Citrus Sinensis ID: 012823

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450------
MTIQSSVERKYRKSPRAPLLPQAQSQNHDNLEAHEAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRLNLDGLLFPYAIPIAFDNRRFFAVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIATKNDRLASWLMISLAVSSSTVAVSSDIYSIFNGVGG
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHEEEEEEEEcccccccccccccccccccccccccccHHHHHHHccccHHcHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHEEHcccHHHHHHHHccccccHccccccccccccEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHEEEEEEEEEEEHcccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
mtiqssverkyrksprapllpqaqsqnhdnleaheagidgasfsgAVFNLSTTIVGAGIMALPATvkelglipGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLsgawlngvhhsgvteewfgqhwwttRFTLLLLTTLFVFlplisfrrvdslRYTSALSVGLAIVFVVITAGVAIVKtidgsismpcllpeiSKQASFWKLFTTFPVLVTAYIChhnihpienelkdptqiKSIVRTSITLCSTVYITTSFFGLllfgdrtlddvlanfdgdlgipysslldDVVRVSYGIHLMLVFPIVFFSLRLnldgllfpyaipiafdnRRFFAVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALrdthgiatknDRLASWLMISLAVSsstvavssDIYSIFNGVGG
mtiqssverkyrksprapllpqaqsQNHDNLEAHEAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPienelkdptQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRLNLDGLLFPYAIPIAFDNRRFFAVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIATKNDRLASWLMISLAVssstvavssdIYSIFNGVGG
MTIQSSVERKYRKSPRAPLLPQAQSQNHDNLEAHEAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWttrftllllttlfvflplISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRLNLDGLLFPYAIPIAFDNRRFFAVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIATKNDRLASWLMIslavssstvavssDIYSIFNGVGG
*************************************IDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRLNLDGLLFPYAIPIAFDNRRFFAVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIATKNDRLASWLMISLAVSSSTVAVSSDIYSIFNG***
**********************************************VFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRLNLDGLLFPYAIPIAFDNRRFFAVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIATKNDRLASWLMISLAVSSSTVAVSSDIYSIFNGVG*
****************APLLPQAQSQNHDNLEAHEAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRLNLDGLLFPYAIPIAFDNRRFFAVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIATKNDRLASWLMISLAVSSSTVAVSSDIYSIFNGVGG
***************************************GASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRLNLDGLLFPYAIPIAFDNRRFFAVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIATKNDRLASWLMISLAVSSSTVAVSSDIYSIFNGV**
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MTIQSSVERKYRKSPRAPLLPQAQSQNHDNLEAHEAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRLNLDGLLFPYAIPIAFDNRRFFAVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIATKNDRLASWLMISLAVSSSTVAVSSDIYSIFNGVGG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query456 2.2.26 [Sep-21-2011]
Q9JM15485 Sodium-coupled neutral am yes no 0.879 0.826 0.263 3e-28
Q9H2H9487 Sodium-coupled neutral am yes no 0.875 0.819 0.260 4e-27
Q5R443487 Sodium-coupled neutral am yes no 0.875 0.819 0.258 1e-26
Q99624504 Sodium-coupled neutral am no no 0.809 0.732 0.268 3e-26
Q28HE5448 Probable sodium-coupled n no no 0.798 0.812 0.262 8e-26
Q5SPB1504 Sodium-coupled neutral am no no 0.809 0.732 0.260 2e-25
Q9DCP2505 Sodium-coupled neutral am no no 0.802 0.724 0.265 5e-25
Q9JHZ9504 Sodium-coupled neutral am no no 0.809 0.732 0.260 6e-25
Q8K2P7485 Sodium-coupled neutral am no no 0.890 0.837 0.257 1e-24
Q3USY0453 Putative sodium-coupled n no no 0.833 0.838 0.258 1e-24
>sp|Q9JM15|S38A1_RAT Sodium-coupled neutral amino acid transporter 1 OS=Rattus norvegicus GN=Slc38a1 PE=1 SV=1 Back     alignment and function desciption
 Score =  126 bits (317), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 118/447 (26%), Positives = 213/447 (47%), Gaps = 46/447 (10%)

Query: 24  QSQNHDNLEAHEAG--IDGASFSG-AVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVL 80
           +S  + +LE  +    I G +  G +VFNLS  I+G+GI+ L   +   G++  LI++  
Sbjct: 51  RSLTNSHLEKRKCDEYIPGTTSLGMSVFNLSNAIMGSGILGLAFALANTGILLFLILLTS 110

Query: 81  VGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIG 140
           V  L+  SI++++  S+ +    Y  +    FG  G+ ++     + N G ++ Y+ I+ 
Sbjct: 111 VTLLSIYSINLLLICSKETGCMVYEKLGEQVFGTTGKLVIFGATSLQNTGAMLSYLFIVK 170

Query: 141 DVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALS 200
           + L  A       S + EE     W+     L+++ T  + LPL   + +  L YTS  S
Sbjct: 171 NELPSAI-----KSLMGEEETFSAWYVDGRVLVVMVTFGIILPLCLLKNLGYLGYTSGFS 225

Query: 201 VGLAIVFVVITAGVAIVKTIDGSISMPCLLPEIS-------------KQASF-WKLFTTF 246
           +   + F+++         I     +PC+  E +             K  +F  K     
Sbjct: 226 LSCMVFFLIV--------VIYKKFQIPCMNGEQNSTVSANVTDACTPKYVTFNSKTVYAL 277

Query: 247 PVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCS--TVYITTSFFGLLLFGDRTLD 304
           P +  A++CH ++ PI +ELKD +Q K  + ++I+  +   +Y  T+ FG L F ++   
Sbjct: 278 PTIAFAFVCHPSVLPIYSELKDRSQKKMQMVSNISFFAMFVMYFLTAIFGYLTFYEKVQS 337

Query: 305 DVLANFD--GDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRLNLDGLLFPYAIPIAF 362
           D+L  +   GD+ I         VR++  + ++L  P++FF++R +    LF  A    F
Sbjct: 338 DLLHKYQSTGDILIL-------TVRLAVIVAVILTVPVLFFTVRSS----LFELAKKTKF 386

Query: 363 DNRRFFAVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIATK 422
              R   VT  L+  I +   F+PS+ D F   G T+A  + FI P+++ L+ T+    K
Sbjct: 387 HLCRHVLVTIILLVIINLLVIFIPSMKDIFGVVGVTSANMLIFILPSSLYLKITNQDGDK 446

Query: 423 N-DRLASWLMISLAVSSSTVAVSSDIY 448
           N  R+ + L ++L V  S +++   IY
Sbjct: 447 NTQRIWAALFLALGVLFSLISIPLVIY 473
Functions as a sodium-dependent amino acid transporter. Mediates the saturable, pH-sensitive and electrogenic cotransport of glutamine and sodium ions with a stoichiometry of 1:1. May also transport small zwitterionic and aliphatic amino acids with a lower affinity. May supply glutamatergic and GABAergic neurons with glutamine which is required for the synthesis of the neurotransmitters glutamate and GABA.
Rattus norvegicus (taxid: 10116)
>sp|Q9H2H9|S38A1_HUMAN Sodium-coupled neutral amino acid transporter 1 OS=Homo sapiens GN=SLC38A1 PE=1 SV=1 Back     alignment and function description
>sp|Q5R443|S38A1_PONAB Sodium-coupled neutral amino acid transporter 1 OS=Pongo abelii GN=SLC38A1 PE=2 SV=1 Back     alignment and function description
>sp|Q99624|S38A3_HUMAN Sodium-coupled neutral amino acid transporter 3 OS=Homo sapiens GN=SLC38A3 PE=2 SV=1 Back     alignment and function description
>sp|Q28HE5|S38A6_XENTR Probable sodium-coupled neutral amino acid transporter 6 OS=Xenopus tropicalis GN=slc38a6 PE=2 SV=1 Back     alignment and function description
>sp|Q5SPB1|S38A2_DANRE Sodium-coupled neutral amino acid transporter 2 OS=Danio rerio GN=slc38a2 PE=3 SV=1 Back     alignment and function description
>sp|Q9DCP2|S38A3_MOUSE Sodium-coupled neutral amino acid transporter 3 OS=Mus musculus GN=Slc38a3 PE=1 SV=1 Back     alignment and function description
>sp|Q9JHZ9|S38A3_RAT Sodium-coupled neutral amino acid transporter 3 OS=Rattus norvegicus GN=Slc38a3 PE=2 SV=1 Back     alignment and function description
>sp|Q8K2P7|S38A1_MOUSE Sodium-coupled neutral amino acid transporter 1 OS=Mus musculus GN=Slc38a1 PE=1 SV=1 Back     alignment and function description
>sp|Q3USY0|S38AB_MOUSE Putative sodium-coupled neutral amino acid transporter 11 OS=Mus musculus GN=Slc38a11 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query456
255537952456 amino acid transporter, putative [Ricinu 0.989 0.989 0.790 0.0
449447087453 PREDICTED: sodium-coupled neutral amino 0.975 0.982 0.775 0.0
225458918449 PREDICTED: sodium-coupled neutral amino 0.982 0.997 0.807 0.0
224067156414 amino acid transporter [Populus trichoca 0.905 0.997 0.808 0.0
147818199468 hypothetical protein VITISV_034136 [Viti 0.982 0.957 0.764 0.0
356554046453 PREDICTED: probable sodium-coupled neutr 0.956 0.962 0.721 0.0
302142154394 unnamed protein product [Vitis vinifera] 0.861 0.997 0.832 1e-178
255586905461 amino acid transporter, putative [Ricinu 0.975 0.965 0.643 1e-165
224127528460 amino acid transporter [Populus trichoca 0.967 0.958 0.639 1e-162
225451866462 PREDICTED: sodium-coupled neutral amino 0.980 0.967 0.623 1e-160
>gi|255537952|ref|XP_002510041.1| amino acid transporter, putative [Ricinus communis] gi|223550742|gb|EEF52228.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/459 (79%), Positives = 408/459 (88%), Gaps = 8/459 (1%)

Query: 1   MTIQS-SVERKYRKSPRAPLLPQAQSQNHDNLEAHEAGIDGASFSGAVFNLSTTIVGAGI 59
           MT+ S S ERK+R+SPR PLLPQ     HD+ E  E G +GASFSGAVFNLSTTIVGAGI
Sbjct: 1   MTVVSLSSERKFRRSPRNPLLPQ----KHDDYEPLEVGFNGASFSGAVFNLSTTIVGAGI 56

Query: 60  MALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRAL 119
           MALPATVK+LGLIPGL+MI+L   LTESS+DMI+RFS+A+KS TYSGVV+DAFGG GR L
Sbjct: 57  MALPATVKQLGLIPGLMMIILGAMLTESSVDMILRFSKAAKSTTYSGVVSDAFGGGGRTL 116

Query: 120 LQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLF 179
           LQ+ I+VNNLGML+VYMIIIGDVL+G W +GV HSGV EEWFG+HWWT+R  LLLLTTL 
Sbjct: 117 LQLGIIVNNLGMLIVYMIIIGDVLAGTWSDGVRHSGVMEEWFGRHWWTSRSFLLLLTTLL 176

Query: 180 VFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASF 239
           VF PLISF+RVDSLRYTSALSVGLAIVFV ITAGV  +K ++G I MP L+PE++ QASF
Sbjct: 177 VFAPLISFKRVDSLRYTSALSVGLAIVFVAITAGVVAIKLMEGGIGMPRLMPELNNQASF 236

Query: 240 WKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFG 299
           WKLFTT P+LVTAYICHHN+HPIENEL+D  Q+KSIVRTS+TLCS+VY+ TS FG+LLFG
Sbjct: 237 WKLFTTVPILVTAYICHHNVHPIENELRDTAQMKSIVRTSLTLCSSVYVATSLFGILLFG 296

Query: 300 DRTLDDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRLNLDGLLFPYAIP 359
           D+TLDDVLANFDGDLGIPYSSLLDDVVR+SYG+HLMLVFPIVFFSLRLNLD LLFPYAIP
Sbjct: 297 DQTLDDVLANFDGDLGIPYSSLLDDVVRISYGVHLMLVFPIVFFSLRLNLDCLLFPYAIP 356

Query: 360 IAFDNRRFFAVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGI 419
           IA+DNRRFF++TAALMGFIFVGANFVP IWDAFQFTGATA VSVGFIFPAAIAL+DTH I
Sbjct: 357 IAYDNRRFFSLTAALMGFIFVGANFVPDIWDAFQFTGATATVSVGFIFPAAIALKDTHCI 416

Query: 420 ATKNDRLASWLMISLAVSSSTVAVSSDIYSIFN---GVG 455
           ATK+DRL SW+MISLAVSSSTVA+ SDIYSIFN   GVG
Sbjct: 417 ATKSDRLKSWVMISLAVSSSTVAICSDIYSIFNFDSGVG 455

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449447087|ref|XP_004141301.1| PREDICTED: sodium-coupled neutral amino acid transporter 1-like [Cucumis sativus] gi|449509262|ref|XP_004163538.1| PREDICTED: sodium-coupled neutral amino acid transporter 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225458918|ref|XP_002285488.1| PREDICTED: sodium-coupled neutral amino acid transporter 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224067156|ref|XP_002302383.1| amino acid transporter [Populus trichocarpa] gi|222844109|gb|EEE81656.1| amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147818199|emb|CAN60404.1| hypothetical protein VITISV_034136 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356554046|ref|XP_003545360.1| PREDICTED: probable sodium-coupled neutral amino acid transporter 6-like [Glycine max] Back     alignment and taxonomy information
>gi|302142154|emb|CBI19357.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255586905|ref|XP_002534057.1| amino acid transporter, putative [Ricinus communis] gi|223525920|gb|EEF28328.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224127528|ref|XP_002329300.1| amino acid transporter [Populus trichocarpa] gi|222870754|gb|EEF07885.1| amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225451866|ref|XP_002282329.1| PREDICTED: sodium-coupled neutral amino acid transporter 4 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query456
TAIR|locus:2102926460 AT3G30390 [Arabidopsis thalian 0.942 0.934 0.565 2.7e-132
TAIR|locus:2166615456 AT5G38820 "AT5G38820" [Arabido 0.942 0.942 0.546 3.6e-128
TAIR|locus:2063068440 AT2G40420 "AT2G40420" [Arabido 0.936 0.970 0.441 4.7e-96
TAIR|locus:2078381435 AT3G56200 [Arabidopsis thalian 0.947 0.993 0.418 2.3e-94
TAIR|locus:2198968489 AT1G80510 [Arabidopsis thalian 0.890 0.830 0.420 4.7e-87
ZFIN|ZDB-GENE-040718-395472 slc38a5b "solute carrier famil 0.782 0.756 0.282 6.8e-26
UNIPROTKB|F8VX04503 SLC38A1 "Sodium-coupled neutra 0.842 0.763 0.254 8.4e-25
UNIPROTKB|F6XT35487 SLC38A1 "Uncharacterized prote 0.826 0.774 0.264 1e-24
UNIPROTKB|I3LB54 1053 SLC38A10 "Uncharacterized prot 0.767 0.332 0.246 1e-24
UNIPROTKB|Q9H2H9487 SLC38A1 "Sodium-coupled neutra 0.809 0.757 0.257 1.9e-24
TAIR|locus:2102926 AT3G30390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1297 (461.6 bits), Expect = 2.7e-132, P = 2.7e-132
 Identities = 246/435 (56%), Positives = 322/435 (74%)

Query:    17 APLLPQAQSQNHDNLEAHEAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLI 76
             APLLP+     H +  AH+   +GASFSGAVFNL+TTI+GAGIMALPAT+K LGL  G+ 
Sbjct:    24 APLLPEC----HGDEVAHDE-FNGASFSGAVFNLATTIIGAGIMALPATMKILGLGLGIT 78

Query:    77 MIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYM 136
             MIV++ +LT++SI+ ++RFS+A K+ +Y G++  +FG  GR LLQV ++VNN+G+L+VYM
Sbjct:    79 MIVVMAFLTDASIEFLLRFSKAGKNRSYGGLMGGSFGNPGRILLQVAVLVNNIGVLIVYM 138

Query:   137 IIIGDVLSGAWLNGVHHSGVTEEWFGQHWWXXXXXXXXXXXXXXXXXXISFRRVDSLRYT 196
             IIIGDVL+G   +G+HH GV E WFG HWW                    F+R+DSL++T
Sbjct:   139 IIIGDVLAGKTEDGIHHFGVLEGWFGHHWWNGRAAILLITTLGVFAPLACFKRIDSLKFT 198

Query:   197 SALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICH 256
             SALSV LA+VF++ITAG++I+K I G ++MP LLP+++   SFW LFT  PVLVTA+ICH
Sbjct:   199 SALSVALAVVFLIITAGISIMKLISGGVAMPRLLPDVTDLTSFWNLFTVVPVLVTAFICH 258

Query:   257 HNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGI 316
             +N+H I+NEL+DP+QI+ +VR+++ LCS+VYI TS FG LLFGD TLDDVLANFD DLGI
Sbjct:   259 YNVHSIQNELEDPSQIRPVVRSALMLCSSVYIMTSIFGFLLFGDDTLDDVLANFDTDLGI 318

Query:   317 PYSSLLDDVVRVSYGIHLMLVFPIVFFSLRLNLDGLLFPYAIPIAFDNRRFFAVTAALMG 376
             P+ S+L+D VRVSY +HLMLVFPIVF+ LR+N+DGLLFP A  ++  N RF  +TA L+ 
Sbjct:   319 PFGSILNDAVRVSYALHLMLVFPIVFYPLRINIDGLLFPSARSLSTSNVRFGCLTAGLIS 378

Query:   377 FIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIATKNDRLASWLMIXXXX 436
              IF+GANF+PSIWDAFQFTGATAAV +GFIFPA+I L+D H  AT  D   +  MI    
Sbjct:   379 VIFLGANFIPSIWDAFQFTGATAAVCLGFIFPASIILKDRHDKATNRDTTLAIFMIVLAV 438

Query:   437 XXXXXXXXXDIYSIF 451
                      D Y++F
Sbjct:   439 LSNAIAIYSDAYALF 453
GO:0005886 "plasma membrane" evidence=ISM
GO:0006865 "amino acid transport" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0005773 "vacuole" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
TAIR|locus:2166615 AT5G38820 "AT5G38820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2063068 AT2G40420 "AT2G40420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078381 AT3G56200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198968 AT1G80510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040718-395 slc38a5b "solute carrier family 38, member 5b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F8VX04 SLC38A1 "Sodium-coupled neutral amino acid transporter 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F6XT35 SLC38A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|I3LB54 SLC38A10 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H2H9 SLC38A1 "Sodium-coupled neutral amino acid transporter 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00015000001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (449 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query456
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 2e-42
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 2e-24
PTZ00206467 PTZ00206, PTZ00206, amino acid transporter; Provis 3e-22
TIGR00837381 TIGR00837, araaP, aromatic amino acid transport pr 5e-07
pfam03222393 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine perme 2e-06
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  154 bits (391), Expect = 2e-42
 Identities = 90/383 (23%), Positives = 165/383 (43%), Gaps = 33/383 (8%)

Query: 39  DGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMI------ 92
              S   AVFNL   I+GAG+++LP   K+LG IPGLI++V+VG ++  ++ ++      
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 93  MRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVH 152
           +   +  +  +Y  +    FG  G+ L+   I+VN  G+ + Y+I  GD L   + +   
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFD 120

Query: 153 HSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITA 212
                                ++    +F+PL     + +L   S ++   A+  + I  
Sbjct: 121 T------------CHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVA---AVSSLYIVI 165

Query: 213 GVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDP--- 269
            V  V  +    +               +LF    ++V A+  H  + PI+N +K P   
Sbjct: 166 LVLSVAELGVLTAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKF 225

Query: 270 TQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLDDVVRVS 329
             +  ++ T+I + + +YI     G L FG+    ++L N       P S  L D+  + 
Sbjct: 226 KAMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNL------PKSDWLIDIANLL 279

Query: 330 YGIHLMLVFPIVFFSLRLNLDGLLFPYAIPIAFDNR---RFFAVTAALMGFIFVGANFVP 386
             +HL+L +P+  F +R  ++ LLF        + +       + + L+   ++ A  VP
Sbjct: 280 LVLHLLLSYPLQAFPIRQIVENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISVP 339

Query: 387 SIWDAFQFTGATAAVSVGFIFPA 409
            + D     GAT+   + FI P 
Sbjct: 340 FLGDFLSLVGATSGAPLTFILPP 362

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|233146 TIGR00837, araaP, aromatic amino acid transport protein Back     alignment and domain information
>gnl|CDD|112053 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine permease family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 456
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
PLN03074473 auxin influx permease; Provisional 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.94
PRK10483414 tryptophan permease; Provisional 99.93
PRK09664415 tryptophan permease TnaB; Provisional 99.93
PRK15132403 tyrosine transporter TyrP; Provisional 99.93
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.92
PRK13629443 threonine/serine transporter TdcC; Provisional 99.91
TIGR00814397 stp serine transporter. The HAAAP family includes 99.86
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.71
PRK10655438 potE putrescine transporter; Provisional 99.63
PRK10249458 phenylalanine transporter; Provisional 99.63
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.62
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.61
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.6
TIGR00911501 2A0308 L-type amino acid transporter. 99.59
PRK10644445 arginine:agmatin antiporter; Provisional 99.59
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.57
PRK15049499 L-asparagine permease; Provisional 99.57
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.57
TIGR00909429 2A0306 amino acid transporter. 99.56
PRK11021410 putative transporter; Provisional 99.55
PRK11387471 S-methylmethionine transporter; Provisional 99.55
PRK10238456 aromatic amino acid transporter; Provisional 99.54
PRK10746461 putative transport protein YifK; Provisional 99.54
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.53
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.51
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.5
PRK10836489 lysine transporter; Provisional 99.5
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.49
TIGR00913478 2A0310 amino acid permease (yeast). 99.48
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.47
TIGR00930 953 2a30 K-Cl cotransporter. 99.46
PF03845320 Spore_permease: Spore germination protein; InterPr 99.42
PRK10580457 proY putative proline-specific permease; Provision 99.42
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.33
COG0531466 PotE Amino acid transporters [Amino acid transport 99.3
KOG3832319 consensus Predicted amino acid transporter [Genera 99.19
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.16
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.13
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.07
PRK15238496 inner membrane transporter YjeM; Provisional 99.07
COG0833541 LysP Amino acid transporters [Amino acid transport 99.03
KOG1286554 consensus Amino acid transporters [Amino acid tran 99.0
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 98.96
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 98.9
COG3949349 Uncharacterized membrane protein [Function unknown 98.81
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.67
PRK11375484 allantoin permease; Provisional 98.65
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 98.63
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.47
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.44
PRK12488549 acetate permease; Provisional 98.44
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.33
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 98.31
COG1457442 CodB Purine-cytosine permease and related proteins 98.26
TIGR00813407 sss transporter, SSS family. have different number 98.24
KOG1289550 consensus Amino acid transporters [Amino acid tran 98.24
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.23
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.07
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 97.94
PRK09395551 actP acetate permease; Provisional 97.92
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.88
PRK11017404 codB cytosine permease; Provisional 97.79
PRK00701439 manganese transport protein MntH; Reviewed 97.67
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 97.67
PRK15419502 proline:sodium symporter PutP; Provisional 97.51
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.49
PRK10484523 putative transporter; Provisional 97.46
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 97.45
TIGR00835425 agcS amino acid carrier protein. Members of the AG 97.37
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.31
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 97.19
COG4147529 DhlC Predicted symporter [General function predict 96.75
COG0733439 Na+-dependent transporters of the SNF family [Gene 96.2
PRK15015 701 carbon starvation protein A; Provisional 96.19
KOG1288 945 consensus Amino acid transporters [Amino acid tran 96.09
COG1966 575 CstA Carbon starvation protein, predicted membrane 95.49
KOG2466572 consensus Uridine permease/thiamine transporter/al 95.46
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 95.0
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 94.9
PF01566358 Nramp: Natural resistance-associated macrophage pr 94.81
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 92.56
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 92.14
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 91.71
PRK15433439 branched-chain amino acid transport system 2 carri 86.64
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 85.31
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 81.1
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6.7e-56  Score=446.41  Aligned_cols=397  Identities=22%  Similarity=0.321  Sum_probs=315.8

Q ss_pred             CCCccHHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcchhHH
Q 012823           38 IDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGR  117 (456)
Q Consensus        38 ~~~~s~~~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~  117 (456)
                      -...+..++++|++|+++|+|+|++|++|+++||+.|++++++++.++.||.+++.++.++.+..+|+|++++++||+++
T Consensus        57 ~~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~~~sY~~la~~~~G~~g~  136 (467)
T PTZ00206         57 IPPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTNIRTYEGVARVLLGPWGS  136 (467)
T ss_pred             cCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhCHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhhhhh
Q 012823          118 ALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTS  197 (456)
Q Consensus       118 ~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s  197 (456)
                      +++++++.+.++|.|++|+++.+|.++.+++...    . .++.+.. +..+. +..++++++++|++++|++++++++|
T Consensus       137 ~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~----~-~~~~~~~-~~~r~-~~~~i~~~i~lPLs~~r~i~~L~~~S  209 (467)
T PTZ00206        137 YYVAATRAFHGFSACVAYVISVGDILSATLKGTN----A-PDFLKQK-SGNRL-LTSLMWLCFMLPLVIPRHIDSLRYVS  209 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----c-cchhhhc-cCcEE-eeeehhhhHhhhcccccchHHHHHHH
Confidence            9999999999999999999999999987765310    0 1111111 11222 23344566899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCC---CC----CCCcccccchhhhHHHHhhhhhhhhhhhhchhHHHhhcCCCc
Q 012823          198 ALSVGLAIVFVVITAGVAIVKTIDGSISM---PC----LLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT  270 (456)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~p~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~  270 (456)
                      .+++. ++++.++.+.  ++...++..+.   .+    ..++........+.+.++|+++|||.||.+++++++|||||+
T Consensus       210 ~i~~~-~i~~~vi~iv--i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t  286 (467)
T PTZ00206        210 TIAVS-FMVYLVIVIV--VHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRS  286 (467)
T ss_pred             HHHHH-HHHHHHhhhh--hhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccc
Confidence            99984 3333333221  12222221110   00    011111112234578899999999999999999999999865


Q ss_pred             --chhHHHHHHHHHHHHHHHHHHhhhhhhcCCCcchhhhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 012823          271 --QIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRLN  348 (456)
Q Consensus       271 --~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~~~~~~~~~  348 (456)
                        |+.++...++.+++++|..+|++||+.||+++++|++.|+++.+     ++...+.++...+.+..+||++.+|+|+.
T Consensus       287 ~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~-----~~~~~v~~~~~~~~v~~sypL~~~p~r~~  361 (467)
T PTZ00206        287 VGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVN-----EPAIMVGFVGVLVKLFVSYALLGMACRNA  361 (467)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCC-----CchhhHHHHHHHHHHHHhhhhhhhhHHHH
Confidence              88899999999999999999999999999999999999995432     45667888889999999999999999999


Q ss_pred             HHHhcCCCCCCCCCCCcchhhHHHHHHHHHHHHHhhcCChHHHHHhhchhhhhhHHHhhhhhHHhhh---cCCCCcchhh
Q 012823          349 LDGLLFPYAIPIAFDNRRFFAVTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRD---THGIATKNDR  425 (456)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~i~~l~Ga~~~~~~~filP~~~yl~~---~~~~~~~~~~  425 (456)
                      +++.+.++.++  .+.+++...+..+...+.++|+++|+++.+++++||++++.++|++|+++|++.   ++++..++++
T Consensus       362 i~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~  439 (467)
T PTZ00206        362 LYDVIGWDARK--VAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYY  439 (467)
T ss_pred             HHHHhCCCccc--CchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHH
Confidence            99887443322  233344444555666778999999999999999999999999999999999983   2222334456


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012823          426 LASWLMISLAVSSSTVAVSSDIYSIF  451 (456)
Q Consensus       426 ~~~~~i~~~g~~~~v~~~~~~i~~i~  451 (456)
                      +.++.++++|+++.+.|||+++++.+
T Consensus       440 ~~~~~lli~Gv~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        440 ISTYVVLITGVIAIVFGTGATIWGVT  465 (467)
T ss_pred             HHHHHHHHHHhheEEecchhHhhHHh
Confidence            78999999999999999999999976

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query456
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 44.5 bits (104), Expect = 7e-05
 Identities = 53/434 (12%), Positives = 116/434 (26%), Gaps = 140/434 (32%)

Query: 105 SGVVADAFGGAGRALLQVCIVVNNLGMLV-----VYMIIIGDV----------------L 143
             V+ D   G+G+  +    V  +  +       ++ + + +                 +
Sbjct: 151 KNVLIDGVLGSGKTWV-ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 144 SGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLP--LISFRRVDSLRYTSALSV 201
              W +   HS   +     H        LL +  +      L+    V + +  +A ++
Sbjct: 210 DPNWTSRSDHSSNIK--LRIHSIQAELRRLLKSKPY---ENCLLVLLNVQNAKAWNAFNL 264

Query: 202 GLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWK-----LFTTF--------PV 248
              I  ++ T    +   +  + +    L   S   +        L   +        P 
Sbjct: 265 SCKI--LLTTRFKQVTDFLSAATTTHISLDHHSM--TLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 249 LVTAYICHHNIHP-----IENELKDPT------------QIKSIVRTSITLCSTVYITTS 291
            V         +P     I   ++D              ++ +I+ +S+ +         
Sbjct: 321 EV------LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 292 FFGLLLFGDRTLDDVLANFDGDLGIPY------------------------SSLLD-DVV 326
           F  L +F                 IP                          SL++    
Sbjct: 375 FDRLSVF----PPSAH--------IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 327 RVSYGIHLMLVFPIVFFSLRLNLDG-------LLFPYAIPIAFDNRRFFAVTAALMGFIF 379
             +  I        ++  L++ L+        ++  Y IP  FD+         L  + +
Sbjct: 423 ESTISIPS------IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY--LDQYFY 474

Query: 380 --VG-----------ANFVPSIWDAFQFTGA------TAAVSVGFIFPAAIALRDTHGIA 420
             +G                 ++  F+F         TA  + G I      L+      
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534

Query: 421 TKNDRLASWLMISL 434
             ND     L+ ++
Sbjct: 535 CDNDPKYERLVNAI 548

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query456
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.74
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.6
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 99.43
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.81
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 98.39
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 97.92
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 92.46
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.74  E-value=2.5e-15  Score=150.89  Aligned_cols=355  Identities=11%  Similarity=0.000  Sum_probs=210.0

Q ss_pred             cCCCCccHHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcch
Q 012823           36 AGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGG  114 (456)
Q Consensus        36 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~l~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~  114 (456)
                      +.+|+.+.++.+...+++++|+|++.+|....++|.. +++..++.+++.......+.|..++. +.....+..++.+||
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~   83 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGP   83 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCH
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCC
Confidence            4568899999999999999999999999888888974 78888888888888888888887654 445788889999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCccCCCcchhhhcccccchhHHHHHHHHHHHhhccccccccchhh
Q 012823          115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR  194 (456)
Q Consensus       115 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~  194 (456)
                      +..++......+........+....++.+...+++.           +++    -.........+++.-....+..+...
T Consensus        84 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~----~~~~~~~~~~~~~~~~in~~g~~~~~  148 (445)
T 3l1l_A           84 FLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-----------KDP----WVLTITCVVVLWIFVLLNIVGPKMIT  148 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG-----------GSH----HHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc-----------ccc----HHHHHHHHHHHHHHHHHHHhchHHHH
Confidence            999999999888877777778888888776544320           000    01111111222222233334555555


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccc--ccchhhhHHHHhhhhhhhhhhhhchhHHHhhcCCCc-c
Q 012823          195 YTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEIS--KQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-Q  271 (456)
Q Consensus       195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~p~-~  271 (456)
                      .++.+.....+...++.+   +......+.  ....+.+.  ...++.++..++....|+|.+........+|+|||+ +
T Consensus       149 ~~~~~~~~~~i~~~~~~~---i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~  223 (445)
T 3l1l_A          149 RVQAVATVLALIPIVGIA---VFGWFWFRG--ETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRN  223 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHH---HTTSTTCCC--CCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHhCh--hhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccc
Confidence            554444322222221111   111111111  11111111  112356788899999999999999999999999996 6


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhhcCCCcch----hhhhCCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 012823          272 IKSIVRTSITLCSTVYITTSFFGLLLFGDRTLD----DVLANFDGDLGIPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRL  347 (456)
Q Consensus       272 ~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~----~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~s~p~~~~~~~~  347 (456)
                      .+|++..+..++.++|....+......+.+...    +..+-..+-    .+++...+..+...+..+.+.....+...+
T Consensus       224 ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR  299 (445)
T 3l1l_A          224 VPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMA----LGDTAGAIVSFCAAAGCLGSLGGWTLLAGQ  299 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHH----HCTTHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999988877666543211    111100000    012333444555555655565555555555


Q ss_pred             HHHHhcCCCCCCC-----C-CCCcchhhHHHHHHHHHHHHHhh--c----CChHHHHHhhchhhhhhHHHhhhhhHHhhh
Q 012823          348 NLDGLLFPYAIPI-----A-FDNRRFFAVTAALMGFIFVGANF--V----PSIWDAFQFTGATAAVSVGFIFPAAIALRD  415 (456)
Q Consensus       348 ~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~ia~~--~----~~~~~i~~l~Ga~~~~~~~filP~~~yl~~  415 (456)
                      .+.....++.-|+     + .+...+...  ...+.+.++...  .    ..++.+.++.+  ....+.|.++.+.+++.
T Consensus       300 ~~~~~a~dg~lP~~~~~~~~~~~P~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~  375 (445)
T 3l1l_A          300 TAKAAADDGLFPPIFARVNKAGTPVAGLI--IVGILMTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLL  375 (445)
T ss_dssp             HHHHHHHTTSSCGGGGCCCTTCCCHHHHH--HHHHHHHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCcHHHHhcCCCCCCHHHHH--HHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            4444332222111     0 111112111  111212222222  1    34566666643  45567788999988886


Q ss_pred             cCCC
Q 012823          416 THGI  419 (456)
Q Consensus       416 ~~~~  419 (456)
                      ++++
T Consensus       376 r~~~  379 (445)
T 3l1l_A          376 GHGH  379 (445)
T ss_dssp             HSSS
T ss_pred             hhcC
Confidence            6554
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query456
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 93.5
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.50  E-value=3.1  Score=39.10  Aligned_cols=101  Identities=21%  Similarity=0.208  Sum_probs=65.5

Q ss_pred             ccHHHHHHHHHHHHHhhhhc-hHHHHH-HhhC---hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcchh
Q 012823           41 ASFSGAVFNLSTTIVGAGIM-ALPATV-KELG---LIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGA  115 (456)
Q Consensus        41 ~s~~~~~~~li~~~iG~GiL-~lP~~f-~~~G---~~~gii~li~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~  115 (456)
                      .|..+-++..++..+|.|=+ -.||-. +++|   .++=++++++++.=..+--..+.|..++.+...+..++....+++
T Consensus         5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~i~~~~~i~~~~~~~~   84 (509)
T d2a65a1           5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNR   84 (509)
T ss_dssp             SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSCSH
T ss_pred             CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhccCc
Confidence            45667788889999999754 789875 5566   344445555555555555566667667778889998888877655


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012823          116 GRALLQVCIVVNNLGMLVVYMIIIGD  141 (456)
Q Consensus       116 ~~~~~~~~~~~~~~g~~~~y~~~~~~  141 (456)
                      ....+.....+..+..++-|.+..+-
T Consensus        85 ~~~giG~~~~~~~~~i~~yy~vi~~w  110 (509)
T d2a65a1          85 FAKILGVFGLWIPLVVAIYYVYIESW  110 (509)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHH
Confidence            44444455555555555555555444