensus        29 lpi~gk--pli~~~l~~l~~~gi----~~v~iv~~~~-~~-~-~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~   99 (456)
                      +|.-|.  ..|..+|+.+.+.--    .+|+||=+.. +. . +.++++....   ...+.++..+...|.+.+.-.+++
T Consensus        28 Ip~yNe~~~~l~~~l~Si~~qt~~~~~~EIIvVDdgS~d~~~~~~l~~~~~~~---~~~i~vi~~~~n~G~~~a~N~Gi~  104 (328)
T d1xhba2          28 IVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKL---KVPVHVIRMEQRSGLIRARLKGAA  104 (328)
T ss_dssp             EEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSS---SSCEEEEECSSCCCHHHHHHHHHH
T ss_pred             EeccCCcHHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhhHHHHHHHHHHhc---CCCeEEEEecccccchHHHHHHHH
Confidence            555564  368899988865432    2676664321 11 1 1234444332   223666655667899888877788


Q ss_pred             cCCCCcEEEEcCCccc-CCChhHHHHHHHhcCceEE
Q 012817          100 HLTAKDVLVVSGDLVS-DVPPGAVTAAHRRHDAVVT  134 (456)
Q Consensus       100 ~l~~~~~lv~~~D~i~-~~~l~~~l~~~~~~~a~~t  134 (456)
                      ....+.++++.+|.+. +..++.+++.+.+....+.
T Consensus       105 ~a~gd~i~flD~D~~~~p~~l~~l~~~~~~~~~~~v  140 (328)
T d1xhba2         105 VSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVV  140 (328)
T ss_dssp             HCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEE
T ss_pred             hhhcceeeecCcccccChhHHHHHHHHHhcCCCeEE
Confidence            8777889999999544 4558888888777665543

>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Exostosin
domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.25  E-value=0.42  Score=39.94  Aligned_cols=101  Identities=13%  Similarity=0.146  Sum_probs=60.7

Q ss_pred             ccccCCc-chHHHHHHHHHHCCC-CEEEEEecCc--hhhHHHHhhhhhhccCccceEEEEccCCcChHHHHHHHHhcCCC
Q 012817           28 LLPVANR-PVLSYVLEQLELSNI-KDLIVVVEGA--DAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA  103 (456)
Q Consensus        28 llpi~gk-pli~~~l~~l~~~gi-~~v~iv~~~~--~~~~~i~~~~~~~~~~~~~i~~~~~~~~~gt~~al~~~~~~l~~  103 (456)
                      ++|.-++ ..|..+|+.+.+... .+++||.+..  +..+.+.....+    . ...++...+..|.+.+.-.+++....
T Consensus         8 ii~tyn~~~~l~~~l~sl~~q~~~~~~iiV~d~~sd~~~~~i~~~~~~----~-~~~~~~~~~~~g~~~a~n~~~~~a~g   82 (265)
T d1omza_           8 IMQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGP----H-PIPVIFKPQTANKMRNRLQVFPEVET   82 (265)
T ss_dssp             EEEESSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCC----C-SSCEEEEECSSCCGGGGGSCCTTCCS
T ss_pred             EEEcCCCHHHHHHHHHHHHcCCCcCeEEEEECCCCCccHHHHHHHhcc----c-ceEEEEecCCCCchhhhhhhHHhCCc
Confidence            3455555 589999999977654 4555554422  222333332221    1 12222234556777776666777777


Q ss_pred             CcEEEEcCCcccCC-ChhHHHHHHHhcCceE
Q 012817          104 KDVLVVSGDLVSDV-PPGAVTAAHRRHDAVV  133 (456)
Q Consensus       104 ~~~lv~~~D~i~~~-~l~~~l~~~~~~~a~~  133 (456)
                      +.++++.+|.+... .++.+++.+.+....+
T Consensus        83 e~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~  113 (265)
T d1omza_          83 NAVLMVDDDTLISAQDLVFAFSIWQQFPDQI  113 (265)
T ss_dssp             SEEEEECTTEEECHHHHHHHHHHHTTSTTSE
T ss_pred             CEEEEeCcccCCCHHHHHHHHHHHHhCCCcc
Confidence            78999999965554 4888888877765543