Citrus Sinensis ID: 012848

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-----
Protein Sequence
MSRVLTFRNIWRAAQSVLTNERGYHSELTKYGAVVAVGLRVPYYRFYSHYGFPSGGHCSVPVYNVKQLLCRSCSVRSLSVASASSVATHQAQIAWKRLFYYSSFRDQIFPCISRIAQAFSLALTRSPLLVPGIIAFTSGQLAWAQRVSAETEYFPSQNAFYTRAQDGHAFVTSVLYSLVECVILLMRALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLRTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVPYLNN
Secondary Structure (PSIPRED)
cccEEEEcHHHHHHHHHHcccccccccEEEcccccccccccHHHHHHHcccccccccccccccccccHHcccccccEEEcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHEEEEccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccEEEccccccccccccEEEEccccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHcccccccEEcccccEEEccccccccEEEEEEEccccccccEHHHHcHHHHccccccccEEEEccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccEEEEEHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccHHcHHHHHHHHHHHHHcccEEEEHHHHHccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHcccccEEHHHHHHHHEEEEccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHcHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcEEEEEcccccEEEEEEcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHEEEEcccc
Coil and Loop (DISEMBL)
MSRVLTFRNIWRAAQSVLTNERGYHSELTKYGAVVAVGLRVpyyrfyshygfpsgghcsvpvynvkqLLCRSCSVRSLSVASASSVATHQAQIAWKRLFYYSSFRDQIFPCISRIAQAFSLAltrspllvpgiiaFTSGQLAWAQRVSAeteyfpsqnafytraqdgHAFVTSVLYSLVECVILLMRALYLgvlfspsimmapfadsfgpqFRELWLHVVLRTLETagpafikwgqwaatrpdlfprDLCKKLselhskapehsfaYTKKTIERAFGRRLSEifdgfeeapvasgsIAQVHRASlrfrypgqkvkpIVVAVKvrhpgvgesirRDFVIINLAAKissvipavkwlRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFrrwkdvsfpkpvyplvhpAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVPYLNN
Flexible Loop (DISEMBL)
MSRVLTFRNIWRAAQSvltnergyhseltKYGAVVAVGLRVPYYRFYSHYGFPSGGHCSVPVYNVKQLLCRSCSVRSLSVASASSVATHQAQIAWKRLFYYSSFRDQIFPCISRIAQAFSLALTRSPLLVPGIIAFTSGQLAWAQRVSAETEYFPSQNAFYTRAQDGHAFVTSVLYSLVECVILLMRALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLRTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSElhskapehsfaytkKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLrfrypgqkvkpiVVAVKvrhpgvgesirrdFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVPYLNN
Low Complexity Region (SEG)
MSRVLTFRNIWRAAQSVLTNERGYHSELTKYGAVVAVGLRVPYYRFYSHYGFPSGGHCSVPVYNVKQllcrscsvrslsvasassvaTHQAQIAWKRLFYYSSFRDQIFPCISRIAQAFSLALTRSPLLVPGIIAFTSGQLAWAQRVSAETEYFPSQNAFYTRAQDGHAFVTSVLYSLVECVILLMRALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLRTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVPYLNN
Disordered region (IsUnstruct)
***VLTFRNIWRAAQSVLTNERGYHSELTKYGAVVAVGLRVPYYRFYSHYGFPSGGHCSVPVYNVKQLLCRSCSVRSLSVASASSVATHQAQIAWKRLFYYSSFRDQIFPCISRIAQAFSLALTRSPLLVPGIIAFTSGQLAWAQRVSAETEYFPSQNAFYTRAQDGHAFVTSVLYSLVECVILLMRALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLRTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELH****EHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVPYL**
Disordered Region (DISOPRED)
**R****RNIWRAAQSVL************YGAVVAVGLRVPYYRFYSHYGFPSGGHCSVPVYNVKQLLCRSCSV***********ATHQAQIAWKRLFYYSSFRDQIFPCISRIAQAFSLALTRSPLLVPGIIAFTSGQL**********************AQDGHAFVTSVLYSLVECVILLMRALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLRTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVPYLN*
Disordered Region (DISEMBL)
MSRVLTFRNIWRAAQSVLTNERGYHSELTKYGAVVAVGLRVPYYRFYSHYGFPSGGHCSVPVYNVKQLLCRSCSVR*************QAQIAWKRLFYYSSFRDQIFPCISRIAQAFSLALTRSPLLVPGIIAFTSGQLAWAQRVSAETEYFPSQNAFYTRAQDGHAFVTSVLYSLVECVILLMRALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLRTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVPYLNN
Disordered Region (DISPRO)
*SRVLTFRNIWRAAQSVLTNERGYHSELTKYGAVVAVGLRVPYYRFYSHYGFPSGGHCSVPVYNVKQLLCRSCSVRSLSVASASSVATHQAQIAWKRLFYYSSFRDQIFPCISRIAQAFSLALTRSPLLVPGIIAFTSGQLAWAQRVSAETEYFPSQNAFYTRAQDGHAFVTSVLYSLVECVILLMRALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLRTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVPYLNN
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSRVLTFRNIWRAAQSVLTNERGYHSELTKYGAVVAVGLRVPYYRFYSHYGFPSGGHCSVPVYNVKQLLCRSCSVRSLSVASASSVATHQAQIAWKRLFYYSSFRDQIFPCISRIAQAFSLALTRSPLLVPGIIAFTSGQLAWAQRVSAETEYFPSQNAFYTRAQDGHAFVTSVLYSLVECVILLMRALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLRTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVPYLNN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	455	2.2.26 [Sep-21-2011]
Q55G83	689	Probable serine/threonine	yes	no	0.569	0.375	0.428	3e-55
Q9P7M0	692	ABC1 family protein C21C3	yes	no	0.582	0.382	0.346	1e-40
Q02981	657	ABC1 family protein YPL10	yes	no	0.538	0.372	0.335	2e-37
A1TTA2	522	Probable ubiquinone biosy	yes	no	0.450	0.392	0.359	2e-24
B9ME24	521	Probable ubiquinone biosy	yes	no	0.476	0.416	0.331	3e-23
A1W4D7	521	Probable ubiquinone biosy	yes	no	0.476	0.416	0.327	6e-23
Q9K0N0	503	Probable ubiquinone biosy	yes	no	0.415	0.375	0.343	1e-22
C5CWY2	521	Probable ubiquinone biosy	yes	no	0.534	0.466	0.300	1e-22
Q7Z695	626	Uncharacterized aarF doma	yes	no	0.338	0.246	0.403	2e-22
A9BP42	521	Probable ubiquinone biosy	yes	no	0.450	0.393	0.331	6e-22

>sp|Q55G83|ABKC_DICDI Probable serine/threonine-protein kinase abkC OS=Dictyostelium discoideum GN=abkC PE=3 SV=1

 Score =  216 bits (550), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 117/273 (42%), Positives = 168/273 (61%), Gaps = 14/273 (5%)

Query: 179 VECVILLMRALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLRTLETAGPAFIKWGQWA 238
           +  V + +R L LG++  PS++  P    F P  +ELW  ++L T++ +G  +IK+GQW 
Sbjct: 151 INLVKIGIRVLELGLILLPSVLTFPCC--FIPGVKELWWQLLLETIQFSGTCWIKFGQWI 208

Query: 239 ATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAF-GRRLSEIFDGFEEAPVASGSI 297
           +TRPDLFP  L +K S+LHS+ P HSF +T ++IE +F G+ + ++F  F+E P+ASGS+
Sbjct: 209 STRPDLFPDLLIEKFSQLHSQCPSHSFQFTNESIENSFNGKSIKDLFLWFDEEPMASGSV 268

Query: 298 AQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRL 357
           AQVH+A       G+     V  VKV HP V  +I+RDF II       S IP +KWL L
Sbjct: 269 AQVHKA---LTMDGK-----VAVVKVLHPNVKSNIKRDFFIIYSLIWAFSHIPEMKWLSL 320

Query: 358 DESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGE 417
            ES+ +F   MM Q DL  EA+HL+RF  NF+   +V FPKP+YPLV   VLVE++E G 
Sbjct: 321 PESILEFGKSMMKQADLELEASHLNRFNSNFKYNSEVIFPKPLYPLVSKEVLVESFEPGS 380

Query: 418 CVSRYVDELQGHERLKSALAHIGTHALLKMLLV 450
            +  ++ +   H      LA IG  A ++M+LV
Sbjct: 381 PIMDFIKKNDHH---NPTLAKIGLSAYMQMMLV 410

Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: -

>sp|Q9P7M0|YOS3_SCHPO ABC1 family protein C21C3.03, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC21C3.03 PE=3 SV=2

 Score =  167 bits (423), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 103/297 (34%), Positives = 151/297 (50%), Gaps = 32/297 (10%)

Query: 184 LLMRALYLGVLFSPSIMMAPFA--------DSFGPQFRELWLHVVLRTLETAGPAFIKWG 235
           +L+R+  L ++FSP I+  PF          S       +WL  ++  LE AG  FIK G
Sbjct: 154 ILLRSFNLFIIFSPIIITLPFIALISFLHLRSLSSLTVSIWLRFLVTQLERAGATFIKLG 213

Query: 236 QWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFG-RRLSEIFDGFEEAPVAS 294
           QWAA+R DLFP   CK LS+LHS    HS AYT+  I + +    + EIF  F   P+  
Sbjct: 214 QWAASRTDLFPPAFCKTLSKLHSHVTPHSLAYTQSVICKTYKVESIEEIFVNFNPIPIGV 273

Query: 295 GSIAQVHRASLR-------------------FRYPGQKVKPIV--VAVKVRHPGVGESIR 333
           G+IAQV+ A+++                   FR       P+   VA+KV HP V + I 
Sbjct: 274 GAIAQVYTATIKKAATQQDNSYFTSMLQSIGFRQKNISDAPVTQDVAIKVLHPNVEKYIS 333

Query: 334 RDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKD 393
            D  I+   AK+ +++P++KWL L + V+ F   +  Q++L  EA HL++F  NFR  + 
Sbjct: 334 LDLQILGFFAKLINLVPSMKWLSLPDEVKVFGAMLNQQLNLHYEALHLNQFRLNFRGNRY 393

Query: 394 VSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLV 450
           V FP P        +L+E Y  G  +S ++    G       LA+ G +AL +ML+V
Sbjct: 394 VEFPAPYDDYTTNQILLEDYMPGIPLSAFLKHKSG--PFNKLLANTGNNALFQMLIV 448

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q02981|YP109_YEAST ABC1 family protein YPL109C, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPL109C PE=1 SV=2

 Score =  157 bits (397), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/268 (33%), Positives = 141/268 (52%), Gaps = 23/268 (8%)

Query: 177 SLVECVILLMRALYLGVLFSPSIMMAPFADSFGPQFR------------ELWLHVVLRTL 224
           ++VE V  ++R L +  +F P +++ P +  FG + +             +W  ++ + L
Sbjct: 111 NIVEPVCTILRFLEISAIFLPLLLLYPIS-WFGHKLKITDTNITETRGSLIWCQLLRKAL 169

Query: 225 ETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFG-RRLSEI 283
           E AGP+FIK GQWA +R D+F   LC +L +LHS    HS ++T + + +A    ++ + 
Sbjct: 170 ELAGPSFIKLGQWAGSRTDIFSHALCHELGKLHSNVTAHSLSFTLEKLSQALKVDKIEDA 229

Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVV--------AVKVRHPGVGESIRRD 335
           FD F   P+  GSIAQV+   L  +Y   K   I +        A+K+ HP V   IRRD
Sbjct: 230 FDEFNRTPIGVGSIAQVYVGELSQKYI-DKYDNIQIGKDGNRWCAIKILHPNVRSQIRRD 288

Query: 336 FVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVS 395
             I+   A   + IP ++WL L   V QF++ M  Q+DL  EA +L RF  NF+    V 
Sbjct: 289 LKIMKFCADAINWIPTMEWLSLPSEVDQFSILMNIQLDLRIEALNLERFNENFKNSIQVK 348

Query: 396 FPKPVYPLVHPAVLVETYEQGECVSRYV 423
           FPKP  PL +  V+ E +  G  + +++
Sbjct: 349 FPKPFLPLSNRDVMFEEHVYGLSMEKFL 376

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|A1TTA2|UBIB_ACIAC Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax citrulli (strain AAC00-1) GN=ubiB PE=3 SV=1

 Score =  114 bits (284), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/217 (35%), Positives = 115/217 (52%), Gaps = 12/217 (5%)

Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
           LE  GP F+K+GQ  +TR DL P D+  +L+ L  + P         TIERAF R + E+
Sbjct: 57  LERLGPIFVKFGQVLSTRRDLLPPDIANELALLQDRVPPFDPDVAVATIERAFRRPVGEV 116

Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIIN-LA 342
           F  FE  PVAS SIAQVH A +R R+  ++     VAVKV  PG+   I  D  ++  +A
Sbjct: 117 FVSFERVPVASASIAQVHFAIVRDRHGVER----EVAVKVLRPGMLPVIDNDLGLMRAMA 172

Query: 343 AKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP 402
             + S+    K L+  + V +F  ++  ++DL REAA+ ++   N  R   V  P+ ++ 
Sbjct: 173 GWVESLSADGKRLKPRQVVAEFDNYLHDELDLIREAANAAQLRRNMERLGLVRIPEILWD 232

Query: 403 LVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHI 439
             HP VLV    +G  +S+        ERL++A   I
Sbjct: 233 FCHPEVLVMERMKGVPISQI-------ERLRAAGVDI 262

Required, probably indirectly, for the hydroxylation of 2-octaprenylphenol to 2-octaprenyl-6-hydroxy-phenol, the fourth step in ubiquinone biosynthesis.

Acidovorax citrulli (strain AAC00-1) (taxid: 397945)

>sp|B9ME24|UBIB_ACIET Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax ebreus (strain TPSY) GN=ubiB PE=3 SV=1

 Score =  110 bits (274), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/247 (33%), Positives = 120/247 (48%), Gaps = 30/247 (12%)

Query: 212 FRELWLHVVLRT------------------LETAGPAFIKWGQWAATRPDLFPRDLCKKL 253
           FR+ WL  V R                   LE+ GP F+K+GQ  +TR DL P D+  +L
Sbjct: 27  FRQPWLRAVTRVITFGRKLDAPRGQRLREALESLGPIFVKFGQVLSTRRDLMPPDIADEL 86

Query: 254 SELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQK 313
           + L  + P         TIERAF R + E+F  F+  PVAS SIAQVH A +R R    +
Sbjct: 87  ALLQDRVPPFDPDVAIATIERAFRRPIGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAR 146

Query: 314 VKPIVVAVKVRHPGVGESIRRDFVIINLAAK-ISSVIPAVKWLRLDESVQQFAVFMMSQV 372
                VAVKV  PG+   I +D  ++ + A  + S+    K L+  E V +F  ++  ++
Sbjct: 147 ----EVAVKVLRPGMLPVIDKDLALMRMMAGWVESLSADGKRLKPREVVAEFDNYLHDEL 202

Query: 373 DLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERL 432
           DL REAA+ ++   N +    V  P+  +   H  VLV    +G  +++        ERL
Sbjct: 203 DLVREAANAAQLRRNMQGLDLVLIPEVFWDFCHAEVLVMERMKGVPINQV-------ERL 255

Query: 433 KSALAHI 439
           +SA   I
Sbjct: 256 RSAGVDI 262

Required, probably indirectly, for the hydroxylation of 2-octaprenylphenol to 2-octaprenyl-6-hydroxy-phenol, the fourth step in ubiquinone biosynthesis.

Acidovorax ebreus (strain TPSY) (taxid: 535289)

>sp|A1W4D7|UBIB_ACISJ Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax sp. (strain JS42) GN=ubiB PE=3 SV=1

 Score =  109 bits (272), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/247 (32%), Positives = 120/247 (48%), Gaps = 30/247 (12%)

Query: 212 FRELWLHVVLRT------------------LETAGPAFIKWGQWAATRPDLFPRDLCKKL 253
           FR+ WL  V R                   LE+ GP F+K+GQ  +TR DL P D+  +L
Sbjct: 27  FRQPWLRAVTRVITFGRKLDAPRGQRLREALESLGPIFVKFGQVLSTRRDLMPPDIADEL 86

Query: 254 SELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQK 313
           + L  + P         TIERAF R + E+F  F+  PVAS SIAQVH A +R R    +
Sbjct: 87  ALLQDRVPPFDPDVAIATIERAFRRPIGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAR 146

Query: 314 VKPIVVAVKVRHPGVGESIRRDFVIINLAAK-ISSVIPAVKWLRLDESVQQFAVFMMSQV 372
                VAVKV  PG+   I +D  ++ + A  + S+    K L+  E V +F  ++  ++
Sbjct: 147 ----EVAVKVLRPGMLPVIDKDLALMRMMAGWVESLSADGKRLKPREVVAEFDNYLHDEL 202

Query: 373 DLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERL 432
           DL REAA+ ++   N +    V  P+  +   H  VLV    +G  +++        +RL
Sbjct: 203 DLVREAANAAQLRRNMQGLDLVLIPEVFWDFCHAEVLVMERMKGVPINQV-------DRL 255

Query: 433 KSALAHI 439
           +SA   I
Sbjct: 256 RSAGVDI 262

Required, probably indirectly, for the hydroxylation of 2-octaprenylphenol to 2-octaprenyl-6-hydroxy-phenol, the fourth step in ubiquinone biosynthesis.

Acidovorax sp. (strain JS42) (taxid: 232721)

>sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein UbiB OS=Neisseria meningitidis serogroup B (strain MC58) GN=ubiB PE=3 SV=1

 Score =  108 bits (269), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 106/198 (53%), Gaps = 9/198 (4%)

Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
           LE+ GP FIK+GQ  +TRPDL P D   +L++L  K P      +++ IE++ G+ + ++
Sbjct: 58  LESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSLGQSIEKL 117

Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAA 343
           +  FE  P+AS SIAQVH+A L   + G++     VAVKV  P +   I +D  ++   A
Sbjct: 118 YAEFETEPIASASIAQVHKARL---HSGEQ-----VAVKVLRPNLLPVIEQDLSLMRFGA 169

Query: 344 K-ISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP 402
             +  +    K L+  E V +F  ++  ++DL REAA+ S+   NF+    +  PK  Y 
Sbjct: 170 GWVERLFADGKRLKPREVVAEFDKYLHDELDLMREAANASQLGRNFQNSDMLIVPKVFYD 229

Query: 403 LVHPAVLVETYEQGECVS 420
                VL   +  G  VS
Sbjct: 230 YCTSDVLTIEWMDGTPVS 247

Required, probably indirectly, for the hydroxylation of 2-octaprenylphenol to 2-octaprenyl-6-hydroxy-phenol, the fourth step in ubiquinone biosynthesis.

Neisseria meningitidis serogroup B (strain MC58) (taxid: 122586)

>sp|C5CWY2|UBIB_VARPS Probable ubiquinone biosynthesis protein UbiB OS=Variovorax paradoxus (strain S110) GN=ubiB PE=3 SV=1

 Score =  107 bits (268), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 129/273 (47%), Gaps = 30/273 (10%)

Query: 186 MRALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLR------------------TLETA 227
           MR  Y G+      +     +     F++ WL VV R                   LE  
Sbjct: 1   MRRFYRGIFIVWVALRYGLDELVLTSFQKPWLRVVARIVSIGRNLDAPRGQRLREALERL 60

Query: 228 GPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGF 287
           GP F+K+GQ  +TR DL P D+  +L+ L  + P    A    TIERAF R + ++F  F
Sbjct: 61  GPIFVKFGQVLSTRRDLLPPDIADELAFLQDRVPPFPSAVAIATIERAFRRPVGDVFVQF 120

Query: 288 EEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAK-IS 346
           +E P+AS SIAQVH A++R      + +   VAVKV  P +   I +D  ++ + A  + 
Sbjct: 121 DETPIASASIAQVHFATIR----TDEGEVREVAVKVLRPSMRGVIEKDLALMAMMAGWVE 176

Query: 347 SVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHP 406
            + P  K L+  E V +F  ++  ++DL REAA+ ++   N    + V  P+  +   HP
Sbjct: 177 KLSPDGKRLKPREVVGEFDKYLHDELDLVREAANAAQLRRNMASLELVLIPEMFWDFCHP 236

Query: 407 AVLVETYEQGECVSRYVDELQGHERLKSALAHI 439
            V+V     G  +++        +RL++A   I
Sbjct: 237 EVIVMERMNGVPIAQL-------DRLRAAGVDI 262

Required, probably indirectly, for the hydroxylation of 2-octaprenylphenol to 2-octaprenyl-6-hydroxy-phenol, the fourth step in ubiquinone biosynthesis.

Variovorax paradoxus (strain S110) (taxid: 543728)

>sp|Q7Z695|ADCK2_HUMAN Uncharacterized aarF domain-containing protein kinase 2 OS=Homo sapiens GN=ADCK2 PE=2 SV=1

 Score =  107 bits (267), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/156 (40%), Positives = 88/156 (56%), Gaps = 2/156 (1%)

Query: 295 GSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKW 354
           GS A V RA +    P +    I VAVKV HPG+   +  D +++ + +++  V+P +KW
Sbjct: 285 GSNAGVSRAQVPGHQP-EATNLISVAVKVLHPGLLAQVHMDLLLMKIGSRVLGVLPGIKW 343

Query: 355 LRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYE 414
           L L E V++F   M+ Q+DL  EA +L  F  NFR  K V FP P+ P V   VLVETYE
Sbjct: 344 LSLPEIVEEFEKLMVQQIDLRYEAQNLEHFQVNFRNVKAVKFPTPLRPFVTREVLVETYE 403

Query: 415 QGECVSRYVDELQGHERLKSALAHIGTHALLKMLLV 450
           +   VS Y  +      LK  +A +G + LLKM+ V
Sbjct: 404 ESVPVSSY-QQAGIPVDLKRKIARLGINMLLKMIFV 438

The function of this protein is not yet clear. It is not known if it has protein kinase activity and what type of substrate it would phosphorylate (Ser, Thr or Tyr).

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|A9BP42|UBIB_DELAS Probable ubiquinone biosynthesis protein UbiB OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=ubiB PE=3 SV=1

 Score =  105 bits (263), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 111/217 (51%), Gaps = 12/217 (5%)

Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
           LE  GP F+K+GQ  +TR DL P D+ ++L+ L  + P         TIERAF ++L +I
Sbjct: 57  LEELGPIFVKFGQVLSTRSDLMPPDVAEELARLQDRVPPFDSQIAVDTIERAFRKKLDQI 116

Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAA 343
           F  FE  PVAS SIAQVH A +  R   Q+     VAVKV  PG+   I +D  ++++ A
Sbjct: 117 FVSFEREPVASASIAQVHFAVISDRNGVQR----DVAVKVLRPGMKTVIDKDLALMHMMA 172

Query: 344 K-ISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP 402
           + +  +    K L+  + V +F  ++  ++DL REA++ ++   N      V  P+  + 
Sbjct: 173 RWVERLSADGKRLKPRQVVAEFDNYLHDELDLIREASNAAQLRRNMEGLDLVLIPEVYWD 232

Query: 403 LVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHI 439
                V+V     G  +S+        ERL+ A   I
Sbjct: 233 FCRSDVMVMQRMTGVPISQV-------ERLREAGVDI 262

Required, probably indirectly, for the hydroxylation of 2-octaprenylphenol to 2-octaprenyl-6-hydroxy-phenol, the fourth step in ubiquinone biosynthesis.

Delftia acidovorans (strain DSM 14801 / SPH-1) (taxid: 398578)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	455
224078834	635	predicted protein [Populus trichocarpa]	0.980	0.702	0.696	0.0
356549423	625	PREDICTED: uncharacterized aarF domain-c	0.971	0.707	0.715	1e-178
224114105	609	predicted protein [Populus trichocarpa]	0.923	0.689	0.717	1e-175
356524754	622	PREDICTED: probable serine/threonine-pro	0.971	0.710	0.672	1e-169
449517365	624	PREDICTED: probable serine/threonine-pro	0.969	0.706	0.667	1e-169
297849522	624	ABC1 family protein [Arabidopsis lyrata	0.975	0.711	0.643	1e-163
42561917	624	aarF domain-containing kinase [Arabidops	0.975	0.711	0.637	1e-162
225469916	579	PREDICTED: uncharacterized aarF domain-c	0.852	0.670	0.737	1e-162
356554983	516	PREDICTED: probable serine/threonine-pro	0.738	0.651	0.815	1e-159
357475969	630	aarF domain-containing protein kinase, p	0.989	0.714	0.614	1e-156

>gi|224078834|ref|XP_002305646.1| predicted protein [Populus trichocarpa] gi|222848610|gb|EEE86157.1| predicted protein [Populus trichocarpa]

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/454 (69%), Positives = 367/454 (80%), Gaps = 8/454 (1%)

Query: 1   MSRVLTFRNIWRAAQSVLTNERGYHS---ELTKYGAVVAVGLRVPYYRFYSHYGFPSGGH 57
           + R LT  NI + A+ + + ++   +   E+ KYG VV+VGL +P +R+YS Y FPS G+
Sbjct: 6   VGRFLTIGNIKKVARLIFSKQKSSSNQLLEVKKYGTVVSVGLHLPQFRYYSQYSFPSRGY 65

Query: 58  CSVPVYNVKQLLCRSCSVRSLSVASASSVATHQAQIAWKRLFYYSSFRDQIFPCISRIAQ 117
            S  +YNVK+   R C     S  S S V T  AQ+AWKRL    S     FP ISRIAQ
Sbjct: 66  SSFALYNVKEQFGRRCFTSCYS--STSDVVTRNAQLAWKRLCRKGSANGWSFPRISRIAQ 123

Query: 118 AFSLALTRSPLLVPGIIAFTSGQLAWAQRVSAETEYFPSQNAFYTRAQDGHAFVTSVLYS 177
           A SLALTRS L+VP  +A T GQ+AWAQR   E++++P  N+ Y RAQDGHA+VT ++ +
Sbjct: 124 AVSLALTRSHLVVPSALALTCGQVAWAQRTLVESDFYP--NSLYMRAQDGHAYVTLLVSA 181

Query: 178 LVECVILLMRALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLRTLETAGPAFIKWGQW 237
           +V+  +LL+RA+YL +LFSPS+MMAPFADS GP+FR++WLHVV RTLE AGPAFIKWGQW
Sbjct: 182 VVDAFVLLVRAIYLAILFSPSMMMAPFADSCGPEFRKIWLHVVHRTLEKAGPAFIKWGQW 241

Query: 238 AATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSI 297
           AATRPDLFPRDLC KLSELHSKAPEHSFAYTKKTIERAFGR+LSEIF+ FEE PVASGSI
Sbjct: 242 AATRPDLFPRDLCTKLSELHSKAPEHSFAYTKKTIERAFGRKLSEIFEDFEEVPVASGSI 301

Query: 298 AQVHRASLRFRYPGQK-VKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLR 356
           AQVHRASLRFRYPG+K  KP +VAVKVRHPGVGESIRRDF+IINL AKIS+ IP + WLR
Sbjct: 302 AQVHRASLRFRYPGKKQTKPTIVAVKVRHPGVGESIRRDFMIINLVAKISTFIPTLNWLR 361

Query: 357 LDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQG 416
           LDES+QQF VFMMSQVDLAREAA LSRFIYNFRRWKDVSFPKPVYPLVHPAVLVE+YEQG
Sbjct: 362 LDESLQQFGVFMMSQVDLAREAAQLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVESYEQG 421

Query: 417 ECVSRYVDELQGHERLKSALAHIGTHALLKMLLV 450
           E VS YVD+L+GH R+KSALAHIGTHALLKMLLV
Sbjct: 422 ESVSHYVDDLEGHNRIKSALAHIGTHALLKMLLV 455

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549423|ref|XP_003543093.1| PREDICTED: uncharacterized aarF domain-containing protein kinase 2-like [Glycine max]

 Score =  632 bits (1629), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 320/447 (71%), Positives = 363/447 (81%), Gaps = 5/447 (1%)

Query: 7   FRNIWRAAQSVL-TNERGYHSELTKYGAVVAVGLRVPYYRFYSHYGFPSGGHCSVPVYNV 65
            RNI RAAQSV   N R  + E++K G VV+VG  + + R Y  Y FPS    S   +  
Sbjct: 2   LRNIRRAAQSVCRINSR--YLEVSKNGPVVSVGPNIHHCRLYMQYKFPSEACSSFLWHGT 59

Query: 66  KQLLCRSCSVRSLSVASASSVATHQAQIAWKRLF-YYSSFRDQIFP-CISRIAQAFSLAL 123
           ++   +  S R+ SV SAS+  TH +QIAWKRL+  Y S  D  FP  ++ IAQA SLAL
Sbjct: 60  REGFRKRGSFRNFSVTSASNTVTHHSQIAWKRLYRKYCSSGDGTFPPTVNMIAQAVSLAL 119

Query: 124 TRSPLLVPGIIAFTSGQLAWAQRVSAETEYFPSQNAFYTRAQDGHAFVTSVLYSLVECVI 183
            RS LLVPGI+AFT G+LA AQ+  A+ E +PSQN  Y RAQDG+ ++ +  + +VE +I
Sbjct: 120 ARSYLLVPGILAFTCGELALAQQNWADAERYPSQNGLYMRAQDGYNYMFTFAFIIVEGLI 179

Query: 184 LLMRALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLRTLETAGPAFIKWGQWAATRPD 243
           LLMRALYL +LFSPSI+MAPFAD FGP FR+LWLHVV RTLE +GPAFIKWGQWAATRPD
Sbjct: 180 LLMRALYLAILFSPSIVMAPFADCFGPNFRKLWLHVVHRTLEKSGPAFIKWGQWAATRPD 239

Query: 244 LFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRA 303
           LFPRDLC KLSELH+KAPEHSF YTKKTIERAFGR++SEIFD FEE PVASGSIAQVHRA
Sbjct: 240 LFPRDLCTKLSELHTKAPEHSFCYTKKTIERAFGRKISEIFDNFEELPVASGSIAQVHRA 299

Query: 304 SLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQ 363
           SL+ RYPGQ+ KP++VAVKVRHPGVGESIRRDF IINLAAKIS  IPA+ WLRLDESVQQ
Sbjct: 300 SLKCRYPGQQAKPLLVAVKVRHPGVGESIRRDFAIINLAAKISKFIPALNWLRLDESVQQ 359

Query: 364 FAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYV 423
           FAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYE+GE VS YV
Sbjct: 360 FAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEKGESVSYYV 419

Query: 424 DELQGHERLKSALAHIGTHALLKMLLV 450
           D+LQGHER+KSALAHIGTHALLKMLLV
Sbjct: 420 DDLQGHERVKSALAHIGTHALLKMLLV 446

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114105|ref|XP_002316668.1| predicted protein [Populus trichocarpa] gi|222859733|gb|EEE97280.1| predicted protein [Populus trichocarpa]

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 305/425 (71%), Positives = 350/425 (82%), Gaps = 5/425 (1%)

Query: 27  ELTKYGAVVAVGLRVPYYRFYSHYGFPSGGHCSVPVYNVKQLLCRSCSVRSLSVASASSV 86
           E+ ++G VV+V L +P +R YS Y FPS  + S  + N+K+   R C  R+ S  S    
Sbjct: 10  EVKEHGTVVSVCLHLPQFRNYSQYSFPSREYSSFALCNIKEQFGRRCFTRNYSFTS--DA 67

Query: 87  ATHQAQIAWKRLFYYSSFRDQIFPCISRIAQAFSLALTRSPLLVPGIIAFTSGQLAWAQR 146
            TH AQ+AWKRLF   S     FP ISRIAQA SLALTRS L+VP  +  T GQ+AWAQR
Sbjct: 68  VTHNAQLAWKRLFRKGSASGWSFPRISRIAQAVSLALTRSQLVVPSALVLTCGQVAWAQR 127

Query: 147 VSAETEYFPSQNAFYTRAQDGHAFVTSVLYSLVECVILLMRALYLGVLFSPSIMMAPFAD 206
              E +Y+P   + Y RAQDGHA+VTS++ ++VE  +LL+RA+YL +LFSPS++MAPFAD
Sbjct: 128 TLVEPDYYP--GSLYMRAQDGHAYVTSLVSAIVEAFVLLVRAIYLAILFSPSLLMAPFAD 185

Query: 207 SFGPQFRELWLHVVLRTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFA 266
           S GP+FR++WLHVV RTLE AGPAFIKWGQWAATRPDLFPRDLC KLSELHSKAPEHSFA
Sbjct: 186 SCGPEFRKMWLHVVHRTLEKAGPAFIKWGQWAATRPDLFPRDLCTKLSELHSKAPEHSFA 245

Query: 267 YTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQK-VKPIVVAVKVRH 325
           YTKKTIERAFGR+LSEIF+GFEE PVASGSIAQVHRASL+  YPG+K  KP VVAVKVRH
Sbjct: 246 YTKKTIERAFGRKLSEIFEGFEEVPVASGSIAQVHRASLKCHYPGKKQTKPTVVAVKVRH 305

Query: 326 PGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFI 385
           PGVGESIRRDF+IINL AKIS+ +PA+ WLRLDESVQQFAVFMMSQVDLAREAAHLSRFI
Sbjct: 306 PGVGESIRRDFMIINLVAKISTFLPALNWLRLDESVQQFAVFMMSQVDLAREAAHLSRFI 365

Query: 386 YNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALL 445
           YNFRRWKDVSFPKPVYPLVHPAVLVE+YEQGE VS YVD+L+GH  +K+ALAHIGTHALL
Sbjct: 366 YNFRRWKDVSFPKPVYPLVHPAVLVESYEQGESVSHYVDDLEGHNWIKTALAHIGTHALL 425

Query: 446 KMLLV 450
           KMLLV
Sbjct: 426 KMLLV 430

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524754|ref|XP_003530993.1| PREDICTED: probable serine/threonine-protein kinase abkC-like [Glycine max]

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 298/443 (67%), Positives = 354/443 (79%), Gaps = 1/443 (0%)

Query: 9   NIWRAAQSVLTNERGYHSELTKYGAVVAVGLRVPYYRFYSHYGFPSGGHCSVPVYNVKQL 68
           N+ + AQS+L   R  + E ++  A  +VG  +   R Y  Y FP  G  S   +  ++ 
Sbjct: 4   NVGKVAQSILRTHRRRYLEASRNEAFTSVGPNIKQCRMYMQYKFPIEGCNSFLWHWTREN 63

Query: 69  LCRSCSVRSLSVASASSVATHQAQIAWKRLFY-YSSFRDQIFPCISRIAQAFSLALTRSP 127
             + CS R+ SV SA +VA + ++IAWK L+  YSS     F  I+ IAQA SLALTRS 
Sbjct: 64  FHKGCSFRNFSVTSARNVAAYNSRIAWKLLYKKYSSNGYNGFTSINMIAQAVSLALTRSY 123

Query: 128 LLVPGIIAFTSGQLAWAQRVSAETEYFPSQNAFYTRAQDGHAFVTSVLYSLVECVILLMR 187
           LLVPG +AF SG+LA AQ+  A+TE++PSQNA Y  AQDG+ ++ + ++ +VE ++LL+R
Sbjct: 124 LLVPGFLAFASGKLALAQQNGADTEFYPSQNALYMHAQDGYGYMFAFVFIVVESLVLLVR 183

Query: 188 ALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLRTLETAGPAFIKWGQWAATRPDLFPR 247
           A+YL +LFSPSI+MAP AD FGP+FR++WL VV RTLE AGPAFIKWGQWAATRPDLFPR
Sbjct: 184 AIYLAILFSPSILMAPLADYFGPEFRKMWLSVVHRTLEKAGPAFIKWGQWAATRPDLFPR 243

Query: 248 DLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRF 307
           DLC KL+EL +KAP+HSF+YTKKTIERAFGR++SEIF+ FEE PVASGSIAQVHRASL++
Sbjct: 244 DLCTKLAELQTKAPQHSFSYTKKTIERAFGRKISEIFENFEEVPVASGSIAQVHRASLKY 303

Query: 308 RYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVF 367
           RYPGQ+ KP+VVAVKVRHPGVGESIRRDF IINL AK S  I A+ WLRLDESVQQFAVF
Sbjct: 304 RYPGQQAKPLVVAVKVRHPGVGESIRRDFAIINLVAKSSKFIHALNWLRLDESVQQFAVF 363

Query: 368 MMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQ 427
           MMSQVDLAREAAHLSRFIYNFRR +DVSFPKPVYPLVHPAVLVETYE GE VS YVDELQ
Sbjct: 364 MMSQVDLAREAAHLSRFIYNFRRSRDVSFPKPVYPLVHPAVLVETYENGESVSHYVDELQ 423

Query: 428 GHERLKSALAHIGTHALLKMLLV 450
           GHER+KSALAHIGT+ALLKMLLV
Sbjct: 424 GHERIKSALAHIGTNALLKMLLV 446

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517365|ref|XP_004165716.1| PREDICTED: probable serine/threonine-protein kinase abkC-like [Cucumis sativus]

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 295/442 (66%), Positives = 352/442 (79%), Gaps = 1/442 (0%)

Query: 9   NIWRAAQSVLTNERGYHSELTKYGAVVAVGLRVPYYRFYSHYGFPSGGHCSVPVYNVKQL 68
           NI +A +S+ TN R  H E+   G  V V   + + +  SHY F + GH   P+Y  K+ 
Sbjct: 4   NIRKAVRSLHTNHRFRHLEVRNIGTTVTVE-PLLHNKLLSHYRFLARGHGFSPLYCTKRN 62

Query: 69  LCRSCSVRSLSVASASSVATHQAQIAWKRLFYYSSFRDQIFPCISRIAQAFSLALTRSPL 128
           L  + + R+  + + S+V  HQAQ  WKR+    S      P ++ +A+AF LA++RS L
Sbjct: 63  LSLTRNSRNFCIWTTSNVVKHQAQFVWKRVCSKFSSNGYSIPTLNEVARAFCLAMSRSHL 122

Query: 129 LVPGIIAFTSGQLAWAQRVSAETEYFPSQNAFYTRAQDGHAFVTSVLYSLVECVILLMRA 188
           +VPGI AFT G+LA AQR     + +PS N+FY RAQDGHA++ S+L+S +E +ILL RA
Sbjct: 123 IVPGIFAFTCGELACAQRTLTNMDPYPSHNSFYIRAQDGHAYLISLLFSTLEGIILLFRA 182

Query: 189 LYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLRTLETAGPAFIKWGQWAATRPDLFPRD 248
           LYL +LFSPSI+MAPFAD FG +FR+LWL VV R+LE  GPAFIKWGQWAATRPDLFPRD
Sbjct: 183 LYLAILFSPSILMAPFADVFGLRFRKLWLQVVHRSLEKGGPAFIKWGQWAATRPDLFPRD 242

Query: 249 LCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFR 308
           LC +LS+LH+KAPEHSFAY++KTIERAFGR+LSEIF+ FEE PVASGSIAQVHRASL+FR
Sbjct: 243 LCIELSKLHTKAPEHSFAYSRKTIERAFGRKLSEIFENFEEEPVASGSIAQVHRASLKFR 302

Query: 309 YPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM 368
           YPGQ+++P+VVAVKVRHPGVGE IRRDF+II+  AKIS  IP + WLRLDESVQQFAVFM
Sbjct: 303 YPGQQMEPMVVAVKVRHPGVGELIRRDFIIIDFVAKISKFIPTLNWLRLDESVQQFAVFM 362

Query: 369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQG 428
           MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGE VS YVD L+G
Sbjct: 363 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGESVSHYVDGLEG 422

Query: 429 HERLKSALAHIGTHALLKMLLV 450
           +ERLKS+LAHIGTHALLKMLLV
Sbjct: 423 YERLKSSLAHIGTHALLKMLLV 444

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849522|ref|XP_002892642.1| ABC1 family protein [Arabidopsis lyrata subsp. lyrata] gi|297338484|gb|EFH68901.1| ABC1 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 291/452 (64%), Positives = 350/452 (77%), Gaps = 8/452 (1%)

Query: 1   MSRVLTFRNIWRAAQSVLTNERGYHSELTKYGAVVAVGLRVPYYRFYSHYG-FPSGGHCS 59
           MSR L  R + +  QS+L+N++   S+   Y       LR P +R YS  G  PS G+C 
Sbjct: 1   MSRFLISRIVGKQTQSLLSNQKERVSQWGSYRTAFTAALRSPQFRTYSSSGRVPSNGYCI 60

Query: 60  VPVYNVKQLLCRSCSVRSLSVASASSVATHQAQIAWKRLFYYSSFRDQIFPCISRIAQAF 119
           +   ++K         RS S   A +V +H AQ+AWKRL Y  S R      IS +AQAF
Sbjct: 61  LAFRDLKGSFLSKHLSRSYSTVPARNVVSHHAQVAWKRLHYKYSER------ISTMAQAF 114

Query: 120 SLALTRSPLLVPGIIAFTSGQLAWAQRV-SAETEYFPSQNAFYTRAQDGHAFVTSVLYSL 178
           SL+LTRS LL+PGI+A T GQ+AWAQR   +   ++ S  + YTRA++G  F++S+L+S+
Sbjct: 115 SLSLTRSHLLIPGIVALTCGQVAWAQRAPGSGINHYASDKSLYTRAKNGPIFLSSLLFSV 174

Query: 179 VECVILLMRALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLRTLETAGPAFIKWGQWA 238
           +E  IL+ RA Y+  LF+PSI+M    +S GP+FR++WL +V RTLE AGPAFIKWGQWA
Sbjct: 175 IEGFILIGRAFYIACLFTPSILMGLVVESCGPRFRKIWLQMVHRTLERAGPAFIKWGQWA 234

Query: 239 ATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIA 298
           ATRPDLFP+DLC +LS+LHS APEHSFAYTKKTIE+AFGR+LSEIF+ FEE PVASGSIA
Sbjct: 235 ATRPDLFPKDLCLQLSKLHSNAPEHSFAYTKKTIEKAFGRKLSEIFEEFEEVPVASGSIA 294

Query: 299 QVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLD 358
           QVHRASLRF+YPGQK K  +VAVKVRHPGVGESIRRDFVIINL AKIS++IPA+KWLRLD
Sbjct: 295 QVHRASLRFQYPGQKSKSSLVAVKVRHPGVGESIRRDFVIINLVAKISTLIPALKWLRLD 354

Query: 359 ESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGEC 418
           ESVQQF VFM+SQVDLAREA+HLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYE GE 
Sbjct: 355 ESVQQFGVFMLSQVDLAREASHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEHGES 414

Query: 419 VSRYVDELQGHERLKSALAHIGTHALLKMLLV 450
           V+RYVD ++GHE +K+ LAHIGTHALLKMLLV
Sbjct: 415 VARYVDGMEGHEWIKTRLAHIGTHALLKMLLV 446

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42561917|ref|NP_172606.3| aarF domain-containing kinase [Arabidopsis thaliana] gi|332190608|gb|AEE28729.1| aarF domain-containing kinase [Arabidopsis thaliana]

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 288/452 (63%), Positives = 351/452 (77%), Gaps = 8/452 (1%)

Query: 1   MSRVLTFRNIWRAAQSVLTNERGYHSELTKYGAVVAVGLRVPYYRFYSHYG-FPSGGHCS 59
           MSRVL  + + +  QS+++N++   S+   Y       LR P  R YS  G  PS  +C+
Sbjct: 1   MSRVLISKIVGKQTQSLVSNQKDRVSQWGSYRTAFTAALRSPQLRTYSSSGRIPSNVYCT 60

Query: 60  VPVYNVKQLLCRSCSVRSLSVASASSVATHQAQIAWKRLFYYSSFRDQIFPCISRIAQAF 119
               ++K     +   RS + A A +V +H AQIAW+RL Y  S R      IS IAQAF
Sbjct: 61  FAFRDLKGSFLSNHLSRSYTTAPARNVVSHHAQIAWRRLHYKYSER------ISTIAQAF 114

Query: 120 SLALTRSPLLVPGIIAFTSGQLAWAQRV-SAETEYFPSQNAFYTRAQDGHAFVTSVLYSL 178
           SL+LTRS LL+PGI+A T GQ+AWAQR   +   ++ S  + YTRA++G  F++S+L+S+
Sbjct: 115 SLSLTRSHLLIPGIVAVTCGQVAWAQRAPGSGINHYASDKSLYTRAKNGPIFLSSLLFSV 174

Query: 179 VECVILLMRALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLRTLETAGPAFIKWGQWA 238
           +E  IL+ RA Y+  LF+P+I+M    +S GP+FR++WL +V RTLE AGPAFIKWGQWA
Sbjct: 175 IEGFILIGRAFYIACLFTPTILMGLVVESCGPRFRKIWLEMVHRTLERAGPAFIKWGQWA 234

Query: 239 ATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIA 298
           ATRPDLFP+DLC +LS+LHS APEHSFAYTKKTIE+AFGR+LSEIF+ F+E PVASGSIA
Sbjct: 235 ATRPDLFPKDLCSQLSKLHSNAPEHSFAYTKKTIEKAFGRKLSEIFEEFDEVPVASGSIA 294

Query: 299 QVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLD 358
           QVHRASLRF+YPGQK K  +VAVKVRHPGVGESIRRDFVIINL AKIS++IPA+KWLRLD
Sbjct: 295 QVHRASLRFQYPGQKSKSSLVAVKVRHPGVGESIRRDFVIINLVAKISTLIPALKWLRLD 354

Query: 359 ESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGEC 418
           ESVQQF VFM+SQVDLAREA+HLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYE GE 
Sbjct: 355 ESVQQFGVFMLSQVDLAREASHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEHGES 414

Query: 419 VSRYVDELQGHERLKSALAHIGTHALLKMLLV 450
           V+RYVD ++GHE +K+ LAHIGTHALLKMLLV
Sbjct: 415 VARYVDGMEGHEWIKTRLAHIGTHALLKMLLV 446

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225469916|ref|XP_002269141.1| PREDICTED: uncharacterized aarF domain-containing protein kinase 2-like [Vitis vinifera]

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 286/388 (73%), Positives = 332/388 (85%)

Query: 63  YNVKQLLCRSCSVRSLSVASASSVATHQAQIAWKRLFYYSSFRDQIFPCISRIAQAFSLA 122
           +  +  +C+    ++ S  SAS+VATH AQ+AW+RL+   S   + FP + RIAQA SLA
Sbjct: 12  FGTRNSICKHGYSKNFSAVSASNVATHHAQVAWRRLYEIFSCNGKTFPPLGRIAQAVSLA 71

Query: 123 LTRSPLLVPGIIAFTSGQLAWAQRVSAETEYFPSQNAFYTRAQDGHAFVTSVLYSLVECV 182
           L+RS L+VPG+ AFT G+LA AQR    T+++PS+N  Y RAQDGHA+VTS+L+S+ E V
Sbjct: 72  LSRSHLVVPGMFAFTFGELALAQRPLEYTDHYPSRNTLYMRAQDGHAYVTSLLFSVFEGV 131

Query: 183 ILLMRALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLRTLETAGPAFIKWGQWAATRP 242
           +L +RALYL +LFSP I+MAPFADSFG +FR LWL VV  TLE AGPAFIKWGQWAATRP
Sbjct: 132 VLFLRALYLAILFSPCIVMAPFADSFGHRFRNLWLQVVHGTLEKAGPAFIKWGQWAATRP 191

Query: 243 DLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHR 302
           DLF RD+C KL+ELH+KAPEHSFAYTKKTIE+AFGR LSEIF+ FEE PVASGSIAQVHR
Sbjct: 192 DLFARDICTKLAELHTKAPEHSFAYTKKTIEKAFGRNLSEIFEDFEELPVASGSIAQVHR 251

Query: 303 ASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQ 362
           ASL+FRYPGQ+VKP+VVAVKVRHPGVGESIRRDF+IINL AKIS+ IP ++WLRLDESVQ
Sbjct: 252 ASLKFRYPGQQVKPVVVAVKVRHPGVGESIRRDFLIINLVAKISNFIPTLRWLRLDESVQ 311

Query: 363 QFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRY 422
           QFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVE+YE GE VS Y
Sbjct: 312 QFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVESYEHGESVSHY 371

Query: 423 VDELQGHERLKSALAHIGTHALLKMLLV 450
           VD+L+G +R+KSALAHIGTHALLKMLLV
Sbjct: 372 VDDLEGQKRIKSALAHIGTHALLKMLLV 399

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554983|ref|XP_003545820.1| PREDICTED: probable serine/threonine-protein kinase abkC-like [Glycine max]

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 274/336 (81%), Positives = 301/336 (89%)

Query: 115 IAQAFSLALTRSPLLVPGIIAFTSGQLAWAQRVSAETEYFPSQNAFYTRAQDGHAFVTSV 174
           IAQA SLAL RS  LVPGI+AFT G+LA AQR  AE E +PSQN  Y RAQDG+ ++ + 
Sbjct: 2   IAQAVSLALARSYFLVPGILAFTWGELALAQRNWAEAERYPSQNGLYMRAQDGYNYMFTF 61

Query: 175 LYSLVECVILLMRALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLRTLETAGPAFIKW 234
            + +VE +ILLMRALYL +LFSPSI+MAPFAD FGP FR+LWL+VV RTLE +GPAFIKW
Sbjct: 62  TFIIVEGLILLMRALYLAILFSPSIVMAPFADCFGPNFRKLWLNVVHRTLEKSGPAFIKW 121

Query: 235 GQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVAS 294
           GQWAATRPDLFPRDLC KLSELH+KAPEHSF+YTKKTIERAFGR++SEIFD FEE PVAS
Sbjct: 122 GQWAATRPDLFPRDLCTKLSELHTKAPEHSFSYTKKTIERAFGRKISEIFDNFEELPVAS 181

Query: 295 GSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKW 354
           GSIAQVHRASL+ RYPGQ+ KP++VAVKVRHPGVGESIRRDF IINLAAKIS  IPA+ W
Sbjct: 182 GSIAQVHRASLKCRYPGQQAKPLLVAVKVRHPGVGESIRRDFAIINLAAKISKFIPALNW 241

Query: 355 LRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYE 414
           LRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYE
Sbjct: 242 LRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYE 301

Query: 415 QGECVSRYVDELQGHERLKSALAHIGTHALLKMLLV 450
           +GE VS YVD+LQGHER+KSALAHIGTHALLKMLLV
Sbjct: 302 KGESVSYYVDDLQGHERVKSALAHIGTHALLKMLLV 337

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475969|ref|XP_003608270.1| aarF domain-containing protein kinase, putative [Medicago truncatula] gi|87240485|gb|ABD32343.1| Protein kinase-like [Medicago truncatula] gi|355509325|gb|AES90467.1| aarF domain-containing protein kinase, putative [Medicago truncatula]

 Score =  559 bits (1441), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 277/451 (61%), Positives = 342/451 (75%), Gaps = 1/451 (0%)

Query: 1   MSRVLTFRNIWRAAQSVLTNERGYHSELTKYGAVVAVGLRVPYYRFYSHYGFPSGGHCSV 60
           M +     +I RAA+S+L   +  +  +++   +++V   +   R Y  Y FP+ G  S+
Sbjct: 1   MDKFFMLGHIGRAAESILRIHKSRYLGVSRNAGLLSVAPNINRCRTYMQYKFPNEGCSSI 60

Query: 61  PVYNVKQLLCRSCSVRSLSVASASSVATHQAQIAWKRL-FYYSSFRDQIFPCISRIAQAF 119
                ++   + CS  + +  SA ++  H+++IAWK L   Y S        +  IAQA 
Sbjct: 61  MWRGARENFHKGCSFWNFTAFSAKNITAHKSRIAWKLLRKIYPSNGYSGSTSVHMIAQAV 120

Query: 120 SLALTRSPLLVPGIIAFTSGQLAWAQRVSAETEYFPSQNAFYTRAQDGHAFVTSVLYSLV 179
           SLAL RS  LVP I AF  G+LA AQ+  ++   +PS NA    AQDG++++ +  + +V
Sbjct: 121 SLALARSCFLVPSIFAFACGELALAQQNQSDAGSYPSPNALCMSAQDGYSYMFAFAFVVV 180

Query: 180 ECVILLMRALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLRTLETAGPAFIKWGQWAA 239
           E ++LL RA+YL +LFSPSI+MAP AD FGP+FR++WL VV RTLE AGPAFIKWGQWAA
Sbjct: 181 EGLVLLGRAIYLAILFSPSILMAPLADYFGPEFRKMWLRVVHRTLERAGPAFIKWGQWAA 240

Query: 240 TRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQ 299
           TRPDLFP+D+C KL+ELHSKAPEHSF+YTKKTIE AFGR++SEIF+ FEE PVASGSIAQ
Sbjct: 241 TRPDLFPQDICTKLAELHSKAPEHSFSYTKKTIESAFGRKISEIFENFEELPVASGSIAQ 300

Query: 300 VHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDE 359
           VHRASL++RYPGQ+ KP++VAVKVRHPGVGESIRRDF IIN  AK S  IPA+ WLRLDE
Sbjct: 301 VHRASLKYRYPGQQAKPMLVAVKVRHPGVGESIRRDFAIINFVAKSSKFIPALNWLRLDE 360

Query: 360 SVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECV 419
           SVQQFAVFMMSQVDLAREAAHL+RFIYNFR+W+DVSFPKPVYPLVHPAVLVETYE GE V
Sbjct: 361 SVQQFAVFMMSQVDLAREAAHLNRFIYNFRQWRDVSFPKPVYPLVHPAVLVETYENGESV 420

Query: 420 SRYVDELQGHERLKSALAHIGTHALLKMLLV 450
           S YVDELQGHE +KSALAHIG++ALLKMLLV
Sbjct: 421 SHYVDELQGHEGIKSALAHIGSNALLKMLLV 451

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	455
TAIR|locus:2200096	624	AT1G11390 [Arabidopsis thalian	0.975	0.711	0.626	9.3e-146
TAIR|locus:2200903	621	AT1G61640 [Arabidopsis thalian	0.903	0.661	0.552	2.8e-114
DICTYBASE|DDB_G0267774	689	abkC "ABC1 family protein kina	0.569	0.375	0.428	2.4e-51
UNIPROTKB|C9JE15	590	ADCK2 "Uncharacterized aarF do	0.338	0.261	0.403	5.6e-41
UNIPROTKB|Q7Z695	626	ADCK2 "Uncharacterized aarF do	0.338	0.246	0.403	7.5e-41
RGD|1311058	616	Adck2 "aarF domain containing	0.307	0.227	0.395	8.9e-39
UNIPROTKB|E2RRE7	627	ADCK2 "Uncharacterized protein	0.331	0.240	0.383	3.8e-38
UNIPROTKB|F1P1M5	544	ADCK2 "Uncharacterized protein	0.287	0.240	0.439	7.8e-38
MGI|MGI:1889336	617	Adck2 "aarF domain containing	0.292	0.215	0.402	3.9e-37
UNIPROTKB|E1BNG1	625	ADCK2 "Uncharacterized protein	0.290	0.211	0.392	5.5e-37

TAIR|locus:2200096 AT1G11390 [Arabidopsis thaliana (taxid:3702)]

 Score = 1424 (506.3 bits), Expect = 9.3e-146, P = 9.3e-146
 Identities = 283/452 (62%), Positives = 342/452 (75%)

Query:     1 MSRVLTFRNIWRAAQSVLTNERGYHSELTKYGAVVAVGLRVPYYRFYSHYG-FPSGGHCS 59
             MSRVL  + + +  QS+++N++   S+   Y       LR P  R YS  G  PS  +C+
Sbjct:     1 MSRVLISKIVGKQTQSLVSNQKDRVSQWGSYRTAFTAALRSPQLRTYSSSGRIPSNVYCT 60

Query:    60 VPVYNVKQXXXXXXXXXXXXXXXXXXXXTHQAQIAWKRLFYYSSFRDQIFPCISRIAQAF 119
                 ++K                     +H AQIAW+RL Y  S R      IS IAQAF
Sbjct:    61 FAFRDLKGSFLSNHLSRSYTTAPARNVVSHHAQIAWRRLHYKYSER------ISTIAQAF 114

Query:   120 SLALTRSPLLVPGIIAFTSGQLAWAQRVSAE-TEYFPSQNAFYTRAQDGHAFVTSVLYSL 178
             SL+LTRS LL+PGI+A T GQ+AWAQR       ++ S  + YTRA++G  F++S+L+S+
Sbjct:   115 SLSLTRSHLLIPGIVAVTCGQVAWAQRAPGSGINHYASDKSLYTRAKNGPIFLSSLLFSV 174

Query:   179 VECVILLMRALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLRTLETAGPAFIKWGQWA 238
             +E  IL+ RA Y+  LF+P+I+M    +S GP+FR++WL +V RTLE AGPAFIKWGQWA
Sbjct:   175 IEGFILIGRAFYIACLFTPTILMGLVVESCGPRFRKIWLEMVHRTLERAGPAFIKWGQWA 234

Query:   239 ATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIA 298
             ATRPDLFP+DLC +LS+LHS APEHSFAYTKKTIE+AFGR+LSEIF+ F+E PVASGSIA
Sbjct:   235 ATRPDLFPKDLCSQLSKLHSNAPEHSFAYTKKTIEKAFGRKLSEIFEEFDEVPVASGSIA 294

Query:   299 QVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLD 358
             QVHRASLRF+YPGQK K  +VAVKVRHPGVGESIRRDFVIINL AKIS++IPA+KWLRLD
Sbjct:   295 QVHRASLRFQYPGQKSKSSLVAVKVRHPGVGESIRRDFVIINLVAKISTLIPALKWLRLD 354

Query:   359 ESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGEC 418
             ESVQQF VFM+SQVDLAREA+HLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYE GE 
Sbjct:   355 ESVQQFGVFMLSQVDLAREASHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEHGES 414

Query:   419 VSRYVDELQGHERLKSALAHIGTHALLKMLLV 450
             V+RYVD ++GHE +K+ LAHIGTHALLKMLLV
Sbjct:   415 VARYVDGMEGHEWIKTRLAHIGTHALLKMLLV 446

GO:0005886 "plasma membrane" evidence=ISM

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2200903 AT1G61640 [Arabidopsis thaliana (taxid:3702)]

 Score = 1127 (401.8 bits), Expect = 2.8e-114, P = 2.8e-114
 Identities = 233/422 (55%), Positives = 305/422 (72%)

Query:    35 VAVGLRVPYYRFYSHYGFPSGGHCSVPVYNVKQXXXXXXXXXXXXXXXXXXXXTH----Q 90
             + V +++P +R  S+     G H    ++NVK                     ++     
Sbjct:    27 INVSVKLPQFRIQSN-----GYHTLGLLHNVKGRFLGSNHHQLARRSYSIAVASNVVKQH 81

Query:    91 AQIAWKRLFYYSSF-RDQIFPCISRIAQAFSLALTRSPLLVPGIIAFTSGQLAWAQRVSA 149
             AQ++W RL    +  R    P IS+IAQA SL+L RS  L+PG++A T  Q+A+AQRV  
Sbjct:    82 AQVSWGRLVQRVTLSRSWNLPRISQIAQACSLSLARSHFLLPGLLALTYRQVAYAQRVVP 141

Query:   150 E-TEYFPSQNAFYTRAQDGHAFVTSVLYSLVECVILLMRALYLGVLFSPSIMMAPFADSF 208
                 Y PS  + Y  + +    ++S+++S V+ V+L+ RALYL +LFSP+++MA    + 
Sbjct:   142 NPVVYSPSHISPYRSSINFPIVLSSLVFSAVKGVVLIGRALYLAILFSPNVIMALLGFAC 201

Query:   209 GPQFRELWLHVVLRTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYT 268
             GP++R+L   V+ RTLE AGPAFIK+GQW ATRPD F +DLC +LS+LHS APEHSFA+T
Sbjct:   202 GPRYRQLQYEVLHRTLEKAGPAFIKFGQWIATRPDRFNKDLCLQLSKLHSNAPEHSFAFT 261

Query:   269 KKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV 328
             KK+IE AFGR+LSEIF+ F+EAPVASGSIAQVHRASL+F+Y GQKVK   VAVKVRHP V
Sbjct:   262 KKSIENAFGRKLSEIFEEFDEAPVASGSIAQVHRASLKFQYAGQKVKSSEVAVKVRHPCV 321

Query:   329 GESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNF 388
              E+++RDFVIIN  A++++ IP + WLRLDE VQQF+V+M+SQVDL+REA+HLSRFIYNF
Sbjct:   322 EETMKRDFVIINFVARLTTFIPGLNWLRLDECVQQFSVYMLSQVDLSREASHLSRFIYNF 381

Query:   389 RRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKML 448
             R WKDVSFPKP+YPL+HPAVLVETYE GE V+RYVD  +G E+LK+ +AHIGT+ALLKML
Sbjct:   382 RGWKDVSFPKPIYPLIHPAVLVETYEHGESVARYVDGSEGQEKLKAKVAHIGTNALLKML 441

Query:   449 LV 450
             LV
Sbjct:   442 LV 443

GO:0005886 "plasma membrane" evidence=ISM

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

DICTYBASE|DDB_G0267774 abkC "ABC1 family protein kinase AbkC" [Dictyostelium discoideum (taxid:44689)]

 Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
 Identities = 117/273 (42%), Positives = 168/273 (61%)

Query:   179 VECVILLMRALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLRTLETAGPAFIKWGQWA 238
             +  V + +R L LG++  PS++  P    F P  +ELW  ++L T++ +G  +IK+GQW 
Sbjct:   151 INLVKIGIRVLELGLILLPSVLTFPCC--FIPGVKELWWQLLLETIQFSGTCWIKFGQWI 208

Query:   239 ATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAF-GRRLSEIFDGFEEAPVASGSI 297
             +TRPDLFP  L +K S+LHS+ P HSF +T ++IE +F G+ + ++F  F+E P+ASGS+
Sbjct:   209 STRPDLFPDLLIEKFSQLHSQCPSHSFQFTNESIENSFNGKSIKDLFLWFDEEPMASGSV 268

Query:   298 AQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRL 357
             AQVH+A       G+     V  VKV HP V  +I+RDF II       S IP +KWL L
Sbjct:   269 AQVHKA---LTMDGK-----VAVVKVLHPNVKSNIKRDFFIIYSLIWAFSHIPEMKWLSL 320

Query:   358 DESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGE 417
              ES+ +F   MM Q DL  EA+HL+RF  NF+   +V FPKP+YPLV   VLVE++E G 
Sbjct:   321 PESILEFGKSMMKQADLELEASHLNRFNSNFKYNSEVIFPKPLYPLVSKEVLVESFEPGS 380

Query:   418 CVSRYVDELQGHERLKSALAHIGTHALLKMLLV 450
              +  ++ +   H      LA IG  A ++M+LV
Sbjct:   381 PIMDFIKKNDHHN---PTLAKIGLSAYMQMMLV 410

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0004672 "protein kinase activity" evidence=ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|C9JE15 ADCK2 "Uncharacterized aarF domain-containing protein kinase 2" [Homo sapiens (taxid:9606)]

 Score = 270 (100.1 bits), Expect = 5.6e-41, Sum P(2) = 5.6e-41
 Identities = 63/156 (40%), Positives = 88/156 (56%)

Query:   295 GSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKW 354
             GS A V RA +    P +    I VAVKV HPG+   +  D +++ + +++  V+P +KW
Sbjct:   285 GSNAGVSRAQVPGHQP-EATNLISVAVKVLHPGLLAQVHMDLLLMKIGSRVLGVLPGIKW 343

Query:   355 LRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYE 414
             L L E V++F   M+ Q+DL  EA +L  F  NFR  K V FP P+ P V   VLVETYE
Sbjct:   344 LSLPEIVEEFEKLMVQQIDLRYEAQNLEHFQVNFRNVKAVKFPTPLRPFVTREVLVETYE 403

Query:   415 QGECVSRYVDELQGHERLKSALAHIGTHALLKMLLV 450
             +   VS Y  +      LK  +A +G + LLKM+ V
Sbjct:   404 ESVPVSSY-QQAGIPVDLKRKIARLGINMLLKMIFV 438

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q7Z695 ADCK2 "Uncharacterized aarF domain-containing protein kinase 2" [Homo sapiens (taxid:9606)]

 Score = 270 (100.1 bits), Expect = 7.5e-41, Sum P(2) = 7.5e-41
 Identities = 63/156 (40%), Positives = 88/156 (56%)

Query:   295 GSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKW 354
             GS A V RA +    P +    I VAVKV HPG+   +  D +++ + +++  V+P +KW
Sbjct:   285 GSNAGVSRAQVPGHQP-EATNLISVAVKVLHPGLLAQVHMDLLLMKIGSRVLGVLPGIKW 343

Query:   355 LRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYE 414
             L L E V++F   M+ Q+DL  EA +L  F  NFR  K V FP P+ P V   VLVETYE
Sbjct:   344 LSLPEIVEEFEKLMVQQIDLRYEAQNLEHFQVNFRNVKAVKFPTPLRPFVTREVLVETYE 403

Query:   415 QGECVSRYVDELQGHERLKSALAHIGTHALLKMLLV 450
             +   VS Y  +      LK  +A +G + LLKM+ V
Sbjct:   404 ESVPVSSY-QQAGIPVDLKRKIARLGINMLLKMIFV 438

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

RGD|1311058 Adck2 "aarF domain containing kinase 2" [Rattus norvegicus (taxid:10116)]

 Score = 253 (94.1 bits), Expect = 8.9e-39, Sum P(2) = 8.9e-39
 Identities = 57/144 (39%), Positives = 82/144 (56%)

Query:   310 PGQKVKP---IVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAV 366
             PGQ  K    I VAVKV HPG+   +  D +++ + ++   +IP VKWL L E V++F  
Sbjct:   286 PGQPPKSDHLIPVAVKVLHPGLLSQVYIDLLLMKIGSQALGLIPGVKWLSLPEIVEEFEK 345

Query:   367 FMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDEL 426
              M+ Q DL  EA +L  F +NF+    V FP P++PL+   +LVETYE+   VS Y  + 
Sbjct:   346 LMVQQTDLRYEAQNLEHFQHNFQNMASVKFPTPLHPLITRDILVETYEESVPVSSY-QQA 404

Query:   427 QGHERLKSALAHIGTHALLKMLLV 450
                  LK  +A +G + L KM+ V
Sbjct:   405 GVPTDLKRKIAQLGINMLFKMIFV 428

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0016301 "kinase activity" evidence=IEA

UNIPROTKB|E2RRE7 ADCK2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 255 (94.8 bits), Expect = 3.8e-38, Sum P(2) = 3.8e-38
 Identities = 61/159 (38%), Positives = 91/159 (57%)

Query:   295 GSIAQVHRASLRFRYPGQKVKP---IVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPA 351
             GS A + +AS+    P  + KP   I VAVKV HPG+   ++ D +++ + +++ +++P 
Sbjct:   286 GSNAVMSQASV----PADQPKPDHLIPVAVKVLHPGLLSQVQMDLLLMKMGSRVLALLPG 341

Query:   352 VKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVE 411
             +KWL L E V++F   M+ Q+DL  EA +L  F  NF     V FP P+ P V   VLVE
Sbjct:   342 IKWLSLPEIVEEFEKLMVHQIDLRYEARNLEHFQCNFLNVNSVKFPTPLRPFVTRDVLVE 401

Query:   412 TYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLV 450
             TYE+   VS Y  +      LK  +A +G + LLKM+ V
Sbjct:   402 TYEESVPVSSY-QQAGIPVDLKKKIARLGINMLLKMIFV 439

GO:0005739 "mitochondrion" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

UNIPROTKB|F1P1M5 ADCK2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 261 (96.9 bits), Expect = 7.8e-38, Sum P(2) = 7.8e-38
 Identities = 58/132 (43%), Positives = 79/132 (59%)

Query:   319 VAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREA 378
             VAVKV HPG+   ++ D  ++ L + I  ++P  KWL L E V++F   M+ Q+DL  EA
Sbjct:   225 VAVKVLHPGLVHQVQMDLFLMKLGSHIIGLLPGFKWLSLTEIVEEFEKLMLQQIDLHYEA 284

Query:   379 AHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAH 438
              +L RF  NF     V FP PV+PLV   VLVET+E+ E +SRY+      E L+  LA 
Sbjct:   285 RNLERFRQNFLDVDFVKFPTPVHPLVTTDVLVETFEESEPISRYLHTEVATE-LRQRLAK 343

Query:   439 IGTHALLKMLLV 450
             +G   LLKM+ V
Sbjct:   344 MGMDMLLKMVFV 355

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:1889336 Adck2 "aarF domain containing kinase 2" [Mus musculus (taxid:10090)]

 Score = 249 (92.7 bits), Expect = 3.9e-37, Sum P(2) = 3.9e-37
 Identities = 54/134 (40%), Positives = 78/134 (58%)

Query:   317 IVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAR 376
             I VAVKV HPG+   +  D +++ + +K   ++P VKWL L E V++F   M+ Q DL  
Sbjct:   297 IPVAVKVLHPGLLSQVSMDLLLMKIGSKALGLLPGVKWLSLPEIVEEFEKLMVQQTDLRY 356

Query:   377 EAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSAL 436
             EA +L  F +NF+    V FP P+ PL+   +LVETYE+   VS Y  +      LK  +
Sbjct:   357 EAQNLEHFQHNFQDMASVKFPTPLRPLITRDILVETYEESVPVSSY-QQAGIPTDLKRKI 415

Query:   437 AHIGTHALLKMLLV 450
             A +G + LLKM+ V
Sbjct:   416 AQLGINMLLKMIFV 429

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

UNIPROTKB|E1BNG1 ADCK2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 241 (89.9 bits), Expect = 5.5e-37, Sum P(2) = 5.5e-37
 Identities = 53/135 (39%), Positives = 80/135 (59%)

Query:   317 IVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAR 376
             + VAVKV HPG+   ++ D +++ + +++ +V+P +KWL L E V++F   M+ Q+DL  
Sbjct:   305 VPVAVKVLHPGLLAQVQMDLLLMKMGSRVLTVLPGIKWLSLPEIVEEFEKLMVQQIDLRY 364

Query:   377 EAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHER-LKSA 435
             EA +L  F  NF     V FP P+ P V   VLVETYE+   VS Y  +  G    +K  
Sbjct:   365 EARNLELFQCNFLNVNSVKFPTPLRPFVTKDVLVETYEESVPVSSY--QHAGIPLDVKRK 422

Query:   436 LAHIGTHALLKMLLV 450
             +A +G + LLKM+ V
Sbjct:   423 IARLGINMLLKMIFV 437

GO:0005739 "mitochondrion" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_IV0208	hypothetical protein (635 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00031466	hypothetical protein (142 aa)			•						0.490

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	455
COG0661	517	COG0661, AarF, Predicted unusual protein kinase [G	3e-51
TIGR01982	437	TIGR01982, UbiB, 2-polyprenylphenol 6-hydroxylase	2e-42
pfam03109	117	pfam03109, ABC1, ABC1 family	5e-31
PRK04750	537	PRK04750, ubiB, putative ubiquinone biosynthesis p	1e-29

>gnl|CDD|223733 COG0661, AarF, Predicted unusual protein kinase [General function prediction only]

 Score =  180 bits (459), Expect = 3e-51
 Identities = 81/230 (35%), Positives = 117/230 (50%), Gaps = 10/230 (4%)

Query: 222 RTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLS 281
             LE  GP FIK GQ  +TRPDL P +  ++L++L  + P   F   ++ IE   GR + 
Sbjct: 63  LALEELGPTFIKLGQILSTRPDLVPPEYAEELAKLQDRVPPFPFEEAERIIEEELGRPIE 122

Query: 282 EIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINL 341
           E+F  FE  P+AS SIAQVHRA L+    G++     VAVKV+ PG+ E I  D  ++  
Sbjct: 123 ELFSEFEPEPIASASIAQVHRAVLK---SGEE-----VAVKVQRPGIRERIEADLKLLRR 174

Query: 342 AAKISSVIPAVKW-LRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPV 400
            A++   +P     L L E V +F   +  ++D  REAA+  RF  NF+   DV  PK  
Sbjct: 175 LARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYRREAANAERFRENFKDDPDVYVPKVY 234

Query: 401 YPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLV 450
           +      VL   +  G  +S  +  L+     +  LA +   A L+ LL 
Sbjct: 235 WEYTTRRVLTMEWIDGIKISD-IAALKSAGIDRKELAELLVRAFLRQLLR 283

Length = 517

>gnl|CDD|233667 TIGR01982, UbiB, 2-polyprenylphenol 6-hydroxylase

 Score =  155 bits (393), Expect = 2e-42
 Identities = 84/240 (35%), Positives = 116/240 (48%), Gaps = 17/240 (7%)

Query: 178 LVECVILLMRALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLRTLETAGPAFIKWGQW 237
           LVE  I  +    L  L  P         S G + R          LE  GP FIK+GQ 
Sbjct: 19  LVESPIGPLSLRLLRRLLLPFSNRENRLMSRGERLR--------LALEELGPTFIKFGQT 70

Query: 238 AATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSI 297
            +TR DL P D+ ++LS L  + P   F   +K IE A G  L E+F  FEE P+A+ SI
Sbjct: 71  LSTRADLLPADIAEELSLLQDRVPPFDFKVARKVIEAALGGPLEELFAEFEEKPLAAASI 130

Query: 298 AQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII-NLAAKISSVIPAVKWLR 356
           AQVHRA L     G++     VAVKV  PG+ ++I  D  ++  LA  +  + P  + LR
Sbjct: 131 AQVHRARL---VDGKE-----VAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLR 182

Query: 357 LDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQG 416
             E V++F   +  ++DL REAA+ S    NF+    V  P+  +      VL   +  G
Sbjct: 183 PTEVVKEFEKTLRRELDLRREAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDG 242

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol -> 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 437

>gnl|CDD|111949 pfam03109, ABC1, ABC1 family

 Score =  115 bits (290), Expect = 5e-31
 Identities = 48/127 (37%), Positives = 66/127 (51%), Gaps = 11/127 (8%)

Query: 275 AFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRR 334
             G  + E+F  F+E P+A+ SIAQVHRA L+    G++     VAVKV+ PGV + IR 
Sbjct: 2   ELGAPVEEVFAEFDEEPIAAASIAQVHRAVLKD---GEE-----VAVKVQRPGVKKRIRS 53

Query: 335 DFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDV 394
           D  ++   AKI           LD  V +F   +  ++D  REAA+  +F  NF     V
Sbjct: 54  DLKLLKFLAKILKKFF--PGFDLDWLVDEFRKSLPQELDFLREAANAEKFRENFADLPWV 111

Query: 395 SFPKPVY 401
             PK VY
Sbjct: 112 YVPK-VY 117

This family includes ABC1 from yeast and AarF from E. coli. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex and E. coli AarF is required for ubiquinone production. It has been suggested that members of the ABC1 family are novel chaperonins. These proteins are unrelated to the ABC transporter proteins. Length = 117

>gnl|CDD|235310 PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed

 Score =  120 bits (304), Expect = 1e-29
 Identities = 65/188 (34%), Positives = 98/188 (52%), Gaps = 8/188 (4%)

Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
           LE  GP F+K+GQ  +TR DLFP D+  +L+ L  + P    A  +  IE+A G  + E 
Sbjct: 59  LEELGPIFVKFGQMLSTRRDLFPPDIADELALLQDRVPPFDGALARAIIEKALGGPVEEW 118

Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIIN-LA 342
           FD F+  P+AS SIAQVH A L+    G++     V VKV  P +   I  D  ++  LA
Sbjct: 119 FDDFDIKPLASASIAQVHFARLKDN--GRE-----VVVKVLRPDILPVIDADLALMYRLA 171

Query: 343 AKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP 402
             +  ++P  + L+  E V +F   +  ++DL REAA+ S+   NF     +  P+  + 
Sbjct: 172 RWVERLLPDGRRLKPREVVAEFEKTLHDELDLMREAANASQLRRNFEDSDMLYVPEVYWD 231

Query: 403 LVHPAVLV 410
                V+V
Sbjct: 232 YCSETVMV 239

Length = 537

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	455
COG0661	517	AarF Predicted unusual protein kinase [General fun	100.0
KOG1235	538	consensus Predicted unusual protein kinase [Genera	100.0
KOG1236	565	consensus Predicted unusual protein kinase [Genera	100.0
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	100.0
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	100.0
PF03109	119	ABC1: ABC1 family; InterPro: IPR004147 This entry	100.0
KOG1234	363	consensus ABC (ATP binding cassette) 1 protein [Ge	99.98
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.01
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	98.77
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	98.39
smart00090	237	RIO RIO-like kinase.	98.24
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.08
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	97.91
PRK14879	211	serine/threonine protein kinase; Provisional	97.9
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	97.69
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	97.65
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	97.31
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	97.25
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	97.2
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	97.09
PRK10593	297	hypothetical protein; Provisional	97.04
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	96.69
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	96.52
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	96.42
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	96.35
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	96.23
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	96.22
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	95.99
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	95.94
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	95.88
KOG0595	429	consensus Serine/threonine-protein kinase involved	95.69
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	95.68
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	95.6
COG0478	304	RIO-like serine/threonine protein kinase fused to	95.56
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	95.56
PRK09605	535	bifunctional UGMP family protein/serine/threonine	95.53
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	95.45
KOG0192	362	consensus Tyrosine kinase specific for activated (	95.37
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	95.35
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	95.32
PLN00034	353	mitogen-activated protein kinase kinase; Provision	95.3
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	95.23
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	95.23
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	95.17
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	95.15
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	95.1
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	94.98
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	94.96
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	94.93
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	94.87
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	94.86
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	94.81
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	94.79
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	94.76
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	94.59
PRK09550	401	mtnK methylthioribose kinase; Reviewed	94.56
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	94.29
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	94.25
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	94.25
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	94.23
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	94.23
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	94.22
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	94.17
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	94.15
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	94.13
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	94.08
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	94.02
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	94.0
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	93.99
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	93.94
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	93.86
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	93.82
PRK09188	365	serine/threonine protein kinase; Provisional	93.69
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	93.69
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	93.53
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	93.52
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	93.48
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	93.47
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	93.44
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	93.41
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	93.39
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	93.39
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	93.33
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	93.29
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	93.25
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	93.14
PTZ00263	329	protein kinase A catalytic subunit; Provisional	93.14
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	93.13
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	93.12
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	93.08
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	93.07
PLN02756	418	S-methyl-5-thioribose kinase	93.04
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	93.03
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	93.01
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	93.01
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	92.96
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	92.9
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	92.8
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	92.76
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	92.75
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	92.73
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	92.72
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	92.48
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	92.4
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	92.38
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	92.34
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	92.27
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	92.22
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	92.22
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	92.2
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	92.18
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	92.14
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	92.13
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	92.05
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	92.04
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	92.03
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	92.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	91.99
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	91.95
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	91.92
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	91.89
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	91.88
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	91.8
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	91.72
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	91.71
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	91.62
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	91.61
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	91.61
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	91.59
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	91.54
KOG0583	370	consensus Serine/threonine protein kinase [Signal	91.52
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	91.49
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	91.43
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	91.41
PHA02988	283	hypothetical protein; Provisional	91.39
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	91.33
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	91.29
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	91.28
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	91.26
PF01636	239	APH: Phosphotransferase enzyme family This family	91.15
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	91.11
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	91.1
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	91.09
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	91.09
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	91.04
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	90.97
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	90.92
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	90.88
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	90.84
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	90.84
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	90.83
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	90.83
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	90.82
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	90.78
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	90.73
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	90.71
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	90.67
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	90.66
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	90.65
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	90.65
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	90.61
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	90.56
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	90.42
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	90.41
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	90.37
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	90.36
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	90.33
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	90.27
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	90.25
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	90.23
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	90.22
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	90.21
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	90.12
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	90.09
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	90.04
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	90.01
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	89.99
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	89.93
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	89.89
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	89.88
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	89.84
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	89.78
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	89.7
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	89.51
PTZ00024	335	cyclin-dependent protein kinase; Provisional	89.47
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	89.44
PRK10345	210	hypothetical protein; Provisional	89.4
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	89.35
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	89.34
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	89.27
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	89.26
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	89.25
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	89.16
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	89.13
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	89.09
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	89.03
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	89.02
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	89.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	88.96
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	88.89
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	88.58
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	88.44
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	88.33
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	88.22
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	88.19
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	88.18
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	88.12
KOG2270	520	consensus Serine/threonine protein kinase involved	88.08
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	88.05
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	88.04
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	88.04
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	87.98
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	87.81
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	87.8
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	87.72
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	87.68
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	87.64
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	87.56
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	87.53
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	87.46
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	87.31
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	87.17
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	87.11
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	87.1
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	87.02
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	86.96
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	86.92
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	86.88
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	86.86
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	86.79
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	86.75
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	86.75
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	86.67
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	86.67
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	86.57
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	86.54
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	86.39
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	86.36
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	86.3
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	86.26
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	86.18
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	86.1
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	85.99
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	85.83
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	85.82
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	85.7
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	85.57
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	85.56
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	85.52
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	85.46
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	85.35
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	85.17
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	85.06
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	85.06
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	84.96
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	84.88
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	84.73
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	84.69
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	84.58
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	84.54
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	84.44
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	84.18
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	84.08
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	84.01
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	83.45
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	83.35
KOG0605	550	consensus NDR and related serine/threonine kinases	83.13
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	83.04
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	82.92
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	82.67
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	82.29
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	82.09
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	82.08
PTZ00284	467	protein kinase; Provisional	82.08
KOG0581	364	consensus Mitogen-activated protein kinase kinase	82.08
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	81.88
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	81.73
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	81.72
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	81.51
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	81.5
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	81.42
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	81.38
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	81.34
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	81.34
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	81.1
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	81.03
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	80.9
PRK05231	319	homoserine kinase; Provisional	80.76
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	80.66
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	80.56
KOG0611	668	consensus Predicted serine/threonine protein kinas	80.49

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=100.00  E-value=4.8e-67  Score=557.26  Aligned_cols=236  Identities=35%  Similarity=0.500  Sum_probs=224.9

Q ss_pred             HHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhCCChHhhccccccc
Q 012848          211 QFRELWLHVVLRTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEA  290 (455)
Q Consensus       211 ~~r~~w~~~l~~~le~lGp~fIKlGQ~lStR~DLlP~e~~~~L~~LqD~vpp~~~~~v~~vle~elG~~~~eiF~~fd~~  290 (455)
                      ..++.-.++|+.+|++|||+|||+||++|||||++|++|+++|++|||++||+|+++++++|+++||++++|+|++||++
T Consensus        52 ~~~~~~~~rL~~~L~~LGPtfIK~GQ~LStR~Dl~p~e~~~eL~~LQD~vpp~~~~~~~~iie~eLG~~iee~F~eF~~~  131 (517)
T COG0661          52 ELREKRAERLRLALEELGPTFIKLGQILSTRPDLVPPEYAEELAKLQDRVPPFPFEEAERIIEEELGRPIEELFSEFEPE  131 (517)
T ss_pred             HHhHhHHHHHHHHHHHhCCchhhhhhHHhcCccccCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence            33555678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHcc-ccCccccCHHHHHHHHHHHHH
Q 012848          291 PVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSV-IPAVKWLRLDESVQQFAVFMM  369 (455)
Q Consensus       291 PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~-~P~l~~l~l~e~v~ef~~~l~  369 (455)
                      |+|||||||||+|+|++        |++||||||||||++.|+.||.+|+.++++.+. .|+.+.+++.++++||.+.+.
T Consensus       132 PiAsASIaQVH~A~L~s--------G~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~  203 (517)
T COG0661         132 PIASASIAQVHRAVLKS--------GEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLR  203 (517)
T ss_pred             chhhhhHhhheeEEecC--------CCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHH
Confidence            99999999999999987        699999999999999999999999999999874 566577999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccchhHHhhhchhhHHHHHHHHHHHHHHhhh
Q 012848          370 SQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLL  449 (455)
Q Consensus       370 ~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~l~~~~~~~~~LA~~g~~aflkmlf  449 (455)
                      .||||++||+|+++|++||++++.|+||+|||++||++||||||++|++++|+ +.++..+.+++++|..++++|++|+|
T Consensus       204 ~ElDy~~EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~-~~l~~~g~d~k~ia~~~~~~f~~q~~  282 (517)
T COG0661         204 EELDYRREAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDI-AALKSAGIDRKELAELLVRAFLRQLL  282 (517)
T ss_pred             HHhCHHHHHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccH-HHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999997 45566788899999999999999999


Q ss_pred             ccCCCC
Q 012848          450 VPYLNN  455 (455)
Q Consensus       450 ~dgFv~  455 (455)
                      +|||||
T Consensus       283 ~dgffH  288 (517)
T COG0661         283 RDGFFH  288 (517)
T ss_pred             hcCccc
Confidence            999999

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=100.00  E-value=1.7e-61  Score=514.58  Aligned_cols=227  Identities=31%  Similarity=0.459  Sum_probs=218.7

Q ss_pred             HHHHHHHHHHcCchHHHHHHHHhcCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhCCChHhhccccccccccccC
Q 012848          217 LHVVLRTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGS  296 (455)
Q Consensus       217 ~~~l~~~le~lGp~fIKlGQ~lStR~DLlP~e~~~~L~~LqD~vpp~~~~~v~~vle~elG~~~~eiF~~fd~~PiASAS  296 (455)
                      +++|++++++|||+|||+||.+|||+|++|+||.++|+.|||++||.|++++.++||+|+|.+++++|.+||++||||||
T Consensus        94 a~~L~e~~~~nGg~yIKlGQ~lst~~dllP~Eyv~~L~~LqD~~Pp~~~ee~~~i~e~ElG~~ie~if~~f~~~piaaAS  173 (538)
T KOG1235|consen   94 AERLLELFLRNGGTYIKLGQHLSTRPDLLPKEYVKTLSELQDQAPPFPWEEAFKIFEEELGAPIEDIFSEFDEEPIAAAS  173 (538)
T ss_pred             HHHHHHHHHHcCCeEEEechhhccccccCcHHHHHHHHHHhccCCCCCHHHHHHHHHHHhCCCHHHHHHhcCcchhhhcc
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHc-cccCccccCHHHHHHHHHHHHHHhcCHH
Q 012848          297 IAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISS-VIPAVKWLRLDESVQQFAVFMMSQVDLA  375 (455)
Q Consensus       297 IAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~-~~P~l~~l~l~e~v~ef~~~l~~ELDfr  375 (455)
                      |||||||+|++        |++|||||||||+++.+..|+.+|+.++++++ ++|.++   +..+++|+++.|.+||||.
T Consensus       174 laQVhrA~L~~--------G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~---~~~lvdE~~~~L~~ELDF~  242 (538)
T KOG1235|consen  174 LAQVHRARLKN--------GEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFD---LVWLVDEIAKSLPQELDFT  242 (538)
T ss_pred             hhheEEEEecC--------CCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCc---hhhHHHHHHhhhHhhcchH
Confidence            99999999996        69999999999999999999999999999886 678764   6788999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCC---CeEeCcccCCCCCCCeEEeecccCccccchhHHhhhchhhHHHHHHHHHHHHHHhhhccC
Q 012848          376 REAAHLSRFIYNFRRWK---DVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVPY  452 (455)
Q Consensus       376 ~EA~nl~rf~~~f~~~~---~V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~l~~~~~~~~~LA~~g~~aflkmlf~dg  452 (455)
                      +||+|.++|+++|++.+   .|+||+|||++||+|||||||++|++++|. +.++.++..+.+++..++++|+.|||.+|
T Consensus       243 ~EA~Nae~~~~~f~~~~~~~~V~VP~Vy~~~st~RVLtME~~~G~~i~Dl-~~i~~~gi~~~~i~~~l~~~~~~qIf~~G  321 (538)
T KOG1235|consen  243 KEAKNAERFRENFKDFSLLTYVLVPKVYWDLSTKRVLTMEYVDGIKINDL-DAIDKRGISPHDILNKLVEAYLEQIFKTG  321 (538)
T ss_pred             HHHHhHHHHHHHHHhcccccceeCCeehhhcCcceEEEEEecCCccCCCH-HHHHHcCCCHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999988   899999999999999999999999999996 78888999999999999999999999999


Q ss_pred             CCC
Q 012848          453 LNN  455 (455)
Q Consensus       453 Fv~  455 (455)
                      |||
T Consensus       322 ffH  324 (538)
T KOG1235|consen  322 FFH  324 (538)
T ss_pred             Ccc
Confidence            999

>KOG1236 consensus Predicted unusual protein kinase [General function prediction only]

Probab=100.00  E-value=2.8e-60  Score=485.90  Aligned_cols=272  Identities=46%  Similarity=0.760  Sum_probs=257.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCCCHHHHHHHHhhhcCCC
Q 012848          182 VILLMRALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLRTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAP  261 (455)
Q Consensus       182 ~~~~~R~~~l~~~f~p~~~~~pl~~~~~~~~r~~w~~~l~~~le~lGp~fIKlGQ~lStR~DLlP~e~~~~L~~LqD~vp  261 (455)
                      +..-.|...+.+.|+|..+++|+.  ..++++..|++.|++++|..||+|||+|||+|||+|+|++++|.+|++||.+++
T Consensus        88 ily~~r~~~l~~fffpllll~~~t--~~~r~s~lW~~~L~kaLE~aGPtFIKLGQWAsTR~DlFs~afC~qLSKLHs~vt  165 (565)
T KOG1236|consen   88 ILYHLRLWLLLVFFFPLLLLYPLT--YLPRFSTLWLRLLLKALETAGPTFIKLGQWASTRRDLFSKAFCAQLSKLHSNVT  165 (565)
T ss_pred             eeehhHHHHHHHHhhhHHHhcccc--ccCchHHHHHHHHHHHHHhcCCceEEecccccccccccCHHHHHHHHHHhccCC
Confidence            344567777889999999999988  457789999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhCC-ChHhhccccccccccccCcceEEEeEecccCCCC--------CcCCeEEEEEeeCCCcccch
Q 012848          262 EHSFAYTKKTIERAFGR-RLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQ--------KVKPIVVAVKVRHPGVGESI  332 (455)
Q Consensus       262 p~~~~~v~~vle~elG~-~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~--------~~~G~~VAVKVqrPgV~~~i  332 (455)
                      ||+|..+++.|++++|. +++|||++||+.|||||||||||+|+++..|.++        +...++|||||.||||+++|
T Consensus       166 ~Hs~a~T~k~l~qa~~~~~~~eiF~efn~~PIGsG~IAQVY~atl~~a~lekd~~~~~~~~~~tq~~AiKv~Hp~V~~~i  245 (565)
T KOG1236|consen  166 PHSFAFTKKKLRQAFGVKKIEEIFSEFNREPIGSGCIAQVYRATLKTAYLEKDSGKEYVQKLGTQSCAIKVLHPNVEKQI  245 (565)
T ss_pred             CCchHHHHHHHHHHHCcCcHHHHHHhcCCcccccchhhhhhhhhhhHHHhhcccchhhhcCCccceeeeeccCccHHHHH
Confidence            99999999999999998 9999999999999999999999999998765432        23458999999999999999


Q ss_pred             HhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEee
Q 012848          333 RRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVET  412 (455)
Q Consensus       333 ~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE  412 (455)
                      +.|+.||++.|++.+++|.+.|+++++.+++|...|..|+|+++||.|+.+|..||++++.|.+|+|+.+++++.||+++
T Consensus       246 r~Dl~Il~f~Akl~~~vP~l~wL~l~~~vkqF~v~ln~QvdL~~EA~hL~rF~~NF~~s~~V~fP~P~~~~~~~~vl~E~  325 (565)
T KOG1236|consen  246 RLDLGILGFGAKLINNVPDLSWLSLPLEVKQFSVGLNAQVDLRQEALHLPRFTNNFSGSKKVLFPKPIAPLHTDLVLVET  325 (565)
T ss_pred             HHHHHHHhhhhhhhhhcCccccccCcchHHHHHHHHHhhcchhhhhhhhHHHHHhcccceeecCCcccccccccceeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCccccchhHHhhhchhhHHHHHHHHHHHHHHhhhccCCCC
Q 012848          413 YEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVPYLNN  455 (455)
Q Consensus       413 ~i~G~~i~~~~~~l~~~~~~~~~LA~~g~~aflkmlf~dgFv~  455 (455)
                      |++|.++..+++...+.+.+.+++|+.|++++++|++.|||+|
T Consensus       326 ~~~Gl~v~~~v~~~~~pe~l~kkva~lg~~AllkMl~vDNFvH  368 (565)
T KOG1236|consen  326 YERGLSVLRFVKWKSQPEALVKKVAKLGVNALLKMLIVDNFVH  368 (565)
T ss_pred             ccccccHHhhhhcccChHHHHHHHHHHHHHHHHHHHHhhccee
Confidence            9999999999988778888899999999999999999999998

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=100.00  E-value=2.3e-58  Score=493.11  Aligned_cols=231  Identities=30%  Similarity=0.402  Sum_probs=220.4

Q ss_pred             HHHHHHHHHHcCchHHHHHHHHhcCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhCCChHhhccccccccccccC
Q 012848          217 LHVVLRTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGS  296 (455)
Q Consensus       217 ~~~l~~~le~lGp~fIKlGQ~lStR~DLlP~e~~~~L~~LqD~vpp~~~~~v~~vle~elG~~~~eiF~~fd~~PiASAS  296 (455)
                      +++++.+||++||+|||+||++|||+|++|++||++|++|||++||+|+++++++|+++||.+++++|.+||++|+||||
T Consensus        52 ~~rlr~aLe~LGp~fIKlGQ~LStR~DllP~~~~~eL~~Lqd~vpp~~~~~~~~~ie~elG~~~~~~F~~fd~~PlasaS  131 (537)
T PRK04750         52 GERLRLALEELGPIFVKFGQMLSTRRDLFPPDIADELALLQDRVPPFDGALARAIIEKALGGPVEEWFDDFDIKPLASAS  131 (537)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHcCcccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhCCCHHHHHHhcChhhhcCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHc-cccCccccCHHHHHHHHHHHHHHhcCHH
Q 012848          297 IAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISS-VIPAVKWLRLDESVQQFAVFMMSQVDLA  375 (455)
Q Consensus       297 IAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~-~~P~l~~l~l~e~v~ef~~~l~~ELDfr  375 (455)
                      |||||+|+++++       |++|||||||||+++.|..|+.+|+.++++++ +.|..+++++.++++||.+.+.+|+||.
T Consensus       132 iaQVh~A~l~~~-------G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~~ElD~~  204 (537)
T PRK04750        132 IAQVHFARLKDN-------GREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLHDELDLM  204 (537)
T ss_pred             ccEEEEEEECCC-------CCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHhhCHH
Confidence            999999999862       69999999999999999999999999999887 6788888999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccchhHHhhhchhhHHHHHHHHHHHHHHhhhccCCCC
Q 012848          376 REAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVPYLNN  455 (455)
Q Consensus       376 ~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~l~~~~~~~~~LA~~g~~aflkmlf~dgFv~  455 (455)
                      +||+|+.+|+++|++.+.|+||++||+|||++||||||++|.+++++ +.+...+.+++.+|+.++++|++|+|+|||||
T Consensus       205 ~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~-~~l~~~g~d~~~la~~~v~~~~~Qif~~GffH  283 (537)
T PRK04750        205 REAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDV-AALRAAGTDMKLLAERGVEVFFTQVFRDGFFH  283 (537)
T ss_pred             HHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhH-HHHHhcCCCHHHHHHHHHHHHHHHHHhCCeee
Confidence            99999999999999999999999999999999999999999999985 34555666788999999999999999999999

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=100.00  E-value=4.9e-56  Score=465.69  Aligned_cols=230  Identities=34%  Similarity=0.452  Sum_probs=217.2

Q ss_pred             HHHHHHHHHHcCchHHHHHHHHhcCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhCCChHhhccccccccccccC
Q 012848          217 LHVVLRTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGS  296 (455)
Q Consensus       217 ~~~l~~~le~lGp~fIKlGQ~lStR~DLlP~e~~~~L~~LqD~vpp~~~~~v~~vle~elG~~~~eiF~~fd~~PiASAS  296 (455)
                      +++++++|+++||+|||+||++|||+|++|++||++|++|||++||+|+++++++|+++||.+++++|.+||++|+||||
T Consensus        50 ~~~l~~~l~~lGp~fiKlGQ~lS~r~dllp~~~~~~L~~Lqd~v~p~~~~~~~~~l~~elg~~~~~~F~~fd~~plasaS  129 (437)
T TIGR01982        50 GERLRLALEELGPTFIKFGQTLSTRADLLPADIAEELSLLQDRVPPFDFKVARKVIEAALGGPLEELFAEFEEKPLAAAS  129 (437)
T ss_pred             HHHHHHHHHHcCchhHHHhHHHHhCcccCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCcCHHHHHhhCCCcceeeee
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHc-cccCccccCHHHHHHHHHHHHHHhcCHH
Q 012848          297 IAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISS-VIPAVKWLRLDESVQQFAVFMMSQVDLA  375 (455)
Q Consensus       297 IAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~-~~P~l~~l~l~e~v~ef~~~l~~ELDfr  375 (455)
                      |||||+|++++        |++|||||||||+.+.+..|+.+|+.++++.+ +.|..+.+++.++++||...+.+|+||.
T Consensus       130 igQVh~A~l~~--------G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~  201 (437)
T TIGR01982       130 IAQVHRARLVD--------GKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLR  201 (437)
T ss_pred             hhheEEEEecC--------CCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHH
Confidence            99999999986        69999999999999999999999999999876 6787788899999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccchhHHhhhchhhHHHHHHHHHHHHHHhhhccCCCC
Q 012848          376 REAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVPYLNN  455 (455)
Q Consensus       376 ~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~l~~~~~~~~~LA~~g~~aflkmlf~dgFv~  455 (455)
                      +||+|+++|+++|++++.|.||++|+++||++||||||++|.+++++... ...+....+++..+++++++|++.+||+|
T Consensus       202 ~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~-~~~~~~~~~ia~~~~~~~l~ql~~~g~~H  280 (437)
T TIGR01982       202 REAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAAL-DEAGLDRKALAENLARSFLNQVLRDGFFH  280 (437)
T ss_pred             HHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHH-HhcCCCHHHHHHHHHHHHHHHHHhCCcee
Confidence            99999999999999999999999999999999999999999999987532 22333567899999999999999999998

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []

Probab=100.00  E-value=1.8e-35  Score=259.83  Aligned_cols=119  Identities=41%  Similarity=0.621  Sum_probs=113.8

Q ss_pred             HHhCCChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCcc
Q 012848          274 RAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVK  353 (455)
Q Consensus       274 ~elG~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~  353 (455)
                      ++||++++++|++||++|+|||||||||+|+|++        |++||||||||||++.+..||.+|+.++++++.++...
T Consensus         1 e~lG~~~~~~F~~fd~~PlasASiaQVh~a~l~~--------g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~   72 (119)
T PF03109_consen    1 EELGKPIDEIFDEFDPEPLASASIAQVHRARLKD--------GEEVAVKVQRPGIEEQIEADLRILRRLARLLERLPPFR   72 (119)
T ss_pred             CCcCCCHHHHHHHCCcchhhheehhhheeeeecc--------cchhhhhhcchHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence            5799999999999999999999999999999986        69999999999999999999999999999998776555


Q ss_pred             ccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCccc
Q 012848          354 WLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPV  400 (455)
Q Consensus       354 ~l~l~e~v~ef~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~  400 (455)
                      ++++.+++++|.+.+.+|+||++||+|+++|+++|+++++|+||+||
T Consensus        73 ~~~~~~~~~e~~~~l~~ElDf~~Ea~n~~~~~~~~~~~~~v~vP~vy  119 (119)
T PF03109_consen   73 RLDLEEIVDEFRDSLLEELDFRREAANLERFRKNFADSPRVYVPKVY  119 (119)
T ss_pred             ccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCEecCCCC
Confidence            88999999999999999999999999999999999999999999997

These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.

>KOG1234 consensus ABC (ATP binding cassette) 1 protein [General function prediction only]

Probab=99.98  E-value=5.7e-33  Score=273.22  Aligned_cols=201  Identities=23%  Similarity=0.232  Sum_probs=188.7

Q ss_pred             CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhCCChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEE
Q 012848          242 PDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAV  321 (455)
Q Consensus       242 ~DLlP~e~~~~L~~LqD~vpp~~~~~v~~vle~elG~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAV  321 (455)
                      ..++|+...+.|++.++.+-.+|..++.+++.+++|.+|.+-|++||+.|.|+|||||||+|++++        |.+|||
T Consensus         7 ~~ll~p~l~qi~erVrqsAd~MP~~Ql~~vm~~~lG~nW~~Kf~~fd~~P~AaASIGQVHrArl~~--------g~eVav   78 (363)
T KOG1234|consen    7 GSLLPPTLGQILERVRQSADFMPPKQLEPVMWGELGGNWAQKFSSFDDGPFAAASIGQVHRARLAD--------GPEVAV   78 (363)
T ss_pred             CCccCHHHHHHHHHhcCccccCChhhhhHHHhhhhchhHHHHHHhhccCccccccHHHHHHHHhcC--------CCeeee
Confidence            358999999999999999999999999999999999999999999999999999999999999986        699999


Q ss_pred             EeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccC
Q 012848          322 KVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY  401 (455)
Q Consensus       322 KVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~  401 (455)
                      |||||||.+.|+.|+..+..++++.+++|.  .+.++..++..++.|..|+||++||+.+++|+..++++++++||.++.
T Consensus        79 KiQYPGva~sI~SD~~nl~~lLn~s~llPk--GLFLd~~i~~ArkEL~~ECDYqrEA~~~~kFr~LLs~~p~f~VP~Vv~  156 (363)
T KOG1234|consen   79 KIQYPGVARSIDSDANNLSRLLNFSGLLPK--GLFLDVLIEVARKELKWECDYQREAASALKFRPLLSDDPNFYVPRVVD  156 (363)
T ss_pred             ecCCCchhhhccCcHHHHHHHHhhcccccc--cccHHHHHHHHHHhcccccchHHHHHHHhhhHHHhcCCCCcchhHHHH
Confidence            999999999999999999999999999984  567889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCeEEeecccCccccchhHHhhhchhhHHHHHHHHHHHHHHhhhccCCCC
Q 012848          402 PLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVPYLNN  455 (455)
Q Consensus       402 ~lst~rVLVmE~i~G~~i~~~~~~l~~~~~~~~~LA~~g~~aflkmlf~dgFv~  455 (455)
                      ++||.+||+||.+.|.+|+....   ..+..+..++..+++..|+-||+..|++
T Consensus       157 Elct~rvlt~el~~G~pid~~~~---~sQ~~rn~i~~~~l~lcLrEif~f~fMQ  207 (363)
T KOG1234|consen  157 ELCTVRVLTLELGQGLPIDKTAK---LSQETRNYIGYKLLELCLREIFEFRFMQ  207 (363)
T ss_pred             hhccchhhhhhhhcCccchhhhc---ccHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            99999999999999999987532   2445678999999999999999999875

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.01  E-value=2.4e-09  Score=99.94  Aligned_cols=138  Identities=16%  Similarity=0.123  Sum_probs=85.7

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHH
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMM  369 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~  369 (455)
                      .|||+|+.||||+|+..+        |++|||||.+|+... ...+...+.....   +....+..+...++.++     
T Consensus         3 ~~ig~G~~~~Vy~a~~~~--------g~~vavKv~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-----   65 (190)
T cd05145           3 GCISTGKEANVYHARTGD--------GEELAVKIYKTSTLS-FKDRDKYIEGDPR---FRSRYSKSNPRKLVFAW-----   65 (190)
T ss_pred             ceeecCCCcEEEEEEcCC--------CCEEEEEEEEcCcce-EeeHHHHhcCCcc---cccccccCCHHHHHHHH-----
Confidence            689999999999999763        699999999999642 2222222211100   11111112333333322     


Q ss_pred             HhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccch-hHHhhhchhhHHHHHHHHHHHHHHhh
Q 012848          370 SQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRY-VDELQGHERLKSALAHIGTHALLKML  448 (455)
Q Consensus       370 ~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~~-~~~l~~~~~~~~~LA~~g~~aflkml  448 (455)
                          +..|.+|+.++..     +.+.+|.++  .+.+.+|||||++|..+... +............++..+++++..+-
T Consensus        66 ----~~~E~~~l~~l~~-----~~i~~p~~~--~~~~~~lVmE~~~g~~~~~~~l~~~~~~~~~~~~i~~~l~~~l~~lH  134 (190)
T cd05145          66 ----AEKEFRNLKRLYE-----AGVPVPEPI--LLKKNVLVMEFIGDDGSPAPRLKDVPLEEEEAEELYEQVVEQMRRLY  134 (190)
T ss_pred             ----HHHHHHHHHHHHh-----CCCCCceEE--EecCCEEEEEEecCCCchhhhhhhccCCHHHHHHHHHHHHHHHHHHH
Confidence                3589999998864     357778887  35678999999999754321 21111112234567888888876665


Q ss_pred             hccCCCC
Q 012848          449 LVPYLNN  455 (455)
Q Consensus       449 f~dgFv~  455 (455)
                      -+.|++|
T Consensus       135 ~~~givH  141 (190)
T cd05145         135 QEAGLVH  141 (190)
T ss_pred             HhCCEec
Confidence            5588887

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=98.77  E-value=6.2e-08  Score=91.21  Aligned_cols=136  Identities=17%  Similarity=0.169  Sum_probs=78.6

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHH
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMM  369 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~  369 (455)
                      ..||+|+.|+||+|+..+        |++|||||.+|+.......| ..+....++....+   ..++...++++.    
T Consensus         3 ~~ig~G~~~~Vy~a~~~~--------g~~vAvKv~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~----   66 (190)
T cd05147           3 GCISTGKEANVYHATTAN--------GEERAIKIYKTSILVFKDRD-RYVSGEFRFRHGYC---KSNPRKMVRTWA----   66 (190)
T ss_pred             CccccccceEEEEEECCC--------CCEEEEEEEEecccccccHH-HhhcCCchhhcccc---CCCHHHHHHHHH----
Confidence            579999999999999863        69999999999865443333 11111111111111   123344443332    


Q ss_pred             HhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccchhHHhhhchhhHHHHHHHHHH--HHHHh
Q 012848          370 SQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTH--ALLKM  447 (455)
Q Consensus       370 ~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~l~~~~~~~~~LA~~g~~--aflkm  447 (455)
                           ..|.+|+.++..     ..+..|.++  .+...+|||||++|..+....  +.......+.++..+.+  ..+.+
T Consensus        67 -----~~E~~~l~~l~~-----~~v~~p~~~--~~~~~~iVmE~i~g~~l~~~~--~~~~~~~~~~~~~i~~qi~~~L~~  132 (190)
T cd05147          67 -----EKEMRNLKRLVT-----AGIPCPEPI--LLKSHVLVMEFIGDDGWAAPR--LKDAPLSESKARELYLQVIQIMRI  132 (190)
T ss_pred             -----HHHHHHHHHHHH-----CCCCCCcEE--EecCCEEEEEEeCCCCCcchh--hhcCCCCHHHHHHHHHHHHHHHHH
Confidence                 479999998864     244456555  467779999999996544321  11111122334333322  34455


Q ss_pred             hh-ccCCCC
Q 012848          448 LL-VPYLNN  455 (455)
Q Consensus       448 lf-~dgFv~  455 (455)
                      ++ ..|++|
T Consensus       133 l~H~~giiH  141 (190)
T cd05147         133 LYQDCRLVH  141 (190)
T ss_pred             HHHhCCccc
Confidence            54 668887

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd05119 RIO RIO kinase family, catalytic domain

Probab=98.39  E-value=2.6e-06  Score=77.90  Aligned_cols=131  Identities=20%  Similarity=0.082  Sum_probs=78.4

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHH
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMM  369 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~  369 (455)
                      ++|++|+.|+||+|+..+        |++|||||.+|+.......+..++   ...   .......++....        
T Consensus         3 ~~lg~G~~g~Vy~a~~~~--------~~~vavKv~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~--------   60 (187)
T cd05119           3 GPIGTGKEADVYLALDGD--------GEPVAVKIYRTGRTSFKKRKRYRT---GDY---RFGRKKSNWRYLS--------   60 (187)
T ss_pred             cccccccceeEEEEECCC--------CCEEEEEEEecCccchhhhhhhhH---HHH---HhccCCcchhhhh--------
Confidence            579999999999998753        689999999998765444333222   011   1111111111111        


Q ss_pred             HhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccC-----ccccchhHHhhhchhhHHHHHHHHHHHH
Q 012848          370 SQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQG-----ECVSRYVDELQGHERLKSALAHIGTHAL  444 (455)
Q Consensus       370 ~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G-----~~i~~~~~~l~~~~~~~~~LA~~g~~af  444 (455)
                       +.....|..++.+....     .+.+|+++  .+...+|+|||++|     ..+.+...    . .....++..++.+.
T Consensus        61 -~~~~~~e~~~l~~l~~~-----~~~~~~~~--~~~~~~lv~e~~~g~~~~~~~l~~~~~----~-~~~~~~~~~~~~~l  127 (187)
T cd05119          61 -RLWAEKEFRNLKRLYEA-----GVPVPKPI--DLNRHVLVMEFIGGDGIPAPRLKDVRL----L-EDPEELYDQILELM  127 (187)
T ss_pred             -hHHHHHHHHHHHHHHHc-----CCCCCceE--ecCCCEEEEEEeCCCCccChhhhhhhh----c-ccHHHHHHHHHHHH
Confidence             12234556666666442     36688887  46778999999999     44443321    1 22356666666666


Q ss_pred             HHhhhccCCCC
Q 012848          445 LKMLLVPYLNN  455 (455)
Q Consensus       445 lkmlf~dgFv~  455 (455)
                      ..+.-..|++|
T Consensus       128 ~~lh~~~~ivH  138 (187)
T cd05119         128 RKLYREAGLVH  138 (187)
T ss_pred             HHHhhccCcCc
Confidence            65554477777

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>smart00090 RIO RIO-like kinase

Probab=98.24  E-value=7e-06  Score=80.14  Aligned_cols=133  Identities=21%  Similarity=0.129  Sum_probs=80.2

Q ss_pred             ccccccCcceEEEeE--ecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccC--ccccCHHHHHHHHH
Q 012848          290 APVASGSIAQVHRAS--LRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPA--VKWLRLDESVQQFA  365 (455)
Q Consensus       290 ~PiASASIAQVHrA~--Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~--l~~l~l~e~v~ef~  365 (455)
                      +++|.|+.||||+|+  .++        |++||||+.+++....-..+..        ....+.  +...+..+.+    
T Consensus        34 ~~Lg~G~~g~Vy~a~~~~~~--------g~~vaiK~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~----   93 (237)
T smart00090       34 GCISTGKEANVYHALDFDGS--------GKERAVKIYRTGTLEFKRRDRY--------VDGDFRFKYRKINPRKLV----   93 (237)
T ss_pred             CeeccCcceeEEEEEecCCC--------CcEEEEEEEEcCcceecchhhh--------cccchhhccCCCCHHHHH----
Confidence            589999999999998  433        6999999999976542221110        000000  0111111211    


Q ss_pred             HHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccchh-HHhhhchhhHHHHHHHHHHHH
Q 012848          366 VFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYV-DELQGHERLKSALAHIGTHAL  444 (455)
Q Consensus       366 ~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~~~-~~l~~~~~~~~~LA~~g~~af  444 (455)
                           +..+..|+.++.++...     .+.+|+++.  .+..+|||||++|..+.+.. ............++..++. .
T Consensus        94 -----~~~~~~E~~~L~~L~~~-----~i~~p~~~~--~~~~~lV~E~~~g~~L~~~~~~~~~~~~~~~~~i~~qi~~-~  160 (237)
T smart00090       94 -----RLWAEKEFRNLQRLYEA-----GVPVPKPIA--WRRNVLVMEFIGGDGLPAPRLKDVEPEEEEEFELYDDILE-E  160 (237)
T ss_pred             -----HHHHHHHHHHHHHHHhc-----CCCCCeeeE--ecCceEEEEEecCCcccccccccCCcchHHHHHHHHHHHH-H
Confidence                 12468899999998642     567888874  35679999999998776542 1111111112355655554 3


Q ss_pred             HHhhhccC-CCC
Q 012848          445 LKMLLVPY-LNN  455 (455)
Q Consensus       445 lkmlf~dg-Fv~  455 (455)
                      +..+...| ++|
T Consensus       161 l~~LH~~g~iiH  172 (237)
T smart00090      161 MRKLYKEGELVH  172 (237)
T ss_pred             HHHHHhcCCEEe
Confidence            66677777 776

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.08  E-value=1.2e-05  Score=76.47  Aligned_cols=127  Identities=24%  Similarity=0.133  Sum_probs=72.4

Q ss_pred             EEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHHHhcCHHHHHH
Q 012848          300 VHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAA  379 (455)
Q Consensus       300 VHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~~ELDfr~EA~  379 (455)
                      ||.|.-.+        |++||||+=+.+.. .++.    .+   +-...-+.+....-...     .....+.--++|++
T Consensus         2 Vy~~~~~~--------~~~~a~K~~r~~~~-~Fk~----~~---~y~~~~~r~~~~~~~~~-----~~~~~~~~~~~E~~   60 (188)
T PF01163_consen    2 VYHAIDPD--------GEEVAVKIYRTGRT-SFKR----RK---KYRDYDYRFKKYRHKSS-----WRYLIREWAKKEFR   60 (188)
T ss_dssp             EEEEEECT--------TEEEEEEEE-S----SS-H----HH---HHTTTSTTSTTC--G-------CHHHHHHHHHHHHH
T ss_pred             EEEEECCC--------CCEEEEEEeccCce-EEEE----ee---eeecccchhcccccccC-----HHHHHHHHHHHHHH
Confidence            77777643        69999999998843 3333    11   11111121110000000     00111234477999


Q ss_pred             HHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeeccc--CccccchhHHhhhchhhHHHHHHHHHHHHHHhhhccCCCC
Q 012848          380 HLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQ--GECVSRYVDELQGHERLKSALAHIGTHALLKMLLVPYLNN  455 (455)
Q Consensus       380 nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~--G~~i~~~~~~l~~~~~~~~~LA~~g~~aflkmlf~dgFv~  455 (455)
                      ||.++.+     ..|.+|+|+  ..++++||||||+  |.++.++.+. .-.....+.+...+++...+|+-..|+||
T Consensus        61 ~L~~l~~-----~Gv~vP~p~--~~~~~~ivME~I~~~G~~~~~l~~~-~~~~~~~~~~~~~il~~~~~~~~~~givH  130 (188)
T PF01163_consen   61 NLKRLYE-----AGVPVPKPY--DYNRNVIVMEYIGEDGVPLPRLKDV-DLSPEEPKELLEEILEEIIKMLHKAGIVH  130 (188)
T ss_dssp             HHHHCCC-----TT-SS--EE--EEETTEEEEE--EETTEEGGCHHHC-GGGGSTHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred             HHHHHHH-----CCccCCcEE--EEeCCEEEEEecCCCccchhhHHhc-cccchhHHHHHHHHHHHHHHHHHhcCcee
Confidence            9987653     468999999  6789999999999  9999886433 21133467788888888888887888877

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=97.91  E-value=6.7e-05  Score=70.07  Aligned_cols=127  Identities=15%  Similarity=0.064  Sum_probs=76.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccc--hHhHHHHHHHHHHHHccccCccccCHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGES--IRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAV  366 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~--i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~  366 (455)
                      .++|+.|+.|+||+|..++        |+.||||+.+++....  +..+-.          ..+..   ...+..     
T Consensus        20 ~~~i~~G~~g~Vy~~~~~~--------g~~vavK~~~~~~~~~~~~~~~~~----------~~~~~---~~~~~~-----   73 (198)
T cd05144          20 GNQIGVGKESDVYLALDPD--------GNPVALKFHRLGRTSFRKVKRKRD----------YLGDR---KHASWL-----   73 (198)
T ss_pred             CCccccCcceEEEEEEcCC--------CCEEEEEEEecccchhhhhcchHH----------HHhcc---ccchhH-----
Confidence            5889999999999998864        6999999988764211  010100          00000   001111     


Q ss_pred             HHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccchhHHhhhchhhHHHHHHHHHHHHHH
Q 012848          367 FMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLK  446 (455)
Q Consensus       367 ~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~l~~~~~~~~~LA~~g~~aflk  446 (455)
                       -..+.++..|...+..+...     .+.+|+++.  ..+..+||||++|.++.+....     .....++..+.++. .
T Consensus        74 -~~~~~~~~~E~~~l~~l~~~-----~i~v~~~~~--~~~~~lv~e~~~g~~L~~~~~~-----~~~~~~~~~i~~~l-~  139 (198)
T cd05144          74 -YLSRLAAQKEFAALKALYEE-----GFPVPKPID--WNRHAVVMEYIDGVELYRVRVL-----EDPEEVLDEILEEI-V  139 (198)
T ss_pred             -HHhHHHHHHHHHHHHHHHHc-----CCCCCceee--cCCceEEEEEeCCcchhhcccc-----ccHHHHHHHHHHHH-H
Confidence             11223456677777666432     356787774  4667999999999988765321     12345666665544 4


Q ss_pred             hhhccCCCC
Q 012848          447 MLLVPYLNN  455 (455)
Q Consensus       447 mlf~dgFv~  455 (455)
                      .+...|++|
T Consensus       140 ~lh~~gi~H  148 (198)
T cd05144         140 KAYKHGIIH  148 (198)
T ss_pred             HHHHCCCCc
Confidence            556688887

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PRK14879 serine/threonine protein kinase; Provisional

Probab=97.90  E-value=8.2e-05  Score=69.30  Aligned_cols=117  Identities=18%  Similarity=0.119  Sum_probs=77.5

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHH
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMM  369 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~  369 (455)
                      ++|+.|+-|.||+|+..         |.+|+||+..|.....-..|-.                               .
T Consensus         2 ~~l~~G~~~~vy~~~~~---------~~~~~vK~~~~~~~~~~~~~~~-------------------------------~   41 (211)
T PRK14879          2 KLIKRGAEAEIYLGDFL---------GIKAVIKWRIPKRYRHPELDER-------------------------------I   41 (211)
T ss_pred             cccccCceEEEEEEeeC---------CCceEEEEeCCcCCcChHHHHH-------------------------------H
Confidence            57899999999999872         5789999988764222111100                               1


Q ss_pred             HhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccchhHHhhhchhhHHHHHHHHHHHHHHhhh
Q 012848          370 SQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLL  449 (455)
Q Consensus       370 ~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~l~~~~~~~~~LA~~g~~aflkmlf  449 (455)
                      ...++.+|++++.....     ..+.+|.++....+..+|+|||++|.++.+++.....   ....++..+.. .+.++-
T Consensus        42 ~~~~~~~E~~~l~~l~~-----~~i~~p~~~~~~~~~~~lv~e~~~G~~L~~~~~~~~~---~~~~i~~~i~~-~l~~lH  112 (211)
T PRK14879         42 RRERTRREARIMSRARK-----AGVNVPAVYFVDPENFIIVMEYIEGEPLKDLINSNGM---EELELSREIGR-LVGKLH  112 (211)
T ss_pred             HHHHHHHHHHHHHHHHH-----CCCCCCeEEEEeCCCCEEEEEEeCCcCHHHHHHhccH---HHHHHHHHHHH-HHHHHH
Confidence            12345777777776642     3577888886667889999999999999887643211   23345555444 455666


Q ss_pred             ccCCCC
Q 012848          450 VPYLNN  455 (455)
Q Consensus       450 ~dgFv~  455 (455)
                      ..|++|
T Consensus       113 ~~~i~H  118 (211)
T PRK14879        113 SAGIIH  118 (211)
T ss_pred             hCCccc
Confidence            777766

>cd05151 ChoK Choline Kinase (ChoK)

Probab=97.69  E-value=0.00018  Score=64.28  Aligned_cols=78  Identities=17%  Similarity=0.139  Sum_probs=60.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      -+|++.|..++||+.+..         |++|+||+-+++..                                       
T Consensus         3 ~~~l~~G~~~~vy~~~~~---------~~~~~lK~~~~~~~---------------------------------------   34 (170)
T cd05151           3 ISPLKGGMTNKNYRVEVA---------NKKYVVRIPGNGTE---------------------------------------   34 (170)
T ss_pred             eeecCCcccCceEEEEEC---------CeEEEEEeCCCCcc---------------------------------------
Confidence            478999999999999863         47899998776531                                       


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccc
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSR  421 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~  421 (455)
                       ...|+..|+++++.+.+.      ..+|+++....+..+++|||++|.++.+
T Consensus        35 -~~~~~~~E~~~l~~l~~~------~~~P~~~~~~~~~~~lv~e~i~G~~l~~   80 (170)
T cd05151          35 -LLINRENEAENSKLAAEA------GIGPKLYYFDPETGVLITEFIEGSELLT   80 (170)
T ss_pred             -cccCHHHHHHHHHHHHHh------CCCCceEEEeCCCCeEEEEecCCCcccc
Confidence             124667888888877653      2378888766667899999999998875

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=97.65  E-value=0.00049  Score=68.65  Aligned_cols=134  Identities=19%  Similarity=0.109  Sum_probs=81.6

Q ss_pred             cccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHHH
Q 012848          291 PVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMS  370 (455)
Q Consensus       291 PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~~  370 (455)
                      ||.+|==|-||+|.-.+        |..|||||.+...-+.-+.+-.+...     ..+-..+. +...++....     
T Consensus        55 ~istGKEA~Vy~a~~~~--------~~~~avKiyr~~t~~fk~~~~Yi~gd-----~Rf~~~~~-~rr~lv~~W~-----  115 (268)
T COG1718          55 CISTGKEANVYLAETGD--------GRYVAVKIYRTSTSEFKRIRRYIQGD-----PRFRNSRS-NRRKLVFAWA-----  115 (268)
T ss_pred             eecCCcceEEEeeccCC--------CceEEEEEEehhhhhhhhHHHHHhcC-----hhhhcCCC-CHHHHHHHHH-----
Confidence            77788888899998753        69999999998864433322221110     01111111 3344443332     


Q ss_pred             hcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCc--cccchhHHhhhchhhHHHHHHHHHHHHHHhh
Q 012848          371 QVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGE--CVSRYVDELQGHERLKSALAHIGTHALLKML  448 (455)
Q Consensus       371 ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~--~i~~~~~~l~~~~~~~~~LA~~g~~aflkml  448 (455)
                          +.|-+||.|..+     ..|.+|+||  .+-++||+||||...  +--.+ ++..........+-...++-.-+|.
T Consensus       116 ----~kEf~NL~R~~e-----AGVrvP~Pi--~~~~nVLvMEfIg~~g~pAP~L-kDv~~e~~e~~~~~~~~v~~~~~l~  183 (268)
T COG1718         116 ----RKEFRNLKRAYE-----AGVRVPEPI--AFRNNVLVMEFIGDDGLPAPRL-KDVPLELEEAEGLYEDVVEYMRRLY  183 (268)
T ss_pred             ----HHHHHHHHHHHH-----cCCCCCCce--eecCCeEEEEeccCCCCCCCCc-ccCCcCchhHHHHHHHHHHHHHHHH
Confidence                678889998875     369999999  899999999999865  21111 1111111134455566666666666


Q ss_pred             hccCCCC
Q 012848          449 LVPYLNN  455 (455)
Q Consensus       449 f~dgFv~  455 (455)
                      -+-|+||
T Consensus       184 ~~a~LVH  190 (268)
T COG1718         184 KEAGLVH  190 (268)
T ss_pred             HhcCccc
Confidence            6677777

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=97.31  E-value=0.0011  Score=61.16  Aligned_cols=112  Identities=21%  Similarity=0.158  Sum_probs=69.2

Q ss_pred             ccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHHHh
Q 012848          292 VASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQ  371 (455)
Q Consensus       292 iASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~~E  371 (455)
                      |+.|+-|.||+|...         |.+|+||+..+.....=.                       ++..        .+.
T Consensus         2 ig~G~~~~vy~~~~~---------~~~~viK~~~~~~~~~~~-----------------------~~~~--------~~~   41 (199)
T TIGR03724         2 IAKGAEAIIYLGDFL---------GLKAVIKERVPKSYRHPE-----------------------LDER--------IRR   41 (199)
T ss_pred             CCCCceEEEEEeecC---------CccEEEEEecCCcCcCch-----------------------HHHH--------HHH
Confidence            678999999999852         589999997664311100                       0100        011


Q ss_pred             cCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccchhHHhhhchhhHHHHHHHHHHHHHHhhhcc
Q 012848          372 VDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVP  451 (455)
Q Consensus       372 LDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~l~~~~~~~~~LA~~g~~aflkmlf~d  451 (455)
                      -.+.+|.+++.++..     ..+.+|.++.......+|+|||++|.++.+++..   ...   .++..+.. .+..+...
T Consensus        42 ~~~~~E~~~l~~l~~-----~~i~~p~~~~~~~~~~~lv~e~~~g~~l~~~~~~---~~~---~~~~~i~~-~l~~lH~~  109 (199)
T TIGR03724        42 ERTRNEARLLSRARK-----AGVNTPVVYDVDPDNKTIVMEYIEGKPLKDVIEE---GND---ELLREIGR-LVGKLHKA  109 (199)
T ss_pred             HHHHHHHHHHHHHHH-----CCCCCCEEEEEECCCCEEEEEEECCccHHHHHhh---cHH---HHHHHHHH-HHHHHHHC
Confidence            234667777776653     3577888886556667999999999998876432   110   34443333 33445666


Q ss_pred             CCCC
Q 012848          452 YLNN  455 (455)
Q Consensus       452 gFv~  455 (455)
                      |++|
T Consensus       110 gi~H  113 (199)
T TIGR03724       110 GIVH  113 (199)
T ss_pred             Ceec
Confidence            6665

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=97.25  E-value=0.0015  Score=57.79  Aligned_cols=111  Identities=18%  Similarity=0.055  Sum_probs=68.1

Q ss_pred             ccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHHHh
Q 012848          292 VASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQ  371 (455)
Q Consensus       292 iASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~~E  371 (455)
                      |++|+.|+||+++..+       .|++++||+.+++-...                                      .+
T Consensus         1 l~~g~~~~v~~~~~~~-------~~~~~~~K~~~~~~~~~--------------------------------------~~   35 (215)
T cd00180           1 LGEGGFGTVYLARDKK-------TGKKVAIKIIKKEDSSS--------------------------------------LL   35 (215)
T ss_pred             CCcCCceEEEEEEecC-------CCcEEEEEEeccccchh--------------------------------------HH
Confidence            5789999999999964       26999999988875433                                      11


Q ss_pred             cCHHHHHHHHHHHHHHhCCCCCeEeCcccCC--CCCCCeEEeecccCccccchhHHh--hhchhhHHHHHHHHHHHHHHh
Q 012848          372 VDLAREAAHLSRFIYNFRRWKDVSFPKPVYP--LVHPAVLVETYEQGECVSRYVDEL--QGHERLKSALAHIGTHALLKM  447 (455)
Q Consensus       372 LDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~--lst~rVLVmE~i~G~~i~~~~~~l--~~~~~~~~~LA~~g~~aflkm  447 (455)
                      -++.+|.+.+.++..       ..+|+++.-  ......++|||++|.++.++++..  .........++..+++++ +.
T Consensus        36 ~~~~~e~~~~~~l~~-------~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~  107 (215)
T cd00180          36 EELLREIEILKKLNH-------PNIVKLYGVFEDENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEGL-EY  107 (215)
T ss_pred             HHHHHHHHHHHhcCC-------CCeeeEeeeeecCCeEEEEEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHH-HH
Confidence            123445544544432       334444432  235789999999999998876542  112222344555555544 34


Q ss_pred             hhccCCCC
Q 012848          448 LLVPYLNN  455 (455)
Q Consensus       448 lf~dgFv~  455 (455)
                      +-..|++|
T Consensus       108 lh~~~~~H  115 (215)
T cd00180         108 LHSNGIIH  115 (215)
T ss_pred             HHhCCeec
Confidence            44556665

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=97.20  E-value=0.0016  Score=64.07  Aligned_cols=115  Identities=10%  Similarity=0.011  Sum_probs=73.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .++++.+--|+|+.+.. +        +.++|||+-+|.....   +-.+.+       +                    
T Consensus        36 ~~~l~~~~f~~v~l~~~-~--------~~~~iiKvf~~~~~~~---~~~~~~-------f--------------------   76 (232)
T PRK10359         36 IKVFRNIDDTKVSLIDT-D--------YGKYILKVFAPKVKRT---ERFLKS-------F--------------------   76 (232)
T ss_pred             EEEecCCCceEEEEEec-C--------CCcEEEEEechhcCch---HHHHHh-------h--------------------
Confidence            47888999999997543 1        4689999999986422   100000       0                    


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCccc--------CCCCCCCeEEeecccCccccchhHHhhhchhhHHHHHHHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPV--------YPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIG  440 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~--------~~lst~rVLVmE~i~G~~i~~~~~~l~~~~~~~~~LA~~g  440 (455)
                      ...==|++||+++.++.+.     .+..|..+        ..+++..+|+|||++|.++.++.+ .  .    ..+.. .
T Consensus        77 ~~g~~~e~Ea~~l~rL~~~-----GI~~~~d~~~~~~~~~~~~~~~~~lvmEyi~G~tL~~~~~-~--~----~~~~~-~  143 (232)
T PRK10359         77 VKGDYYENLIVQTDRVRSE-----GLASLNDFYLLAERKTLRYAHTYIMLIEYIEGVELNDMPE-I--S----EDVKA-K  143 (232)
T ss_pred             hhhHHHHHHHHHHHHHHHC-----CCCcceEeeeecccccccccCCeEEEEEEECCccHHHhhh-c--c----HHHHH-H
Confidence            0000147899999988532     33333333        124788999999999999987632 1  1    12222 3


Q ss_pred             HHHHHHhhhccCCCC
Q 012848          441 THALLKMLLVPYLNN  455 (455)
Q Consensus       441 ~~aflkmlf~dgFv~  455 (455)
                      +-..++++..+|++|
T Consensus       144 i~~~l~~lH~~gi~H  158 (232)
T PRK10359        144 IKASIESLHQHGMVS  158 (232)
T ss_pred             HHHHHHHHHHcCCcc
Confidence            334589999999998

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=97.09  E-value=0.005  Score=59.18  Aligned_cols=140  Identities=16%  Similarity=0.112  Sum_probs=76.4

Q ss_pred             cccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCcc----ccCHHHHHHHHHH
Q 012848          291 PVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVK----WLRLDESVQQFAV  366 (455)
Q Consensus       291 PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~----~l~l~e~v~ef~~  366 (455)
                      +|++|==|=||.|.-.++.. ....+.+|||||=+.+..+-=.     .+   ....--|.++    +.+...++...  
T Consensus         4 ~i~~GKEa~V~~~~~~~~~~-~~~~~~~~avKi~r~~~~~Fk~-----~~---~y~~~~~rf~~~~~k~~~~~~~~~w--   72 (197)
T cd05146           4 CISTGKESVVLHANGGSNET-EQVIPTECAIKVFKTTLNEFKN-----RD---KYIKDDYRFKDRFSKLNPRKIIRMW--   72 (197)
T ss_pred             ccccCcceEEEEEecCcccc-cccCCceEEEEEEeccceeEcC-----hh---hhccCCcccccCcCCCCHHHHHHHH--
Confidence            45666667789887432100 0113589999999866432211     11   1110001111    12233333222  


Q ss_pred             HHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccc-hhHHhhhchhhHHHHHHHHHHHHH
Q 012848          367 FMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSR-YVDELQGHERLKSALAHIGTHALL  445 (455)
Q Consensus       367 ~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~-~~~~l~~~~~~~~~LA~~g~~afl  445 (455)
                             =+.|++|+.++.+.     .+.+|+|+  .+.+++|||||+.|..+.. .+....-.......+....+.+..
T Consensus        73 -------a~kE~r~L~rl~~~-----Gv~vP~pi--~~~~~~lvME~Ig~~~~~~~~Lkd~~~~~~~~~~i~~~i~~~l~  138 (197)
T cd05146          73 -------AEKEMHNLKRMQKA-----GIPCPEVV--VLKKHVLVMSFIGDDQVPAPKLKDAKLNDEEMKNAYYQVLSMMK  138 (197)
T ss_pred             -------HHHHHHHHHHHHHc-----CCCCCeEE--EecCCEEEEEEcCCCCccchhhhccccCHHHHHHHHHHHHHHHH
Confidence                   26899999998764     68899999  5799999999999842211 011111011112344555556665


Q ss_pred             HhhhccCCCC
Q 012848          446 KMLLVPYLNN  455 (455)
Q Consensus       446 kmlf~dgFv~  455 (455)
                      +|+-..|+||
T Consensus       139 ~l~H~~glVH  148 (197)
T cd05146         139 QLYKECNLVH  148 (197)
T ss_pred             HHHHhCCeec
Confidence            6655778877

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>PRK10593 hypothetical protein; Provisional

Probab=97.04  E-value=0.0038  Score=62.96  Aligned_cols=96  Identities=16%  Similarity=0.033  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHhCCChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHH
Q 012848          266 AYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKI  345 (455)
Q Consensus       266 ~~v~~vle~elG~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l  345 (455)
                      +.+++.+++.+|..+.+      .+||+.|.++|||+-...+         ..+.||+.+.+..                
T Consensus         2 ~~~~~~~~~~~~~~~~~------~~~i~~G~~~~vy~~~~~~---------~~~~~k~~~~~~~----------------   50 (297)
T PRK10593          2 EQLRAELSHLLGEKLSR------VECISEQPYAALWALYDSQ---------GNPMPLMARSFST----------------   50 (297)
T ss_pred             hHHHHHHHHHhchhhhe------eeecCCccceeEEEEEcCC---------CCEEEEEeccccc----------------
Confidence            45778888888874433      6899999999999987643         3588898543210                


Q ss_pred             HccccCccccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccC-----CCCCCCeEEeecccCcccc
Q 012848          346 SSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY-----PLVHPAVLVETYEQGECVS  420 (455)
Q Consensus       346 ~~~~P~l~~l~l~e~v~ef~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~-----~lst~rVLVmE~i~G~~i~  420 (455)
                                  .+             .+..||++++...+    ...|.||+|+.     ...+...|||||++|.++.
T Consensus        51 ------------~~-------------~~~~Ea~~L~~L~~----~~~vpVP~V~~~~~~~~~~g~~~LVmE~i~G~~~~  101 (297)
T PRK10593         51 ------------PG-------------VAQQEAWKLSMLAR----SGTVRMPTVYGVMTHEQSPGPDVLLLERLRGVSVE  101 (297)
T ss_pred             ------------ch-------------HHHHHHHHHHHHcc----CCCCCcCcEEEEeccCCcCCCeEEEEeccCCEecC
Confidence                        00             23789999987754    23589999994     1235689999999999887


Q ss_pred             c
Q 012848          421 R  421 (455)
Q Consensus       421 ~  421 (455)
                      +
T Consensus       102 ~  102 (297)
T PRK10593        102 A  102 (297)
T ss_pred             C
Confidence            5

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=96.69  E-value=0.0074  Score=56.81  Aligned_cols=84  Identities=17%  Similarity=0.246  Sum_probs=52.3

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHH
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMM  369 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~  369 (455)
                      ++|+.|+.|+||+|++.+        ++.||+|+.+++.....                                     
T Consensus         1 ~~ig~g~~g~vy~~~~~~--------~~~~a~K~~~~~~~~~~-------------------------------------   35 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKD--------KTPVAVKTCKEDLPQEL-------------------------------------   35 (250)
T ss_pred             CccCCCCCceEEEEEecC--------CcEEEEEecCCcCCHHH-------------------------------------
Confidence            478999999999999754        58999998776543111                                     


Q ss_pred             HhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccchhH
Q 012848          370 SQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVD  424 (455)
Q Consensus       370 ~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~  424 (455)
                       +.++.+|+..+.++     +.+++.-+.-+........++|||++|.++.++..
T Consensus        36 -~~~~~~e~~~l~~l-----~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~   84 (250)
T cd05085          36 -KIKFLSEARILKQY-----DHPNIVKLIGVCTQRQPIYIVMELVPGGDFLSFLR   84 (250)
T ss_pred             -HHHHHHHHHHHHhC-----CCCCcCeEEEEEecCCccEEEEECCCCCcHHHHHH
Confidence             11345555555543     12222111111223345789999999999887654

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=96.52  E-value=0.0073  Score=59.37  Aligned_cols=45  Identities=24%  Similarity=0.241  Sum_probs=32.6

Q ss_pred             HHHhCCChHhhcccccc-------ccccccCcceEEEeEecccCCCCCcCCeEEEEEee
Q 012848          273 ERAFGRRLSEIFDGFEE-------APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVR  324 (455)
Q Consensus       273 e~elG~~~~eiF~~fd~-------~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVq  324 (455)
                      ++|+|.+.+-++...++       ..++.|+-|+||+|+.+.+       |+.||||+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~-------~~~v~iK~~   53 (292)
T cd06657           2 HEQFRAALQMVVDPGDPRTYLDNFIKIGEGSTGIVCIATVKSS-------GKLVAVKKM   53 (292)
T ss_pred             hhHhhhhceEeecCCChHHHhhhHHHcCCCCCeEEEEEEEcCC-------CeEEEEEEe
Confidence            35555555545544444       4599999999999999752       699999964

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=96.42  E-value=0.014  Score=53.90  Aligned_cols=85  Identities=18%  Similarity=0.099  Sum_probs=60.0

Q ss_pred             ccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHH
Q 012848          288 EEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVF  367 (455)
Q Consensus       288 d~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~  367 (455)
                      |-+|++.|..++||+.+..+        |++++||+-+++-..                                     
T Consensus         2 ~~~~l~~G~~n~~~~v~~~~--------g~~~ilK~~~~~~~~-------------------------------------   36 (223)
T cd05154           2 EVRQLSGGQSNLTYLLTAGG--------GRRLVLRRPPPGALL-------------------------------------   36 (223)
T ss_pred             cceecCCCccceEEEEEecC--------CcceEEEeCCCcccC-------------------------------------
Confidence            45799999999999998853        589999986655210                                     


Q ss_pred             HHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCC-----CCeEEeecccCccccchh
Q 012848          368 MMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVH-----PAVLVETYEQGECVSRYV  423 (455)
Q Consensus       368 l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst-----~rVLVmE~i~G~~i~~~~  423 (455)
                       ...-++..|++.++.+++.     .+.+|+++.-...     ...++|||++|.++.+..
T Consensus        37 -~~~~~~~~E~~~~~~l~~~-----~~~vp~~~~~~~~~~~~~~~~~v~e~i~G~~l~~~~   91 (223)
T cd05154          37 -PSAHDVAREYRVLRALAGT-----GVPVPKVLALCEDPSVLGTPFYVMERVDGRVLRDRL   91 (223)
T ss_pred             -cccccHHHHHHHHHHhhCC-----CCCCCCEEEECCCCCccCCceEEEEEeCCEecCCCC
Confidence             0013557788888776543     4668887643222     348999999999988753

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=96.35  E-value=0.024  Score=54.35  Aligned_cols=31  Identities=23%  Similarity=0.184  Sum_probs=25.7

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.++.|..|+||+|+...+       |+.||||+.+.+
T Consensus         7 ~~l~~g~~g~v~~~~~~~~-------~~~~~iK~~~~~   37 (277)
T cd06917           7 ELIGRGAYGAVYRGKHVPT-------GRVVALKIINLD   37 (277)
T ss_pred             hheeccCCceEEEEEEcCC-------CcEEEEEEecCC
Confidence            5789999999999998642       689999987554

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=96.23  E-value=0.028  Score=51.24  Aligned_cols=85  Identities=22%  Similarity=0.259  Sum_probs=54.1

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+++++++.|+||+|+..+.       |+.|+||+.+.+...                            .         
T Consensus         4 ~~~i~~g~~~~v~~~~~~~~-------~~~~~iK~~~~~~~~----------------------------~---------   39 (225)
T smart00221        4 GKKLGEGAFGKVYLARDKGT-------GELVAVKVLKKEKTE----------------------------K---------   39 (225)
T ss_pred             eeEeecCCCeEEEEEEEcCC-------CcEEEEEeeccccch----------------------------H---------
Confidence            36899999999999999752       589999998776432                            0         


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCccc--CCCCCCCeEEeecccCccccchhHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPV--YPLVHPAVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~--~~lst~rVLVmE~i~G~~i~~~~~~  425 (455)
                       ..-++.+|.+.+.++    + .++  +++++  ........+++||.+|.++.++.+.
T Consensus        40 -~~~~~~~e~~~~~~~----~-~~~--i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~   90 (225)
T smart00221       40 -QREEFLREIRILKKL----K-HPN--IVKLYGVFEDPEPLYLVMEYCEGGDLFDYLRK   90 (225)
T ss_pred             -HHHHHHHHHHHHHhC----C-CCC--hhhheeeeecCCceEEEEeccCCCCHHHHHHh
Confidence             001334444444444    1 111  22222  1223667899999999988877654

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=96.22  E-value=0.033  Score=47.14  Aligned_cols=79  Identities=16%  Similarity=0.115  Sum_probs=56.1

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .++++.|+.+.||+++..         +..++||+..++..                                       
T Consensus         3 ~~~i~~g~~~~v~~~~~~---------~~~~~iK~~~~~~~---------------------------------------   34 (155)
T cd05120           3 IKLLKGGLTNRVYLLGTK---------DEDYVLKINPSREK---------------------------------------   34 (155)
T ss_pred             ceecccccccceEEEEec---------CCeEEEEecCCCCc---------------------------------------
Confidence            467899999999999984         36899998776632                                       


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCC--CCCeEEeecccCccccch
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLV--HPAVLVETYEQGECVSRY  422 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~ls--t~rVLVmE~i~G~~i~~~  422 (455)
                        +.++..|...++++.+.     ...+|+++....  ....++|||++|.++.++
T Consensus        35 --~~~~~~e~~~~~~l~~~-----~~~~p~~~~~~~~~~~~~~v~e~~~g~~~~~~   83 (155)
T cd05120          35 --GADREREVAILQLLARK-----GLPVPKVLASGESDGWSYLLMEWIEGETLDEV   83 (155)
T ss_pred             --hhHHHHHHHHHHHHHHc-----CCCCCeEEEEcCCCCccEEEEEecCCeecccC
Confidence              12346666666666654     345676654322  368999999999988754

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=95.99  E-value=0.052  Score=51.85  Aligned_cols=36  Identities=19%  Similarity=0.087  Sum_probs=29.6

Q ss_pred             ccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       284 F~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      |..+..+++|.|+.|+||+|+.+.+       |+.||||..+.
T Consensus         1 ~~~~~~~~lg~g~~~~vy~~~~~~~-------~~~~a~K~~~~   36 (272)
T cd06629           1 FKWVKGELIGKGTYGRVYLALNVTT-------GEMMAVKQVEL   36 (272)
T ss_pred             CceeecceecccCceEEEEEeecCC-------Cceeeeeeeec
Confidence            4567789999999999999997642       68999997654

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=95.94  E-value=0.013  Score=57.57  Aligned_cols=54  Identities=19%  Similarity=0.204  Sum_probs=40.6

Q ss_pred             eEeCcccCCCCCCCeEEeecccCccccchhHHhhhchhhHHHHHHHHHHHHHHhhhccCCCC
Q 012848          394 VSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVPYLNN  455 (455)
Q Consensus       394 V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~l~~~~~~~~~LA~~g~~aflkmlf~dgFv~  455 (455)
                      +..-+..+.+++..||+|||+||++++++.+ +      .+.++..+.+ .+++|..+||+|
T Consensus       105 l~~ekk~~~~~~~~~ll~EYIeG~~l~d~~~-i------~e~~~~ki~~-~ikqlH~~G~~H  158 (229)
T PF06176_consen  105 LAAEKKIFRYTSSYVLLMEYIEGVELNDIED-I------DEDLAEKIVE-AIKQLHKHGFYH  158 (229)
T ss_pred             eeeeeeeccceeEEEEEEEEecCeecccchh-c------CHHHHHHHHH-HHHHHHHcCCcc
Confidence            4444556788999999999999999998642 1      2245555554 589999999998

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=95.88  E-value=0.04  Score=53.02  Aligned_cols=38  Identities=24%  Similarity=0.295  Sum_probs=28.5

Q ss_pred             hHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          280 LSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       280 ~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      +.+.|..+  +.|++|..|+||+|+...+       |+.||||+...
T Consensus         2 ~~~~y~~~--~~l~~g~~~~vy~~~~~~~-------~~~vaiK~~~~   39 (277)
T cd06642           2 PEELFTKL--ERIGKGSFGEVYKGIDNRT-------KEVVAIKIIDL   39 (277)
T ss_pred             hHHHHHHH--HHhcCCCCeeEEEEEEcCC-------CeEEEEEEecc
Confidence            34555533  5689999999999998652       68999998643

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=95.69  E-value=0.035  Score=58.61  Aligned_cols=24  Identities=33%  Similarity=0.362  Sum_probs=22.4

Q ss_pred             ccccCcceEEEeEecccCCCCCcCCeEEEEE
Q 012848          292 VASGSIAQVHRASLRFRYPGQKVKPIVVAVK  322 (455)
Q Consensus       292 iASASIAQVHrA~Lk~~~~G~~~~G~~VAVK  322 (455)
                      ||.||-|=||+|+.+..       |.+||||
T Consensus        18 iG~GsfavVykg~h~~~-------~~~VAIK   41 (429)
T KOG0595|consen   18 IGSGSFAVVYKGRHKKS-------GTEVAIK   41 (429)
T ss_pred             ccCcceEEEEEeEeccC-------CceEEee
Confidence            99999999999999873       6999999

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=95.68  E-value=0.044  Score=53.79  Aligned_cols=116  Identities=11%  Similarity=0.011  Sum_probs=64.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.++.|+.|.||+|+.+..       ++.|+||+..++..       .                   .....+      
T Consensus         6 ~~~l~~g~~~~v~~~~~~~~-------~~~v~ik~~~~~~~-------~-------------------~~~~~~------   46 (305)
T cd05609           6 IKLISNGAYGAVYLVRHKET-------RQRFAMKKINKQNL-------I-------------------LRNQIQ------   46 (305)
T ss_pred             eeEeecCCCeeEEEEEECCC-------CcEEEEEEeehhhh-------h-------------------hHHHHH------
Confidence            46789999999999998752       68999997544310       0                   000000      


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCC--eEEeecccCccccchhHHhhh-chhhHHHHHHHHHHHHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPA--VLVETYEQGECVSRYVDELQG-HERLKSALAHIGTHALL  445 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~r--VLVmE~i~G~~i~~~~~~l~~-~~~~~~~LA~~g~~afl  445 (455)
                          ++.+|...+.+.     +.+  .+++++..++++.  +|||||++|..+.+++..... .......++..++. -+
T Consensus        47 ----~~~~e~~~l~~~-----~~~--~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~-~l  114 (305)
T cd05609          47 ----QVFVERDILTFA-----ENP--FVVSMFCSFETKRHLCMVMEYVEGGDCATLLKNIGALPVDMARMYFAETVL-AL  114 (305)
T ss_pred             ----HHHHHHHHHHhC-----CCC--CeeeeEEEEecCCEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH-HH
Confidence                223344333322     122  3455665556665  899999999988877643111 11112223333333 23


Q ss_pred             HhhhccCCCC
Q 012848          446 KMLLVPYLNN  455 (455)
Q Consensus       446 kmlf~dgFv~  455 (455)
                      +-|...|++|
T Consensus       115 ~~lH~~~i~H  124 (305)
T cd05609         115 EYLHNYGIVH  124 (305)
T ss_pred             HHHHHCCccc
Confidence            4455677776

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=95.60  E-value=0.11  Score=49.11  Aligned_cols=31  Identities=26%  Similarity=0.298  Sum_probs=25.5

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.|+.|+.|+||+|+.+.+       |+.||||+.+..
T Consensus         1 ~~lg~g~~g~vy~~~~~~~-------~~~~a~k~~~~~   31 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRAD-------NTPVAVKSCRET   31 (252)
T ss_pred             CccCcccCccEEEEEEecC-------CceEEEEecCcc
Confidence            4689999999999999752       689999986544

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=95.56  E-value=0.11  Score=52.89  Aligned_cols=132  Identities=19%  Similarity=0.140  Sum_probs=77.0

Q ss_pred             ccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHH
Q 012848          286 GFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFA  365 (455)
Q Consensus       286 ~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~  365 (455)
                      .+- ++||.|==+-||.|...+        |.+||||.-|-| +..++.=-..-..   +.+.- ...|+.+.-...   
T Consensus        94 ~iG-~~IGvGKEsdVY~~~~~~--------g~~~~vKfHR~G-rtsFrkvk~~R~y---~~~~~-h~sWl~~sRl~A---  156 (304)
T COG0478          94 AIG-TKIGVGKESDVYVAIDPK--------GRKVAVKFHRLG-RTSFRKVKRNRDY---LADKE-HGSWLYVSRLAA---  156 (304)
T ss_pred             hhc-cccccCccceEEEEECCC--------CCEEEEEEeecC-chhhhhhcchhhh---hcccc-CcchhhhHHHHH---
Confidence            344 889999999999998864        799999999988 3333221111111   11111 123443322111   


Q ss_pred             HHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccchhHHhhhchhhHHHHHHHHHHHHH
Q 012848          366 VFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALL  445 (455)
Q Consensus       366 ~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~l~~~~~~~~~LA~~g~~afl  445 (455)
                               .+|-..|.++.     ...+.||+|+  --++++.|||+++|.++.+.-.    .....+++...+++.+-
T Consensus       157 ---------~rEf~~L~~L~-----~~G~~VP~P~--~~nRHaVvMe~ieG~eL~~~r~----~~en~~~il~~il~~~~  216 (304)
T COG0478         157 ---------EREFEALQRLY-----PEGVKVPKPI--AWNRHAVVMEYIEGVELYRLRL----DVENPDEILDKILEEVR  216 (304)
T ss_pred             ---------HHHHHHHHHhh-----hcCCCCCCcc--ccccceeeeehcccceeecccC----cccCHHHHHHHHHHHHH
Confidence                     22333333332     2468999999  5789999999999999987521    11224556655555433


Q ss_pred             HhhhccCCCC
Q 012848          446 KMLLVPYLNN  455 (455)
Q Consensus       446 kmlf~dgFv~  455 (455)
                      +- .+-|.||
T Consensus       217 ~~-~~~GiVH  225 (304)
T COG0478         217 KA-YRRGIVH  225 (304)
T ss_pred             HH-HHcCccc
Confidence            33 3666665

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=95.56  E-value=0.072  Score=52.15  Aligned_cols=40  Identities=25%  Similarity=0.410  Sum_probs=28.3

Q ss_pred             cccccccCcceEEEeEecccCC---------CCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYP---------GQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~---------G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.||.|+.|.||+|+..++.+         -....+..||||+.+++.
T Consensus        10 ~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~   58 (304)
T cd05096          10 KEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDA   58 (304)
T ss_pred             eeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCC
Confidence            4679999999999998754210         001235689999998864

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=95.53  E-value=0.062  Score=58.36  Aligned_cols=116  Identities=16%  Similarity=0.115  Sum_probs=72.1

Q ss_pred             cccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHH
Q 012848          287 FEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAV  366 (455)
Q Consensus       287 fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~  366 (455)
                      ...+.||.|+-|.||+|+..         ++.+++|+..+.....-  ++                     ++.      
T Consensus       336 ~~~~~iG~G~~g~Vy~~~~~---------~~~~v~k~~~~~~~~~~--~~---------------------~~~------  377 (535)
T PRK09605        336 IPDHLIGKGAEADIKKGEYL---------GRDAVIKERVPKGYRHP--EL---------------------DER------  377 (535)
T ss_pred             CccceeccCCcEEEEEEeec---------CccceeEEEecccccch--hH---------------------HHH------
Confidence            34688999999999999874         35677787655321110  00                     000      


Q ss_pred             HHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccchhHHhhhchhhHHHHHHHHHHHHHH
Q 012848          367 FMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLK  446 (455)
Q Consensus       367 ~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~l~~~~~~~~~LA~~g~~aflk  446 (455)
                        ...-.+.+|++.+.++.     .+.+..|.++..-..+.+|||||++|.++.+++..       ...++..+.+ .+.
T Consensus       378 --~~~~~~~~E~~~l~~l~-----~~~i~~p~~~~~~~~~~~lv~E~~~g~~L~~~l~~-------~~~~~~~i~~-~L~  442 (535)
T PRK09605        378 --LRTERTRAEARLLSEAR-----RAGVPTPVIYDVDPEEKTIVMEYIGGKDLKDVLEG-------NPELVRKVGE-IVA  442 (535)
T ss_pred             --HHHHHHHHHHHHHHhhc-----ccCCCeeEEEEEeCCCCEEEEEecCCCcHHHHHHH-------HHHHHHHHHH-HHH
Confidence              00113567888887764     24566676665445678999999999999876531       2334444443 345


Q ss_pred             hhhccCCCC
Q 012848          447 MLLVPYLNN  455 (455)
Q Consensus       447 mlf~dgFv~  455 (455)
                      .+-..|++|
T Consensus       443 ~lH~~giiH  451 (535)
T PRK09605        443 KLHKAGIVH  451 (535)
T ss_pred             HHHhCCCcc
Confidence            566677776

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=95.45  E-value=0.052  Score=54.30  Aligned_cols=48  Identities=23%  Similarity=0.210  Sum_probs=35.6

Q ss_pred             HHHhCCChHhhccccc-cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          273 ERAFGRRLSEIFDGFE-EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       273 e~elG~~~~eiF~~fd-~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      ++|+++...++.+.+. .++||.|+.|+||+|+....       |+.||||+....
T Consensus         3 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~-------~~~vavK~~~~~   51 (343)
T cd07878           3 RQELNKTVWEVPERYQNLTPVGSGAYGSVCSAYDTRL-------RQKVAVKKLSRP   51 (343)
T ss_pred             HHHHhHHHhhhhhhhhhheecccCCCeEEEEEEECCC-------CCEEEEEEeCch
Confidence            4566655555555554 48999999999999997652       689999987644

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=95.37  E-value=0.073  Score=55.65  Aligned_cols=79  Identities=32%  Similarity=0.379  Sum_probs=55.5

Q ss_pred             ccccCcceEEEeEecccCCCCCcCCeE-EEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHHH
Q 012848          292 VASGSIAQVHRASLRFRYPGQKVKPIV-VAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMS  370 (455)
Q Consensus       292 iASASIAQVHrA~Lk~~~~G~~~~G~~-VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~~  370 (455)
                      +|+|+-|+||+|+.+         |+. ||||+..+.-..                           ++.          
T Consensus        49 iG~G~~g~V~~~~~~---------g~~~vavK~~~~~~~~---------------------------~~~----------   82 (362)
T KOG0192|consen   49 LGSGSFGTVYKGKWR---------GTDVVAVKIISDPDFD---------------------------DES----------   82 (362)
T ss_pred             cccCCceeEEEEEeC---------CceeEEEEEecchhcC---------------------------hHH----------
Confidence            999999999999996         467 999987765210                           000          


Q ss_pred             hcCHHHHHHHHHHHHHHhCCCCC-eEeCcccCCCCCC----CeEEeecccCccccchhHH
Q 012848          371 QVDLAREAAHLSRFIYNFRRWKD-VSFPKPVYPLVHP----AVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       371 ELDfr~EA~nl~rf~~~f~~~~~-V~vP~~~~~lst~----rVLVmE~i~G~~i~~~~~~  425 (455)
                      +-+|++|+.-+.+.     ++++ |.|.    ..|++    -.+||||++|-++.+++..
T Consensus        83 ~~~f~~E~~il~~l-----~HpNIV~f~----G~~~~~~~~~~iVtEy~~~GsL~~~l~~  133 (362)
T KOG0192|consen   83 RKAFRREASLLSRL-----RHPNIVQFY----GACTSPPGSLCIVTEYMPGGSLSVLLHK  133 (362)
T ss_pred             HHHHHHHHHHHHhC-----CCCCeeeEE----EEEcCCCCceEEEEEeCCCCcHHHHHhh
Confidence            34668888888762     2344 3443    34444    3699999999999988744

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=95.35  E-value=0.13  Score=49.78  Aligned_cols=46  Identities=24%  Similarity=0.237  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccchhHH
Q 012848          375 AREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       375 r~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~  425 (455)
                      ++||+.+.+.++.     .|.+|.+|.=-.....+|||||+|..+.|+++.
T Consensus        47 ~~Earil~~a~~~-----GV~~P~v~dvD~~~~~I~me~I~G~~lkd~l~~   92 (204)
T COG3642          47 RREARILAKAREA-----GVPVPIVYDVDPDNGLIVMEYIEGELLKDALEE   92 (204)
T ss_pred             HHHHHHHHHHHHc-----CCCCCeEEEEcCCCCEEEEEEeCChhHHHHHHh
Confidence            6799999988764     688888885556667799999999999987654

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=95.32  E-value=0.07  Score=51.41  Aligned_cols=36  Identities=28%  Similarity=0.397  Sum_probs=28.1

Q ss_pred             hHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEee
Q 012848          280 LSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVR  324 (455)
Q Consensus       280 ~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVq  324 (455)
                      ++++|..+.  .|++|..|-||+|+.+.       .|+.||||+.
T Consensus         2 ~~~~~~~~~--~ig~G~~~~vy~~~~~~-------~~~~~aiK~~   37 (277)
T cd06641           2 PEELFTKLE--KIGKGSFGEVFKGIDNR-------TQKVVAIKII   37 (277)
T ss_pred             HHHhhhhhe--eEeecCCeEEEEEEECC-------CCcEEEEEEe
Confidence            466776444  59999999999998764       2689999975

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=95.30  E-value=0.097  Score=52.88  Aligned_cols=31  Identities=23%  Similarity=0.120  Sum_probs=26.1

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.||.|+-|.||+|+.+.+       |+.||||+.+.+
T Consensus        80 ~~lg~G~~g~V~~~~~~~~-------~~~vaiK~~~~~  110 (353)
T PLN00034         80 NRIGSGAGGTVYKVIHRPT-------GRLYALKVIYGN  110 (353)
T ss_pred             hhccCCCCeEEEEEEECCC-------CCEEEEEEEecC
Confidence            6799999999999998752       689999997654

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=95.23  E-value=0.098  Score=50.39  Aligned_cols=36  Identities=25%  Similarity=0.385  Sum_probs=27.4

Q ss_pred             HhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          281 SEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       281 ~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      ++.|..+  +++++|..|+||+|+.+..       |+.||||+..
T Consensus         3 ~~~y~~~--~~lg~g~~~~vy~~~~~~~-------~~~vaiK~~~   38 (277)
T cd06640           3 EELFTKL--ERIGKGSFGEVFKGIDNRT-------QQVVAIKIID   38 (277)
T ss_pred             HHhhhhh--hhcccCCCeEEEEEEEccC-------CEEEEEEEEe
Confidence            4444433  5699999999999998652       6899999863

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=95.23  E-value=0.066  Score=50.89  Aligned_cols=31  Identities=19%  Similarity=0.129  Sum_probs=26.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+++++|+.|+||+|+.+.+       |++|||||..+
T Consensus         6 ~~~lg~g~~~~vy~~~~~~~-------~~~~~ik~~~~   36 (280)
T cd05581           6 GKIIGEGSFSTVVLAKEKET-------NKEYAIKILDK   36 (280)
T ss_pred             eeeecCCCceEEEEEEEcCC-------CCEEEEEEech
Confidence            46899999999999999752       69999999765

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=95.17  E-value=0.1  Score=52.04  Aligned_cols=31  Identities=26%  Similarity=0.180  Sum_probs=25.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+.|+||+|+.++.       |+.||||+...
T Consensus         6 ~~~ig~G~~g~Vy~~~~~~~-------~~~vaiK~~~~   36 (333)
T cd05600           6 LTQVGQGGYGQVFLAKKKDT-------GEIVALKRMKK   36 (333)
T ss_pred             EEEEeecCCeEEEEEEECCC-------CCEEEEEEEEH
Confidence            46789999999999998752       68999998653

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=95.15  E-value=0.11  Score=49.13  Aligned_cols=31  Identities=23%  Similarity=0.150  Sum_probs=25.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.++.|+.|+||+|...+        ++.+|||+...+
T Consensus         9 ~~~ig~g~~g~v~~~~~~~--------~~~~~~k~~~~~   39 (256)
T cd05112           9 VQEIGSGQFGLVWLGYWLE--------KRKVAIKTIREG   39 (256)
T ss_pred             EeeecCcccceEEEEEEeC--------CCeEEEEECCCC
Confidence            4679999999999998864        478999987654

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=95.10  E-value=0.21  Score=46.36  Aligned_cols=33  Identities=21%  Similarity=0.034  Sum_probs=27.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .++++.++.|+||+|+.+++       |+.|+||+.+..-
T Consensus         5 ~~~i~~g~~~~v~~~~~~~~-------~~~~~ik~~~~~~   37 (260)
T cd06606           5 GELLGRGSFGSVYLALDKDT-------GELMAVKSVELSG   37 (260)
T ss_pred             eeEeeecCceEEEEEEECCC-------CcEEEEEEeeccc
Confidence            47899999999999998752       6899999887654

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=94.98  E-value=0.085  Score=49.50  Aligned_cols=32  Identities=22%  Similarity=0.000  Sum_probs=26.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.|+.++.|+||+|+.+.+       |+.|+||+....
T Consensus         5 ~~~ig~g~~~~vy~~~~~~~-------~~~~~ik~~~~~   36 (258)
T cd06632           5 GELLGSGSFGSVYEGLNLDD-------GDFFAVKEVSLA   36 (258)
T ss_pred             cceeeecCCceEEEEEEcCC-------CcEEEEEEEEEc
Confidence            57899999999999998742       689999987543

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=94.96  E-value=0.14  Score=47.98  Aligned_cols=36  Identities=22%  Similarity=0.274  Sum_probs=27.9

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      +.+|.|+.|+||+|+..+.  + ...++.||+|+.+++.
T Consensus         5 ~~lg~g~~g~v~~~~~~~~--~-~~~~~~vaiK~~~~~~   40 (258)
T smart00219        5 KKLGEGAFGEVYKGTLKGL--S-GEKEVEVAVKTLKEDA   40 (258)
T ss_pred             ceeccCCCcceEEEEecCC--C-CCCCceEEEEEccCCC
Confidence            6789999999999999752  1 1235899999987763

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=94.93  E-value=0.18  Score=47.06  Aligned_cols=35  Identities=23%  Similarity=0.252  Sum_probs=27.3

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      +.||.|+.|+||+|+.....    ..+..|+||+.++..
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~----~~~~~~~ik~~~~~~   35 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKD----GKTTEVAVKTLKEDA   35 (262)
T ss_pred             CccccCCceEEEEEEEecCC----CCCceEEeEeecccc
Confidence            46899999999999997521    125899999988764

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=94.87  E-value=0.15  Score=47.08  Aligned_cols=34  Identities=21%  Similarity=0.171  Sum_probs=28.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVG  329 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~  329 (455)
                      .++++++..|+||+|+.+.       +|+.|++|+.+++..
T Consensus         5 ~~~l~~g~~~~v~~~~~~~-------~~~~~~~k~~~~~~~   38 (253)
T cd05122           5 LEKIGKGGFGEVYKARHKR-------TGKEVAIKVIKLESK   38 (253)
T ss_pred             eeeeccCCceEEEEEEECC-------CCcEEEEEEecccch
Confidence            4789999999999999975       268999999987643

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=94.86  E-value=0.35  Score=47.91  Aligned_cols=48  Identities=23%  Similarity=0.137  Sum_probs=38.0

Q ss_pred             HHHHHHhCCChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          270 KTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       270 ~vle~elG~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+...-++.++.+.|..  .++++.|+.|+||+|+.+++       |+.||||+...
T Consensus        13 ~~~~~~~~~~~~~~f~~--~~~lg~G~~~~v~~~~~~~~-------~~~valK~~~~   60 (317)
T cd06635          13 EIAELFFKEDPEKLFTD--LREIGHGSFGAVYFARDVRT-------NEVVAIKKMSY   60 (317)
T ss_pred             HHHHHhcCCCchhhhhh--hheeccCCCeEEEEEEEcCC-------CcEEEEEEEec
Confidence            45566678888888873  56799999999999998652       68999998643

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=94.81  E-value=0.14  Score=49.02  Aligned_cols=36  Identities=19%  Similarity=0.410  Sum_probs=27.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.|+.|+-|+||+|+++..  +  ..+..||+|+.+.+.
T Consensus        10 ~~~ig~G~fg~V~~~~~~~~--~--~~~~~vaik~~~~~~   45 (266)
T cd05064          10 ERILGTGRFGELCRGCLKLP--S--KRELPVAIHTLRAGC   45 (266)
T ss_pred             eeeecccCCCeEEEEEEecC--C--CceeeEEEEecCCCC
Confidence            35699999999999998642  1  236899999887653

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=94.79  E-value=0.11  Score=52.41  Aligned_cols=48  Identities=23%  Similarity=0.188  Sum_probs=35.6

Q ss_pred             HHHHhCCChHhhccccc-cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          272 IERAFGRRLSEIFDGFE-EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       272 le~elG~~~~eiF~~fd-~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      +++|++..+.++-..++ -++++.|.-|.||+|+.+.       .|+.||||+.+.
T Consensus         2 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~-------~~~~vavK~~~~   50 (343)
T cd07880           2 YRQEVNKTIWEVPDRYRDLKQVGSGAYGTVCSALDRR-------TGAKVAIKKLYR   50 (343)
T ss_pred             hhhhhhhhhhccccceEEEEEeeecCCeEEEEEEECC-------CCcEEEEEEecc
Confidence            45666666655555453 5789999999999999764       268999997654

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=94.76  E-value=0.2  Score=47.33  Aligned_cols=32  Identities=16%  Similarity=-0.068  Sum_probs=26.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.++.|+.|+||+|+..++       |++||||+.++.
T Consensus         7 ~~~lg~g~~~~vy~~~~~~~-------~~~~~lk~~~~~   38 (263)
T cd06625           7 GKLLGQGAFGRVYLCYDVDT-------GRELAVKQVPFD   38 (263)
T ss_pred             cceecCCCceEEEEEEEcCC-------CcEEEEEEEeec
Confidence            57899999999999997652       689999986644

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=94.59  E-value=0.23  Score=46.76  Aligned_cols=30  Identities=23%  Similarity=0.040  Sum_probs=25.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .++++.|..|+||+|...+       +|+.|+||+..
T Consensus         6 ~~~lg~g~~~~v~~~~~~~-------~~~~~~ik~~~   35 (267)
T cd06610           6 IEVIGVGATAVVYAAICLP-------NNEKVAIKRID   35 (267)
T ss_pred             eeeecCCCCeEEEEEEEcC-------CCcEEEEEEec
Confidence            4678999999999999865       26899999864

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=94.56  E-value=0.35  Score=51.44  Aligned_cols=113  Identities=20%  Similarity=0.047  Sum_probs=69.6

Q ss_pred             CCCHHHHHHHHHHHhCCChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHH
Q 012848          262 EHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINL  341 (455)
Q Consensus       262 p~~~~~v~~vle~elG~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~  341 (455)
                      ++.-+.+..-+.+..|.--  --+..+-+|++.|-+.+||+.++.+   |    ++.|+||...|.++.           
T Consensus         6 ~l~~~~v~~yl~~~~~~~~--~~~~~~~~elggGn~N~VyrV~~~~---g----~~svIVKqa~p~~r~-----------   65 (401)
T PRK09550          6 TLTEEDAVEYAALKLGLFD--PKALLTAREIGDGNLNLVFRVSDTE---G----GKSVIVKQALPYVRV-----------   65 (401)
T ss_pred             eCCHhHHHHHHHHhcCCCC--CcccceeeEcCCCceEEEEEEEeCC---C----CeEEEEEecCccccc-----------
Confidence            3444555556644434210  0133556899999999999999864   2    368999988776531           


Q ss_pred             HHHHHccccCccc-cCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCcccc
Q 012848          342 AAKISSVIPAVKW-LRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVS  420 (455)
Q Consensus       342 la~l~~~~P~l~~-l~l~e~v~ef~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~  420 (455)
                             .+. .| +.++    .          .+.|++.+..+.+.    ....+|++|.--....+|||||+++.++.
T Consensus        66 -------~g~-~wpl~~e----R----------~~~Eae~L~~l~~~----~p~~VPkV~~~D~~~~~lVME~L~~~~~l  119 (401)
T PRK09550         66 -------VGE-SWPLTLD----R----------ARIEAEALKIQAKY----VPDLVPKVYHYDEELAVTVMEDLSDHKIL  119 (401)
T ss_pred             -------ccc-cccccHH----H----------HHHHHHHHHHHHhh----CCCCCCeEEEECCCCCEEEEecCCCccHH
Confidence                   110 01 1111    1          15577777776643    33579999954445579999999986643

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=94.29  E-value=0.21  Score=51.23  Aligned_cols=29  Identities=17%  Similarity=0.107  Sum_probs=24.9

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      +.||.|+.|+||+|+.+.+       |+.||||+.+
T Consensus         7 ~~LG~G~~g~Vy~~~~~~~-------~~~~aiK~i~   35 (381)
T cd05626           7 KTLGIGAFGEVCLACKVDT-------HALYAMKTLR   35 (381)
T ss_pred             EEEeecCCEEEEEEEECCC-------CCEEEEEEEE
Confidence            5689999999999998752       6899999876

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=94.25  E-value=0.22  Score=47.39  Aligned_cols=38  Identities=24%  Similarity=0.232  Sum_probs=29.2

Q ss_pred             ChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          279 RLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       279 ~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      +++.+|+..  +.++.|+-|+||+|..++.       ++.||||+..
T Consensus         3 ~~~~~y~~~--~~lg~g~~g~vy~~~~~~~-------~~~~aik~~~   40 (272)
T cd06637           3 DPAGIFELV--ELVGNGTYGQVYKGRHVKT-------GQLAAIKVMD   40 (272)
T ss_pred             ChhhhhhHH--HheeecCCeEEEEEEEcCC-------CcEEEEEEEE
Confidence            455666533  5699999999999998752       6899999863

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=94.25  E-value=0.35  Score=45.06  Aligned_cols=32  Identities=16%  Similarity=0.006  Sum_probs=26.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+++++++.|+||+|+.++.       |+.|+||...+.
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~-------~~~~~ik~~~~~   36 (254)
T cd06627           5 GDLIGRGAFGVVYKGLNLET-------GDFVAIKQISLE   36 (254)
T ss_pred             eeEEcccCCeEEEEEEEcCC-------CcEEEEEEeccc
Confidence            47899999999999998752       689999987654

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=94.23  E-value=0.4  Score=45.41  Aligned_cols=29  Identities=28%  Similarity=0.301  Sum_probs=24.7

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      ++++.|+.|+||+|+.+..       |+.||||+.+
T Consensus         2 ~~l~~g~~~~v~~a~~~~~-------~~~vavK~~~   30 (260)
T cd05611           2 KPISKGAFGSVYLAKKRST-------GDYFAIKVLK   30 (260)
T ss_pred             ccCCcCCCeeEEEEEecCC-------CCeEEEEEec
Confidence            5789999999999998752       6899999865

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=94.23  E-value=0.26  Score=46.88  Aligned_cols=32  Identities=25%  Similarity=0.174  Sum_probs=26.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.++.|+.|+||+|+.+.+       |+.||||+.+..
T Consensus        14 ~~~lg~g~~g~vy~~~~~~~-------~~~~aik~~~~~   45 (267)
T cd06646          14 IQRVGSGTYGDVYKARNLHT-------GELAAVKIIKLE   45 (267)
T ss_pred             hheeecCCCeEEEEEEECCC-------CeEEEEEEEecC
Confidence            46789999999999998652       689999998654

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=94.22  E-value=0.19  Score=45.83  Aligned_cols=27  Identities=26%  Similarity=0.077  Sum_probs=21.7

Q ss_pred             CcceEEEeEecccCCCCCcCCeEEEEEeeCCCcc
Q 012848          296 SIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVG  329 (455)
Q Consensus       296 SIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~  329 (455)
                      +.|+||+|+.+.       .|+.||+|+.+.+..
T Consensus         1 ~~g~v~~~~~~~-------~~~~~~~k~~~~~~~   27 (244)
T smart00220        1 SFGKVYLARDKK-------TGKLVAIKVIKKEKI   27 (244)
T ss_pred             CceEEEEEEECC-------CCcEEEEEEeccccc
Confidence            468999999974       268999999887653

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=94.17  E-value=0.64  Score=44.09  Aligned_cols=32  Identities=25%  Similarity=0.088  Sum_probs=25.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      ...++.|+.|+||+|+....       |+.||||+....
T Consensus         5 ~~~ig~g~~~~v~~a~~~~~-------~~~~~~k~~~~~   36 (267)
T cd06628           5 GALIGSGSFGSVYLGMNASS-------GELMAVKQVELP   36 (267)
T ss_pred             cceeecCCCeEEEEEEecCC-------CcEEEEEEecCC
Confidence            36789999999999997642       689999976544

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=94.15  E-value=0.21  Score=50.71  Aligned_cols=94  Identities=18%  Similarity=0.159  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHhCCChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHH
Q 012848          265 FAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAK  344 (455)
Q Consensus       265 ~~~v~~vle~elG~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~  344 (455)
                      |..+.+.|.+.+|.+..    --+.+|++.|+|.++++-+- +        ++.+-||+..+.-...             
T Consensus         2 w~~i~~~~~~~~~~~~~----i~~~~~v~GG~i~~a~~~~~-~--------~~~~FvK~~~~~~~~~-------------   55 (288)
T PF03881_consen    2 WQAIEQQISEQLGADFK----ITSIEPVSGGDINEAYRLDT-D--------GGSYFVKVNSESGRDM-------------   55 (288)
T ss_dssp             HHHHHHHHHHHHTS---------EEEEE--SSSSEEEEEET-T--------S-EEEEEEEEGGGCCH-------------
T ss_pred             hHHHHHHHHHHhCCCCc----eeeeEecCCCChhheEEEEC-C--------CccEEEEecChhhHHH-------------
Confidence            56789999999998631    12368999999999999772 1        5899999887432111             


Q ss_pred             HHccccCccccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccC--CCCCCCeEEeecccCc
Q 012848          345 ISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY--PLVHPAVLVETYEQGE  417 (455)
Q Consensus       345 l~~~~P~l~~l~l~e~v~ef~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~--~lst~rVLVmE~i~G~  417 (455)
                                                   |..||+.++.+.+    ...+.||+|+.  ++.....|+|||++..
T Consensus        56 -----------------------------f~~Ea~gL~~L~~----~~~~~vP~vi~~G~~~~~~fLlle~l~~~   97 (288)
T PF03881_consen   56 -----------------------------FEGEAEGLKALAE----ANPIRVPKVIAWGEYDDDAFLLLEFLEMG   97 (288)
T ss_dssp             -----------------------------HHHHHHHHHHHCH----TTTSBS--EEEEEE-SSCCEEEEE-----
T ss_pred             -----------------------------HHHHHHHHHHHHh----cCCCCCCeEEEEEeecCCceEEEEeecCC
Confidence                                         3677878877654    34688999995  2345678999999987

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=94.13  E-value=0.52  Score=45.73  Aligned_cols=91  Identities=20%  Similarity=0.227  Sum_probs=53.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.++.|+-|.||+|+.++...|  ..+..||||+......                           ..          
T Consensus        11 ~~~lg~G~~g~Vy~~~~~~~~~~--~~~~~vavK~~~~~~~---------------------------~~----------   51 (288)
T cd05061          11 LRELGQGSFGMVYEGNARDIIKG--EAETRVAVKTVNESAS---------------------------LR----------   51 (288)
T ss_pred             eeeecCCCCcEEEEEEEeccCCC--CcceEEEEEECCCcCC---------------------------HH----------
Confidence            46799999999999987642222  1257899997543210                           00          


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCe-EeCcccCCCCCCCeEEeecccCccccchhHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDV-SFPKPVYPLVHPAVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V-~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~  425 (455)
                       .+.++.+|...+.++.     .+++ .+-..+ .-....+++|||++|.++.+++..
T Consensus        52 -~~~~~~~e~~~l~~l~-----~~~i~~~~~~~-~~~~~~~lv~e~~~~g~L~~~l~~  102 (288)
T cd05061          52 -ERIEFLNEASVMKGFT-----CHHVVRLLGVV-SKGQPTLVVMELMAHGDLKSYLRS  102 (288)
T ss_pred             -HHHHHHHHHHHHHhCC-----CCCeeeEEEEE-cCCCCcEEEEeCCCCCCHHHHHHH
Confidence             0112344544444332     1222 111111 234567999999999999988754

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=94.08  E-value=0.23  Score=49.64  Aligned_cols=32  Identities=16%  Similarity=0.250  Sum_probs=26.7

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      +.+|.|+-|+||+|+.+..       |..||+|+.+.+.
T Consensus        11 ~~lg~G~~g~V~~~~~~~~-------~~~~a~k~~~~~~   42 (331)
T cd06649          11 SELGAGNGGVVTKVQHKPS-------GLIMARKLIHLEI   42 (331)
T ss_pred             EeecCCCCEEEEEEEECCC-------CcEEEEEEeeccc
Confidence            5799999999999998752       6899999987643

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=94.02  E-value=0.53  Score=45.00  Aligned_cols=84  Identities=17%  Similarity=0.174  Sum_probs=51.0

Q ss_pred             cccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHHH
Q 012848          291 PVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMS  370 (455)
Q Consensus       291 PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~~  370 (455)
                      .|+.|+.|.||+|+..+.     ..+..||+|..+....                                      ...
T Consensus         2 ~lg~G~~g~Vy~~~~~~~-----~~~~~~~~k~~~~~~~--------------------------------------~~~   38 (269)
T cd05087           2 EIGNGWFGKVILGEVNSG-----YTPAQVVVKELRVSAS--------------------------------------VQE   38 (269)
T ss_pred             cccccCCceEEEEEEcCC-----CCceEEEEEecCCCCC--------------------------------------hHH
Confidence            578999999999998642     1247899996533210                                      011


Q ss_pred             hcCHHHHHHHHHHHHHHhCCCCCeEeCcccC--CCCCCCeEEeecccCccccchhH
Q 012848          371 QVDLAREAAHLSRFIYNFRRWKDVSFPKPVY--PLVHPAVLVETYEQGECVSRYVD  424 (455)
Q Consensus       371 ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~--~lst~rVLVmE~i~G~~i~~~~~  424 (455)
                      +.++.+|...+.++.     .+++  ++.+.  .-.+...+||||++|.++.+++.
T Consensus        39 ~~~~~~E~~~l~~l~-----h~~i--v~~~~~~~~~~~~~lv~e~~~~g~L~~~l~   87 (269)
T cd05087          39 QMKFLEEAQPYRSLQ-----HSNL--LQCLGQCTEVTPYLLVMEFCPLGDLKGYLR   87 (269)
T ss_pred             HHHHHHHHHHHHhCC-----CCCE--eeEEEEEcCCCCcEEEEECCCCCcHHHHHH
Confidence            234555665555442     2222  22221  22355789999999998887764

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=94.00  E-value=0.31  Score=46.30  Aligned_cols=111  Identities=17%  Similarity=0.164  Sum_probs=63.6

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHH
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMM  369 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~  369 (455)
                      +.++.|+-|+||+|+..+        +..||+|..+++-..                          ..           
T Consensus        12 ~~ig~g~~~~v~~~~~~~--------~~~~~~k~~~~~~~~--------------------------~~-----------   46 (260)
T cd05070          12 KKLGNGQFGEVWMGTWNG--------NTKVAVKTLKPGTMS--------------------------PE-----------   46 (260)
T ss_pred             heeccccCceEEEEEecC--------CceeEEEEecCCCCC--------------------------HH-----------
Confidence            569999999999998754        578999998875210                          00           


Q ss_pred             HhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccchhHHhhhc---hhhHHHHHHHHHHHHHH
Q 012848          370 SQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGH---ERLKSALAHIGTHALLK  446 (455)
Q Consensus       370 ~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~l~~~---~~~~~~LA~~g~~aflk  446 (455)
                         ++.+|..-+.++    ++..-+.+....  ......++|||++|..+.+++......   ......++..++.++- 
T Consensus        47 ---~~~~E~~~l~~l----~~~~i~~~~~~~--~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~-  116 (260)
T cd05070          47 ---SFLEEAQIMKKL----RHDKLVQLYAVV--SEEPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMA-  116 (260)
T ss_pred             ---HHHHHHHHHHhc----CCCceEEEEeEE--CCCCcEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH-
Confidence               134454444433    222223333332  234568999999999888765431111   1112345555555443 


Q ss_pred             hhhccCCCC
Q 012848          447 MLLVPYLNN  455 (455)
Q Consensus       447 mlf~dgFv~  455 (455)
                      .|-..|++|
T Consensus       117 ~lH~~~i~H  125 (260)
T cd05070         117 YIERMNYIH  125 (260)
T ss_pred             HHHHCCccc
Confidence            334556665

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=93.99  E-value=0.34  Score=45.36  Aligned_cols=29  Identities=21%  Similarity=0.246  Sum_probs=23.5

Q ss_pred             ccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          292 VASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       292 iASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +++|+.|+||+|+...+       |+.|++|+..+.
T Consensus         1 lg~g~~~~vy~~~~~~~-------~~~~~~k~~~~~   29 (265)
T cd05579           1 ISKGAYGRVFLAKKKST-------GDIYAIKVIKKA   29 (265)
T ss_pred             CCCCCceEEEEEEECCC-------CCEEEEEEecch
Confidence            57899999999998652       689999986553

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=93.94  E-value=0.37  Score=47.93  Aligned_cols=30  Identities=30%  Similarity=0.280  Sum_probs=24.7

Q ss_pred             cccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          291 PVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       291 PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .||.|+.|+||+|+.+..       |+.||||+..++
T Consensus         2 ~lG~G~~g~Vy~~~~~~~-------~~~~aiK~~~~~   31 (321)
T cd05591           2 VLGKGSFGKVMLAELKGT-------DEVYAIKVLKKD   31 (321)
T ss_pred             ccccCCCeEEEEEEECCC-------CCEEEEEEEeHH
Confidence            478999999999998752       689999987543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=93.86  E-value=0.33  Score=45.83  Aligned_cols=32  Identities=19%  Similarity=0.189  Sum_probs=26.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .++++.+.-|+||+|+.+..       |+.|++|+..+.
T Consensus        11 ~~~l~~g~~~~v~~~~~~~~-------~~~~~~k~~~~~   42 (275)
T cd06608          11 VEVIGEGTYGKVYKARHKKT-------GQLVAIKIMDII   42 (275)
T ss_pred             eeeecCCCCeEEEEEEECCC-------CcEEEEEEEecC
Confidence            47899999999999998752       689999997654

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=93.82  E-value=0.3  Score=49.03  Aligned_cols=33  Identities=18%  Similarity=0.240  Sum_probs=27.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.|+.|+-|+||+|+.+.       .|+.||+|+.+..+
T Consensus        10 ~~~lg~g~~g~V~~~~~~~-------~~~~~a~k~~~~~~   42 (333)
T cd06650          10 ISELGAGNGGVVFKVSHKP-------SGLIMARKLIHLEI   42 (333)
T ss_pred             eccccCCCCEEEEEEEECC-------CCcEEEEEEeeccc
Confidence            3578999999999999875       26899999887654

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>PRK09188 serine/threonine protein kinase; Provisional

Probab=93.69  E-value=0.48  Score=49.67  Aligned_cols=84  Identities=19%  Similarity=0.093  Sum_probs=54.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|..|+||+|..+..      .|+.||||+..+....                        .. .+..       
T Consensus        23 ~~~IG~G~fg~Vy~a~~~~~------~~~~vAiK~~~~~~~~------------------------~~-~~~~-------   64 (365)
T PRK09188         23 TAVLKRDVFSTVERGYFAGD------PGTARAVRRRVSEVPW------------------------WS-KPLA-------   64 (365)
T ss_pred             ccEEeecCcEEEEEEEEcCC------CCeEEEEEEecccccc------------------------cc-cHHH-------
Confidence            57799999999999987641      2588999987543210                        00 0000       


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCcccc
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVS  420 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~  420 (455)
                        +-.|.+|++.+.++.     .+.+ +|+.+.  .....|||||++|..+.
T Consensus        65 --~~~~~~E~~iL~~L~-----h~~i-v~~l~~--~~~~~LVmE~~~G~~L~  106 (365)
T PRK09188         65 --RHLAAREIRALKTVR-----GIGV-VPQLLA--TGKDGLVRGWTEGVPLH  106 (365)
T ss_pred             --HHHHHHHHHHHHhcc-----CCCC-CcEEEE--cCCcEEEEEccCCCCHH
Confidence              112577887777663     2232 555553  35679999999998875

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=93.69  E-value=0.4  Score=46.31  Aligned_cols=31  Identities=23%  Similarity=0.195  Sum_probs=26.1

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      ++++.|..|+||+|+.+.       .++.|++|+..+.
T Consensus        25 ~~l~~g~~~~v~~~~~~~-------~~~~~~iK~~~~~   55 (286)
T cd06614          25 EKIGEGASGEVYKATDRA-------TGKEVAIKKMRLR   55 (286)
T ss_pred             HhccCCCCeEEEEEEEcc-------CCcEEEEEEEecC
Confidence            689999999999999874       2589999987654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=93.53  E-value=0.62  Score=44.26  Aligned_cols=31  Identities=16%  Similarity=0.069  Sum_probs=24.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.|+.|+.|+||+|+..+        |+.||||+....
T Consensus         5 ~~~ig~g~~~~v~~~~~~~--------~~~~avk~~~~~   35 (265)
T cd06631           5 GEVLGKGAYGTVYCGLTNQ--------GQLIAVKQVELD   35 (265)
T ss_pred             cceEeccCCeEEEEEEEcC--------CCeEEEEEeecC
Confidence            4578999999999998643        689999976543

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=93.52  E-value=0.17  Score=48.68  Aligned_cols=29  Identities=24%  Similarity=0.227  Sum_probs=24.7

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      +.++.|+.|+||+|+.+..       |+.||+|+..
T Consensus        22 ~~lg~g~~~~v~~~~~~~~-------~~~~a~K~~~   50 (282)
T cd06636          22 EVVGNGTYGQVYKGRHVKT-------GQLAAIKVMD   50 (282)
T ss_pred             eeeccCCCeEEEEEEEcCC-------CcEEEEEEEe
Confidence            6799999999999998752       6899999853

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=93.48  E-value=0.41  Score=47.72  Aligned_cols=30  Identities=30%  Similarity=0.269  Sum_probs=25.1

Q ss_pred             cccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          291 PVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       291 PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .||.|+.|+||+|+.+.+       |+.||||+..++
T Consensus         2 ~lg~G~~g~V~~~~~~~~-------~~~~aiK~~~~~   31 (320)
T cd05590           2 VLGKGSFGKVMLARLKES-------GRLYAVKVLKKD   31 (320)
T ss_pred             eeeeCCCeEEEEEEEcCC-------CCEEEEEEEEHH
Confidence            578999999999998752       689999987653

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=93.47  E-value=0.47  Score=44.85  Aligned_cols=31  Identities=29%  Similarity=0.387  Sum_probs=26.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.|+.|.-|.||+|+.++        ++.||||+.+++
T Consensus        11 ~~~ig~g~~~~v~~~~~~~--------~~~~~vK~~~~~   41 (261)
T cd05034          11 ERKLGAGQFGEVWMGTWNG--------TTKVAVKTLKPG   41 (261)
T ss_pred             eeeeccCcceEEEEEEEcC--------CceEEEEEecCC
Confidence            3689999999999999764        478999988764

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=93.44  E-value=0.22  Score=49.72  Aligned_cols=30  Identities=20%  Similarity=0.153  Sum_probs=25.3

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      +.||.|+-|+||+|+.+.+       |+.||||+.+.
T Consensus         7 ~~lg~G~~g~Vy~~~~~~~-------~~~~aiK~~~~   36 (350)
T cd05573           7 KVIGRGAFGEVWLVRDKDT-------GQVYAMKVLRK   36 (350)
T ss_pred             EEEEeCCcEEEEEEEECCC-------CCEEEEEEEEH
Confidence            5689999999999998752       68999999763

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=93.41  E-value=0.33  Score=49.37  Aligned_cols=30  Identities=13%  Similarity=0.061  Sum_probs=25.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      -++||.|+.|.||+|+.+..       |+.||||+.+
T Consensus         6 ~~~lG~G~~g~V~~a~~~~~-------~~~~avK~~~   35 (376)
T cd05598           6 IKTIGIGAFGEVCLVRKVDT-------NALYAMKTLR   35 (376)
T ss_pred             EEEEEeCCCeEEEEEEECCC-------CCEEEEEEEc
Confidence            36799999999999998752       6899999875

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=93.39  E-value=0.26  Score=49.89  Aligned_cols=31  Identities=13%  Similarity=0.148  Sum_probs=26.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      -+.||.|+.|+||+|+.+..       |+.||||+.++
T Consensus         6 ~~~lG~G~~g~V~~~~~~~~-------~~~~aiK~~~~   36 (360)
T cd05627           6 LKVIGRGAFGEVRLVQKKDT-------GHIYAMKILRK   36 (360)
T ss_pred             EEEEeeCCCEEEEEEEECCC-------CCEEEEEEEEH
Confidence            36799999999999998752       68999998763

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=93.39  E-value=0.39  Score=46.13  Aligned_cols=31  Identities=16%  Similarity=0.245  Sum_probs=25.3

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.++.|+.|+||+|+.+.       .|+.||+|+.+..
T Consensus        11 ~~l~~g~~~~v~~~~~~~-------~~~~~~iK~~~~~   41 (280)
T cd06611          11 GELGDGAFGKVYKAQHKE-------TGLFAAAKIIQIE   41 (280)
T ss_pred             HHhcCCCCceEEEEEEcC-------CCcEEEEEEEeeC
Confidence            458899999999999864       2689999987543

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=93.33  E-value=0.66  Score=44.19  Aligned_cols=36  Identities=33%  Similarity=0.514  Sum_probs=27.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.++.|+.|.||+|+.+..  +  .+...||||+.+++.
T Consensus         9 ~~~lg~g~~g~vy~~~~~~~--~--~~~~~vaik~~~~~~   44 (266)
T cd05033           9 EKVIGGGEFGEVCRGRLKLP--G--KKEIDVAIKTLKAGS   44 (266)
T ss_pred             eeEecCCccceEEEEEEccC--C--CCcceEEEEEcCCCC
Confidence            57889999999999999752  1  124689999987653

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=93.29  E-value=0.65  Score=44.38  Aligned_cols=91  Identities=19%  Similarity=0.266  Sum_probs=53.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.+|.|+-|+||+|+.++.  .+...++.||||+.......                            +..       
T Consensus        10 ~~~lg~g~~~~v~~~~~~~~--~~~~~~~~vaiK~~~~~~~~----------------------------~~~-------   52 (280)
T cd05049          10 KRELGEGAFGKVFLGECYHL--EPENDKELVAVKTLKETASN----------------------------DAR-------   52 (280)
T ss_pred             HhhccccCCceEeeeeeccc--cCcCCcceEEEEeecccCCH----------------------------HHH-------
Confidence            36789999999999998652  11223589999975432110                            011       


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCC-eEeCcccCCCCCCCeEEeecccCccccchhHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKD-VSFPKPVYPLVHPAVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~-V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~  425 (455)
                         -++.+|++.++++.     .++ +.+... .......+++|||++|.++.+++..
T Consensus        53 ---~~~~~e~~~l~~l~-----~~~i~~~~~~-~~~~~~~~lv~e~~~~~~L~~~i~~  101 (280)
T cd05049          53 ---KDFEREAELLTNFQ-----HENIVKFYGV-CTEGDPPIMVFEYMEHGDLNKFLRS  101 (280)
T ss_pred             ---HHHHHHHHHHHhcC-----CCCchheeeE-EecCCCeEEEEecCCCCCHHHHHHh
Confidence               13355655555442     111 111111 1123567999999999999887653

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=93.25  E-value=0.5  Score=44.37  Aligned_cols=30  Identities=23%  Similarity=0.275  Sum_probs=24.2

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      ++++.|.-|.||+|...+        |+.|+||+....
T Consensus         1 ~~lg~g~~g~v~~~~~~~--------~~~v~~K~~~~~   30 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKG--------NTEVAVKTCRST   30 (251)
T ss_pred             CccccCCCceEEEEEEeC--------CCcEEEEecccc
Confidence            368899999999999864        589999976543

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=93.14  E-value=0.62  Score=44.13  Aligned_cols=31  Identities=26%  Similarity=0.327  Sum_probs=25.1

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      -+.++.|+-|.||+|...+        ++.||||...++
T Consensus        11 ~~~lg~g~~g~v~~~~~~~--------~~~v~iK~~~~~   41 (261)
T cd05072          11 VKKLGAGQFGEVWMGYYNN--------STKVAVKTLKPG   41 (261)
T ss_pred             eeecCCcCCceEEEEEecC--------CceEEEEEccCC
Confidence            3678999999999999754        578999987653

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=93.14  E-value=0.41  Score=47.96  Aligned_cols=31  Identities=19%  Similarity=0.157  Sum_probs=26.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+.+.
T Consensus        23 ~~~lg~G~~g~V~~~~~~~~-------~~~~aiK~~~~   53 (329)
T PTZ00263         23 GETLGTGSFGRVRIAKHKGT-------GEYYAIKCLKK   53 (329)
T ss_pred             EEEEEecCCeEEEEEEECCC-------CCEEEEEEEEH
Confidence            47899999999999998752       68999999753

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=93.13  E-value=0.58  Score=46.65  Aligned_cols=32  Identities=16%  Similarity=0.119  Sum_probs=24.8

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      +.||.|+.|.||+++...+    ...|+.||||+.+
T Consensus         2 ~~lg~G~~g~V~~~~~~~~----~~~~~~~avK~~~   33 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTG----ADTGKIFAMKVLK   33 (323)
T ss_pred             ceeeecCCeEEEEEEEccc----CCCCCEEEEEEEE
Confidence            4689999999999987531    1236899999875

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=93.12  E-value=0.8  Score=43.85  Aligned_cols=32  Identities=25%  Similarity=0.226  Sum_probs=26.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.++.+..|+||+|+.+.+       |+.||||+.+.+
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~-------~~~~~iK~~~~~   36 (284)
T cd07836           5 LEKLGEGTYATVYKGRNRTT-------GEIVALKEIHLD   36 (284)
T ss_pred             eeeeccCCceEEEEEEECCC-------CeEEEEEEeccc
Confidence            46789999999999998752       689999988654

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=93.08  E-value=0.78  Score=43.53  Aligned_cols=30  Identities=20%  Similarity=0.219  Sum_probs=25.0

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.+++|..|.||+|..++        |+.||||+.+++
T Consensus        12 ~~ig~G~~g~v~~~~~~~--------~~~~a~K~~~~~   41 (260)
T cd05067          12 KKLGAGQFGEVWMGYYNG--------HTKVAIKSLKQG   41 (260)
T ss_pred             eeeccCccceEEeeecCC--------CceEEEEEecCC
Confidence            569999999999999764        589999987643

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=93.07  E-value=0.64  Score=44.92  Aligned_cols=31  Identities=26%  Similarity=0.253  Sum_probs=25.7

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.|+.|.-|+||+|....+       |+.||+|+...+
T Consensus        11 ~~ig~g~~g~v~~~~~~~~-------~~~~a~k~~~~~   41 (284)
T cd06620          11 SDLGAGNGGSVSKVKHIPT-------GTVMAKKVVHIG   41 (284)
T ss_pred             HHcCCCCCeEEEEEEEcCC-------CcEEEEEEEEec
Confidence            5788999999999998652       689999987654

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>PLN02756 S-methyl-5-thioribose kinase

Probab=93.04  E-value=0.94  Score=48.48  Aligned_cols=107  Identities=14%  Similarity=0.043  Sum_probs=65.1

Q ss_pred             CCCCCHHHHHHHHHHH------hCCChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchH
Q 012848          260 APEHSFAYTKKTIERA------FGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIR  333 (455)
Q Consensus       260 vpp~~~~~v~~vle~e------lG~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~  333 (455)
                      ..+.+.+.+..-+.+.      +|..    +...+-++++-|.+..||+=+..         +..|+||...|+++.   
T Consensus         6 y~~l~~~~l~~yl~~~~~~~~~l~g~----~~~l~~~eiggGn~N~VyrV~~~---------~~svVVKqa~p~~r~---   69 (418)
T PLN02756          6 FRPLDEKSLVEYIKATPALSSKIGND----LDDLKIKEVGDGNLNFVYIVVSS---------SGSFVIKQALPYIRC---   69 (418)
T ss_pred             cccCCHHHHHHHHHHccchhhhcCCC----CCCceEEEcCCCceeeEEEEEcC---------CccEEEEeCCccccC---
Confidence            3445555555555444      3321    23456789999999999995431         357999999988741   


Q ss_pred             hHHHHHHHHHHHHccccCccc-cCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEee
Q 012848          334 RDFVIINLAAKISSVIPAVKW-LRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVET  412 (455)
Q Consensus       334 ~DL~il~~la~l~~~~P~l~~-l~l~e~v~ef~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE  412 (455)
                                      ++-.| ++++   ++           ..|++.+....+.    ..+.||++|.--....|++||
T Consensus        70 ----------------vga~wpl~~~---R~-----------~~Ea~aL~~~~~~----~p~~VPkVy~~ded~~vlvME  115 (418)
T PLN02756         70 ----------------IGESWPMTKE---RA-----------YFEATALREHGRL----CPDHVPEVYHFDRTMALIGMR  115 (418)
T ss_pred             ----------------CCccccCCcc---HH-----------HHHHHHHHHhhhc----CCCCCCeEEEECCCCCEEEEe
Confidence                            11112 1111   11           3345555544432    347899999533455999999


Q ss_pred             cccC
Q 012848          413 YEQG  416 (455)
Q Consensus       413 ~i~G  416 (455)
                      |++|
T Consensus       116 ~L~~  119 (418)
T PLN02756        116 YLEP  119 (418)
T ss_pred             ecCC
Confidence            9999

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=93.03  E-value=0.61  Score=43.72  Aligned_cols=30  Identities=20%  Similarity=0.166  Sum_probs=24.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.++.|..|+||+|+.+.+       |+.|++|...
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~-------~~~~~~k~~~   34 (256)
T cd08529           5 LNKIGKGSFGVVFKVVRKAD-------KRVYAMKQID   34 (256)
T ss_pred             eEEecCCCCeEEEEEEEcCC-------CcEEEEEEee
Confidence            35689999999999999752       6899999753

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=93.01  E-value=0.47  Score=47.26  Aligned_cols=30  Identities=23%  Similarity=0.218  Sum_probs=25.2

Q ss_pred             cccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          291 PVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       291 PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .||.|+-|.||+|+.+..       |+.||||+.+.+
T Consensus         2 ~lG~G~~g~Vy~~~~~~~-------~~~vaiK~~~~~   31 (316)
T cd05592           2 VLGKGSFGKVMLAELKGT-------NEFFAIKALKKD   31 (316)
T ss_pred             eeeeCCCeEEEEEEECCC-------CCEEEEEEEEHH
Confidence            578999999999998752       689999997754

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=93.01  E-value=0.78  Score=43.80  Aligned_cols=32  Identities=31%  Similarity=0.404  Sum_probs=24.8

Q ss_pred             ccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          292 VASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       292 iASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      ||.|+-|.||+|+++..     .+|..||||+..++.
T Consensus         3 ig~G~~g~v~~~~~~~~-----~~~~~vavk~~~~~~   34 (257)
T cd05115           3 LGSGNFGCVKKGVYKMR-----KKQIDVAIKVLKNEN   34 (257)
T ss_pred             cCCCCcccEEEEEEecC-----CCceeEEEEEccccc
Confidence            78999999999988632     125789999887653

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=92.96  E-value=0.72  Score=43.84  Aligned_cols=30  Identities=23%  Similarity=0.354  Sum_probs=25.1

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      ..|+.|+-|+||+|+...        +..||+|+.+++
T Consensus        12 ~~ig~g~~~~v~~~~~~~--------~~~~~lK~~~~~   41 (260)
T cd05069          12 VKLGQGCFGEVWMGTWNG--------TTKVAIKTLKPG   41 (260)
T ss_pred             eeecCcCCCeEEEEEEcC--------CceEEEEEcccC
Confidence            579999999999998864        357999998775

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=92.90  E-value=0.94  Score=42.55  Aligned_cols=33  Identities=18%  Similarity=0.079  Sum_probs=27.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.++.++.|.||+|+.+..       |+.|+||+.+++.
T Consensus         6 ~~~i~~g~~~~v~~~~~~~~-------~~~~~vk~~~~~~   38 (264)
T cd06623           6 VKVLGQGSSGVVYKVRHKPT-------GKIYALKKIHVDG   38 (264)
T ss_pred             eeeeeecCCeEEEEEEEcCC-------CcEEEEEEeccCc
Confidence            37899999999999999752       6899999876643

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=92.80  E-value=0.82  Score=43.08  Aligned_cols=36  Identities=31%  Similarity=0.284  Sum_probs=27.0

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcc
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVG  329 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~  329 (455)
                      +.|++|+-|.||+|...++ .|   .+..||||+..++..
T Consensus         1 ~~ig~g~~~~v~~~~~~~~-~~---~~~~vaiK~~~~~~~   36 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTS-GG---KVIPVAVKCLKSDKL   36 (257)
T ss_pred             CcCCccCcccEEeeeEecC-CC---CceEEEEeecCCccc
Confidence            3689999999999998652 11   235799998877654

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=92.76  E-value=1.3  Score=41.84  Aligned_cols=32  Identities=16%  Similarity=0.050  Sum_probs=25.8

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.++.++.|+||+|+.+.+       |+.||+|+.++.
T Consensus         5 ~~~lg~g~~~~v~~~~~~~~-------~~~~alk~~~~~   36 (268)
T cd06630           5 GQQLGTGAFSSCYQARDVKT-------GTLMAVKQVTYV   36 (268)
T ss_pred             cceecCcCceEEEEEEEcCC-------CcEEEEEEeecc
Confidence            46789999999999987542       689999987644

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=92.75  E-value=0.43  Score=48.75  Aligned_cols=30  Identities=17%  Similarity=0.076  Sum_probs=25.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      -+.||.|+.|+||+|+.+..       |+.||||+.+
T Consensus         6 ~~~LG~G~~g~Vy~a~~~~~-------~~~~aiK~i~   35 (382)
T cd05625           6 IKTLGIGAFGEVCLARKVDT-------KALYAMKTLR   35 (382)
T ss_pred             EEEEEeCCCEEEEEEEECCC-------CCEEEEEEEe
Confidence            35689999999999998752       6899999864

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=92.73  E-value=0.63  Score=44.03  Aligned_cols=30  Identities=33%  Similarity=0.436  Sum_probs=24.5

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.++.|.-|.||+|+.++        +..||+|+...+
T Consensus        10 ~~lg~G~~~~vy~~~~~~--------~~~~a~K~~~~~   39 (256)
T cd05114          10 KELGSGQFGVVHLGKWRA--------QIKVAIKAINEG   39 (256)
T ss_pred             eEecCCcCceEEEEEecc--------CceEEEEecccC
Confidence            569999999999999875        468999976544

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=92.72  E-value=0.98  Score=42.93  Aligned_cols=36  Identities=31%  Similarity=0.578  Sum_probs=27.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.++.|+.|+||+|+++.+  |  .++..|+||+.+++.
T Consensus        10 ~~~lg~g~~g~vy~~~~~~~--~--~~~~~~~ik~~~~~~   45 (268)
T cd05063          10 QKVIGAGEFGEVFRGILKMP--G--RKEVAVAIKTLKPGY   45 (268)
T ss_pred             eeEecCCCCccEEEEEEecC--C--CCceEEEEEeccccC
Confidence            57899999999999999752  3  123589999887663

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=92.48  E-value=0.53  Score=43.97  Aligned_cols=29  Identities=21%  Similarity=0.162  Sum_probs=23.9

Q ss_pred             ccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          292 VASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       292 iASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +|.|..|+||+++...       .|+.||||+.+.+
T Consensus         1 lg~G~~~~v~~~~~~~-------~~~~~~~k~~~~~   29 (250)
T cd05123           1 LGKGSFGKVLLVRKKD-------TGKLYAMKVLKKK   29 (250)
T ss_pred             CCCCCceEEEEEEECC-------CCcEEEEEEeehh
Confidence            5789999999999864       2689999987665

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=92.40  E-value=0.49  Score=47.41  Aligned_cols=29  Identities=14%  Similarity=0.117  Sum_probs=24.4

Q ss_pred             cccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          291 PVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       291 PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .||.|+-|+||+|+-+.       .|+.||||+..+
T Consensus         2 ~lG~G~~g~Vy~~~~~~-------~~~~~avK~~~~   30 (328)
T cd05593           2 LLGKGTFGKVILVREKA-------SGKYYAMKILKK   30 (328)
T ss_pred             eeeeCCCEEEEEEEECC-------CCCEEEEEEEEH
Confidence            57899999999999865       269999999764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=92.38  E-value=0.8  Score=43.49  Aligned_cols=37  Identities=30%  Similarity=0.328  Sum_probs=25.3

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      ..+|.|+.|.||+|+.++.. .....++.||||....+
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~-~~~~~~~~~~iK~~~~~   37 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDIL-GPGSGPIRVAVKTLRKG   37 (269)
T ss_pred             CccccccceeEEeeeecccc-cCcccceeehhhhhhcc
Confidence            36899999999999987521 01123578999965443

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=92.34  E-value=0.41  Score=46.81  Aligned_cols=31  Identities=26%  Similarity=0.248  Sum_probs=25.8

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.|+.|+.|.||+|+.+.+       |+.||||+...
T Consensus         6 ~~~lg~G~~g~Vy~~~~~~~-------~~~~aiK~~~~   36 (291)
T cd05612           6 IKTVGTGTFGRVHLVRDRIS-------EHYYALKVMAI   36 (291)
T ss_pred             eeeeecCCCeEEEEEEEcCC-------CCEEEEEEEEH
Confidence            36799999999999998752       68999998753

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=92.27  E-value=0.75  Score=44.73  Aligned_cols=30  Identities=17%  Similarity=0.169  Sum_probs=24.6

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      +.|+.|+-|+||+|....       .|+.||||+...
T Consensus         6 ~~lg~G~~g~V~~~~~~~-------~~~~vavK~~~~   35 (285)
T cd05605           6 RVLGKGGFGEVCACQVRA-------TGKMYACKKLEK   35 (285)
T ss_pred             EEEecCCCeEEEEEEEcC-------CCceEEEEEEeh
Confidence            458999999999999764       268999998654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=92.22  E-value=1.2  Score=41.92  Aligned_cols=33  Identities=18%  Similarity=0.044  Sum_probs=27.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .++|+.|+.|.||+|+...       +|+.|+||+.+...
T Consensus         5 ~~~lg~G~~~~v~~~~~~~-------~~~~~~ik~~~~~~   37 (264)
T cd06626           5 GNKIGGGTFGKVYTAVNLD-------TGELMAVKEIRIQD   37 (264)
T ss_pred             eeEeecCCCcEEEEEEECC-------CCcEEEEEEEECcc
Confidence            3689999999999999864       26899999976553

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=92.22  E-value=0.63  Score=46.61  Aligned_cols=30  Identities=17%  Similarity=0.228  Sum_probs=25.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.||.|+-|+||+|+.+.+       |+.||||+.+
T Consensus         6 ~~~lG~G~~g~V~~~~~~~~-------~~~~aiK~~~   35 (331)
T cd05597           6 LKVIGRGAFGEVAVVKMKNT-------GQVYAMKILN   35 (331)
T ss_pred             EEEEEecCCeEEEEEEECCC-------CCEEEEEEEE
Confidence            36789999999999998752       6899999975

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=92.20  E-value=1.3  Score=42.48  Aligned_cols=36  Identities=22%  Similarity=0.125  Sum_probs=26.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.+++|..|.||+|+.+..   ....|+.||||+.+..
T Consensus         9 ~~~lg~g~~g~v~~~~~~~~---~~~~~~~v~iK~~~~~   44 (284)
T cd05081           9 IQQLGKGNFGSVELCRYDPL---QDNTGEVVAVKKLQHS   44 (284)
T ss_pred             eeeccCCCCceEEEEEecCC---cCCCCcEEEEEEeccC
Confidence            36799999999999987521   0123689999987654

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=92.18  E-value=0.64  Score=46.32  Aligned_cols=29  Identities=14%  Similarity=0.114  Sum_probs=24.4

Q ss_pred             cccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          291 PVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       291 PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .||.|+-|+||+|+.+.+       |+.||||+.++
T Consensus         2 ~lG~G~~g~Vy~~~~~~~-------~~~~aiK~~~~   30 (323)
T cd05571           2 LLGKGTFGKVILVREKAT-------GKYYAMKILKK   30 (323)
T ss_pred             eeeeCCCeEEEEEEECCC-------CCEEEEEEEEH
Confidence            578999999999998752       68999998764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=92.14  E-value=0.56  Score=44.51  Aligned_cols=31  Identities=26%  Similarity=0.324  Sum_probs=25.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.++.|.-|.||+|...+        ++.||||..+++
T Consensus        11 ~~~lg~g~~~~v~~~~~~~--------~~~v~iK~~~~~   41 (261)
T cd05068          11 LRKLGAGQFGEVWEGLWNN--------TTPVAVKTLKPG   41 (261)
T ss_pred             EEEecccCCccEEEEEecC--------CeEEEEEeeCCC
Confidence            3789999999999999753        578999987764

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=92.13  E-value=0.41  Score=47.64  Aligned_cols=29  Identities=14%  Similarity=0.117  Sum_probs=24.0

Q ss_pred             cccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          291 PVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       291 PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .||.|+-|+||+|+-+.       .|+.||||+..+
T Consensus         2 ~lG~G~~g~V~~~~~~~-------~~~~~a~K~~~~   30 (325)
T cd05594           2 LLGKGTFGKVILVKEKA-------TGRYYAMKILKK   30 (325)
T ss_pred             eeeeCCCEEEEEEEECC-------CCCEEEEEEEEH
Confidence            47899999999998764       268999998754

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=92.05  E-value=0.22  Score=57.17  Aligned_cols=123  Identities=17%  Similarity=0.224  Sum_probs=71.7

Q ss_pred             CChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhH--HHHHHHHHHHHccccCcccc
Q 012848          278 RRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRD--FVIINLAAKISSVIPAVKWL  355 (455)
Q Consensus       278 ~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~D--L~il~~la~l~~~~P~l~~l  355 (455)
                      .+.+++|+-++  -||-|-=|+||+++=+..       |+-+||||++|+....-+..  -.|++...    .-|.    
T Consensus        15 pdp~d~~ei~e--vig~Gtygkv~k~k~~~~-------~~~aa~kI~~~~~d~deEiE~eynil~~~~----~hpn----   77 (953)
T KOG0587|consen   15 PDPADIFEIIE--VIGNGTYGKVYKGRHVKT-------GQLAAIKIMDPTEDEEEEIELEYNMLKKYS----HHPN----   77 (953)
T ss_pred             CCCCCccEEEE--EEeeccceeEEEEeeeec-------CceeeeEeecCCccccHHHHHHHHHHHhcc----CCCC----
Confidence            45566665333  467788899999987752       69999999999975433222  22222211    1111    


Q ss_pred             CHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhC-CCCCeEeCcccCCCCCCCeEEeecccCccccchhHHhhhchhhHH
Q 012848          356 RLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFR-RWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKS  434 (455)
Q Consensus       356 ~l~e~v~ef~~~l~~ELDfr~EA~nl~rf~~~f~-~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~l~~~~~~~~  434 (455)
                                               ..+|.-.|. ..+  -.+.-+|       |||||+-|-+++|+++...++...-.
T Consensus        78 -------------------------v~~fyg~~~k~~~--~~~DqLW-------LVMEfC~gGSVTDLVKn~~g~rl~E~  123 (953)
T KOG0587|consen   78 -------------------------VATFYGAFIKKDP--GNGDQLW-------LVMEFCGGGSVTDLVKNTKGNRLKEE  123 (953)
T ss_pred             -------------------------cceEEEEEEEecC--CCCCeEE-------EEeeccCCccHHHHHhhhcccchhhH
Confidence                                     011111110 001  1222333       99999999999999987664433345


Q ss_pred             HHHHHHHHHHHHhhhcc
Q 012848          435 ALAHIGTHALLKMLLVP  451 (455)
Q Consensus       435 ~LA~~g~~aflkmlf~d  451 (455)
                      -+|.++-++++--+-.|
T Consensus       124 ~IaYI~re~lrgl~HLH  140 (953)
T KOG0587|consen  124 WIAYILREILRGLAHLH  140 (953)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            67888877776544333

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=92.04  E-value=1.1  Score=44.91  Aligned_cols=31  Identities=26%  Similarity=0.250  Sum_probs=25.6

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.||.|+.|+||+|+.+..       |+.||||+.+..
T Consensus         1 ~~lG~G~~g~V~~~~~~~~-------~~~~aiK~~~~~   31 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKN-------DQIYAMKVVKKE   31 (327)
T ss_pred             CeeeeCCCeEEEEEEECCC-------CCEEEEEEEEHH
Confidence            3589999999999998752       689999997643

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=92.03  E-value=0.47  Score=44.53  Aligned_cols=115  Identities=20%  Similarity=0.101  Sum_probs=64.3

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHH
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMM  369 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~  369 (455)
                      +.||+|+-|.||+|+.+.+       |+.||+|+.+..-...-..                               ... 
T Consensus         5 ~~lg~G~~g~v~~~~~~~~-------~~~~~~K~~~~~~~~~~~~-------------------------------~~~-   45 (260)
T PF00069_consen    5 KKLGSGGFGTVYKAKNKKN-------GQKVAVKIIDKSEIEEEER-------------------------------EEN-   45 (260)
T ss_dssp             EEEEEESSEEEEEEEETTT-------TEEEEEEEEESTTHHHHHH-------------------------------HHH-
T ss_pred             EEEEeCCCEEEEEEEECCC-------CeEEEEEEecccccccccc-------------------------------chh-
Confidence            5789999999999999762       6899999887653211100                               000 


Q ss_pred             HhcCHHHHHHHHHHHHHHhCCCCCe-EeCcccCCCCCCCeEEeecccCccccchhHHh-hhchhhHHHHHHHHHHHHHHh
Q 012848          370 SQVDLAREAAHLSRFIYNFRRWKDV-SFPKPVYPLVHPAVLVETYEQGECVSRYVDEL-QGHERLKSALAHIGTHALLKM  447 (455)
Q Consensus       370 ~ELDfr~EA~nl~rf~~~f~~~~~V-~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~l-~~~~~~~~~LA~~g~~aflkm  447 (455)
                           ..|++.++++.     .+.+ .+-.++ .-...-.++|||++|..+.+++... .-.......++..++++ +..
T Consensus        46 -----~~e~~~~~~l~-----~~~i~~~~~~~-~~~~~~~~v~~~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~-L~~  113 (260)
T PF00069_consen   46 -----IREIKILRRLR-----HPNIVQILDVF-QDDNYLYIVMEYCPGGSLQDYLQKNKPLSEEEILKIAYQILEA-LAY  113 (260)
T ss_dssp             -----HHHHHHHHHHT-----BTTBCHEEEEE-EESSEEEEEEEEETTEBHHHHHHHHSSBBHHHHHHHHHHHHHH-HHH
T ss_pred             -----hhhhhcccccc-----ccccccccccc-ccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence                 11555555552     2222 111111 1145556999999999888776521 11222234455555554 344


Q ss_pred             hhccCCCC
Q 012848          448 LLVPYLNN  455 (455)
Q Consensus       448 lf~dgFv~  455 (455)
                      |-..|.+|
T Consensus       114 Lh~~~i~H  121 (260)
T PF00069_consen  114 LHSKGIVH  121 (260)
T ss_dssp             HHHTTEEE
T ss_pred             cccccccc
Confidence            44445444

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=92.00  E-value=0.76  Score=43.42  Aligned_cols=33  Identities=18%  Similarity=0.169  Sum_probs=27.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.|+.|+-|.||+|..+.       .|+.|++|+...+.
T Consensus         6 ~~~ig~g~~~~v~~~~~~~-------~~~~~~ik~~~~~~   38 (265)
T cd06605           6 LGELGAGNSGVVSKVLHRP-------TGKIMAVKTIRLEI   38 (265)
T ss_pred             HHHhcCCCCeEEEEEEEcC-------CCcEEEEEEEeccc
Confidence            3578999999999999975       26899999877664

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=91.99  E-value=0.54  Score=46.77  Aligned_cols=31  Identities=23%  Similarity=0.247  Sum_probs=25.8

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.||.|+.|.||+|..+.+       |+.||||+.+++
T Consensus         5 ~~lg~G~~g~Vy~~~~~~~-------~~~~aiK~~~~~   35 (324)
T cd05589           5 AVLGRGHFGKVLLAEYKKT-------GELYAIKALKKG   35 (324)
T ss_pred             EEEeecCCEEEEEEEECCC-------CCEEEEEEEEHH
Confidence            5689999999999998752       689999997653

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=91.95  E-value=0.95  Score=43.28  Aligned_cols=28  Identities=32%  Similarity=0.316  Sum_probs=24.0

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEee
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVR  324 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVq  324 (455)
                      +.++++..|+||+|+.+.       .|+.||||+.
T Consensus         7 ~~lg~g~~~~v~~~~~~~-------~~~~~~ik~~   34 (274)
T cd06609           7 ECIGKGSFGEVYKAIDKR-------TNQVVAIKVI   34 (274)
T ss_pred             hhhcCCCCeEEEEEEECC-------CCeEEEEEEe
Confidence            568899999999999875       2699999986

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=91.92  E-value=1.1  Score=42.95  Aligned_cols=38  Identities=24%  Similarity=0.282  Sum_probs=25.2

Q ss_pred             ccccccCcceEEEeEecccCC-----CCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYP-----GQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~-----G~~~~G~~VAVKVqrPg  327 (455)
                      +.++.|.-|+||+|++....+     +....+.+|+||+..+.
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~   43 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPS   43 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChh
Confidence            357889999999999854210     01123467999987664

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=91.89  E-value=0.73  Score=46.44  Aligned_cols=47  Identities=23%  Similarity=0.253  Sum_probs=32.4

Q ss_pred             HHhCCChHhhccccc-cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          274 RAFGRRLSEIFDGFE-EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       274 ~elG~~~~eiF~~fd-~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      ++++..+.++=+.++ .++|++|+.|+||+|..+.+       |+.||||+...+
T Consensus         6 ~~~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~-------~~~vaiK~~~~~   53 (345)
T cd07877           6 QELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKT-------GLRVAVKKLSRP   53 (345)
T ss_pred             hhHHHHHhhccCceEEEEEeeecCCeEEEEEEEcCC-------CeEEEEEEecCc
Confidence            344443333333333 47999999999999987642       689999987664

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=91.88  E-value=0.81  Score=43.48  Aligned_cols=32  Identities=22%  Similarity=0.142  Sum_probs=26.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.++.|+.|+||+|+...+       |+.||||+.++.
T Consensus        14 ~~~lg~g~~~~v~~~~~~~~-------~~~~~ik~~~~~   45 (267)
T cd06645          14 IQRIGSGTYGDVYKARNVNT-------GELAAIKVIKLE   45 (267)
T ss_pred             HHHhCCCCCeEEEEEEEcCC-------CcEEEEEEEecC
Confidence            36789999999999988652       689999998654

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=91.80  E-value=1.1  Score=44.52  Aligned_cols=29  Identities=28%  Similarity=0.229  Sum_probs=24.4

Q ss_pred             cccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          291 PVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       291 PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .||.|+.|+||+|+.+.+       |+.||||+..+
T Consensus         2 ~lg~G~~g~V~~~~~~~~-------~~~vaiK~~~~   30 (323)
T cd05575           2 VIGKGSFGKVLLAKHKAD-------GKFYAVKVLQK   30 (323)
T ss_pred             eeeeCCCeEEEEEEECCC-------CCEEEEEEEEH
Confidence            578999999999998752       69999998654

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=91.72  E-value=0.84  Score=45.46  Aligned_cols=29  Identities=28%  Similarity=0.283  Sum_probs=24.3

Q ss_pred             cccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          291 PVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       291 PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .||.|+-|+||+|+-+.       +|+.||||+...
T Consensus         2 ~lG~G~~g~V~~~~~~~-------~~~~~aiK~~~~   30 (325)
T cd05604           2 VIGKGSFGKVLLAKRKL-------DGKCYAVKVLQK   30 (325)
T ss_pred             ceeeCCCeEEEEEEECC-------CCCEEEEEEEEH
Confidence            47899999999999865       269999998754

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=91.71  E-value=1.1  Score=42.16  Aligned_cols=31  Identities=26%  Similarity=0.231  Sum_probs=25.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.++.|+.|+||+|+.+.+       |+.||+|+.++
T Consensus         7 ~~~lg~g~~~~v~~~~~~~~-------~~~~~ik~~~~   37 (267)
T cd08224           7 EKKIGKGQFSVVYKAICLLD-------GRVVALKKVQI   37 (267)
T ss_pred             eeeeccCCceEEEEEEEcCC-------CCEEEEEEeec
Confidence            46799999999999999742       68999997653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=91.62  E-value=0.9  Score=45.34  Aligned_cols=29  Identities=14%  Similarity=0.114  Sum_probs=24.3

Q ss_pred             cccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          291 PVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       291 PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .||.|+-|+||+|+-+.       .|+.||+|+.++
T Consensus         2 ~lG~G~~g~Vy~~~~~~-------~~~~vaiK~~~~   30 (323)
T cd05595           2 LLGKGTFGKVILVREKA-------TGRYYAMKILRK   30 (323)
T ss_pred             eeeeCCCEEEEEEEECC-------CCCEEEEEEEEH
Confidence            47899999999999865       268999999764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=91.61  E-value=0.96  Score=45.35  Aligned_cols=31  Identities=26%  Similarity=0.241  Sum_probs=25.6

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.||.|+.|+||+|+.+.+       |+.||||+....
T Consensus         1 ~~lG~G~~g~V~~~~~~~~-------~~~~aiK~~~~~   31 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKT-------ERIYAMKVVKKE   31 (329)
T ss_pred             CeeeeCCCeEEEEEEECCC-------CCEEEEEEEEhh
Confidence            3689999999999998752       689999987653

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=91.61  E-value=1.1  Score=42.74  Aligned_cols=36  Identities=17%  Similarity=0.020  Sum_probs=27.9

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      +.++.|..|.||+|++.+..   ...|+.||||+..+.-
T Consensus        10 ~~ig~g~~~~v~~~~~~~~~---~~~~~~~avK~~~~~~   45 (284)
T cd05038          10 KQLGEGHFGKVELCRYDPLG---DNTGEQVAVKSLNHSG   45 (284)
T ss_pred             eeeccCCCeeEEEeeecCCC---CCCceEEEEEEecccc
Confidence            67899999999999986421   2246899999987653

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=91.59  E-value=1.7  Score=41.87  Aligned_cols=35  Identities=17%  Similarity=0.079  Sum_probs=25.5

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.++.|+.|+||.++.+..   ....|+.||||+.+.+
T Consensus        10 ~~lg~g~~g~v~~~~~~~~---~~~~~~~vaiK~~~~~   44 (283)
T cd05080          10 RVLGEGHFGKVSLYCYDPA---NDGTGEMVAVKTLKRE   44 (283)
T ss_pred             eecccCCCcEEEEeeEccc---cCCCCceEEEEEeccc
Confidence            5688999999998876421   1224689999987655

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=91.54  E-value=1.1  Score=44.54  Aligned_cols=32  Identities=19%  Similarity=0.146  Sum_probs=26.1

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+.       .|+.||||+.+.+
T Consensus         5 ~~~lg~G~~g~Vy~~~~~~-------~~~~~aiK~~~~~   36 (323)
T cd05616           5 LMVLGKGSFGKVMLAERKG-------TDELYAIKILKKD   36 (323)
T ss_pred             EEEEeeCCCeEEEEEEECC-------CCCEEEEEEEEHH
Confidence            3568999999999999865       2689999997653

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=91.52  E-value=0.86  Score=47.72  Aligned_cols=32  Identities=28%  Similarity=0.305  Sum_probs=26.8

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.+|+||-|-|+.|+-...       |+.|||||....
T Consensus        22 ~~~lG~GsfgkV~~a~~~~t-------~~~vAiKii~~~   53 (370)
T KOG0583|consen   22 GRTLGSGSFGKVKLAKHRLT-------GEKVAIKIIDRK   53 (370)
T ss_pred             eeeecCCCCeeEEEeeeccC-------CCeEEEEEechh
Confidence            57899999999999988652       699999986655

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=91.49  E-value=1.1  Score=42.43  Aligned_cols=31  Identities=32%  Similarity=0.353  Sum_probs=25.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.++.|+.|.||+|+.+.        +..+|||+..++
T Consensus         9 ~~~lg~G~~~~v~~~~~~~--------~~~~~iK~~~~~   39 (256)
T cd05059           9 LKELGSGQFGVVHLGKWRG--------KIDVAIKMIREG   39 (256)
T ss_pred             hhhhccCCCceEEEeEecC--------CccEEEEEeccC
Confidence            4678999999999998754        468999987654

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=91.43  E-value=1.3  Score=42.22  Aligned_cols=35  Identities=31%  Similarity=0.573  Sum_probs=26.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+-++.|.-|-||+|+++.+  |  ..+..||||+...+
T Consensus         9 ~~~lg~g~~g~vy~~~~~~~--~--~~~~~vaiK~~~~~   43 (269)
T cd05065           9 EEVIGAGEFGEVCRGRLKLP--G--KREIFVAIKTLKSG   43 (269)
T ss_pred             EeEecCCCCCeEEEEEEecC--C--CCceeEEEEEcCCC
Confidence            45689999999999999762  2  11357999987654

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=91.41  E-value=0.68  Score=45.38  Aligned_cols=36  Identities=31%  Similarity=0.286  Sum_probs=27.1

Q ss_pred             hHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEee
Q 012848          280 LSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVR  324 (455)
Q Consensus       280 ~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVq  324 (455)
                      +.+.++.+  ..|+.|+-|.||+|+...+       |+.||||+.
T Consensus        20 ~~~~~~~~--~~lg~g~~g~v~~~~~~~~-------~~~vaiK~~   55 (292)
T cd06658          20 PREYLDSF--IKIGEGSTGIVCIATEKHT-------GKQVAVKKM   55 (292)
T ss_pred             hHHHHhhh--hcccCCCCeEEEEEEECCC-------CCEEEEEEE
Confidence            34444444  5689999999999998642       689999975

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>PHA02988 hypothetical protein; Provisional

Probab=91.39  E-value=1.3  Score=43.43  Aligned_cols=31  Identities=3%  Similarity=0.106  Sum_probs=25.9

Q ss_pred             cccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          287 FEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       287 fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+...++.+.-+.||+|+..         |+.||||+.+.
T Consensus        23 ~~~~~i~~g~~~~v~~~~~~---------~~~vavK~~~~   53 (283)
T PHA02988         23 YTSVLIKENDQNSIYKGIFN---------NKEVIIRTFKK   53 (283)
T ss_pred             CCCeEEeeCCceEEEEEEEC---------CEEEEEEeccc
Confidence            34678999999999999983         58999998764

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=91.33  E-value=1.1  Score=44.49  Aligned_cols=32  Identities=19%  Similarity=0.143  Sum_probs=26.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+.|.||+|+.+..       |+.||||+.+++
T Consensus         5 ~~~lg~G~~g~Vy~~~~~~~-------~~~~avK~~~~~   36 (324)
T cd05587           5 LMVLGKGSFGKVMLAERKGT-------DELYAIKILKKD   36 (324)
T ss_pred             EEEEeeccCeEEEEEEECCC-------CCEEEEEEEEHH
Confidence            36789999999999998752       689999997653

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=91.29  E-value=1.1  Score=42.77  Aligned_cols=32  Identities=25%  Similarity=0.192  Sum_probs=26.6

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      +.++.|+.|+||+|+.+++       |+.||||+.++..
T Consensus         5 ~~l~~g~~~~vy~~~~~~~-------~~~~~~K~~~~~~   36 (287)
T cd07840           5 AQIGEGTYGQVYKARNKKT-------GELVALKKIRMEN   36 (287)
T ss_pred             EEeccCCCeEEEEEEECCC-------CeEEEEEEEeccc
Confidence            4678999999999998752       6899999988653

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=91.28  E-value=1.3  Score=43.79  Aligned_cols=27  Identities=22%  Similarity=0.272  Sum_probs=22.7

Q ss_pred             ccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          292 VASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       292 iASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      ||.|+.|.||+|+.+++       |+.||||+..
T Consensus         1 lg~G~~g~Vy~~~~~~~-------~~~~aiK~i~   27 (312)
T cd05585           1 IGKGSFGKVMQVRKRDT-------QRIYALKTIR   27 (312)
T ss_pred             CCcCCCeEEEEEEECCC-------CCEEEEEEEE
Confidence            57899999999998752       6899999865

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=91.26  E-value=1.1  Score=43.25  Aligned_cols=31  Identities=19%  Similarity=0.308  Sum_probs=26.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.+++++.|+||+|+.+++       |+.||||+..+
T Consensus        27 ~~~l~~g~~~~vy~~~~~~~-------~~~~aik~~~~   57 (291)
T cd06639          27 IETIGKGTYGKVYKVTNKKD-------GSLAAVKILDP   57 (291)
T ss_pred             EEEeecCCCeEEEEEEECCC-------CCEEEEEEecc
Confidence            35899999999999998752       68999998764

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=91.15  E-value=0.67  Score=42.66  Aligned_cols=77  Identities=21%  Similarity=0.242  Sum_probs=50.3

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHH
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMM  369 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~  369 (455)
                      +|++.|.-.+||+.+..+         ..+++|+-+|. .                              ..        
T Consensus         3 ~~l~~G~~n~~~~v~~~~---------~~~vlK~~~~~-~------------------------------~~--------   34 (239)
T PF01636_consen    3 RPLSGGFSNRVYRVTTDD---------GRYVLKFYRPP-D------------------------------AA--------   34 (239)
T ss_dssp             EEEEESSSSEEEEEEETT---------SEEEEEEESSH-H------------------------------HH--------
T ss_pred             ccCCCCCeeeEEEEEECC---------cEEEEEEeCCC-C------------------------------CH--------
Confidence            689999999999999853         59999985544 0                              00        


Q ss_pred             HhcCHHHHHHHHHHHHHHhCCCCCeEeCcccC-----CCCCCCeEEeecccCccccc
Q 012848          370 SQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY-----PLVHPAVLVETYEQGECVSR  421 (455)
Q Consensus       370 ~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~-----~lst~rVLVmE~i~G~~i~~  421 (455)
                        -+...|++.++.+.+.     .+.+|+++.     +.....+++|+|++|.++.+
T Consensus        35 --~~~~~e~~~~~~l~~~-----~~pvP~~~~~~~~~~~~~~~~~~~~~i~g~~~~~   84 (239)
T PF01636_consen   35 --ERLRREAAVLRQLAEH-----GIPVPRVLAFDTSDEFNGFPYLLMEYIPGRPLDD   84 (239)
T ss_dssp             --HHHHHHHHHHHHHHHT-----TSBS--EEEEEEETEETSEEEEEEEEESSEEHHH
T ss_pred             --HHHHHHHHHHHHHHhc-----CCCCceEEeecccccccccceEEEEEeccccccc
Confidence              0113555555555543     236888885     22233589999999999886

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=91.11  E-value=1.5  Score=43.70  Aligned_cols=32  Identities=16%  Similarity=0.093  Sum_probs=24.9

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      +.||.|+.|.||+++....    ...|+.||||+..
T Consensus         6 ~~lg~G~~g~Vy~~~~~~~----~~~~~~~aiK~~~   37 (332)
T cd05614           6 KVLGTGAYGKVFLVRKVTG----HDTGKLYAMKVLQ   37 (332)
T ss_pred             EEEeecCCEEEEEEEEccc----CCCCCEEEEEEEE
Confidence            5789999999999987431    1237899999865

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=91.10  E-value=1.2  Score=42.77  Aligned_cols=91  Identities=23%  Similarity=0.282  Sum_probs=51.9

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHH
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMM  369 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~  369 (455)
                      +-||.|+-|.||+|+++.   .....+.+|+||+..+.....                            ..        
T Consensus         5 ~~ig~G~fg~v~~~~~~~---~~~~~~~~V~vk~~~~~~~~~----------------------------~~--------   45 (259)
T PF07714_consen    5 KQIGEGSFGKVYRAEWKQ---KDNDKNQPVAVKILKPSSSEE----------------------------EE--------   45 (259)
T ss_dssp             EEEEEESSEEEEEEEEES---TTTSSEEEEEEEEESTTSSHH----------------------------HH--------
T ss_pred             eEEccCCCcEEEEEEEEc---ccCCCCEEEEEEEeccccccc----------------------------cc--------
Confidence            458999999999999983   112246899999986643211                            01        


Q ss_pred             HhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccchhHHh
Q 012848          370 SQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDEL  426 (455)
Q Consensus       370 ~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~l  426 (455)
                        -+|.+|.+.+.++     +.+++.-.--+..-..+-.+||||+++-++.+++...
T Consensus        46 --~~~~~e~~~l~~l-----~h~ni~~~~g~~~~~~~~~lv~e~~~~g~L~~~L~~~   95 (259)
T PF07714_consen   46 --EEFLNEIQILRKL-----RHPNIVKLYGFCIENEPLFLVMEYCPGGSLDDYLKSK   95 (259)
T ss_dssp             --HHHHHHHHHHHTH-----SBTTBE-EEEEEESSSSEEEEEE--TTEBHHHHHHHT
T ss_pred             --eeeeecccccccc-----ccccccccccccccccccccccccccccccccccccc
Confidence              1234455555444     1222211111111234568999999998999887654

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=91.09  E-value=0.96  Score=44.86  Aligned_cols=29  Identities=28%  Similarity=0.224  Sum_probs=24.3

Q ss_pred             cccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          291 PVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       291 PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .||.|+.|+||+|+.+++       |+.||||+...
T Consensus         2 ~lg~G~~g~Vy~~~~~~~-------~~~~aiK~~~~   30 (321)
T cd05603           2 VIGKGSFGKVLLAKRKSD-------GSFYAVKVLQK   30 (321)
T ss_pred             eeeeCCCEEEEEEEECCC-------CCEEEEEEEEH
Confidence            578999999999998752       68999998753

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=91.09  E-value=1.3  Score=43.41  Aligned_cols=31  Identities=19%  Similarity=0.214  Sum_probs=26.0

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.++.++.|.||+|+..+.       |+.||||+.++.
T Consensus         7 ~~ig~g~~g~vy~~~~~~~-------~~~~aiK~~~~~   37 (316)
T cd05574           7 KLLGKGDVGRVFLVRLKGT-------GKLFALKVLDKK   37 (316)
T ss_pred             eeecCCccEEEEEEEEcCC-------CcEEEEEEEecc
Confidence            5789999999999998752       689999988754

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=91.04  E-value=0.89  Score=46.17  Aligned_cols=30  Identities=17%  Similarity=0.163  Sum_probs=25.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.||.|+.|.||+|+.+..       |+.||||+.+
T Consensus         6 ~~~LG~G~~g~V~~~~~~~~-------~~~~aiK~~~   35 (363)
T cd05628           6 LKVIGRGAFGEVRLVQKKDT-------GHVYAMKILR   35 (363)
T ss_pred             eEEEEeCCCEEEEEEEECCC-------CCEEEEEEEE
Confidence            36799999999999998752       6899999875

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=90.97  E-value=1.2  Score=41.84  Aligned_cols=30  Identities=20%  Similarity=0.165  Sum_probs=24.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.++.+..|.||+|..+++       +++||||+..
T Consensus         5 ~~~lg~g~~~~v~~~~~~~~-------~~~~~ik~~~   34 (256)
T cd08220           5 IRVVGRGAFGIVHLCRRKAD-------QKLVIIKQIP   34 (256)
T ss_pred             EEEecccCceEEEEEEEcCC-------CcEEEEEEEe
Confidence            36789999999999998652       6899999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=90.92  E-value=1.2  Score=43.37  Aligned_cols=29  Identities=28%  Similarity=0.106  Sum_probs=24.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEee
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVR  324 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVq  324 (455)
                      .+.|+.|+.|.||+|..+.+       |+.|+||+.
T Consensus        24 ~~~lg~g~~g~v~~~~~~~~-------~~~~~iK~~   52 (285)
T cd06648          24 FVKIGEGSTGIVCIATDKST-------GRQVAVKKM   52 (285)
T ss_pred             ceEeccCCCeEEEEEEECCC-------CCEEEEEEE
Confidence            47999999999999997642       689999963

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=90.88  E-value=1.3  Score=44.34  Aligned_cols=29  Identities=28%  Similarity=0.269  Sum_probs=24.5

Q ss_pred             cccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          291 PVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       291 PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .||.|+-|.||+|+.+..       |+.||||+.++
T Consensus         2 ~lG~G~~g~V~~~~~~~~-------~~~~aiK~i~~   30 (329)
T cd05588           2 VIGRGSYAKVLLVELKKT-------RRIYAMKVIKK   30 (329)
T ss_pred             eEeeCCCeEEEEEEECCC-------CCEEEEEEEEH
Confidence            578999999999998752       68999999764

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=90.84  E-value=1.2  Score=44.38  Aligned_cols=29  Identities=31%  Similarity=0.267  Sum_probs=24.1

Q ss_pred             cccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          291 PVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       291 PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      -||.|+.|.||+|+.+.+       |+.||||+.+.
T Consensus         2 ~lG~G~~g~V~~~~~~~~-------~~~~aiK~~~~   30 (318)
T cd05570           2 VLGKGSFGKVLLAELKGT-------DELYAVKVLKK   30 (318)
T ss_pred             eeeeCCCeEEEEEEECCC-------CCEEEEEEEEH
Confidence            378999999999998752       68999998764

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=90.84  E-value=2  Score=41.23  Aligned_cols=37  Identities=16%  Similarity=0.254  Sum_probs=27.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.|+.|+.|.||+|.....  +....+..|++|+.+..
T Consensus        10 ~~~lg~G~~g~Vy~~~~~~~--~~~~~~~~v~~K~~~~~   46 (283)
T cd05048          10 LEELGEGAFGKVYKGELTGP--NERLSATSVAIKTLKEN   46 (283)
T ss_pred             hhcccCccCCcEEEEEEecC--CCCcceeeEEEEecccC
Confidence            46799999999999998652  11123478999987654

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=90.83  E-value=0.95  Score=45.67  Aligned_cols=30  Identities=13%  Similarity=0.108  Sum_probs=25.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+..
T Consensus         6 ~~~lG~G~~g~V~~~~~~~~-------~~~vaiK~~~   35 (364)
T cd05599           6 IKVIGRGAFGEVRLVQKKDT-------GHIYAMKKLR   35 (364)
T ss_pred             EEEEEecCCEEEEEEEECCC-------CCEEEEEEEE
Confidence            36799999999999998752       6899999875

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=90.83  E-value=1.6  Score=42.25  Aligned_cols=27  Identities=19%  Similarity=0.258  Sum_probs=22.4

Q ss_pred             ccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          292 VASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       292 iASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      ||.|+.|.||+++.+.+       |+.||||+..
T Consensus         1 lg~G~~g~Vy~~~~~~~-------~~~~avK~~~   27 (280)
T cd05608           1 LGKGGFGEVSACQMRAT-------GKLYACKKLN   27 (280)
T ss_pred             CCCCCceeEEEEEEccC-------CcEEEEEeee
Confidence            57899999999998752       6899999754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=90.82  E-value=0.2  Score=51.78  Aligned_cols=104  Identities=22%  Similarity=0.253  Sum_probs=71.1

Q ss_pred             HHHHHHHHHhCCChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHH
Q 012848          267 YTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKIS  346 (455)
Q Consensus       267 ~v~~vle~elG~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~  346 (455)
                      +.++.=+.+|.++++|+|+-.+  -+|-||-|-||+|.-++.       |+.||||-. |     ++.            
T Consensus        18 ~~~KLd~~sL~K~PEEVFDi~~--KLGEGSYGSV~KAIH~Es-------G~v~AIK~V-P-----V~s------------   70 (502)
T KOG0574|consen   18 DGFKLDSSALNKPPEEVFDIVG--KLGEGSYGSVHKAIHRES-------GHVLAIKKV-P-----VDT------------   70 (502)
T ss_pred             cccccChhhhcCChHHHHHHHH--HhcCCcchHHHHHHHhcc-------CcEEEEEec-C-----ccc------------
Confidence            5666777889999999987665  489999999999999873       799999922 1     122            


Q ss_pred             ccccCccccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccchhHH
Q 012848          347 SVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       347 ~~~P~l~~l~l~e~v~ef~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~  425 (455)
                               +|.|++.|+  .+++|+|-..=   .+-+...|++              |.=-+||||+-.-+|+|++..
T Consensus        71 ---------DLQEIIKEI--SIMQQC~S~yV---VKYYGSYFK~--------------sDLWIVMEYCGAGSiSDI~R~  121 (502)
T KOG0574|consen   71 ---------DLQEIIKEI--SIMQQCKSKYV---VKYYGSYFKH--------------SDLWIVMEYCGAGSISDIMRA  121 (502)
T ss_pred             ---------hHHHHHHHH--HHHHHcCCchh---hhhhhhhccC--------------CceEeehhhcCCCcHHHHHHH
Confidence                     456667665  46677764211   1112233332              333489999999999998754

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=90.78  E-value=2.1  Score=40.63  Aligned_cols=112  Identities=16%  Similarity=0.173  Sum_probs=63.1

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.++.|+-|.||+|+..+        +..|+||+.+++-..                              .+      
T Consensus        11 ~~~lg~g~~~~vy~~~~~~--------~~~~~iK~~~~~~~~------------------------------~~------   46 (260)
T cd05073          11 EKKLGAGQFGEVWMATYNK--------HTKVAVKTMKPGSMS------------------------------VE------   46 (260)
T ss_pred             EeEecCccceEEEEEEecC--------CccEEEEecCCChhH------------------------------HH------
Confidence            4679999999999998754        467999987764110                              00      


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccchhHHhhhc---hhhHHHHHHHHHHHHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGH---ERLKSALAHIGTHALL  445 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~l~~~---~~~~~~LA~~g~~afl  445 (455)
                          ++.+|..-+.++    ....-+.+...+.+  ..-.++|||++|..+.+++......   ......++..++.++.
T Consensus        47 ----~~~~e~~~l~~l----~~~~i~~~~~~~~~--~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~  116 (260)
T cd05073          47 ----AFLAEANVMKTL----QHDKLVKLHAVVTK--EPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMA  116 (260)
T ss_pred             ----HHHHHHHHHHhc----CCCCcceEEEEEcC--CCeEEEEEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHH
Confidence                124444444332    22222334333332  4568999999998888765432111   1112234455555443


Q ss_pred             HhhhccCCCC
Q 012848          446 KMLLVPYLNN  455 (455)
Q Consensus       446 kmlf~dgFv~  455 (455)
                       .|-..|++|
T Consensus       117 -~lH~~~i~H  125 (260)
T cd05073         117 -FIEQRNYIH  125 (260)
T ss_pred             -HHHhCCccc
Confidence             334566665

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=90.73  E-value=1.4  Score=42.84  Aligned_cols=31  Identities=16%  Similarity=0.145  Sum_probs=25.8

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.|+.|+.|.||+|+...+       |+.||||+..+.
T Consensus         6 ~~lg~G~~g~vy~~~~~~~-------~~~~aiK~~~~~   36 (285)
T cd05632           6 RVLGKGGFGEVCACQVRAT-------GKMYACKRLEKK   36 (285)
T ss_pred             EEEecCCCeEEEEEEECCC-------CcEEEEEEeehh
Confidence            5689999999999998752       689999987553

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=90.71  E-value=0.87  Score=44.13  Aligned_cols=32  Identities=25%  Similarity=0.216  Sum_probs=26.4

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      +.|+.|.-|+||+|+.+.+       |+.||||+.+...
T Consensus         6 ~~lg~g~~~~vy~~~~~~~-------~~~v~iK~~~~~~   37 (298)
T cd07841           6 KKLGEGTYAVVYKARDKET-------GRIVAIKKIKLGE   37 (298)
T ss_pred             eeeeeccccEEEEEEECCC-------CcEEEEEEEeccc
Confidence            4589999999999998652       6899999887654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=90.67  E-value=1.1  Score=43.44  Aligned_cols=32  Identities=16%  Similarity=0.116  Sum_probs=25.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|..+.+       |+.||||+..+.
T Consensus         5 ~~~lg~G~~g~V~~~~~~~~-------~~~~avK~~~~~   36 (285)
T cd05631           5 YRVLGKGGFGEVCACQVRAT-------GKMYACKKLEKK   36 (285)
T ss_pred             EEEEecCCCEEEEEEEEecC-------CceEEEEEeeHh
Confidence            35689999999999998752       689999976543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=90.66  E-value=2.8  Score=40.61  Aligned_cols=29  Identities=14%  Similarity=0.068  Sum_probs=23.8

Q ss_pred             cccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          291 PVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       291 PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .|+.|+.|+||+|+...+       |+.||||+..+
T Consensus         1 ~ig~g~~g~Vy~~~~~~~-------~~~vaiK~~~~   29 (278)
T cd05606           1 IIGRGGFGEVYGCRKADT-------GKMYAMKCLDK   29 (278)
T ss_pred             CcccCCCeEEEEEEEecC-------CCEEEEEEeec
Confidence            378899999999987642       68999998765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=90.65  E-value=0.92  Score=46.60  Aligned_cols=30  Identities=17%  Similarity=0.182  Sum_probs=25.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.||.|+-|.||+|+.+..       |+.||+|+..
T Consensus        48 ~~~lG~G~fg~Vy~~~~~~~-------~~~~aiK~i~   77 (371)
T cd05622          48 VKVIGRGAFGEVQLVRHKST-------RKVYAMKLLS   77 (371)
T ss_pred             EEEEeecCCeEEEEEEECCC-------CcEEEEEEEE
Confidence            46799999999999998752       6899999864

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=90.65  E-value=1.7  Score=43.19  Aligned_cols=30  Identities=27%  Similarity=0.226  Sum_probs=25.2

Q ss_pred             cccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          291 PVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       291 PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .||.|+-|+||+|+.+.+       |+.||||+.+++
T Consensus         2 ~lg~G~~g~V~~~~~~~~-------~~~~avK~~~~~   31 (316)
T cd05620           2 VLGKGSFGKVLLAELKGK-------GEYFAVKALKKD   31 (316)
T ss_pred             eeeeCCCeEEEEEEECCC-------CCEEEEEEEEHH
Confidence            478999999999998752       689999988754

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=90.61  E-value=1.9  Score=40.81  Aligned_cols=32  Identities=25%  Similarity=0.394  Sum_probs=24.3

Q ss_pred             ccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          292 VASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       292 iASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      ||.|..|+||+|+.... +|   .+..||+|+.+++
T Consensus         3 ig~G~~g~v~~~~~~~~-~~---~~~~~~iK~~~~~   34 (257)
T cd05060           3 LGHGNFGSVVKGVYLMK-SG---KEVEVAVKTLKQE   34 (257)
T ss_pred             cCccCceeEEEeEeecc-CC---CcceEEEEecccc
Confidence            68899999999987652 11   2479999987665

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=90.56  E-value=1.1  Score=44.77  Aligned_cols=30  Identities=20%  Similarity=0.182  Sum_probs=25.4

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      +.||.|+-|+||+|+.+.+       |+.||||+...
T Consensus         6 ~~lg~G~~g~Vy~~~~~~~-------~~~vaiK~~~~   35 (323)
T cd05615           6 MVLGKGSFGKVMLAERKGT-------DELYAIKILKK   35 (323)
T ss_pred             EEEEecCCeEEEEEEECCC-------CCEEEEEEEEH
Confidence            6799999999999998652       68999998653

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=90.42  E-value=0.53  Score=52.76  Aligned_cols=31  Identities=23%  Similarity=0.286  Sum_probs=26.1

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.|+.|+.|.||+|+....       |+.||||+.+.
T Consensus         9 ~~~LG~G~fg~Vy~a~~~~~-------~~~vAiKvi~~   39 (669)
T cd05610           9 VKPISRGAFGKVYLGRKKNN-------SKLYAVKVVKK   39 (669)
T ss_pred             EEEEecCCCeEEEEEEECCC-------CcEEEEEEEeh
Confidence            47899999999999998752       68999999754

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=90.41  E-value=1.4  Score=41.62  Aligned_cols=31  Identities=16%  Similarity=0.121  Sum_probs=25.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .++++.|+.+.||+|+.++.       |+.||+|+...
T Consensus         5 ~~~i~~g~~~~v~~~~~~~~-------~~~~~ik~~~~   35 (258)
T cd05578           5 LRVIGKGAFGKVCIVQKRDT-------KKMFAMKYMNK   35 (258)
T ss_pred             EEEeccCCCceEEEEEEccC-------CcEEEEEEEeh
Confidence            46889999999999998642       68999998864

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=90.37  E-value=0.35  Score=54.34  Aligned_cols=120  Identities=16%  Similarity=0.186  Sum_probs=68.1

Q ss_pred             ccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc----ccchHhHHHHHHHHHHHHccccCccccCHHHHH
Q 012848          286 GFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV----GESIRRDFVIINLAAKISSVIPAVKWLRLDESV  361 (455)
Q Consensus       286 ~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV----~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v  361 (455)
                      ..-.+-+|-|--|+||||+-+..       |+.||||+-++..    .+..-+.+.+|+                     
T Consensus        15 W~~~e~LG~Ga~g~V~rgrnket-------G~~vAvK~~~~~~~~r~~e~~~~Eieilk---------------------   66 (732)
T KOG4250|consen   15 WEMDERLGKGAFGNVYRGRNKET-------GRLVAVKTFNKESSLRPRERWCREIEILK---------------------   66 (732)
T ss_pred             eeehhhhcCCccceeeeeccccc-------ccchhHHhhhhhcccchHHHHHHHHHHHH---------------------
Confidence            44567899999999999997763       7999999877643    111111122221                     


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccC--CCCCCCeEEeecccCccccchhHHhhhchhhH-HHHHH
Q 012848          362 QQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY--PLVHPAVLVETYEQGECVSRYVDELQGHERLK-SALAH  438 (455)
Q Consensus       362 ~ef~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~--~lst~rVLVmE~i~G~~i~~~~~~l~~~~~~~-~~LA~  438 (455)
                               .|+    ..|+-+         .+.||..--  --+...||+|||+.|-++...++..+...-++ .++-.
T Consensus        67 ---------KLn----h~NIVk---------~f~iee~~~~~~~~~~~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~  124 (732)
T KOG4250|consen   67 ---------KLN----HPNIVK---------LFDIEETKFLGLVTRLPVLVMEYCSGGSLRKVLNSPENAYGLPESEFLD  124 (732)
T ss_pred             ---------HcC----chhhhh---------hcccCCccccCcccccceEEEeecCCCcHHHHhcCcccccCCCHHHHHH
Confidence                     122    112221         122222221  13677899999999999988776544322222 23322


Q ss_pred             HHHH--HHHHhhhccCCCC
Q 012848          439 IGTH--ALLKMLLVPYLNN  455 (455)
Q Consensus       439 ~g~~--aflkmlf~dgFv~  455 (455)
                      .+.+  +-++-|=++|.+|
T Consensus       125 lL~d~~~al~~LrEn~IvH  143 (732)
T KOG4250|consen  125 LLSDLVSALRHLRENGIVH  143 (732)
T ss_pred             HHHHHHHHHHHHHHcCcee
Confidence            2222  3345566777776

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=90.36  E-value=1.4  Score=43.27  Aligned_cols=32  Identities=19%  Similarity=0.211  Sum_probs=26.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      -+.+|.|+-|.||+|+.+..       ++.||||+.+..
T Consensus        11 ~~~lg~G~~g~Vy~~~~~~~-------~~~vaiK~~~~~   42 (309)
T cd07872          11 LEKLGEGTYATVFKGRSKLT-------ENLVALKEIRLE   42 (309)
T ss_pred             EEEecccCCEEEEEEEecCC-------CCeEEEEEeecc
Confidence            46799999999999998652       589999986543

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=90.33  E-value=1.9  Score=41.95  Aligned_cols=31  Identities=19%  Similarity=0.223  Sum_probs=25.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.++.|+.|.||+|+.+.+       |+.||||+.+.
T Consensus        10 ~~~lg~G~~g~Vy~~~~~~~-------~~~vaiK~~~~   40 (288)
T cd07871          10 LDKLGEGTYATVFKGRSKLT-------ENLVALKEIRL   40 (288)
T ss_pred             eeEEecCCCEEEEEEEECCC-------CCEEEEEEecc
Confidence            46799999999999998652       68999998753

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=90.27  E-value=2  Score=41.36  Aligned_cols=37  Identities=24%  Similarity=0.260  Sum_probs=26.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .++++.|..|+||+|+.++. +| ...+..|++|.....
T Consensus        11 ~~~lg~g~~g~vy~~~~~~~-~~-~~~~~~v~ik~~~~~   47 (277)
T cd05036          11 LRALGHGAFGEVYEGLYRGR-DG-DAVELQVAVKTLPES   47 (277)
T ss_pred             eeECCCCCCCcEEEEEEecC-CC-CCCceeEEEEEcCCC
Confidence            36899999999999999752 11 113578999966543

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=90.25  E-value=1.3  Score=44.14  Aligned_cols=30  Identities=27%  Similarity=0.234  Sum_probs=24.6

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      +.||.|+.|.||+|+.+.+       |+.||+|+...
T Consensus         1 ~~lg~G~fg~V~~~~~~~~-------~~~~aiK~~~~   30 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAE-------EKFYAVKVLQK   30 (325)
T ss_pred             CeeeeCCCeEEEEEEECCC-------CCEEEEEEEEH
Confidence            3588999999999998752       68999998753

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=90.23  E-value=1.6  Score=41.50  Aligned_cols=30  Identities=23%  Similarity=0.285  Sum_probs=24.0

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.++.|+-|.||.|+.++        +.+||||...++
T Consensus        10 ~~lg~G~~~~vy~~~~~~--------~~~~aik~~~~~   39 (256)
T cd05113          10 KELGTGQFGVVKYGKWRG--------QYDVAIKMIKEG   39 (256)
T ss_pred             eEecCcccceEEEEEecC--------CCcEEEEEcCCC
Confidence            568999999999998754        367999976544

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=90.22  E-value=2.8  Score=40.64  Aligned_cols=30  Identities=13%  Similarity=0.053  Sum_probs=25.1

Q ss_pred             cccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          291 PVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       291 PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .++.|+-|.||+|+.+++       |+.||||+.++.
T Consensus         1 ~lg~G~~g~Vy~~~~~~~-------~~~~aiK~~~~~   30 (279)
T cd05633           1 IIGRGGFGEVYGCRKADT-------GKMYAMKCLDKK   30 (279)
T ss_pred             CcccCCCeEEEEEEECCC-------CcEEEEEEEEcc
Confidence            378999999999998652       689999988765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=90.21  E-value=0.72  Score=46.40  Aligned_cols=46  Identities=26%  Similarity=0.238  Sum_probs=33.3

Q ss_pred             HhCCChHhhccccc-cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          275 AFGRRLSEIFDGFE-EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       275 elG~~~~eiF~~fd-~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.++...++...++ ..+|+.++.|+||+|+.+.+       |+.||||+..+.
T Consensus         5 ~~~~~~~~~~~~y~~~~~ig~g~~g~vy~~~~~~~-------~~~~aiK~~~~~   51 (343)
T cd07851           5 ELNKTVWEVPDRYQNLSPVGSGAYGQVCSAFDTKT-------GRKVAIKKLSRP   51 (343)
T ss_pred             hhccceecccCceEEEEEeccCCceEEEEEEECCC-------CcEEEEEecccc
Confidence            44444444444443 58899999999999999752       689999987653

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=90.12  E-value=1.1  Score=46.84  Aligned_cols=90  Identities=16%  Similarity=0.139  Sum_probs=54.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||+|+.|.||+|+....  +....+..||||+.++.....-.                                   
T Consensus        42 ~~~LG~G~fG~Vy~~~~~~~--~~~~~~~~vavK~l~~~~~~~~~-----------------------------------   84 (400)
T cd05105          42 GRILGSGAFGKVVEGTAYGL--SRSQPVMKVAVKMLKPTARSSEK-----------------------------------   84 (400)
T ss_pred             hheecCCCCceEEEEEEccc--CCCCCceEEEEEecCCCCChHHH-----------------------------------
Confidence            36899999999999997431  11223578999998876421100                                   


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCccc--CCCCCCCeEEeecccCccccchhH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPV--YPLVHPAVLVETYEQGECVSRYVD  424 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~--~~lst~rVLVmE~i~G~~i~~~~~  424 (455)
                         -++.+|++.+.++.    .+++  |++.+  ..-.....|||||++|-.+.+++.
T Consensus        85 ---~~~~~Ei~~l~~l~----~Hpn--Iv~l~~~~~~~~~~~lv~Ey~~~g~L~~~l~  133 (400)
T cd05105          85 ---QALMSELKIMTHLG----PHLN--IVNLLGACTKSGPIYIITEYCFYGDLVNYLH  133 (400)
T ss_pred             ---HHHHHHHHHHHhcC----CCCC--eeeEEEEEccCCceEEEEEecCCCcHHHHHH
Confidence               12355655555442    2232  22222  122345689999999998887664

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=90.09  E-value=1.3  Score=42.93  Aligned_cols=27  Identities=15%  Similarity=0.181  Sum_probs=22.7

Q ss_pred             ccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          292 VASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       292 iASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      |+.|+.|+||+++.+..       |+.||+|+..
T Consensus         1 lg~G~~g~Vy~~~~~~~-------~~~~a~K~~~   27 (277)
T cd05607           1 LGKGGFGEVCAVQVKNT-------GKMYACKKLD   27 (277)
T ss_pred             CCCCCceEEEEEEEccC-------CcEEEEEEEc
Confidence            57899999999998752       6899999764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=90.04  E-value=0.92  Score=43.71  Aligned_cols=32  Identities=19%  Similarity=0.153  Sum_probs=26.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.++.|+-|.||+|+.+++       |+.||||+....
T Consensus         6 ~~~lg~g~~~~v~~~~~~~~-------~~~~avK~~~~~   37 (287)
T cd07848           6 LGVVGEGAYGVVLKCRHKET-------KEIVAIKKFKDS   37 (287)
T ss_pred             EEEecccCCEEEEEEEECCC-------CcEEEEEEEecc
Confidence            35689999999999998752       689999987643

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=90.01  E-value=2.3  Score=40.48  Aligned_cols=32  Identities=16%  Similarity=0.070  Sum_probs=26.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      ...++.|+-|.||+|+.+++       ++.|+||.....
T Consensus        13 ~~~lg~g~~g~v~~~~~~~~-------~~~v~~k~~~~~   44 (268)
T cd06624          13 RVVLGKGTYGIVYAARDLST-------QVRIAIKEIPER   44 (268)
T ss_pred             eEEEecCCceEEEEeEecCC-------CcEEEEEEecCC
Confidence            46899999999999998652       689999976543

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=89.99  E-value=1.6  Score=41.25  Aligned_cols=28  Identities=25%  Similarity=0.241  Sum_probs=22.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+-++.|+-|+||+|+.+         |+.||+|...
T Consensus        11 ~~~lg~g~~~~v~~~~~~---------~~~~~~k~~~   38 (256)
T cd05082          11 LQTIGKGEFGDVMLGDYR---------GNKVAVKCIK   38 (256)
T ss_pred             eeeecccCCCeEEEEEEc---------CCcEEEEEeC
Confidence            366899999999999874         5889999753

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=89.93  E-value=2.1  Score=41.07  Aligned_cols=89  Identities=19%  Similarity=0.190  Sum_probs=53.5

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHH
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMM  369 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~  369 (455)
                      +.|+.|+-|+||+|+.+++  |. .....||+|+..++..                            .+          
T Consensus        13 ~~ig~g~~g~v~~~~~~~~--~~-~~~~~~aik~~~~~~~----------------------------~~----------   51 (279)
T cd05057          13 KVLGSGAFGTVYKGVWIPE--GE-KVKIPVAIKVLREETS----------------------------PK----------   51 (279)
T ss_pred             ceecCCCCccEEEEEEecC--CC-CcceEEEEEeccCCCC----------------------------HH----------
Confidence            7899999999999998752  31 1124799998765532                            00          


Q ss_pred             HhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccchhHH
Q 012848          370 SQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       370 ~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~  425 (455)
                      ..-++.+|+..+.++.    +..-+.+....  .+....++|||++|.++.+++..
T Consensus        52 ~~~~~~~e~~~l~~l~----h~~i~~~~~~~--~~~~~~~v~e~~~~g~L~~~l~~  101 (279)
T cd05057          52 ANKEILDEAYVMASVD----HPHVVRLLGIC--LSSQVQLITQLMPLGCLLDYVRN  101 (279)
T ss_pred             HHHHHHHHHHHHHhCC----CCCcceEEEEE--ecCceEEEEecCCCCcHHHHHHh
Confidence            0112345665555442    11112222222  23678899999999998876543

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=89.89  E-value=2.1  Score=41.79  Aligned_cols=39  Identities=23%  Similarity=0.202  Sum_probs=27.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .++++.|.-|+||+|+....-.+...++..||||+..+.
T Consensus        20 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~   58 (304)
T cd05101          20 GKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDD   58 (304)
T ss_pred             cceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccc
Confidence            589999999999999863210111123578999988755

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=89.88  E-value=2.6  Score=39.77  Aligned_cols=30  Identities=27%  Similarity=0.282  Sum_probs=24.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.+|.|+-|.||+|+..         |+.||||+....
T Consensus        11 ~~~ig~g~~g~v~~~~~~---------~~~v~iK~~~~~   40 (256)
T cd05039          11 GATIGKGEFGDVMLGDYR---------GQKVAVKCLKDD   40 (256)
T ss_pred             eeeeecCCCceEEEEEec---------CcEEEEEEeccc
Confidence            467999999999999874         589999976543

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=89.84  E-value=1.7  Score=43.50  Aligned_cols=30  Identities=13%  Similarity=0.266  Sum_probs=25.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.||.|+.|.||+|+.+..       |+.||||+..
T Consensus         6 ~~~lG~G~fg~V~~~~~~~~-------~~~~aiK~~~   35 (331)
T cd05624           6 IKVIGRGAFGEVAVVKMKHT-------ERIYAMKILN   35 (331)
T ss_pred             EEEEeeCCCeEEEEEEECCC-------CCEEEEEEEe
Confidence            36789999999999998752       6899999864

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=89.78  E-value=1.6  Score=40.52  Aligned_cols=30  Identities=13%  Similarity=0.090  Sum_probs=24.8

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      +.++.|.-|.||+|....       +|++|+||+...
T Consensus         6 ~~l~~g~~~~v~~~~~~~-------~~~~~~ik~~~~   35 (258)
T cd08215           6 KQIGKGSFGKVYLVRRKS-------DGKLYVLKEIDL   35 (258)
T ss_pred             eeeccCCCeEEEEEEEcC-------CCcEEEEEEeec
Confidence            578999999999999864       268999998644

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=89.70  E-value=2.3  Score=41.02  Aligned_cols=33  Identities=15%  Similarity=0.041  Sum_probs=25.2

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      +.++.|+.|+||+|+....    ..+|+.||||+.+.
T Consensus         6 ~~ig~G~~~~vy~~~~~~~----~~~~~~~avk~~~~   38 (288)
T cd05583           6 RVLGTGAYGKVFLVRKVGG----HDAGKLYAMKVLKK   38 (288)
T ss_pred             EEeccCCCceEEEEEEecc----ccCCcEEEEEEEeh
Confidence            5789999999999987531    12368999998653

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=89.51  E-value=3.7  Score=39.74  Aligned_cols=32  Identities=16%  Similarity=0.234  Sum_probs=26.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.++.|+-|.||+|..++.       ++.||+|+..+.
T Consensus         6 ~~~lg~g~~~~v~~~~~~~~-------~~~~~~k~~~~~   37 (287)
T cd06621           6 LSRLGEGAGGSVTKCRLKNT-------GMIFALKTITTD   37 (287)
T ss_pred             EEEeccCCceEEEEEEECCC-------CeEEEEEEEecC
Confidence            47889999999999999752       699999986543

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=89.47  E-value=1.3  Score=44.01  Aligned_cols=32  Identities=22%  Similarity=0.196  Sum_probs=26.1

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|..|.||+|+.+.       .|+.||||+....
T Consensus        14 ~~~ig~G~~g~vy~~~~~~-------~~~~vaiK~~~~~   45 (335)
T PTZ00024         14 GAHLGEGTYGKVEKAYDTL-------TGKIVAIKKVKII   45 (335)
T ss_pred             hhcccCCCceeEEEEEECC-------CCCeEEEEEeecc
Confidence            3578999999999999764       2689999987543

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=89.44  E-value=1.7  Score=41.57  Aligned_cols=32  Identities=19%  Similarity=0.150  Sum_probs=26.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.|+.|..|+||+|+.+++       |+.|+||+.++.
T Consensus         6 ~~~i~~g~~~~v~~~~~~~~-------~~~v~vK~~~~~   37 (288)
T cd07833           6 LGVVGEGAYGVVLKCRNKAT-------GEIVAIKKFKES   37 (288)
T ss_pred             EEEecccCCeeEEEEEeCCC-------CcEEEEehhhhh
Confidence            35689999999999998752       689999988654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>PRK10345 hypothetical protein; Provisional

Probab=89.40  E-value=1.2  Score=43.08  Aligned_cols=115  Identities=12%  Similarity=0.145  Sum_probs=64.7

Q ss_pred             ccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHH
Q 012848          288 EEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVF  367 (455)
Q Consensus       288 d~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~  367 (455)
                      +.++||+|+-+.||.  -.+  +     +.. +|||.+++-..                         ..          
T Consensus         6 ~~~~LG~G~~~~Vy~--hp~--~-----~~k-~IKv~~~~~~~-------------------------~~----------   40 (210)
T PRK10345          6 EQSPLGTGRHRKCYA--HPE--D-----AQR-CIKIVYHRGDG-------------------------GD----------   40 (210)
T ss_pred             CcceecCCCceEEEE--CCC--C-----cCe-EEEEEeccccc-------------------------hH----------
Confidence            468999999999995  211  2     345 69999875210                         00          


Q ss_pred             HHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCC----e--EEeec--ccCccccchhHHhhhchhhHHHHHHH
Q 012848          368 MMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPA----V--LVETY--EQGECVSRYVDELQGHERLKSALAHI  439 (455)
Q Consensus       368 l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~r----V--LVmE~--i~G~~i~~~~~~l~~~~~~~~~LA~~  439 (455)
                          -++++|.+-+..+...-.+++.  ||+.|.-+-|+.    |  ++|||  .+|.++.++++.. ... ........
T Consensus        41 ----~~~~rEi~~l~~L~~~~~~h~n--Ivr~yg~~et~~g~g~v~~~I~e~~G~~~~tL~~~l~~~-~~~-e~~~~~~~  112 (210)
T PRK10345         41 ----KEIRRELKYYAHLSRRLIDWSG--IPRYYGTVETDCGTGYVYDVIADFDGKPSITLTEFAEQC-RYE-EDVAQLRQ  112 (210)
T ss_pred             ----HHHHHHHHHHHHhhccCCCCcc--cceeeEEEEeCCCCeEEEEEEecCCCCcchhHHHHHHcc-ccc-HhHHHHHH
Confidence                0235555555555432223333  666664444442    2  68999  4457777776431 101 11223455


Q ss_pred             HHHHHHHhhhccCCCC
Q 012848          440 GTHALLKMLLVPYLNN  455 (455)
Q Consensus       440 g~~aflkmlf~dgFv~  455 (455)
                      .++.+++-+..+|.+|
T Consensus       113 ~L~~l~~yLh~~~Ivh  128 (210)
T PRK10345        113 LLKKLKRYLLDNRIVT  128 (210)
T ss_pred             HHHHHHHHHHHCCEee
Confidence            5666677777777776

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=89.35  E-value=1.6  Score=44.68  Aligned_cols=30  Identities=17%  Similarity=0.179  Sum_probs=25.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+..
T Consensus        48 ~~~lg~G~~g~Vy~~~~~~~-------~~~~aiK~~~   77 (370)
T cd05596          48 IKVIGRGAFGEVQLVRHKSS-------KQVYAMKLLS   77 (370)
T ss_pred             EEEEeeCCCEEEEEEEECCC-------CCEEEEEEEE
Confidence            46799999999999998752       6899999874

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=89.34  E-value=2  Score=40.35  Aligned_cols=21  Identities=14%  Similarity=0.298  Sum_probs=17.3

Q ss_pred             CCCeEEeecccCccccchhHH
Q 012848          405 HPAVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       405 t~rVLVmE~i~G~~i~~~~~~  425 (455)
                      ...+|+|||++|.++.+++..
T Consensus        73 ~~~~lv~e~~~~~~L~~~l~~   93 (259)
T cd05037          73 DENIMVEEYVKFGPLDVFLHR   93 (259)
T ss_pred             CCcEEEEEcCCCCcHHHHHHh
Confidence            466899999999999887643

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=89.27  E-value=2.8  Score=41.67  Aligned_cols=27  Identities=22%  Similarity=0.266  Sum_probs=22.7

Q ss_pred             ccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          292 VASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       292 iASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      ||.|+.|.||+|+.+..       |+.||||+..
T Consensus         1 lG~G~~g~Vy~~~~~~~-------~~~~avK~~~   27 (330)
T cd05586           1 IGKGTFGQVYQVRKKDT-------RRIYAMKVLS   27 (330)
T ss_pred             CCCCCceEEEEEEECCC-------CCEEEEEEEe
Confidence            57899999999998752       6899999853

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=89.26  E-value=2.6  Score=39.62  Aligned_cols=29  Identities=21%  Similarity=0.123  Sum_probs=24.0

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      ++++.|+.|+||+|+.+.+       |++||||...
T Consensus         6 ~~lg~g~~~~v~~~~~~~~-------~~~~~~k~~~   34 (257)
T cd08223           6 RVVGKGSYGEVSLVRHRTD-------GKQYVIKKLN   34 (257)
T ss_pred             EEecCCCCeEEEEEEEcCC-------CcEEEEEEEe
Confidence            5788999999999998752       6899999753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=89.25  E-value=2.2  Score=41.52  Aligned_cols=40  Identities=25%  Similarity=0.313  Sum_probs=26.6

Q ss_pred             ccccccCcceEEEeEecccC--C--C---CCcCCeEEEEEeeCCCcc
Q 012848          290 APVASGSIAQVHRASLRFRY--P--G---QKVKPIVVAVKVRHPGVG  329 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~--~--G---~~~~G~~VAVKVqrPgV~  329 (455)
                      +.||.|+-|.||+++....-  .  +   ....+..||||+.+++..
T Consensus        11 ~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~   57 (295)
T cd05097          11 EKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVT   57 (295)
T ss_pred             hccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCC
Confidence            56999999999999875310  0  0   001234699999988753

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=89.16  E-value=1.5  Score=42.86  Aligned_cols=29  Identities=17%  Similarity=0.090  Sum_probs=23.6

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      +.++.|+-|.||+|+.+.       .|+.|+||+..
T Consensus        26 ~~lg~g~~~~v~~~~~~~-------~~~~v~ik~~~   54 (296)
T cd06654          26 EKIGQGASGTVYTAMDVA-------TGQEVAIRQMN   54 (296)
T ss_pred             EEecCCCCeEEEEEEECC-------CCcEEEEEEEe
Confidence            568999999999998754       26899999753

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=89.13  E-value=2.7  Score=40.58  Aligned_cols=38  Identities=21%  Similarity=0.162  Sum_probs=27.8

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      ...++.|+.|+||+|+.+...+|  ..+..||||+.+.+.
T Consensus        10 ~~~lg~g~~g~v~~~~~~~~~~~--~~~~~~aiK~~~~~~   47 (288)
T cd05050          10 VRDIGQGAFGRVFQARAPGLLPY--EPFTMVAVKMLKEEA   47 (288)
T ss_pred             cccccccccccEEEEEEcccCCC--CcceeEEEEecCCCc
Confidence            46889999999999997532222  235899999887653

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=89.09  E-value=2  Score=43.04  Aligned_cols=30  Identities=20%  Similarity=0.258  Sum_probs=25.1

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.||.|+.|.||+++.+..       ++.||||+..
T Consensus         6 ~~~lG~G~fg~V~~~~~~~~-------~~~~aiK~~~   35 (332)
T cd05623           6 LKVIGRGAFGEVAVVKLKNA-------DKVFAMKILN   35 (332)
T ss_pred             EEEEEeCCCeEEEEEEECCC-------CCEEEEEEEe
Confidence            46789999999999999752       6899999863

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=89.03  E-value=2  Score=41.00  Aligned_cols=31  Identities=23%  Similarity=0.124  Sum_probs=25.3

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.++.+..|.||+|+.+.+       |+.||||+.+..
T Consensus         6 ~~l~~g~~~~v~~~~~~~~-------~~~~~vK~~~~~   36 (286)
T cd07832           6 GRIGEGAHGIVFKAKDRET-------GETVALKKVALR   36 (286)
T ss_pred             eecccCCCcEEEEEEECCC-------CceEEEEEEEcc
Confidence            5689999999999998652       689999986543

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=89.02  E-value=1.3  Score=44.01  Aligned_cols=31  Identities=19%  Similarity=0.203  Sum_probs=25.8

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.|+.|..|.||+|+.+..       |+.||||+.+.
T Consensus         6 ~~~lg~G~~g~Vy~~~~~~~-------~~~~aiK~~~~   36 (330)
T cd05601           6 KSLVGRGHFGEVQVVREKAT-------GDIYAMKVMKK   36 (330)
T ss_pred             EEEEEeccCEEEEEEEECCC-------CCEEEEEEEEH
Confidence            46789999999999998752       68999998753

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=89.00  E-value=3.6  Score=39.47  Aligned_cols=36  Identities=17%  Similarity=0.110  Sum_probs=25.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.++.|+.|+||+|..+...  ....++.||||+.+.
T Consensus        11 ~~~ig~G~~g~v~~~~~~~~~--~~~~~~~~aik~~~~   46 (277)
T cd05062          11 SRELGQGSFGMVYEGIAKGVV--KDEPETRVAIKTVNE   46 (277)
T ss_pred             eeeeccccCCeEEEEEeccCC--CCCceeEEEEEeccc
Confidence            467899999999999875311  112357899997654

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=88.96  E-value=2.7  Score=40.66  Aligned_cols=20  Identities=10%  Similarity=0.213  Sum_probs=16.4

Q ss_pred             CCCeEEeecccCccccchhH
Q 012848          405 HPAVLVETYEQGECVSRYVD  424 (455)
Q Consensus       405 t~rVLVmE~i~G~~i~~~~~  424 (455)
                      ....|||||++|-.+.+++.
T Consensus        89 ~~~~lv~ey~~~g~L~~~l~  108 (274)
T cd05076          89 SENIMVEEFVEHGPLDVCLR  108 (274)
T ss_pred             CceEEEEecCCCCcHHHHHH
Confidence            45789999999999877653

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=88.89  E-value=3.3  Score=40.58  Aligned_cols=29  Identities=21%  Similarity=0.083  Sum_probs=24.0

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      +.++.|+-|.||+|+.+.+       |+.||||+..
T Consensus        25 ~~lg~g~~g~v~~~~~~~~-------~~~vaiK~~~   53 (297)
T cd06656          25 EKIGQGASGTVYTAIDIAT-------GQEVAIKQMN   53 (297)
T ss_pred             eeeccCCCeEEEEEEECCC-------CCEEEEEEEe
Confidence            5699999999999997642       6899999753

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=88.58  E-value=4.9  Score=38.76  Aligned_cols=36  Identities=22%  Similarity=0.220  Sum_probs=26.4

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      +.++.|..|+||.|+....  + ...|+.||||+.++..
T Consensus        10 ~~lg~g~~g~v~~~~~~~~--~-~~~~~~va~K~~~~~~   45 (284)
T cd05079          10 RDLGEGHFGKVELCRYDPE--G-DNTGEQVAVKSLKPES   45 (284)
T ss_pred             eecCCCCceeEEEEEEccC--C-CCccceEEEEEcCccc
Confidence            3589999999999987421  1 1236899999887664

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=88.44  E-value=3.6  Score=39.59  Aligned_cols=30  Identities=17%  Similarity=0.159  Sum_probs=24.5

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      +.|+.|+-|.||+|+.+..       |+.||+|+.+-
T Consensus         7 ~~ig~g~~g~v~~~~~~~~-------~~~~a~k~~~~   36 (286)
T cd06622           7 DELGKGNYGSVYKVLHRPT-------GVTMAMKEIRL   36 (286)
T ss_pred             hhhcccCCeEEEEEEEcCC-------CcEEEEEEeec
Confidence            5678999999999998642       68999997653

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=88.33  E-value=0.66  Score=46.65  Aligned_cols=62  Identities=18%  Similarity=0.183  Sum_probs=42.1

Q ss_pred             HHhCCChHhhccccc-cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc-cc----chHhHHHHHHHH
Q 012848          274 RAFGRRLSEIFDGFE-EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV-GE----SIRRDFVIINLA  342 (455)
Q Consensus       274 ~elG~~~~eiF~~fd-~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV-~~----~i~~DL~il~~l  342 (455)
                      ++.++.+.++...|+ .++|+.|+-|.||+|+.+.       .|+.||||+.+... .+    .+..++.+++.+
T Consensus         4 ~~~~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~-------~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l   71 (342)
T cd07879           4 EEVNKTVWELPERYTSLKQVGSGAYGSVCSAIDKR-------TGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHM   71 (342)
T ss_pred             hhhhhhhhccccceEEEEEeeecCCeEEEEEEeCC-------CCcEEEEEEecCccccccchhHHHHHHHHHHhc
Confidence            455665555555564 6899999999999999764       26899999876432 22    234455555443

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=88.22  E-value=2.6  Score=49.70  Aligned_cols=121  Identities=18%  Similarity=0.192  Sum_probs=77.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      ...||.|--|-||+|++.+. +|... ...||||...++-.                                      .
T Consensus       697 ~~~lG~G~FG~VY~g~~~~~-~~~~~-~~~vaiK~l~~~~~--------------------------------------~  736 (1025)
T KOG1095|consen  697 LRVLGKGAFGEVYEGTYSDV-PGSVS-PIQVAVKSLKRLSS--------------------------------------E  736 (1025)
T ss_pred             eeeeccccccceEEEEEecC-CCCcc-ceEEEEEeccccCC--------------------------------------H
Confidence            47899999999999999863 44211 35588886554421                                      1


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCe-EeCcccCCCCCCCeEEeecccCccccchhHHhh-----hchhhHHHHHHHHHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDV-SFPKPVYPLVHPAVLVETYEQGECVSRYVDELQ-----GHERLKSALAHIGTH  442 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V-~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~l~-----~~~~~~~~LA~~g~~  442 (455)
                      .++.||-+||.+|..|.+     ++| +.=-+-.+ .++..+++||++|--+..|+++-.     ....--++|....++
T Consensus       737 ~~~~~Fl~Ea~~m~~f~H-----pNiv~liGv~l~-~~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~d  810 (1025)
T KOG1095|consen  737 QEVSDFLKEALLMSKFDH-----PNIVSLIGVCLD-SGPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALD  810 (1025)
T ss_pred             HHHHHHHHHHHHHhcCCC-----cceeeEEEeecC-CCCcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHH
Confidence            345788999999997742     221 11111112 678899999999999988886531     122233556555544


Q ss_pred             H--HHHhhhccCCCC
Q 012848          443 A--LLKMLLVPYLNN  455 (455)
Q Consensus       443 a--flkmlf~dgFv~  455 (455)
                      +  -++=|-+.+|||
T Consensus       811 vA~G~~YLe~~~fvH  825 (1025)
T KOG1095|consen  811 VAKGMNYLESKHFVH  825 (1025)
T ss_pred             HhhhhHHHHhCCCcC
Confidence            3  344466667776

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=88.19  E-value=4.5  Score=38.49  Aligned_cols=32  Identities=16%  Similarity=0.118  Sum_probs=23.5

Q ss_pred             cccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          291 PVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       291 PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      -||.|+-|+||+|+..+.     .....|+||..+..
T Consensus         2 ~lg~G~fg~v~~~~~~~~-----~~~~~~~~k~~~~~   33 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRG-----MSKARVVVKELRAS   33 (269)
T ss_pred             cCCccCCceEEEEEEecC-----CCCeEEEEeecCcc
Confidence            378999999999987642     12468999976544

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=88.18  E-value=2.8  Score=40.27  Aligned_cols=28  Identities=14%  Similarity=0.185  Sum_probs=22.8

Q ss_pred             ccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          292 VASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       292 iASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      |+.|..|.||+|..+.       .|+.||||+.+.
T Consensus         1 lg~g~~g~vy~~~~~~-------~~~~~~ik~~~~   28 (277)
T cd05577           1 LGKGGFGEVCACQVKA-------TGKMYACKKLDK   28 (277)
T ss_pred             CCCCCceeEEEEEEcC-------CCcEEEEEEEeh
Confidence            5788999999998765       268999998764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=88.12  E-value=4.4  Score=39.10  Aligned_cols=33  Identities=15%  Similarity=0.072  Sum_probs=25.0

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      +.++.|+.|.||+|+....    ..+|+.||+|+...
T Consensus         6 ~~lg~G~~g~v~~~~~~~~----~~~g~~~aiK~~~~   38 (290)
T cd05613           6 KVLGTGAYGKVFLVRKVSG----HDSGKLYAMKVLKK   38 (290)
T ss_pred             eeeccCCcceEEEEEeccC----CCCCceEEEEEeeh
Confidence            5688999999999987531    12368999998643

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=88.08  E-value=1  Score=48.08  Aligned_cols=117  Identities=19%  Similarity=0.196  Sum_probs=72.5

Q ss_pred             HHHHHHHHhCCChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHc
Q 012848          268 TKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISS  347 (455)
Q Consensus       268 v~~vle~elG~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~  347 (455)
                      ++.+|.+-+.+.   ++.+++ -.|.+|==|-||.|+-.+        |..+||||=.-.|---=.+|=.+    ..=.+
T Consensus       132 TrmvLfrll~RG---~i~~in-GCiSTGKEANVYHat~~d--------G~~~AIKIYKTSILvFKDRdRYV----~GEfR  195 (520)
T KOG2270|consen  132 TRMVLFRLLNRG---VIVEIN-GCISTGKEANVYHATEED--------GSEFAIKIYKTSILVFKDRDRYV----SGEFR  195 (520)
T ss_pred             HHHHHHHHHhcC---eeeecc-cccccCccceeEeeecCC--------CceEEEEEEeeeEEEEechhhhc----cceee
Confidence            455555555432   233444 345566668899998765        68899999887775444444221    10001


Q ss_pred             cccCccccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccC
Q 012848          348 VIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQG  416 (455)
Q Consensus       348 ~~P~l~~l~l~e~v~ef~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G  416 (455)
                      |--+.-.-+...+|.-.+         ..|-+|+.|...     ..+.+|+|+  +-..+||||+|+-+
T Consensus       196 FRhgyck~NPRKMVk~WA---------EKE~RNLkRl~~-----aGIP~PePI--lLk~hVLVM~FlGr  248 (520)
T KOG2270|consen  196 FRHGYCKHNPRKMVKTWA---------EKEMRNLKRLNN-----AGIPCPEPI--LLKNHVLVMEFLGR  248 (520)
T ss_pred             eecccccCCcHHHHHHHH---------HHHHHHHHHHHh-----cCCCCCCce--eeecceEeeeeccC
Confidence            111111223445555443         568899998864     358888888  89999999999974

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=88.05  E-value=1.8  Score=44.42  Aligned_cols=38  Identities=21%  Similarity=0.218  Sum_probs=27.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.||.|+-|.||+|+....  .....+..||||+.++..
T Consensus        40 ~~~LG~G~fG~V~~~~~~~~--~~~~~~~~vavK~l~~~~   77 (375)
T cd05104          40 GKTLGAGAFGKVVEATAYGL--FKSDAAMTVAVKMLKPSA   77 (375)
T ss_pred             hheecCCccceEEEEEEecc--ccCccceeEEEEeccCCc
Confidence            57899999999999985310  011235799999987653

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=88.04  E-value=3.3  Score=38.76  Aligned_cols=29  Identities=14%  Similarity=0.109  Sum_probs=24.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEee
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVR  324 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVq  324 (455)
                      .++++.++.|.||+|+.+.+       |..||+|..
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~-------~~~~~ik~~   33 (257)
T cd08225           5 IKKIGEGSFGKIYLAKAKSD-------SEHCVIKEI   33 (257)
T ss_pred             EEEecCCCcceEEEEEEcCC-------CceEEEEEe
Confidence            46799999999999999762       688999964

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=88.04  E-value=2.7  Score=39.84  Aligned_cols=30  Identities=27%  Similarity=0.361  Sum_probs=24.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.|+.|+.|+||+|+.+.+       |+.|+||...
T Consensus         7 ~~~ig~g~~g~v~~~~~~~~-------~~~~~vK~~~   36 (267)
T cd08229           7 EKKIGRGQFSEVYRATCLLD-------GVPVALKKVQ   36 (267)
T ss_pred             hhhhcccCCeEEEEEeecCC-------CceEEEEeee
Confidence            46799999999999998642       6899999543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=87.98  E-value=4  Score=40.66  Aligned_cols=31  Identities=26%  Similarity=0.263  Sum_probs=25.7

Q ss_pred             cccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          291 PVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       291 PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .||.|+-|.||+|+.+..       |+.||||+.++..
T Consensus         2 ~lG~G~~g~Vy~~~~~~~-------~~~vaiK~~~~~~   32 (316)
T cd05619           2 MLGKGSFGKVFLAELKGT-------NQFFAIKALKKDV   32 (316)
T ss_pred             eeeeCCCEEEEEEEECCC-------CCEEEEEEEEHHH
Confidence            578999999999998752       6899999987643

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=87.81  E-value=3.6  Score=38.92  Aligned_cols=30  Identities=27%  Similarity=0.311  Sum_probs=24.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.++.|+-|.||+|+.+.+       |+.||||+.+
T Consensus         7 ~~~l~~g~~~~v~~~~~~~~-------~~~~~iK~~~   36 (267)
T cd08228           7 EKKIGRGQFSEVYRATCLLD-------RKPVALKKVQ   36 (267)
T ss_pred             eeeeccCCCeeEEEEEEeCC-------CCEEEEEEee
Confidence            46789999999999998752       6899999644

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=87.80  E-value=2.8  Score=40.69  Aligned_cols=31  Identities=16%  Similarity=0.103  Sum_probs=25.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.|+.+..|.||+|+.+..       |+.||||+.++
T Consensus         6 ~~~ig~g~~~~vy~~~~~~~-------~~~~aiK~~~~   36 (290)
T cd05580           6 IKTLGTGSFGRVMLVRHKGS-------GKYYALKILSK   36 (290)
T ss_pred             EEEeecCCCeEEEEEEEcCC-------CCEEEEEEEEH
Confidence            36789999999999998752       68999998764

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=87.72  E-value=5  Score=37.95  Aligned_cols=29  Identities=17%  Similarity=0.222  Sum_probs=23.4

Q ss_pred             ccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          292 VASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       292 iASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      ++.|.-|.||+|+...       .|+.||||+.++.
T Consensus         1 lg~g~~~~v~~~~~~~-------~~~~~~iK~~~~~   29 (262)
T cd05572           1 LGVGGFGRVELVKVKS-------KNRTFALKCVKKR   29 (262)
T ss_pred             CCCCCceEEEEEEECC-------CCcEEEEEEEehh
Confidence            5788899999999864       2689999988643

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=87.68  E-value=2.9  Score=39.43  Aligned_cols=29  Identities=21%  Similarity=0.141  Sum_probs=23.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.++.|+.|+||+++..         |+.||||+.+.
T Consensus        11 ~~~lg~g~~g~v~~~~~~---------~~~~~iK~~~~   39 (254)
T cd05083          11 GEIIGEGEFGAVLQGEYT---------GQKVAVKNIKC   39 (254)
T ss_pred             eeeeccCCCCceEecccC---------CCceEEEeecC
Confidence            478899999999998753         58899997643

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>TIGR02721 ycfN_thiK thiamine kinase

Probab=87.64  E-value=2.7  Score=40.79  Aligned_cols=76  Identities=24%  Similarity=0.289  Sum_probs=52.7

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHH
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMM  369 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~  369 (455)
                      .|+..|--.++|+.+. +        |++++||+..++...                        +              
T Consensus         2 ~~~~~G~tn~~y~~~~-~--------~~~~vlR~~~~~~~~------------------------~--------------   34 (256)
T TIGR02721         2 QTLSGGLTNRSWRIEH-P--------GISFVWRPQSPVCKA------------------------L--------------   34 (256)
T ss_pred             CcCCCcCcCCeEEEEe-C--------CccEEEeeCCccccc------------------------c--------------
Confidence            4677888899998873 1        578999975554210                        0              


Q ss_pred             HhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccc
Q 012848          370 SQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSR  421 (455)
Q Consensus       370 ~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~  421 (455)
                       .+|..+|.++++...+.     .+ .|+++  ...+..++|||++|.++++
T Consensus        35 -~~~r~~E~~~l~~l~~~-----g~-~P~~i--~~~~~~~v~e~i~G~~~~~   77 (256)
T TIGR02721        35 -GVDRQREYQILQALSAL-----GL-APKPI--LVNEHWLLVEWLEGEVITL   77 (256)
T ss_pred             -cCcHHHHHHHHHHHHhc-----CC-CCceE--EEeCCEEEEEeccCccccc
Confidence             14667788777776642     23 58888  4556899999999998864

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=87.56  E-value=4.6  Score=39.71  Aligned_cols=38  Identities=21%  Similarity=0.221  Sum_probs=27.1

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.|+.|.-|+||+|+....  .....+..||||+.+...
T Consensus        40 ~~~ig~G~~g~V~~~~~~~~--~~~~~~~~vavK~~~~~~   77 (302)
T cd05055          40 GKTLGAGAFGKVVEATAYGL--SKSDAVMKVAVKMLKPTA   77 (302)
T ss_pred             cceeeccCCeeEEEEEEecC--CCCCceeEEEEEecCccC
Confidence            57899999999999986421  112235789999866553

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=87.53  E-value=1.3  Score=42.73  Aligned_cols=76  Identities=21%  Similarity=0.187  Sum_probs=52.7

Q ss_pred             cccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHHH
Q 012848          291 PVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMS  370 (455)
Q Consensus       291 PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~~  370 (455)
                      -+|=|--+-||.+..+         |.+||+|||+++-..                   +                    
T Consensus        29 ~L~KG~~s~Vyl~~~~---------~~~~a~Kvrr~ds~r-------------------~--------------------   60 (201)
T COG2112          29 ELAKGTTSVVYLGEWR---------GGEVALKVRRRDSPR-------------------R--------------------   60 (201)
T ss_pred             hhhcccccEEEEeecc---------CceEEEEEecCCcch-------------------h--------------------
Confidence            3455555668888775         479999999998421                   0                    


Q ss_pred             hcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccchhH
Q 012848          371 QVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVD  424 (455)
Q Consensus       371 ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~  424 (455)
                        ++..||+-++...-      .-..|++|  +.++..+.|||++|.++.+..+
T Consensus        61 --~l~kEakiLeil~g------~~~~p~vy--~yg~~~i~me~i~G~~L~~~~~  104 (201)
T COG2112          61 --NLEKEAKILEILAG------EGVTPEVY--FYGEDFIRMEYIDGRPLGKLEI  104 (201)
T ss_pred             --hHHHHHHHHHHhhh------cCCCceEE--EechhhhhhhhhcCcchhhhhh
Confidence              23556665554331      22368888  7888999999999999987643

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=87.46  E-value=1.8  Score=43.55  Aligned_cols=37  Identities=27%  Similarity=0.252  Sum_probs=27.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+.|.||+|+....  +....|+.||||+.+.+
T Consensus        12 ~~~lG~G~fg~V~~~~~~~~--~~~~~~~~vavK~~~~~   48 (343)
T cd05103          12 GKPLGRGAFGQVIEADAFGI--DKTATCRTVAVKMLKEG   48 (343)
T ss_pred             cccccCCccceEEEEeeccC--CccccceeEEEEEeccC
Confidence            57899999999999985320  11234689999988765

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=87.31  E-value=4.1  Score=40.10  Aligned_cols=33  Identities=18%  Similarity=0.205  Sum_probs=26.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.++.|+.|.||+|+.+.+       |+.||+|+.+.+.
T Consensus         6 ~~~lg~G~~g~v~~~~~~~~-------~~~~a~k~~~~~~   38 (308)
T cd06615           6 LGELGAGNGGVVTKVLHRPS-------GLIMARKLIHLEI   38 (308)
T ss_pred             EeeccCCCCeEEEEEEEcCC-------CeEEEEEEecccc
Confidence            45689999999999987652       6899999876553

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=87.17  E-value=3.4  Score=39.79  Aligned_cols=31  Identities=23%  Similarity=0.149  Sum_probs=25.2

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      ++++.|.-|.||+|+...       .|+.||||+...+
T Consensus         7 ~~lg~g~~~~v~~~~~~~-------~~~~~aiK~~~~~   37 (279)
T cd06619           7 EILGHGNGGTVYKAYHLL-------TRRILAVKVIPLD   37 (279)
T ss_pred             eeeccCCCeEEEEEEEcC-------CCcEEEEEEEecC
Confidence            578999999999998764       2689999977544

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=87.11  E-value=7.3  Score=36.94  Aligned_cols=31  Identities=16%  Similarity=-0.032  Sum_probs=25.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+-++.|..|.||+|+.+++       |+.||||+.+.
T Consensus         7 ~~~l~~g~~g~v~~~~~~~~-------~~~v~ik~~~~   37 (265)
T cd06652           7 GKLLGQGAFGRVYLCYDADT-------GRELAVKQVQF   37 (265)
T ss_pred             eeEEecCCceEEEEEEEcCC-------CcEEEEEEeec
Confidence            45688999999999998752       68999997653

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=87.10  E-value=3.1  Score=39.06  Aligned_cols=32  Identities=25%  Similarity=0.170  Sum_probs=26.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .++++.|+.|.||+|+.+.+       ++.++||+....
T Consensus         8 ~~~l~~g~~~~v~~~~~~~~-------~~~~~ik~~~~~   39 (262)
T cd06613           8 IQRIGSGTYGDVYKARDIAT-------GELVAIKVIKLE   39 (262)
T ss_pred             EEEecCCCceEEEEeEecCC-------CCEEEEEEEEcC
Confidence            47899999999999998652       588999998644

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=87.02  E-value=2.3  Score=43.27  Aligned_cols=30  Identities=13%  Similarity=0.112  Sum_probs=25.1

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.||.|+.|.||+|+.+.+       |+.||||+..
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~-------~~~~aiK~~~   35 (377)
T cd05629           6 VKVIGKGAFGEVRLVQKKDT-------GKIYAMKTLL   35 (377)
T ss_pred             eEEEeecCCEEEEEEEECCC-------CCEEEEEEEE
Confidence            36789999999999988752       6899999864

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=86.96  E-value=4.6  Score=38.00  Aligned_cols=29  Identities=17%  Similarity=0.011  Sum_probs=24.1

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      +.++.|+.|+|++++.+.+       |+.||+|+.+
T Consensus         6 ~~lg~g~~g~v~~~~~~~~-------~~~~~iK~~~   34 (255)
T cd08219           6 RVVGEGSFGRALLVQHVNS-------DQKYAMKEIR   34 (255)
T ss_pred             EEeeccCCeEEEEEEEcCC-------CceEEEEEEE
Confidence            6789999999999987652       6899999763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=86.92  E-value=1.1  Score=51.29  Aligned_cols=147  Identities=17%  Similarity=0.299  Sum_probs=93.3

Q ss_pred             hhcCCCCCCHHH---HHHHHHHHhCCChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccch
Q 012848          256 LHSKAPEHSFAY---TKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESI  332 (455)
Q Consensus       256 LqD~vpp~~~~~---v~~vle~elG~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i  332 (455)
                      ...-+.|+.+++   +...+.+|+.  ...|+  | ++-||+|..|-|++|+||.  +|+  +-..||||-.+-|-.+. 
T Consensus       603 ~k~YiDP~TYEDPnqAvreFakEId--~s~i~--I-e~VIGaGEFGEVc~GrLk~--pgk--re~~VAIKTLK~Gytek-  672 (996)
T KOG0196|consen  603 TKTYIDPHTYEDPNQAVREFAKEID--PSCVK--I-EKVIGAGEFGEVCSGRLKL--PGK--REITVAIKTLKAGYTEK-  672 (996)
T ss_pred             ceeecCCccccCccHHHHHhhhhcC--hhheE--E-EEEEecccccceecccccC--CCC--cceeEEEeeeccCccHH-
Confidence            455566776654   3333334432  22332  2 5789999999999999997  452  24789999776664322 


Q ss_pred             HhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCe-EeCcccCCCCCCCeEEe
Q 012848          333 RRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDV-SFPKPVYPLVHPAVLVE  411 (455)
Q Consensus       333 ~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V-~vP~~~~~lst~rVLVm  411 (455)
                                                           +..||-.||.-|-.|-     +++| +.--|+ --+.+=++++
T Consensus       673 -------------------------------------qrrdFL~EAsIMGQFd-----HPNIIrLEGVV-Tks~PvMIiT  709 (996)
T KOG0196|consen  673 -------------------------------------QRRDFLSEASIMGQFD-----HPNIIRLEGVV-TKSKPVMIIT  709 (996)
T ss_pred             -------------------------------------HHhhhhhhhhhcccCC-----CCcEEEEEEEE-ecCceeEEEh
Confidence                                                 3356677777666552     3443 222222 2456678899


Q ss_pred             ecccCccccchhHHhhhchhhHHHH-HHHHHHHHHHhhhccCCCC
Q 012848          412 TYEQGECVSRYVDELQGHERLKSAL-AHIGTHALLKMLLVPYLNN  455 (455)
Q Consensus       412 E~i~G~~i~~~~~~l~~~~~~~~~L-A~~g~~aflkmlf~dgFv~  455 (455)
                      ||++.-+++.|+..-+++=..-+.+ --+|+-+-+|-|=+.|+||
T Consensus       710 EyMENGsLDsFLR~~DGqftviQLVgMLrGIAsGMkYLsdm~YVH  754 (996)
T KOG0196|consen  710 EYMENGSLDSFLRQNDGQFTVIQLVGMLRGIASGMKYLSDMNYVH  754 (996)
T ss_pred             hhhhCCcHHHHHhhcCCceEeehHHHHHHHHHHHhHHHhhcCchh
Confidence            9999999999987655431111222 2457788888888888887

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=86.88  E-value=4  Score=39.73  Aligned_cols=40  Identities=20%  Similarity=0.249  Sum_probs=26.1

Q ss_pred             cccccccCcceEEEeEecccCC---------CCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYP---------GQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~---------G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.++.|+.|.||++..++...         .....+..||||+.+...
T Consensus        10 ~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~   58 (296)
T cd05095          10 KEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDA   58 (296)
T ss_pred             eeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccC
Confidence            4579999999999986542100         011124679999887653

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=86.86  E-value=4.4  Score=39.71  Aligned_cols=40  Identities=23%  Similarity=0.145  Sum_probs=27.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .++||.|.-|.||+|+......+...++..||+|+.+++.
T Consensus        23 ~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~   62 (307)
T cd05098          23 GKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDA   62 (307)
T ss_pred             eeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCC
Confidence            5789999999999998643111111234689999988763

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=86.79  E-value=3.3  Score=39.29  Aligned_cols=80  Identities=15%  Similarity=0.086  Sum_probs=53.7

Q ss_pred             ccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHH
Q 012848          288 EEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVF  367 (455)
Q Consensus       288 d~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~  367 (455)
                      +-+|+..|...+||+-+..+   |   +++.+++|+-+++-..                                     
T Consensus         2 ~i~~l~gG~tN~~~~v~~~~---~---~~~~~vlR~~~~~~~~-------------------------------------   38 (235)
T cd05157           2 TFKRFTGGITNKLVKVSNKE---D---NQDAVLVRVYGNKTEL-------------------------------------   38 (235)
T ss_pred             eEEEcCCcccceEEEEEcCC---C---CCCeEEEEEccCCccc-------------------------------------
Confidence            34688899999999887642   0   1468999987665210                                     


Q ss_pred             HHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccc
Q 012848          368 MMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSR  421 (455)
Q Consensus       368 l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~  421 (455)
                         -+|-.+|.+.+....+.     .+ .|+++.  +.+..++|||++|.+++.
T Consensus        39 ---~~d~~~E~~~~~~l~~~-----gl-~P~v~~--~~~~~~l~e~i~G~~l~~   81 (235)
T cd05157          39 ---IIDRERELRIHKLLSKH-----GL-APKLYA--TFQNGLIYEFIPGRTLEP   81 (235)
T ss_pred             ---eecHHHHHHHHHHHHhC-----CC-CCeEEE--EeCCcEEEEeeCCCcCCH
Confidence               02445677766665532     33 688863  455779999999988763

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=86.75  E-value=4.9  Score=38.36  Aligned_cols=29  Identities=21%  Similarity=0.287  Sum_probs=23.3

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      +-++.|+-|.||+|+..+        +..||||+.++
T Consensus        12 ~~lg~g~~~~v~~~~~~~--------~~~valK~~~~   40 (262)
T cd05071          12 VKLGQGCFGEVWMGTWNG--------TTRVAIKTLKP   40 (262)
T ss_pred             eecCCCCCCcEEEEEecC--------CceEEEEeccc
Confidence            358999999999998754        35799998764

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=86.75  E-value=6.1  Score=37.64  Aligned_cols=34  Identities=18%  Similarity=0.165  Sum_probs=24.5

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      +-++.|+-|.||+|+.+..  ++..+.+.|++|+..
T Consensus        11 ~~lg~g~~g~v~~~~~~~~--~~~~~~~~~~~k~~~   44 (275)
T cd05046          11 TTLGRGEFGEVFLAKAKGI--EEEGGETLVLVKALQ   44 (275)
T ss_pred             eeecccceeEEEEEEeccC--CcCCCcceEEEEccC
Confidence            4589999999999998752  212235789999654

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=86.67  E-value=6.5  Score=36.73  Aligned_cols=30  Identities=30%  Similarity=0.239  Sum_probs=24.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.++++..|+||+|+.+++       |+.|++|+..
T Consensus         8 ~~~i~~g~~~~v~~~~~~~~-------~~~~~~k~~~   37 (256)
T cd06612           8 LEKLGEGSYGSVYKAIHKET-------GQVVAIKVVP   37 (256)
T ss_pred             hhhhcCCCCeEEEEEEEcCC-------CcEEEEEEee
Confidence            35689999999999998752       5899999743

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=86.67  E-value=6.6  Score=37.99  Aligned_cols=31  Identities=19%  Similarity=0.229  Sum_probs=25.3

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.++.|+.|.||+|+.+..       |+.|++|+....
T Consensus        18 ~~lg~g~~g~vy~~~~~~~-------~~~~~~k~~~~~   48 (292)
T cd06644          18 GELGDGAFGKVYKAKNKET-------GALAAAKVIETK   48 (292)
T ss_pred             heecCCCCeEEEEEEECCC-------CceEEEEEeccC
Confidence            4589999999999998752       689999987543

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=86.57  E-value=3.2  Score=41.65  Aligned_cols=76  Identities=14%  Similarity=0.125  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHhCCCCCeEeCccc--CC-----CCCCCeEEeecccCc-cccchhHHh-h--hchhhHHHHHHHHHH
Q 012848          374 LAREAAHLSRFIYNFRRWKDVSFPKPV--YP-----LVHPAVLVETYEQGE-CVSRYVDEL-Q--GHERLKSALAHIGTH  442 (455)
Q Consensus       374 fr~EA~nl~rf~~~f~~~~~V~vP~~~--~~-----lst~rVLVmE~i~G~-~i~~~~~~l-~--~~~~~~~~LA~~g~~  442 (455)
                      ..+|.+++.++.+.     .|.+|+|+  .+     ......||||+++|. ++.++.... .  ........+...+.+
T Consensus        75 a~rE~~~l~~L~~~-----GIptP~pVa~~e~~~~~~~~~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~  149 (268)
T PRK15123         75 ADREWRAIHRLHEV-----GVDTMTGVAFGERGSNPATRTSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVAT  149 (268)
T ss_pred             HHHHHHHHHHHHHc-----CCCCCCeeEEEEecCCCccceeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHH
Confidence            47889999988764     67788883  21     134588999999997 787775421 1  111223344444433


Q ss_pred             HHHHhhhccCCCC
Q 012848          443 ALLKMLLVPYLNN  455 (455)
Q Consensus       443 aflkmlf~dgFv~  455 (455)
                       ++..|-..|++|
T Consensus       150 -~i~~LH~~Gi~H  161 (268)
T PRK15123        150 -MVRDMHAAGINH  161 (268)
T ss_pred             -HHHHHHHCcCcc
Confidence             455566777766

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=86.54  E-value=3.1  Score=42.72  Aligned_cols=30  Identities=17%  Similarity=0.190  Sum_probs=25.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||+|+..
T Consensus        48 ~~~lG~G~fg~Vy~~~~~~~-------~~~~aiK~~~   77 (370)
T cd05621          48 VKVIGRGAFGEVQLVRHKSS-------QKVYAMKLLS   77 (370)
T ss_pred             EEEEEecCCeEEEEEEECCC-------CCEEEEEEEE
Confidence            35699999999999998752       6899999864

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=86.39  E-value=5.2  Score=39.49  Aligned_cols=30  Identities=23%  Similarity=0.108  Sum_probs=24.8

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      +.|+.|+.|+||+|+.+.+       |+.||||+.+.
T Consensus         6 ~~lg~G~~g~V~~~~~~~~-------~~~vaiK~~~~   35 (338)
T cd07859           6 EVIGKGSYGVVCSAIDTHT-------GEKVAIKKIND   35 (338)
T ss_pred             EEEeecCCeEEEEEEECCC-------CCEEEEEEech
Confidence            5689999999999998652       68999997653

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=86.36  E-value=4.4  Score=38.45  Aligned_cols=34  Identities=18%  Similarity=0.150  Sum_probs=26.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.|+.|..|.||+|..+..  +    ++.||||+.....
T Consensus         5 ~~~ig~G~~~~v~~~~~~~~--~----~~~~avk~~~~~~   38 (269)
T cd08528           5 LEHLGSGAFGCVYKVRKKNN--G----QNLLALKEINVHN   38 (269)
T ss_pred             hhhhcCCCCceEEEEEEcCC--C----CceeeeeEeeccc
Confidence            35689999999999998751  2    5899999876543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=86.30  E-value=4.2  Score=38.85  Aligned_cols=31  Identities=19%  Similarity=0.151  Sum_probs=24.9

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.|+.|+.|.||+|+.++.       |+.|+||.....
T Consensus         5 ~~ig~g~~g~v~~~~~~~~-------~~~~~ik~~~~~   35 (283)
T cd07830           5 KQLGDGTFGSVYLARNKET-------GELVAIKKMKKK   35 (283)
T ss_pred             eeeccCCceEEEEEEECCC-------CcEEEEEEehhh
Confidence            4689999999999999752       689999965443

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=86.26  E-value=4.3  Score=38.62  Aligned_cols=32  Identities=16%  Similarity=-0.056  Sum_probs=25.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.++.+..|.||+|+.+.+       |+.||+|+.+.+
T Consensus         7 ~~~lg~g~~g~v~~~~~~~~-------~~~~~ik~~~~~   38 (264)
T cd06653           7 GKLLGRGAFGEVYLCYDADT-------GRELAVKQVPFD   38 (264)
T ss_pred             eeeEccCCCeEEEEEEEcCC-------CCEEEEEEEecC
Confidence            46889999999999998652       689999976443

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=86.18  E-value=11  Score=37.06  Aligned_cols=30  Identities=27%  Similarity=0.179  Sum_probs=24.6

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      ..|+.|+-|+||+|+.+.       .|+.||||+...
T Consensus        27 ~~ig~g~~g~v~~~~~~~-------~~~~v~iK~~~~   56 (297)
T cd06659          27 IKIGEGSTGIVCIAREKH-------SGRQVAVKMMDL   56 (297)
T ss_pred             hhcCCCCceeEEEEEEcC-------CCCEEEEEEEEe
Confidence            368999999999999864       268999998643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=86.10  E-value=5.6  Score=37.83  Aligned_cols=37  Identities=16%  Similarity=0.048  Sum_probs=27.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.++.|+-|.||+|..+....  ...+..||||..+.+
T Consensus        11 ~~~lg~g~~g~v~~~~~~~~~~--~~~~~~~aik~~~~~   47 (277)
T cd05032          11 IRELGQGSFGMVYEGLAKGVVK--GEPETRVAIKTVNEN   47 (277)
T ss_pred             EeEecCCCCceEEEEEEeccCC--CCcceeEEEEecCCc
Confidence            4679999999999999975211  123589999986543

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=85.99  E-value=4.9  Score=38.80  Aligned_cols=31  Identities=29%  Similarity=0.255  Sum_probs=25.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.|+.|+-|.||+|+.+.+       |+.||||+...
T Consensus        10 ~~~ig~g~~~~v~~~~~~~~-------~~~~~iK~~~~   40 (291)
T cd07870          10 LEKLGEGSYATVYKGISRIN-------GQLVALKVISM   40 (291)
T ss_pred             EEEEEecCCEEEEEEEEcCC-------CcEEEEEEecc
Confidence            46789999999999998752       68999998653

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=85.83  E-value=1.9  Score=42.89  Aligned_cols=37  Identities=27%  Similarity=0.188  Sum_probs=26.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+.|.||+|+....  ++...++.||||+..++
T Consensus        12 ~~~lG~G~fg~Vy~~~~~~~--~~~~~~~~vavK~~~~~   48 (338)
T cd05102          12 GKVLGHGAFGKVVEASAFGI--DKKSSCNTVAVKMLKEG   48 (338)
T ss_pred             eeEeccCCcceEEEEEEecc--CCcccchhhheeccccc
Confidence            46799999999999986321  11223678999987654

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=85.82  E-value=3.4  Score=40.86  Aligned_cols=33  Identities=18%  Similarity=0.074  Sum_probs=24.4

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      +.|+.|+.|.||+++-...    ...|+.||||+.+.
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~----~~~~~~~aiK~~~~   34 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITG----PDAGQLYAMKVLKK   34 (318)
T ss_pred             ceeeeCCCEEEEEEEEecc----CCCCCEEEEEEEEH
Confidence            4688999999999876421    12369999998753

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=85.70  E-value=4.6  Score=38.41  Aligned_cols=32  Identities=19%  Similarity=0.223  Sum_probs=26.0

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      +.++.+..|.||+|+...       +|+.|++|...+..
T Consensus         5 ~~i~~g~~~~v~~~~~~~-------~~~~~~ik~~~~~~   36 (283)
T cd05118           5 GKIGEGTYGVVYKARDKL-------TGEIVAIKKIKLRF   36 (283)
T ss_pred             eeeecCCCceEEEEEcCC-------CCcEEEEEEecccc
Confidence            468899999999999864       26899999876654

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=85.57  E-value=5.5  Score=39.04  Aligned_cols=28  Identities=21%  Similarity=0.096  Sum_probs=23.5

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEee
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVR  324 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVq  324 (455)
                      +.++.|+.|.||+|+-..       .|+.|+||..
T Consensus        25 ~~lg~g~~g~vy~~~~~~-------~~~~v~iK~~   52 (296)
T cd06655          25 EKIGQGASGTVFTAIDVA-------TGQEVAIKQI   52 (296)
T ss_pred             EEEecCCCeEEEEEEEcC-------CCcEEEEEEE
Confidence            579999999999998754       2689999975

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=85.56  E-value=4.3  Score=40.85  Aligned_cols=39  Identities=21%  Similarity=0.186  Sum_probs=29.1

Q ss_pred             hhccccc-cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          282 EIFDGFE-EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       282 eiF~~fd-~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .++..+. .+.||.|+-|.||+|.-..       .|+.||||+....
T Consensus        14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~-------~~~~vaiK~~~~~   53 (355)
T cd07874          14 TVLKRYQNLKPIGSGAQGIVCAAYDAV-------LDRNVAIKKLSRP   53 (355)
T ss_pred             hhhhceeEEEEeeecCCEEEEEEEecC-------CCceEEEEEeCCc
Confidence            3444443 4789999999999998754       2689999986543

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=85.52  E-value=6.9  Score=37.61  Aligned_cols=34  Identities=15%  Similarity=0.239  Sum_probs=25.2

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      +.++.|+.|+||+|+....  | ...++.|+||...+
T Consensus        11 ~~lg~g~~g~vy~~~~~~~--~-~~~~~~~~ik~~~~   44 (283)
T cd05090          11 EELGECAFGKIYKGHLYLP--G-MDHAQLVAIKTLKD   44 (283)
T ss_pred             eeccccCCcceEEEEEecC--C-CCCcceEEEEeccC
Confidence            6789999999999997532  1 12368999997653

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=85.46  E-value=5.2  Score=38.88  Aligned_cols=31  Identities=16%  Similarity=0.148  Sum_probs=25.6

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.|+.|+.|+||+|..+.+       |+.||||...+.
T Consensus         6 ~~ig~G~~g~v~~~~~~~~-------~~~~avK~~~~~   36 (285)
T cd05630           6 RVLGKGGFGEVCACQVRAT-------GKMYACKKLEKK   36 (285)
T ss_pred             EEeecCCCeEEEEEEEcCC-------CceEEEEEEehh
Confidence            5689999999999998752       689999976554

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=85.35  E-value=3.9  Score=43.19  Aligned_cols=118  Identities=16%  Similarity=0.013  Sum_probs=69.0

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHH
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMM  369 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~  369 (455)
                      +-+|-|.-|+||+++-+.+       |+++|+|+........-.                                    
T Consensus        41 ~~lG~G~Fg~v~~~~~~~t-------g~~~A~K~i~k~~~~~~~------------------------------------   77 (382)
T KOG0032|consen   41 RELGRGQFGVVYLCREKST-------GKEVACKVIPKRKLRGKE------------------------------------   77 (382)
T ss_pred             hhhCCCCceEEEEEEecCC-------CceeEEEEeehhhccccc------------------------------------
Confidence            7899999999999999863       699999986543211100                                    


Q ss_pred             HhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccchhHHhhhchhhHHHHHHHHHHHHHHhhh
Q 012848          370 SQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLL  449 (455)
Q Consensus       370 ~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~l~~~~~~~~~LA~~g~~aflkmlf  449 (455)
                      ..-|.++|.+.+++...   ...-|.++..+ +-...-.||||+++|-.+-|.+-...-.+.....+....++++-. +-
T Consensus        78 ~~~~v~~Ev~il~~l~~---hpniv~l~~~~-e~~~~~~lvmEL~~GGeLfd~i~~~~~sE~da~~~~~~il~av~~-lH  152 (382)
T KOG0032|consen   78 DREDVRREVAILQQLSG---HPNIVQLKDAF-EDPDSVYLVMELCEGGELFDRIVKKHYSERDAAGIIRQILEAVKY-LH  152 (382)
T ss_pred             cHHHHHHHHHHHHhccC---CCCEEEEEEEE-EcCCeEEEEEEecCCchHHHHHHHccCCHHHHHHHHHHHHHHHHH-HH
Confidence            12244666666665432   22246777765 344456899999998766554322101222233445555554333 23


Q ss_pred             ccCCCC
Q 012848          450 VPYLNN  455 (455)
Q Consensus       450 ~dgFv~  455 (455)
                      ..|.||
T Consensus       153 ~~gvvH  158 (382)
T KOG0032|consen  153 SLGVVH  158 (382)
T ss_pred             hCCcee
Confidence            345444

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=85.17  E-value=5  Score=38.69  Aligned_cols=33  Identities=21%  Similarity=0.166  Sum_probs=27.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      -++++.|+-|.||+|+.+.+       |+.||||...++.
T Consensus        10 ~~~lg~g~~~~vy~~~~~~~-------~~~~~iK~~~~~~   42 (291)
T cd07844          10 LDKLGEGSYATVYKGRSKLT-------GQLVALKEIRLEH   42 (291)
T ss_pred             EEEEeecCCeEEEEEEEcCC-------CcEEEEEEEeccc
Confidence            37899999999999998652       6899999876543

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=85.06  E-value=4.7  Score=39.39  Aligned_cols=29  Identities=21%  Similarity=0.029  Sum_probs=23.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEee
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVR  324 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVq  324 (455)
                      -+.+++|+-|-||+|..+.+       |+.|++|+.
T Consensus        24 ~~~lg~g~~g~v~~~~~~~~-------~~~v~iK~~   52 (293)
T cd06647          24 FEKIGQGASGTVYTAIDVAT-------GQEVAIKQM   52 (293)
T ss_pred             eeEecCCCCeEEEEEEEcCC-------CCEEEEEEe
Confidence            36799999999999987541       588999975

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=85.06  E-value=4.4  Score=38.74  Aligned_cols=30  Identities=23%  Similarity=0.184  Sum_probs=24.8

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      +.++.|..|+||+|+.++.       |+.||||+...
T Consensus         7 ~~lg~g~~~~vy~~~~~~~-------~~~~~iK~~~~   36 (286)
T cd07846           7 GLVGEGSYGMVMKCKHKET-------GQIVAIKKFLE   36 (286)
T ss_pred             eeeccCCCeEEEEEEECCC-------CCEEEEEeHhh
Confidence            6789999999999998752       68999997543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=84.96  E-value=3.3  Score=41.84  Aligned_cols=32  Identities=31%  Similarity=0.163  Sum_probs=26.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+.       .|+.||||+....
T Consensus        26 ~~~lg~G~~g~V~~~~~~~-------~~~~vavK~~~~~   57 (359)
T cd07876          26 LKPIGSGAQGIVCAAFDTV-------LGINVAVKKLSRP   57 (359)
T ss_pred             EEEeecCCCEEEEEEEEcC-------CCceeEEEEeccc
Confidence            4789999999999998764       2689999987543

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=84.88  E-value=4.8  Score=38.24  Aligned_cols=32  Identities=19%  Similarity=0.120  Sum_probs=27.0

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      +.++.+..|.||+|+..++       |++||+|+.++..
T Consensus         5 ~~ig~g~~~~vy~~~~~~~-------~~~~~iK~~~~~~   36 (282)
T cd07829           5 EKLGEGTYGVVYKARDKKT-------GEIVALKKIRLDN   36 (282)
T ss_pred             hcccccCcceEEEeeecCC-------CcEEEEEEecccc
Confidence            4578999999999999752       6999999998764

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=84.73  E-value=8.2  Score=36.71  Aligned_cols=36  Identities=19%  Similarity=0.167  Sum_probs=26.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.++.|+-|+||+|+..+. .+   ....|+||+-+...
T Consensus        11 ~~~lg~g~~g~v~~~~~~~~-~~---~~~~v~ik~~~~~~   46 (270)
T cd05056          11 GRCIGEGQFGDVYQGVYMSP-EN---EKIAVAVKTCKNCT   46 (270)
T ss_pred             eeeeCCccceeEEEEEEecC-CC---CCcceEEEecCCcC
Confidence            47889999999999998652 01   13579999776654

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=84.69  E-value=4.6  Score=38.36  Aligned_cols=32  Identities=19%  Similarity=0.235  Sum_probs=26.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.++.|+.|.||+|..++.       |+.||+|+...+
T Consensus        11 ~~~ig~g~~~~v~~~~~~~~-------~~~~~~K~~~~~   42 (263)
T cd05052          11 KHKLGGGQYGEVYEGVWKKY-------SLTVAVKTLKED   42 (263)
T ss_pred             eeecCCcccceEEEEEEecC-------CceEEEEEecCC
Confidence            46799999999999998752       689999986543

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=84.58  E-value=9.6  Score=36.25  Aligned_cols=32  Identities=13%  Similarity=-0.078  Sum_probs=26.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.++.|+-|+||+|.....       |..|++|+....
T Consensus         7 ~~~lg~g~~g~vy~~~~~~~-------~~~~~~k~~~~~   38 (266)
T cd06651           7 GKLLGQGAFGRVYLCYDVDT-------GRELAAKQVQFD   38 (266)
T ss_pred             cceecCCCCEEEEEEEEcCC-------CcEEEEEEeecC
Confidence            57899999999999988652       689999975543

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=84.54  E-value=7.9  Score=36.87  Aligned_cols=35  Identities=29%  Similarity=0.504  Sum_probs=26.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+-++.+..|+||+|+.+..  |  ..+..||||..+++
T Consensus         9 ~~~lg~g~~g~v~~~~~~~~--~--~~~~~~~ik~~~~~   43 (267)
T cd05066           9 EKVIGAGEFGEVCSGRLKLP--G--KREIPVAIKTLKAG   43 (267)
T ss_pred             eeeecccCCCceEEEEEecC--C--CCceEEEEEECCCC
Confidence            46789999999999998642  2  12458999987654

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=84.44  E-value=1.1  Score=49.46  Aligned_cols=116  Identities=21%  Similarity=0.207  Sum_probs=70.3

Q ss_pred             CChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCH
Q 012848          278 RRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRL  357 (455)
Q Consensus       278 ~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l  357 (455)
                      .++..++.-|.++-+|||-.|-||-|+-+.+       |++|||||.-.-                    .+|.-     
T Consensus       558 vd~stvYQif~devLGSGQFG~VYgg~hRkt-------GrdVAvKvIdKl--------------------rFp~k-----  605 (888)
T KOG4236|consen  558 VDISTVYQIFADEVLGSGQFGTVYGGKHRKT-------GRDVAVKVIDKL--------------------RFPTK-----  605 (888)
T ss_pred             hhHHHHHHhhhHhhccCCcceeeecceeccc-------Cceeeeeeeecc--------------------cCCCc-----
Confidence            3567778888899999999999999998763       799999985311                    23321     


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCe-EeCcccCCCCCCCe-EEeecccCccccchhHHhhhchhhHHH
Q 012848          358 DESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDV-SFPKPVYPLVHPAV-LVETYEQGECVSRYVDELQGHERLKSA  435 (455)
Q Consensus       358 ~e~v~ef~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V-~vP~~~~~lst~rV-LVmE~i~G~~i~~~~~~l~~~~~~~~~  435 (455)
                                  +|=-+|+|-+-++..    . .+.| .+--.+  -+.++| .|||-++|--+.=++..  ..+    +
T Consensus       606 ------------qesqlR~EVaILq~l----~-HPGiV~le~M~--ET~ervFVVMEKl~GDMLEMILSs--Ekg----R  660 (888)
T KOG4236|consen  606 ------------QESQLRNEVAILQNL----H-HPGIVNLECMF--ETPERVFVVMEKLHGDMLEMILSS--EKG----R  660 (888)
T ss_pred             ------------hHHHHHHHHHHHHhc----C-CCCeeEEEEee--cCCceEEEEehhhcchHHHHHHHh--hcc----c
Confidence                        122346666655532    2 2333 222222  356666 57999999766544322  223    3


Q ss_pred             HHHHHHHHHHHhhhc
Q 012848          436 LAHIGTHALLKMLLV  450 (455)
Q Consensus       436 LA~~g~~aflkmlf~  450 (455)
                      |-.+.++.++.||++
T Consensus       661 L~er~TkFlvtQIL~  675 (888)
T KOG4236|consen  661 LPERITKFLVTQILV  675 (888)
T ss_pred             chHHHHHHHHHHHHH
Confidence            444555555555543

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=84.18  E-value=6.3  Score=39.46  Aligned_cols=31  Identities=26%  Similarity=0.204  Sum_probs=25.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .++|+.+..|.||+|+-+.       .|+.||||+...
T Consensus        15 ~~~ig~g~~g~v~~~~~~~-------~~~~vaiK~~~~   45 (328)
T cd07856          15 LQPVGMGAFGLVCSARDQL-------TGQNVAIKKIMK   45 (328)
T ss_pred             EEeecccCCeEEEEEEECC-------CCCEEEEEEecc
Confidence            4799999999999999764       268999997654

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=84.08  E-value=5  Score=47.16  Aligned_cols=33  Identities=18%  Similarity=0.073  Sum_probs=26.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.||.|+-|.||+|+.+..       |+.||||+.+.+.
T Consensus         7 i~~LGkGgfG~VYlA~d~~t-------g~~VAIK~I~~~l   39 (932)
T PRK13184          7 IRLIGKGGMGEVYLAYDPVC-------SRRVALKKIREDL   39 (932)
T ss_pred             EEEEecCCCEEEEEEEECCC-------CcEEEEEEECccc
Confidence            36789999999999987642       6899999887543

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=84.01  E-value=13  Score=35.76  Aligned_cols=40  Identities=25%  Similarity=0.320  Sum_probs=27.3

Q ss_pred             cccccccCcceEEEeEecccCC---------CCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYP---------GQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~---------G~~~~G~~VAVKVqrPgV  328 (455)
                      .+-+|.|+.|.||+|+..+.-.         .....+..||+|+.+++.
T Consensus        10 ~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~   58 (296)
T cd05051          10 VEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDA   58 (296)
T ss_pred             cccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCcc
Confidence            4678999999999999865200         011234678999877664

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=83.45  E-value=9.7  Score=37.11  Aligned_cols=32  Identities=28%  Similarity=0.405  Sum_probs=23.8

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.|+.|+.|+||+|+++++  |   ....|++|+.+
T Consensus         7 ~~~lg~g~~g~v~~~~~~~~--~---~~~~~~ik~~~   38 (297)
T cd05089           7 EDVIGEGNFGQVIRAMIKKD--G---LKMNAAIKMLK   38 (297)
T ss_pred             eeeecCCCcceEEEEEecCC--C---CcceeEEEEcc
Confidence            56799999999999999762  2   12357888654

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=83.35  E-value=2.3  Score=40.43  Aligned_cols=76  Identities=16%  Similarity=0.117  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHhCCCCCeEeCcccCCCC------CCCeEEeecccCc-cccchhHHhh-hchhhHHHHHHHHHHHHH
Q 012848          374 LAREAAHLSRFIYNFRRWKDVSFPKPVYPLV------HPAVLVETYEQGE-CVSRYVDELQ-GHERLKSALAHIGTHALL  445 (455)
Q Consensus       374 fr~EA~nl~rf~~~f~~~~~V~vP~~~~~ls------t~rVLVmE~i~G~-~i~~~~~~l~-~~~~~~~~LA~~g~~afl  445 (455)
                      ..+|.+|+.++.+     ..|.+|+|+.-..      .+.+|+||+++|. ++.++..... .....++.+...+.+ ++
T Consensus        58 a~~E~~~~~~L~~-----~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~~~~~~~~~~ll~~l~~-~i  131 (206)
T PF06293_consen   58 AKREWRNLQRLRE-----AGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWEQLDPSQRRELLRALAR-LI  131 (206)
T ss_pred             HHHHHHHHHHHHH-----cCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhcccchhhHHHHHHHHHH-HH
Confidence            4778889988875     3788899874211      3448999999995 6777654311 122234555555554 45


Q ss_pred             HhhhccCCCC
Q 012848          446 KMLLVPYLNN  455 (455)
Q Consensus       446 kmlf~dgFv~  455 (455)
                      ..|-..|++|
T Consensus       132 ~~lH~~gi~H  141 (206)
T PF06293_consen  132 AKLHDAGIYH  141 (206)
T ss_pred             HHHHHCcCCC
Confidence            5667777776

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=83.13  E-value=5.2  Score=44.05  Aligned_cols=33  Identities=21%  Similarity=0.270  Sum_probs=28.4

Q ss_pred             ccc-cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          286 GFE-EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       286 ~fd-~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      +|| -++||=|.-|+|+.|+-+++       |.-.|+|+.+
T Consensus       142 DFe~Lk~IgkGAfGeVrLarKk~T-------g~iyAmK~Lk  175 (550)
T KOG0605|consen  142 DFELLKVIGKGAFGEVRLARKKDT-------GEIYAMKILK  175 (550)
T ss_pred             cchhheeeccccceeEEEEEEccC-------CcEEeeeccc
Confidence            465 48999999999999999984       6999999765

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=83.04  E-value=9.8  Score=37.44  Aligned_cols=42  Identities=24%  Similarity=0.178  Sum_probs=31.3

Q ss_pred             hCCChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          276 FGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       276 lG~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      +....++.|..  ...++.|+.|+||+|+.+.+       |+.||||....
T Consensus         9 ~~~~~~~~~~~--~~~lg~g~~g~v~~~~~~~~-------~~~~~ik~~~~   50 (308)
T cd06634           9 FKDDPEKLFSD--LREIGHGSFGAVYFARDVRN-------SEVVAIKKMSY   50 (308)
T ss_pred             hcCCcHHHHHH--HHheeeCCCEEEEEEEEcCC-------CcEEEEEEEec
Confidence            44556666653  46699999999999998752       68999996643

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=82.92  E-value=15  Score=34.69  Aligned_cols=32  Identities=22%  Similarity=0.363  Sum_probs=24.3

Q ss_pred             cccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          291 PVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       291 PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      -++.|+-|-||+|+.+..     ..+..||||+....
T Consensus         2 ~lg~G~~g~v~~~~~~~~-----~~~~~~aiK~~~~~   33 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMK-----KSEKTVAVKILKND   33 (257)
T ss_pred             cCCCcCCcceEEeEEecC-----CCceEEEEEEccCC
Confidence            378899999999987542     12589999997644

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=82.67  E-value=8.2  Score=36.24  Aligned_cols=29  Identities=10%  Similarity=0.012  Sum_probs=24.1

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEee
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVR  324 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVq  324 (455)
                      .+.++.|+.|.||+++.+.+       |+.||||..
T Consensus         5 ~~~lg~g~~g~~~~~~~~~~-------~~~~~ik~~   33 (256)
T cd08218           5 VKKIGEGSFGKAILVKSKED-------GKQYVIKEI   33 (256)
T ss_pred             EEEeccCCceEEEEEEEcCC-------CCEEEEEEE
Confidence            46789999999999998752       689999964

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=82.29  E-value=5.3  Score=40.46  Aligned_cols=31  Identities=23%  Similarity=0.158  Sum_probs=24.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.||.|+-|.||+|+.+..  +    +..||||+..
T Consensus        35 ~~~ig~G~~g~Vy~a~~~~~--~----~~~vavK~~~   65 (340)
T PTZ00426         35 IRTLGTGSFGRVILATYKNE--D----FPPVAIKRFE   65 (340)
T ss_pred             EEEEeecCCeEEEEEEEECC--C----CeEEEEEEEE
Confidence            47899999999999997642  1    4789999763

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=82.09  E-value=5.1  Score=46.35  Aligned_cols=30  Identities=13%  Similarity=0.070  Sum_probs=25.1

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      ++.++.|.-|.||+|+.+.+       |+.||||...
T Consensus       695 ~~~ig~G~~g~Vy~~~~~~~-------~~~vavK~~~  724 (968)
T PLN00113        695 ENVISRGKKGASYKGKSIKN-------GMQFVVKEIN  724 (968)
T ss_pred             ccEEccCCCeeEEEEEECCC-------CcEEEEEEcc
Confidence            56899999999999998652       6899999754

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=82.08  E-value=15  Score=36.59  Aligned_cols=39  Identities=28%  Similarity=0.275  Sum_probs=25.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .++|+.|+-|+||+|.-.........++..||||+.+.+
T Consensus        17 ~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~   55 (334)
T cd05100          17 GKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDD   55 (334)
T ss_pred             cceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccc
Confidence            478999999999999864310001112458999987543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>PTZ00284 protein kinase; Provisional

Probab=82.08  E-value=5.4  Score=42.24  Aligned_cols=30  Identities=27%  Similarity=0.212  Sum_probs=25.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.||.|+-|.||+|+.+..       |+.||||+.+
T Consensus       134 ~~~lG~G~fg~V~~a~~~~~-------~~~vAvK~i~  163 (467)
T PTZ00284        134 LSLLGEGTFGKVVEAWDRKR-------KEYCAVKIVR  163 (467)
T ss_pred             EEEEEeccCEEEEEEEEcCC-------CeEEEEEEEe
Confidence            36799999999999998652       6899999874

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=82.08  E-value=2.7  Score=44.18  Aligned_cols=32  Identities=19%  Similarity=0.141  Sum_probs=27.0

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .-+|+|+=|=|++++.+.+       |+-.|+|+.+=++
T Consensus        85 ~~lG~G~gG~V~kv~Hk~t-------~~i~AlK~I~~~~  116 (364)
T KOG0581|consen   85 GVLGSGNGGTVYKVRHKPT-------GKIYALKVILLNI  116 (364)
T ss_pred             hhcccCCCcEEEEEEEcCC-------CeEEEEEeecccC
Confidence            6789999999999999863       6999999985444

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=81.88  E-value=16  Score=35.02  Aligned_cols=36  Identities=25%  Similarity=0.231  Sum_probs=25.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      -+.|+.|.-|.||+|+.+.+  |. ....+||||+....
T Consensus        12 ~~~lg~G~~g~vy~~~~~~~--~~-~~~~~va~K~~~~~   47 (279)
T cd05109          12 VKVLGSGAFGTVYKGIWIPD--GE-NVKIPVAIKVLREN   47 (279)
T ss_pred             eeecCCCCCceEEEEEEecC--CC-ccceEEEEEEecCC
Confidence            37899999999999997642  31 11246899987644

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=81.73  E-value=15  Score=35.04  Aligned_cols=32  Identities=22%  Similarity=0.315  Sum_probs=23.3

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      +.+|.|.-|.||+|+++++  |   ....|++|+.+.
T Consensus         1 ~~lg~g~~g~v~~~~~~~~--~---~~~~~~~k~~~~   32 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKD--G---LRMDAAIKRMKE   32 (270)
T ss_pred             CcCCCCCCceEEEEEEcCC--C---CeeEEEEEEccc
Confidence            3688999999999999752  2   124578887654

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=81.72  E-value=5  Score=37.82  Aligned_cols=31  Identities=23%  Similarity=0.318  Sum_probs=25.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.++.|+-|-||+|+.++        ++.|++|+....
T Consensus        11 ~~~ig~g~~~~vy~~~~~~--------~~~~~~k~~~~~   41 (261)
T cd05148          11 ERKLGSGYFGEVWEGLWKN--------RVRVAIKILKSD   41 (261)
T ss_pred             hhhhccCCCccEEEeEecC--------CCcEEEEecccc
Confidence            3567899999999999975        589999986543

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=81.51  E-value=15  Score=36.02  Aligned_cols=19  Identities=21%  Similarity=0.417  Sum_probs=16.8

Q ss_pred             cccccccCcceEEEeEecc
Q 012848          289 EAPVASGSIAQVHRASLRF  307 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~  307 (455)
                      .+.+|.|+.|+||+|+.++
T Consensus        12 ~~~lg~G~~g~V~~a~~~~   30 (303)
T cd05088          12 QDVIGEGNFGQVLKARIKK   30 (303)
T ss_pred             eeeecCCCCceEEEEEEcc
Confidence            4779999999999999875

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=81.50  E-value=7.2  Score=38.75  Aligned_cols=29  Identities=17%  Similarity=0.166  Sum_probs=22.2

Q ss_pred             cccc--CcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          292 VASG--SIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       292 iASA--SIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      ||.|  +.+.||+++.+.+       |+.||||+....
T Consensus         6 ig~G~~~~~~v~~~~~~~~-------~~~vaiK~~~~~   36 (327)
T cd08227           6 IGRGFEDLMTVNLARYKPT-------GEYVTVRRINLE   36 (327)
T ss_pred             ccccccceEEEEEEeeccc-------CcEEEEEEechh
Confidence            4555  8899999999752       699999976543

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=81.42  E-value=11  Score=36.58  Aligned_cols=36  Identities=19%  Similarity=0.200  Sum_probs=24.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      ...++.|+-|.||+|+....  +....+..|++|....
T Consensus        10 ~~~lg~g~~g~vy~~~~~~~--~~~~~~~~~~~k~~~~   45 (291)
T cd05094          10 KRELGEGAFGKVFLAECYNL--SPTKDKMLVAVKALKD   45 (291)
T ss_pred             eeeecccCCCeEEEeEeecc--CCCCcceeeEEEecCC
Confidence            36788899999999986431  1112356788887653

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=81.38  E-value=10  Score=37.99  Aligned_cols=31  Identities=29%  Similarity=0.049  Sum_probs=26.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .++|+.|+-|.||+|+.+.+       |+.||||+...
T Consensus        10 ~~~Lg~g~~g~vy~~~~~~~-------~~~v~iK~i~~   40 (342)
T cd07854          10 LRPLGCGSNGLVFSAVDSDC-------DKRVAVKKIVL   40 (342)
T ss_pred             EEEecCCCCEEEEEEEECCC-------CcEEEEEEEec
Confidence            57899999999999998752       68999997643

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=81.34  E-value=19  Score=34.74  Aligned_cols=37  Identities=24%  Similarity=0.238  Sum_probs=27.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+++|.|+-|.||+|+.+..  +....+..||||+.+.+
T Consensus        17 ~~~ig~g~~g~v~~~~~~~~--~~~~~~~~~a~k~~~~~   53 (293)
T cd05053          17 GKPLGEGAFGQVVKAEAVGL--DNPNETSTVAVKMLKDD   53 (293)
T ss_pred             eeEecccccccEEEEEEecC--CCCCCceeEEEEEccCC
Confidence            36899999999999998742  11123578999987764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=81.34  E-value=3.8  Score=38.94  Aligned_cols=18  Identities=11%  Similarity=0.318  Sum_probs=15.7

Q ss_pred             ccccccCcceEEEeEecc
Q 012848          290 APVASGSIAQVHRASLRF  307 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~  307 (455)
                      ++||.|+-|+||+|+.+.
T Consensus         1 ~~lg~G~~~~Vy~~~~~~   18 (258)
T cd05078           1 ESLGQGTFTKIFKGIRRE   18 (258)
T ss_pred             CCCCcccchhheeeeecc
Confidence            478999999999999865

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=81.10  E-value=10  Score=35.29  Aligned_cols=30  Identities=13%  Similarity=0.155  Sum_probs=24.7

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      +.+++|.-|.||+|....       .|+.||+|+...
T Consensus         6 ~~lg~g~~~~v~~~~~~~-------~~~~~~~k~~~~   35 (265)
T cd08217           6 ETIGKGSFGTVRKVRRKS-------DGKILVWKEIDY   35 (265)
T ss_pred             eeeccCCCeEEEEeeecC-------CCCEEEEEEEec
Confidence            678999999999998765       268999997653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=81.03  E-value=7  Score=39.00  Aligned_cols=31  Identities=23%  Similarity=0.252  Sum_probs=25.8

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.++.|.-|.||+|+.+.+       |+.||||+..|
T Consensus        10 ~~~lg~G~~g~vy~~~~~~~-------~~~vaiK~~~~   40 (336)
T cd07849          10 LSYIGEGAYGMVCSATHKPT-------GVKVAIKKISP   40 (336)
T ss_pred             EEEEEecCCeEEEEEEEcCC-------CCeEEEEEecc
Confidence            46789999999999987642       68999998765

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=80.90  E-value=9.5  Score=36.68  Aligned_cols=28  Identities=11%  Similarity=0.134  Sum_probs=23.7

Q ss_pred             ccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          292 VASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       292 iASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      ++.|+.|+||+++.+..       |+.+|+|+-.+
T Consensus        24 lg~g~~g~v~~~~~~~~-------~~~~~~k~~~~   51 (267)
T PHA03390         24 LIDGKFGKVSVLKHKPT-------QKLFVQKIIKA   51 (267)
T ss_pred             ecCCCceEEEEEEEcCC-------CcEEEEEEEeh
Confidence            69999999999998752       68999999654

>PRK05231 homoserine kinase; Provisional

Probab=80.76  E-value=15  Score=36.71  Aligned_cols=50  Identities=8%  Similarity=-0.026  Sum_probs=35.0

Q ss_pred             CCCCHHHHHHHHHHHhCCChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          261 PEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       261 pp~~~~~v~~vle~elG~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.+.+++++++ +.+|.  .++   .+-+|++.|...++|+-+..+        | ..++|+-+
T Consensus         5 t~ls~~~l~~~l-~~y~~--~~~---~~~~~l~~G~~n~~y~v~t~~--------g-~~vLK~~~   54 (319)
T PRK05231          5 TDVSDDELAAFL-APYDL--GEL---LSLKGIAEGIENSNFFLTTTQ--------G-EYVLTLFE   54 (319)
T ss_pred             ccCCHHHHHHHH-HhcCC--chh---hccchhccccccceEEEEeCC--------C-cEEEEEec
Confidence            456777887887 67775  121   234789999999999987642        3 68889754

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=80.66  E-value=8.5  Score=38.94  Aligned_cols=31  Identities=26%  Similarity=0.140  Sum_probs=25.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|+||+|+-+..       |+.||||+...
T Consensus        29 ~~~lg~G~~g~V~~~~~~~~-------~~~vaiK~~~~   59 (364)
T cd07875          29 LKPIGSGAQGIVCAAYDAIL-------ERNVAIKKLSR   59 (364)
T ss_pred             EEEeecCCCeEEEEEEECCC-------CcEEEEEEeCc
Confidence            47899999999999987642       68999998654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=80.56  E-value=3.4  Score=44.38  Aligned_cols=32  Identities=22%  Similarity=0.188  Sum_probs=26.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+-+|+|--|-|-.|.=+.+       |+.|||||.+-.
T Consensus       177 ~~~LGsGafg~Vkla~e~~t-------gk~vAiKIi~kr  208 (475)
T KOG0615|consen  177 SKTLGSGAFGLVKLAYEKKT-------GKQVAIKIINKR  208 (475)
T ss_pred             eeeecCCceeEEEEEEEccc-------CcEEEeeeeehh
Confidence            57789999999999988763       799999997753

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=80.49  E-value=2.7  Score=45.28  Aligned_cols=103  Identities=17%  Similarity=0.218  Sum_probs=58.9

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHH
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMM  369 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~  369 (455)
                      +-+|.|--|-|-+|+-+.       .|+.||||-.+-+--+ =+.||--++.-..++                       
T Consensus        59 etLGkGTYGKVk~A~e~~-------sgR~VAiKsIrKdkIk-deqDlvhIRREIeIM-----------------------  107 (668)
T KOG0611|consen   59 ETLGKGTYGKVKLAYEHK-------SGREVAIKSIRKDKIK-DEQDLVHIRREIEIM-----------------------  107 (668)
T ss_pred             HHhcCCcccceeehhhcc-------CCcEeehhhhhhhhcc-cHHHHHHHHHHHHHH-----------------------
Confidence            467899999999998754       2799999966544211 022332222222221                       


Q ss_pred             HhcCHHHHHHHHHHHHHHhCCCCC-eEeCcccCCCCCCCeEEeecccCccccchhHHhhhchhhHHHHHHHHHHHHHHhh
Q 012848          370 SQVDLAREAAHLSRFIYNFRRWKD-VSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKML  448 (455)
Q Consensus       370 ~ELDfr~EA~nl~rf~~~f~~~~~-V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~l~~~~~~~~~LA~~g~~aflkml  448 (455)
                                  ..    + +.+. +.|=+| .+-..+-|+||||-.|--+.||+..   .    ..|..+-.+-|++||
T Consensus       108 ------------Ss----L-NHPhII~IyEV-FENkdKIvivMEYaS~GeLYDYiSe---r----~~LsErEaRhfFRQI  162 (668)
T KOG0611|consen  108 ------------SS----L-NHPHIIQIYEV-FENKDKIVIVMEYASGGELYDYISE---R----GSLSEREARHFFRQI  162 (668)
T ss_pred             ------------hh----c-CCCceeehhhh-hcCCceEEEEEEecCCccHHHHHHH---h----ccccHHHHHHHHHHH
Confidence                        11    1 1222 233333 2346677999999999999988754   2    234444444555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	455
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 3e-09
 Identities = 75/510 (14%), Positives = 138/510 (27%), Gaps = 123/510 (24%)

Query: 2   SRVLTFRNIWR-----AAQSVLTNERGYHSELTKYG-------AVVAVGLRVPYYRFYSH 49
           ++V    N+ R       +  L   R     +   G        V         Y+    
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRP-AKNVLIDGVLGSGKTWVALDVCL--SYKVQCK 179

Query: 50  YGFP----SGGHCSVPVYNVKQL--LCRSCSVRSLSVASASS---VATHQAQIAWKRLFY 100
             F     +  +C+ P   ++ L  L         S +  SS   +  H  Q   +RL  
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 101 YSSFR------DQIFPCISRIAQAFSLALTRSPLLVPGIIAFTSGQLAWAQRVSAETEYF 154
              +         +    ++   AF+L      +L+      T+        +SA T   
Sbjct: 240 SKPYENCLLVLLNV--QNAKAWNAFNL---SCKILL------TTRFKQVTDFLSAATTTH 288

Query: 155 PSQNAFYTRAQDGHAFVTSVLYSLVECVILLMRALYLGVLFS--PSIMMA--PFADS-FG 209
            S +              S+  +  E   LL    YL       P  ++   P   S   
Sbjct: 289 ISLDHH------------SMTLTPDEVKSLL--LKYLDCRPQDLPREVLTTNPRRLSIIA 334

Query: 210 PQFREL------WLHVVLRTLETAGPAFIKWGQWAATRP---DL--FPRD-------LCK 251
              R+       W HV    L T   + +   + A  R     L  FP         L  
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394

Query: 252 KLSELHSKAPEHSFA--YTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRY 309
              ++            +    +E+        I   + E  V   +   +HR S+   Y
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR-SIVDHY 453

Query: 310 PGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMM 369
                                +I + F           +IP      LD+         +
Sbjct: 454 ---------------------NIPKTF-------DSDDLIP----PYLDQYFYSHIGHHL 481

Query: 370 SQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGH 429
             ++             +F R+ +               ++ T +Q +    Y+ +    
Sbjct: 482 KNIEHPERMTLFRMVFLDF-RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540

Query: 430 -ERLKSALAH----IGTHALLKMLLVPYLN 454
            ERL +A+      I  +    ++   Y +
Sbjct: 541 YERLVNAILDFLPKIEEN----LICSKYTD 566

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	455
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.55
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	98.65
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	98.57
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	98.44
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	98.26
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	98.07
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	98.03
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.42
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	97.35
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	97.18
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	97.13
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	97.0
3uqc_A	286	Probable conserved transmembrane protein; structur	96.99
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	96.68
3an0_A	340	Dual specificity mitogen-activated protein kinase;	96.64
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	96.58
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	96.58
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	96.48
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	96.48
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	96.46
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	96.35
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	96.34
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	96.3
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	96.26
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	96.26
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	96.23
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	96.21
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	96.15
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	96.14
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	96.09
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	96.08
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	96.07
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	96.04
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	96.04
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	96.03
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	96.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	95.97
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	95.95
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	95.87
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	95.86
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	95.86
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	95.84
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	95.84
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	95.84
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	95.84
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	95.81
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	95.77
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	95.7
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	95.69
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	95.68
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	95.67
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	95.67
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	95.6
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	95.59
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	95.55
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	95.55
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	95.49
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	95.46
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	95.44
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	95.42
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	95.41
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	95.41
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	95.4
2a19_B	284	Interferon-induced, double-stranded RNA-activated	95.38
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	95.38
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	95.38
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	95.37
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	95.37
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	95.33
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	95.31
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	95.3
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	95.28
3bhy_A	283	Death-associated protein kinase 3; death associate	95.26
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	95.25
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	95.22
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	95.22
3ork_A	311	Serine/threonine protein kinase; structural genomi	95.2
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	95.2
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	95.14
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	95.13
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	95.1
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	95.08
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	95.06
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	95.05
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	95.04
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	95.02
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	95.02
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	95.02
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	94.99
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	94.99
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	94.98
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	94.97
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	94.96
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	94.92
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	94.88
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	94.84
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	94.83
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	94.83
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	94.82
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	94.81
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	94.79
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	94.78
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	94.78
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	94.78
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	94.78
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	94.77
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	94.76
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	94.76
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	94.71
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	94.69
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	94.68
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	94.67
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	94.66
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	94.66
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	94.64
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	94.64
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	94.63
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	94.6
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	94.58
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	94.58
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	94.56
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	94.49
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	94.45
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	94.43
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	94.43
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	94.43
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	94.41
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	94.41
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	94.41
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	94.4
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	94.39
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	94.38
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	94.38
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	94.35
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	94.35
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	94.34
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	94.3
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	94.24
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	94.2
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	94.19
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	94.16
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	94.15
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	94.13
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	94.1
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	94.08
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	94.06
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	94.05
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	94.05
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	94.03
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	94.03
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	94.02
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	94.02
3q4u_A	301	Activin receptor type-1; structural genomics conso	93.95
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	93.95
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	93.9
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	93.86
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	93.84
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	93.8
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	93.69
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	93.68
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	93.67
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	93.64
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	93.6
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	93.59
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	93.59
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	93.57
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	93.56
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	93.54
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	93.46
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	93.43
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	93.41
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	93.4
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	93.37
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	93.34
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	93.31
3o0g_A	292	Cell division protein kinase 5; kinase activator c	93.31
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	93.25
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	93.24
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	93.22
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	93.18
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	93.17
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	93.15
3fme_A	290	Dual specificity mitogen-activated protein kinase;	93.15
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	93.08
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	93.03
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	93.02
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	92.98
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	92.96
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	92.94
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	92.9
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	92.85
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	92.84
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	92.81
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	92.79
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	92.79
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	92.78
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	92.73
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	92.67
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	92.65
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	92.64
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	92.63
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	92.6
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	92.54
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	92.52
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	92.47
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	92.46
3pls_A	298	Macrophage-stimulating protein receptor; protein k	92.42
3soc_A	322	Activin receptor type-2A; structural genomics cons	92.42
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	92.39
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	92.3
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	92.24
3aln_A	327	Dual specificity mitogen-activated protein kinase;	92.18
3ats_A	357	Putative uncharacterized protein; hypothetical pro	92.16
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	92.16
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	92.11
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	92.05
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	91.99
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	91.91
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	91.85
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	91.71
3niz_A	311	Rhodanese family protein; structural genomics, str	91.69
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	91.6
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	91.54
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	91.51
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	91.45
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	91.41
2dyl_A	318	Dual specificity mitogen-activated protein kinase	91.38
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	91.37
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	91.24
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	91.19
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	91.15
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	91.12
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	91.06
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	91.02
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	90.57
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	90.51
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	90.46
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	90.45
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	90.4
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	90.35
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	90.31
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	90.22
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	90.03
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	89.97
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	89.89
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	89.68
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	89.1
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	88.33
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	87.75
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	87.55
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	87.52
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	87.37
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	86.94
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	86.82
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	86.52
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	86.39
3rp9_A	458	Mitogen-activated protein kinase; structural genom	86.29
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	85.89
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	84.62
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	84.47
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	84.42
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	83.64
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	81.15
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	80.77
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	80.56

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.55  E-value=1.6e-15  Score=151.86  Aligned_cols=167  Identities=12%  Similarity=0.011  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHcCchHH-HHHHHHhcCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhCCChHhhcccccc----
Q 012848          215 LWLHVVLRTLETAGPAFI-KWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEE----  289 (455)
Q Consensus       215 ~w~~~l~~~le~lGp~fI-KlGQ~lStR~DLlP~e~~~~L~~LqD~vpp~~~~~v~~vle~elG~~~~eiF~~fd~----  289 (455)
                      +.++++.+.+..+|+..+ +++|.+...++.. ++++.++++|+|.+|+.+++.+.+.++.++|.+..+.|.+|++    
T Consensus        20 ~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~   98 (365)
T 2y7j_A           20 RRARREIRHLPNLNREQRRAFIRSLRDDPSQS-ANLLAEAKKLNDAQPKGTENLYFQSMGPEDELPDWAAAKEFYQKYDP   98 (365)
T ss_dssp             ---------------------------------------------------------------CBCHHHHHHHHHHHEEE
T ss_pred             HHHHHHHhcCccchhcccccccccccCCCchh-HHHHHHHHhhhhcCCCCccccccccCCchhhcccchhhhhhhhhccc
Confidence            346677888889999998 8899988887765 4566789999999999999999999999999999999988887    


Q ss_pred             -ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          290 -APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       290 -~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                       ++||+|+.||||+|+.+.+       |+.|||||++|+.......|+.                         ++.+.+
T Consensus        99 ~~~lg~G~~g~Vy~a~~~~~-------g~~vavK~~~~~~~~~~~~~~~-------------------------~~~~~~  146 (365)
T 2y7j_A           99 KDVIGRGVSSVVRRCVHRAT-------GHEFAVKIMEVTAERLSPEQLE-------------------------EVREAT  146 (365)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------CCEEEEEEEETTSSCCCHHHHH-------------------------HHHHHH
T ss_pred             ceEEecCCCEEEEEEEECCC-------CcEEEEEEEEccccccCHHHHH-------------------------HHHHHH
Confidence             9999999999999999752       6999999999987655544442                         222223


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccchhH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVD  424 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~  424 (455)
                      ..      |...+.++    .+.+.|.-+..+++..+..+|||||++|.++.+++.
T Consensus       147 ~~------E~~~l~~l----~~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~  192 (365)
T 2y7j_A          147 RR------ETHILRQV----AGHPHIITLIDSYESSSFMFLVFDLMRKGELFDYLT  192 (365)
T ss_dssp             HH------HHHHHHHH----TTCTTBCCEEEEEEBSSEEEEEECCCTTCBHHHHHH
T ss_pred             HH------HHHHHHHh----cCCCCEeEEEEEEeeCCEEEEEEEeCCCCcHHHHHH
Confidence            33      33333333    245666666666667888999999999999988764

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=98.65  E-value=2e-08  Score=107.23  Aligned_cols=85  Identities=13%  Similarity=0.144  Sum_probs=70.0

Q ss_pred             HHHHHhcCCCCCCH----HHHHHHH---------------------hhhcCCCCCCHHHHHHH----HHHHhCCChHhhc
Q 012848          234 WGQWAATRPDLFPR----DLCKKLS---------------------ELHSKAPEHSFAYTKKT----IERAFGRRLSEIF  284 (455)
Q Consensus       234 lGQ~lStR~DLlP~----e~~~~L~---------------------~LqD~vpp~~~~~v~~v----le~elG~~~~eiF  284 (455)
                      +||+++|++|++|+    +..+++.                     +++|++|+.+++.+.++    .++.++..+++++
T Consensus        72 ~~~f~~t~~~~~~~~~~~~~i~e~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~v~~v~~~~~~~l~~~~~~~~~  151 (543)
T 3c4z_A           72 FQQFLRTHEQHGPALQLWKDIEDYDTADDALRPQKAQALRAAYLEPQAQLFCSFLDAETVARARAGAGDGLFQPLLRAVL  151 (543)
T ss_dssp             HHHHHHHCGGGHHHHHHHHHHHHHHTSCTTTHHHHHHHHHHHHTSTTCTTCCTTSCHHHHHHHHCC---CTTHHHHHHHH
T ss_pred             HHHHHhcCCchhHHHHHHhhhhhhccCchhhHHHHHHHHHHHhhCchhhhhhccCCHHHHhhhhcCCCchhhHHHHHHHH
Confidence            38899999999999    8888888                     89999999999998887    5555555667777


Q ss_pred             ccccccc----------------------------------ccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          285 DGFEEAP----------------------------------VASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       285 ~~fd~~P----------------------------------iASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      ..+++.|                                  ||.|+.|+||+|+.+.+       |+.||||+..
T Consensus       152 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~LG~G~fG~Vy~a~~~~t-------g~~vAiK~l~  219 (543)
T 3c4z_A          152 AHLGQAPFQEFLDSLYFLRFLQWKWLEAQPMGEDWFLDFRVLGRGGFGEVFACQMKAT-------GKLYACKKLN  219 (543)
T ss_dssp             HHHTTHHHHHHHTSHHHHHHHHHHHHHTSCCCGGGEEEEEEEEECSSSEEEEEEETTT-------CCEEEEEEEE
T ss_pred             HhhhcCchHhhhhhhhhhhhhhhhhhhcccCChhheEEEEEEeeCCCeEEEEEEECCC-------CcEEEEEEEE
Confidence            7666666                                  99999999999998752       6999999864

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=98.57  E-value=7.4e-08  Score=94.20  Aligned_cols=154  Identities=14%  Similarity=0.050  Sum_probs=85.9

Q ss_pred             HHHHHHhhhcCCCCCCHHHHHHHHHHHhCCChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          249 LCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       249 ~~~~L~~LqD~vpp~~~~~v~~vle~elG~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .-.....|.-..++.+++++++.++..++.+....+-++. ++||.|+.|+||+|+.+.+       |+.||||+.+++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lg~G~~g~V~~a~~~~~-------g~~vavK~~~~~~   82 (321)
T 2c30_A           11 VDLGTENLYFQSGVVTHEQFKAALRMVVDQGDPRLLLDSY-VKIGEGSTGIVCLAREKHS-------GRQVAVKMMDLRK   82 (321)
T ss_dssp             --------------CCHHHHHHHHHTTSCSSCHHHHEEEE-EEEEEETTEEEEEEEETTT-------CCEEEEEEEETTT
T ss_pred             hhhhccceeecCCcCcHHHHHHHHhhccCCCCchhhhhcc-EEeccCCCeEEEEEEECCC-------CcEEEEEEEeccc
Confidence            3334456667778999999999999999876555443333 4899999999999998752       6999999987764


Q ss_pred             ccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCe
Q 012848          329 GESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAV  408 (455)
Q Consensus       329 ~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rV  408 (455)
                      ....+.                                       +.+|+..+.++.     .+++.-+.-+........
T Consensus        83 ~~~~~~---------------------------------------~~~E~~~l~~l~-----h~niv~~~~~~~~~~~~~  118 (321)
T 2c30_A           83 QQRREL---------------------------------------LFNEVVIMRDYQ-----HFNVVEMYKSYLVGEELW  118 (321)
T ss_dssp             CCSHHH---------------------------------------HHHHHHHHTTCC-----CTTBCCEEEEEEETTEEE
T ss_pred             hhHHHH---------------------------------------HHHHHHHHHhCC-----CCCcceEEEEEEECCEEE
Confidence            321110                                       344555554331     233221111222345678


Q ss_pred             EEeecccCccccchhHHhhhchhhHHHHHHHHHHHHHHhhhccCCCC
Q 012848          409 LVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVPYLNN  455 (455)
Q Consensus       409 LVmE~i~G~~i~~~~~~l~~~~~~~~~LA~~g~~aflkmlf~dgFv~  455 (455)
                      |||||++|..+.++++...-.......++..++++ +..|-..|++|
T Consensus       119 lv~e~~~~~~L~~~l~~~~l~~~~~~~i~~qi~~~-L~~LH~~~ivH  164 (321)
T 2c30_A          119 VLMEFLQGGALTDIVSQVRLNEEQIATVCEAVLQA-LAYLHAQGVIH  164 (321)
T ss_dssp             EEECCCCSCBHHHHHTTCCCCHHHHHHHHHHHHHH-HHHHHHTTEEC
T ss_pred             EEEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHCCeec
Confidence            99999999999887643111112223333333332 34445566665

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=98.44  E-value=5.6e-07  Score=89.75  Aligned_cols=82  Identities=9%  Similarity=0.008  Sum_probs=63.9

Q ss_pred             HhcCCCCCCHHHHHHHHhhh-cCCCCCCHHHHHHHHHHHhCCChHhhc---ccc-------c-cccccccCcceEEEeEe
Q 012848          238 AATRPDLFPRDLCKKLSELH-SKAPEHSFAYTKKTIERAFGRRLSEIF---DGF-------E-EAPVASGSIAQVHRASL  305 (455)
Q Consensus       238 lStR~DLlP~e~~~~L~~Lq-D~vpp~~~~~v~~vle~elG~~~~eiF---~~f-------d-~~PiASASIAQVHrA~L  305 (455)
                      -++++|++++++.+++.+++ +.+++.+...+...+.+++- +.+..+   .++       . .++||.|+.|+||+|+.
T Consensus        16 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~y~~~~~lG~G~~g~V~~a~~   94 (377)
T 3byv_A           16 FQGPGDVVIEELFNRIPQANVRTTSEYMQSAADSLVSTSLW-NTGQPFRVESELGERPRTLVRGTVLGQEDPYAYLEATD   94 (377)
T ss_dssp             -CCTTHHHHHHHHHHCGGGCCCSTTC-CHHHHHHHHHHHTC-C-CCEEEEEESSSCCCEEEEEEEEEEEETTEEEEEEEC
T ss_pred             CCCCchHHHHHHHHhCcccccccccccccchhhhhhHHHhc-CCCCcEEEEeecCCCCceEEEcceeecCCCEEEEEEEE
Confidence            36889999999999999999 99999999999999988872 222222   222       2 58999999999999998


Q ss_pred             cccCCCCCcCCeEEEEEeeCCC
Q 012848          306 RFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       306 k~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.+       |+.||||+.++.
T Consensus        95 ~~~-------~~~vavK~~~~~  109 (377)
T 3byv_A           95 QET-------GESFEVHVPYFT  109 (377)
T ss_dssp             -CC-------CCEEEEEEEEEC
T ss_pred             CCC-------CcEEEEEEEeec
Confidence            652       699999998754

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=98.26  E-value=7.2e-07  Score=92.25  Aligned_cols=126  Identities=10%  Similarity=0.041  Sum_probs=81.0

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccc--hHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHH
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGES--IRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVF  367 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~--i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~  367 (455)
                      .+||+|.-|.||+|+..+        |++|||||.+++....  +..+          .+++...   .-.....     
T Consensus       101 ~~IG~Gk~a~VY~a~d~~--------G~~vAvKi~r~~~~sfr~v~~~----------r~~~~~~---~~~~~~~-----  154 (397)
T 4gyi_A          101 SRIGVGKESDIMIVADEK--------GKQKVLKIHRLGRISFRTVKAN----------RDYLRNR---STGSWMY-----  154 (397)
T ss_dssp             EEEEECSSEEEEEEECTT--------CCEEEEEEECTTEECCCCCC------------CEECTTS---CHHHHHH-----
T ss_pred             CEeeeCCceEEEEEECCC--------CCEEEEEEEecccccHHHHHHH----------HHHHHhh---ccccHHH-----
Confidence            689999999999998754        6999999999886431  1110          0111111   1111111     


Q ss_pred             HHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccchhHHhhhchhhHHHHHHHHHHHHHHh
Q 012848          368 MMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKM  447 (455)
Q Consensus       368 l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~l~~~~~~~~~LA~~g~~aflkm  447 (455)
                       ...+--..|.+|+.++...     .+.+|+|+  .+.+.+|||||++|.++.++.+.     .....+...++.+. ..
T Consensus       155 -~~rl~A~kE~~nL~rL~~~-----gv~vp~p~--~~~~~~LVME~i~G~~L~~l~~~-----~~~~~l~~qll~~l-~~  220 (397)
T 4gyi_A          155 -LSRLAAIKEFAFMKALYEE-----GFPVPEPI--AQSRHTIVMSLVDALPMRQVSSV-----PDPASLYADLIALI-LR  220 (397)
T ss_dssp             -HHHHHHHHHHHHHHHHHHT-----TCSCCCEE--EEETTEEEEECCSCEEGGGCCCC-----SCHHHHHHHHHHHH-HH
T ss_pred             -HHHHHHHHHHHHHHHHHhc-----CCCCCeee--eccCceEEEEecCCccHhhhccc-----HHHHHHHHHHHHHH-HH
Confidence             1112235788999988653     57789988  57788999999999998876422     12345666666654 44


Q ss_pred             hhccCCCC
Q 012848          448 LLVPYLNN  455 (455)
Q Consensus       448 lf~dgFv~  455 (455)
                      +...|+||
T Consensus       221 lH~~gIVH  228 (397)
T 4gyi_A          221 LAKHGLIH  228 (397)
T ss_dssp             HHHTTEEC
T ss_pred             HHHCCCcC
Confidence            56788887

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=98.07  E-value=1.1e-05  Score=76.89  Aligned_cols=136  Identities=17%  Similarity=0.045  Sum_probs=78.3

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeE--EEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHH
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIV--VAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVF  367 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~--VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~  367 (455)
                      ++||+|+.|+||+|+...       +|++  |||||.+++....-.        ......--|.+.+..       ....
T Consensus        53 ~~ig~G~~g~Vy~a~~~~-------~g~~~~vAvK~~~~~~~~~~~--------~~~~~~~~~~~~~~~-------~~~~  110 (258)
T 1zth_A           53 GVISTGKEANVFYADGVF-------DGKPVAMAVKIYRIETSEFDK--------MDEYLYGDERFDMRR-------ISPK  110 (258)
T ss_dssp             EEEEECSSEEEEEEEEEE-------TTEEEEEEEEEECCC---------------GGGTTTCTTSCC-----------CH
T ss_pred             CEEeecceEEEEEEEEcC-------CCcEeeEEEEEEECCccchhh--------HHHhhcccchhhhhc-------cChH
Confidence            789999999999999843       1688  999999887421111        000011122233321       0111


Q ss_pred             HHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeeccc--CccccchhHHhhh-chhhHHHHHHHHHHHH
Q 012848          368 MMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQ--GECVSRYVDELQG-HERLKSALAHIGTHAL  444 (455)
Q Consensus       368 l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~--G~~i~~~~~~l~~-~~~~~~~LA~~g~~af  444 (455)
                      -..+..+.+|++++.++...     .+.+|.++.  +...+|||||+.  |.+...+.+.... .......++..+++++
T Consensus       111 ~~~~~~~~~E~~~l~~l~~~-----~i~~p~~~~--~~~~~lVmE~~g~~g~~~~~L~~~~~~~~~~~~~~i~~qi~~~l  183 (258)
T 1zth_A          111 EKVFIWTEKEFRNLERAKEA-----GVSVPQPYT--YMKNVLLMEFIGEDELPAPTLVELGRELKELDVEGIFNDVVENV  183 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT-----TCCCCCEEE--EETTEEEEECCEETTEECCBHHHHGGGGGGSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhC-----CCCCCeEEE--cCCCEEEEEecCCCCCccccHHHHhhccChHHHHHHHHHHHHHH
Confidence            12344678899999988753     467888884  578899999994  4333332221111 1123456666666655


Q ss_pred             HHhhh-ccCCCC
Q 012848          445 LKMLL-VPYLNN  455 (455)
Q Consensus       445 lkmlf-~dgFv~  455 (455)
                      -. |. ..|++|
T Consensus       184 ~~-lH~~~givH  194 (258)
T 1zth_A          184 KR-LYQEAELVH  194 (258)
T ss_dssp             HH-HHHTSCEEC
T ss_pred             HH-HHHHCCEEe
Confidence            44 44 777777

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=98.03  E-value=9.3e-06  Score=79.49  Aligned_cols=150  Identities=16%  Similarity=0.200  Sum_probs=66.9

Q ss_pred             hcCCCCCCHHHHHHHHHHHhCCChHhhcccccc----------ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          257 HSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEE----------APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       257 qD~vpp~~~~~v~~vle~elG~~~~eiF~~fd~----------~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      ||+.+.-+.......++...|.++.+.+..|++          +.||.|+.|+||+|+.+..  + ...+..||||+.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lG~G~~g~Vy~~~~~~~--~-~~~~~~vavK~~~~   83 (333)
T 1mqb_A            7 HHHHDYDIPTTENLYFQGAMGSDPNQAVLKFTTEIHPSCVTRQKVIGAGEFGEVYKGMLKTS--S-GKKEVPVAIKTLKA   83 (333)
T ss_dssp             -------------------------------CCBCCTTTEEEEEEEEECSSSEEEEEEEEC------CCEEEEEEEEECT
T ss_pred             ccccccCCCCCccccccccccCChhhhhhhccccCChHHhhcccEEecCCCeEEEEEEEecC--C-CCccccEEEEEcCC
Confidence            567777788888999999999999888888876          8999999999999998752  1 12346799999887


Q ss_pred             CcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccC--CCC
Q 012848          327 GVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY--PLV  404 (455)
Q Consensus       327 gV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~--~ls  404 (455)
                      +..+..                                      +.++.+|++.+.++.     .+.  |++++.  +-.
T Consensus        84 ~~~~~~--------------------------------------~~~~~~E~~~l~~l~-----h~~--iv~~~~~~~~~  118 (333)
T 1mqb_A           84 GYTEKQ--------------------------------------RVDFLGEAGIMGQFS-----HHN--IIRLEGVISKY  118 (333)
T ss_dssp             TCCHHH--------------------------------------HHHHHHHHHHHHTCC-----CTT--BCCEEEEECSS
T ss_pred             CCCHHH--------------------------------------HHHHHHHHHHHHhCC-----CCC--CCcEEEEEecC
Confidence            642111                                      012344555554331     222  223221  223


Q ss_pred             CCCeEEeecccCccccchhHHhhh--chhhHHHHHHHHHHHHHHhhhccCCCC
Q 012848          405 HPAVLVETYEQGECVSRYVDELQG--HERLKSALAHIGTHALLKMLLVPYLNN  455 (455)
Q Consensus       405 t~rVLVmE~i~G~~i~~~~~~l~~--~~~~~~~LA~~g~~aflkmlf~dgFv~  455 (455)
                      ..-.|||||++|..+.+++.....  .......++..++++ +..|-..|++|
T Consensus       119 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~a-L~~LH~~~ivH  170 (333)
T 1mqb_A          119 KPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAG-MKYLANMNYVH  170 (333)
T ss_dssp             SSEEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHH-HHHHHHTTCCC
T ss_pred             CCcEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHH-HHHHHhCCeeC
Confidence            455899999999999887654211  111122333333332 34445567766

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=97.35  E-value=0.00012  Score=69.98  Aligned_cols=119  Identities=11%  Similarity=0.048  Sum_probs=51.8

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc----ccchHhHHHHHHHHHHHHccccCccc-c------CH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV----GESIRRDFVIINLAAKISSVIPAVKW-L------RL  357 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV----~~~i~~DL~il~~la~l~~~~P~l~~-l------~l  357 (455)
                      .++||.|+.|+||+|+.+.+       |+.||||+.+..-    .+.+..++.+|+.+-     .|.+-. +      +-
T Consensus        11 ~~~lG~G~~g~V~~a~~~~~-------~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----hpniv~~~~~~~~~~~   78 (332)
T 3qd2_B           11 IQCMGRGGFGVVFEAKNKVD-------DCNYAIKRIRLPNRELAREKVMREVKALAKLE-----HPGIVRYFNAWLETPP   78 (332)
T ss_dssp             EEEEECC-CSEEEEEEETTT-------CCEEEEEEEECCSTTTHHHHHHHHHHHHTSCC-----CTTBCCEEEEEEECCS
T ss_pred             eeEecCCCCeEEEEEEEcCC-------CcEEEEEEeecCCchhHHHHHHHHHHHHHhCC-----CCCEeeEEEEEEEecc
Confidence            47899999999999998752       6999999987433    233444444443321     232210 0      11


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCC--------------CeEEeecccCccccchh
Q 012848          358 DESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHP--------------AVLVETYEQGECVSRYV  423 (455)
Q Consensus       358 ~e~v~ef~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~--------------rVLVmE~i~G~~i~~~~  423 (455)
                      ....++     ..++.+..|..+...........+.+.++.... +.+.              -.+||||++|..+.+++
T Consensus        79 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~  152 (332)
T 3qd2_B           79 EKWQEE-----MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDP-FSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWM  152 (332)
T ss_dssp             CHHHHH-----HHC---------------------------------------------CCCEEEEEEECCCSSCHHHHH
T ss_pred             chhhhh-----hhhhhhccccccccccCCCcccccccceeeccc-cCcccccccccCCCCCceEEEEEEecCCCCHHHHH
Confidence            112222     234455555544333322222223333333221 1111              47999999999998876


Q ss_pred             HH
Q 012848          424 DE  425 (455)
Q Consensus       424 ~~  425 (455)
                      ..
T Consensus       153 ~~  154 (332)
T 3qd2_B          153 NR  154 (332)
T ss_dssp             HT
T ss_pred             hc
Confidence            54

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=97.18  E-value=0.00035  Score=66.69  Aligned_cols=63  Identities=24%  Similarity=0.245  Sum_probs=24.3

Q ss_pred             HHhhhcCCCCCCHHHHHHHHHHHhCCChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          253 LSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       253 L~~LqD~vpp~~~~~v~~vle~elG~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      |+.+|++.||  ...+++.-++.++....+.|+-  .+.||.|+-|.||+|+.+.+       |+.||||+.+.
T Consensus         2 l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~y~~--~~~lg~G~~g~Vy~~~~~~~-------~~~vaiK~~~~   64 (314)
T 3com_A            2 LETVQLRNPP--RRQLKKLDEDSLTKQPEEVFDV--LEKLGEGSYGSVYKAIHKET-------GQIVAIKQVPV   64 (314)
T ss_dssp             ------------------------------CEEE--EEECC----CEEEEEEETTT-------CCEEEEEEEET
T ss_pred             ccccccCCCC--ccchhhcCchhhhhcchhhhhh--heeeccCCCeEEEEEEECCC-------CCEEEEEecCc
Confidence            5678888887  4567788888888777776653  35799999999999998752       69999998764

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=97.13  E-value=0.0004  Score=67.28  Aligned_cols=121  Identities=8%  Similarity=-0.009  Sum_probs=70.9

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHH
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMM  369 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~  369 (455)
                      ++||+|+-|+||+|+..+        |+.||||+.+++-... ..+-.....       + ...|+            -.
T Consensus        96 ~~iG~G~~g~Vy~~~~~~--------g~~valK~~~~~~~~~-~~~~~~~~~-------~-~~~w~------------~~  146 (282)
T 1zar_A           96 KLMGEGKESAVFNCYSEK--------FGECVVKFHKVGHTSF-KKVKEKRDY-------G-DLHFS------------VL  146 (282)
T ss_dssp             EEEEECSSEEEEEEEETT--------TEEEEEEEECC-------CCCC---------------CHH------------HH
T ss_pred             CEeccCCCceEEEEEeCC--------CCEEEEEEEECCCCch-hhhhhhhhh-------c-chhhH------------HH
Confidence            789999999999999832        6999999998763210 000000000       0 01111            11


Q ss_pred             HhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccchhHHhhhchhhHHHHHHHHHHHHHHhhh
Q 012848          370 SQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLL  449 (455)
Q Consensus       370 ~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~l~~~~~~~~~LA~~g~~aflkmlf  449 (455)
                      ...++.+|.+.+.++.      . +.+|.++.  .....+||||++|.++.++ ..   .  ....++..++++. ..+-
T Consensus       147 ~~~~~~~E~~~l~~l~------~-~~v~~~~~--~~~~~lvmE~~~g~~L~~l-~~---~--~~~~i~~qi~~~l-~~lH  210 (282)
T 1zar_A          147 AIRSARNEFRALQKLQ------G-LAVPKVYA--WEGNAVLMELIDAKELYRV-RV---E--NPDEVLDMILEEV-AKFY  210 (282)
T ss_dssp             HHHHHHHHHHHHHHTT------T-SSSCCEEE--EETTEEEEECCCCEEGGGC-CC---S--CHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHhcc------C-CCcCeEEe--ccceEEEEEecCCCcHHHc-ch---h--hHHHHHHHHHHHH-HHHH
Confidence            2345678888888776      2 56777663  3566999999999998873 21   1  1234555555543 3334


Q ss_pred             ccCCCC
Q 012848          450 VPYLNN  455 (455)
Q Consensus       450 ~dgFv~  455 (455)
                      ..|++|
T Consensus       211 ~~giiH  216 (282)
T 1zar_A          211 HRGIVH  216 (282)
T ss_dssp             HTTEEC
T ss_pred             HCCCEe
Confidence            666666

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=97.00  E-value=0.0017  Score=59.70  Aligned_cols=92  Identities=23%  Similarity=0.105  Sum_probs=64.4

Q ss_pred             HHhCCChHhhcccccccccc-ccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCc
Q 012848          274 RAFGRRLSEIFDGFEEAPVA-SGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAV  352 (455)
Q Consensus       274 ~elG~~~~eiF~~fd~~PiA-SASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l  352 (455)
                      .++...+.+.+..++-+|++ .|+.++||+....+        |+.++||+.+++..                       
T Consensus         9 ~~~p~~l~~~~~~~~~~~~~~gg~~~~v~~~~~~~--------g~~~vlK~~~~~~~-----------------------   57 (264)
T 1nd4_A            9 AGSPAAWVERLFGYDWAQQTIGCSDAAVFRLSAQG--------RPVLFVKTDLSGAL-----------------------   57 (264)
T ss_dssp             -CCCGGGTTTTTTCEEEECSCTTSSCEEEEEECTT--------SCCEEEEEECSCTT-----------------------
T ss_pred             ccCCHHHHHhcCCCceEecccCCCCceEEEEecCC--------CCeEEEEeCCcccc-----------------------
Confidence            44445566666677778886 77889999997643        57899999765310                       


Q ss_pred             cccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCC--CCeEEeecccCcccc
Q 012848          353 KWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVH--PAVLVETYEQGECVS  420 (455)
Q Consensus       353 ~~l~l~e~v~ef~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst--~rVLVmE~i~G~~i~  420 (455)
                                         -++..|++.++.+.+.     .+.+|+++.-...  ..+++|||++|.+++
T Consensus        58 -------------------~~~~~E~~~l~~l~~~-----~~~vP~~~~~~~~~~~~~~v~e~i~G~~l~  103 (264)
T 1nd4_A           58 -------------------NELQDEAARLSWLATT-----GVPCAAVLDVVTEAGRDWLLLGEVPGQDLL  103 (264)
T ss_dssp             -------------------SCHHHHHHHHHHHHTT-----TCCBCCEEEEEECSSCEEEEEECCSSEETT
T ss_pred             -------------------hhhhHHHHHHHHHHhC-----CCCCCeEEEeccCCCCCEEEEEecCCcccC
Confidence                               1456788777766532     5778988753322  349999999999985

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=96.99  E-value=0.0017  Score=62.39  Aligned_cols=33  Identities=15%  Similarity=-0.150  Sum_probs=28.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.||.|+-|+||+|+....       |+.||||+.+++.
T Consensus        36 ~~~lg~G~~g~Vy~a~~~~~-------~~~vavK~~~~~~   68 (286)
T 3uqc_A           36 LIFHGGVPPLQFWQALDTAL-------DRQVALTFVDPQG   68 (286)
T ss_dssp             EEEEEBSTTCEEEEEEETTT-------TEEEEEEESCTTC
T ss_pred             EEEEcccCCeEEEEEEecCC-------CceEEEEEECccc
Confidence            37899999999999998652       6999999998864

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=96.68  E-value=0.0068  Score=59.56  Aligned_cols=89  Identities=20%  Similarity=0.263  Sum_probs=52.2

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHH
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMM  369 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~  369 (455)
                      +.||.|+-|+||+|++++.  ....+|+.||||+.+..-                             .+..+       
T Consensus        19 ~~lG~G~fG~Vy~a~~~~~--~~~~~~~~vAvK~l~~~~-----------------------------~~~~~-------   60 (299)
T 4asz_A           19 RELGEGAFGKVFLAECYNL--CPEQDKILVAVKTLKDAS-----------------------------DNARK-------   60 (299)
T ss_dssp             EEEEC--CCCEEEEEECSC--C----CEEEEEEEECSCC-----------------------------HHHHH-------
T ss_pred             eEEeeCCCcEEEEEEECCc--ccCCCCEEEEEEEeCCCC-----------------------------hHHHH-------
Confidence            6799999999999998641  112347999999876431                             00011       


Q ss_pred             HhcCHHHHHHHHHHHHHHhCCCCCe-EeCcccCCCCCCCeEEeecccCccccchhHH
Q 012848          370 SQVDLAREAAHLSRFIYNFRRWKDV-SFPKPVYPLVHPAVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       370 ~ELDfr~EA~nl~rf~~~f~~~~~V-~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~  425 (455)
                         +|.+|++-+.++.     +++| .+=.+. .-..+-.|||||++|-.+.+++..
T Consensus        61 ---~f~~E~~il~~l~-----HpnIV~l~g~~-~~~~~~~lV~Ey~~~G~L~~~l~~  108 (299)
T 4asz_A           61 ---DFHREAELLTNLQ-----HEHIVKFYGVC-VEGDPLIMVFEYMKHGDLNKFLRA  108 (299)
T ss_dssp             ---HHHHHHHHHTTCC-----CTTBCCEEEEE-CSSSSEEEEEECCTTCBHHHHHHH
T ss_pred             ---HHHHHHHHHHhCC-----CCCCccEEEEE-eeCCEEEEEEEcCCCCcHHHHHHh
Confidence               2466777666542     3332 221111 112345799999999999988754

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=96.58  E-value=0.0016  Score=65.19  Aligned_cols=40  Identities=15%  Similarity=0.255  Sum_probs=26.3

Q ss_pred             hHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          280 LSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       280 ~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      +.+.|.-...+.||.|+.|+||+|+.+.+       |+.||||+.++
T Consensus        85 ~~~~~~~~~~~~lG~G~~g~Vy~a~~~~~-------g~~vavK~~~~  124 (373)
T 2x4f_A           85 VNSFYTVSKTEILGGGRFGQVHKCEETAT-------GLKLAAKIIKT  124 (373)
T ss_dssp             GGGTEEEEEEEECC-----CEEEEEETTT-------CCEEEEEEEEC
T ss_pred             cccceeeecceEEecCcCEEEEEEEEcCC-------CcEEEEEEEcc
Confidence            44445444568999999999999998752       69999999764

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=96.58  E-value=0.0023  Score=67.74  Aligned_cols=94  Identities=20%  Similarity=0.163  Sum_probs=55.1

Q ss_pred             ccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHH
Q 012848          286 GFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFA  365 (455)
Q Consensus       286 ~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~  365 (455)
                      .+..+.||.|+-|+||+|+..         |++|++|+..+.....-..|                       +   +. 
T Consensus       338 ~~~~~~LG~G~fg~Vy~~~~~---------~~~~~~k~~~~~~~~~~~~~-----------------------~---~~-  381 (540)
T 3en9_A          338 KIPEHLIGKGAEADIKRDSYL---------DFDVIIKERVKKGYRDERLD-----------------------E---NI-  381 (540)
T ss_dssp             ----------CCEEEEEEECS---------SCEEEEEEECCCTTSCHHHH-----------------------H---HH-
T ss_pred             CCCCCEEeeCCCEEEEEEEEC---------CCeEEEEEEecccccchhhh-----------------------h---HH-
Confidence            355789999999999999653         58999998876321110000                       0   00 


Q ss_pred             HHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccchhH
Q 012848          366 VFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVD  424 (455)
Q Consensus       366 ~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~  424 (455)
                          ..-.+.+|++.+.++.     ++++..|..+........|||||++|.++.+++.
T Consensus       382 ----~~~~~~~E~~il~~l~-----h~nIv~~~~~~~~~~~~~lVmE~~~ggsL~~~l~  431 (540)
T 3en9_A          382 ----RKSRTAREARYLALVK-----DFGIPAPYIFDVDLDNKRIMMSYINGKLAKDVIE  431 (540)
T ss_dssp             ----HHHHHHHHHHHHHHGG-----GGTCCCCCEEEEETTTTEEEEECCCSEEHHHHST
T ss_pred             ----HHHHHHHHHHHHHhcC-----CCCcCceEEEEEeCCccEEEEECCCCCCHHHHHH
Confidence                0113477887777763     3566666666555667799999999999887754

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=96.48  E-value=0.003  Score=61.83  Aligned_cols=29  Identities=28%  Similarity=0.388  Sum_probs=24.8

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|.||+|+++         |+.||||+.++
T Consensus         8 ~~~iG~G~fG~Vy~~~~~---------g~~VAvK~l~~   36 (303)
T 3hmm_A            8 QESIGKGRFGEVWRGKWR---------GEEVAVKIFSS   36 (303)
T ss_dssp             EEEEEECSSSEEEEEEET---------TEEEEEEEECG
T ss_pred             EEEEeeCCCeEEEEEEEC---------CEEEEEEEECc
Confidence            467999999999999984         59999998753

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=96.48  E-value=0.0037  Score=63.15  Aligned_cols=37  Identities=30%  Similarity=0.299  Sum_probs=29.2

Q ss_pred             hHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          280 LSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       280 ~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      +.+.|+.++  .||.|+-|.||+|+-+.+       |+.||||+..
T Consensus        72 p~~~y~~~~--~iG~G~fG~V~~a~~~~t-------g~~vAiK~i~  108 (346)
T 4fih_A           72 PRSYLDNFI--KIGEGSTGIVCIATVRSS-------GKLVAVKKMD  108 (346)
T ss_dssp             GGGTEEEEE--EEEECSSCEEEEEEETTT-------CCEEEEEEEE
T ss_pred             hhHhcEEeE--EeecCcCeEEEEEEECCC-------CCEEEEEEEe
Confidence            345565554  599999999999998762       6999999874

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=96.46  E-value=0.0048  Score=61.54  Aligned_cols=69  Identities=25%  Similarity=0.403  Sum_probs=33.1

Q ss_pred             HHhhhcCCCCCCHHHHHHHHHHHhCCChHhhccccc-cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          253 LSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFE-EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       253 L~~LqD~vpp~~~~~v~~vle~elG~~~~eiF~~fd-~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      +..++..+.|+.++.-.+.+. ++...++  ...|+ .+.||.|+-|+||+|+.+..  +  .+|+.||||+.+++.
T Consensus        16 ~~~~~~~~~p~~~~~~~~~~~-~~~~~~~--~~~~~~~~~lG~G~fg~Vy~~~~~~~--~--~~~~~vaiK~~~~~~   85 (373)
T 2qol_A           16 LPGLRTFVDPHTFEDPTQTVH-EFAKELD--ATNISIDKVVGAGEFGEVCSGRLKLP--S--KKEISVAIKTLKVGY   85 (373)
T ss_dssp             -----CCC-----------CT-TTSCBCC--GGGCCCCEEEEECSSSEEEEC-CBCT--T--SCBCCEEEEECCTTC
T ss_pred             ccccccccCccccCCHHHHHH-HHHhhcC--HhhceeeeEEeeCCCeEEEEEEEecC--C--CCceeEEEEEecCcc
Confidence            445666677776665444332 2222221  11233 57899999999999998731  1  136889999988764

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=96.35  E-value=0.0062  Score=58.24  Aligned_cols=97  Identities=14%  Similarity=0.021  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHhCCChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHH
Q 012848          266 AYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKI  345 (455)
Q Consensus       266 ~~v~~vle~elG~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l  345 (455)
                      +.+.+.+.+.+|.++..      -++++.|..++|||-++.+        |++|+||+..++-...              
T Consensus         3 ~~v~a~~~~l~G~~v~~------v~~~g~G~~~~vyrv~l~D--------G~~~~vK~~~~~~~~~--------------   54 (288)
T 3f7w_A            3 NSVAARVTELTGREVAA------VAERGHSHRWHLYRVELAD--------GTPLFVKALPDDAPAL--------------   54 (288)
T ss_dssp             HHHHHHHHHHHCCCEEE------EEEEEEETTEEEEEEEETT--------SCEEEEEECCTTCCCC--------------
T ss_pred             HHHHHHHHHhcCCCeEE------EEecCCCCCeEEEEEEECC--------CCEEEEEEeCCCCcch--------------
Confidence            46778888999987643      4789999999999999975        6999999877653210              


Q ss_pred             HccccCccccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccc
Q 012848          346 SSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSR  421 (455)
Q Consensus       346 ~~~~P~l~~l~l~e~v~ef~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~  421 (455)
                                  .+             .|+.|++.++...    ....|.+|+++  ...+..++|||++|...+.
T Consensus        55 ------------~~-------------~~~~Ea~~L~~L~----~~~~vpvP~v~--~~~~~~lv~e~l~~~~~~~   99 (288)
T 3f7w_A           55 ------------DG-------------LFRAEALGLDWLG----RSFGSPVPQVA--GWDDRTLAMEWVDERPPTP   99 (288)
T ss_dssp             ------------TT-------------HHHHHHHHHHHHT----CSTTCCSCCEE--EEETTEEEEECCCCCCCCH
T ss_pred             ------------hh-------------HHHHHHHHHHHHH----hhCCCCcceEE--eccCceEEEEeecccCCCh
Confidence                        00             1367887777554    33468899998  4678899999999987653

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=96.34  E-value=0.0057  Score=60.36  Aligned_cols=89  Identities=13%  Similarity=0.145  Sum_probs=52.3

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHH
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMM  369 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~  369 (455)
                      +-||.|+-|.||+|+++..  +....|+.||||+.++......                            .+       
T Consensus        32 ~~lG~G~fG~Vykg~~~~~--~~~~~~~~VAvK~l~~~~~~~~----------------------------~~-------   74 (308)
T 4gt4_A           32 EELGEDRFGKVYKGHLFGP--APGEQTQAVAIKTLKDKAEGPL----------------------------RE-------   74 (308)
T ss_dssp             EEEEECSSCEEEEEEEC---------CEEEEEEECCC-CCC-C----------------------------HH-------
T ss_pred             eEeccCCCcEEEEEEEcCC--ccCCCCeEEEEEEECcccChHH----------------------------HH-------
Confidence            4599999999999998632  1123478999999875432110                            11       


Q ss_pred             HhcCHHHHHHHHHHHHHHhCCCCCe-EeCcccCCCCCCCeEEeecccCccccchhH
Q 012848          370 SQVDLAREAAHLSRFIYNFRRWKDV-SFPKPVYPLVHPAVLVETYEQGECVSRYVD  424 (455)
Q Consensus       370 ~ELDfr~EA~nl~rf~~~f~~~~~V-~vP~~~~~lst~rVLVmE~i~G~~i~~~~~  424 (455)
                         +|.+|+.-+.++.     +++| .+=.+. .-..+-.|||||++|-.+.+++.
T Consensus        75 ---~f~~E~~il~~l~-----HpNIV~l~g~~-~~~~~~~lV~Ey~~~G~L~~~L~  121 (308)
T 4gt4_A           75 ---EFRHEAMLRARLQ-----HPNVVCLLGVV-TKDQPLSMIFSYCSHGDLHEFLV  121 (308)
T ss_dssp             ---HHHHHHHHHHHCC-----CTTBCCEEEEE-CSSSSCEEEEECCSSCBHHHHHH
T ss_pred             ---HHHHHHHHHHhCC-----CCCCCCcceEE-EECCEEEEEEEcCCCCcHHHHHH
Confidence               2466776666542     3332 111111 11234579999999999988764

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=96.30  E-value=0.0065  Score=59.15  Aligned_cols=34  Identities=18%  Similarity=0.296  Sum_probs=28.2

Q ss_pred             cccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          287 FEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       287 fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +..++||.|+-|.||+|+.+.+       |+.||||+..+.
T Consensus        14 ~~~~~lG~G~~g~V~~~~~~~~-------~~~vavK~~~~~   47 (325)
T 3kn6_A           14 LKDKPLGEGSFSICRKCVHKKS-------NQAFAVKIISKR   47 (325)
T ss_dssp             TTSCCSEEETTEEEEEEEETTT-------CCEEEEEEEEGG
T ss_pred             cCCCccccCCCeEEEEEEECCC-------CCEEEEEEEChh
Confidence            3468999999999999998752       699999997543

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=96.26  E-value=0.0075  Score=57.17  Aligned_cols=33  Identities=21%  Similarity=0.089  Sum_probs=25.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.||.|+.|+||+|+.+.+       |+.||||+.++.-
T Consensus        18 ~~~lG~G~~g~Vy~a~~~~~-------~~~vavK~~~~~~   50 (298)
T 2zv2_A           18 KDEIGKGSYGVVKLAYNEND-------NTYYAMKVLSKKK   50 (298)
T ss_dssp             EEEEEC--CCEEEEEEETTT-------TEEEEEEEEECC-
T ss_pred             EeEEeecCCEEEEEEEECCC-------CcEEEEEEeehhh
Confidence            47899999999999998652       6999999998763

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=96.26  E-value=0.0085  Score=56.11  Aligned_cols=111  Identities=15%  Similarity=0.207  Sum_probs=61.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|+-|.||+|+.++        ++.||||+.+++-...                          .          
T Consensus        29 ~~~lg~G~~g~V~~~~~~~--------~~~vavK~~~~~~~~~--------------------------~----------   64 (283)
T 3gen_A           29 LKELGTGQFGVVKYGKWRG--------QYDVAIKMIKEGSMSE--------------------------D----------   64 (283)
T ss_dssp             EEECC---CEEEEEEEETT--------TEEEEEEEECTTSBCH--------------------------H----------
T ss_pred             HhhcCCCCCceEEEEEEcC--------CCeEEEEEecCCCCCH--------------------------H----------
Confidence            4789999999999998864        5899999988653210                          0          


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccC--CCCCCCeEEeecccCccccchhHHhhh--chhhHHHHHHHHHHHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY--PLVHPAVLVETYEQGECVSRYVDELQG--HERLKSALAHIGTHAL  444 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~--~lst~rVLVmE~i~G~~i~~~~~~l~~--~~~~~~~LA~~g~~af  444 (455)
                          ++.+|++.+.++.     .++  |++.+.  .-...-.+||||++|..+.+++.....  .......++..++++ 
T Consensus        65 ----~~~~E~~~l~~l~-----h~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~-  132 (283)
T 3gen_A           65 ----EFIEEAKVMMNLS-----HEK--LVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEA-  132 (283)
T ss_dssp             ----HHHHHHHHHHTCC-----CTT--BCCEEEEECSSSSEEEEECCCTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHH-
T ss_pred             ----HHHHHHHHHhcCC-----CCC--EeeEEEEEecCCCeEEEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHH-
Confidence                1234554444332     222  333332  122344799999999999887644211  111123344444443 


Q ss_pred             HHhhhccCCCC
Q 012848          445 LKMLLVPYLNN  455 (455)
Q Consensus       445 lkmlf~dgFv~  455 (455)
                      +..|-..|++|
T Consensus       133 l~~lH~~~i~H  143 (283)
T 3gen_A          133 MEYLESKQFLH  143 (283)
T ss_dssp             HHHHHHTTCCC
T ss_pred             HHHHHHCCccC
Confidence            34444566666

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=96.23  E-value=0.014  Score=55.40  Aligned_cols=57  Identities=19%  Similarity=0.136  Sum_probs=36.3

Q ss_pred             cCCCCCCHHHHHHHHHHHhCCChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          258 SKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       258 D~vpp~~~~~v~~vle~elG~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      ...+.+++.++.++..     .+++--.....+.||.|+-|.||+|+..         |+.||||+.++..
T Consensus        10 ~~~~~~~~~~l~~~~~-----~f~~~~~~~~~~~lg~G~~g~Vy~~~~~---------~~~vavK~~~~~~   66 (307)
T 2nru_A           10 TRFHSFSFYELKNVTN-----NFDERPISVGGNKMGEGGFGVVYKGYVN---------NTTVAVKKLAAMV   66 (307)
T ss_dssp             -CCEECCHHHHHHHTT-----TTCCSBTTTTCCEEEECSSEEEEEEESS---------SCEEEEEEECCCT
T ss_pred             CCCCcccHHHHHHHHc-----ccccccccccCCccccCCCeEEEEEEEC---------CceEEEEEEeccc
Confidence            3455566666554421     1111111233478999999999999863         5899999987654

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=96.21  E-value=0.015  Score=56.22  Aligned_cols=47  Identities=17%  Similarity=0.150  Sum_probs=35.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcc-----------cchHhHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVG-----------ESIRRDFVIINLAAK  344 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~-----------~~i~~DL~il~~la~  344 (455)
                      .+.||.|+-|+||+|+..         |+.||||+.++...           +.+...+.+++.+..
T Consensus        25 ~~~lG~G~~g~V~~~~~~---------~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~   82 (336)
T 2vuw_A           25 CEKIGEGVFGEVFQTIAD---------HTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSL   82 (336)
T ss_dssp             CEEEEEETTEEEEEEEET---------TEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHH
T ss_pred             eeeecccCceEEEEEEeC---------CceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHH
Confidence            468999999999999862         59999999987643           445566666665543

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=96.15  E-value=0.0096  Score=58.94  Aligned_cols=81  Identities=19%  Similarity=0.174  Sum_probs=51.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|+.|.||+|+++          .+||||+.+..-.                          + .+..+      
T Consensus        41 ~~~iG~G~fG~Vy~~~~~----------~~vAvK~~~~~~~--------------------------~-~~~~~------   77 (307)
T 3omv_A           41 STRIGSGSFGTVYKGKWH----------GDVAVKILKVVDP--------------------------T-PEQFQ------   77 (307)
T ss_dssp             EEECCCCSSSEEEEEESS----------SEEEEEECCCSSC--------------------------C-HHHHH------
T ss_pred             eeEEeeCCCcEEEEEEEC----------CcEEEEEEEecCC--------------------------C-HHHHH------
Confidence            467999999999999985          3699999753210                          0 11111      


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCC--CCCeEEeecccCccccchhH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLV--HPAVLVETYEQGECVSRYVD  424 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~ls--t~rVLVmE~i~G~~i~~~~~  424 (455)
                          +|.+|++-+.++.     +++|.  +. .++|  ..-.|||||++|-.+.+++.
T Consensus        78 ----~f~~E~~il~~l~-----HpNIV--~l-~g~~~~~~~~iVmEy~~gGsL~~~l~  123 (307)
T 3omv_A           78 ----AFRNEVAVLRKTR-----HVNIL--LF-MGYMTKDNLAIVTQWCEGSSLYKHLH  123 (307)
T ss_dssp             ----HHHHHHHHHTTCC-----CTTBC--CE-EEEECSSSCEEEEECCSSCBHHHHHH
T ss_pred             ----HHHHHHHHHHhCC-----CCCEe--eE-EEEEECCeEEEEEEcCCCCCHHHHHh
Confidence                2567777666542     33321  11 2233  23469999999999988764

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=96.14  E-value=0.017  Score=53.79  Aligned_cols=82  Identities=21%  Similarity=0.235  Sum_probs=53.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|+-|.||+|+..+        +++||||+.+++....                          .          
T Consensus        15 ~~~lg~G~~g~V~~~~~~~--------~~~vavK~~~~~~~~~--------------------------~----------   50 (269)
T 4hcu_A           15 VQEIGSGQFGLVHLGYWLN--------KDKVAIKTIREGAMSE--------------------------E----------   50 (269)
T ss_dssp             EEEEEECSSCEEEEEEETT--------TEEEEEEEECTTSBCH--------------------------H----------
T ss_pred             eheecCCCccEEEEEEecC--------CCeEEEEEecccccCH--------------------------H----------
Confidence            3689999999999999864        5889999987653211                          0          


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccC--CCCCCCeEEeecccCccccchhHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY--PLVHPAVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~--~lst~rVLVmE~i~G~~i~~~~~~  425 (455)
                          ++.+|++.+.++.     .+.  |++++.  .-...-.+||||++|..+.+++..
T Consensus        51 ----~~~~E~~~l~~l~-----h~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~   98 (269)
T 4hcu_A           51 ----DFIEEAEVMMKLS-----HPK--LVQLYGVCLEQAPICLVFEFMEHGCLSDYLRT   98 (269)
T ss_dssp             ----HHHHHHHHHHTCC-----CTT--BCCEEEEECSSSSEEEEEECCTTCBHHHHHHT
T ss_pred             ----HHHHHHHHHHhCC-----CCC--EeeEEEEEecCCceEEEEEeCCCCcHHHHHHh
Confidence                1344555555442     222  233332  123345799999999999887643

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=96.09  E-value=0.024  Score=54.43  Aligned_cols=90  Identities=19%  Similarity=0.159  Sum_probs=56.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|+-|.||+|+.+..  +....|+.||||+.+++....                            ..+      
T Consensus        52 ~~~lg~G~~g~Vy~~~~~~~--~~~~~~~~vavK~~~~~~~~~----------------------------~~~------   95 (343)
T 1luf_A           52 VRDIGEGAFGRVFQARAPGL--LPYEPFTMVAVKMLKEEASAD----------------------------MQA------   95 (343)
T ss_dssp             EEEEEECSSCEEEEEEEETS--STTSSEEEEEEEECCTTCCHH----------------------------HHH------
T ss_pred             eeeeeecCCeeEEEEEecCc--CCCCCceeEEEEEeccccCHH----------------------------HHH------
Confidence            46899999999999998641  111236899999987653211                            011      


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccC--CCCCCCeEEeecccCccccchhHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY--PLVHPAVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~--~lst~rVLVmE~i~G~~i~~~~~~  425 (455)
                          ++.+|++.+.++.     +++  |++.+.  .-...-.|||||++|..+.+++..
T Consensus        96 ----~~~~E~~~l~~l~-----hp~--iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~  143 (343)
T 1luf_A           96 ----DFQREAALMAEFD-----NPN--IVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRS  143 (343)
T ss_dssp             ----HHHHHHHHHHTCC-----CTT--BCCEEEEECSSSSCEEEEECCTTCBHHHHHHH
T ss_pred             ----HHHHHHHHHHhCC-----CCC--EEEEEEEEccCCceEEEEecCCCCcHHHHHHH
Confidence                2345555555441     222  222221  224556899999999999887754

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=96.08  E-value=0.0048  Score=60.62  Aligned_cols=40  Identities=18%  Similarity=0.064  Sum_probs=29.5

Q ss_pred             ChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          279 RLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       279 ~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      ..+.-|..|++ -||.|+-|.||+|+.+..       |+.||||+.+.
T Consensus        22 ~~~gr~~~~~~-~iG~G~fg~Vy~a~~~~~-------~~~vAiK~i~~   61 (290)
T 3fpq_A           22 SNDGRFLKFDI-EIGRGSFKTVYKGLDTET-------TVEVAWCELQD   61 (290)
T ss_dssp             CTTSSEEEEEE-EEEECSSEEEEEEEETTT-------CCEEEEEEEEG
T ss_pred             CCCCceEEeee-EEecCcCcEEEEEEECCC-------CeEEEEEEEch
Confidence            33333444554 499999999999998752       69999998764

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=96.07  E-value=0.014  Score=56.93  Aligned_cols=129  Identities=11%  Similarity=-0.053  Sum_probs=70.3

Q ss_pred             cccccccCcceEEEeEecccCCC-CCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPG-QKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVF  367 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G-~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~  367 (455)
                      .+.||.|+-|.||+|+.+.+... ....|+.||||+.++.  +.+..++.+++.                          
T Consensus        47 ~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~--~~~~~E~~~l~~--------------------------   98 (352)
T 2jii_A           47 KSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD--GRLFNEQNFFQR--------------------------   98 (352)
T ss_dssp             EEEEEEETTEEEEEEEECC-----------CEEEEEEETT--STHHHHHHHHHH--------------------------
T ss_pred             EEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc--chHHHHHHHHHH--------------------------
Confidence            47899999999999998752100 0013689999998765  223333333221                          


Q ss_pred             HHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCC---CCCCeEEeecccCccccchhHHhhhc---hhhHHHHHHHHH
Q 012848          368 MMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPL---VHPAVLVETYEQGECVSRYVDELQGH---ERLKSALAHIGT  441 (455)
Q Consensus       368 l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~l---st~rVLVmE~i~G~~i~~~~~~l~~~---~~~~~~LA~~g~  441 (455)
                          ++    -.|+-++...+...+...+|+++.-.   ...-.|||||+ |..+.+++......   ......++..++
T Consensus        99 ----l~----h~niv~~~~~~~~~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~  169 (352)
T 2jii_A           99 ----AA----KPLQVNKWKKLYSTPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLL  169 (352)
T ss_dssp             ----HC----CHHHHHHHHHHTTCTTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHH
T ss_pred             ----hc----ccchhhhhhhhccCCccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHH
Confidence                11    12344444455555666777765322   23458999999 99998887542111   112233444444


Q ss_pred             HHHHHhhhccCCCC
Q 012848          442 HALLKMLLVPYLNN  455 (455)
Q Consensus       442 ~aflkmlf~dgFv~  455 (455)
                      ++ +.-|-..|++|
T Consensus       170 ~~-L~~LH~~~ivH  182 (352)
T 2jii_A          170 DA-LEFLHENEYVH  182 (352)
T ss_dssp             HH-HHHHHHTTCBC
T ss_pred             HH-HHHHHhCCccC
Confidence            43 23334456665

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=96.04  E-value=0.01  Score=56.94  Aligned_cols=38  Identities=29%  Similarity=0.396  Sum_probs=29.9

Q ss_pred             hhccccc-cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          282 EIFDGFE-EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       282 eiF~~fd-~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +....|+ .+.||.|+-|.||+|+.++        |+.||||+.++.
T Consensus        36 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~--------~~~vavK~~~~~   74 (321)
T 2qkw_B           36 EATNNFDHKFLIGHGVFGKVYKGVLRD--------GAKVALKRRTPE   74 (321)
T ss_dssp             CCCCCCSCCCCSCBCSSSEEEEEECTT--------CCEEEEEECCSC
T ss_pred             HHHhccCccceeecCCCeeEEEEEECC--------CCEEEEEEeccc
Confidence            3334454 5789999999999999754        689999987775

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=96.04  E-value=0.013  Score=55.98  Aligned_cols=32  Identities=22%  Similarity=0.151  Sum_probs=26.8

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.|+.|+-|.||+|+...+       |+.||||+.++.
T Consensus        29 ~~~lg~G~~g~Vy~~~~~~~-------~~~vaiK~~~~~   60 (326)
T 2x7f_A           29 VELVGNGTYGQVYKGRHVKT-------GQLAAIKVMDVT   60 (326)
T ss_dssp             EEEEEEETTEEEEEEEETTT-------CCEEEEEEEECC
T ss_pred             EEEeccCCCEEEEEEEECCC-------CCeEEEEEEecC
Confidence            47899999999999998652       699999997643

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=96.03  E-value=0.013  Score=60.87  Aligned_cols=37  Identities=30%  Similarity=0.316  Sum_probs=29.0

Q ss_pred             hHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          280 LSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       280 ~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      +.+.|+.+  +.||.|+-|.||+|+-+.+       |+.||||+.+
T Consensus       149 p~~~y~~~--~~iG~G~fG~V~~a~~~~t-------g~~vAiK~i~  185 (423)
T 4fie_A          149 PRSYLDNF--IKIGEGSTGIVCIATVRSS-------GKLVAVKKMD  185 (423)
T ss_dssp             GGGTEEEE--EEEEECSSCEEEEEEETTT-------CCEEEEEEEE
T ss_pred             hhHhcEee--eEeccCcCcEEEEEEECCC-------CCEEEEEEEe
Confidence            34555544  4599999999999998762       6999999874

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=96.00  E-value=0.023  Score=54.30  Aligned_cols=52  Identities=10%  Similarity=-0.006  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHhCC-ChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          266 AYTKKTIERAFGR-RLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       266 ~~v~~vle~elG~-~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      +++.+.+..-... +..+-|.-  .+.||.|+-|.||+|+-+.       .|+.||||+.+.
T Consensus         3 e~~~~~l~~~~~~~~~~~~y~~--~~~lg~G~~g~V~~~~~~~-------~~~~vaiK~~~~   55 (297)
T 3fxz_A            3 EEILEKLRSIVSVGDPKKKYTR--FEKIGQGASGTVYTAMDVA-------TGQEVAIRQMNL   55 (297)
T ss_dssp             HHHHHHHHHHSBSSCGGGTBCC--CEEEEEETTEEEEEEEBTT-------TCCEEEEEEEEG
T ss_pred             HHHHhhhhcccCcCChhhceee--eeeeccCCCeEEEEEEECC-------CCcEEEEEEeec
Confidence            4444555544321 22232322  4679999999999998754       269999998754

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=95.97  E-value=0.028  Score=55.84  Aligned_cols=90  Identities=20%  Similarity=0.264  Sum_probs=53.8

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+-||.|+-|+||+|++++..  ...+|+.||||+.+..-                             .+..+      
T Consensus        46 ~~~LG~G~fG~Vy~a~~~~~~--~~~~~~~vAvK~l~~~~-----------------------------~~~~~------   88 (329)
T 4aoj_A           46 KWELGEGAFGKVFLAECHNLL--PEQDKMLVAVKALKEAS-----------------------------ESARQ------   88 (329)
T ss_dssp             EEEEEECSSEEEEEEEESSSC--C---CEEEEEEEESCCS-----------------------------HHHHH------
T ss_pred             EEEEccCCCcEEEEEEECCcc--cCCCCeEEEEEEECcCC-----------------------------HHHHH------
Confidence            356999999999999986411  12247999999976421                             00011      


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCe-EeCcccCCCCCCCeEEeecccCccccchhHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDV-SFPKPVYPLVHPAVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V-~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~  425 (455)
                          +|.+|++-+.++.     +++| .+=.+. .-..+-.|||||++|-.+.+++..
T Consensus        89 ----~f~~E~~il~~l~-----HpnIV~l~g~~-~~~~~~~lV~Ey~~~G~L~~~l~~  136 (329)
T 4aoj_A           89 ----DFQREAELLTMLQ-----HQHIVRFFGVC-TEGRPLLMVFEYMRHGDLNRFLRS  136 (329)
T ss_dssp             ----HHHHHHHHHTTCC-----CTTBCCEEEEE-CSSSSEEEEEECCTTCBHHHHHHT
T ss_pred             ----HHHHHHHHHHhCC-----CCCCCcEEEEE-EECCEEEEEEEcCCCCcHHHHHHh
Confidence                2566777666542     3332 111111 112344799999999999887643

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=95.95  E-value=0.0072  Score=59.03  Aligned_cols=33  Identities=21%  Similarity=0.240  Sum_probs=28.1

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+.+++.
T Consensus        38 ~~~lg~G~~g~V~~~~~~~~-------~~~va~K~~~~~~   70 (360)
T 3eqc_A           38 ISELGAGNGGVVFKVSHKPS-------GLVMARKLIHLEI   70 (360)
T ss_dssp             EEEEEECSSCEEEEEEETTT-------CCEEEEEEEECCC
T ss_pred             eeeecCCCCeEEEEEEECCC-------CcEEEEEEecccc
Confidence            46899999999999998752       6999999998764

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=95.86  E-value=0.051  Score=54.66  Aligned_cols=93  Identities=18%  Similarity=0.142  Sum_probs=56.8

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|+-|.||+|+.+..  ++...++.||||+.+.+...                            +..       
T Consensus        69 ~~~LG~G~fG~Vy~a~~~~~--~~~~~~k~VAvK~l~~~~~~----------------------------~~~-------  111 (353)
T 4ase_A           69 GKPLGRGAFGQVIEADAFGI--DKTATCRTVAVKMLKEGATH----------------------------SEH-------  111 (353)
T ss_dssp             EEEEEECSSEEEEEEEEETS--SSTTCEEEEEEEEECTTCCH----------------------------HHH-------
T ss_pred             eeEEecCCCeEEEEEEEcCC--CcccCCeEEEEEEEccccCh----------------------------HHH-------
Confidence            36899999999999998742  22334689999998765321                            001       


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCe-EeCcccCCCCCCCeEEeecccCccccchhHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDV-SFPKPVYPLVHPAVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V-~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~  425 (455)
                         -+|.+|++-+.++.    +.++| .+=....+-..+-.|||||++|-.+.+++..
T Consensus       112 ---~~~~~E~~il~~l~----hhpnIV~l~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~  162 (353)
T 4ase_A          112 ---RALMSELKILIHIG----HHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRS  162 (353)
T ss_dssp             ---HHHHHHHHHHHHHC----CCTTBCCEEEEECCTTSCCEEEEECCTTEEHHHHHHH
T ss_pred             ---HHHHHHHHHHHHcC----CCCcEEEEEEEEEecCCEEEEEEEcCCCCCHHHHHHh
Confidence               12456666666553    22222 1111111111223699999999999988754

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=95.86  E-value=0.022  Score=58.25  Aligned_cols=82  Identities=18%  Similarity=0.267  Sum_probs=54.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|+-|.||+|+.+.        +..||||+.+++-..                          .    +      
T Consensus       189 ~~~lG~G~fg~Vy~~~~~~--------~~~vavK~~~~~~~~--------------------------~----~------  224 (452)
T 1fmk_A          189 EVKLGQGCFGEVWMGTWNG--------TTRVAIKTLKPGTMS--------------------------P----E------  224 (452)
T ss_dssp             EEEEEECSSCEEEEEEETT--------TEEEEEEECCTTSSC--------------------------H----H------
T ss_pred             eeeecCCCCeEEEEEEECC--------CceEEEEEeccCCCC--------------------------H----H------
Confidence            4689999999999999864        478999998875311                          0    0      


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCC-eEeCcccCCCCCCCeEEeecccCccccchhHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKD-VSFPKPVYPLVHPAVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~-V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~  425 (455)
                          +|.+|++.+.++.     +++ +.+-.+..  ...-.|||||++|-++.+++..
T Consensus       225 ----~~~~E~~~l~~l~-----hp~iv~~~~~~~--~~~~~iv~e~~~~gsL~~~l~~  271 (452)
T 1fmk_A          225 ----AFLQEAQVMKKLR-----HEKLVQLYAVVS--EEPIYIVTEYMSKGSLLDFLKG  271 (452)
T ss_dssp             ----HHHHHHHHHHHCC-----CTTBCCEEEEEC--SSSCEEEECCCTTCBHHHHHSH
T ss_pred             ----HHHHHHHHHHhCC-----CCCEeeEEEEEc--CCceEEEehhhcCCCHHHHHHh
Confidence                1355666666542     222 12212221  2456799999999999887653

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=95.84  E-value=0.02  Score=53.16  Aligned_cols=82  Identities=21%  Similarity=0.250  Sum_probs=53.1

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|+-|.||+|+.++        +..||||+.+++-...                          .          
T Consensus        13 ~~~lg~G~~g~V~~~~~~~--------~~~vavK~~~~~~~~~--------------------------~----------   48 (268)
T 3sxs_A           13 LKELGSGQFGVVKLGKWKG--------QYDVAVKMIKEGSMSE--------------------------D----------   48 (268)
T ss_dssp             EEEEEEETTEEEEEEEETT--------TEEEEEEEECBTTBCH--------------------------H----------
T ss_pred             eeeeccCCCceEEEEEecC--------ceeEEEEEeccCCCcH--------------------------H----------
Confidence            4689999999999998864        5889999987642110                          0          


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccC--CCCCCCeEEeecccCccccchhHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY--PLVHPAVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~--~lst~rVLVmE~i~G~~i~~~~~~  425 (455)
                          ++.+|++.+.++.     .++  +++.+.  .-...-.+||||++|..+.+++..
T Consensus        49 ----~~~~E~~~l~~l~-----h~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~   96 (268)
T 3sxs_A           49 ----EFFQEAQTMMKLS-----HPK--LVKFYGVCSKEYPIYIVTEYISNGCLLNYLRS   96 (268)
T ss_dssp             ----HHHHHHHHHHHCC-----CTT--BCCEEEEECSSSSEEEEEECCTTCBHHHHHHH
T ss_pred             ----HHHHHHHHHHhCC-----CCC--EeeEEEEEccCCceEEEEEccCCCcHHHHHHH
Confidence                1344555555442     222  223322  223345799999999999887654

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=95.84  E-value=0.014  Score=57.88  Aligned_cols=85  Identities=18%  Similarity=0.240  Sum_probs=54.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+.+++....                                     
T Consensus       119 ~~~lG~G~~g~V~~~~~~~~-------~~~vavK~~~~~~~~~-------------------------------------  154 (377)
T 3cbl_A          119 GEQIGRGNFGEVFSGRLRAD-------NTLVAVKSCRETLPPD-------------------------------------  154 (377)
T ss_dssp             EEEEEEETTEEEEEEEETTT-------CCEEEEEECCTTSCHH-------------------------------------
T ss_pred             eeEeccCCCCeEEEEEEecC-------CeEEEEEEccccCCHH-------------------------------------
Confidence            47899999999999999752       6999999987653210                                     


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccC--CCCCCCeEEeecccCccccchhHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY--PLVHPAVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~--~lst~rVLVmE~i~G~~i~~~~~~  425 (455)
                       ..-+|.+|++.+.++.     .++  |.+.+.  .-...-.+||||++|..+.+++..
T Consensus       155 -~~~~~~~E~~~l~~l~-----hpn--iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~  205 (377)
T 3cbl_A          155 -LKAKFLQEARILKQYS-----HPN--IVRLIGVCTQKQPIYIVMELVQGGDFLTFLRT  205 (377)
T ss_dssp             -HHTTTTHHHHHHTTCC-----CTT--BCCEEEEECSSSSCEEEEECCTTCBHHHHHHH
T ss_pred             -HHHHHHHHHHHHHhCC-----CCC--EEEEEEEEecCCCcEEEEEcCCCCCHHHHHHh
Confidence             0113345555554331     222  222221  123445899999999988887653

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=95.84  E-value=0.027  Score=52.99  Aligned_cols=129  Identities=16%  Similarity=0.081  Sum_probs=70.2

Q ss_pred             hccccc-cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHH
Q 012848          283 IFDGFE-EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESV  361 (455)
Q Consensus       283 iF~~fd-~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v  361 (455)
                      .++.++ .+.||.|+-|+||+|+.+.+       |+.||||+.++.-.....                        .+..
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~-------~~~vavK~~~~~~~~~~~------------------------~~~~   63 (298)
T 1phk_A           15 FYENYEPKEILGRGVSSVVRRCIHKPT-------CKEYAVKIIDVTGGGSFS------------------------AEEV   63 (298)
T ss_dssp             CTTTEEEEEEEEECSSEEEEEEEETTT-------TEEEEEEEEETTCSTTCC------------------------HHHH
T ss_pred             hhhccceeeeecCCCceEEEEEEEcCc-------CceEEEEEEecccccccC------------------------HHHH
Confidence            344444 58899999999999998752       699999998765422111                        1111


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccC--CCCCCCeEEeecccCccccchhHHhhh-chhhHHHHHH
Q 012848          362 QQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY--PLVHPAVLVETYEQGECVSRYVDELQG-HERLKSALAH  438 (455)
Q Consensus       362 ~ef~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~--~lst~rVLVmE~i~G~~i~~~~~~l~~-~~~~~~~LA~  438 (455)
                      ++..+.      +.+|.+.+.++.    +.+.  |++.+.  +-...-.|||||++|..+.+++..... .......++.
T Consensus        64 ~~~~~~------~~~e~~~l~~l~----~h~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~  131 (298)
T 1phk_A           64 QELREA------TLKEVDILRKVS----GHPN--IIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMR  131 (298)
T ss_dssp             HHHHHH------HHHHHHHHHHHT----TCTT--BCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHH
T ss_pred             HHHHHH------HHHHHHHHHHhc----CCCC--EeeeeeeeccCCeEEEEEeccCCCcHHHHHhccCCCCHHHHHHHHH
Confidence            122122      244555555543    2232  222222  123445899999999998887653211 1112234444


Q ss_pred             HHHHHHHHhhhccCCCC
Q 012848          439 IGTHALLKMLLVPYLNN  455 (455)
Q Consensus       439 ~g~~aflkmlf~dgFv~  455 (455)
                      .+++++ .-|-..|++|
T Consensus       132 qi~~~l-~~lH~~~i~H  147 (298)
T 1phk_A          132 ALLEVI-CALHKLNIVH  147 (298)
T ss_dssp             HHHHHH-HHHHHTTEEC
T ss_pred             HHHHHH-HHHHHCCccc
Confidence            444432 2233455554

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=95.84  E-value=0.025  Score=52.41  Aligned_cols=30  Identities=30%  Similarity=0.217  Sum_probs=24.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+..         |+.||||+.+..
T Consensus        12 ~~~lg~G~~g~V~~~~~~---------~~~vavK~~~~~   41 (271)
T 3dtc_A           12 EEIIGIGGFGKVYRAFWI---------GDEVAVKAARHD   41 (271)
T ss_dssp             EEEEEEETTEEEEEEEET---------TEEEEEEEC---
T ss_pred             eeeeccCCCeEEEEEEEc---------CCeEEEEEEecC
Confidence            478999999999999974         589999998754

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=95.81  E-value=0.027  Score=52.55  Aligned_cols=31  Identities=23%  Similarity=0.195  Sum_probs=26.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|+||+|+.++        ++.||||+.+++
T Consensus        18 ~~~lg~G~~g~Vy~~~~~~--------~~~vavK~~~~~   48 (279)
T 1qpc_A           18 VERLGAGQFGEVWMGYYNG--------HTKVAVKSLKQG   48 (279)
T ss_dssp             EEEEEEETTEEEEEEEETT--------TEEEEEEEECTT
T ss_pred             eeeecCCCCeEEEEEEEcC--------CcEEEEEEecCC
Confidence            4789999999999999753        589999998765

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=95.77  E-value=0.031  Score=52.28  Aligned_cols=32  Identities=19%  Similarity=0.235  Sum_probs=27.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+..       |+.||||+.+++
T Consensus        18 ~~~lg~G~~g~V~~~~~~~~-------~~~vaiK~~~~~   49 (288)
T 3kfa_A           18 KHKLGGGQYGEVYEGVWKKY-------SLTVAVKTLKED   49 (288)
T ss_dssp             EEESGGGTTCSEEEEEEGGG-------TEEEEEEEECSC
T ss_pred             EeecCCCCceeEEEeEecCC-------CEEEEEEecCcC
Confidence            46899999999999999762       699999998654

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=95.70  E-value=0.032  Score=58.49  Aligned_cols=111  Identities=15%  Similarity=0.164  Sum_probs=65.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|+-|.||+|+.+.        +..||||+.+++-..                          ..          
T Consensus       272 ~~~lG~G~fg~Vy~~~~~~--------~~~vavK~~~~~~~~--------------------------~~----------  307 (535)
T 2h8h_A          272 EVKLGQGCFGEVWMGTWNG--------TTRVAIKTLKPGTMS--------------------------PE----------  307 (535)
T ss_dssp             EEEEEECSSEEEEEEEETT--------TEEEEEEEECTTSSC--------------------------HH----------
T ss_pred             heecccCCCeEEEEEEECC--------CceEEEEEeCCCCCC--------------------------HH----------
Confidence            4679999999999999864        478999998875311                          00          


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCC-eEeCcccCCCCCCCeEEeecccCccccchhHHhhhchh---hHHHHHHHHHHHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKD-VSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHER---LKSALAHIGTHAL  444 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~-V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~l~~~~~---~~~~LA~~g~~af  444 (455)
                          +|.+|++.+.++.     +++ |.+-.++.  ...-.|||||++|-.+.+++....+...   ....++..++++ 
T Consensus       308 ----~~~~E~~~l~~l~-----hpniv~~~~~~~--~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~-  375 (535)
T 2h8h_A          308 ----AFLQEAQVMKKLR-----HEKLVQLYAVVS--EEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASG-  375 (535)
T ss_dssp             ----HHHHHHHHHHHCC-----CTTBCCEEEEEC--SSSCEEEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHH-
T ss_pred             ----HHHHHHHHHHhCC-----CCCEeeEEEEEe--eccceEeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHH-
Confidence                1345666665542     222 22212221  2456799999999999887653221111   122334444333 


Q ss_pred             HHhhhccCCCC
Q 012848          445 LKMLLVPYLNN  455 (455)
Q Consensus       445 lkmlf~dgFv~  455 (455)
                      |.-|-..|++|
T Consensus       376 L~~LH~~~ivH  386 (535)
T 2h8h_A          376 MAYVERMNYVH  386 (535)
T ss_dssp             HHHHHHTTCCC
T ss_pred             HHHHHhCCeeC
Confidence            33344567776

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=95.69  E-value=0.021  Score=54.12  Aligned_cols=42  Identities=21%  Similarity=0.237  Sum_probs=31.9

Q ss_pred             CCChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          277 GRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       277 G~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      ....++.|+.  -+.||.|+-|+||+|+.+.       .|+.||||+.++.
T Consensus        17 ~~~~~~~y~~--~~~lg~G~~g~V~~~~~~~-------~~~~vaiK~~~~~   58 (303)
T 3a7i_A           17 KADPEELFTK--LEKIGKGSFGEVFKGIDNR-------TQKVVAIKIIDLE   58 (303)
T ss_dssp             EECGGGTEEE--EEEEEECSSSEEEEEEETT-------TCCEEEEEEEETT
T ss_pred             CCChHHHHHH--hhhhcccCCeEEEEEEECC-------CCcEEEEEEeccc
Confidence            3455666653  3579999999999998764       2689999998764

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=95.68  E-value=0.042  Score=50.59  Aligned_cols=32  Identities=25%  Similarity=0.211  Sum_probs=27.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.+|.|+-|+||+|+..+        ++.||||+.+++.
T Consensus        13 ~~~lg~G~~g~V~~~~~~~--------~~~vaiK~~~~~~   44 (267)
T 3t9t_A           13 VQEIGSGQFGLVHLGYWLN--------KDKVAIKTIREGA   44 (267)
T ss_dssp             EEEEEEETTEEEEEEEETT--------TEEEEEEEECTTT
T ss_pred             eeEecCCCceeEEEEEecC--------CCeEEEEEccccC
Confidence            4689999999999999864        5899999987653

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=95.67  E-value=0.04  Score=54.55  Aligned_cols=99  Identities=12%  Similarity=0.070  Sum_probs=70.8

Q ss_pred             CHHHHHHHHHHHhCCChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHH
Q 012848          264 SFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAA  343 (455)
Q Consensus       264 ~~~~v~~vle~elG~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la  343 (455)
                      .++.+.+.|.+.+|.+    +.-.+-+|++.|++.++|+-+..         +.+++||+..++-.              
T Consensus        20 ~~~~l~~~L~~~lg~~----~~i~~~~~l~gG~~n~~y~v~~~---------~~~~vlK~~~~~~~--------------   72 (312)
T 3jr1_A           20 MWKSISQVLAEQFGAY----YFIKHKEKLYSGEMNEIWLINDE---------VQTVFVKINERSYR--------------   72 (312)
T ss_dssp             HHHHHHHHHHHHHSSC----CCCCEEEEECCSSSSEEEEEESS---------SCEEEEEEEEGGGH--------------
T ss_pred             cHHHHHHHHHHHhCCC----cceeeeEEeCCccceeeeEEEEC---------CCeEEEEeCCcccH--------------
Confidence            3567888899999864    22234689999999999998752         47899998775310              


Q ss_pred             HHHccccCccccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCC--CCCCCeEEeecccCccccc
Q 012848          344 KISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP--LVHPAVLVETYEQGECVSR  421 (455)
Q Consensus       344 ~l~~~~P~l~~l~l~e~v~ef~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~--lst~rVLVmE~i~G~~i~~  421 (455)
                                                  -.+..|++.++..++.    ..+.||+|+.-  ......++|||++|.+.+.
T Consensus        73 ----------------------------~~~~~E~~~L~~L~~~----~~v~VP~vl~~~~~~g~~~lvme~l~G~~~~~  120 (312)
T 3jr1_A           73 ----------------------------SMFRAEADQLALLAKT----NSINVPLVYGIGNSQGHSFLLLEALNKSKNKQ  120 (312)
T ss_dssp             ----------------------------HHHHHHHHHHHHHHHT----TSSBCCCEEEEEECSSEEEEEEECCCCCCCCT
T ss_pred             ----------------------------HHHHHHHHHHHHHHhh----CCCCcceEEEEeecCCceEEEEEeccCCCCCc
Confidence                                        0136677777776642    35889999842  2356799999999998753

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=95.67  E-value=0.029  Score=55.67  Aligned_cols=32  Identities=28%  Similarity=0.130  Sum_probs=20.8

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .++||.|+-|+||+|+.+.+       |+.||||+.+..
T Consensus        30 ~~~lG~G~~g~V~~a~~~~~-------~~~vaiK~~~~~   61 (367)
T 1cm8_A           30 LQPVGSGAYGAVCSAVDGRT-------GAKVAIKKLYRP   61 (367)
T ss_dssp             EEEC------CEEEEEETTT-------CCEEEEEECSST
T ss_pred             eEEeeecCCeEEEEEEECCC-------CCEEEEEEeCcc
Confidence            47899999999999998652       699999987553

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=95.60  E-value=0.028  Score=57.37  Aligned_cols=31  Identities=32%  Similarity=0.430  Sum_probs=27.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.++        +++||||+.+++
T Consensus       193 ~~~lG~G~fg~V~~~~~~~--------~~~vavK~~~~~  223 (454)
T 1qcf_A          193 EKKLGAGQFGEVWMATYNK--------HTKVAVKTMKPG  223 (454)
T ss_dssp             EEEEECCSSEEEEEEEETT--------TEEEEEEEECTT
T ss_pred             EEEcccCCceEEEEEEECC--------ccEEEEEEecCC
Confidence            4689999999999999864        589999999875

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=95.59  E-value=0.028  Score=53.76  Aligned_cols=33  Identities=21%  Similarity=0.140  Sum_probs=27.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+.++.-
T Consensus        41 ~~~lg~G~~g~V~~~~~~~~-------~~~vavK~~~~~~   73 (330)
T 3nsz_A           41 VRKLGRGKYSEVFEAINITN-------NEKVVVKILKPVK   73 (330)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------CCEEEEEEECSCC
T ss_pred             EEEecccCCeEEEEEEECCC-------CcEEEEEEecccc
Confidence            37899999999999997652       6999999987654

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=95.55  E-value=0.022  Score=52.73  Aligned_cols=33  Identities=18%  Similarity=0.271  Sum_probs=27.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.||.|+-|+||+|+.+.+       |+.||||+.++..
T Consensus        16 ~~~lg~G~~g~V~~~~~~~~-------~~~vaiK~~~~~~   48 (289)
T 1x8b_A           16 LEKIGSGEFGSVFKCVKRLD-------GCIYAIKRSKKPL   48 (289)
T ss_dssp             EEEEEEETTEEEEEEEETTT-------CCEEEEEEEECCC
T ss_pred             hhhhcCCCceEEEEEEEcCC-------CceEEEEEecccc
Confidence            46899999999999998752       6999999887653

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=95.55  E-value=0.092  Score=49.50  Aligned_cols=91  Identities=15%  Similarity=0.148  Sum_probs=56.1

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|+-|.||+|+....  .....|+.||||+.++.-...   +                         .       
T Consensus        28 ~~~lg~G~~g~V~~~~~~~~--~~~~~~~~vavK~~~~~~~~~---~-------------------------~-------   70 (313)
T 1t46_A           28 GKTLGAGAFGKVVEATAYGL--IKSDAAMTVAVKMLKPSAHLT---E-------------------------R-------   70 (313)
T ss_dssp             EEEEEECSSEEEEEEEEESS--SSTTCEEEEEEEEECTTCCHH---H-------------------------H-------
T ss_pred             HHhhCccCCcceEEEEEeec--cccchhhhhHHHhcCcchhHH---H-------------------------H-------
Confidence            47899999999999997421  011236999999998753210   0                         0       


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCccc--CCCCCCCeEEeecccCccccchhHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPV--YPLVHPAVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~--~~lst~rVLVmE~i~G~~i~~~~~~  425 (455)
                         -.+.+|.+.+.++.    +.++  |++.+  ..-...-.++|||++|..+.+++..
T Consensus        71 ---~~~~~E~~~l~~l~----~h~~--i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~  120 (313)
T 1t46_A           71 ---EALMSELKVLSYLG----NHMN--IVNLLGACTIGGPTLVITEYCCYGDLLNFLRR  120 (313)
T ss_dssp             ---HHHHHHHHHHHHHC----CCTT--BCCEEEEECSSSSCEEEEECCTTEEHHHHHHH
T ss_pred             ---HHHHHHHHHHhhcc----cCCC--eeeEEEEEecCCCcEEEEecCCCCCHHHHHHh
Confidence               02345555555542    2232  22222  2234566899999999999887654

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=95.49  E-value=0.025  Score=52.95  Aligned_cols=31  Identities=19%  Similarity=0.127  Sum_probs=25.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|+||+|+.+.       .|+.||||+...
T Consensus        14 ~~~lg~G~~g~V~~~~~~~-------~~~~vavK~~~~   44 (296)
T 3uzp_A           14 GRKIGSGSFGDIYLGTDIA-------AGEEVAIKLECV   44 (296)
T ss_dssp             EEEEEEETTEEEEEEEETT-------TTEEEEEEEEES
T ss_pred             EEEEccCCCeEEEEEEEcC-------CCcEEEEEEecC
Confidence            4789999999999999754       269999998654

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=95.46  E-value=0.054  Score=52.02  Aligned_cols=46  Identities=17%  Similarity=0.169  Sum_probs=30.9

Q ss_pred             ChHhhccc--cc-cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          279 RLSEIFDG--FE-EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       279 ~~~eiF~~--fd-~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.++|+.  +. .+.||.|+-|.||+|+.+.   .....|+.||||+.++.
T Consensus        15 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~---~~~~~~~~vavK~~~~~   63 (327)
T 3lxl_A           15 QDPTIFEERHLKYISQLGKGNFGSVELCRYDP---LGDNTGALVAVKQLQHS   63 (327)
T ss_dssp             --CCBCCGGGEEEEEEEEEETTEEEEEEEECT---TSSSCSEEEEEEEESSC
T ss_pred             ChhhhhchhhhhhhhhccCCCCeEEEEEEecc---CCCCcceEEEEEEeccC
Confidence            44455442  22 4789999999999999742   11234799999998654

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=95.44  E-value=0.029  Score=58.24  Aligned_cols=83  Identities=14%  Similarity=0.203  Sum_probs=54.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|+-|.||+|+.+..       |+.||||+.+++-.                          ...          
T Consensus       225 ~~~lG~G~fg~Vy~~~~~~~-------~~~vavK~~~~~~~--------------------------~~~----------  261 (495)
T 1opk_A          225 KHKLGGGQYGEVYEGVWKKY-------SLTVAVKTLKEDTM--------------------------EVE----------  261 (495)
T ss_dssp             EEESGGGTTSSEEEEEEGGG-------TEEEEEEECCSSSS--------------------------CHH----------
T ss_pred             eeEecCCCCeEEEEEEEcCC-------CeEEEEEEecCccc--------------------------chH----------
Confidence            46899999999999999862       69999999875421                          001          


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccC--CCCCCCeEEeecccCccccchhHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY--PLVHPAVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~--~lst~rVLVmE~i~G~~i~~~~~~  425 (455)
                          +|.+|++.+.++.     +++  |.+.+.  .-...-.|||||++|-.+.+++..
T Consensus       262 ----~~~~E~~~l~~l~-----hpn--iv~l~~~~~~~~~~~lv~E~~~~g~L~~~l~~  309 (495)
T 1opk_A          262 ----EFLKEAAVMKEIK-----HPN--LVQLLGVCTREPPFYIITEFMTYGNLLDYLRE  309 (495)
T ss_dssp             ----HHHHHHHHHHHCC-----CTT--BCCEEEEECSSSSCEEEEECCTTCBHHHHHHH
T ss_pred             ----HHHHHHHHHHhcC-----CCC--EeeEEEEEecCCcEEEEEEccCCCCHHHHHHh
Confidence                1345665555442     222  122221  123456899999999999887754

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=95.42  E-value=0.038  Score=53.54  Aligned_cols=36  Identities=31%  Similarity=0.438  Sum_probs=28.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.||.|+-|.||+|+.+.+  |  ..+..||||+.+.+.
T Consensus        54 ~~~lG~G~~g~V~~~~~~~~--~--~~~~~vavK~~~~~~   89 (325)
T 3kul_A           54 EKIIGSGDSGEVCYGRLRVP--G--QRDVPVAIKALKAGY   89 (325)
T ss_dssp             EEEEEETTTEEEEEEEECCT--T--SCCEEEEEEEECTTC
T ss_pred             eeEEEeCCCcEEEEEEEecC--C--CCCceEEEEecCCCC
Confidence            47899999999999999752  2  135789999987653

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=95.41  E-value=0.025  Score=52.66  Aligned_cols=32  Identities=25%  Similarity=0.103  Sum_probs=26.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|+||+|+.+..       ++.||||+..+.
T Consensus        14 ~~~lg~G~~g~V~~~~~~~~-------~~~~a~k~~~~~   45 (277)
T 3f3z_A           14 ENTIGRGSWGEVKIAVQKGT-------RIRRAAKKIPKY   45 (277)
T ss_dssp             EEEEEEETTEEEEEEEETTT-------CCEEEEEEEEGG
T ss_pred             eeEEeecCCEEEEEEEeCCC-------CcEEEEEeehhh
Confidence            46899999999999998752       689999987654

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=95.41  E-value=0.023  Score=55.29  Aligned_cols=32  Identities=22%  Similarity=0.165  Sum_probs=23.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|+||+|+-+.+       |+.||||+.+..
T Consensus        18 ~~~lG~G~fg~V~~~~~~~~-------~~~vAiK~i~~~   49 (275)
T 3hyh_A           18 VKTLGEGSFGKVKLAYHTTT-------GQKVALKIINKK   49 (275)
T ss_dssp             EEEEEC---CCEEEEECTTT-------CCEEEEEEEECC
T ss_pred             EEEEecCcCeEEEEEEECCC-------CCEEEEEEEeHH
Confidence            36899999999999997652       699999998654

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=95.40  E-value=0.011  Score=56.65  Aligned_cols=31  Identities=23%  Similarity=0.223  Sum_probs=26.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.++        |+.||||+.++.
T Consensus        35 ~~~lg~G~~g~V~~~~~~~--------~~~vavK~~~~~   65 (326)
T 3uim_A           35 KNILGRGGFGKVYKGRLAD--------GTLVAVKRLKEE   65 (326)
T ss_dssp             TTEEECCSSSEEEEECCSS--------SCCEEEEECCC-
T ss_pred             ceeEecCCCcEEEEEEecC--------CCEEEEEEeccc
Confidence            5789999999999998654        689999997654

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=95.38  E-value=0.024  Score=52.65  Aligned_cols=32  Identities=22%  Similarity=0.213  Sum_probs=27.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.|+.|+-|+||+|+.+.       +|+.||||+.++.
T Consensus        16 ~~~lg~G~~g~V~~~~~~~-------~~~~vavK~~~~~   47 (284)
T 2a19_B           16 IELIGSGGFGQVFKAKHRI-------DGKTYVIKRVKYN   47 (284)
T ss_dssp             EEEEECSSSCCEEEEEETT-------TCCEEEEEEEECC
T ss_pred             eeeeccCCceEEEEEEEcC-------CCeEEEEEEeccc
Confidence            4689999999999999874       2699999998765

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=95.38  E-value=0.094  Score=51.94  Aligned_cols=40  Identities=23%  Similarity=0.157  Sum_probs=29.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.||.|+-|.||+|+......+....++.||||+.++..
T Consensus        74 ~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~  113 (382)
T 3tt0_A           74 GKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA  113 (382)
T ss_dssp             EEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTC
T ss_pred             eeEEecCCCeEEEEEEEccccccccccceEEEEEeecccc
Confidence            4789999999999999753211112346899999987653

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=95.38  E-value=0.095  Score=50.64  Aligned_cols=37  Identities=27%  Similarity=0.252  Sum_probs=28.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+....  +....|+.||||+.+.+
T Consensus        27 ~~~lG~G~~g~Vy~~~~~~~--~~~~~~~~vavK~~~~~   63 (359)
T 3vhe_A           27 GKPLGRGAFGQVIEADAFGI--DKTATCRTVAVKMLKEG   63 (359)
T ss_dssp             EEEEEECSSEEEEEEEEESS--SSTTCEEEEEEEEECTT
T ss_pred             ceeecCCCCceEEEEEeccc--cccccceEEEEEEecCc
Confidence            57899999999999997531  12234799999998765

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=95.37  E-value=0.05  Score=51.17  Aligned_cols=40  Identities=18%  Similarity=0.218  Sum_probs=28.9

Q ss_pred             ChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          279 RLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       279 ~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      ++.+.|+-  .+.||.|+-|.||+|+.+.+       |+.||||+..+.
T Consensus        16 ~~~~~y~i--~~~lg~G~~g~V~~~~~~~~-------~~~~aiK~~~~~   55 (302)
T 2j7t_A           16 DPNEVWEI--VGELGDGAFGKVYKAKNKET-------GALAAAKVIETK   55 (302)
T ss_dssp             CGGGTEEE--EEEEECSTTCCEEEEEETTT-------CCEEEEEEEC--
T ss_pred             CCccceee--cceeccCCCeEEEEEEEcCC-------CcEEEEEEecCC
Confidence            34444432  35799999999999998752       689999997654

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=95.33  E-value=0.034  Score=51.95  Aligned_cols=30  Identities=23%  Similarity=0.216  Sum_probs=25.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.|+.|+-|.||+|+.+         |+.||||+.+++
T Consensus        26 ~~~lg~G~~g~V~~~~~~---------~~~vavK~~~~~   55 (278)
T 1byg_A           26 LQTIGKGEFGDVMLGDYR---------GNKVAVKCIKND   55 (278)
T ss_dssp             EEEEEECSSCEEEEEEET---------TEEEEEEECCCC
T ss_pred             EeEEecCCCceEEEEEEc---------CCEEEEEEecch
Confidence            478999999999999874         589999987643

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=95.31  E-value=0.045  Score=52.65  Aligned_cols=36  Identities=22%  Similarity=0.129  Sum_probs=27.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|+||+|+....   ....|+.||||+.++.
T Consensus        46 ~~~lg~G~~g~V~~~~~~~~---~~~~~~~vavK~~~~~   81 (326)
T 2w1i_A           46 LQQLGKGNFGSVEMCRYDPL---QDNTGEVVAVKKLQHS   81 (326)
T ss_dssp             EEEEECCSSEEEEEEEECTT---SSSCCEEEEEEEESSC
T ss_pred             eeeeccCCCeEEEEEEeccc---cCCCceEEEEEEeccC
Confidence            36899999999999996320   1124799999998764

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=95.30  E-value=0.029  Score=55.04  Aligned_cols=37  Identities=22%  Similarity=0.198  Sum_probs=25.8

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      +.||.|+-|.||+|+.++.  .....|+.||||+.+++-
T Consensus        71 ~~lG~G~~g~Vy~~~~~~~--~~~~~~~~vavK~~~~~~  107 (365)
T 3e7e_A           71 HLLGEGAFAQVYEATQGDL--NDAKNKQKFVLKVQKPAN  107 (365)
T ss_dssp             EEEEECSSEEEEEEEC---------CCCCEEEEEESSCC
T ss_pred             EEeeccCCEEEEEEEecCC--cccccCcEEEEEEeCCCC
Confidence            4699999999999975431  112347999999988764

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=95.28  E-value=0.014  Score=58.69  Aligned_cols=30  Identities=30%  Similarity=0.291  Sum_probs=25.7

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      +.||.|+-|.||+|+-+.+       |+.||||+.+.
T Consensus        64 ~~lG~G~fG~Vy~a~~~~~-------g~~vAiK~i~~   93 (336)
T 4g3f_A           64 PRVGRGSFGEVHRMKDKQT-------GFQCAVKKVRL   93 (336)
T ss_dssp             EEEEEETTEEEEEEEETTT-------CCEEEEEEEET
T ss_pred             cEeccCCCeEEEEEEECCC-------CCEEEEEEECH
Confidence            4599999999999998752       69999999864

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=95.26  E-value=0.018  Score=53.74  Aligned_cols=33  Identities=18%  Similarity=0.082  Sum_probs=27.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.|+.|+-|.||+|+.+.+       |+.||||+.+...
T Consensus        10 ~~~lg~G~~g~V~~~~~~~~-------~~~~avK~~~~~~   42 (283)
T 3bhy_A           10 GEELGSGQFAIVRKCRQKGT-------GKEYAAKFIKKRR   42 (283)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------CCEEEEEEEEBCS
T ss_pred             HHhhcccCceEEEEEEEcCC-------CCeeehHHhhhcc
Confidence            36799999999999998752       6999999987653

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=95.25  E-value=0.078  Score=50.87  Aligned_cols=90  Identities=18%  Similarity=0.240  Sum_probs=50.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|+-|.||+|+....  +....|+.||||+.+.....                            .         
T Consensus        35 ~~~lg~G~~g~Vy~~~~~~~--~~~~~~~~vavK~~~~~~~~----------------------------~---------   75 (327)
T 2yfx_A           35 IRGLGHGAFGEVYEGQVSGM--PNDPSPLQVAVKTLPEVCSE----------------------------Q---------   75 (327)
T ss_dssp             EEECC--CSSCEEEEEC----------CCEEEEEECCSSCCH----------------------------H---------
T ss_pred             EEEEcCCCCeeEEEEEEcCC--CCCCccceEEEEEeccccch----------------------------h---------
Confidence            36899999999999997531  11234689999987643211                            0         


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccC--CCCCCCeEEeecccCccccchhHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY--PLVHPAVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~--~lst~rVLVmE~i~G~~i~~~~~~  425 (455)
                       .+.++.+|+..+.++     +.+.  |++.+.  .-...-.+||||++|..+.+++..
T Consensus        76 -~~~~~~~E~~~l~~l-----~h~~--iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~  126 (327)
T 2yfx_A           76 -DELDFLMEALIISKF-----NHQN--IVRCIGVSLQSLPRFILMELMAGGDLKSFLRE  126 (327)
T ss_dssp             -HHHHHHHHHHHHHHC-----CCTT--BCCEEEEECSSSSCEEEEECCTTEEHHHHHHH
T ss_pred             -hHHHHHHHHHHHhhC-----CCCC--CCeEEEEEcCCCCcEEEEecCCCCcHHHHHHh
Confidence             011245566555544     1222  222221  223445899999999999888754

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=95.22  E-value=0.045  Score=52.59  Aligned_cols=36  Identities=17%  Similarity=0.087  Sum_probs=27.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+..   ....|+.||||+.+.+
T Consensus        36 ~~~lG~G~~g~V~~~~~~~~---~~~~~~~vavK~~~~~   71 (318)
T 3lxp_A           36 IRDLGEGHFGKVSLYCYDPT---NDGTGEMVAVKALKAD   71 (318)
T ss_dssp             EEEEEECSSEEEEEEEECSC---C--CCEEEEEEEECTT
T ss_pred             hheecCCCCeEEEEEEEccC---CCCCCcEEEEEEeccc
Confidence            37899999999999987531   1224799999998765

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=95.22  E-value=0.037  Score=56.55  Aligned_cols=30  Identities=23%  Similarity=0.216  Sum_probs=25.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+         |+.||||+.+++
T Consensus       198 ~~~lG~G~fg~V~~~~~~---------~~~vavK~~~~~  227 (450)
T 1k9a_A          198 LQTIGKGEFGDVMLGDYR---------GNKVAVKCIKND  227 (450)
T ss_dssp             EEEEEECSSEEEEEEEET---------TEEEEEEEESSC
T ss_pred             EeeecCcCCeeEEEEEec---------CCeEEEEEeCCc
Confidence            478999999999999884         589999998754

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=95.20  E-value=0.041  Score=52.60  Aligned_cols=33  Identities=27%  Similarity=0.193  Sum_probs=27.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.||.|+.|+||+|+-+.       .|+.||||+.+++.
T Consensus        17 ~~~lg~G~~g~V~~~~~~~-------~~~~vavK~~~~~~   49 (311)
T 3ork_A           17 GEILGFGGMSEVHLARDLR-------DHRDVAVKVLRADL   49 (311)
T ss_dssp             EEEEEECSSEEEEEEEETT-------TTEEEEEEEECTTT
T ss_pred             EEEEccCCCEEEEEEEECC-------CCceEEEEEeCccc
Confidence            4789999999999999764       26999999987653

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=95.20  E-value=0.024  Score=52.80  Aligned_cols=78  Identities=15%  Similarity=0.015  Sum_probs=54.1

Q ss_pred             cccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHHH
Q 012848          291 PVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMS  370 (455)
Q Consensus       291 PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~~  370 (455)
                      ..+.+|-++||+....         |+.++||+.+++...                    .                   
T Consensus        21 ~~~g~s~~~v~~~~~~---------~~~~vlK~~~~~~~~--------------------~-------------------   52 (263)
T 3tm0_A           21 DTEGMSPAKVYKLVGE---------NENLYLKMTDSRYKG--------------------T-------------------   52 (263)
T ss_dssp             CCSCCSSSEEEEEECS---------SCEEEEEEECGGGTT--------------------S-------------------
T ss_pred             eccCCCCCeEEEEECC---------CCcEEEEeCCcccCC--------------------C-------------------
Confidence            4566788999998742         479999998765210                    0                   


Q ss_pred             hcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCC--CCCeEEeecccCccccch
Q 012848          371 QVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLV--HPAVLVETYEQGECVSRY  422 (455)
Q Consensus       371 ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~ls--t~rVLVmE~i~G~~i~~~  422 (455)
                      .-+++.|++.++....      .+.+|+++.-..  ....++|||++|.++.+.
T Consensus        53 ~~~~~~E~~~l~~l~~------~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~~~  100 (263)
T 3tm0_A           53 TYDVEREKDMMLWLEG------KLPVPKVLHFERHDGWSNLLMSEADGVLCSEE  100 (263)
T ss_dssp             TTCHHHHHHHHHHHTT------TSCCCCEEEEEEETTEEEEEEECCSSEEHHHH
T ss_pred             HHHHHHHHHHHHHHhc------CCCCCeEEEEEecCCceEEEEEecCCeehhhc
Confidence            0246788888876643      367898884333  334599999999998753

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=95.14  E-value=0.09  Score=50.34  Aligned_cols=91  Identities=14%  Similarity=0.147  Sum_probs=56.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|+-|.||+|+...  .|+...++.||||+.++....                            +..       
T Consensus        51 ~~~lG~G~~g~Vy~~~~~~--~~~~~~~~~vavK~~~~~~~~----------------------------~~~-------   93 (333)
T 2i1m_A           51 GKTLGAGAFGKVVEATAFG--LGKEDAVLKVAVKMLKSTAHA----------------------------DEK-------   93 (333)
T ss_dssp             EEEEEECSSEEEEEEEETT--CSSSCCCCEEEEEEECTTCCH----------------------------HHH-------
T ss_pred             eeEeccCCCcceEEEEecC--CCcccchhHHHHHhcccccCh----------------------------HHH-------
Confidence            3689999999999999865  243334579999998765321                            000       


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCccc--CCCCCCCeEEeecccCccccchhHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPV--YPLVHPAVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~--~~lst~rVLVmE~i~G~~i~~~~~~  425 (455)
                         -.+.+|++.+.++.    +.++  |++.+  ..-...-.+||||++|.++.+++..
T Consensus        94 ---~~~~~E~~~l~~l~----~h~~--iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~  143 (333)
T 2i1m_A           94 ---EALMSELKIMSHLG----QHEN--IVNLLGACTHGGPVLVITEYCCYGDLLNFLRR  143 (333)
T ss_dssp             ---HHHHHHHHHHHHHC----CCTT--BCCEEEEECSSSSCEEEEECCTTEEHHHHHHH
T ss_pred             ---HHHHHHHHHHHhhc----CCCC--eeeEEEEEecCCceEEEEecCCCCcHHHHHHH
Confidence               02345555555442    2222  22222  1234567899999999999887654

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=95.13  E-value=0.089  Score=52.15  Aligned_cols=93  Identities=19%  Similarity=0.229  Sum_probs=55.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|+-|+||+|+......+....|..||||+.+++..+   .+                         ++      
T Consensus        86 ~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~---~~-------------------------~~------  131 (370)
T 2psq_A           86 GKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATE---KD-------------------------LS------  131 (370)
T ss_dssp             EEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBH---HH-------------------------HH------
T ss_pred             eeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCH---HH-------------------------HH------
Confidence            478999999999999975311111234689999998865321   01                         00      


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccC--CCCCCCeEEeecccCccccchhHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY--PLVHPAVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~--~lst~rVLVmE~i~G~~i~~~~~~  425 (455)
                          ++.+|.+.+.++.    +.++  |++.+.  .-...-.+||||++|..+.+++..
T Consensus       132 ----~~~~E~~~l~~l~----~hpn--Iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~  180 (370)
T 2psq_A          132 ----DLVSEMEMMKMIG----KHKN--IINLLGACTQDGPLYVIVEYASKGNLREYLRA  180 (370)
T ss_dssp             ----HHHHHHHHHHHSC----CCTT--BCCEEEEECSSSSCEEEEECCTTCBHHHHHHH
T ss_pred             ----HHHHHHHHHHHhc----CCCC--EeeEEEEEccCCCEEEEEEcCCCCCHHHHHHh
Confidence                1244554444431    2222  222221  223456799999999999887754

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=95.10  E-value=0.1  Score=49.27  Aligned_cols=37  Identities=27%  Similarity=0.252  Sum_probs=28.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+....  +....|+.||||+.+++
T Consensus        32 ~~~lg~G~~g~Vy~~~~~~~--~~~~~~~~vavK~~~~~   68 (316)
T 2xir_A           32 GKPLGRGAFGQVIEADAFGI--DKTATCRTVAVKMLKEG   68 (316)
T ss_dssp             EEEEEECSSEEEEEEEEESS--SSTTCEEEEEEEEECTT
T ss_pred             eeEEcCCCceeEEEEEEecC--CccccceEEEEEecccC
Confidence            47899999999999986531  11234699999998765

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=95.08  E-value=0.07  Score=51.88  Aligned_cols=32  Identities=25%  Similarity=0.107  Sum_probs=27.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|+||+|+.+.+       |+.||||+.+..
T Consensus        29 ~~~lg~G~~g~V~~~~~~~~-------~~~vaiK~~~~~   60 (353)
T 3coi_A           29 PTHVGSGAYGSVCSAIDKRS-------GEKVAIKKLSRP   60 (353)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------TEEEEEEEESST
T ss_pred             eeeEecCCCeEEEEEEECCC-------CCEEEEEEeccc
Confidence            57899999999999998652       699999998754

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=95.06  E-value=0.06  Score=51.56  Aligned_cols=90  Identities=14%  Similarity=0.035  Sum_probs=52.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+.++.-...               .   ..     .        ..
T Consensus        15 ~~~lg~G~~g~V~~~~~~~~-------~~~vavK~~~~~~~~~---------------~---~~-----~--------~~   56 (322)
T 2ycf_A           15 SKTLGSGACGEVKLAFERKT-------CKKVAIKIISKRKFAI---------------G---SA-----R--------EA   56 (322)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------TEEEEEEEECC------------------------------------------
T ss_pred             eeEEecCCCEEEEEEEEcCC-------CcEEEEEEeehhhhhh---------------c---cc-----c--------cc
Confidence            46899999999999998752       6999999987642100               0   00     0        00


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCC-eEeCcccCCCCCCCeEEeecccCccccchh
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKD-VSFPKPVYPLVHPAVLVETYEQGECVSRYV  423 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~-V~vP~~~~~lst~rVLVmE~i~G~~i~~~~  423 (455)
                      ....++.+|.+.+.++.     .++ +.+-..+  ....-.+||||++|..+.+++
T Consensus        57 ~~~~~~~~E~~~l~~l~-----h~~i~~~~~~~--~~~~~~lv~e~~~~~~L~~~~  105 (322)
T 2ycf_A           57 DPALNVETEIEILKKLN-----HPCIIKIKNFF--DAEDYYIVLELMEGGELFDKV  105 (322)
T ss_dssp             ----CHHHHHHHHHHCC-----CTTBCCEEEEE--ESSSEEEEEECCTTEETHHHH
T ss_pred             hhhhhHHHHHHHHHhCC-----CCCCceEeeEE--cCCceEEEEecCCCCcHHHHH
Confidence            11235667777666542     222 1121111  123358999999998887654

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=95.05  E-value=0.078  Score=52.81  Aligned_cols=114  Identities=15%  Similarity=0.048  Sum_probs=64.8

Q ss_pred             CCCCCHHHHHHHHHHHhCCChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHH
Q 012848          260 APEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII  339 (455)
Q Consensus       260 vpp~~~~~v~~vle~elG~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il  339 (455)
                      ..+.+.+.+.+.+. .+|.-...  ..++-+|++.|+.++||+++...   +    |+.|+||...|..+ .+..|    
T Consensus         9 ~~~l~~~~v~~~l~-~~~~~~~~--~~~~~~~lg~G~~n~vyrv~~~~---~----~~~~vvK~~~~~~r-~~~~~----   73 (397)
T 2olc_A            9 YETLNESSAVALAV-KLGLFPSK--STLTCQEIGDGNLNYVFHIYDQE---H----DRALIIKQAVPYAK-VVGES----   73 (397)
T ss_dssp             CCCCCHHHHHHHHH-HTTC-------CCEEEECCSSSSEEEEEEEC-----------CEEEEEEECCC------------
T ss_pred             cccCCHHHHHHHHH-hcCcCCCC--CceEEEECCCCceEEEEEEEECC---C----CcEEEEEecchhhc-ccCCC----
Confidence            34556677777777 55531111  12567899999999999998754   1    58999999988642 00000    


Q ss_pred             HHHHHHHccccCccccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccc
Q 012848          340 NLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECV  419 (455)
Q Consensus       340 ~~la~l~~~~P~l~~l~l~e~v~ef~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i  419 (455)
                               .+    .....              +..|++.+....+.    ....+|++|..-....+++|||++|..+
T Consensus        74 ---------~~----~~~~r--------------~~~E~~~L~~l~~~----~~~~vP~~~~~d~~~~~lvmE~l~g~~~  122 (397)
T 2olc_A           74 ---------WP----LTIDR--------------ARIESSALIRQGEH----VPHLVPRVFYSDTEMAVTVMEDLSHLKI  122 (397)
T ss_dssp             ---------CC----CCTTH--------------HHHHHHHHHHHHTT----CGGGSCCEEEEETTTTEEEECCCTTSEE
T ss_pred             ---------Cc----CcHHH--------------HHHHHHHHHHhhhh----CCCCcCeEEEEcCCccEEEEEeCCCcch
Confidence                     00    01111              24455555554432    2346888874323457899999999543

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=95.04  E-value=0.1  Score=50.18  Aligned_cols=84  Identities=23%  Similarity=0.224  Sum_probs=53.1

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|+-|.||+|+..         |+.||||+....-..                           .+.+++     
T Consensus        42 ~~~lG~G~~g~V~~~~~~---------~~~vavK~~~~~~~~---------------------------~~~~~~-----   80 (309)
T 3p86_A           42 KEKIGAGSFGTVHRAEWH---------GSDVAVKILMEQDFH---------------------------AERVNE-----   80 (309)
T ss_dssp             EEEEEECSSEEEEEEEET---------TEEEEEEEECCCCCS---------------------------HHHHHH-----
T ss_pred             eeEeecCCCeEEEEEEEC---------CCcEEEEEecCCCCC---------------------------HHHHHH-----
Confidence            578999999999999863         589999998654210                           111111     


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccC--CCCCCCeEEeecccCccccchhHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY--PLVHPAVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~--~lst~rVLVmE~i~G~~i~~~~~~  425 (455)
                           +.+|++.+.++.     .++  |++.+.  .-...-.+||||++|..+.+++..
T Consensus        81 -----~~~E~~~l~~l~-----hp~--iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~  127 (309)
T 3p86_A           81 -----FLREVAIMKRLR-----HPN--IVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHK  127 (309)
T ss_dssp             -----HHHHHHHHHHCC-----CTT--BCCEEEEECSTTCCEEEEECCTTCBHHHHHHS
T ss_pred             -----HHHHHHHHHhCC-----CCC--EeeEEEEEEECCceEEEEecCCCCcHHHHHhh
Confidence                 345666665542     222  222222  222345799999999999887643

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=95.02  E-value=0.12  Score=51.02  Aligned_cols=90  Identities=18%  Similarity=0.239  Sum_probs=53.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|+-|.||+|+.+..  +....|+.||||+.+......                                     
T Consensus        76 ~~~LG~G~fg~Vy~~~~~~~--~~~~~~~~vavK~~~~~~~~~-------------------------------------  116 (367)
T 3l9p_A           76 IRGLGHGAFGEVYEGQVSGM--PNDPSPLQVAVKTLPEVCSEQ-------------------------------------  116 (367)
T ss_dssp             EEECCCCSSSCEEEEEECC-------CCEEEEEEECCSSCCHH-------------------------------------
T ss_pred             eeEeeeCCCEEEEEEEEccC--CCCCcceeEEEEecccccChh-------------------------------------
Confidence            36799999999999998631  122347899999875432110                                     


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCccc--CCCCCCCeEEeecccCccccchhHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPV--YPLVHPAVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~--~~lst~rVLVmE~i~G~~i~~~~~~  425 (455)
                       .+.++.+|+..+.++    + .++  |.+.+  ..-.....+||||++|..+.+++..
T Consensus       117 -~~~~~~~E~~~l~~l----~-hpn--Iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~  167 (367)
T 3l9p_A          117 -DELDFLMEALIISKF----N-HQN--IVRCIGVSLQSLPRFILLELMAGGDLKSFLRE  167 (367)
T ss_dssp             -HHHHHHHHHHHHHHC----C-CTT--BCCEEEEECSSSSCEEEEECCTTEEHHHHHHH
T ss_pred             -hHHHHHHHHHHHHhC----C-CCC--CCeEEEEEecCCCCEEEEEeCCCCCHHHHHHh
Confidence             011234555555544    1 222  12222  1223456899999999998887654

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=95.02  E-value=0.047  Score=50.52  Aligned_cols=32  Identities=25%  Similarity=0.235  Sum_probs=26.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.|+.|+.|+||+|+.+.+       |+.||||+.++.
T Consensus        12 ~~~lg~G~~g~V~~~~~~~~-------~~~vavK~~~~~   43 (276)
T 2yex_A           12 VQTLGEGAYGEVQLAVNRVT-------EEAVAVKIVDMK   43 (276)
T ss_dssp             EEEEEECSSSEEEEEEETTT-------CCEEEEEEEEGG
T ss_pred             EEEeecCCCcEEEEEEECCC-------CcEEEEEEeeec
Confidence            46899999999999998752       689999998653

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=95.02  E-value=0.086  Score=50.75  Aligned_cols=91  Identities=19%  Similarity=0.138  Sum_probs=54.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|+-|.||+|+....  +....|+.||||+.++......                            .       
T Consensus        50 ~~~lG~G~~g~V~~~~~~~~--~~~~~~~~vavK~~~~~~~~~~----------------------------~-------   92 (344)
T 1rjb_A           50 GKVLGSGAFGKVMNATAYGI--SKTGVSIQVAVKMLKEKADSSE----------------------------R-------   92 (344)
T ss_dssp             EEEEEECSSEEEEEEEEESC--SSSSCEEEEEEEEECC----------------------------------C-------
T ss_pred             eeeecCCCCceeEEeeeecc--ccCCcceEEEEEecccccCHHH----------------------------H-------
Confidence            46899999999999997431  1122468999999876521100                            0       


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCccc--CCCCCCCeEEeecccCccccchhHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPV--YPLVHPAVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~--~~lst~rVLVmE~i~G~~i~~~~~~  425 (455)
                         -.+.+|++.+.++.    +.+.  |++.+  ......-.|||||++|..+.+++..
T Consensus        93 ---~~~~~E~~~l~~l~----~hp~--iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~  142 (344)
T 1rjb_A           93 ---EALMSELKMMTQLG----SHEN--IVNLLGACTLSGPIYLIFEYCCYGDLLNYLRS  142 (344)
T ss_dssp             ---HHHHHHHHHHHHHC----CCTT--BCCEEEEECSSSSCEEEEECCTTCBHHHHHHT
T ss_pred             ---HHHHHHHHHHHhhc----CCCC--eeeEEEEEeeCCccEEEEecCCCCcHHHHHhh
Confidence               01244555555442    2232  22222  2234567899999999999887654

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=94.99  E-value=0.086  Score=49.99  Aligned_cols=34  Identities=21%  Similarity=0.199  Sum_probs=27.6

Q ss_pred             cccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          287 FEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       287 fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.++.||.|+-|+||+|+-+.       .|+.||||+.+..
T Consensus        16 i~~~~lg~G~~g~V~~~~~~~-------~~~~vavK~~~~~   49 (316)
T 2ac3_A           16 LQEDVLGEGAHARVQTCINLI-------TSQEYAVKIIEKQ   49 (316)
T ss_dssp             ECCCCCCCCSSEEEEEEECSS-------SCCEEEEEEEECC
T ss_pred             ecCceecCCceEEEEEEEEcC-------CCcEEEEEEEeeC
Confidence            345789999999999999764       2699999997654

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=94.99  E-value=0.045  Score=55.24  Aligned_cols=31  Identities=10%  Similarity=-0.011  Sum_probs=20.6

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.||.|+-|.||+|+-+.+       |+.||||+.+..
T Consensus        30 ~~lG~G~fg~V~~a~~~~~-------~~~vAiK~i~~~   60 (350)
T 4b9d_A           30 QKIGEGSFGKAILVKSTED-------GRQYVIKEINIS   60 (350)
T ss_dssp             EEC------CEEEEEETTT-------CCEEEEEEEECT
T ss_pred             EEEecCCCeEEEEEEECCC-------CCEEEEEEEehH
Confidence            6799999999999998752       699999998653

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=94.98  E-value=0.055  Score=50.83  Aligned_cols=34  Identities=32%  Similarity=0.508  Sum_probs=26.8

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      ++.||.|+-|+||+|+.+..     ..|+.||||+.+++
T Consensus        15 ~~~lg~G~~g~Vy~~~~~~~-----~~~~~vavK~~~~~   48 (287)
T 1u59_A           15 DIELGCGNFGSVRQGVYRMR-----KKQIDVAIKVLKQG   48 (287)
T ss_dssp             EEEEECCTTEEEEEEEEC--------CCEEEEEEEECSS
T ss_pred             hccccccCceeEEEeEeccC-----CCcceEEEEecCCc
Confidence            45899999999999997542     12689999998875

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=94.97  E-value=0.072  Score=51.60  Aligned_cols=35  Identities=14%  Similarity=0.086  Sum_probs=27.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+....    ...|+.||||+.+..
T Consensus        22 ~~~lG~G~~g~V~~~~~~~~----~~~~~~~aiK~~~~~   56 (327)
T 3a62_A           22 LRVLGKGGYGKVFQVRKVTG----ANTGKIFAMKVLKKA   56 (327)
T ss_dssp             EEEEEEETTEEEEEEEECSS----TTTTCEEEEEEECCC
T ss_pred             EEEEEeCCCEEEEEEEEecc----CCCCcEEEEEEEEHH
Confidence            47899999999999998531    113799999998765

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=94.96  E-value=0.059  Score=51.11  Aligned_cols=31  Identities=26%  Similarity=0.326  Sum_probs=24.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.|+.|+.|.||+|+.+.       +|+.||||+.++
T Consensus        37 ~~~lg~G~~g~Vy~~~~~~-------~~~~vavK~~~~   67 (310)
T 2wqm_A           37 EKKIGRGQFSEVYRAACLL-------DGVPVALKKVQI   67 (310)
T ss_dssp             EEEEECC--CEEEEEEETT-------TCCEEEEEEECT
T ss_pred             EEeecCCCCceEEEEEEcC-------CCceEEEEeeeh
Confidence            4789999999999999865       269999998875

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=94.92  E-value=0.041  Score=51.10  Aligned_cols=31  Identities=19%  Similarity=0.251  Sum_probs=26.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|+||+|+.+.+       |+.||||+.++
T Consensus        16 ~~~lg~G~~g~V~~~~~~~~-------~~~vaiK~~~~   46 (276)
T 2h6d_A           16 GDTLGVGTFGKVKIGEHQLT-------GHKVAVKILNR   46 (276)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------CCEEEEEEEEH
T ss_pred             EeeecCCCCeEEEEEEECCC-------CceEEEEEecc
Confidence            47899999999999998742       69999998764

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=94.88  E-value=0.14  Score=47.81  Aligned_cols=35  Identities=17%  Similarity=0.210  Sum_probs=26.8

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|+||+|+...+    ...+..||||+.+..
T Consensus        20 ~~~lg~G~~g~Vy~~~~~~~----~~~~~~vaiK~~~~~   54 (281)
T 1mp8_A           20 GRCIGEGQFGDVHQGIYMSP----ENPALAVAIKTCKNC   54 (281)
T ss_dssp             EEEEEECSSSEEEEEEECCC------CCEEEEEEECTTT
T ss_pred             EeEeeecCCeeEEEEEEecC----CCCceEEEEEecccc
Confidence            47899999999999998642    123678999987654

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=94.84  E-value=0.12  Score=50.60  Aligned_cols=106  Identities=9%  Similarity=0.057  Sum_probs=69.3

Q ss_pred             CCCCCHHHHHHHHHHHhCCChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC--CCcccchHhHHH
Q 012848          260 APEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH--PGVGESIRRDFV  337 (455)
Q Consensus       260 vpp~~~~~v~~vle~elG~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr--PgV~~~i~~DL~  337 (455)
                      .++.+.+.+.+.+.+.++.. .   ...+-++++.|....||+.+..         +..+++|+.+  |+..        
T Consensus        18 ~~~ld~~~l~~~l~~~~~~~-~---~~~~~~~l~~G~sn~~y~v~~~---------~~~~vlr~~~~p~~~~--------   76 (359)
T 3dxp_A           18 QQRFDTEALEAWMRQHVEGF-A---GPLSVEQFKGGQSNPTFKLVTP---------GQTYVMRAKPGPKSKL--------   76 (359)
T ss_dssp             --CCCHHHHHHHHHHHSTTC-C---CCCEEEECCC-CCSCEEEEECS---------SCEEEEECCCC-------------
T ss_pred             ccCCCHHHHHHHHHHhCCCC-C---CCceEEEcCCcccceEEEEEEC---------CceEEEEeCCCCCCCC--------
Confidence            34567788888888887531 1   1345688999999999998763         3689999887  6521        


Q ss_pred             HHHHHHHHHccccCccccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCC-----CeEEee
Q 012848          338 IINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHP-----AVLVET  412 (455)
Q Consensus       338 il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~-----rVLVmE  412 (455)
                                 .+                   ..-++.+|++.++...+     ..+.+|+++.-....     ..++||
T Consensus        77 -----------~~-------------------~~~~~~~E~~~l~~L~~-----~~vpvP~~~~~~~~~~~~g~~~~vme  121 (359)
T 3dxp_A           77 -----------LP-------------------SAHAIEREYRVMDALAG-----TDVPVAKMYALCEDESVIGRAFYIME  121 (359)
T ss_dssp             -----------------------------------CHHHHHHHHHHHTT-----SSSCCCCEEEEECCTTTTSSCEEEEE
T ss_pred             -----------CC-------------------cHHHHHHHHHHHHHhhc-----CCCCCCcEEEECCCCCccCCeEEEEE
Confidence                       00                   11366778887776653     357799998533333     579999


Q ss_pred             cccCccccc
Q 012848          413 YEQGECVSR  421 (455)
Q Consensus       413 ~i~G~~i~~  421 (455)
                      |++|..+.+
T Consensus       122 ~v~G~~l~~  130 (359)
T 3dxp_A          122 FVSGRVLWD  130 (359)
T ss_dssp             CCCCBCCCC
T ss_pred             ecCCeecCC
Confidence            999998854

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=94.83  E-value=0.073  Score=50.56  Aligned_cols=32  Identities=22%  Similarity=0.145  Sum_probs=26.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|+||+|+-+.       .|+.||||+.+..
T Consensus        16 ~~~lg~G~~g~V~~~~~~~-------~~~~vaiK~~~~~   47 (294)
T 4eqm_A           16 VDKLGGGGMSTVYLAEDTI-------LNIKVAIKAIFIP   47 (294)
T ss_dssp             EEEEEEETTEEEEEEEETT-------TCSEEEEEEEECC
T ss_pred             EEEEccCCCEEEEEEEECC-------CCCeEEEEEeccC
Confidence            4689999999999998764       2699999987543

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=94.83  E-value=0.23  Score=46.24  Aligned_cols=117  Identities=13%  Similarity=0.051  Sum_probs=65.1

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|+-|+||+|+..+.    ...++.||||+.+++...                            +..+      
T Consensus        17 ~~~lg~G~~g~Vy~~~~~~~----~~~~~~vavK~~~~~~~~----------------------------~~~~------   58 (281)
T 3cc6_A           17 NRILGEGFFGEVYEGVYTNH----KGEKINVAVKTCKKDCTL----------------------------DNKE------   58 (281)
T ss_dssp             EEEEEECSSSEEEEEEEECT----TCCEEEEEEEECCTTSCH----------------------------HHHH------
T ss_pred             EEEEEecCCeeEEEeEEcCC----CCCcceEEEEecccccCc----------------------------hHHH------
Confidence            57899999999999998642    113568999998875311                            0001      


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCC-eEeCcccCCCCCCCeEEeecccCccccchhHHhhh--chhhHHHHHHHHHHHHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKD-VSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQG--HERLKSALAHIGTHALL  445 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~-V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~l~~--~~~~~~~LA~~g~~afl  445 (455)
                          ++.+|++.+.++.     .++ +.+-..+  ......++|||++|..+.+++.....  .......++..++++ +
T Consensus        59 ----~~~~E~~~l~~l~-----h~~i~~~~~~~--~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~-l  126 (281)
T 3cc6_A           59 ----KFMSEAVIMKNLD-----HPHIVKLIGII--EEEPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKA-M  126 (281)
T ss_dssp             ----HHHHHHHHHHHHC-----CTTBCCEEEEE--CSSSCEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHH-H
T ss_pred             ----HHHHHHHHHHhCC-----CCCcceEEEEE--cCCCCEEEEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHH-H
Confidence                1345665555552     222 1111111  12345799999999999887654211  111122333333332 3


Q ss_pred             HhhhccCCCC
Q 012848          446 KMLLVPYLNN  455 (455)
Q Consensus       446 kmlf~dgFv~  455 (455)
                      ..|-..|++|
T Consensus       127 ~~lH~~~i~H  136 (281)
T 3cc6_A          127 AYLESINCVH  136 (281)
T ss_dssp             HHHHHTTCCC
T ss_pred             HHHHHCCccc
Confidence            3344566666

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=94.82  E-value=0.023  Score=54.72  Aligned_cols=43  Identities=21%  Similarity=0.285  Sum_probs=32.8

Q ss_pred             CCChHhhccccc-cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          277 GRRLSEIFDGFE-EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       277 G~~~~eiF~~fd-~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      |..+.++-..+. .+.||.|+-|.||+|+.+.       .|+.||||+.++
T Consensus        18 ~~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~-------~~~~vaiK~~~~   61 (345)
T 3hko_A           18 GGSLLELQKKYHLKGAIGQGSYGVVRVAIENQ-------TRAIRAIKIMNK   61 (345)
T ss_dssp             CBCHHHHHHHEEEEEEEEECSSCEEEEEEETT-------TCCEEEEEEEEH
T ss_pred             CchhhhhhhheeecceeeecCCeEEEEEEECC-------CCceEEEeehhh
Confidence            345555555555 5789999999999999865       268999998764

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=94.81  E-value=0.07  Score=49.89  Aligned_cols=89  Identities=20%  Similarity=0.177  Sum_probs=54.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+.+.+-...-......                      .+      
T Consensus        24 ~~~lg~G~~g~V~~~~~~~~-------~~~vaiK~~~~~~~~~~~~~~~~----------------------~~------   68 (287)
T 4f0f_A           24 EKQIGKGGFGLVHKGRLVKD-------KSVVAIKSLILGDSEGETEMIEK----------------------FQ------   68 (287)
T ss_dssp             EEECCCCSSSCEEEEEETTT-------CCEEEEEECCCCTTTCCHHHHCC----------------------SH------
T ss_pred             hhccccCCceeEEEEEEcCC-------ceEEEEEEeeccccccchhHHHH----------------------HH------
Confidence            46899999999999998752       69999999876543211111000                      00      


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccchh
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYV  423 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~~~  423 (455)
                          ++.+|+..+.++.     .+  .|++.+.-+.++..+||||++|..+.+++
T Consensus        69 ----~~~~E~~~l~~l~-----h~--~i~~~~~~~~~~~~lv~e~~~~~~L~~~l  112 (287)
T 4f0f_A           69 ----EFQREVFIMSNLN-----HP--NIVKLYGLMHNPPRMVMEFVPCGDLYHRL  112 (287)
T ss_dssp             ----HHHHHHHHHTTCC-----CT--TBCCEEEEETTTTEEEEECCTTCBHHHHH
T ss_pred             ----HHHHHHHHHHhCC-----CC--CchhhheeecCCCeEEEEecCCCCHHHHH
Confidence                1234554444331     22  23344433456667999999988876654

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=94.79  E-value=0.14  Score=49.23  Aligned_cols=93  Identities=19%  Similarity=0.224  Sum_probs=54.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|+-|+||+|+...........|+.||||+.+++..+.   +                         .+      
T Consensus        40 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~---~-------------------------~~------   85 (334)
T 2pvf_A           40 GKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEK---D-------------------------LS------   85 (334)
T ss_dssp             EEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHH---H-------------------------HH------
T ss_pred             eeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHH---H-------------------------HH------
Confidence            4789999999999999853111111346899999987653210   0                         11      


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccC--CCCCCCeEEeecccCccccchhHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY--PLVHPAVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~--~lst~rVLVmE~i~G~~i~~~~~~  425 (455)
                          ++.+|++.+.++.    +.+.  |++.+.  .-...-.+||||++|..+.+++..
T Consensus        86 ----~~~~E~~~l~~l~----~hp~--iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~  134 (334)
T 2pvf_A           86 ----DLVSEMEMMKMIG----KHKN--IINLLGACTQDGPLYVIVEYASKGNLREYLRA  134 (334)
T ss_dssp             ----HHHHHHHHHHHHC----CCTT--BCCEEEEECSSSCCEEEEECCTTCBHHHHHHT
T ss_pred             ----HHHHHHHHHHHhh----cCCC--EeeEEEEEccCCceEEEEECCCCCcHHHHHHH
Confidence                1244555555442    2222  222221  223456899999999999887653

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=94.78  E-value=0.079  Score=50.62  Aligned_cols=37  Identities=22%  Similarity=0.319  Sum_probs=28.8

Q ss_pred             ccccc-cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          284 FDGFE-EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       284 F~~fd-~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +..+. .+.|+.|+-|+||+|+.+.       .|+.||||+.++.
T Consensus        33 ~~~y~~~~~lg~G~~g~Vy~~~~~~-------~~~~vaiK~~~~~   70 (309)
T 2h34_A           33 FGPYRLRRLVGRGGMGDVYEAEDTV-------RERIVALKLMSET   70 (309)
T ss_dssp             -CCEEEEEEEEECSSSEEEEEEETT-------TTEEEEEEECGGG
T ss_pred             eccEEEEEEEcCCCCeeEEEEEEcC-------CCeEEEEEecCcc
Confidence            33343 5789999999999999865       2699999997654

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=94.78  E-value=0.074  Score=50.61  Aligned_cols=37  Identities=16%  Similarity=0.099  Sum_probs=26.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+..  .....|+.||||+.+..
T Consensus        30 ~~~lg~G~~g~Vy~~~~~~~--~~~~~~~~vaiK~~~~~   66 (322)
T 1p4o_A           30 SRELGQGSFGMVYEGVAKGV--VKDEPETRVAIKTVNEA   66 (322)
T ss_dssp             EEEEEECSSSEEEEEEEEEE--ETTEEEEEEEEEECCTT
T ss_pred             eeEeccCCceEEEeeeecCc--cCCCCceEEEEEecccc
Confidence            47899999999999987621  00112589999987643

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=94.78  E-value=0.027  Score=54.06  Aligned_cols=33  Identities=18%  Similarity=0.148  Sum_probs=27.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+.++..
T Consensus        17 ~~~lg~G~~g~V~~~~~~~~-------~~~vavK~~~~~~   49 (321)
T 2a2a_A           17 GEELGSGQFAIVKKCREKST-------GLEYAAKFIKKRQ   49 (321)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------CCEEEEEEEEBCS
T ss_pred             eeEeeecCCEEEEEEEECCC-------CeEEEEEEEeccc
Confidence            46899999999999998752       6999999987654

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=94.78  E-value=0.033  Score=52.03  Aligned_cols=31  Identities=23%  Similarity=0.313  Sum_probs=26.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|+||+|+.+.+       |+.||||+.++
T Consensus        14 ~~~lg~G~~g~V~~~~~~~~-------~~~vavK~~~~   44 (279)
T 3fdn_A           14 GRPLGKGKFGNVYLAREKQS-------KFILALKVLFK   44 (279)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------CCEEEEEEEEH
T ss_pred             eeEEecCCCeEEEEEEEccC-------CcEEEEEEEec
Confidence            47899999999999998752       68999999754

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=94.77  E-value=0.025  Score=54.89  Aligned_cols=33  Identities=18%  Similarity=0.152  Sum_probs=27.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+.+...
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~-------~~~~avK~~~~~~   48 (326)
T 2y0a_A           16 GEELGSGQFAVVKKCREKST-------GLQYAAKFIKKRR   48 (326)
T ss_dssp             EEEEECCSSEEEEEEEETTT-------CCEEEEEEEEBCC
T ss_pred             ceEEeeCCCeEEEEEEECCC-------CcEEEEEEEEccc
Confidence            46799999999999998752       6999999887653

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=94.76  E-value=0.039  Score=52.47  Aligned_cols=31  Identities=16%  Similarity=0.110  Sum_probs=26.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|+||+|+.+.+       |+.||||+..+
T Consensus        15 ~~~lG~G~~g~V~~~~~~~~-------~~~va~K~~~~   45 (310)
T 3s95_A           15 GEVLGKGCFGQAIKVTHRET-------GEVMVMKELIR   45 (310)
T ss_dssp             EEEEECCSSEEEEEEEETTT-------CCEEEEEEESC
T ss_pred             cceecCCCCEEEEEEEECCC-------CcEEEEEEecc
Confidence            57899999999999998752       69999998744

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=94.76  E-value=0.091  Score=49.74  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=26.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|+||+|+.+.       .|+.||||+.+..
T Consensus        14 ~~~lg~G~~g~V~~~~~~~-------~~~~vaiK~~~~~   45 (304)
T 2jam_A           14 MEVLGSGAFSEVFLVKQRL-------TGKLFALKCIKKS   45 (304)
T ss_dssp             EEEEEECSSEEEEEEEETT-------TCCEEEEEEEECC
T ss_pred             eeeccCCCCceEEEEEECC-------CCCEEEEEEEecc
Confidence            4789999999999999864       2699999987754

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=94.71  E-value=0.051  Score=52.88  Aligned_cols=31  Identities=16%  Similarity=0.025  Sum_probs=26.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+.+.
T Consensus        34 ~~~lG~G~~g~V~~~~~~~~-------~~~vavK~~~~   64 (336)
T 3fhr_A           34 KQVLGLGVNGKVLECFHRRT-------GQKCALKLLYD   64 (336)
T ss_dssp             EEEEEEETTEEEEEEEETTT-------CCEEEEEEEES
T ss_pred             ceeeeeCCCeEEEEEEECCC-------CCEEEEEEecC
Confidence            46899999999999998752       69999999754

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=94.69  E-value=0.057  Score=51.73  Aligned_cols=29  Identities=28%  Similarity=0.388  Sum_probs=24.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|.||+|+..         |++||||+.++
T Consensus        47 ~~~lg~G~~g~Vy~~~~~---------~~~vavK~~~~   75 (342)
T 1b6c_B           47 QESIGKGRFGEVWRGKWR---------GEEVAVKIFSS   75 (342)
T ss_dssp             EEEEEEETTEEEEEEEET---------TEEEEEEEECG
T ss_pred             EeeecCCCCcEEEEEEEc---------CccEEEEEeCc
Confidence            478999999999999873         59999999754

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=94.68  E-value=0.074  Score=51.99  Aligned_cols=31  Identities=23%  Similarity=0.230  Sum_probs=26.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+...
T Consensus        20 ~~~lG~G~~g~V~~a~~~~~-------~~~vaiK~~~~   50 (328)
T 3fe3_A           20 LKTIGKGNFAKVKLARHILT-------GREVAIKIIDK   50 (328)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------CCEEEEEEEEG
T ss_pred             EEEEeeCCCEEEEEEEECCC-------CCEEEEEEEEh
Confidence            47899999999999998642       69999999754

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=94.67  E-value=0.073  Score=51.24  Aligned_cols=30  Identities=13%  Similarity=0.245  Sum_probs=24.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.||.|+-|.||+|+.+.       .|+.||||+..
T Consensus        14 ~~~lg~G~~g~V~~~~~~~-------~~~~vavK~~~   43 (330)
T 2izr_A           14 GKKIGCGNFGELRLGKNLY-------TNEYVAIKLEP   43 (330)
T ss_dssp             EEECCC-CTTSEEEEEETT-------TTEEEEEEEEE
T ss_pred             EEEeeccCCceEEEEEECC-------CCcEEEEEEec
Confidence            4689999999999999754       26999999864

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=94.66  E-value=0.12  Score=48.27  Aligned_cols=36  Identities=17%  Similarity=0.311  Sum_probs=26.7

Q ss_pred             cccccccCcceEEEeEecccCCCC--CcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQ--KVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~--~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|.||+|+.+..  |+  ..++++||||+..+
T Consensus        13 ~~~lg~G~~g~V~~~~~~~~--~~~~~~~~~~va~K~~~~   50 (289)
T 4fvq_A           13 NESLGQGTFTKIFKGVRREV--GDYGQLHETEVLLKVLDK   50 (289)
T ss_dssp             EEEEEEETTEEEEEEEEEEE--CGGGCEEEEEEEEEEECG
T ss_pred             eeeeccCCCceEEEEEEecc--cccccccchhhhhhhccc
Confidence            46899999999999998762  21  11236899999854

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=94.66  E-value=0.044  Score=53.87  Aligned_cols=32  Identities=22%  Similarity=0.180  Sum_probs=26.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+..       |+.||||+.+..
T Consensus        58 ~~~lG~G~~g~Vy~~~~~~~-------~~~vavK~~~~~   89 (349)
T 2w4o_A           58 ESELGRGATSIVYRCKQKGT-------QKPYALKVLKKT   89 (349)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------CCEEEEEEEEC-
T ss_pred             eeEEeeCCCEEEEEEEECCC-------CcEEEEEEeccc
Confidence            47899999999999998752       689999998753

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=94.64  E-value=0.051  Score=51.48  Aligned_cols=32  Identities=22%  Similarity=0.171  Sum_probs=26.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+....
T Consensus         8 ~~~lg~G~~g~V~~~~~~~~-------~~~vavK~~~~~   39 (311)
T 4agu_A            8 IGKIGEGSYGVVFKCRNRDT-------GQIVAIKKFLES   39 (311)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------CCEEEEEEECCC
T ss_pred             eeEEeecCCeEEEEEEeCCC-------CcEEEEEEeecc
Confidence            46799999999999998752       699999987544

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=94.64  E-value=0.058  Score=50.53  Aligned_cols=30  Identities=17%  Similarity=0.230  Sum_probs=25.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.||.|+-|+||+|+-..       .|+.||||+.+
T Consensus        15 ~~~lg~G~~g~V~~~~~~~-------~~~~vavK~~~   44 (298)
T 1csn_A           15 GRRIGEGSFGVIFEGTNLL-------NNQQVAIKFEP   44 (298)
T ss_dssp             EEEEEECSSCEEEEEEETT-------TTEEEEEEEEE
T ss_pred             EEEEeecCCEEEEEEEECC-------CCcEEEEEEec
Confidence            4689999999999999754       26999999864

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=94.63  E-value=0.097  Score=49.23  Aligned_cols=36  Identities=22%  Similarity=0.343  Sum_probs=26.7

Q ss_pred             cccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          287 FEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       287 fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.++.||.|+-|.||+|+....     ..|+.||||+.++.
T Consensus        20 ~~~~~lg~G~~g~Vy~~~~~~~-----~~~~~vavK~~~~~   55 (291)
T 1xbb_A           20 LEDKELGSGNFGTVKKGYYQMK-----KVVKTVAVKILKNE   55 (291)
T ss_dssp             EEEEEEEECSSEEEEEEEEECS-----SSEEEEEEEEEC--
T ss_pred             hccCccccccCeeeEeeeecCC-----CceeeEEEEeeccc
Confidence            3445999999999999976542     12689999998764

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=94.60  E-value=0.092  Score=51.86  Aligned_cols=32  Identities=22%  Similarity=0.230  Sum_probs=26.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+-+.+       |+.||||+.+.+
T Consensus        25 ~~~lG~G~~g~V~~~~~~~~-------~~~vavK~~~~~   56 (361)
T 3uc3_A           25 VKDIGSGNFGVARLMRDKLT-------KELVAVKYIERG   56 (361)
T ss_dssp             EEEESSSTTSSEEEEEETTT-------CCEEEEEEEESS
T ss_pred             EEEeccCCCEEEEEEEECCC-------CcEEEEEEEecC
Confidence            46899999999999998752       699999998654

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=94.58  E-value=0.053  Score=53.05  Aligned_cols=29  Identities=17%  Similarity=0.132  Sum_probs=23.1

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      +.||.|+-|+||+|+-+.+       |+.||||+.+
T Consensus        11 ~~lG~G~fg~V~~a~~~~~-------~~~vAiK~i~   39 (299)
T 4g31_A           11 QCLGRGGFGVVFEAKNKVD-------DCNYAIKRIR   39 (299)
T ss_dssp             EEEEECC--EEEEEEETTT-------CCEEEEEEEE
T ss_pred             eEEecCCCeEEEEEEECCC-------CCEEEEEEEe
Confidence            6899999999999998752       6999999864

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=94.58  E-value=0.093  Score=49.50  Aligned_cols=38  Identities=18%  Similarity=0.184  Sum_probs=28.1

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.||.|+-|.||+|+....  +....|+.||||+.+++.
T Consensus        28 ~~~lg~G~~g~V~~~~~~~~--~~~~~~~~vavK~~~~~~   65 (314)
T 2ivs_A           28 GKTLGEGEFGKVVKATAFHL--KGRAGYTTVAVKMLKENA   65 (314)
T ss_dssp             EEEEEECSSSEEEEEEEETG--GGCSSEEEEEEEECCTTC
T ss_pred             eeeecccCCeeEEEEEEecc--CcccCcceEEEEeccCCC
Confidence            37899999999999987431  111236899999987653

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=94.56  E-value=0.051  Score=53.83  Aligned_cols=35  Identities=26%  Similarity=0.201  Sum_probs=21.0

Q ss_pred             cccc-cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          285 DGFE-EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       285 ~~fd-~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      ..++ .+.||.|+-|.||+|+.+.+       |+.||||+.+.
T Consensus         9 ~~y~~~~~lG~G~~g~V~~~~~~~~-------~~~vaiK~i~~   44 (388)
T 3oz6_A            9 RKYELVKKLGKGAYGIVWKSIDRRT-------GEVVAVKKIFD   44 (388)
T ss_dssp             TTEEEEEC-------CEEEEEETTT-------CCEEEEEEECC
T ss_pred             CceEEEEEeeeCCCeEEEEEEECCC-------CCEEEEEEecc
Confidence            3344 47899999999999998652       69999998754

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=94.49  E-value=0.073  Score=51.28  Aligned_cols=32  Identities=22%  Similarity=0.122  Sum_probs=26.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+..+.
T Consensus        30 ~~~lg~G~~g~V~~~~~~~~-------~~~vavK~~~~~   61 (331)
T 4aaa_A           30 LGLVGEGSYGMVMKCRNKDT-------GRIVAIKKFLES   61 (331)
T ss_dssp             EEEGGGGTTSSEEEEEETTT-------CCEEEEEEEESC
T ss_pred             eeEEeecCCEEEEEEEECCC-------CceEEEEEEecC
Confidence            47999999999999998752       699999987544

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=94.45  E-value=0.12  Score=49.33  Aligned_cols=29  Identities=31%  Similarity=0.214  Sum_probs=24.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|.||+|+..         |+.||||+..+
T Consensus        18 ~~~lg~G~~g~Vy~~~~~---------~~~vavK~~~~   46 (336)
T 3g2f_A           18 LELIGRGRYGAVYKGSLD---------ERPVAVKVFSF   46 (336)
T ss_dssp             EEEEEECSSEEEEEEEET---------TEEEEEEEEEG
T ss_pred             eeecccCCCeEEEEEEEC---------CeEEEEEEeec
Confidence            478999999999999773         59999999754

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=94.43  E-value=0.093  Score=48.92  Aligned_cols=90  Identities=21%  Similarity=0.274  Sum_probs=46.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.|+.|+.|+||+|+.... +|   ++..||||+.+++....                          .+..+      
T Consensus        23 ~~~lg~G~~g~Vy~~~~~~~-~~---~~~~vavK~~~~~~~~~--------------------------~~~~~------   66 (291)
T 1u46_A           23 LEKLGDGSFGVVRRGEWDAP-SG---KTVSVAVKCLKPDVLSQ--------------------------PEAMD------   66 (291)
T ss_dssp             EEECC----CCCEEEEEECT-TS---CEEEEEEEC----------------------------------CHHHH------
T ss_pred             eeeecCCCceeEEEEEeccC-CC---ceeEEEEEEEccCccCC--------------------------HHHHH------
Confidence            46899999999999997541 12   24579999987653110                          01111      


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCC-CCCCCeEEeecccCccccchhHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP-LVHPAVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~-lst~rVLVmE~i~G~~i~~~~~~  425 (455)
                          ++.+|.+.+.++    + .++  +++.+.- ......++|||++|..+.+++..
T Consensus        67 ----~~~~e~~~l~~l----~-h~~--i~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~  113 (291)
T 1u46_A           67 ----DFIREVNAMHSL----D-HRN--LIRLYGVVLTPPMKMVTELAPLGSLLDRLRK  113 (291)
T ss_dssp             ----HHHHHHHHHHHC----C-CTT--BCCEEEEECSSSCEEEEECCTTCBHHHHHHH
T ss_pred             ----HHHHHHHHHHhC----C-CCC--cccEEEEEccCCceeeEecccCCCHHHHHHh
Confidence                234555555544    1 222  2222211 23446799999999988877643

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=94.43  E-value=0.074  Score=54.17  Aligned_cols=31  Identities=16%  Similarity=0.170  Sum_probs=26.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+.+.
T Consensus        74 ~~~LG~G~fG~V~~~~~~~~-------~~~~AiK~~~k  104 (410)
T 3v8s_A           74 VKVIGRGAFGEVQLVRHKST-------RKVYAMKLLSK  104 (410)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------CCEEEEEEEEH
T ss_pred             EEEEEcCCCEEEEEEEECCC-------CcEEEEEEEeh
Confidence            47899999999999999762       68999998753

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=94.41  E-value=0.072  Score=52.23  Aligned_cols=38  Identities=16%  Similarity=0.143  Sum_probs=28.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.||.|+-|.||+|+.+.+  +....|+.||||+.+.+-
T Consensus        40 ~~~lG~G~~g~Vy~~~~~~~--~~~~~~~~vavK~~~~~~   77 (364)
T 3op5_A           40 GLPIGQGGFGCIYLADMNSS--ESVGSDAPCVVKVEPSDN   77 (364)
T ss_dssp             EEECCCC-CCEEEEEEECCS--SCCCTTCSEEEEEEETTC
T ss_pred             EEEEecCCCeEEEEeeecCc--cccccccceEEEEeeccc
Confidence            57899999999999998752  222346899999987763

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=94.41  E-value=0.048  Score=50.09  Aligned_cols=30  Identities=10%  Similarity=0.067  Sum_probs=26.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+         |+.||||+.+..
T Consensus        15 ~~~lg~G~~g~V~~~~~~---------~~~~avK~~~~~   44 (271)
T 3kmu_A           15 LTKLNENHSGELWKGRWQ---------GNDIVVKVLKVR   44 (271)
T ss_dssp             EEEEEEETTEEEEEEEET---------TEEEEEEEECCT
T ss_pred             HHHhcCCCcceEEEEEEC---------CeeEEEEEeccc
Confidence            578999999999999984         589999998764

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=94.41  E-value=0.1  Score=49.60  Aligned_cols=33  Identities=21%  Similarity=0.117  Sum_probs=26.8

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|+||+|+....      +|+.||||+.++.
T Consensus        16 ~~~lg~G~~g~V~~~~~~~~------~~~~vavK~~~~~   48 (326)
T 1blx_A           16 VAEIGEGAYGKVFKARDLKN------GGRFVALKRVRVQ   48 (326)
T ss_dssp             EEEEEEETTEEEEEEEETTT------TTEEEEEEEEEEE
T ss_pred             eeeecccccEEEEEEEecCC------CCEEEEEEEeccC
Confidence            47899999999999998421      2699999988754

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=94.40  E-value=0.091  Score=51.61  Aligned_cols=35  Identities=14%  Similarity=0.042  Sum_probs=27.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|+||+|+....    ...|+.||||+.++.
T Consensus        59 ~~~lG~G~~g~Vy~~~~~~~----~~~~~~vavK~~~~~   93 (355)
T 1vzo_A           59 LKVLGTGAYGKVFLVRKISG----HDTGKLYAMKVLKKA   93 (355)
T ss_dssp             EEEEEETTTEEEEEEEECSS----TTTTCEEEEEEESEE
T ss_pred             EEEeccCCCEEEEEEEEccc----CCCCeEEEEEEEeHH
Confidence            47799999999999998531    123799999998754

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=94.39  E-value=0.2  Score=46.93  Aligned_cols=36  Identities=19%  Similarity=0.134  Sum_probs=26.8

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+....   ....|+.||||+.++.
T Consensus        26 ~~~lg~G~~g~V~~~~~~~~---~~~~~~~vavK~~~~~   61 (302)
T 4e5w_A           26 IRDLGEGHFGKVELCRYDPE---GDNTGEQVAVKSLKPE   61 (302)
T ss_dssp             EEEEEECSSEEEEEEEECTT---SSSCSEEEEEEEEC--
T ss_pred             hhccCCCCceEEEEEEEccc---cCccCeEEEEEEeccc
Confidence            36899999999999996421   1234799999998865

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=94.38  E-value=0.14  Score=48.15  Aligned_cols=36  Identities=22%  Similarity=0.129  Sum_probs=27.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+..   +...|+.||||+.++.
T Consensus        15 ~~~lg~G~~g~V~~~~~~~~---~~~~~~~vavK~~~~~   50 (295)
T 3ugc_A           15 LQQLGKGNFGSVEMCRYDPL---QDNTGEVVAVKKLQHS   50 (295)
T ss_dssp             EEEEEECSSEEEEEEEECTT---CSSCCEEEEEEEESCC
T ss_pred             hheeeccCCEEEEEEEEecc---cCCCCcEEEEEEcccC
Confidence            36899999999999997421   1224799999988654

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=94.38  E-value=0.077  Score=51.41  Aligned_cols=31  Identities=26%  Similarity=0.254  Sum_probs=26.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+.|.||+|+.+.+       |+.||||+...
T Consensus        12 ~~~lG~G~~g~V~~~~~~~~-------~~~vavK~~~~   42 (323)
T 3tki_A           12 VQTLGEGAYGEVQLAVNRVT-------EEAVAVKIVDM   42 (323)
T ss_dssp             EEEEEEETTEEEEEEEETTT-------CCEEEEEEEEC
T ss_pred             eeEEecCCCEEEEEEEECCC-------CcEEEEEEEEc
Confidence            47899999999999998752       69999998753

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=94.35  E-value=0.069  Score=52.55  Aligned_cols=32  Identities=19%  Similarity=0.239  Sum_probs=27.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+....
T Consensus        27 ~~~lG~G~~g~V~~~~~~~~-------~~~~avK~~~~~   58 (342)
T 2qr7_A           27 KEDIGVGSYSVCKRCIHKAT-------NMEFAVKIIDKS   58 (342)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------TEEEEEEEEETT
T ss_pred             EEEEeeCCCEEEEEEEECCC-------CCEEEEEEEEcc
Confidence            36899999999999998752       699999998654

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=94.35  E-value=0.17  Score=50.03  Aligned_cols=31  Identities=26%  Similarity=0.186  Sum_probs=26.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+.+.
T Consensus        28 ~~~lG~G~fg~V~~~~~~~~-------~~~~AvK~~~~   58 (353)
T 3txo_A           28 IRVLGKGSFGKVMLARVKET-------GDLYAVKVLKK   58 (353)
T ss_dssp             EEEEEEETTEEEEEEEETTT-------CCEEEEEEEEH
T ss_pred             EEEEeeCCCEEEEEEEEcCC-------CCEEEEEEEEH
Confidence            47899999999999998752       69999999764

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=94.34  E-value=0.1  Score=48.68  Aligned_cols=29  Identities=21%  Similarity=0.171  Sum_probs=24.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEee
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVR  324 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVq  324 (455)
                      .+.||.|+-|.||+|+-+.       .|+.||||+.
T Consensus        14 ~~~lg~G~~g~V~~~~~~~-------~~~~vavK~~   42 (296)
T 4hgt_A           14 GRKIGSGSFGDIYLGTDIA-------AGEEVAIKLE   42 (296)
T ss_dssp             EEEEEECSSSEEEEEEETT-------TTEEEEEEEE
T ss_pred             eeeecCCCCeEEEEEEEcC-------CCceEEEEee
Confidence            4789999999999999754       2699999973

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=94.30  E-value=0.063  Score=53.13  Aligned_cols=31  Identities=29%  Similarity=0.335  Sum_probs=26.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|+||+|+.+.+       |+.||||+.+.
T Consensus        59 ~~~lG~G~~g~V~~~~~~~~-------~~~vaiK~~~~   89 (382)
T 2vx3_A           59 DSLIGKGSFGQVVKAYDRVE-------QEWVAIKIIKN   89 (382)
T ss_dssp             EEEEEEETTEEEEEEEETTT-------TEEEEEEEECS
T ss_pred             EEEEeecCCEEEEEEEEcCC-------CcEEEEEEEec
Confidence            36899999999999998752       69999999864

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=94.24  E-value=0.15  Score=50.49  Aligned_cols=31  Identities=19%  Similarity=0.224  Sum_probs=26.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+.+.
T Consensus        22 ~~~lG~G~fg~V~~~~~~~~-------~~~vaiK~~~~   52 (345)
T 1xjd_A           22 HKMLGKGSFGKVFLAEFKKT-------NQFFAIKALKK   52 (345)
T ss_dssp             EEEEEECSSSEEEEEEETTT-------TEEEEEEEEEH
T ss_pred             EEEEeeCCCeEEEEEEECCC-------CCEEEEEEEEh
Confidence            47899999999999999752       69999999864

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=94.20  E-value=0.065  Score=52.96  Aligned_cols=32  Identities=16%  Similarity=0.113  Sum_probs=27.0

Q ss_pred             ccccccc--CcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASG--SIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASA--SIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|  +.|.||+|+.+.+       |+.||||+.+..
T Consensus        30 ~~~lG~G~~~~g~V~~~~~~~~-------~~~vavK~~~~~   63 (389)
T 3gni_B           30 LTVIGKGFEDLMTVNLARYKPT-------GEYVTVRRINLE   63 (389)
T ss_dssp             EEEEEEETTTTEEEEEEEETTT-------CCEEEEEEEEGG
T ss_pred             EecccCCcCCceEEEEEEEcCC-------CCEEEEEEeccc
Confidence            4689999  9999999998752       699999998653

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=94.19  E-value=0.086  Score=53.78  Aligned_cols=30  Identities=23%  Similarity=0.236  Sum_probs=25.8

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      +.||.|+-|+||+|+-+.+       |+.||||+.+.
T Consensus        60 ~~lG~G~fG~V~~a~~~~t-------~~~vAiK~i~~   89 (398)
T 4b99_A           60 ETIGNGAYGVVSSARRRLT-------GQQVAIKKIPN   89 (398)
T ss_dssp             EEEEECSSCEEEEEEETTT-------CCEEEEEEETT
T ss_pred             EEEecccCeEEEEEEECCC-------CCEEEEEEECc
Confidence            6899999999999998752       69999998753

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=94.16  E-value=0.077  Score=50.36  Aligned_cols=94  Identities=15%  Similarity=0.015  Sum_probs=55.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|+-|.||+|+.+.       .|+.||||+.+.+-....                                 ...
T Consensus        36 ~~~lg~G~~g~Vy~~~~~~-------~~~~vavK~~~~~~~~~~---------------------------------~~~   75 (312)
T 2iwi_A           36 GPLLGKGGFGTVFAGHRLT-------DRLQVAIKVIPRNRVLGW---------------------------------SPL   75 (312)
T ss_dssp             EEEEEEETTEEEEEEECTT-------TCCEEEEEECCSTTTC--------------------------------------
T ss_pred             eeEEEcCCCEEEEEEEEcc-------CCeEEEEEEEeccccccc---------------------------------ccc
Confidence            4789999999999998765       268999999875421100                                 001


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccC--CCCCCCeEEeec-ccCccccchhHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY--PLVHPAVLVETY-EQGECVSRYVDE  425 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~--~lst~rVLVmE~-i~G~~i~~~~~~  425 (455)
                      ..+..+.+|.+.+.++....+. ++  |++.+.  .......++||| ++|..+.+++..
T Consensus        76 ~~~~~~~~e~~~l~~l~~~~~h-~~--i~~~~~~~~~~~~~~~v~e~~~~~~~L~~~l~~  132 (312)
T 2iwi_A           76 SDSVTCPLEVALLWKVGAGGGH-PG--VIRLLDWFETQEGFMLVLERPLPAQDLFDYITE  132 (312)
T ss_dssp             ---CCCCHHHHHHHHHHSSCCC-SS--BCCEEEEC-----CEEEEECCSSEEEHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhhcccCCC-CC--eeeEEEEEecCCeEEEEEEecCCCCCHHHHHHh
Confidence            1234556677767666433222 22  223221  223456899999 899998887653

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=94.15  E-value=0.068  Score=53.31  Aligned_cols=33  Identities=27%  Similarity=0.255  Sum_probs=25.3

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      +.||.|+-|+||+|+..+. +|   ++..||||+.+.
T Consensus        95 ~~LG~G~fg~Vy~~~~~~~-~~---~~~~vavK~~~~  127 (373)
T 3c1x_A           95 EVIGRGHFGCVYHGTLLDN-DG---KKIHCAVKSLNR  127 (373)
T ss_dssp             EEEECCSSSEEEEEEEEET-TT---EEEEEEEEECCS
T ss_pred             cEeeeCCCeEEEEEEEECC-CC---cEEEEEEEEcCC
Confidence            6799999999999998752 11   236789998764

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=94.13  E-value=0.16  Score=49.66  Aligned_cols=32  Identities=22%  Similarity=0.186  Sum_probs=26.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+-+.       .|+.||||+..+.
T Consensus        32 ~~~lG~G~~g~V~~~~~~~-------~~~~vaiK~~~~~   63 (364)
T 3qyz_A           32 LSYIGEGAYGMVCSAYDNL-------NKVRVAIKKISPF   63 (364)
T ss_dssp             EEEEEECSSEEEEEEEETT-------TTEEEEEEEECCT
T ss_pred             EEEeecCCCeEEEEEEECC-------CCeEEEEEEeccc
Confidence            4789999999999998764       2699999988763

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=94.10  E-value=0.13  Score=49.53  Aligned_cols=32  Identities=22%  Similarity=0.217  Sum_probs=27.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+.++.
T Consensus        16 ~~~lg~G~~g~V~~~~~~~~-------~~~vaiK~~~~~   47 (353)
T 2b9h_A           16 KSLLGEGAYGVVCSATHKPT-------GEIVAIKKIEPF   47 (353)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------TEEEEEEEECCC
T ss_pred             eeEEcCCCCeEEEEEEECCC-------CcEEEEEeeccc
Confidence            47899999999999998752       699999998764

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=94.08  E-value=0.13  Score=47.79  Aligned_cols=32  Identities=16%  Similarity=0.252  Sum_probs=26.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+.++.
T Consensus        11 ~~~lg~G~~g~V~~~~~~~~-------~~~vavK~~~~~   42 (284)
T 3kk8_A           11 KEELGKGAFSVVRRCVHKTT-------GLEFAAKIINTK   42 (284)
T ss_dssp             EEEEEEETTEEEEEEEETTT-------CCEEEEEEEEGG
T ss_pred             hhhhcCcCCeEEEEEEEcCC-------CceEEEEEeecc
Confidence            46799999999999998752       699999997654

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=94.06  E-value=0.22  Score=47.55  Aligned_cols=31  Identities=23%  Similarity=0.231  Sum_probs=26.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|+||+|+.+.+       |+.||||+.+.
T Consensus        14 ~~~lg~G~~g~V~~~~~~~~-------~~~vavK~~~~   44 (319)
T 4euu_A           14 SDILGQGATANVFRGRHKKT-------GDLFAIKVFNN   44 (319)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------CCEEEEEEECG
T ss_pred             EEEecCCCCeEEEEEEECCC-------CcEEEEEEecc
Confidence            36799999999999998752       68999999764

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=94.05  E-value=0.19  Score=47.18  Aligned_cols=34  Identities=24%  Similarity=0.168  Sum_probs=24.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|+||+|+..++  +  ..+..||||+.+.
T Consensus        30 ~~~lg~G~~g~Vy~~~~~~~--~--~~~~~~avk~~~~   63 (298)
T 3f66_A           30 NEVIGRGHFGCVYHGTLLDN--D--GKKIHCAVKSLNR   63 (298)
T ss_dssp             EEEEEEETTEEEEEEEEC---------CEEEEEEEETT
T ss_pred             cceeeecCCceEEEEEEecC--C--CceeEEEEEeccc
Confidence            47899999999999998642  1  1245789998764

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=94.05  E-value=0.073  Score=49.95  Aligned_cols=32  Identities=22%  Similarity=0.205  Sum_probs=25.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|+||+|+.+.+       |+.||||+.+.+
T Consensus         8 ~~~lg~G~~g~V~~~~~~~~-------~~~vavK~~~~~   39 (299)
T 2r3i_A            8 VEKIGEGTYGVVYKARNKLT-------GEVVALKKIRLD   39 (299)
T ss_dssp             EEEEEECSSSEEEEEEETTT-------CCEEEEEEC---
T ss_pred             hhhhccCCCeeEEEEEEcCC-------CceEEEEEeecC
Confidence            46899999999999998752       699999987654

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=94.03  E-value=0.077  Score=49.82  Aligned_cols=32  Identities=25%  Similarity=0.240  Sum_probs=26.8

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.|+.|+.|+||+|+.+.+       |+.||||+..+.
T Consensus        27 ~~~lg~G~~g~V~~~~~~~~-------~~~valK~~~~~   58 (287)
T 2wei_A           27 VCMLGKGSFGEVLKCKDRIT-------QQEYAVKVINKA   58 (287)
T ss_dssp             EEEEEEETTEEEEEEEETTT-------CCEEEEEEEEGG
T ss_pred             eEEEcCCCCEEEEEEEEcCC-------CcEEEEEEeccc
Confidence            46899999999999998642       689999997654

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=94.03  E-value=0.1  Score=49.81  Aligned_cols=80  Identities=24%  Similarity=0.261  Sum_probs=52.1

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|+-|.||+|+.+         |+.||||+.+..-.                               .+      
T Consensus        13 ~~~lg~G~~g~V~~~~~~---------~~~vavK~~~~~~~-------------------------------~~------   46 (307)
T 2eva_A           13 EEVVGRGAFGVVCKAKWR---------AKDVAIKQIESESE-------------------------------RK------   46 (307)
T ss_dssp             EEEEECCSSSEEEEEEET---------TEEEEEEECSSTTH-------------------------------HH------
T ss_pred             eeEeecCCCceEEEEEEC---------CeeEEEEEecChhH-------------------------------HH------
Confidence            478999999999999874         48999998743210                               00      


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccchhHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~  425 (455)
                          +|.+|.+.+.++.     .++  |.+.+.-...+-.|||||++|..+.+++..
T Consensus        47 ----~~~~E~~~l~~l~-----hp~--iv~~~~~~~~~~~lv~e~~~~~~L~~~l~~   92 (307)
T 2eva_A           47 ----AFIVELRQLSRVN-----HPN--IVKLYGACLNPVCLVMEYAEGGSLYNVLHG   92 (307)
T ss_dssp             ----HHHHHHHHHHHCC-----CTT--BCCEEEBCTTTTEEEEECCTTCBHHHHHHC
T ss_pred             ----HHHHHHHHHhcCC-----CCC--cCeEEEEEcCCcEEEEEcCCCCCHHHHHhc
Confidence                1244555554431     222  233343334567899999999999887643

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=94.02  E-value=0.088  Score=49.17  Aligned_cols=32  Identities=13%  Similarity=0.061  Sum_probs=26.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      ...||.|+-|+||+|+.+.       .|+.||||+.+..
T Consensus        27 ~~~lg~G~~g~Vy~~~~~~-------~~~~vaiK~~~~~   58 (295)
T 2clq_A           27 RVVLGKGTYGIVYAGRDLS-------NQVRIAIKEIPER   58 (295)
T ss_dssp             BCEEEECSSSEEEEEEETT-------TCCEEEEEEEECC
T ss_pred             cEEEeecCcEEEEEEEECC-------CCeEEEEEEccCC
Confidence            3579999999999999765       2689999987643

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=94.02  E-value=0.094  Score=52.02  Aligned_cols=31  Identities=19%  Similarity=0.135  Sum_probs=26.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|+||+|+.+.+       |+.||||+.+.
T Consensus        25 ~~~lG~G~fg~V~~~~~~~~-------~~~~AiK~~~~   55 (353)
T 2i0e_A           25 LMVLGKGSFGKVMLSERKGT-------DELYAVKILKK   55 (353)
T ss_dssp             EEEEEEETTEEEEEEEETTE-------EEEEEEEEEEH
T ss_pred             EEEEeeCCCEEEEEEEECCC-------CCEEEEEEEEH
Confidence            47899999999999998752       68999999764

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=93.95  E-value=0.082  Score=49.54  Aligned_cols=30  Identities=30%  Similarity=0.244  Sum_probs=25.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+..         |+.||||+..+.
T Consensus        13 ~~~lg~G~~g~V~~~~~~---------~~~vavK~~~~~   42 (301)
T 3q4u_A           13 LECVGKGRYGEVWRGSWQ---------GENVAVKIFSSR   42 (301)
T ss_dssp             EEEEEECSSEEEEEEEET---------TEEEEEEEECGG
T ss_pred             EEeeccCCCcEEEEEEEC---------CEEEEEEEeccc
Confidence            468999999999999873         589999997653

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=93.95  E-value=0.2  Score=49.23  Aligned_cols=32  Identities=25%  Similarity=0.203  Sum_probs=27.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+.+..
T Consensus        14 ~~~lG~G~fg~V~~~~~~~~-------~~~~aiK~~~~~   45 (345)
T 3a8x_A           14 LRVIGRGSYAKVLLVRLKKT-------DRIYAMKVVKKE   45 (345)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------TEEEEEEEEEGG
T ss_pred             EEEEEecCCeEEEEEEECCC-------CCEEEEEEEEhH
Confidence            47899999999999999752       699999998754

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=93.90  E-value=0.055  Score=54.44  Aligned_cols=37  Identities=16%  Similarity=0.161  Sum_probs=28.8

Q ss_pred             hhccccc--cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          282 EIFDGFE--EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       282 eiF~~fd--~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      +++.+++  .+.||.|+-|.||+|+.+.+       |+.||||+.+
T Consensus        58 ~~~~~y~~~~~~LG~G~~g~V~~~~~~~~-------~~~vAiK~~~   96 (400)
T 1nxk_A           58 AIIDDYKVTSQVLGLGINGKVLQIFNKRT-------QEKFALKMLQ   96 (400)
T ss_dssp             CGGGTEEEEEEEEEEETTEEEEEEEETTT-------CCEEEEEEEE
T ss_pred             cccccceeccceeeeccCeEEEEEEECCC-------CCEEEEEEeC
Confidence            3444444  36899999999999998752       6999999975

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=93.86  E-value=0.26  Score=48.91  Aligned_cols=32  Identities=31%  Similarity=0.194  Sum_probs=22.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .++||.|+-|+||+|+-+.       .|+.||||+....
T Consensus        34 ~~~lG~G~~g~V~~a~~~~-------~~~~vaiK~~~~~   65 (367)
T 2fst_X           34 LSPVGSGAYGSVCAAFDTK-------TGLRVAVKKLSRP   65 (367)
T ss_dssp             EEECC----CCEEEEEETT-------TTEEEEEEECSST
T ss_pred             eeEEeecCCeEEEEEEECC-------CCCEEEEEEeCcc
Confidence            4789999999999998764       2699999988654

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=93.84  E-value=0.13  Score=51.20  Aligned_cols=31  Identities=23%  Similarity=0.231  Sum_probs=26.1

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+.+.
T Consensus        14 ~~~LG~G~~g~Vy~~~~~~~-------~~~vaiK~~~~   44 (396)
T 4eut_A           14 SDILGQGATANVFRGRHKKT-------GDLFAIKVFNN   44 (396)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------CCEEEEEEECG
T ss_pred             EEEEEcCCCeEEEEEEECCC-------CcEEEEEEecc
Confidence            35799999999999998752       69999999753

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=93.80  E-value=0.3  Score=46.13  Aligned_cols=32  Identities=19%  Similarity=0.118  Sum_probs=25.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|.||+|+...      ..|+.||||+.+.
T Consensus        19 ~~~lg~G~~g~V~~~~~~~------~~~~~vavK~~~~   50 (339)
T 1z57_A           19 VDTLGEGAFGKVVECIDHK------AGGRHVAVKIVKN   50 (339)
T ss_dssp             EEEEEEETTEEEEEEEETT------TTTEEEEEEEECS
T ss_pred             EEEEecCCCeEEEEEEecC------CCCcEEEEEEEec
Confidence            4679999999999998732      1269999999763

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=93.69  E-value=0.097  Score=48.70  Aligned_cols=81  Identities=19%  Similarity=0.072  Sum_probs=53.1

Q ss_pred             cccccccc-CcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHH
Q 012848          288 EEAPVASG-SIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAV  366 (455)
Q Consensus       288 d~~PiASA-SIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~  366 (455)
                      +-++++.| |=+.|||-..+.   |    |+.++||+..|+...                                    
T Consensus        28 ~~~~~~~G~S~~~v~rl~~~~---~----~~~~~lk~~~~~~~~------------------------------------   64 (272)
T 4gkh_A           28 RWARDNVGQSGATIYRLYGKP---N----APELFLKHGKGSVAN------------------------------------   64 (272)
T ss_dssp             EEEEEECSSSSCEEEEEECCT---T----CCCEEEEEEETHHHH------------------------------------
T ss_pred             eEEEccCCCcCCeEEEEEecC---C----CeEEEEEECCCCCHh------------------------------------
Confidence            33455554 445799877654   2    688999998876210                                    


Q ss_pred             HHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCC--CCCCCeEEeecccCccccchh
Q 012848          367 FMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP--LVHPAVLVETYEQGECVSRYV  423 (455)
Q Consensus       367 ~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~--lst~rVLVmE~i~G~~i~~~~  423 (455)
                            |+..|++.++...      ..|.||+|+.-  -.....|+|||++|.++.+..
T Consensus        65 ------~~~~E~~~l~~l~------~~vPVP~v~~~~~~~~~~~lvme~l~G~~~~~~~  111 (272)
T 4gkh_A           65 ------DVTDEMVRLNWLT------AFMPLPTIKHFIRTPDDAWLLTTAIPGKTAFQVL  111 (272)
T ss_dssp             ------HHHHHHHHHHHHT------TTSCCCCEEEEEEETTEEEEEEECCCSEEHHHHH
T ss_pred             ------HHHHHHHHHHHhc------cCCCcCeEEEEEEECCeEEEEEEeeCCccccccc
Confidence                  2356666666543      24678998742  124458999999999887653

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=93.68  E-value=0.09  Score=51.15  Aligned_cols=31  Identities=26%  Similarity=0.254  Sum_probs=26.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+.+.
T Consensus        11 ~~~lG~G~~g~V~~~~~~~~-------~~~~aiK~~~~   41 (318)
T 1fot_A           11 LRTLGTGSFGRVHLIRSRHN-------GRYYAMKVLKK   41 (318)
T ss_dssp             EEEEEECSSCEEEEEEETTT-------CCEEEEEEEEH
T ss_pred             EEEEeeCCCEEEEEEEECCC-------CCEEEEEEEEH
Confidence            46899999999999998752       69999999764

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=93.67  E-value=0.072  Score=51.68  Aligned_cols=31  Identities=16%  Similarity=0.122  Sum_probs=26.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||+|+...
T Consensus        10 ~~~lG~G~~g~Vy~~~~~~~-------~~~~a~K~~~~   40 (321)
T 1tki_A           10 AEDLGRGEFGIVHRCVETSS-------KKTYMAKFVKV   40 (321)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------TEEEEEEEECC
T ss_pred             eeEEecCCCeEEEEEEECCC-------CcEEEEEEEec
Confidence            46799999999999998752       69999998763

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=93.64  E-value=0.14  Score=54.76  Aligned_cols=34  Identities=32%  Similarity=0.481  Sum_probs=27.4

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      ..||.|+-|+||+|+.+..     .+|..||||+.+++.
T Consensus       342 ~~LG~G~fG~Vy~~~~~~~-----~~~~~vAvK~~~~~~  375 (613)
T 2ozo_A          342 IELGCGNFGSVRQGVYRMR-----KKQIDVAIKVLKQGT  375 (613)
T ss_dssp             EEEEECSSSEEEEEEEECS-----SCEEEEEEEECCCCC
T ss_pred             cEEecCCCcEEEEEEEecC-----CCcEEEEEEEcCCCC
Confidence            3699999999999998742     125889999998764

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=93.60  E-value=0.11  Score=48.60  Aligned_cols=31  Identities=23%  Similarity=0.322  Sum_probs=26.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+.|.||+|+.+.       .|+.||||+.++
T Consensus        19 ~~~lg~G~~g~Vy~~~~~~-------~~~~vaiK~~~~   49 (284)
T 2vgo_A           19 GRPLGKGKFGNVYLAREKQ-------NKFIMALKVLFK   49 (284)
T ss_dssp             EEEEEECSSEEEEEEEETT-------TTEEEEEEEEEH
T ss_pred             eheecCCCCeEEEEEEEcC-------CCcEEEEEEEcc
Confidence            5789999999999999865       268999998764

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=93.59  E-value=0.19  Score=47.17  Aligned_cols=32  Identities=19%  Similarity=0.042  Sum_probs=26.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|+||+|+.++.       |+.||+|+....
T Consensus        20 ~~~lg~G~~g~Vy~~~~~~~-------~~~~a~K~~~~~   51 (294)
T 2rku_A           20 GRFLGKGGFAKCFEISDADT-------KEVFAGKIVPKS   51 (294)
T ss_dssp             EEEEEEETTEEEEEEEETTT-------CCEEEEEEEEGG
T ss_pred             EEEEeecCCEEEEEEEECCC-------CceEEEEEechh
Confidence            47899999999999998752       689999987654

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=93.59  E-value=0.057  Score=50.35  Aligned_cols=30  Identities=23%  Similarity=0.207  Sum_probs=25.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.+|.|+-|+||+|+.+.       +|+.||||+.+
T Consensus        11 ~~~lg~G~~g~V~~~~~~~-------~~~~vaiK~~~   40 (303)
T 1zy4_A           11 IAVLGQGAFGQVVKARNAL-------DSRYYAIKKIR   40 (303)
T ss_dssp             EEEEEECSSEEEEEEEETT-------TCCEEEEEEEE
T ss_pred             hheeccCCcEEEEEEEEcC-------CCeEEEEEEEe
Confidence            4689999999999999864       26999999874

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=93.57  E-value=0.2  Score=53.76  Aligned_cols=29  Identities=17%  Similarity=0.178  Sum_probs=25.5

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      +.||.|+-|+||+|+.+.+       |+.||||+.+
T Consensus       190 ~~LG~G~fG~Vy~a~~~~t-------g~~vAvK~l~  218 (576)
T 2acx_A          190 RVLGKGGFGEVCACQVRAT-------GKMYACKKLE  218 (576)
T ss_dssp             EEEEEETTEEEEEEEETTT-------CCEEEEEEEE
T ss_pred             EEEeeCCCEEEEEEEECCC-------CCEEEEEEEE
Confidence            6899999999999998752       6999999875

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=93.56  E-value=0.22  Score=50.29  Aligned_cols=121  Identities=14%  Similarity=-0.034  Sum_probs=65.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|+-|+||+|+.+.+       |+.||||+..+.-..                  ....     .        .-
T Consensus       140 ~~~LG~G~~g~V~~a~~~~~-------~~~vavK~~~~~~~~------------------~~~~-----~--------~~  181 (419)
T 3i6u_A          140 SKTLGSGACGEVKLAFERKT-------CKKVAIRIISKRKFA------------------IGSA-----R--------EA  181 (419)
T ss_dssp             EEEEEECSSSEEEEEEETTT-------CCEEEEEEEEGGGGT------------------TC------------------
T ss_pred             EeEEeeCCCeEEEEEEECCC-------CcEEEEEEEEechhc------------------cccc-----c--------cc
Confidence            46899999999999998752       699999997654210                  0000     0        00


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCC-CCCCCeEEeecccCccccchhHHhhh-chhhHHHHHHHHHHHHHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP-LVHPAVLVETYEQGECVSRYVDELQG-HERLKSALAHIGTHALLK  446 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~-lst~rVLVmE~i~G~~i~~~~~~l~~-~~~~~~~LA~~g~~aflk  446 (455)
                      ....++.+|++.+.++.     ++++  .+.+.- -...-.|||||++|-.+.+++..-.. .......++..++++ +.
T Consensus       182 ~~~~~~~~E~~~l~~l~-----hpni--v~l~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~i~~qi~~~-l~  253 (419)
T 3i6u_A          182 DPALNVETEIEILKKLN-----HPCI--IKIKNFFDAEDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLA-VQ  253 (419)
T ss_dssp             ---CCHHHHHHHHHHCC-----CTTB--CCCCEEEESSEEEEEEECCTTCBGGGGTSSSCCCCHHHHHHHHHHHHHH-HH
T ss_pred             hhHHHHHHHHHHHHhCC-----CCCE--eeEEEEEecCceEEEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHH-HH
Confidence            12245677777776652     2221  122111 12334799999999888765432110 111123344444443 33


Q ss_pred             hhhccCCCC
Q 012848          447 MLLVPYLNN  455 (455)
Q Consensus       447 mlf~dgFv~  455 (455)
                      -|-..|++|
T Consensus       254 ~LH~~~ivH  262 (419)
T 3i6u_A          254 YLHENGIIH  262 (419)
T ss_dssp             HHHHTTCCC
T ss_pred             HHHHCCccc
Confidence            344566666

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=93.54  E-value=0.038  Score=55.08  Aligned_cols=33  Identities=18%  Similarity=0.148  Sum_probs=27.8

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+.+...
T Consensus        17 ~~~LG~G~fg~V~~~~~~~~-------~~~~avK~i~~~~   49 (361)
T 2yab_A           17 GEELGSGQFAIVKKCREKST-------GLEYAAKFIKKRQ   49 (361)
T ss_dssp             EEEEEEETTEEEEEEEETTT-------CCEEEEEEEEBCS
T ss_pred             eeEEeeCcCEEEEEEEECCC-------CCEEEEEEEEccc
Confidence            46799999999999998752       6999999987653

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=93.46  E-value=0.052  Score=52.70  Aligned_cols=32  Identities=19%  Similarity=0.104  Sum_probs=26.8

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|+||+|+-+.       .|+.||||+.+++
T Consensus        24 ~~~lg~G~~g~V~~~~~~~-------~~~~vaiK~~~~~   55 (373)
T 1q8y_A           24 VRKLGWGHFSTVWLAKDMV-------NNTHVAMKIVRGD   55 (373)
T ss_dssp             EEEEEECSSEEEEEEEETT-------TTEEEEEEEECSC
T ss_pred             EEeeeecCCeEEEEEEecC-------CCcEEEEEEecCC
Confidence            4689999999999999764       2699999998753

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=93.43  E-value=0.33  Score=47.67  Aligned_cols=42  Identities=21%  Similarity=0.168  Sum_probs=31.8

Q ss_pred             CCChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          277 GRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       277 G~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      ..+..+.|...  +.||.|+-|+||+|+...       .|+.||||+....
T Consensus        49 ~~~~~~~y~~~--~~lG~G~~g~Vy~a~~~~-------~~~~vaiK~~~~~   90 (348)
T 1u5q_A           49 KDDPEKLFSDL--REIGHGSFGAVYFARDVR-------NSEVVAIKKMSYS   90 (348)
T ss_dssp             CSCHHHHEEEE--EEEEECSSEEEEEEEETT-------TTEEEEEEEEESC
T ss_pred             ccchhhheeee--eEEccCCCEEEEEEEEcc-------CCeEEEEEEEccc
Confidence            44556666533  579999999999999764       2699999987654

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=93.41  E-value=0.12  Score=54.01  Aligned_cols=30  Identities=20%  Similarity=0.205  Sum_probs=25.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.||.|+.|.||+|+.+..       |+.||||+..
T Consensus        12 ~~~LG~G~fG~Vy~a~~~~~-------~~~vAvK~~~   41 (483)
T 3sv0_A           12 GRKIGSGSFGEIYLGTNIQT-------NEEVAIKLEN   41 (483)
T ss_dssp             CCCCEECSSCEEEEEEETTT-------CCEEEEEEEE
T ss_pred             EEEEeeCCCEEEEEEEECCC-------CcEEEEEEec
Confidence            47899999999999997642       6999999744

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=93.40  E-value=0.14  Score=50.65  Aligned_cols=32  Identities=16%  Similarity=0.252  Sum_probs=26.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+.+..
T Consensus        34 ~~~lG~G~~g~V~~~~~~~~-------~~~~avK~~~~~   65 (362)
T 2bdw_A           34 KEELGKGAFSVVRRCVHKTT-------GLEFAAKIINTK   65 (362)
T ss_dssp             EEEEEEETTEEEEEEEETTT-------CCEEEEEEEETT
T ss_pred             eeEEecCCCeEEEEEEECCC-------CCEEEEEEEEcc
Confidence            36799999999999998752       699999998654

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=93.37  E-value=0.075  Score=55.35  Aligned_cols=31  Identities=19%  Similarity=0.243  Sum_probs=26.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|+||+|+.+.+       |+.||||+.++
T Consensus        21 ~~~LG~G~fg~V~~a~~~~~-------g~~vAvK~i~~   51 (476)
T 2y94_A           21 GDTLGVGTFGKVKVGKHELT-------GHKVAVKILNR   51 (476)
T ss_dssp             EEEEECCSSSCEEEEEETTT-------CCEEEEEEEEH
T ss_pred             EEEEeeCCCeEEEEEEECCC-------CCEEEEEEEEh
Confidence            57899999999999998752       69999998764

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=93.34  E-value=0.16  Score=51.55  Aligned_cols=31  Identities=26%  Similarity=0.139  Sum_probs=26.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|+||+|+.+..       |+.||||+.+.
T Consensus       102 ~~~LG~G~fg~V~~a~~~~~-------~~~vAvK~~~~  132 (429)
T 3kvw_A          102 LKVIGKGSFGQVVKAYDHKV-------HQHVALKMVRN  132 (429)
T ss_dssp             EEEEEESSSEEEEEEEETTT-------TEEEEEEEECS
T ss_pred             EEEcccCccEEEEEEEECCC-------CcEEEEEEECC
Confidence            36899999999999998752       69999999864

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=93.31  E-value=0.1  Score=50.29  Aligned_cols=33  Identities=15%  Similarity=0.081  Sum_probs=27.6

Q ss_pred             ccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          288 EEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       288 d~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      ..+.||.|+-|.||+|+.+.+       |+.||||+....
T Consensus        33 ~~~~lG~G~~g~V~~~~~~~~-------~~~vavK~~~~~   65 (327)
T 3lm5_A           33 TSKELGRGKFAVVRQCISKST-------GQEYAAKFLKKR   65 (327)
T ss_dssp             EEEEEEEETTEEEEEEEETTT-------CCEEEEEEEESE
T ss_pred             ccceeCCCCCeEEEEEEECCC-------CCEEEEEEEehh
Confidence            347899999999999998752       699999987654

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=93.31  E-value=0.1  Score=49.04  Aligned_cols=32  Identities=22%  Similarity=0.199  Sum_probs=26.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+.+..
T Consensus         7 ~~~lg~G~~g~V~~~~~~~~-------~~~vavK~~~~~   38 (292)
T 3o0g_A            7 LEKIGEGTYGTVFKAKNRET-------HEIVALKRVRLD   38 (292)
T ss_dssp             EEEEEECSSSEEEEEEETTT-------CCEEEEEEEESS
T ss_pred             eeEecCCCCeEEEEEEECCC-------CceEEEEeeecc
Confidence            36799999999999998752       699999998754

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=93.25  E-value=0.24  Score=46.54  Aligned_cols=39  Identities=18%  Similarity=0.256  Sum_probs=29.9

Q ss_pred             hHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          280 LSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       280 ~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.+-|.-  .+.||.|+-|.||+|+.+..       |+.||||+...+
T Consensus        20 i~~~y~~--~~~lg~G~~g~V~~~~~~~~-------~~~~aiK~~~~~   58 (285)
T 3is5_A           20 IDDLFIF--KRKLGSGAFGDVHLVEERSS-------GLERVIKTINKD   58 (285)
T ss_dssp             HHHHEEE--EEEEEECSSCEEEEEEETTT-------CCEEEEEEEEGG
T ss_pred             hhhheee--cceeccCCCeEEEEEEEccC-------CceEEEEEeecc
Confidence            4444432  57899999999999998652       699999987654

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=93.22  E-value=0.21  Score=48.32  Aligned_cols=32  Identities=19%  Similarity=0.042  Sum_probs=26.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+.|+||+|+.++.       |+.||+|+....
T Consensus        46 ~~~lg~G~~g~Vy~~~~~~~-------~~~~a~K~~~~~   77 (335)
T 2owb_A           46 GRFLGKGGFAKCFEISDADT-------KEVFAGKIVPKS   77 (335)
T ss_dssp             EEEEEEETTEEEEEEEETTT-------CCEEEEEEEEGG
T ss_pred             EEEEeeCCCeEEEEEEECCC-------CCEEEEEEechh
Confidence            47899999999999998752       689999997654

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=93.18  E-value=0.37  Score=47.35  Aligned_cols=31  Identities=13%  Similarity=0.069  Sum_probs=26.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|+||+|+.+.+       |+.||||+.+.
T Consensus        10 ~~~lG~G~fg~V~~~~~~~~-------~~~vaiK~~~~   40 (337)
T 1o6l_A           10 LKLLGKGTFGKVILVREKAT-------GRYYAMKILRK   40 (337)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------CCEEEEEEEEH
T ss_pred             EEEEecCCCeEEEEEEECCC-------CCEEEEEEEeH
Confidence            47899999999999998752       69999999764

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=93.17  E-value=0.3  Score=48.06  Aligned_cols=55  Identities=7%  Similarity=-0.079  Sum_probs=43.3

Q ss_pred             CCCCHHHHHHHHHHHhCCChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          261 PEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       261 pp~~~~~v~~vle~elG~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      |+.+.+.+.+.+.+.+|.+..    .++..|.|.+++..||+-+..+        | .+++|+.+|.-
T Consensus         4 p~l~~~~l~~~l~~~ygl~~~----~~~~l~~G~g~~N~vy~v~~~~--------g-~~vLK~~~~~~   58 (339)
T 3i1a_A            4 QPIQAQQLIELLKVHYGIDIH----TAQFIQGGADTNAFAYQADSES--------K-SYFIKLKYGYH   58 (339)
T ss_dssp             CSSCTTHHHHHHHHHHCCCCS----EEEEETTTSCSSCEEEEEECSS--------C-EEEEEEEECSS
T ss_pred             CCCCHHHHHHHHHHHcCCCcc----eeEEeeccCccccceEEEEeCC--------C-CEEEEEecCcc
Confidence            667888899999999997643    4566777888899999987643        5 89999987753

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=93.15  E-value=0.24  Score=48.81  Aligned_cols=31  Identities=16%  Similarity=0.107  Sum_probs=26.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|+||+|+.+.+       |+.||||+.++
T Consensus        46 ~~~lG~G~~g~V~~~~~~~~-------~~~~aiK~~~~   76 (350)
T 1rdq_E           46 IKTLGTGSFGRVMLVKHKES-------GNHYAMKILDK   76 (350)
T ss_dssp             EEEEEECSSCEEEEEEETTT-------CCEEEEEEEEH
T ss_pred             EEEeecCcCcEEEEEEECCC-------CCEEEEEEEEh
Confidence            47899999999999998752       69999999754

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=93.15  E-value=0.28  Score=45.57  Aligned_cols=32  Identities=16%  Similarity=0.080  Sum_probs=26.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+.++.
T Consensus        12 ~~~lg~G~~g~V~~~~~~~~-------~~~vavK~~~~~   43 (290)
T 3fme_A           12 IMELGRGAYGVVEKMRHVPS-------GQIMAVKRIRAT   43 (290)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------TEEEEEEEEC--
T ss_pred             HHhcCCCCCeEEEEEEecCC-------CeEEEEEEeecc
Confidence            46799999999999998652       699999998754

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=93.08  E-value=0.23  Score=50.94  Aligned_cols=30  Identities=20%  Similarity=0.258  Sum_probs=26.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.||.|+-|.||+|+.+++       |+.||||+.+
T Consensus        79 ~~~LG~G~fG~V~~~~~~~~-------~~~vAvK~~~  108 (437)
T 4aw2_A           79 LKVIGRGAFGEVAVVKLKNA-------DKVFAMKILN  108 (437)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------TEEEEEEEEE
T ss_pred             EEEEEeCCCEEEEEEEEcCC-------CcEEEEEEEE
Confidence            47899999999999999862       6999999875

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=93.03  E-value=0.32  Score=46.05  Aligned_cols=31  Identities=23%  Similarity=0.155  Sum_probs=26.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|.||+|+-+.       .|+.||||+.+.
T Consensus        14 ~~~lg~G~~g~V~~~~~~~-------~~~~vavK~~~~   44 (308)
T 3g33_A           14 VAEIGVGAYGTVYKARDPH-------SGHFVALKSVRV   44 (308)
T ss_dssp             EEEECCSSSCCEEEEECTT-------TCCEEEEEEEEE
T ss_pred             EEEEecCCCeEEEEEEECC-------CCcEEEEEEEec
Confidence            4679999999999999754       269999998764

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=93.02  E-value=0.17  Score=48.52  Aligned_cols=32  Identities=19%  Similarity=0.157  Sum_probs=19.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|+||+|+.+.+       |+.||||+.+.+
T Consensus        10 ~~~lg~G~~g~V~~~~~~~~-------~~~vaiK~~~~~   41 (317)
T 2pmi_A           10 LEKLGNGTYATVYKGLNKTT-------GVYVALKEVKLD   41 (317)
T ss_dssp             ---------CEEEEEECSSS-------CCEEEEEEEECC
T ss_pred             eeEECCCCCEEEEEEEECCC-------CcEEEEEEeecc
Confidence            46899999999999988652       699999987654

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=92.98  E-value=0.05  Score=53.73  Aligned_cols=34  Identities=18%  Similarity=0.088  Sum_probs=26.4

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.||.|+-|.||+|+-..+    ...|+.||||+.+..
T Consensus        30 ~~lG~G~fg~Vy~a~~~~~----~~~~~~vAiK~i~~~   63 (304)
T 3ubd_A           30 KVLGQGSFGKVFLVKKISG----SDARQLYAMKVLKKA   63 (304)
T ss_dssp             EEEECGGGCEEEEEEECSS----TTTTCEEEEEEEESE
T ss_pred             EEEecCCCeEEEEEEEccC----CCCCEEEEEEEEehH
Confidence            6799999999999986431    113689999998764

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=92.96  E-value=0.16  Score=49.29  Aligned_cols=30  Identities=20%  Similarity=0.084  Sum_probs=25.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+.+
T Consensus        40 ~~~lG~G~~g~V~~~~~~~~-------~~~vavK~~~   69 (360)
T 3llt_A           40 IRKMGDGTFGRVLLCQHIDN-------KKYYAVKVVR   69 (360)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------CCEEEEEEEC
T ss_pred             EEEEcccCCeEEEEEEECCC-------CeEEEEEEec
Confidence            37899999999999998652       6999999975

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=92.94  E-value=0.26  Score=47.77  Aligned_cols=31  Identities=16%  Similarity=0.113  Sum_probs=25.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+..+        |+.||||+....
T Consensus        14 ~~~lG~G~~g~Vy~~~~~~--------~~~vavK~~~~~   44 (343)
T 3dbq_A           14 LKQIGSGGSSKVFQVLNEK--------KQIYAIKYVNLE   44 (343)
T ss_dssp             EEEESCCSSEEEEEEECTT--------SCEEEEEEEECT
T ss_pred             EEEEecCCCeEEEEEEeCC--------CCEEEEEEeecc
Confidence            3689999999999998753        689999987654

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=92.90  E-value=0.11  Score=49.21  Aligned_cols=30  Identities=13%  Similarity=0.020  Sum_probs=25.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.+|.|+-|.||+|+.+.+       |+.||||+.+
T Consensus        23 ~~~lg~G~~g~V~~~~~~~~-------~~~vaiK~~~   52 (299)
T 3m2w_A           23 SQVLGLGINGKVLQIFNKRT-------QEKFALKMLQ   52 (299)
T ss_dssp             EEEEEEETTEEEEEEEETTT-------CCEEEEEEEE
T ss_pred             CcccccCCCeEEEEEEEcCC-------CcEEEEEEec
Confidence            36899999999999998652       6999999874

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=92.85  E-value=0.13  Score=50.50  Aligned_cols=37  Identities=19%  Similarity=0.258  Sum_probs=28.4

Q ss_pred             hHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          280 LSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       280 ~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      +.+.|+-  .+.||.|+-|.||+|+.+.+       |+.||||+.+
T Consensus        22 ~~~~y~~--~~~lG~G~~g~V~~~~~~~~-------~~~vavK~~~   58 (351)
T 3c0i_A           22 FEDVYEL--CEVIGKGPFSVVRRCINRET-------GQQFAVKIVD   58 (351)
T ss_dssp             HHHHEEE--EEEEEECSSEEEEEEEETTT-------CCEEEEEEEE
T ss_pred             cccceEE--eeEEeeCCCEEEEEEEECCC-------CCEEEEEEEE
Confidence            3444432  36899999999999998752       6999999875

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=92.84  E-value=0.33  Score=52.23  Aligned_cols=35  Identities=20%  Similarity=0.301  Sum_probs=27.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.||.|+-|.||+|.....     ..|+.||||+.+.+.
T Consensus       374 ~~~LG~G~fG~Vy~~~~~~~-----~~~~~vAvK~~~~~~  408 (635)
T 4fl3_A          374 DKELGSGNFGTVKKGYYQMK-----KVVKTVAVKILKNEA  408 (635)
T ss_dssp             EEEEEECSSEEEEEEEEECS-----SCEEEEEEEEECGGG
T ss_pred             CCEeccCCCEEEEEEEEcCC-----CcceEEEEEEecccc
Confidence            45799999999999977542     125899999987653

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=92.81  E-value=0.44  Score=44.65  Aligned_cols=31  Identities=19%  Similarity=0.068  Sum_probs=26.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|+||+|+.+.       .|+.||||+.+.
T Consensus        10 ~~~lg~G~~g~V~~~~~~~-------~~~~~avK~~~~   40 (305)
T 2wtk_C           10 GDLLGEGSYGKVKEVLDSE-------TLCRRAVKILKK   40 (305)
T ss_dssp             CCEEEECSSCEEEEEEBTT-------TCCEEEEEEECH
T ss_pred             eeEEecCCCeEEEEEEECC-------CCcEEEEEEecc
Confidence            5789999999999999865       268999998764

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=92.79  E-value=0.33  Score=49.36  Aligned_cols=30  Identities=17%  Similarity=0.246  Sum_probs=26.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.||.|+-|+||+|+.+.+       |+.||||+.+
T Consensus        66 ~~~lG~G~fG~V~~~~~~~~-------~~~vAiK~l~   95 (412)
T 2vd5_A           66 LKVIGRGAFSEVAVVKMKQT-------GQVYAMKIMN   95 (412)
T ss_dssp             EEEEEECSSCEEEEEEETTT-------CCEEEEEEEE
T ss_pred             EEEEeeCCCeEEEEEEECCC-------CCEEEEEEEe
Confidence            47899999999999999752       6999999975

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=92.79  E-value=0.18  Score=47.71  Aligned_cols=31  Identities=13%  Similarity=-0.048  Sum_probs=24.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|+||+|+-+.       .|+.||||+.++
T Consensus        34 ~~~lg~G~~g~V~~~~~~~-------~~~~vavK~~~~   64 (317)
T 2buj_A           34 IQKLGEGGFSYVDLVEGLH-------DGHFYALKRILC   64 (317)
T ss_dssp             EEEEEC--CEEEEEEEETT-------TCCEEEEEEEEE
T ss_pred             EEEecCCCCeEEEEEEecC-------CCcEEEEEEEec
Confidence            4789999999999999864       269999998754

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=92.78  E-value=0.083  Score=52.08  Aligned_cols=30  Identities=23%  Similarity=0.200  Sum_probs=25.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.||.|+-|+||+|+.+.+       |+.||||+..
T Consensus        14 ~~~lG~G~~g~V~~a~~~~~-------~~~vaiK~~~   43 (336)
T 3h4j_B           14 RETLGEGSFGKVKLATHYKT-------QQKVALKFIS   43 (336)
T ss_dssp             EEEEEEETTEEEEEEEETTT-------CCEEEEEEEE
T ss_pred             EEEEecCCCeEEEEEEECCC-------CCEEEEEEEe
Confidence            47899999999999998652       6999999865

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=92.73  E-value=0.17  Score=49.22  Aligned_cols=32  Identities=25%  Similarity=0.215  Sum_probs=25.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+.+++
T Consensus        15 ~~~lg~G~~g~Vy~~~~~~~-------~~~vavK~~~~~   46 (346)
T 1ua2_A           15 LDFLGEGQFATVYKARDKNT-------NQIVAIKKIKLG   46 (346)
T ss_dssp             EEEEEEETTEEEEEEECSSC-------CSEEEEEEC---
T ss_pred             EeEEeecCCEEEEEEEECCC-------CcEEEEEEEecC
Confidence            47899999999999998752       699999998764

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=92.67  E-value=0.31  Score=47.39  Aligned_cols=32  Identities=19%  Similarity=0.029  Sum_probs=26.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|+||+|+.+.       .|+.||||+.+.+
T Consensus        42 ~~~lg~G~~g~V~~~~~~~-------~~~~vavK~~~~~   73 (397)
T 1wak_A           42 IRKLGWGHFSTVWLSWDIQ-------GKKFVAMKVVKSA   73 (397)
T ss_dssp             EEEEEECSSEEEEEEEETT-------TTEEEEEEEECSC
T ss_pred             EEEeeecCCeeEEEEEecC-------CCeEEEEEEEecC
Confidence            3679999999999998765       2699999998643

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=92.65  E-value=0.16  Score=50.86  Aligned_cols=32  Identities=25%  Similarity=0.233  Sum_probs=27.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      -+.||.|+-|+||+|+.+.+       |+.||||+.+..
T Consensus        43 ~~~lG~G~fg~V~~~~~~~~-------~~~~AiK~~~~~   74 (373)
T 2r5t_A           43 LKVIGKGSFGKVLLARHKAE-------EVFYAVKVLQKK   74 (373)
T ss_dssp             EEEEECCTTCEEEEEEETTT-------CCEEEEEEEEGG
T ss_pred             EEEEeeCCCeEEEEEEEcCC-------CCEEEEEEEEHH
Confidence            47899999999999998752       689999998754

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=92.64  E-value=0.62  Score=45.78  Aligned_cols=32  Identities=25%  Similarity=0.107  Sum_probs=27.1

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+.+..
T Consensus        47 ~~~lG~G~~g~Vy~~~~~~~-------~~~vaiK~~~~~   78 (371)
T 4exu_A           47 PTHVGSGAYGSVCSAIDKRS-------GEKVAIKKLSRP   78 (371)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------TEEEEEEEECST
T ss_pred             EeEEecCCCeEEEEEEECCC-------CCEEEEEEeccc
Confidence            46799999999999998652       699999988754

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=92.63  E-value=0.11  Score=56.95  Aligned_cols=33  Identities=18%  Similarity=0.109  Sum_probs=27.8

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+.+++.
T Consensus        19 ~~~LG~G~fG~Vyla~~~~t-------g~~VAVKvi~~~~   51 (676)
T 3qa8_A           19 KERLGTGGFGYVLRWIHQDT-------GEQVAIKQCRQEL   51 (676)
T ss_dssp             CCCCCBCSSSBCCCCCCTTT-------TCCEEECCCCSCC
T ss_pred             EEEEeeCCCeEEEEEEECCC-------CcEEEEEEecccC
Confidence            57899999999999998652       6899999987653

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=92.60  E-value=0.24  Score=47.25  Aligned_cols=32  Identities=22%  Similarity=0.256  Sum_probs=26.1

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|.||+|+.+..  |    ++.||||+.+.
T Consensus        24 ~~~lg~G~~g~V~~~~~~~~--~----~~~vavK~~~~   55 (355)
T 2eu9_A           24 VGNLGEGTFGKVVECLDHAR--G----KSQVALKIIRN   55 (355)
T ss_dssp             EEEEEEETTEEEEEEEETTT--T----TEEEEEEEECS
T ss_pred             EEEeeccCCeEEEEEEecCC--C----ceEEEEEEEcc
Confidence            46799999999999998642  2    48999999864

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=92.54  E-value=0.25  Score=46.12  Aligned_cols=32  Identities=28%  Similarity=0.172  Sum_probs=20.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||+|+-|.||+|+.+.       .|+.||||+....
T Consensus        20 ~~~lg~G~~g~V~~~~~~~-------~~~~vaiK~~~~~   51 (303)
T 2vwi_A           20 QEVIGSGATAVVQAAYCAP-------KKEKVAIKRINLE   51 (303)
T ss_dssp             EEECC---CCCEEEEEC-----------CEEEEECCC--
T ss_pred             hheeccccceEEEEEEECC-------CCcEEEEEEEEhh
Confidence            4789999999999998764       2689999987543

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=92.52  E-value=0.14  Score=48.84  Aligned_cols=29  Identities=28%  Similarity=0.245  Sum_probs=24.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|.||+|+.+         |+.||||+..+
T Consensus        42 ~~~lg~G~~g~V~~~~~~---------~~~vavK~~~~   70 (337)
T 3mdy_A           42 VKQIGKGRYGEVWMGKWR---------GEKVAVKVFFT   70 (337)
T ss_dssp             EEEEEEETTEEEEEEEET---------TEEEEEEEEEG
T ss_pred             EeEeecCCCeEEEEEEEC---------CceEEEEEEec
Confidence            578999999999999874         58999998743

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=92.47  E-value=0.3  Score=48.96  Aligned_cols=35  Identities=20%  Similarity=0.227  Sum_probs=26.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|+||+|+-+.+ .   ..++.||||+..+.
T Consensus        26 ~~~lG~G~fg~Vy~a~~~~~-~---~~~~~vAiK~i~~~   60 (361)
T 4f9c_A           26 EDKIGEGTFSSVYLATAQLQ-V---GPEEKIALKHLIPT   60 (361)
T ss_dssp             EEEEEECSSEEEEEEEEEBT-T---SCEEEEEEEEECTT
T ss_pred             EEEEecccCcEEEEEEEccc-C---CCCCEEEEEEEccc
Confidence            35799999999999986521 0   12589999987653

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=92.46  E-value=0.33  Score=46.14  Aligned_cols=35  Identities=23%  Similarity=0.248  Sum_probs=22.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+..  +  .....||||+.+++
T Consensus        28 ~~~lg~G~~g~Vy~~~~~~~--~--~~~~~vavK~~~~~   62 (323)
T 3qup_A           28 GRMLGKGEFGSVREAQLKQE--D--GSFVKVAVKMLKAD   62 (323)
T ss_dssp             EEEEEEETTEEEEEEEC-----------CEEEEEEC---
T ss_pred             eceecccCCeEEEEEEEccc--C--CcceeEEEEEeccc
Confidence            47899999999999998752  1  01248999998765

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=92.42  E-value=0.56  Score=43.70  Aligned_cols=34  Identities=15%  Similarity=0.133  Sum_probs=26.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|.||+|+..++  +  ..+..||||+...
T Consensus        26 ~~~lg~G~~g~Vy~~~~~~~--~--~~~~~~aiK~~~~   59 (298)
T 3pls_A           26 DRVIGKGHFGVVYHGEYIDQ--A--QNRIQCAIKSLSR   59 (298)
T ss_dssp             EEEEEEETTEEEEEEEEECS--S--SCEEEEEEEEETT
T ss_pred             CceeccCCCceEEEEEEecC--C--Cceeeeeeeeccc
Confidence            37899999999999998652  1  1246899998764

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=92.42  E-value=0.35  Score=46.45  Aligned_cols=29  Identities=31%  Similarity=0.174  Sum_probs=25.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|.||+|+..         |+.||||+.+.
T Consensus        29 ~~~lg~G~~g~Vy~~~~~---------~~~vavK~~~~   57 (322)
T 3soc_A           29 LEVKARGRFGCVWKAQLL---------NEYVAVKIFPI   57 (322)
T ss_dssp             EEEEECSTTCEEEEEEET---------TEEEEEEEECG
T ss_pred             hheecccCceEEEEEEEC---------CCEEEEEEeec
Confidence            478999999999999874         48999999854

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=92.39  E-value=0.18  Score=48.62  Aligned_cols=32  Identities=19%  Similarity=0.122  Sum_probs=27.1

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+-+.       .|+.||||+.+..
T Consensus        39 ~~~lg~G~~g~V~~~~~~~-------~~~~vaiK~~~~~   70 (329)
T 3gbz_A           39 ITKLGEGTYGEVYKAIDTV-------TNETVAIKRIRLE   70 (329)
T ss_dssp             EEEEEECSSSEEEEEEETT-------TTEEEEEEECCCC
T ss_pred             EEEEEecCCeEEEEEEECC-------CCceEEEEEEccc
Confidence            4789999999999998764       2699999998654

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=92.30  E-value=0.13  Score=51.64  Aligned_cols=32  Identities=22%  Similarity=0.212  Sum_probs=26.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|+||+|+.+.+       |+.||+|+....
T Consensus        56 ~~~LG~G~~g~Vy~~~~~~~-------~~~~a~K~~~~~   87 (387)
T 1kob_A           56 LEELGSGAFGVVHRCVEKAT-------GRVFVAKFINTP   87 (387)
T ss_dssp             EEEEEEETTEEEEEEEETTT-------CCEEEEEEEECC
T ss_pred             EEEEecCCCEEEEEEEECCC-------CCEEEEEEeccc
Confidence            46799999999999998752       689999987643

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=92.24  E-value=0.47  Score=43.84  Aligned_cols=32  Identities=13%  Similarity=0.130  Sum_probs=27.1

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|+||+|+.+.+       |+.||||+.+++
T Consensus        11 ~~~lg~G~~g~V~~~~~~~~-------~~~vaiK~~~~~   42 (279)
T 2w5a_A           11 LYTIGTGSYGRCQKIRRKSD-------GKILVWKELDYG   42 (279)
T ss_dssp             EEEEEECSSSEEEEEEETTT-------CCEEEEEEEECT
T ss_pred             ehhccCCCCcEEEEEEECCC-------CcEEEEEEEEcc
Confidence            47899999999999998752       699999987654

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=92.18  E-value=0.49  Score=45.09  Aligned_cols=33  Identities=18%  Similarity=0.202  Sum_probs=27.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+.++..
T Consensus        27 ~~~lg~G~~g~Vy~~~~~~~-------~~~vaiK~~~~~~   59 (327)
T 3aln_A           27 LGEIGRGAYGSVNKMVHKPS-------GQIMAVKRIRSTV   59 (327)
T ss_dssp             -CEEEECSSEEEEEEEETTT-------TEEEEEEEEECCC
T ss_pred             hheeccCCCEEEEEEEEcCC-------CCEEEEEEeeccc
Confidence            46799999999999998752       6999999987653

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=92.16  E-value=0.5  Score=45.93  Aligned_cols=113  Identities=12%  Similarity=0.138  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHhCCChHhhccccccccc-cccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHH
Q 012848          266 AYTKKTIERAFGRRLSEIFDGFEEAPV-ASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAK  344 (455)
Q Consensus       266 ~~v~~vle~elG~~~~eiF~~fd~~Pi-ASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~  344 (455)
                      +.+.+.|++.++.. .. .+--+-+|+ +.|....+|+-+.....+| ..+|+++++|+..|+-.               
T Consensus         4 ~~l~~~l~~~~~~~-~~-~~v~~~~~l~~~G~~n~~y~v~~~~~~~~-~~~~~~~vlR~~~~~~~---------------   65 (357)
T 3ats_A            4 AVISRWLSSVLPGG-AA-PEVTVESGVDSTGMSSETIILTARWQQDG-RSIQQKLVARVAPAAED---------------   65 (357)
T ss_dssp             HHHHHHHHHHSCTT-CC-CEEEEEEEECTTSSEEEEEEEEEEEEETT-EEEEEEEEEEECCCGGG---------------
T ss_pred             HHHHHHHHHhcCCc-CC-CceEEEEECCCCCccceEEEEEEecccCC-CCCCceEEEEeCCCCCc---------------
Confidence            34566666666531 00 001134688 8999999999877410011 00147899998776531               


Q ss_pred             HHccccCccccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCC-----CCCeEEeecccCccc
Q 012848          345 ISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLV-----HPAVLVETYEQGECV  419 (455)
Q Consensus       345 l~~~~P~l~~l~l~e~v~ef~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~ls-----t~rVLVmE~i~G~~i  419 (455)
                          .+..                 ..-++..|++.++.+++.    ..+.+|+++.-..     ....++|||++|.++
T Consensus        66 ----~~~~-----------------~~~~~~~E~~~l~~L~~~----~~vpvP~v~~~~~~~~~~g~~~~v~e~l~G~~l  120 (357)
T 3ats_A           66 ----VPVF-----------------PTYRLDHQFEVIRLVGEL----TDVPVPRVRWIETTGDVLGTPFFLMDYVEGVVP  120 (357)
T ss_dssp             ----CCSS-----------------SCCCHHHHHHHHHHHHHH----CCSCCCCEEEEECSSTTTSSCEEEEECCCCBCC
T ss_pred             ----cccC-----------------chhHHHHHHHHHHHHhhc----CCCCCCcEEEEccCCCccCCceEEEEecCCCCh
Confidence                0000                 013567888888877765    3577999885222     234799999999998


Q ss_pred             cc
Q 012848          420 SR  421 (455)
Q Consensus       420 ~~  421 (455)
                      .+
T Consensus       121 ~~  122 (357)
T 3ats_A          121 PD  122 (357)
T ss_dssp             CB
T ss_pred             hh
Confidence            75

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=92.16  E-value=0.21  Score=46.93  Aligned_cols=30  Identities=27%  Similarity=0.240  Sum_probs=24.8

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.||.|+-|+||+|+..          .+||||+.+...
T Consensus        29 ~~~lG~G~~g~Vy~~~~~----------~~vavK~~~~~~   58 (289)
T 3og7_A           29 GQRIGSGSFGTVYKGKWH----------GDVAVKMLNVTA   58 (289)
T ss_dssp             EEEEEECSSEEEEEEESS----------SEEEEEEESCSS
T ss_pred             eeEecCCCCeEEEEEEEc----------CceEEEEEeccC
Confidence            478999999999999874          369999987553

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=92.05  E-value=0.44  Score=44.11  Aligned_cols=43  Identities=26%  Similarity=0.365  Sum_probs=31.6

Q ss_pred             HHhCCChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          274 RAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       274 ~elG~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      ...|..+++ |.  -.+.|+.|+-|+||+|+.+.       .|+.||||+..+
T Consensus         4 ~~~g~~~~~-y~--~~~~lg~G~~g~Vy~~~~~~-------~~~~vavK~~~~   46 (278)
T 3cok_A            4 TCIGEKIED-FK--VGNLLGKGSFAGVYRAESIH-------TGLEVAIKMIDK   46 (278)
T ss_dssp             HHHCSSGGG-EE--EEEEEEECSSEEEEEEEETT-------TCCEEEEEEEEH
T ss_pred             ccccccccc-ce--eeeeecCCCceEEEEEEEcc-------CCceEEEEEeeh
Confidence            345665554 22  15789999999999999864       269999998754

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=91.99  E-value=0.1  Score=50.20  Aligned_cols=30  Identities=10%  Similarity=0.006  Sum_probs=25.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+. +        |+.||||+.++.
T Consensus        36 ~~~lg~G~~g~V~~~~~-~--------~~~vavK~~~~~   65 (348)
T 2pml_X           36 IRTLNQGKFNKIILCEK-D--------NKFYALKKYEKS   65 (348)
T ss_dssp             EEEEECCSSCCEEEEEE-T--------TEEEEEEEEEHH
T ss_pred             EEEEcCCCCeEEEEEEc-C--------CceEEEEEeecc
Confidence            47899999999999998 3        699999997754

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=91.91  E-value=0.54  Score=44.04  Aligned_cols=32  Identities=22%  Similarity=0.021  Sum_probs=21.8

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|+||+|+.+..       |+.||||+.+..
T Consensus        16 ~~~lg~G~~g~V~~~~~~~~-------~~~vaiK~~~~~   47 (320)
T 2i6l_A           16 LKPLGCGGNGLVFSAVDNDC-------DKRVAIKKIVLT   47 (320)
T ss_dssp             EEECC-----CEEEEEETTT-------TEEEEEEEEECC
T ss_pred             EEEeccCCCeEEEEEEECCC-------CeEEEEEEEecC
Confidence            46899999999999998752       699999987543

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=91.85  E-value=0.31  Score=49.34  Aligned_cols=32  Identities=22%  Similarity=0.198  Sum_probs=27.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+.+..
T Consensus        57 ~~~LG~G~fG~V~~~~~~~~-------~~~~AvK~~~k~   88 (396)
T 4dc2_A           57 LRVIGRGSYAKVLLVRLKKT-------DRIYAMRVVKKE   88 (396)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------TEEEEEEEEEGG
T ss_pred             EEEEeeCCCeEEEEEEECCC-------CCEEEEEEEEhh
Confidence            47899999999999999762       699999997653

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=91.71  E-value=0.26  Score=50.41  Aligned_cols=31  Identities=26%  Similarity=0.243  Sum_probs=26.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|.||+|+-+.+       |+.||||+.++
T Consensus        27 ~~~lG~G~~g~V~~~~~~~~-------~~~vavK~~~~   57 (486)
T 3mwu_A           27 VCMLGKGSFGEVLKCKDRIT-------QQEYAVKVINK   57 (486)
T ss_dssp             EEEEECCSSSEEEEEEETTT-------CCEEEEEEEEH
T ss_pred             eEEEeecCCEEEEEEEECCC-------CCEEEEEEEec
Confidence            46899999999999998752       69999998753

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=91.69  E-value=0.44  Score=45.60  Aligned_cols=37  Identities=19%  Similarity=0.213  Sum_probs=27.9

Q ss_pred             hccccc-cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          283 IFDGFE-EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       283 iF~~fd-~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.+.++ .+.||.|+-|.||+|+.++        |+.||||+.+..
T Consensus        19 l~~~y~~~~~lG~G~~g~V~~~~~~~--------~~~vavK~~~~~   56 (311)
T 3niz_A           19 LMEKYQKLEKVGEGTYGVVYKAKDSQ--------GRIVALKRIRLD   56 (311)
T ss_dssp             SSCEEEEEEEEEECSSCEEEEEEETT--------SCEEEEEEEC--
T ss_pred             hHhhhHhhhhccCCCCeEEEEEEECC--------CCEEEEEEEecc
Confidence            334444 4789999999999999754        689999988653

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=91.60  E-value=0.58  Score=47.23  Aligned_cols=32  Identities=22%  Similarity=0.041  Sum_probs=27.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+.+..
T Consensus        31 ~~~lG~G~~g~V~~a~~~~~-------~~~vAiK~~~~~   62 (432)
T 3n9x_A           31 KHLIGRGSYGYVYLAYDKNT-------EKNVAIKKVNRM   62 (432)
T ss_dssp             EEEEEEETTEEEEEEEETTT-------TEEEEEEEECST
T ss_pred             EEEEeecCCEEEEEEEECCC-------CcEEEEEEeCch
Confidence            47899999999999998752       699999988653

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=91.54  E-value=0.29  Score=45.91  Aligned_cols=31  Identities=16%  Similarity=0.134  Sum_probs=25.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|+||+|+.++        |+.||||+.+..
T Consensus         7 ~~~lg~G~~g~V~~~~~~~--------~~~~aiK~~~~~   37 (288)
T 1ob3_A            7 LEKIGEGTYGVVYKAQNNY--------GETFALKKIRLE   37 (288)
T ss_dssp             EEEEEEETTEEEEEEEETT--------SCEEEEEEECCS
T ss_pred             hhhcccCCCEEEEEEEcCC--------CCEEEEEEEecc
Confidence            3679999999999998743        689999988654

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=91.51  E-value=0.2  Score=51.65  Aligned_cols=32  Identities=19%  Similarity=0.105  Sum_probs=25.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+....
T Consensus        41 ~~~lG~G~~g~V~~~~~~~~-------~~~~aiK~~~~~   72 (504)
T 3q5i_A           41 VRKLGSGAYGEVLLCKEKNG-------HSEKAIKVIKKS   72 (504)
T ss_dssp             EEEEEC--CEEEEEEEETTT-------CCEEEEEEEEC-
T ss_pred             EeEecccCCeEEEEEEECCC-------CcEEEEEEEEhh
Confidence            47899999999999998752       689999998764

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=91.45  E-value=0.23  Score=50.34  Aligned_cols=31  Identities=13%  Similarity=0.072  Sum_probs=26.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|+||+|+.+.+       |+.||||+.++
T Consensus       153 ~~~lG~G~~g~V~~~~~~~~-------~~~vaiK~~~~  183 (446)
T 4ejn_A          153 LKLLGKGTFGKVILVKEKAT-------GRYYAMKILKK  183 (446)
T ss_dssp             EEEEEEETTEEEEEEEETTT-------CCEEEEEEEEH
T ss_pred             eEEEeeCcCEEEEEEEEcCC-------CCEEEEEEEEh
Confidence            47899999999999998752       69999999764

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=91.41  E-value=0.6  Score=44.13  Aligned_cols=35  Identities=20%  Similarity=0.226  Sum_probs=24.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+..    ...|+.||||+.+++
T Consensus        39 ~~~lg~G~~g~V~~~~~~~~----~~~~~~vavK~~~~~   73 (313)
T 3brb_A           39 GKILGEGEFGSVMEGNLKQE----DGTSLKVAVKTMKLD   73 (313)
T ss_dssp             EEEEEC-CCCCEEEEEEECT----TSCEEEEEEEEC---
T ss_pred             ccceeecCCeEEEEEEEecc----CCceeEEEEEEEecc
Confidence            36799999999999998752    113579999998765

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=91.38  E-value=0.58  Score=44.01  Aligned_cols=32  Identities=28%  Similarity=0.292  Sum_probs=21.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|+||+|+.+.+       |+.||||+.++.
T Consensus        30 ~~~lg~G~~g~V~~~~~~~~-------~~~vavK~~~~~   61 (318)
T 2dyl_A           30 LGEMGSGTCGQVWKMRFRKT-------GHVIAVKQMRRS   61 (318)
T ss_dssp             EEEC------CEEEEEETTT-------CCEEEEEEEETT
T ss_pred             cceeeecCCeeEEEEEEecC-------CeEEEEEEeccc
Confidence            46899999999999998752       689999998765

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=91.37  E-value=1  Score=42.83  Aligned_cols=98  Identities=14%  Similarity=0.076  Sum_probs=63.6

Q ss_pred             CCCHHHHHHHHHHHhCCChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHH
Q 012848          262 EHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINL  341 (455)
Q Consensus       262 p~~~~~v~~vle~elG~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~  341 (455)
                      ..+.+.+++.|.+.+.. +    ...+-++++.|....||+..            .+++||+.+++       +      
T Consensus         3 ~~~~~~l~~~l~~~~p~-~----~~~~i~~~~~G~~n~v~~v~------------~~~vlR~~~~~-------~------   52 (304)
T 3sg8_A            3 TYTFDQVEKAIEQLYPD-F----TINTIEISGEGNDCIAYEIN------------RDFIFKFPKHS-------R------   52 (304)
T ss_dssp             CCCHHHHHHHHHHHCTT-C----CCCCCCEEEECSSEEEEEST------------TSEEEEEESSH-------H------
T ss_pred             cCCHHHHHHHHHHhCCC-c----cceeeEecCCCCcceEEEEC------------CEEEEEecCCc-------c------
Confidence            45667788888888743 1    11234678899999988842            36999986553       0      


Q ss_pred             HHHHHccccCccccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCC-----CeEEeecccC
Q 012848          342 AAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHP-----AVLVETYEQG  416 (455)
Q Consensus       342 la~l~~~~P~l~~l~l~e~v~ef~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~-----rVLVmE~i~G  416 (455)
                                        ..          -++..|++.++....    ...+.+|+++..-...     .-+||||++|
T Consensus        53 ------------------~~----------~~~~~E~~~l~~l~~----~~~v~vP~~~~~~~~~~~~~~~~~vm~~i~G  100 (304)
T 3sg8_A           53 ------------------GS----------TNLFNEVNILKRIHN----KLPLPIPEVVFTGMPSETYQMSFAGFTKIKG  100 (304)
T ss_dssp             ------------------HH----------HHHHHHHHHHHHHTT----SSSSCCCCEEEECCCCSSCSCSCEEEECCCC
T ss_pred             ------------------hH----------HHHHHHHHHHHHHHh----cCCCCCCceEeecCCCCCCCcceEEEcccCC
Confidence                              00          124667777765543    3467788887532222     3578999999


Q ss_pred             ccccc
Q 012848          417 ECVSR  421 (455)
Q Consensus       417 ~~i~~  421 (455)
                      .++.+
T Consensus       101 ~~l~~  105 (304)
T 3sg8_A          101 VPLTP  105 (304)
T ss_dssp             EECCH
T ss_pred             eECCc
Confidence            99975

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=91.24  E-value=0.49  Score=51.26  Aligned_cols=31  Identities=19%  Similarity=0.135  Sum_probs=26.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|+||+|+.+.+       |+.||||+.+.
T Consensus       346 ~~~LG~G~fG~V~~~~~~~~-------~~~vAvK~l~~  376 (674)
T 3pfq_A          346 LMVLGKGSFGKVMLSERKGT-------DELYAVKILKK  376 (674)
T ss_dssp             EEESSBTTTBCEEEEEESSS-------CCEEEEEEEEH
T ss_pred             EEEEccCCCEEEEEEEECCC-------CcEEEEEEEec
Confidence            47899999999999998752       68999999763

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=91.19  E-value=0.45  Score=48.91  Aligned_cols=32  Identities=25%  Similarity=0.107  Sum_probs=26.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+-+..       |+.||||+....
T Consensus        67 ~~~lG~G~~g~V~~a~~~~~-------~~~vAiK~~~~~   98 (464)
T 3ttj_A           67 LKPIGSGAQGIVCAAYDAVL-------DRNVAIKKLSRP   98 (464)
T ss_dssp             EEEEEECSSCEEEEEEETTT-------TEEEEEEEEESG
T ss_pred             EEEeecCCCeEEEEEEECCC-------CCEEEEEEECcc
Confidence            47899999999999987652       699999987653

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=91.15  E-value=0.36  Score=47.30  Aligned_cols=32  Identities=25%  Similarity=0.103  Sum_probs=27.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+.++.
T Consensus        67 ~~~lG~G~~g~V~~~~~~~~-------~~~vavK~~~~~   98 (371)
T 3q60_A           67 VEPLRVGDRSVVFLVRDVER-------LEDFALKVFTMG   98 (371)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------TEEEEEEEEECC
T ss_pred             eeeccCCCCEEEEEEEECCC-------CceeEEEEEEec
Confidence            57899999999999998652       699999999886

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=91.12  E-value=0.26  Score=50.62  Aligned_cols=32  Identities=16%  Similarity=0.162  Sum_probs=23.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+-+..       |+.||||+.+..
T Consensus        42 ~~~lG~G~~g~V~~~~~~~~-------~~~~aiK~~~~~   73 (494)
T 3lij_A           42 VKKLGSGAYGEVLLCRDKVT-------HVERAIKIIRKT   73 (494)
T ss_dssp             EEEEECC---EEEEEEETTT-------CCEEEEEEEEC-
T ss_pred             eeEEecCCCEEEEEEEECCC-------CcEEEEEEEecc
Confidence            46899999999999998752       689999998653

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=91.06  E-value=3.5  Score=45.35  Aligned_cols=30  Identities=13%  Similarity=0.059  Sum_probs=26.2

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      +.||.|+-|.||+|+-+.+       |+.||||+...
T Consensus       195 k~LG~G~fG~V~la~~~~t-------g~~~AiK~i~K  224 (689)
T 3v5w_A          195 RIIGRGGFGEVYGCRKADT-------GKMYAMKCLDK  224 (689)
T ss_dssp             EEEEECSSEEEEEEEETTT-------CCEEEEEEEEH
T ss_pred             EEEecccCeEEEEEEECCC-------CCEEEEEEEeH
Confidence            7899999999999998763       69999999753

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=91.02  E-value=0.36  Score=51.42  Aligned_cols=30  Identities=23%  Similarity=0.252  Sum_probs=25.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.||.|+-|.||+|+-+.+       |+.||||+.+
T Consensus       162 ~~~lG~G~fg~V~~~~~~~t-------g~~~AiK~i~  191 (573)
T 3uto_A          162 HEELGTGAFGVVHRVTERAT-------GNNFAAKFVM  191 (573)
T ss_dssp             EEEEEEETTEEEEEEEETTT-------CCEEEEEEEE
T ss_pred             EEEEeeccCeEEEEEEECCC-------CCEEEEEEEe
Confidence            35799999999999998763       6999999864

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=90.57  E-value=0.46  Score=51.07  Aligned_cols=33  Identities=18%  Similarity=0.017  Sum_probs=26.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|..|.||+|+.+..      +|+.||||+.++.
T Consensus        85 ~~~lg~G~~g~Vy~a~~~~~------~~~~vaiK~~~~~  117 (681)
T 2pzi_A           85 KGCIAHGGLGWIYLALDRNV------NGRPVVLKGLVHS  117 (681)
T ss_dssp             EEEEEEETTEEEEEEEEGGG------TTEEEEEEESCSS
T ss_pred             EEEEeeCCCeEEEEEEEcCC------CCcEEEEEEeCcc
Confidence            46899999999999998641      2699999988754

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=90.51  E-value=2  Score=43.83  Aligned_cols=106  Identities=14%  Similarity=0.142  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHhCCChHhh-ccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC-CcccchHhHHHHHHHHH
Q 012848          266 AYTKKTIERAFGRRLSEI-FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP-GVGESIRRDFVIINLAA  343 (455)
Q Consensus       266 ~~v~~vle~elG~~~~ei-F~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP-gV~~~i~~DL~il~~la  343 (455)
                      +.+++++.+-++..|..+ -+.++-+|++.|-..+||+.+..+........++.+++||-++ +..              
T Consensus        54 ~~a~~l~~~~l~~~w~~~~~~~~~v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~~~--------------  119 (429)
T 1nw1_A           54 ERAHMLCARFLGGAWKTVPLEHLRISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPETE--------------  119 (429)
T ss_dssp             HHHHHHHHHHHCTHHHHCCGGGEEEEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCCCH--------------
T ss_pred             HHHHHHHHHhccCCcCCCCccceEEEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCCCcH--------------
Confidence            456667766677767543 1235668999999999999987531000011257899998755 320              


Q ss_pred             HHHccccCccccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccc
Q 012848          344 KISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSR  421 (455)
Q Consensus       344 ~l~~~~P~l~~l~l~e~v~ef~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~  421 (455)
                                    ...              ..|++.+..+.+.     .+ .|+++.  +.++-++|||++|.+++.
T Consensus       120 --------------~~l--------------i~E~~~l~~L~~~-----g~-~P~l~~--~~~~g~v~e~l~G~~l~~  161 (429)
T 1nw1_A          120 --------------SHL--------------VAESVIFTLLSER-----HL-GPKLYG--IFSGGRLEEYIPSRPLSC  161 (429)
T ss_dssp             --------------HHH--------------HHHHHHHHHHHHT-----TS-SSCEEE--EETTEEEECCCCEEECCT
T ss_pred             --------------HHH--------------HHHHHHHHHHHhC-----CC-CCcEEE--EeCCCEEEEEeCCcccCh
Confidence                          000              1255555555431     23 478774  344669999999988764

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=90.46  E-value=0.56  Score=45.14  Aligned_cols=32  Identities=19%  Similarity=0.178  Sum_probs=17.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+...+
T Consensus        28 ~~~lg~G~~g~V~~~~~~~~-------~~~vavK~~~~~   59 (360)
T 3e3p_A           28 ERMAGQGTFGTVQLGKEKST-------GMSVAIKKVIQD   59 (360)
T ss_dssp             C----------CEEEEETTT-------CCEEEEEEEECC
T ss_pred             EEEEecCCCeEEEEEEECCC-------CCEEEEEEEecC
Confidence            57899999999999998752       699999987543

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=90.45  E-value=1.6  Score=41.69  Aligned_cols=100  Identities=13%  Similarity=0.032  Sum_probs=63.4

Q ss_pred             CCCCCHHHHHHHHHHHhCCChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHH
Q 012848          260 APEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII  339 (455)
Q Consensus       260 vpp~~~~~v~~vle~elG~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il  339 (455)
                      .+..+.+.+.+.+ +.+|-..+     -+-+|++ +....||+.+..+        |+++++|+-+|+...         
T Consensus         8 ~~~l~~~~i~~~l-~~~g~~~~-----~~~~~l~-g~~n~~y~v~~~~--------g~~~vlK~~~~~~~~---------   63 (328)
T 1zyl_A            8 FQTLHPDTIMDAL-FEHGIRVD-----SGLTPLN-SYENRVYQFQDED--------RRRFVVKFYRPERWT---------   63 (328)
T ss_dssp             CCCCCHHHHHHHH-HHTTCCCC-----SCCEEEC-CSSSEEEEECCTT--------CCCEEEEEECTTTSC---------
T ss_pred             CCCCCHHHHHHHH-HHcCCCCC-----ceEEeec-CcccceEEEEcCC--------CCEEEEEEcCCCCCC---------
Confidence            4556777888888 56775432     1235777 8889999876643        578999998887310         


Q ss_pred             HHHHHHHccccCccccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCC--------CeEEe
Q 012848          340 NLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHP--------AVLVE  411 (455)
Q Consensus       340 ~~la~l~~~~P~l~~l~l~e~v~ef~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~--------rVLVm  411 (455)
                                        .+             ++..|.+.++.+.+.     .+.+|+|+.. ...        .+++|
T Consensus        64 ------------------~~-------------~~~~E~~~~~~L~~~-----g~~vp~~~~~-~g~~~~~~~g~~~~l~  106 (328)
T 1zyl_A           64 ------------------AD-------------QILEEHQFALQLVND-----EVPVAAPVAF-NGQTLLNHQGFYFAVF  106 (328)
T ss_dssp             ------------------HH-------------HHHHHHHHHHHHHHT-----TCSBCCCCCB-TTBSCEEETTEEEEEE
T ss_pred             ------------------HH-------------HHHHHHHHHHHHHHc-----CCeecceeec-CCcEEEEECCEEEEEE
Confidence                              00             113355555555442     4668888753 222        25699


Q ss_pred             ecccCcccc
Q 012848          412 TYEQGECVS  420 (455)
Q Consensus       412 E~i~G~~i~  420 (455)
                      ||++|.++.
T Consensus       107 ~~i~G~~~~  115 (328)
T 1zyl_A          107 PSVGGRQFE  115 (328)
T ss_dssp             ECCCCEECC
T ss_pred             EecCCCCCC
Confidence            999999875

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=90.40  E-value=0.71  Score=45.97  Aligned_cols=31  Identities=16%  Similarity=0.113  Sum_probs=26.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.++        |+.||||+....
T Consensus        61 ~~~LG~G~fg~Vy~~~~~~--------~~~vaiK~~~~~   91 (390)
T 2zmd_A           61 LKQIGSGGSSKVFQVLNEK--------KQIYAIKYVNLE   91 (390)
T ss_dssp             EEEEECCSSEEEEEEECTT--------CCEEEEEEEECT
T ss_pred             EEEEccCCCeEEEEEEcCC--------CCEEEEEEEecc
Confidence            3689999999999998754        689999987654

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=90.35  E-value=1.4  Score=47.54  Aligned_cols=34  Identities=18%  Similarity=0.221  Sum_probs=26.6

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.||.|+-|.||+|+.+..    ...+..||||+.+..
T Consensus       396 ~~LG~G~fG~Vy~a~~~~~----~~~~~~vaiK~~~~~  429 (656)
T 2j0j_A          396 RCIGEGQFGDVHQGIYMSP----ENPAMAVAIKTCKNC  429 (656)
T ss_dssp             EEEECCSSCCEEEEEECCS----SSCCEEEEEEECSST
T ss_pred             eEEeeCCCEEEEEEEEecC----CCccEEEEEEEeccc
Confidence            5699999999999998652    123688999987654

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=90.31  E-value=0.9  Score=43.28  Aligned_cols=32  Identities=19%  Similarity=0.138  Sum_probs=26.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|+||+|+.+.+       |+.||||+....
T Consensus        62 ~~~LG~G~~g~Vy~~~~~~~-------~~~vavK~~~~~   93 (311)
T 3p1a_A           62 LSRLGHGSYGEVFKVRSKED-------GRLYAVKRSMSP   93 (311)
T ss_dssp             EEEEEEETTEEEEEEEETTT-------SCEEEEEEESSS
T ss_pred             eheeccCCCeEEEEEEECCC-------CeEEEEEEeccc
Confidence            35799999999999999752       699999986654

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=90.22  E-value=0.88  Score=42.41  Aligned_cols=30  Identities=17%  Similarity=0.046  Sum_probs=25.2

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      +.||.|+-|.||+|+...       .|..||||+...
T Consensus        32 ~~lg~G~~g~Vy~~~~~~-------~~~~va~k~~~~   61 (290)
T 1t4h_A           32 IEIGRGSFKTVYKGLDTE-------TTVEVAWCELQD   61 (290)
T ss_dssp             EEEEECSSEEEEEEEETT-------TCCEEEEEEEEG
T ss_pred             eeccCCCCeEEEEeEecC-------CceEEEEEEecc
Confidence            469999999999998865       268999998764

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=90.03  E-value=1.3  Score=41.95  Aligned_cols=31  Identities=16%  Similarity=0.113  Sum_probs=26.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.++        |+.||||+.+..
T Consensus        33 ~~~lg~G~~g~Vy~~~~~~--------~~~vavK~~~~~   63 (313)
T 3cek_A           33 LKQIGSGGSSKVFQVLNEK--------KQIYAIKYVNLE   63 (313)
T ss_dssp             EEEEECCSSEEEEEEECTT--------CCEEEEEEEECS
T ss_pred             EEEecCCCCEEEEEEEcCC--------CcEEEEEEeccc
Confidence            3689999999999998754        689999998654

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=89.97  E-value=0.33  Score=47.13  Aligned_cols=35  Identities=20%  Similarity=0.077  Sum_probs=22.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+..  +  ..++.||||+...+
T Consensus        42 ~~~lg~G~~g~Vy~~~~~~~--~--~~~~~~aiK~~~~~   76 (345)
T 2v62_A           42 GKKIGSGGFGLIYLAFPTNK--P--EKDARHVVKVEYQE   76 (345)
T ss_dssp             EEEC------CEEEEEESSS--C--GGGCCEEEEEEECC
T ss_pred             EeeEeecCCeEEEEEEecCC--C--CccceEEEEeeecC
Confidence            47899999999999998741  1  12689999998876

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=89.89  E-value=0.77  Score=45.09  Aligned_cols=32  Identities=25%  Similarity=0.120  Sum_probs=26.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|+||+|+-+.       .|+.||||+.+..
T Consensus        30 ~~~lG~G~~g~V~~~~~~~-------~~~~vavK~~~~~   61 (371)
T 2xrw_A           30 LKPIGSGAQGIVCAAYDAI-------LERNVAIKKLSRP   61 (371)
T ss_dssp             EEEEEECSSEEEEEEEETT-------TTEEEEEEEEECT
T ss_pred             eeeeEecCCEEEEEEEECC-------CCceEEEEEeccc
Confidence            4789999999999998764       2699999988654

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=89.68  E-value=0.88  Score=46.62  Aligned_cols=32  Identities=13%  Similarity=0.078  Sum_probs=24.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+-+.+       |+.||+|+....
T Consensus        16 ~~~LG~G~fg~V~~~~~~~~-------~~~~a~K~i~~~   47 (444)
T 3soa_A           16 FEELGKGAFSVVRRCVKVLA-------GQEYAAMIINTK   47 (444)
T ss_dssp             EEEEEEC--CEEEEEEETTT-------TEEEEEEEEESC
T ss_pred             EEEeccCCCeEEEEEEECCC-------CcEEEEEEEEcc
Confidence            46799999999999987652       699999987654

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=89.10  E-value=0.91  Score=45.63  Aligned_cols=31  Identities=16%  Similarity=0.096  Sum_probs=26.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+.+.
T Consensus        20 ~~~LG~G~fG~V~~~~~~~~-------~~~~AiK~~~~   50 (384)
T 4fr4_A           20 LRAIGKGSFGKVCIVQKNDT-------KKMYAMKYMNK   50 (384)
T ss_dssp             EEEEECCTTCCEEEEEETTT-------CCEEEEEEEEH
T ss_pred             EEEEeeCCCeEEEEEEECCC-------CCEEEEEEEeh
Confidence            47899999999999998752       68999998753

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=88.33  E-value=0.38  Score=46.50  Aligned_cols=44  Identities=20%  Similarity=0.187  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHhCCCCCeEeCcccCC---CCCCCeEEeecccCccccc
Q 012848          374 LAREAAHLSRFIYNFRRWKDVSFPKPVYP---LVHPAVLVETYEQGECVSR  421 (455)
Q Consensus       374 fr~EA~nl~rf~~~f~~~~~V~vP~~~~~---lst~rVLVmE~i~G~~i~~  421 (455)
                      +..|++.++.....    ..+.||+|+.-   -.....++|||++|.++.+
T Consensus        56 ~~~E~~~L~~L~~~----~~v~VP~~~~~~~~~~g~~~~v~e~i~G~~l~~  102 (306)
T 3tdw_A           56 LNKEIQLLPLLVGC----VKVNIPQYVYIGKRSDGNPFVGYRKVQGQILGE  102 (306)
T ss_dssp             HHHHHHHHHHHTTT----CSSBCCCEEEEEECTTSCEEEEEECCCSEECHH
T ss_pred             HHHHHHHHHHHHhc----CCCCCCCeEeecccCCCceEEEEeccCCeECch
Confidence            47788777766542    35778988732   1234689999999999875

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=87.75  E-value=1.4  Score=44.88  Aligned_cols=32  Identities=22%  Similarity=0.165  Sum_probs=26.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|+||+|+.+.+       |+.||||+....
T Consensus        31 ~~~lg~G~~g~V~~~~~~~~-------~~~~avK~~~~~   62 (484)
T 3nyv_A           31 QRVLGKGSFGEVILCKDKIT-------GQECAVKVISKR   62 (484)
T ss_dssp             EEEEEEETTEEEEEEEETTT-------CCEEEEEEEETT
T ss_pred             eeEEecCCCEEEEEEEECCC-------CCEEEEEEEEhh
Confidence            56899999999999998752       699999997543

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=87.55  E-value=1.9  Score=41.09  Aligned_cols=100  Identities=9%  Similarity=0.067  Sum_probs=60.7

Q ss_pred             CCCCHHHHHHHHHHHhCCChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHH
Q 012848          261 PEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIIN  340 (455)
Q Consensus       261 pp~~~~~v~~vle~elG~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~  340 (455)
                      ++.+.+++.+.+++ +|.  .++   .+-+|++.|...+||+.+..+        | .+++|+-+|+..           
T Consensus         5 ~~~~~~~l~~~l~~-~~~--~~~---~~~~~i~~G~~n~~~~v~~~~--------g-~~vlk~~~~~~~-----------   58 (322)
T 2ppq_A            5 TDITEDELRNFLTQ-YDV--GSL---TSYKGIAEGVENSNFLLHTTK--------D-PLILTLYEKRVE-----------   58 (322)
T ss_dssp             CCCCHHHHHHHHTT-BCC--CCE---EEEEEECC---EEEEEEEESS--------C-CEEEEEECC--------------
T ss_pred             ccCCHHHHHHHHHh-CCC--Ccc---eEeeccCCCcccceEEEEeCC--------c-cEEEEEeCCCCC-----------
Confidence            45677778888765 664  111   245788999999999988642        3 689999887410           


Q ss_pred             HHHHHHccccCccccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCC--------CCCCeEEee
Q 012848          341 LAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPL--------VHPAVLVET  412 (455)
Q Consensus       341 ~la~l~~~~P~l~~l~l~e~v~ef~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~l--------st~rVLVmE  412 (455)
                               +                     -++..|.+.++.+++.     .+.+|+|+...        ....+++||
T Consensus        59 ---------~---------------------~~l~~e~~~l~~L~~~-----g~~vP~~~~~~~g~~~~~~~g~~~~l~~  103 (322)
T 2ppq_A           59 ---------K---------------------NDLPFFLGLMQHLAAK-----GLSCPLPLPRKDGELLGELSGRPAALIS  103 (322)
T ss_dssp             ---------C---------------------CHHHHHHHHHHHHHHT-----TCCCCCBCCBTTCCSCEEETTEEEEEEE
T ss_pred             ---------H---------------------HHHHHHHHHHHHHHHC-----CCCCCcccCCCCCCEEEEECCEEEEEEE
Confidence                     0                     0113344444444442     46688888532        234578999


Q ss_pred             cccCccccc
Q 012848          413 YEQGECVSR  421 (455)
Q Consensus       413 ~i~G~~i~~  421 (455)
                      |++|.++..
T Consensus       104 ~l~G~~~~~  112 (322)
T 2ppq_A          104 FLEGMWLRK  112 (322)
T ss_dssp             CCCCBCCSS
T ss_pred             eCCCcCCCC
Confidence            999998764

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=87.52  E-value=2.6  Score=41.28  Aligned_cols=87  Identities=13%  Similarity=0.104  Sum_probs=54.1

Q ss_pred             ccccccccccCcceEEEeEecccCCC-CCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHH
Q 012848          286 GFEEAPVASGSIAQVHRASLRFRYPG-QKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQF  364 (455)
Q Consensus       286 ~fd~~PiASASIAQVHrA~Lk~~~~G-~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef  364 (455)
                      .++-+|++.|...++|+-+..+.... ...+++.+++|+-+++....                                 
T Consensus        35 ~~~~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~~---------------------------------   81 (369)
T 3c5i_A           35 NLRVKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDEL---------------------------------   81 (369)
T ss_dssp             GEEEEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGGT---------------------------------
T ss_pred             ceEEEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccce---------------------------------
Confidence            35678999999999999987531000 00013689999887763211                                 


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCcccc
Q 012848          365 AVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVS  420 (455)
Q Consensus       365 ~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~  420 (455)
                             .|...|++.++...+.     .+ +|+++.  +.+..++|||++|.++.
T Consensus        82 -------~~~~~E~~~l~~L~~~-----g~-~P~~~~--~~~~~~v~e~i~G~~l~  122 (369)
T 3c5i_A           82 -------YNTISEFEVYKTMSKY-----KI-APQLLN--TFNGGRIEEWLYGDPLR  122 (369)
T ss_dssp             -------SCHHHHHHHHHHHHHT-----TS-SCCEEE--EETTEEEEECCCSEECC
T ss_pred             -------ecHHHHHHHHHHHHhc-----CC-CCceEE--ecCCcEEEEEecCCcCC
Confidence                   1335677777766542     35 888884  33678999999998875

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=87.37  E-value=2.1  Score=40.94  Aligned_cols=36  Identities=22%  Similarity=0.184  Sum_probs=22.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+...+  |+ .-..+||||+.++.
T Consensus        20 ~~~lG~G~~g~Vy~~~~~~~--~~-~~~~~vaiK~~~~~   55 (327)
T 3poz_A           20 IKVLGSGAFGTVYKGLWIPE--GE-KVKIPVAIKELREA   55 (327)
T ss_dssp             EEEEEEETTEEEEEEEECC-------CCEEEEEEEC---
T ss_pred             ceEEeeCCCeEEEEEEEcCC--Cc-eEEEEEEEeecccc
Confidence            47899999999999997642  21 11245688876543

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=86.94  E-value=0.73  Score=43.97  Aligned_cols=31  Identities=19%  Similarity=0.300  Sum_probs=24.8

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeE--EEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIV--VAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~--VAVKVqrP  326 (455)
                      .+.||.|+-|.||+|+.+.+       |+.  ||||+.+.
T Consensus        30 ~~~lg~G~~g~Vy~~~~~~~-------~~~~~v~iK~~~~   62 (327)
T 1fvr_A           30 QDVIGEGNFGQVLKARIKKD-------GLRMDAAIKRMKE   62 (327)
T ss_dssp             EEEEECGGGCEEEEEEEEET-------TEEEEEEEEEEEC
T ss_pred             eeeeecCCCceEEEEEEccC-------Ccccceeeeeecc
Confidence            47899999999999998762       464  48887764

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=86.82  E-value=0.95  Score=42.98  Aligned_cols=46  Identities=11%  Similarity=0.060  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHhCCChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          266 AYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       266 ~~v~~vle~elG~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      +.+.+.+.+.+|.++      .+-+|++.|+.+.||+.+..+         ..+++|+.++
T Consensus        20 ~~l~~~l~~~~~~~~------~~~~~l~gG~~n~~~~v~~~~---------~~~vlk~~~~   65 (346)
T 2q83_A           20 TELAENVLQGWDVQA------EKIDVIQGNQMALVWKVHTDS---------GAVCLKRIHR   65 (346)
T ss_dssp             HHHHHHHGGGSCCCC------CEEEECC----CEEEEEEETT---------EEEEEEEECS
T ss_pred             HHHHHHHHHHcCCce------EEeeeccccccCcEEEEEeCC---------CCEEEEecCC
Confidence            445566666666432      234688788999999988742         3599999887

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=86.52  E-value=1.2  Score=44.26  Aligned_cols=60  Identities=18%  Similarity=0.264  Sum_probs=39.7

Q ss_pred             CCChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC-cccchHhHHHHHHHH
Q 012848          277 GRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG-VGESIRRDFVIINLA  342 (455)
Q Consensus       277 G~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg-V~~~i~~DL~il~~l  342 (455)
                      ...+++.|+ ++.+.||.|+-|.||+|+.++..     .|+.||||+.... ..+.+.+.+.+|+.+
T Consensus        15 ~~~~~~~y~-~~g~~lG~G~~g~Vy~~~~~~~~-----~~~~vaiK~~~~~~~~~~~~~E~~~l~~l   75 (405)
T 3rgf_A           15 RERVEDLFE-YEGCKVGRGTYGHVYKAKRKDGK-----DDKDYALKQIEGTGISMSACREIALLREL   75 (405)
T ss_dssp             CCCHHHHEE-CSSCCCC-----EEEEEEESSSS-----CCCCEEEEECSSSSCCHHHHHHHHHHHHC
T ss_pred             hhhhhhhhh-hcCcEeeecCCeEEEEEEEccCC-----CCeEEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            457888886 66778999999999999987521     2689999988753 444566666666654

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=86.29  E-value=1.7  Score=43.85  Aligned_cols=32  Identities=25%  Similarity=0.196  Sum_probs=19.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+....
T Consensus        58 ~~~lG~G~~g~V~~~~~~~~-------~~~vaiK~i~~~   89 (458)
T 3rp9_A           58 RHLIGTGSYGHVCEAYDKLE-------KRVVAIKKILRV   89 (458)
T ss_dssp             CCC-------CEEEEEECC---------CEEEEEEECST
T ss_pred             eeEeeecCCeEEEEEEECCC-------CcEEEEEEechh
Confidence            57899999999999998752       699999987653

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=85.89  E-value=6.2  Score=39.83  Aligned_cols=109  Identities=16%  Similarity=0.134  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHhCCChHhh-ccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHH
Q 012848          265 FAYTKKTIERAFGRRLSEI-FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAA  343 (455)
Q Consensus       265 ~~~v~~vle~elG~~~~ei-F~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la  343 (455)
                      .+.+.+++.+-++..|.++ -+.++-+++..|--.++|+.+..+..+....+++++++|+-.++.               
T Consensus        30 ~~~~~~~~~~~l~~~W~~~~~~~l~v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~---------------   94 (379)
T 3feg_A           30 ERRAYQWCREYLGGAWRRVQPEELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAIL---------------   94 (379)
T ss_dssp             HHHHHHHHHHHHCGGGGGCCGGGCCCEEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC------------------
T ss_pred             HHHHHHHHHHHccCcCCCCCcCceEEEEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCcc---------------
Confidence            3456677777787777664 246778899999999999988753111011235789999842211               


Q ss_pred             HHHccccCccccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccc
Q 012848          344 KISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSR  421 (455)
Q Consensus       344 ~l~~~~P~l~~l~l~e~v~ef~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~  421 (455)
                            +     ..              .|..+|+++++.+.+.     .+ .|+++.  +.++-++|||++|..++.
T Consensus        95 ------~-----~~--------------~~~~rE~~vl~~L~~~-----gv-~P~ll~--~~~~g~v~e~i~G~~l~~  139 (379)
T 3feg_A           95 ------Q-----GV--------------DSLVLESVMFAILAER-----SL-GPQLYG--VFPEGRLEQYIPSRPLKT  139 (379)
T ss_dssp             ------C-----CH--------------HHHHHHHHHHHHHHHT-----TS-SCCEEE--EETTEEEEECCSEEECCG
T ss_pred             ------c-----hH--------------HHHHHHHHHHHHHHhc-----CC-CCeEEE--EcCCccEEEEecCccCCh
Confidence                  0     00              1335788888877653     33 488874  344569999999988763

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=84.62  E-value=0.87  Score=48.35  Aligned_cols=73  Identities=15%  Similarity=0.018  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHhCCCCCeEeCcccCCC--CCCCeEEeecccCccccchhHHhhhchhhHHHHHHHHHHHHHHhhhcc
Q 012848          374 LAREAAHLSRFIYNFRRWKDVSFPKPVYPL--VHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVP  451 (455)
Q Consensus       374 fr~EA~nl~rf~~~f~~~~~V~vP~~~~~l--st~rVLVmE~i~G~~i~~~~~~l~~~~~~~~~LA~~g~~aflkmlf~d  451 (455)
                      |++|++-++++.      ....||+.+.-.  ...--|||||++|..+.+++....  .....++...++++ |.-+-..
T Consensus       288 ~~~E~~~l~~~~------~~~~i~~~~~~~ed~~~~yLVMEyv~G~~L~d~i~~~~--~l~~~~I~~QIl~A-L~ylH~~  358 (569)
T 4azs_A          288 LHNEIKFLTQPP------AGFDAPAVLAHGENAQSGWLVMEKLPGRLLSDMLAAGE--EIDREKILGSLLRS-LAALEKQ  358 (569)
T ss_dssp             HHHHHHHHHSCC------TTCCCCCEEEEEECSSEEEEEEECCCSEEHHHHHHTTC--CCCHHHHHHHHHHH-HHHHHHT
T ss_pred             HHHHHHHHHhcC------CCCCeeEEEEEEEECCEEEEEEecCCCCcHHHHHHhCC--CCCHHHHHHHHHHH-HHHHHHC
Confidence            577777776542      234577766433  344569999999999998875422  12234555555553 3444555


Q ss_pred             CCCC
Q 012848          452 YLNN  455 (455)
Q Consensus       452 gFv~  455 (455)
                      |.||
T Consensus       359 GIIH  362 (569)
T 4azs_A          359 GFWH  362 (569)
T ss_dssp             TCEE
T ss_pred             Ccee
Confidence            6555

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=84.47  E-value=1.8  Score=41.27  Aligned_cols=36  Identities=25%  Similarity=0.259  Sum_probs=25.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+.+  | ..-..+||+|+....
T Consensus        18 ~~~lG~G~~g~Vy~~~~~~~--~-~~~~~kv~~K~~~~~   53 (325)
T 3kex_A           18 LKVLGSGVFGTVHKGVWIPE--G-ESIKIPVCIKVIEDK   53 (325)
T ss_dssp             EEEEECCSSCEEEEEEECCT--T-CSCCEEEEEEEECCT
T ss_pred             eeeeeecCCceEEEEEEcCC--C-ceEEEEEEEEecccc
Confidence            47899999999999998652  2 111245888877543

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=84.42  E-value=0.45  Score=44.89  Aligned_cols=29  Identities=17%  Similarity=0.172  Sum_probs=24.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|+||+|+.+          .+||||+.+..
T Consensus        38 ~~~lg~G~~g~V~~~~~~----------~~~avk~~~~~   66 (319)
T 2y4i_B           38 GELIGKGRFGQVYHGRWH----------GEVAIRLIDIE   66 (319)
T ss_dssp             CCBCCCSSSSEEEEEEES----------SSEEEEECCCC
T ss_pred             eeEeccCCceEEEEEEEc----------CeEEEEEeecC
Confidence            578999999999999874          35999998764

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=83.64  E-value=0.7  Score=45.73  Aligned_cols=31  Identities=19%  Similarity=0.087  Sum_probs=26.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|+||+|+-+.+       |+.||||+...
T Consensus        37 ~~~lG~G~fg~V~~a~~~~~-------~~~~AiK~i~k   67 (311)
T 4aw0_A           37 GKILGEGSFSTVVLARELAT-------SREYAIKILEK   67 (311)
T ss_dssp             EEEEEEETTEEEEEEEETTT-------CCEEEEEEEEH
T ss_pred             EEEEecccCeEEEEEEECCC-------CCEEEEEEEEH
Confidence            46899999999999998752       69999999763

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=81.15  E-value=1.4  Score=42.01  Aligned_cols=48  Identities=17%  Similarity=0.198  Sum_probs=37.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc---------ccchHhHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV---------GESIRRDFVIINLAA  343 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV---------~~~i~~DL~il~~la  343 (455)
                      .+.||.|+-|.||+|+.+.       +|+.||||+.+++-         .+.+..++.+++.+.
T Consensus        48 ~~~lg~G~~g~Vy~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  104 (320)
T 3a99_A           48 GPLLGSGGFGSVYSGIRVS-------DNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVS  104 (320)
T ss_dssp             EEECSSSSSCEEEEEEETT-------TTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHC
T ss_pred             EEEEeeCCCeEEEEEEECC-------CCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhc
Confidence            4689999999999999765       26999999987753         245666777777653

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=80.77  E-value=6.5  Score=37.63  Aligned_cols=36  Identities=22%  Similarity=0.184  Sum_probs=24.8

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|.||+|+.+.+  |+ .-..+||+|..+..
T Consensus        20 ~~~lG~G~~g~Vy~~~~~~~--~~-~~~~kv~iK~~~~~   55 (327)
T 3lzb_A           20 IKVLGSGAFGTVYKGLWIPE--GE-KVKIPVAIKELREA   55 (327)
T ss_dssp             EEEEEECSSEEEEEEEECCT--TC-SCCEEEEEEEECCC
T ss_pred             EEEeeeCCCeEEEEEEEcCC--Cc-eEEEEEEEEeeccc
Confidence            47899999999999998652  21 11235677776544

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=80.56  E-value=1.1  Score=44.23  Aligned_cols=46  Identities=15%  Similarity=0.034  Sum_probs=34.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLA  342 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~l  342 (455)
                      .+.||.|+-|.||+|+.+.+       |+.||||+...+.. ...+++.+|+.+
T Consensus        12 ~~~lG~G~fg~V~~a~~~~~-------~~~vAiK~~~~~~~-~~~~E~~il~~l   57 (383)
T 3eb0_A           12 GKTLGTGSFGIVCEVFDIES-------GKRFALKKVLQDPR-YKNRELDIMKVL   57 (383)
T ss_dssp             EEEEECC-CEEEEEEEETTT-------CCEEEEEEEECCTT-SCCHHHHHHTTC
T ss_pred             EEEEEeccCEEEEEEEECCC-------CCEEEEEEEecCcc-hHHHHHHHHHHc
Confidence            47899999999999998652       69999999877643 344666666544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	455
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	98.62
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	97.09
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	96.91
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	96.86
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	96.83
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	96.83
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	96.68
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	96.66
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	96.64
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	96.6
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	96.6
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	96.56
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	96.46
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	96.39
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	96.35
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	96.35
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	96.29
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	96.25
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	96.2
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	96.12
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	96.08
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	96.02
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	96.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	95.96
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	95.93
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	95.88
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	95.71
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	95.68
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	95.67
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	95.52
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	95.5
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	95.48
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	95.44
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	95.39
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	95.38
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	95.37
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	95.36
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	95.3
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	95.29
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	95.27
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	95.26
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	95.26
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	95.18
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	95.09
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	95.05
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	94.69
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	94.44
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	94.06
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	93.86
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	93.55
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	93.15
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	92.73
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	92.45
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	91.33
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	91.29
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	91.28
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	91.01
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	90.33
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	90.24
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	89.93
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	88.82
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	87.57
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	87.24
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	86.46
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	86.16
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	86.15
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	85.33
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	83.01

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.62  E-value=2.5e-08  Score=88.85  Aligned_cols=120  Identities=9%  Similarity=0.005  Sum_probs=72.4

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCcc-ccCHHHHHHHHHHHH
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVK-WLRLDESVQQFAVFM  368 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~-~l~l~e~v~ef~~~l  368 (455)
                      ++||+|+-|+||+|+..+        |++|||||+||+....-              . ....+ .... ..      ..
T Consensus         6 ~~IG~G~~g~Vy~a~~~~--------g~~vAvKi~r~~~~~~~--------------~-~~~~~~~~~~-~~------~~   55 (191)
T d1zara2           6 KLMGEGKESAVFNCYSEK--------FGECVVKFHKVGHTSFK--------------K-VKEKRDYGDL-HF------SV   55 (191)
T ss_dssp             EEEEECSSEEEEEEEETT--------TEEEEEEEECC--------------------C-CCC--------CH------HH
T ss_pred             CEeeeCcceEEEEEECCC--------CCEEEEEEEecccchhh--------------h-hhhhhhhccH-HH------HH
Confidence            689999999999999864        69999999999864210              0 00000 0000 00      00


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccchhHHhhhchhhHHHHHHHHHHHHHHhh
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKML  448 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~l~~~~~~~~~LA~~g~~aflkml  448 (455)
                      ........|..++.++.       .+.+|+++  .+.+.+|+|||++|.+..++..      .....++..++++ ++.|
T Consensus        56 ~~~~~~~~e~~~l~~l~-------~~~v~~~~--~~~~~~lvme~~~~~~~~~l~~------~~~~~i~~ql~~~-l~~l  119 (191)
T d1zara2          56 LAIRSARNEFRALQKLQ-------GLAVPKVY--AWEGNAVLMELIDAKELYRVRV------ENPDEVLDMILEE-VAKF  119 (191)
T ss_dssp             HHHHHHHHHHHHHHHTT-------TSSSCCEE--EEETTEEEEECCCCEEGGGCCC------SCHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHcc-------CCCcceEE--EecCCEEEEEeeccccccchhh------HHHHHHHHHHHHH-HHHH
Confidence            11223356777776552       45577776  4567899999999998766421      1234566666554 5667


Q ss_pred             hccCCCC
Q 012848          449 LVPYLNN  455 (455)
Q Consensus       449 f~dgFv~  455 (455)
                      ...|++|
T Consensus       120 H~~giiH  126 (191)
T d1zara2         120 YHRGIVH  126 (191)
T ss_dssp             HHTTEEC
T ss_pred             hhCCEEE
Confidence            7888887

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.0011  Score=61.00  Aligned_cols=111  Identities=17%  Similarity=0.183  Sum_probs=66.5

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHH
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMM  369 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~  369 (455)
                      +-||.|+-|+||+|++++        |+.||||+.+.+-..                           .   +       
T Consensus        11 ~~iG~G~fg~Vy~~~~~~--------~~~vAvK~i~~~~~~---------------------------~---~-------   45 (263)
T d1sm2a_          11 QEIGSGQFGLVHLGYWLN--------KDKVAIKTIREGAMS---------------------------E---E-------   45 (263)
T ss_dssp             EEEECCSSCCEEEEEETT--------TEEEEEEECCSSSSC---------------------------H---H-------
T ss_pred             EEEeeCCCeEEEEEEECC--------CCEEEEEEECCCcCc---------------------------H---H-------
Confidence            569999999999999975        588999997654210                           0   0       


Q ss_pred             HhcCHHHHHHHHHHHHHHhCCCCCe-EeCcccCCCCCCCeEEeecccCccccchhHHhhhc--hhhHHHHHHHHHHHHHH
Q 012848          370 SQVDLAREAAHLSRFIYNFRRWKDV-SFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGH--ERLKSALAHIGTHALLK  446 (455)
Q Consensus       370 ~ELDfr~EA~nl~rf~~~f~~~~~V-~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~l~~~--~~~~~~LA~~g~~aflk  446 (455)
                         +|.+|++.+.++.     +++| .+=.+ ......-.|||||++|-.+.+++......  ......++..++++ ++
T Consensus        46 ---~~~~E~~~l~~l~-----HpnIv~~~g~-~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~i~~qia~g-l~  115 (263)
T d1sm2a_          46 ---DFIEEAEVMMKLS-----HPKLVQLYGV-CLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEG-MA  115 (263)
T ss_dssp             ---HHHHHHHHHHHCC-----CTTBCCEEEE-ECSSSSCEEEEECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHH-HH
T ss_pred             ---HHHHHHHHHHhcC-----CCCcccccce-eccCCceEEEEEecCCCcHHHHhhccccCCCHHHHHHHHHHHHHH-HH
Confidence               2456777776652     2321 11111 12235677999999999998875432111  11223455555544 33


Q ss_pred             hhhccCCCC
Q 012848          447 MLLVPYLNN  455 (455)
Q Consensus       447 mlf~dgFv~  455 (455)
                      -+-..|.+|
T Consensus       116 ~lH~~~iiH  124 (263)
T d1sm2a_         116 YLEEACVIH  124 (263)
T ss_dssp             HHHHTTCCC
T ss_pred             hhhccceee
Confidence            355666666

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.91  E-value=0.0015  Score=61.01  Aligned_cols=94  Identities=18%  Similarity=0.085  Sum_probs=56.8

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+-||.|+-|+||+|+-+.+       |+.||||+.+..-....                       .. +.+++..+  
T Consensus         8 ~~~iG~G~~g~V~~~~~~~~-------~~~~AvK~i~~~~~~~~-----------------------~~-~~~~~~~~--   54 (277)
T d1phka_           8 KEILGRGVSSVVRRCIHKPT-------CKEYAVKIIDVTGGGSF-----------------------SA-EEVQELRE--   54 (277)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------TEEEEEEEEETTCSTTC-----------------------CH-HHHHHHHH--
T ss_pred             ceEEecCcCeEEEEEEECCC-------CCEEEEEEEecccccch-----------------------hH-HHHHHHHH--
Confidence            57899999999999997652       69999999775422111                       10 11111111  


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCC--CeEEeecccCccccchhHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHP--AVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~--rVLVmE~i~G~~i~~~~~~  425 (455)
                          ++.+|++.+.++..    .++  |.+.+.-+.++  -.|||||++|..+.+++..
T Consensus        55 ----~~~~E~~~l~~l~~----hpn--Iv~~~~~~~~~~~~~ivmE~~~~g~L~~~l~~  103 (277)
T d1phka_          55 ----ATLKEVDILRKVSG----HPN--IIQLKDTYETNTFFFLVFDLMKKGELFDYLTE  103 (277)
T ss_dssp             ----HHHHHHHHHHHHTT----CTT--BCCEEEEEECSSEEEEEEECCTTCBHHHHHHH
T ss_pred             ----HHHHHHHHHHHhcC----CCC--eEEEEeecccCcceEEEEEcCCCchHHHHHHh
Confidence                23457777776642    222  22222212222  2699999999999887754

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.86  E-value=0.0012  Score=60.85  Aligned_cols=33  Identities=27%  Similarity=0.166  Sum_probs=27.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+.||.|+-|.||+|+-+.+       |+.||||+.+++.
T Consensus        12 ~~~lG~G~fg~Vy~a~~~~~-------~~~vAiK~i~~~~   44 (277)
T d1o6ya_          12 GEILGFGGMSEVHLARDLRL-------HRDVAVKVLRADL   44 (277)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------TEEEEEEEECSTT
T ss_pred             eEEEeeCCCeEEEEEEECCC-------CCEEEEEEEchhh
Confidence            36899999999999997652       6999999988763

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.0017  Score=60.87  Aligned_cols=93  Identities=18%  Similarity=0.185  Sum_probs=51.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|+-|+||+|+..........++..||||+.+++..+.-                                    
T Consensus        18 ~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~------------------------------------   61 (299)
T d1fgka_          18 GKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKD------------------------------------   61 (299)
T ss_dssp             EEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHH------------------------------------
T ss_pred             eeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHH------------------------------------
Confidence            36899999999999998642111223457899999987643210                                    


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCe-EeCcccCCCCCCCeEEeecccCccccchhH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDV-SFPKPVYPLVHPAVLVETYEQGECVSRYVD  424 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V-~vP~~~~~lst~rVLVmE~i~G~~i~~~~~  424 (455)
                        .-++.+|...+.++.    +.++| .+-..+ .-...-.+||||++|-.+.+++.
T Consensus        62 --~~~~~~e~~~l~~~~----~HpnIv~~~~~~-~~~~~~~~v~e~~~~g~l~~~i~  111 (299)
T d1fgka_          62 --LSDLISEMEMMKMIG----KHKNIINLLGAC-TQDGPLYVIVEYASKGNLREYLQ  111 (299)
T ss_dssp             --HHHHHHHHHHHHHHC----CCTTBCCEEEEE-CSSSSCEEEECCCTTCBHHHHHH
T ss_pred             --HHHHHHHHHHHHHhc----CCCeEEeccccc-ccCCeEEEEEEccCCCcHHHHHH
Confidence              112455555555542    23332 221222 12345678999999999988764

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.0012  Score=61.51  Aligned_cols=91  Identities=15%  Similarity=0.185  Sum_probs=55.1

Q ss_pred             ccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHH
Q 012848          286 GFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFA  365 (455)
Q Consensus       286 ~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~  365 (455)
                      .+|++-||.|+-|+||+|++++.     ..++.||||+.+.+..+                           ++..+   
T Consensus         9 ~le~k~iG~G~fG~Vy~~~~~~~-----~~~~~vAvK~~~~~~~~---------------------------~~~~~---   53 (277)
T d1xbba_           9 TLEDKELGSGNFGTVKKGYYQMK-----KVVKTVAVKILKNEAND---------------------------PALKD---   53 (277)
T ss_dssp             EEEEEEEEECSSEEEEEEEEECS-----SSEEEEEEEEEC--------------------------------CHHHH---
T ss_pred             eecCCCcccCCCeEEEEEEEccC-----CcCeEEEEEEEChhhCC---------------------------HHHHH---
Confidence            46778899999999999998752     12589999998643211                           01111   


Q ss_pred             HHHHHhcCHHHHHHHHHHHHHHhCCCCCe-EeCcccCCCCCCCeEEeecccCccccchhHH
Q 012848          366 VFMMSQVDLAREAAHLSRFIYNFRRWKDV-SFPKPVYPLVHPAVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       366 ~~l~~ELDfr~EA~nl~rf~~~f~~~~~V-~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~  425 (455)
                             +|.+|++-+.++.     +++| .+=.+.  ....-.|||||++|-.+.+++..
T Consensus        54 -------~~~~E~~il~~l~-----HpnIv~~~g~~--~~~~~~lvmE~~~~g~L~~~l~~  100 (277)
T d1xbba_          54 -------ELLAEANVMQQLD-----NPYIVRMIGIC--EAESWMLVMEMAELGPLNKYLQQ  100 (277)
T ss_dssp             -------HHHHHHHHHHTCC-----CTTBCCEEEEE--ESSSEEEEEECCTTEEHHHHHHH
T ss_pred             -------HHHHHHHHHHhCC-----CCCCceEEEEe--ccCCEEEEEEcCCCCcHHHHHhh
Confidence                   2356666665542     2332 111111  12344799999999999887653

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.68  E-value=0.0038  Score=58.23  Aligned_cols=113  Identities=14%  Similarity=0.150  Sum_probs=64.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|+-|+||+|+.+.+       |+.||||+.+.+-.+                          .    +      
T Consensus        22 ~~~iG~G~fg~Vy~a~~~~~-------~~~vAvK~i~~~~~~--------------------------~----~------   58 (287)
T d1opja_          22 KHKLGGGQYGEVYEGVWKKY-------SLTVAVKTLKEDTME--------------------------V----E------   58 (287)
T ss_dssp             EEETTTTTTSSEEEEEEGGG-------TEEEEEEECCTTCSC--------------------------H----H------
T ss_pred             eeEEeeCCCeEEEEEEECCC-------CeEEEEEEECCccch--------------------------H----H------
Confidence            36799999999999999863       699999997653210                          0    1      


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCe-EeCcccCCCCCCCeEEeecccCccccchhHHhhhc---hhhHHHHHHHHHHHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDV-SFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGH---ERLKSALAHIGTHAL  444 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V-~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~l~~~---~~~~~~LA~~g~~af  444 (455)
                          +|.+|++.+.++.     +++| .+=.. ..-...-.|||||++|-.+.+++......   ......++..++++ 
T Consensus        59 ----~~~~E~~il~~l~-----HpnIv~~~~~-~~~~~~~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~g-  127 (287)
T d1opja_          59 ----EFLKEAAVMKEIK-----HPNLVQLLGV-CTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSA-  127 (287)
T ss_dssp             ----HHHHHHHHHHHCC-----CTTBCCEEEE-ECSSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHH-
T ss_pred             ----HHHHHHHHHHhCC-----CCCEecCCcc-EeeCCeeEEEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHH-
Confidence                1356776666552     2332 11111 11223456999999998887765432111   11123344443332 


Q ss_pred             HHhhhccCCCC
Q 012848          445 LKMLLVPYLNN  455 (455)
Q Consensus       445 lkmlf~dgFv~  455 (455)
                      ++-|-..|++|
T Consensus       128 L~yLH~~~iiH  138 (287)
T d1opja_         128 MEYLEKKNFIH  138 (287)
T ss_dssp             HHHHHHTTCCC
T ss_pred             HHHHHHCCccc
Confidence            33334567776

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.0016  Score=61.09  Aligned_cols=40  Identities=15%  Similarity=0.267  Sum_probs=30.4

Q ss_pred             ChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          279 RLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       279 ~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +++|.|+-.  +.||.|+-|.||+|+.+.+       |+.||||+....
T Consensus         9 ~p~d~Y~i~--~~iG~G~fg~Vy~~~~~~~-------~~~vAvK~i~~~   48 (288)
T d2jfla1           9 NPEDFWEII--GELGDGAFGKVYKAQNKET-------SVLAAAKVIDTK   48 (288)
T ss_dssp             CGGGTEEEE--EEEEEETTEEEEEEEETTT-------CCEEEEEEEECS
T ss_pred             CcccCeEEe--EEEeeCCCcEEEEEEECCC-------CeEEEEEEECcC
Confidence            355655432  4699999999999998752       689999998643

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.001  Score=63.35  Aligned_cols=39  Identities=15%  Similarity=0.226  Sum_probs=30.6

Q ss_pred             hhccccc-cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          282 EIFDGFE-EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       282 eiF~~fd-~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      |+|+.++ .+.||.|+-|+||+|+-+.+       |+.||||+.+..
T Consensus         2 ~~~~rY~i~~~lG~G~fg~Vy~~~~~~~-------~~~~AiK~i~~~   41 (321)
T d1tkia_           2 ELYEKYMIAEDLGRGEFGIVHRCVETSS-------KKTYMAKFVKVK   41 (321)
T ss_dssp             CCTTTEEEEEEEEECSSEEEEEEEETTT-------TEEEEEEEECCC
T ss_pred             CCccceEEEEEEecCCCeEEEEEEECCC-------CcEEEEEEEcCC
Confidence            4555444 47899999999999998752       699999998653

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=96.60  E-value=0.0016  Score=62.99  Aligned_cols=31  Identities=23%  Similarity=0.245  Sum_probs=26.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|+||+|+-+.+       |+.||||+...
T Consensus        31 ~~~lG~G~fg~Vy~~~~~~~-------g~~vAvK~i~~   61 (350)
T d1koaa2          31 HEELGTGAFGVVHRVTERAT-------GNNFAAKFVMT   61 (350)
T ss_dssp             EEEEEEETTEEEEEEEETTT-------TEEEEEEEECC
T ss_pred             EEEEecCcCeEEEEEEECCC-------CCEEEEEEEcc
Confidence            46799999999999998752       69999998754

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.004  Score=58.55  Aligned_cols=30  Identities=17%  Similarity=0.058  Sum_probs=25.1

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      +.||.|+-|.||+|+-+.+       |+.||||+.+.
T Consensus        26 ~~iG~G~fg~Vy~a~~~~~-------~~~vAvK~~~~   55 (293)
T d1yhwa1          26 EKIGQGASGTVYTAMDVAT-------GQEVAIRQMNL   55 (293)
T ss_dssp             EECCCSSSCEEEEEEBTTT-------CCEEEEEEEEG
T ss_pred             EEEecCcCcEEEEEEECCC-------CCEEEEEEEec
Confidence            4599999999999997652       69999998753

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=96.56  E-value=0.002  Score=60.66  Aligned_cols=31  Identities=23%  Similarity=0.188  Sum_probs=26.5

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.||.|+-|+||+|+-+.+       |+.|||||..+.
T Consensus        41 ~~LG~G~fg~V~~a~~~~~-------~~~vAiK~i~~~   71 (328)
T d3bqca1          41 RKLGRGKYSEVFEAINITN-------NEKVVVKILKPV   71 (328)
T ss_dssp             EEEEECSSEEEEEEEETTT-------TEEEEEEEECSS
T ss_pred             EEEecCcCeEEEEEEECCC-------CCEEEEEEECHH
Confidence            6899999999999998652       699999998654

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.46  E-value=0.0034  Score=58.65  Aligned_cols=92  Identities=20%  Similarity=0.178  Sum_probs=56.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      -+.||.|+-|.||+|+.+..  ....+|+.||||+.+++..+..                                    
T Consensus        18 ~~~lG~G~fG~Vy~a~~~~~--~~~~~~~~vAvK~i~~~~~~~~------------------------------------   59 (301)
T d1lufa_          18 VRDIGEGAFGRVFQARAPGL--LPYEPFTMVAVKMLKEEASADM------------------------------------   59 (301)
T ss_dssp             EEEEEECSSCEEEEEEEETS--STTSSEEEEEEEECCTTCCHHH------------------------------------
T ss_pred             eEEEeeCCCeEEEEEEECCC--ccCCCCeEEEEEEEChhcChHH------------------------------------
Confidence            35799999999999998641  1123468999999876543211                                    


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccchhHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~  425 (455)
                        +-+|.+|+..+.++.     ++++.--.-.......-.++|||++|-.+.+++..
T Consensus        60 --~~~~~~E~~il~~l~-----h~niv~~~~~~~~~~~~~~v~e~~~~g~L~~~l~~  109 (301)
T d1lufa_          60 --QADFQREAALMAEFD-----NPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRS  109 (301)
T ss_dssp             --HHHHHHHHHHHHTCC-----CTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHH
T ss_pred             --HHHHHHHHHHHHhcC-----CCCcccceeeeccCCceEEEEEecCCCcHHHHHHh
Confidence              113345665555432     22221111122334677899999999998887643

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0084  Score=56.20  Aligned_cols=90  Identities=16%  Similarity=0.179  Sum_probs=56.1

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|+-|.||+|+++...  ....++.||||+.+++-.                            .+         
T Consensus        28 ~~~iG~G~fg~Vy~a~~~~~~--~~~~~~~vAvK~i~~~~~----------------------------~~---------   68 (311)
T d1t46a_          28 GKTLGAGAFGKVVEATAYGLI--KSDAAMTVAVKMLKPSAH----------------------------LT---------   68 (311)
T ss_dssp             EEEEEECSSEEEEEEEEESSS--STTCEEEEEEEEECTTCC----------------------------HH---------
T ss_pred             eeEEeecCCeEEEEEEEeccc--cCCCCeEEEEEEECcccC----------------------------HH---------
Confidence            368999999999999986311  123468999999987421                            00         


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCccc--CCCCCCCeEEeecccCccccchhH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPV--YPLVHPAVLVETYEQGECVSRYVD  424 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~--~~lst~rVLVmE~i~G~~i~~~~~  424 (455)
                       ++..|.+|+..+.++    .++++|.  +.+  ..-...-.|+|||++|-.+.+++.
T Consensus        69 -~~~~~~~E~~~~~~l----~~HpnIv--~~~g~~~~~~~~~lvmE~~~~g~l~~~l~  119 (311)
T d1t46a_          69 -EREALMSELKVLSYL----GNHMNIV--NLLGACTIGGPTLVITEYCCYGDLLNFLR  119 (311)
T ss_dssp             -HHHHHHHHHHHHHHH----CCCTTBC--CEEEEECSSSSCEEEEECCTTEEHHHHHH
T ss_pred             -HHHHHHHHHHHHHhc----cCCCCEE--EEEEEEeeCCEEEEEEEcCCCCCHHHHHH
Confidence             011235666666654    3344432  111  112234689999999998887764

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.002  Score=60.03  Aligned_cols=40  Identities=18%  Similarity=0.253  Sum_probs=30.1

Q ss_pred             ChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          279 RLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       279 ~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +++|.|+-  .+.||.|+-|.||+|+.+.+       |+.||||+....
T Consensus         7 ~i~d~Y~~--~~~lG~G~fg~Vy~~~~~~~-------~~~~AvK~i~~~   46 (293)
T d1jksa_           7 NVDDYYDT--GEELGSGQFAVVKKCREKST-------GLQYAAKFIKKR   46 (293)
T ss_dssp             CGGGTEEE--EEEEEECSSEEEEEEEETTT-------CCEEEEEEEEBC
T ss_pred             CcccCEEE--eEEEecCCCeEEEEEEECCC-------CCEEEEEEEEhh
Confidence            34554442  25799999999999998752       699999987644

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0048  Score=56.91  Aligned_cols=30  Identities=23%  Similarity=0.223  Sum_probs=25.7

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.||.|+-|.||+|++++        |++||||+.+.+
T Consensus        19 ~~iG~G~fg~Vy~~~~~~--------~~~vAvK~~~~~   48 (272)
T d1qpca_          19 ERLGAGQFGEVWMGYYNG--------HTKVAVKSLKQG   48 (272)
T ss_dssp             EEEEEETTEEEEEEEETT--------TEEEEEEEECTT
T ss_pred             EEEecCCCcEEEEEEECC--------CCEEEEEEEccC
Confidence            679999999999999864        589999987643

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=96.29  E-value=0.002  Score=62.36  Aligned_cols=38  Identities=21%  Similarity=0.341  Sum_probs=29.5

Q ss_pred             hhccccc-cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          282 EIFDGFE-EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       282 eiF~~fd-~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+|+.++ .+.||.|+-|.||+|+-+.+       |+.||||+.+.
T Consensus        26 ~~~d~Y~i~~~lG~G~fg~V~~a~~~~~-------~~~vAiK~i~~   64 (352)
T d1koba_          26 SVYDYYDILEELGSGAFGVVHRCVEKAT-------GRVFVAKFINT   64 (352)
T ss_dssp             CGGGTEEEEEEEEEETTEEEEEEEETTT-------CCEEEEEEEEC
T ss_pred             CcccceEEEEEEecCCCeEEEEEEECCC-------CCEEEEEEECC
Confidence            3454444 47899999999999997642       69999998754

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.006  Score=56.98  Aligned_cols=81  Identities=16%  Similarity=0.244  Sum_probs=53.3

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|+-|+||+|+.++        +++||||+.+.+-...                              +      
T Consensus        22 ~~~iG~G~fg~Vy~~~~~~--------~~~vAiK~l~~~~~~~------------------------------~------   57 (285)
T d1fmka3          22 EVKLGQGCFGEVWMGTWNG--------TTRVAIKTLKPGTMSP------------------------------E------   57 (285)
T ss_dssp             EEEEEECSSCEEEEEEETT--------TEEEEEEECCTTSSCH------------------------------H------
T ss_pred             eeEEeeCCCeEEEEEEECC--------CCEEEEEEECcccCCH------------------------------H------
Confidence            4679999999999999975        5789999987542110                              0      


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCC-CCCCCeEEeecccCccccchhH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP-LVHPAVLVETYEQGECVSRYVD  424 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~-lst~rVLVmE~i~G~~i~~~~~  424 (455)
                          +|.+|+..+.++.     +++|  -+.|.- ...+-.|||||++|-++.++..
T Consensus        58 ----~~~~E~~~l~~l~-----h~nI--v~~~g~~~~~~~~lv~Ey~~~g~l~~~~~  103 (285)
T d1fmka3          58 ----AFLQEAQVMKKLR-----HEKL--VQLYAVVSEEPIYIVTEYMSKGSLLDFLK  103 (285)
T ss_dssp             ----HHHHHHHHHHHCC-----CTTB--CCEEEEECSSSCEEEECCCTTCBHHHHHS
T ss_pred             ----HHHHHHHHHHhcc-----cCCE--eEEEEEEecCCeEEEEEecCCCchhhhhh
Confidence                2456777776652     2221  122210 2355689999999988776543

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.0032  Score=58.54  Aligned_cols=111  Identities=14%  Similarity=0.121  Sum_probs=62.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|+.|.||+|+++          .+||||+.+..-...                           +..+      
T Consensus        13 ~~~lG~G~fg~Vy~~~~~----------~~vAvK~~~~~~~~~---------------------------~~~~------   49 (276)
T d1uwha_          13 GQRIGSGSFGTVYKGKWH----------GDVAVKMLNVTAPTP---------------------------QQLQ------   49 (276)
T ss_dssp             CSEEEECSSCEEEEEESS----------SEEEEEECCCSSCCT---------------------------THHH------
T ss_pred             EEEEeeCCCcEEEEEEEC----------CEEEEEEEEcccCCH---------------------------HHHH------
Confidence            367999999999999874          369999987643210                           0011      


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCC--CCCeEEeecccCccccchhHHhhhc--hhhHHHHHHHHHHHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLV--HPAVLVETYEQGECVSRYVDELQGH--ERLKSALAHIGTHAL  444 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~ls--t~rVLVmE~i~G~~i~~~~~~l~~~--~~~~~~LA~~g~~af  444 (455)
                          +|.+|++.+.++.     +++|.  +.+ +++  .+-.|||||++|-.+.+++......  ......++..++++ 
T Consensus        50 ----~~~~E~~~l~~l~-----HpnIv--~~~-~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~g-  116 (276)
T d1uwha_          50 ----AFKNEVGVLRKTR-----HVNIL--LFM-GYSTAPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQG-  116 (276)
T ss_dssp             ----HHHHHHHHHTTCC-----CTTBC--CEE-EEECSSSCEEEEECCCEEEHHHHHHTSCCCCCHHHHHHHHHHHHHH-
T ss_pred             ----HHHHHHHHHHhCC-----CCCEe--eee-EEEeccEEEEEEecCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHH-
Confidence                2456766666542     33331  211 222  3347999999999988876432221  11123344444332 


Q ss_pred             HHhhhccCCCC
Q 012848          445 LKMLLVPYLNN  455 (455)
Q Consensus       445 lkmlf~dgFv~  455 (455)
                      ++-|-..|++|
T Consensus       117 l~yLH~~~ivH  127 (276)
T d1uwha_         117 MDYLHAKSIIH  127 (276)
T ss_dssp             HHHHHHTTCCC
T ss_pred             HHHHhcCCEec
Confidence            22233567776

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.12  E-value=0.0043  Score=58.58  Aligned_cols=40  Identities=20%  Similarity=0.258  Sum_probs=30.0

Q ss_pred             ChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          279 RLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       279 ~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      ++.+.|+-  .+.||.|+-|.||+|+-+.+       |+.||||+....
T Consensus         6 di~d~Y~~--~~~lG~G~fg~Vy~~~~~~~-------~~~vAvK~i~~~   45 (307)
T d1a06a_           6 DIRDIYDF--RDVLGTGAFSEVILAEDKRT-------QKLVAIKCIAKK   45 (307)
T ss_dssp             CGGGTEEE--EEESBSGGGGGEEEEEETTT-------CCEEEEEEEEC-
T ss_pred             CCccceEE--EEEEeeccCeEEEEEEECCC-------CCEEEEEEEchH
Confidence            45555542  25799999999999998752       699999997543

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0081  Score=56.00  Aligned_cols=83  Identities=22%  Similarity=0.336  Sum_probs=51.1

Q ss_pred             cccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHHH
Q 012848          291 PVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMS  370 (455)
Q Consensus       291 PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~~  370 (455)
                      -||.|+-|.||+|+.+..  +   ++..||||+.+++..+.   +                         .+        
T Consensus        16 ~iG~G~fg~Vy~~~~~~~--~---~~~~vAvK~l~~~~~~~---~-------------------------~~--------   54 (285)
T d1u59a_          16 ELGCGNFGSVRQGVYRMR--K---KQIDVAIKVLKQGTEKA---D-------------------------TE--------   54 (285)
T ss_dssp             EEECCTTEEEEEEEEC--------CCEEEEEEEECSSCCHH---H-------------------------HH--------
T ss_pred             EEecccCeEEEEEEEecC--C---CcEEEEEEEEChhcCHH---H-------------------------HH--------
Confidence            499999999999988642  1   25789999987654211   0                         11        


Q ss_pred             hcCHHHHHHHHHHHHHHhCCCCCeEeCcccCC-CCCCCeEEeecccCccccchh
Q 012848          371 QVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP-LVHPAVLVETYEQGECVSRYV  423 (455)
Q Consensus       371 ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~-lst~rVLVmE~i~G~~i~~~~  423 (455)
                        +|.+|++-+.++.     +++|  -+.+.- ...+-.|||||++|-.+.+++
T Consensus        55 --~~~~E~~il~~l~-----HpnI--v~l~g~~~~~~~~lvmE~~~~g~L~~~l   99 (285)
T d1u59a_          55 --EMMREAQIMHQLD-----NPYI--VRLIGVCQAEALMLVMEMAGGGPLHKFL   99 (285)
T ss_dssp             --HHHHHHHHHHHCC-----CTTB--CCEEEEEESSSEEEEEECCTTEEHHHHH
T ss_pred             --HHHHHHHHHHhCC-----CCCE--eeEeeeeccCeEEEEEEeCCCCcHHHHh
Confidence              2456766666542     2322  111110 122346999999999998765

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.013  Score=53.95  Aligned_cols=31  Identities=23%  Similarity=0.313  Sum_probs=26.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|+||+|+.+.+       |+.||||+.++
T Consensus        11 ~~~iG~G~fg~Vy~~~~~~~-------~~~vAiK~i~~   41 (263)
T d2j4za1          11 GRPLGKGKFGNVYLAREKQS-------KFILALKVLFK   41 (263)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------CCEEEEEEEEH
T ss_pred             EEEEecCCCcEEEEEEECCC-------CcEEEEEEEch
Confidence            36899999999999998752       69999998754

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.019  Score=53.01  Aligned_cols=37  Identities=27%  Similarity=0.252  Sum_probs=26.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .+.||.|+-|+||+|+.+..  +....|+.||||+.+.+
T Consensus        18 ~~~iG~G~fG~Vy~a~~~~~--~~~~~~~~vAvK~l~~~   54 (299)
T d1ywna1          18 GKPLGRGAFGQVIEADAFGI--DKTATCRTVAVKMLKEG   54 (299)
T ss_dssp             EEEEEECSSCEEEEEEEEST--TSSSCEEEEEEEEC---
T ss_pred             eeEEeecCCeEEEEEEEcCC--CcccCCeEEEEEEEccc
Confidence            37899999999999998642  22334689999987654

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0058  Score=57.35  Aligned_cols=91  Identities=13%  Similarity=0.168  Sum_probs=54.4

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+.||.|+-|.||+|+.+..  +...+++.||||+.++.....   +                                 
T Consensus        25 ~~~lG~G~fG~Vy~a~~~~~--~~~~~~~~VAvK~~~~~~~~~---~---------------------------------   66 (308)
T d1p4oa_          25 SRELGQGSFGMVYEGVAKGV--VKDEPETRVAIKTVNEAASMR---E---------------------------------   66 (308)
T ss_dssp             EEEEEECSSSEEEEEEEEEE--ETTEEEEEEEEEECCTTSCHH---H---------------------------------
T ss_pred             eeEEeeCCCeEEEEEEECCc--ccCCCCcEEEEEEECcccChH---H---------------------------------
Confidence            36799999999999998631  111235899999876442110   0                                 


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCC-eEeCcccCCCCCCCeEEeecccCccccchhHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKD-VSFPKPVYPLVHPAVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~-V~vP~~~~~lst~rVLVmE~i~G~~i~~~~~~  425 (455)
                        +.+|.+|+..+.++.     .++ |.+-.+ ...-....+||||++|-.+.+++..
T Consensus        67 --~~~~~~E~~il~~l~-----h~nIv~~~~~-~~~~~~~~lv~e~~~~g~l~~~~~~  116 (308)
T d1p4oa_          67 --RIEFLNEASVMKEFN-----CHHVVRLLGV-VSQGQPTLVIMELMTRGDLKSYLRS  116 (308)
T ss_dssp             --HHHHHHHHHHGGGCC-----CTTBCCEEEE-ECSSSSCEEEEECCTTCBHHHHHHH
T ss_pred             --HHHHHHHHHHHHHcC-----CCCEeeeeeE-EecCCceeEEEeecCCCCHHHHHHh
Confidence              112345665555431     222 222111 1234567899999999998887643

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.93  E-value=0.0075  Score=56.06  Aligned_cols=30  Identities=17%  Similarity=0.224  Sum_probs=25.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.||.|+-|+||+|+-+.+       |+.|||||..
T Consensus        10 ~~~iG~G~fG~Vy~a~~~~~-------~~~vAvK~~~   39 (293)
T d1csna_          10 GRRIGEGSFGVIFEGTNLLN-------NQQVAIKFEP   39 (293)
T ss_dssp             EEEEEECSSCEEEEEEETTT-------TEEEEEEEEE
T ss_pred             EEEEecCCCeEEEEEEECCC-------CCEEEEEEEc
Confidence            36799999999999997642       6999999864

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.88  E-value=0.011  Score=55.73  Aligned_cols=41  Identities=22%  Similarity=0.177  Sum_probs=33.0

Q ss_pred             CChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          278 RRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       278 ~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      .++++.|+.+  +.||.|+-|.||+|+-+.+       |+.||||+.+.+
T Consensus        11 ~dp~~~y~~l--~~lG~G~fg~Vy~a~~~~~-------~~~vAvK~i~~~   51 (309)
T d1u5ra_          11 DDPEKLFSDL--REIGHGSFGAVYFARDVRN-------SEVVAIKKMSYS   51 (309)
T ss_dssp             SCHHHHEEEE--EEEEECSSSEEEEEEETTT-------TEEEEEEEEECC
T ss_pred             cCcHHhcEee--EEEecCCCeEEEEEEECCC-------CcEEEEEEEchh
Confidence            3567777765  4799999999999998652       699999998654

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.0078  Score=55.56  Aligned_cols=32  Identities=13%  Similarity=0.130  Sum_probs=27.1

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      -+.||.|+-|+||+|+-+.+       |+.||||+.+.+
T Consensus         9 ~~~iG~G~fg~Vy~~~~~~~-------~~~vAvK~i~~~   40 (269)
T d2java1           9 LYTIGTGSYGRCQKIRRKSD-------GKILVWKELDYG   40 (269)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------CCEEEEEEECCT
T ss_pred             eEEEecCCCeEEEEEEECCC-------CCEEEEEEEChh
Confidence            36899999999999998752       699999988654

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.0062  Score=56.47  Aligned_cols=30  Identities=27%  Similarity=0.284  Sum_probs=25.6

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      +-||.|+-|.||+|+-+.+       |+.||||+.+.
T Consensus        11 ~~lG~G~fg~V~~~~~~~~-------~~~vAiK~i~~   40 (271)
T d1nvra_          11 QTLGEGAYGEVQLAVNRVT-------EEAVAVKIVDM   40 (271)
T ss_dssp             EEEEEETTEEEEEEEETTT-------CCEEEEEEEEC
T ss_pred             EEEecCcCeEEEEEEECCC-------CCEEEEEEEeh
Confidence            6799999999999998752       69999998643

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.67  E-value=0.01  Score=54.82  Aligned_cols=30  Identities=20%  Similarity=0.138  Sum_probs=25.5

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      +.||.|+-|.||+|+.+.+       |+.||||+...
T Consensus        13 ~~iG~G~fG~Vy~a~~~~~-------~~~vAvK~~~~   42 (299)
T d1ckia_          13 RKIGSGSFGDIYLGTDIAA-------GEEVAIKLECV   42 (299)
T ss_dssp             EEEEECSSSEEEEEEETTT-------TEEEEEEEEES
T ss_pred             EEEeeCCCcEEEEEEECCC-------CCEEEEEEEch
Confidence            6799999999999998652       69999998654

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.031  Score=52.36  Aligned_cols=31  Identities=32%  Similarity=0.226  Sum_probs=26.0

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.||.|+-|.||+|+-+.+       |+.||||+.+..
T Consensus        24 ~~LG~G~fg~Vy~a~~~~~-------~~~vAiK~i~~~   54 (348)
T d2gfsa1          24 SPVGSGAYGSVCAAFDTKT-------GLRVAVKKLSRP   54 (348)
T ss_dssp             EECGGGTTSSEEEEEETTT-------TEEEEEEECSCT
T ss_pred             EEEecCCCeEEEEEEECCC-------CCEEEEEEECch
Confidence            6899999999999987542       699999997643

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.022  Score=53.67  Aligned_cols=31  Identities=29%  Similarity=0.164  Sum_probs=20.5

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      ++||.|+-|.||+|+-+.+       |+.||||+.+..
T Consensus        24 ~~lG~G~fg~V~~~~~~~~-------~~~vAiK~i~~~   54 (346)
T d1cm8a_          24 QPVGSGAYGAVCSAVDGRT-------GAKVAIKKLYRP   54 (346)
T ss_dssp             EEC------CEEEEEETTT-------CCEEEEEECSST
T ss_pred             EEEecCCCeEEEEEEECCC-------CCEEEEEEEchh
Confidence            5899999999999997652       699999998754

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0096  Score=56.13  Aligned_cols=33  Identities=21%  Similarity=0.256  Sum_probs=27.6

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcc
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVG  329 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~  329 (455)
                      +.||.|+-|.||+|+.+.+       |+.||||+.+....
T Consensus        12 ~~iG~G~fg~V~~~~~~~~-------~~~vAiK~i~~~~~   44 (322)
T d1s9ja_          12 SELGAGNGGVVFKVSHKPS-------GLVMARKLIHLEIK   44 (322)
T ss_dssp             EEEECCSSCCEEEEEETTT-------TEEEEEEEEECCCC
T ss_pred             EEEecCCCeEEEEEEECCC-------CcEEEEEEEChhhC
Confidence            5799999999999998652       69999999876543

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.022  Score=52.51  Aligned_cols=37  Identities=22%  Similarity=0.356  Sum_probs=27.1

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV  328 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV  328 (455)
                      .+-||.|+-|.||+|+++..  + .....+||||+.+++.
T Consensus        12 ~~~iG~G~fG~Vy~~~~~~~--~-~~~~~~vAvK~~~~~~   48 (283)
T d1mqba_          12 QKVIGAGEFGEVYKGMLKTS--S-GKKEVPVAIKTLKAGY   48 (283)
T ss_dssp             EEEEEECSSSEEEEEEEEC------CCEEEEEEEEECTTC
T ss_pred             eeEEeeCCCeEEEEEEEeCC--C-CEEEEEEEEEEECccc
Confidence            46799999999999999852  1 1123589999987654

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.037  Score=52.12  Aligned_cols=31  Identities=19%  Similarity=0.224  Sum_probs=26.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      .+.||.|+-|.||+|+-+.+       |+.||||+.++
T Consensus         7 ~~~iG~G~fg~Vy~~~~~~t-------~~~vAvK~i~k   37 (320)
T d1xjda_           7 HKMLGKGSFGKVFLAEFKKT-------NQFFAIKALKK   37 (320)
T ss_dssp             EEEEEECSSSEEEEEEETTT-------TEEEEEEEEEH
T ss_pred             eeEEecCCCcEEEEEEECCC-------CCEEEEEEEch
Confidence            47899999999999998752       69999999764

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.38  E-value=0.018  Score=55.47  Aligned_cols=30  Identities=13%  Similarity=0.070  Sum_probs=25.8

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.||.|+-|.||+|+-+.+       |+.||||+..
T Consensus         9 ~~~lG~G~fg~Vy~~~~~~t-------~~~vAiK~i~   38 (364)
T d1omwa3           9 HRIIGRGGFGEVYGCRKADT-------GKMYAMKCLD   38 (364)
T ss_dssp             EEEEEECSSCEEEEEEETTT-------CCEEEEEEEE
T ss_pred             eeEEecCCCeEEEEEEECCC-------CCEEEEEEEc
Confidence            36899999999999998752       6999999875

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.02  Score=54.22  Aligned_cols=30  Identities=23%  Similarity=0.260  Sum_probs=22.8

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      +.||.|+-|+||+|+-+.+       |+.||||+.++
T Consensus        14 ~~LG~G~fg~Vy~~~~~~~-------~~~vAvK~i~~   43 (345)
T d1pmea_          14 SYIGEGAYGMVCSAYDNVN-------KVRVAIKKISP   43 (345)
T ss_dssp             EECC---CCCEEEEEETTT-------CSEEEEEEECC
T ss_pred             EEEeeccCeEEEEEEECCC-------CcEEEEEEEeh
Confidence            7899999999999987642       69999999765

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.022  Score=53.06  Aligned_cols=30  Identities=20%  Similarity=0.097  Sum_probs=25.7

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.||.|+-|+||+|+-+.+       |+.||||+.+
T Consensus        13 ~~~lG~G~fg~Vy~a~~~~~-------~~~vAvK~i~   42 (288)
T d1uu3a_          13 GKILGEGSFSTVVLARELAT-------SREYAIKILE   42 (288)
T ss_dssp             EEEEEECSSCEEEEEEETTT-------CCEEEEEEEE
T ss_pred             EEEEeeCCCeEEEEEEECCC-------CCEEEEEEEe
Confidence            46899999999999998752       6999999865

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.0099  Score=55.61  Aligned_cols=85  Identities=14%  Similarity=0.153  Sum_probs=50.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCe--EEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPI--VVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAV  366 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~--~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~  366 (455)
                      .+.||.|+-|.||+|+.+++       |.  .||||..+....+                            +.      
T Consensus        15 ~~~iG~G~fg~Vy~~~~~~~-------~~~~~vaiK~~~~~~~~----------------------------~~------   53 (309)
T d1fvra_          15 QDVIGEGNFGQVLKARIKKD-------GLRMDAAIKRMKEYASK----------------------------DD------   53 (309)
T ss_dssp             EEEEECGGGCEEEEEEEEET-------TEEEEEEEEEEECC---------------------------------------
T ss_pred             EEEEeeCCCcEEEEEEECCC-------CeEEEEEEEEECcccCh----------------------------HH------
Confidence            47899999999999999862       34  5677765432210                            00      


Q ss_pred             HHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCC--CCCCCeEEeecccCccccchhH
Q 012848          367 FMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP--LVHPAVLVETYEQGECVSRYVD  424 (455)
Q Consensus       367 ~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~--lst~rVLVmE~i~G~~i~~~~~  424 (455)
                          .-+|.+|++.+.+..    ++++|  -+.+.-  .-..-.+||||++|-.+.+++.
T Consensus        54 ----~~~~~~E~~~l~~l~----~HpnI--v~~~~~~~~~~~~~iV~ey~~~g~L~~~l~  103 (309)
T d1fvra_          54 ----HRDFAGELEVLCKLG----HHPNI--INLLGACEHRGYLYLAIEYAPHGNLLDFLR  103 (309)
T ss_dssp             -----CHHHHHHHHHTTCC----CCTTB--CCEEEEEEETTEEEEEECCCTTCBHHHHHH
T ss_pred             ----HHHHHHHHHHHHhcc----CCCCE--eeEEEEEecCCeeEEEEEecCCCcHHHHHh
Confidence                113466666665432    22321  111211  1234579999999999988764

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.29  E-value=0.028  Score=52.96  Aligned_cols=31  Identities=26%  Similarity=0.254  Sum_probs=26.2

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      -+.||.|+-|+||+|+-+.+       |+.||||+.+.
T Consensus         9 ~~~lG~G~fg~Vy~a~~~~~-------g~~vAvK~i~~   39 (316)
T d1fota_           9 LRTLGTGSFGRVHLIRSRHN-------GRYYAMKVLKK   39 (316)
T ss_dssp             EEEEEECSSCEEEEEEETTT-------CCEEEEEEEEH
T ss_pred             EEEEecCcCcEEEEEEECCC-------CCEEEEEEEch
Confidence            36899999999999998652       69999999753

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=95.27  E-value=0.025  Score=50.04  Aligned_cols=82  Identities=26%  Similarity=0.145  Sum_probs=54.9

Q ss_pred             ccccccccccc-CcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHH
Q 012848          285 DGFEEAPVASG-SIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQ  363 (455)
Q Consensus       285 ~~fd~~PiASA-SIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~e  363 (455)
                      ...+-+|++.| |-++|||.+...        |..++||+..|+-..                                 
T Consensus        11 ~g~~~~~~~~G~s~~~v~r~~~~~--------~~~~vlK~~~~~~~~---------------------------------   49 (255)
T d1nd4a_          11 FGYDWAQQTIGCSDAAVFRLSAQG--------RPVLFVKTDLSGALN---------------------------------   49 (255)
T ss_dssp             TTCEEEECSCTTSSCEEEEEECTT--------SCCEEEEEECSCTTS---------------------------------
T ss_pred             cCCceEEcCCcccCCeEEEEEeCC--------CCEEEEEeCCccCHh---------------------------------
Confidence            33455677775 468999998753        578999998877432                                 


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCC--CCCCCeEEeecccCccccc
Q 012848          364 FAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP--LVHPAVLVETYEQGECVSR  421 (455)
Q Consensus       364 f~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~--lst~rVLVmE~i~G~~i~~  421 (455)
                               ++..|++.++.+..     ..+.+|+++.-  -.....++|||++|.++.+
T Consensus        50 ---------~l~~E~~~l~~L~~-----~gvpvP~v~~~~~~~~~~~~v~~~i~G~~~~~   95 (255)
T d1nd4a_          50 ---------ELQDEAARLSWLAT-----TGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLS   95 (255)
T ss_dssp             ---------CHHHHHHHHHHHHT-----TTCCBCCEEEEEECSSCEEEEEECCSSEETTT
T ss_pred             ---------HHHHHHHHHHHHHh-----cCCCCCceeeecccccceEEEEEeeecccccc
Confidence                     23555555554432     34668888842  2244589999999999875

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.26  E-value=0.037  Score=51.52  Aligned_cols=88  Identities=19%  Similarity=0.364  Sum_probs=52.8

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFM  368 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l  368 (455)
                      .+-||.|+-|+||+|+.+.+  |  ..+..||||+.+++..+.                            ..+      
T Consensus        31 ~~~lG~G~fg~Vy~~~~~~~--~--~~~~~vavK~~~~~~~~~----------------------------~~~------   72 (299)
T d1jpaa_          31 EQVIGAGEFGEVCSGHLKLP--G--KREIFVAIKTLKSGYTEK----------------------------QRR------   72 (299)
T ss_dssp             EEEEEECSSSEEEEEEECC-------CCEEEEEEECCSSCCHH----------------------------HHH------
T ss_pred             eeEEeeCCCeEEEEEEEeCC--C--CEEEEEEEEEECcccCHH----------------------------HHH------
Confidence            46899999999999999752  2  113479999877653211                            111      


Q ss_pred             HHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccC--CCCCCCeEEeecccCccccchhHH
Q 012848          369 MSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY--PLVHPAVLVETYEQGECVSRYVDE  425 (455)
Q Consensus       369 ~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~--~lst~rVLVmE~i~G~~i~~~~~~  425 (455)
                          +|.+|++-+.++.     +++|.  +.+.  .-...-.+||||++|-.+.++...
T Consensus        73 ----~~~~E~~~l~~l~-----HpnIv--~l~g~~~~~~~~~iv~Ey~~~g~L~~~~~~  120 (299)
T d1jpaa_          73 ----DFLSEASIMGQFD-----HPNVI--HLEGVVTKSTPVMIITEFMENGSLDSFLRQ  120 (299)
T ss_dssp             ----HHHHHHHHHTTCC-----CTTBC--CEEEEECSSSSCEEEEECCTTEEHHHHHHT
T ss_pred             ----HHHHHHHHHHhCC-----CCCCc--cEEEEEeeCCEEEEEEEecCCCcceeeecc
Confidence                2345665555431     23321  1111  123455799999999999886543

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.034  Score=50.92  Aligned_cols=27  Identities=26%  Similarity=0.284  Sum_probs=24.0

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      +.||.|+.|.||+|+++         |++||||+.+
T Consensus        13 ~~lG~G~fg~Vy~~~~~---------~~~vAvK~i~   39 (262)
T d1byga_          13 QTIGKGEFGDVMLGDYR---------GNKVAVKCIK   39 (262)
T ss_dssp             EEEEECSSCEEEEEEET---------TEEEEEEECC
T ss_pred             EEEecCCCeEEEEEEEC---------CeEEEEEEEC
Confidence            56999999999999985         5899999975

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.021  Score=52.57  Aligned_cols=42  Identities=19%  Similarity=0.100  Sum_probs=30.5

Q ss_pred             CCChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC
Q 012848          277 GRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP  326 (455)
Q Consensus       277 G~~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP  326 (455)
                      |...+.-|-.|++ -||.|+-|.||+|+.+.+       |+.||||+...
T Consensus         3 g~~~~gry~~~~~-~iG~G~fg~Vy~~~~~~~-------~~~va~K~i~~   44 (270)
T d1t4ha_           3 GMSNDGRFLKFDI-EIGRGSFKTVYKGLDTET-------TVEVAWCELQD   44 (270)
T ss_dssp             EECTTSCEEEEEE-EEEECSSEEEEEEEETTT-------CCEEEEEEEEG
T ss_pred             CcCCCCCEEEeee-EEecCcCcEEEEEEECCC-------CeEEEEEEEch
Confidence            3334444555665 499999999999998752       68999997653

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.052  Score=49.39  Aligned_cols=116  Identities=13%  Similarity=0.070  Sum_probs=63.8

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHH
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMM  369 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~  369 (455)
                      +.||.|+-|+||+|+.+.+  +  ..+..||||+.++...+                            +..+       
T Consensus        13 ~~iG~G~fg~Vy~a~~~~~--~--~~~~~vaik~~~~~~~~----------------------------~~~~-------   53 (273)
T d1mp8a_          13 RCIGEGQFGDVHQGIYMSP--E--NPALAVAIKTCKNCTSD----------------------------SVRE-------   53 (273)
T ss_dssp             EEEEECSSSEEEEEEECCC------CCEEEEEEECTTTTSH----------------------------HHHH-------
T ss_pred             EEEeeCCCcEEEEEEEecC--C--ceeEEEEEEEeccccCH----------------------------HHHH-------
Confidence            6899999999999998642  1  23578999987644221                            1111       


Q ss_pred             HhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCC-CCCCCeEEeecccCccccchhHHhhh--chhhHHHHHHHHHHHHHH
Q 012848          370 SQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP-LVHPAVLVETYEQGECVSRYVDELQG--HERLKSALAHIGTHALLK  446 (455)
Q Consensus       370 ~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~-lst~rVLVmE~i~G~~i~~~~~~l~~--~~~~~~~LA~~g~~aflk  446 (455)
                         .|.+|+..+.++.     +++|  -+.+.- ....-.+||||++|-.+.++......  .......++..++++ ++
T Consensus        54 ---~~~~E~~~l~~l~-----HpnI--v~l~~~~~~~~~~iv~E~~~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~g-l~  122 (273)
T d1mp8a_          54 ---KFLQEALTMRQFD-----HPHI--VKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTA-LA  122 (273)
T ss_dssp             ---HHHHHHHHHHTCC-----CTTB--CCEEEEECSSSCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHH-HH
T ss_pred             ---HHHHHHHHHHhCC-----CCCE--eeEEEEEecCeEEEEEEeccCCcHHhhhhccCCCCCHHHHHHHHHHHHHH-hh
Confidence               2356666665442     2332  111111 12345799999999988776433211  111123344444443 33


Q ss_pred             hhhccCCCC
Q 012848          447 MLLVPYLNN  455 (455)
Q Consensus       447 mlf~dgFv~  455 (455)
                      -+-..|++|
T Consensus       123 ylH~~~iiH  131 (273)
T d1mp8a_         123 YLESKRFVH  131 (273)
T ss_dssp             HHHHTTCCC
T ss_pred             hhcccCeec
Confidence            345566666

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.05  E-value=0.037  Score=51.95  Aligned_cols=36  Identities=25%  Similarity=0.182  Sum_probs=27.0

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.||.|+-|.||+|+.+..  ++...+..||||+.+++
T Consensus        43 ~~lG~G~fG~Vy~a~~~~~--~~~~~~~~vavK~~~~~   78 (325)
T d1rjba_          43 KVLGSGAFGKVMNATAYGI--SKTGVSIQVAVKMLKEK   78 (325)
T ss_dssp             EEEEECSSEEEEEEEEESC--SSSSCEEEEEEEEECC-
T ss_pred             eEEeeCCCeEEEEEEEcCC--CcccceeEEEEEEeccc
Confidence            6899999999999998741  22233468999988764

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.69  E-value=0.029  Score=52.27  Aligned_cols=28  Identities=29%  Similarity=0.397  Sum_probs=23.6

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+-||.|+-|+||+|++.         |+.||||+.+
T Consensus         8 ~~~iG~G~fg~Vy~~~~~---------g~~vAvK~~~   35 (303)
T d1vjya_           8 QESIGKGRFGEVWRGKWR---------GEEVAVKIFS   35 (303)
T ss_dssp             EEEEECCSSSEEEEEEET---------TEEEEEEEEC
T ss_pred             EEEEeeCCCeEEEEEEEC---------CEEEEEEEEC
Confidence            345899999999999973         5999999864

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.078  Score=49.56  Aligned_cols=125  Identities=14%  Similarity=0.111  Sum_probs=67.9

Q ss_pred             ChHhhccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHH
Q 012848          279 RLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLD  358 (455)
Q Consensus       279 ~~~eiF~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~  358 (455)
                      +.+++-..|+ +-||.|+-|.||+|++.++ .|   ....||||+.+....                            .
T Consensus        23 ~~~~~~~~~~-~~iG~G~fg~Vyk~~~~~~-~~---~~~~vAvK~~~~~~~----------------------------~   69 (311)
T d1r0pa_          23 GPSSLIVHFN-EVIGRGHFGCVYHGTLLDN-DG---KKIHCAVKSLNRITD----------------------------I   69 (311)
T ss_dssp             CGGGEEEEEE-EEEEEETTEEEEEEEECC--------CEEEEEEEECCCCC----------------------------H
T ss_pred             ChHHceeccc-eEEeecCCeEEEEEEEECC-CC---EEEEEEEEEECcccC----------------------------H
Confidence            4455544565 5599999999999999752 11   235789997753211                            0


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCC----CCCeEEeecccCccccchhHHhhhc--hhh
Q 012848          359 ESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLV----HPAVLVETYEQGECVSRYVDELQGH--ERL  432 (455)
Q Consensus       359 e~v~ef~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~ls----t~rVLVmE~i~G~~i~~~~~~l~~~--~~~  432 (455)
                      +..+          +|.+|++.+.++.     +++|  -+.+ +.|    ..-.+||||++|-.+.++.......  ...
T Consensus        70 ~~~~----------~~~~E~~~l~~l~-----HpnI--v~~~-g~~~~~~~~~~lv~E~~~~g~l~~~~~~~~~~~~~~~  131 (311)
T d1r0pa_          70 GEVS----------QFLTEGIIMKDFS-----HPNV--LSLL-GICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKD  131 (311)
T ss_dssp             HHHH----------HHHHHHHHHHTCC-----CTTB--CCCC-EEEEETTTEEEEEEECCTTCBHHHHHHCTTCCCBHHH
T ss_pred             HHHH----------HHHHHHHHHHhCC-----CCCE--eEEe-EEEEecCCceEEEEEEeecCchhhhhccccccchHHH
Confidence            1111          2456666666542     2221  1111 111    2346999999999988765432111  112


Q ss_pred             HHHHHHHHHHHHHHhhhccCCCC
Q 012848          433 KSALAHIGTHALLKMLLVPYLNN  455 (455)
Q Consensus       433 ~~~LA~~g~~aflkmlf~dgFv~  455 (455)
                      .-.++..++++... +-..|++|
T Consensus       132 ~~~i~~qia~gL~~-lH~~~iiH  153 (311)
T d1r0pa_         132 LIGFGLQVAKGMKF-LASKKFVH  153 (311)
T ss_dssp             HHHHHHHHHHHHHH-HHHTTCCC
T ss_pred             HHHHHHHHHHhhhh-hcccCccc
Confidence            23455555555433 44556655

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.06  E-value=0.022  Score=54.14  Aligned_cols=30  Identities=13%  Similarity=0.020  Sum_probs=25.5

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      .+.||.|+-|.||+|+-+.+       |+.||||+.+
T Consensus        17 ~~~lG~G~fg~Vy~a~~~~~-------~~~vAiK~i~   46 (335)
T d2ozaa1          17 SQVLGLGINGKVLQIFNKRT-------QEKFALKMLQ   46 (335)
T ss_dssp             EEEEEECSSCEEEEEEETTT-------CCEEEEEEEE
T ss_pred             eEEeeeccCeEEEEEEECCC-------CCEEEEEEEC
Confidence            46799999999999998652       6999999964

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.86  E-value=0.096  Score=47.91  Aligned_cols=34  Identities=32%  Similarity=0.463  Sum_probs=19.4

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +-||.|+-|+||+|+++.+ .|   .+.+||||+..++
T Consensus        14 ~~iG~G~fg~Vy~~~~~~~-~~---~~~~vAiK~l~~~   47 (273)
T d1u46a_          14 EKLGDGSFGVVRRGEWDAP-SG---KTVSVAVKCLKPD   47 (273)
T ss_dssp             EECC----CCCEEEEEECT-TS---CEEEEEEEC----
T ss_pred             EEEecCCCeEEEEEEEECC-CC---cEEEEEEEEEChh
Confidence            4699999999999998642 12   3468999987654

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.55  E-value=0.056  Score=51.41  Aligned_cols=30  Identities=13%  Similarity=0.078  Sum_probs=25.8

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      -+.||.|+-|+||+|+-+.+       |+.||||+.+
T Consensus        10 ~~~lG~G~fg~V~~~~~~~~-------~~~~AiK~i~   39 (337)
T d1o6la_          10 LKLLGKGTFGKVILVREKAT-------GRYYAMKILR   39 (337)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------CCEEEEEEEE
T ss_pred             EEEEecCcCeEEEEEEECCC-------CCEEEEEEEc
Confidence            36799999999999998752       6999999975

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.15  E-value=0.1  Score=49.23  Aligned_cols=31  Identities=26%  Similarity=0.141  Sum_probs=24.3

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.||.|+-|.||+|+-+.+       |+.||||+....
T Consensus        23 ~~LG~G~fg~V~~~~d~~t-------~~~vAvK~i~~~   53 (355)
T d2b1pa1          23 KPIGSGAQGIVCAAYDAVL-------DRNVAIKKLSRP   53 (355)
T ss_dssp             EECSCC--CEEEEEEETTT-------TEEEEEEEEEST
T ss_pred             EEeecCcCeEEEEEEECCC-------CCEEEEEEEChh
Confidence            7999999999999997642       699999987643

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.73  E-value=0.12  Score=48.37  Aligned_cols=35  Identities=14%  Similarity=0.042  Sum_probs=26.9

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      -+.||.|+-|.||+|+-...    +..|+.||||+..+.
T Consensus        29 ~~~IG~G~fg~Vy~~~~~~~----~~~g~~vAvK~i~~~   63 (322)
T d1vzoa_          29 LKVLGTGAYGKVFLVRKISG----HDTGKLYAMKVLKKA   63 (322)
T ss_dssp             EEEEEETTTEEEEEEEECSS----TTTTCEEEEEEESEE
T ss_pred             EEEEecCCCeEEEEEEECcc----CCCCcEEEEEEEehH
Confidence            37999999999999986431    123799999987653

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.45  E-value=0.37  Score=45.87  Aligned_cols=107  Identities=15%  Similarity=0.159  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHhCCChHhh-ccccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHH
Q 012848          266 AYTKKTIERAFGRRLSEI-FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAK  344 (455)
Q Consensus       266 ~~v~~vle~elG~~~~ei-F~~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~  344 (455)
                      +.+++++.+-+|..|.++ -++++-+|++.|-.-++|+.++.+........++.|+++|-- +...              
T Consensus        23 ~~~~~~~~~~l~~~W~~~~~~~l~v~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g-~~~~--------------   87 (395)
T d1nw1a_          23 ERAHMLCARFLGGAWKTVPLEHLRISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYF-NPET--------------   87 (395)
T ss_dssp             HHHHHHHHHHHCTHHHHCCGGGEEEEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEEC-SCCC--------------
T ss_pred             HHHHHHHHHhCcccccCCCccceEEEEcCCccccceEEEEeCCCCccccCCCCcEEEEecC-Ccch--------------
Confidence            345667777788877664 245777899999999999999876322222345678877632 2111              


Q ss_pred             HHccccCccccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCccccc
Q 012848          345 ISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSR  421 (455)
Q Consensus       345 l~~~~P~l~~l~l~e~v~ef~~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~~  421 (455)
                                                .+|-.+|.++++...+.     .+ .|++|  .+.++.++|||++|..++.
T Consensus        88 --------------------------~idr~~E~~i~~~ls~~-----gl-~Pkll--~~~~~g~I~efi~g~~l~~  130 (395)
T d1nw1a_          88 --------------------------ESHLVAESVIFTLLSER-----HL-GPKLY--GIFSGGRLEEYIPSRPLSC  130 (395)
T ss_dssp             --------------------------HHHHHHHHHHHHHHHHT-----TS-SSCEE--EEETTEEEECCCCEEECCT
T ss_pred             --------------------------hhHHHHHHHHHHHHHhC-----CC-CCeEE--EEcCCceEEEEeccccCCh
Confidence                                      01224577777766542     34 68988  4667899999999998874

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=91.33  E-value=0.042  Score=51.53  Aligned_cols=40  Identities=13%  Similarity=-0.012  Sum_probs=33.4

Q ss_pred             cceEEEeEecccCCCCCcCCeEEEEEeeCCCc--ccchHhHHHHHHHHHH
Q 012848          297 IAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV--GESIRRDFVIINLAAK  344 (455)
Q Consensus       297 IAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV--~~~i~~DL~il~~la~  344 (455)
                      =-+||+.++.+        |+.+++||.|||-  .++|..++..|..++.
T Consensus        35 EN~vy~v~~~d--------g~~~VlK~~rp~~~s~~~i~~E~~~l~~L~~   76 (325)
T d1zyla1          35 ENRVYQFQDED--------RRRFVVKFYRPERWTADQILEEHQFALQLVN   76 (325)
T ss_dssp             SSEEEEECCTT--------CCCEEEEEECTTTSCHHHHHHHHHHHHHHHH
T ss_pred             cceeEEEEcCC--------CCEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            36999999965        6899999999984  5678888888888875

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.29  E-value=0.084  Score=49.25  Aligned_cols=48  Identities=15%  Similarity=0.120  Sum_probs=37.0

Q ss_pred             cccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC--cccchHhHHHHHHHHH
Q 012848          289 EAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG--VGESIRRDFVIINLAA  343 (455)
Q Consensus       289 ~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg--V~~~i~~DL~il~~la  343 (455)
                      -+.||.|+-|+||+|+-+.+       |+.|||||.+.+  ..+.+...+.+++.+.
T Consensus        18 ~~~LG~G~fg~Vy~~~~~~~-------g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~   67 (362)
T d1q8ya_          18 VRKLGWGHFSTVWLAKDMVN-------NTHVAMKIVRGDKVYTEAAEDEIKLLQRVN   67 (362)
T ss_dssp             EEEEEECSSEEEEEEEETTT-------TEEEEEEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeeCCCeEEEEEEECCC-------CCEEEEEEEeccccchHHHHHHHHHHHHhc
Confidence            47899999999999998652       699999998765  2345566677776664

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.28  E-value=0.23  Score=47.10  Aligned_cols=29  Identities=17%  Similarity=0.153  Sum_probs=25.3

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRH  325 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqr  325 (455)
                      +.||.|+-|+||+|+-+.+       |+.||||+.+
T Consensus        47 ~~lG~G~fg~Vy~a~~~~~-------g~~~AvK~i~   75 (350)
T d1rdqe_          47 KTLGTGSFGRVMLVKHKES-------GNHYAMKILD   75 (350)
T ss_dssp             EEEEECSSCEEEEEEETTT-------CCEEEEEEEE
T ss_pred             EEeecCcCcEEEEEEECCC-------CCEEEEEEEc
Confidence            6899999999999998752       6999999875

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.01  E-value=0.43  Score=44.04  Aligned_cols=35  Identities=23%  Similarity=0.215  Sum_probs=24.5

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.||.|+-|+||+|+.+.+  |+ ....+||||..+++
T Consensus        15 ~~lG~G~fG~Vy~~~~~~~--~~-~~~~~vavK~~~~~   49 (317)
T d1xkka_          15 KVLGSGAFGTVYKGLWIPE--GE-KVKIPVAIKELREA   49 (317)
T ss_dssp             EEEEECSSEEEEEEEECC-------CCEEEEEEEECC-
T ss_pred             eEEecCCCeEEEEEEEcCC--CC-EEEEEEEEEEeccc
Confidence            6899999999999998752  31 11247889887654

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=90.33  E-value=0.065  Score=48.79  Aligned_cols=30  Identities=17%  Similarity=0.170  Sum_probs=25.6

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.||.|+-|.||+|+.++        |+.||||+.+..
T Consensus         8 ~~iG~G~fg~Vy~~~~~~--------~~~vAvK~i~~~   37 (286)
T d1ob3a_           8 EKIGEGTYGVVYKAQNNY--------GETFALKKIRLE   37 (286)
T ss_dssp             EEEEEETTEEEEEEEETT--------SCEEEEEEECCS
T ss_pred             cEEecCCCcEEEEEEeCC--------CCEEEEEEEehh
Confidence            579999999999998864        699999997543

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.24  E-value=0.12  Score=46.80  Aligned_cols=30  Identities=23%  Similarity=0.285  Sum_probs=26.6

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.||+|+-|-||+|+.++        +++||||+.+.+
T Consensus        10 ~~iG~G~fg~Vy~~~~~~--------~~~vAvK~l~~~   39 (258)
T d1k2pa_          10 KELGTGQFGVVKYGKWRG--------QYDVAIKMIKEG   39 (258)
T ss_dssp             CCCCEETTEEEEEEEETT--------TEEEEEEEEESS
T ss_pred             EEEecCCCeEEEEEEECC--------CCEEEEEEECcC
Confidence            679999999999999864        689999998864

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.93  E-value=0.12  Score=47.61  Aligned_cols=46  Identities=26%  Similarity=0.291  Sum_probs=32.1

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCC-----CcccchHhHHHHHHHH
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHP-----GVGESIRRDFVIINLA  342 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrP-----gV~~~i~~DL~il~~l  342 (455)
                      +.||.|+-|.||+|+-+.+       |+.||||+.+-     +..+.+.+.+.+|+.+
T Consensus        16 ~~LG~G~fg~Vy~a~~~~~-------~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l   66 (318)
T d3blha1          16 AKIGQGTFGEVFKARHRKT-------GQKVALKKVLMENEKEGFPITALREIKILQLL   66 (318)
T ss_dssp             EEEEECSSSEEEEEEETTT-------CCEEEEEEC----CTTSSCHHHHHHHHHHHHC
T ss_pred             EEEecCcCeEEEEEEECCC-------CCEEEEEEEehhhcchHHHHHHHHHHHHHHHh
Confidence            6899999999999998652       69999998642     2333344555555544

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.82  E-value=0.12  Score=47.33  Aligned_cols=31  Identities=26%  Similarity=0.252  Sum_probs=24.1

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +-||.|+-|+||+|+.+.+       |+.||||+.+.+
T Consensus         4 ~~lG~G~fg~Vy~~~~~~~-------~~~vAvK~i~~~   34 (299)
T d1ua2a_           4 DFLGEGQFATVYKARDKNT-------NQIVAIKKIKLG   34 (299)
T ss_dssp             EEEEEETTEEEEEEECSSC-------CSEEEEEEC---
T ss_pred             eEeccCcCeEEEEEEECCC-------CcEEEEEEEehh
Confidence            3589999999999998652       699999997644

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.57  E-value=0.2  Score=45.85  Aligned_cols=31  Identities=23%  Similarity=0.232  Sum_probs=25.2

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +-||.|+-|.||+|+-+.+       |+.||||+.+.+
T Consensus         8 ~~lG~G~fg~Vy~~~~~~~-------~~~vAvK~i~~~   38 (298)
T d1gz8a_           8 EKIGEGTYGVVYKARNKLT-------GEVVALKKIRLD   38 (298)
T ss_dssp             EEEEECSSSEEEEEEETTT-------CCEEEEEEEC--
T ss_pred             cEEecCcCeEEEEEEECCC-------CCEEEEEEEehh
Confidence            5699999999999998652       699999998654

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.24  E-value=0.2  Score=45.48  Aligned_cols=47  Identities=17%  Similarity=0.202  Sum_probs=35.8

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCc---------ccchHhHHHHHHHHH
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGV---------GESIRRDFVIINLAA  343 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV---------~~~i~~DL~il~~la  343 (455)
                      +.||.|+-|.||+|+-+.+       |+.||||+.+.+-         ...+...+.+|+.+.
T Consensus        10 ~~lG~G~fg~Vy~a~~~~~-------~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~   65 (273)
T d1xwsa_          10 PLLGSGGFGSVYSGIRVSD-------NLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVS   65 (273)
T ss_dssp             EEEEEETTEEEEEEEETTT-------CCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHC
T ss_pred             EEEeeCCCeEEEEEEECCC-------CCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhc
Confidence            6899999999999998652       6999999876532         234567777777653

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.46  E-value=0.21  Score=46.94  Aligned_cols=45  Identities=22%  Similarity=0.171  Sum_probs=34.5

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHH
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLA  342 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~l  342 (455)
                      +-||.|+-|.||+|+.+.+       |+.||||+...+- ....+.+.+|+.+
T Consensus        26 k~LG~G~fg~Vy~a~~~~~-------~~~vAiK~i~~~~-~~~~~Ei~il~~l   70 (350)
T d1q5ka_          26 KVIGNGSFGVVYQAKLCDS-------GELVAIKKVLQDK-RFKNRELQIMRKL   70 (350)
T ss_dssp             EEEEEETTEEEEEEEETTT-------CCEEEEEEEECCS-SSCCHHHHHHHHC
T ss_pred             eEEeeCcCeEEEEEEECCC-------CCEEEEEEECccc-hHHHHHHHHHHhc
Confidence            5699999999999998752       6999999987653 3445666666544

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=86.16  E-value=0.77  Score=43.81  Aligned_cols=92  Identities=16%  Similarity=0.046  Sum_probs=57.2

Q ss_pred             ccccccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHH
Q 012848          286 GFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFA  365 (455)
Q Consensus       286 ~fd~~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~  365 (455)
                      .++-++|+-|.+..|||-+..+   |    |+.|+||--.|.++                  ..+.-..+.++.      
T Consensus        28 ~l~~~eig~G~~N~vfrV~~~~---~----~~svivKqa~p~~r------------------~~g~~~~~~~~R------   76 (392)
T d2pula1          28 TLTCQEIGDGNLNYVFHIYDQE---H----DRALIIKQAVPYAK------------------VVGESWPLTIDR------   76 (392)
T ss_dssp             CCEEEECCSSSSEEEEEEEC-----------CEEEEEEECCGGG------------------C--CCCCCCTTH------
T ss_pred             CeeEEEeCCCceEeEEEEEeCC---C----CeEEEEecCCchhc------------------ccCCCCCCCHHH------
Confidence            4567789999999999988754   3    68999997777653                  111100011111      


Q ss_pred             HHHHHhcCHHHHHHHHHHHHHHhCCCCCeEeCcccCCCCCCCeEEeecccCcccc
Q 012848          366 VFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVS  420 (455)
Q Consensus       366 ~~l~~ELDfr~EA~nl~rf~~~f~~~~~V~vP~~~~~lst~rVLVmE~i~G~~i~  420 (455)
                              .+.|++-+..+.+    .....+|++|..-....+++|||++|.++.
T Consensus        77 --------~~~E~~~L~~~~~----~~p~~vP~v~~~d~~~~~lvmE~L~~~~~~  119 (392)
T d2pula1          77 --------ARIESSALIRQGE----HVPHLVPRVFYSDTEMAVTVMEDLSHLKIA  119 (392)
T ss_dssp             --------HHHHHHHHHHHHT----TCGGGSCCEEEEETTTTEEEECCCTTSEEH
T ss_pred             --------HHHHHHHHHHhhh----hCCCCcceEEEEcCCCCEEEEeccCCcccc
Confidence                    1346655554443    234568998864456789999999998764

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.15  E-value=0.24  Score=44.45  Aligned_cols=31  Identities=23%  Similarity=0.235  Sum_probs=26.0

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG  327 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg  327 (455)
                      +.||.|+-|.||+|+-+.+       |+.||||+.+..
T Consensus         8 ~~LG~G~fg~V~~~~~~~~-------~~~vAvK~i~~~   38 (292)
T d1unla_           8 EKIGEGTYGTVFKAKNRET-------HEIVALKRVRLD   38 (292)
T ss_dssp             EEEEECSSSEEEEEEETTT-------CCEEEEEEEESS
T ss_pred             eEEecCcCeEEEEEEECCC-------CcEEEEEEEehh
Confidence            5799999999999998652       699999997544

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.33  E-value=0.55  Score=42.52  Aligned_cols=48  Identities=21%  Similarity=0.189  Sum_probs=34.2

Q ss_pred             ccccccCcceEEEeEecccCCCCCcCCeEEEEEeeCCC-----cccchHhHHHHHHHHH
Q 012848          290 APVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPG-----VGESIRRDFVIINLAA  343 (455)
Q Consensus       290 ~PiASASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPg-----V~~~i~~DL~il~~la  343 (455)
                      +.||.|+-|.||+|+-+.  ++    |+.||||+.+..     ....+.+.+.+|+.+.
T Consensus        13 ~~LG~G~fg~V~~a~~~~--~~----~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~   65 (305)
T d1blxa_          13 AEIGEGAYGKVFKARDLK--NG----GRFVALKRVRVQTGEEGMPLSTIREVAVLRHLE   65 (305)
T ss_dssp             EEEEEETTEEEEEEEETT--TT----TEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHH
T ss_pred             EEEecccCeEEEEEEEEC--CC----CEEEEEEEEehhhccchHHHHHHHHHHHHHHHh
Confidence            469999999999998753  12    688999997643     3334555666666554

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=83.01  E-value=0.85  Score=39.73  Aligned_cols=74  Identities=16%  Similarity=0.035  Sum_probs=48.6

Q ss_pred             ccCcceEEEeEecccCCCCCcCCeEEEEEeeCCCcccchHhHHHHHHHHHHHHccccCccccCHHHHHHHHHHHHHHhcC
Q 012848          294 SGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVD  373 (455)
Q Consensus       294 SASIAQVHrA~Lk~~~~G~~~~G~~VAVKVqrPgV~~~i~~DL~il~~la~l~~~~P~l~~l~l~e~v~ef~~~l~~ELD  373 (455)
                      -+|.+.||+-+..         ++.++||+..++-...                                       -.+
T Consensus        24 G~s~~~v~rv~~~---------~~~~vlk~~~~~~~~~---------------------------------------~~~   55 (263)
T d1j7la_          24 GMSPAKVYKLVGE---------NENLYLKMTDSRYKGT---------------------------------------TYD   55 (263)
T ss_dssp             CCSSSEEEEEECS---------SCEEEEEEECGGGTTS---------------------------------------TTC
T ss_pred             CCCCCcEEEEEeC---------CCeEEEEEcCCCcccc---------------------------------------hhh
Confidence            5667899987643         4678899776653211                                       013


Q ss_pred             HHHHHHHHHHHHHHhCCCCCeEeCcccCCCC--CCCeEEeecccCccccc
Q 012848          374 LAREAAHLSRFIYNFRRWKDVSFPKPVYPLV--HPAVLVETYEQGECVSR  421 (455)
Q Consensus       374 fr~EA~nl~rf~~~f~~~~~V~vP~~~~~ls--t~rVLVmE~i~G~~i~~  421 (455)
                      +..|++.++.+.+      .+.+|+++.-..  ....++||+++|.++.+
T Consensus        56 ~~~E~~~l~~l~~------~vpvP~vl~~~~~~~~~~lv~~~l~G~~~~~   99 (263)
T d1j7la_          56 VEREKDMMLWLEG------KLPVPKVLHFERHDGWSNLLMSEADGVLCSE   99 (263)
T ss_dssp             HHHHHHHHHHHTT------TSCCCCEEEEEEETTEEEEEEECCSSEEHHH
T ss_pred             HHHHHHHHHHHhc------cCCCCcEEEEEecCCceEEEEEecccccccc
Confidence            5667666665432      477899985222  33579999999998865