Citrus Sinensis ID: 012864

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-----
MIWGIVRRKITSAQVIGQSVSKIGPRCHATAQKEAILTCRGFQRVQRSSYHILSGNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKLIAKEGETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKTPSEPPPTAKKPTSPPSKPMASEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI
ccccHHHHccccccHHccccccccccccccHHHHHHHHHccccccccccEEEcccccccccccHHHHHHHHcccccccccccccccccccEEEEcccccccccEEEEEEEEcccccEEEccccEEEEEccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccEEEcccEEEccccEEEEEEEccccEEEEcccccccccHHHHHHHHHHHHHHHHcccccccccccccEEEccccccccccccccccccHHHHccccccccccEEEccEEEEccccEEccccccccccccHHHHHHHHHHHHHccHHHHHccc
ccEEEEEEEccHHHHHHHHHHHHccccccccHHHHHHccccccccccEEEEEccccccccccccccEEEccccccEEEEEcccccccccEEEEEcccccccHHHHHHHHHHccccccccccccEEEEEccEEEEEcccccccccEEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHcHHHHHHHHHHHHHHHcccEEEEEccccEEEcccccEEEcEEEccEEEccEEccHHHccHHHHHHHHHHHHHHHHcccccHHHHccccEEEEEccccccccccccccccccEEEEEcccEEEEEEccccEEEEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHcHHHHHccc
MIWGIVRRKITSAQVIGqsvskigprchatAQKEAILTCRgfqrvqrssyhilsgnyvcstpRSEVIELIQkgsfigsrsrlfssdsgdlvDAVVpfmgesitdgTLAKFLkqpgdrvemdepiaQIETDKLIakegetvepgAKIAVISKSGEGVAQAASAEkaaaqpppaeekpsaekqtpeseaapavkdktpseppptakkptsppskpmasepqlppkdrerrvpmTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALqhqpvvnavidgddiiyrdYIDISFAvgtkkglvvpvirnsermnFAEIEKEISTLAKKandgsisidemaggtftisnggvygsllstpiinppqsailgmhsivnrpmvvggnvvprpMMYIALTYDHRLIDGREAVFFLRRIKDIVEDprrllldi
miwgivrrkitsaqvigqsvskigprCHATAQKEAILTCRGFQRVQRSSYHILSGNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFmgesitdgtLAKFLKQPGDRVEMDEPIAQIETDKLIAKEGETVEPGAKIAVISKSGEGVAQAASAEkaaaqpppaeekpsaekqtpeseaapavkdktpseppptakkptsppskpmasepqlppkdrerrvpmTRLRKRvatrlkdsqntfallttfnevdmtNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISfavgtkkglvvpvirnsermnFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRrikdivedprrllldi
MIWGIVRRKITSAQVIGQSVSKIGPRCHATAQKEAILTCRGFQRVQRSSYHILSGNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKLIAKEGETVEPGAKIAVISKSGEGVaqaasaekaaaqpppaeekpsaekqTPESEAAPAVKDktpseppptakkptsppskpMASEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVidgddiiyrdyidiSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI
*IWGIVRRKITSAQVIGQSVSKIGPRCHATAQKEAILTCRGFQRVQRSSYHILSGNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLK*************************************************************************************************************************************QNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAK***DGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVED********
**************************************************************************FIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKLIAKEGETVEPGAKI***************************************************************************************LRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI
MIWGIVRRKITSAQVIGQSVSKIGPRCHATAQKEAILTCRGFQRVQRSSYHILSGNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKLIAKEGETVEPGAKIAVISK*************************************************************************RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI
MIWGIVRRKITSAQVIGQSVSKIGPRCHATAQKEAILTCRGFQRVQRSSYHILSGNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKLIAKEGETVEPGAKIAVISK*****************************************************************************VPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIWGIVRRKITSAQVIGQSVSKIGPRCHATAQKEAILTCRGFQRVQRSSYHILSGNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKLIAKEGETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKTPSEPPPTAKKPTSPPSKPMASEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query455 2.2.26 [Sep-21-2011]
Q8H107464 Dihydrolipoyllysine-resid yes no 0.863 0.846 0.672 1e-156
Q9FLQ4464 Dihydrolipoyllysine-resid no no 0.824 0.808 0.716 1e-156
Q6FYD4410 Dihydrolipoyllysine-resid yes no 0.782 0.868 0.459 6e-97
Q90512409 Dihydrolipoyllysine-resid N/A no 0.778 0.865 0.503 9e-96
Q92J43395 Dihydrolipoyllysine-resid yes no 0.802 0.924 0.473 1e-95
P11179455 Dihydrolipoyllysine-resid yes no 0.793 0.793 0.520 2e-95
Q1RHI5400 Dihydrolipoyllysine-resid yes no 0.780 0.887 0.477 6e-95
Q4UKI7401 Dihydrolipoyllysine-resid yes no 0.795 0.902 0.460 2e-94
Q9N0F1455 Dihydrolipoyllysine-resid yes no 0.8 0.8 0.511 1e-93
Q9D2G2454 Dihydrolipoyllysine-resid yes no 0.839 0.841 0.491 2e-93
>sp|Q8H107|ODO2B_ARATH Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial OS=Arabidopsis thaliana GN=At4g26910 PE=1 SV=2 Back     alignment and function desciption
 Score =  553 bits (1424), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 286/425 (67%), Positives = 330/425 (77%), Gaps = 32/425 (7%)

Query: 49  SYHILS---GNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDG 105
           S+H L+   GN   S   S V   +Q+        R FS+++GD V+AVVP MGESITDG
Sbjct: 54  SFHNLALPAGNSGISRSASLVSSTLQRWV------RPFSAETGDTVEAVVPHMGESITDG 107

Query: 106 TLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVIS 150
           TLA FLK+PG+RV+ DE IAQIETDK                +  EG+TVEPG K+A+IS
Sbjct: 108 TLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVNEGDTVEPGTKVAIIS 167

Query: 151 KSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKTPSEPPPTAKKPTSPP 210
           KS +  +Q   ++K           P+ +KQ P  E+AP  +              + PP
Sbjct: 168 KSEDTASQVTPSQKIPETTDTKPSPPAEDKQKPRVESAPVAEK--------PKAPSSPPP 219

Query: 211 SKPMASEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDY 270
            K  A EPQLPPK+RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRS Y
Sbjct: 220 PKQSAKEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQY 279

Query: 271 KDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLV 330
           KDAF EKHGVKLGLMSGF+KAAVSALQHQPVVNAVIDGDDIIYRDY+DIS AVGT KGLV
Sbjct: 280 KDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLV 339

Query: 331 VPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINP 390
           VPVIR +++MNFAEIEK I++LAKKAN+G+ISIDEMAGG+FT+SNGGVYGSL+STPIINP
Sbjct: 340 VPVIRGADKMNFAEIEKTINSLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINP 399

Query: 391 PQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRR 450
           PQSAILGMHSIV+RPMVVGG+VVPRPMMY+ALTYDHRLIDGREAV+FLRR+KD+VEDP+R
Sbjct: 400 PQSAILGMHSIVSRPMVVGGSVVPRPMMYVALTYDHRLIDGREAVYFLRRVKDVVEDPQR 459

Query: 451 LLLDI 455
           LLLDI
Sbjct: 460 LLLDI 464
The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 6EC: 1
>sp|Q9FLQ4|ODO2A_ARATH Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial OS=Arabidopsis thaliana GN=At5g55070 PE=1 SV=1 Back     alignment and function description
>sp|Q6FYD4|ODO2_BARQU Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Bartonella quintana (strain Toulouse) GN=sucB PE=3 SV=1 Back     alignment and function description
>sp|Q90512|ODO2_TAKRU Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial (Fragment) OS=Takifugu rubripes GN=dlst PE=3 SV=1 Back     alignment and function description
>sp|Q92J43|ODO2_RICCN Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=sucB PE=3 SV=1 Back     alignment and function description
>sp|P11179|ODO2_BOVIN Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Bos taurus GN=DLST PE=1 SV=2 Back     alignment and function description
>sp|Q1RHI5|ODO2_RICBR Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Rickettsia bellii (strain RML369-C) GN=sucB PE=3 SV=1 Back     alignment and function description
>sp|Q4UKI7|ODO2_RICFE Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=sucB PE=3 SV=1 Back     alignment and function description
>sp|Q9N0F1|ODO2_PIG Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Sus scrofa GN=DLST PE=1 SV=1 Back     alignment and function description
>sp|Q9D2G2|ODO2_MOUSE Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Mus musculus GN=Dlst PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query455
118489496474 unknown [Populus trichocarpa x Populus d 0.984 0.945 0.715 1e-179
302144114 562 unnamed protein product [Vitis vinifera] 0.978 0.791 0.688 1e-175
359483352473 PREDICTED: dihydrolipoyllysine-residue s 0.978 0.940 0.688 1e-175
224116582467 predicted protein [Populus trichocarpa] 0.973 0.948 0.686 1e-174
255578100469 dihydrolipoamide succinyltransferase com 0.967 0.938 0.659 1e-171
356501546464 PREDICTED: dihydrolipoyllysine-residue s 0.958 0.939 0.674 1e-171
356552986461 PREDICTED: dihydrolipoyllysine-residue s 0.960 0.947 0.667 1e-168
449444056469 PREDICTED: dihydrolipoyllysine-residue s 0.967 0.938 0.650 1e-167
224061043434 predicted protein [Populus trichocarpa] 0.898 0.942 0.643 1e-163
357445475453 Dihydrolipoyllysine-residue succinyltran 0.962 0.966 0.637 1e-162
>gi|118489496|gb|ABK96550.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 344/481 (71%), Positives = 379/481 (78%), Gaps = 33/481 (6%)

Query: 1   MIWGIVRRKITSAQVIGQSVSKI---GPRCHATAQKEAILTCRGFQR-VQRSSYHILSGN 56
           MIWGI+RR + S+Q    SVS+I     R     Q E +   +G +  V   SY    G+
Sbjct: 1   MIWGIIRRNLASSQ----SVSRIKHPAIRPRGYGQNELLSNGKGCRHAVGSFSYCTSLGS 56

Query: 57  YVC----STPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLK 112
             C    + PR E+  +++   FI  RSR FSSD+GDLVDAVVPFMGESITDGTLAKFLK
Sbjct: 57  QCCRAYSNKPRREITAMLRPEYFIPLRSRSFSSDTGDLVDAVVPFMGESITDGTLAKFLK 116

Query: 113 QPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKSGEGVA 157
            PGDRVE+DEPIAQIETDK               L+AKEGETVEPG KIAVISKSGEGV 
Sbjct: 117 NPGDRVEVDEPIAQIETDKVTIDVASPEAGTIQQLVAKEGETVEPGTKIAVISKSGEGVP 176

Query: 158 QAA--SAEKAAAQPPPAEEKPSAEKQTPESEAAPAV-KDKTPSEPPPTAKKPTSPPSKPM 214
           QAA  S EK A+QPPP  EK S  K T ++E +    K+KT   P P A+   +P S P 
Sbjct: 177 QAAPPSQEKTASQPPPPAEKESIGKGTTKTETSSLKGKEKTLFPPQPAAR---APSSPPK 233

Query: 215 ASEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAF 274
            SEPQLPPK+RERRVPMTRLRKRVATRLKDSQNTFA+LTTFNEVDMTNLMKLRSDYKDAF
Sbjct: 234 PSEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSDYKDAF 293

Query: 275 LEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVI 334
           +EKHGVK G MSGFVKAAVSALQ+QPVVNAVIDGDDIIYRDYIDIS AVGT KGLVVPVI
Sbjct: 294 VEKHGVKFGFMSGFVKAAVSALQYQPVVNAVIDGDDIIYRDYIDISIAVGTPKGLVVPVI 353

Query: 335 RNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSA 394
           RNS++MNFAEIEK I+TLAKKA  G+ISIDEMAGGTFTISNGGVYGSLLS PIINPPQSA
Sbjct: 354 RNSDQMNFAEIEKNINTLAKKATAGTISIDEMAGGTFTISNGGVYGSLLSMPIINPPQSA 413

Query: 395 ILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 454
           ILGMHSIV RPMVVGGN+VPRPMMYIALTYDHRLIDGREAV+FLRRIKD+VEDPRRLLLD
Sbjct: 414 ILGMHSIVTRPMVVGGNIVPRPMMYIALTYDHRLIDGREAVYFLRRIKDVVEDPRRLLLD 473

Query: 455 I 455
           +
Sbjct: 474 V 474

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|302144114|emb|CBI23219.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359483352|ref|XP_002266593.2| PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [Vitis vinifera] Back     alignment and taxonomy information
>gi|224116582|ref|XP_002317337.1| predicted protein [Populus trichocarpa] gi|222860402|gb|EEE97949.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255578100|ref|XP_002529920.1| dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase, putative [Ricinus communis] gi|223530597|gb|EEF32474.1| dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356501546|ref|XP_003519585.1| PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|356552986|ref|XP_003544840.1| PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|449444056|ref|XP_004139791.1| PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Cucumis sativus] gi|449517675|ref|XP_004165870.1| PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224061043|ref|XP_002300330.1| predicted protein [Populus trichocarpa] gi|222847588|gb|EEE85135.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357445475|ref|XP_003593015.1| Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [Medicago truncatula] gi|355482063|gb|AES63266.1| Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [Medicago truncatula] gi|388493976|gb|AFK35054.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query455
TAIR|locus:2161670464 AT5G55070 [Arabidopsis thalian 0.947 0.928 0.601 4.3e-125
TAIR|locus:2116432464 AT4G26910 [Arabidopsis thalian 0.806 0.790 0.656 2.4e-124
TIGR_CMR|SPO_0343398 SPO_0343 "2-oxoglutarate dehyd 0.529 0.605 0.579 2.5e-81
UNIPROTKB|P11179455 DLST "Dihydrolipoyllysine-resi 0.505 0.505 0.633 7.4e-80
ZFIN|ZDB-GENE-030326-1458 dlst "dihydrolipoamide S-succi 0.784 0.779 0.444 2.5e-79
MGI|MGI:1926170454 Dlst "dihydrolipoamide S-succi 0.505 0.506 0.629 2.5e-79
UNIPROTKB|E2R0H0455 DLST "Uncharacterized protein" 0.505 0.505 0.633 4.1e-79
CGD|CAL0005983441 KGD2 [Candida albicans (taxid: 0.501 0.517 0.585 4.1e-79
UNIPROTKB|Q59RQ8441 KGD2 "Putative uncharacterized 0.501 0.517 0.585 4.1e-79
UNIPROTKB|Q9N0F1455 DLST "Dihydrolipoyllysine-resi 0.505 0.505 0.629 6.6e-79
TAIR|locus:2161670 AT5G55070 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1229 (437.7 bits), Expect = 4.3e-125, P = 4.3e-125
 Identities = 282/469 (60%), Positives = 325/469 (69%)

Query:     8 RKITSAQVIGQSVSK----IGPRCHATAQKEAILTCRGFQRVQRSSYHILS--GNYVCST 61
             R  +SA  +G+S+      +  + H+ +  E ++  RG       S+H  S  G   CS 
Sbjct:    13 RGSSSASGLGKSLQSSRVAVSAQFHSVSATETLVP-RGNHA---HSFHHRSCPGCPDCS- 67

Query:    62 PRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMD 121
              R+ +I   Q G+ +    R FSSDSGD+V+AVVP MGESITDGTLA FLK+PGDRVE D
Sbjct:    68 -RT-IINGYQ-GTALQRWVRPFSSDSGDVVEAVVPHMGESITDGTLAAFLKKPGDRVEAD 124

Query:   122 EPIAQIETDKL---------------IAKEGETVEPGAKIAVISKSGEGVXXXXXXXXXX 166
             E IAQIETDK+               + KEG+TVEPG K+A IS S + V          
Sbjct:   125 EAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGNKVARISTSADAVSHVAPSEKAP 184

Query:   167 XXXXXXXXXXXXXXXTPESEAAPAVKDXXXXXXXXXXXXXXXXXXXXMASEPQLPPKDRE 226
                            +P +E  P V+                      A EPQLPPKDRE
Sbjct:   185 EKPAPKP--------SPPAEK-PKVESTKVAEKPKAPSPPPPPPSKQSAKEPQLPPKDRE 235

Query:   227 RRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMS 286
             RRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRS YKDAFLEKHGVKLGLMS
Sbjct:   236 RRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFLEKHGVKLGLMS 295

Query:   287 GFVKAAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIE 346
             GF+KAAVSALQHQPVVNAV              S AVGT KGLVVPVIR++++MNFA+IE
Sbjct:   296 GFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVPVIRDADKMNFADIE 355

Query:   347 KEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPM 406
             K I+ LAKKA +G+ISIDEMAGG+FT+SNGGVYGSL+STPIINPPQSAILGMHSIV RPM
Sbjct:   356 KTINGLAKKATEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVQRPM 415

Query:   407 VVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 455
             VVGG+VVPRPMMY+ALTYDHRLIDGREAV+FLRRIKD+VEDP+RLLLDI
Sbjct:   416 VVGGSVVPRPMMYVALTYDHRLIDGREAVYFLRRIKDVVEDPQRLLLDI 464
GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006099 "tricarboxylic acid cycle" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA;ISS
GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA;ISS
GO:0045252 "oxoglutarate dehydrogenase complex" evidence=IEA
GO:0006979 "response to oxidative stress" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0008270 "zinc ion binding" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
TAIR|locus:2116432 AT4G26910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0343 SPO_0343 "2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|P11179 DLST "Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030326-1 dlst "dihydrolipoamide S-succinyltransferase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1926170 Dlst "dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2R0H0 DLST "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
CGD|CAL0005983 KGD2 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59RQ8 KGD2 "Putative uncharacterized protein KGD2" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
UNIPROTKB|Q9N0F1 DLST "Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q89AJ6ODO2_BUCBP2, ., 3, ., 1, ., 6, 10.39360.80650.8951yesno
P36957ODO2_HUMAN2, ., 3, ., 1, ., 6, 10.52180.79780.8013yesno
O94681ODO2_SCHPO2, ., 3, ., 1, ., 6, 10.43530.86590.8716yesno
Q9FLQ4ODO2A_ARATH2, ., 3, ., 1, ., 6, 10.71670.82410.8081nono
Q9D2G2ODO2_MOUSE2, ., 3, ., 1, ., 6, 10.49140.83950.8414yesno
Q92J43ODO2_RICCN2, ., 3, ., 1, ., 6, 10.47320.80210.9240yesno
Q01205ODO2_RAT2, ., 3, ., 1, ., 6, 10.49620.81310.8149yesno
P11179ODO2_BOVIN2, ., 3, ., 1, ., 6, 10.52040.79340.7934yesno
Q8H107ODO2B_ARATH2, ., 3, ., 1, ., 6, 10.67290.86370.8469yesno
P20708ODO2_AZOVI2, ., 3, ., 1, ., 6, 10.47850.80210.9147yesno
Q9N0F1ODO2_PIG2, ., 3, ., 1, ., 6, 10.51150.80.8yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.3.1.610.991
3rd Layer2.3.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_XI2803
hypothetical protein (467 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pg.C_LG_VIII0421
hypothetical protein (1021 aa)
• ••••• 0.993
estExt_Genewise1_v1.C_LG_X2288
hypothetical protein (1021 aa)
• ••••• 0.992
LPD1
precursor of dehydrogenase dihydrolipoamide dehydrogenase 1 (EC-1.8.1.4) (511 aa)
• ••••• 0.979
estExt_Genewise1_v1.C_LG_XIV0188
succinate-CoA ligase, beta subunit (EC-6.2.1.5 6.2.1.4) (422 aa)
•  • •• 0.953
eugene3.00002649
succinate-CoA ligase, beta subunit (EC-6.2.1.5 6.2.1.4) (421 aa)
•  • •• 0.953
LPD3
precursor of dehydrogenase dihydrolipoamide dehydrogenase 3 (EC-1.8.1.4) (527 aa)
• •  •• 0.939
LPD4
precursor of dehydrogenase dihydrolipoamide dehydrogenase 4 (EC-1.8.1.4) (529 aa)
• •  •• 0.938
estExt_fgenesh4_pm.C_LG_V0127
succinate-CoA ligase (GDP-forming) (EC-6.2.1.5) (298 aa)
•  • •• 0.922
gw1.XII.1248.1
succinate-CoA ligase (GDP-forming) (EC-6.2.1.5) (293 aa)
•  • •• 0.921
estExt_fgenesh4_pg.C_1220019
succinate-CoA ligase (GDP-forming) (330 aa)
•  • •• 0.918

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query455
PLN02226463 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E 0.0
PRK05704407 PRK05704, PRK05704, dihydrolipoamide succinyltrans 0.0
PTZ00144418 PTZ00144, PTZ00144, dihydrolipoamide succinyltrans 0.0
TIGR01347403 TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp 1e-164
COG0508404 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena 1e-122
PRK11856411 PRK11856, PRK11856, branched-chain alpha-keto acid 1e-112
pfam00198212 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases 3e-92
PRK11855547 PRK11855, PRK11855, dihydrolipoamide acetyltransfe 1e-90
PRK11854633 PRK11854, aceF, pyruvate dehydrogenase dihydrolipo 2e-70
TIGR02927579 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena 2e-69
TIGR01349436 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase 2e-61
PRK11857306 PRK11857, PRK11857, dihydrolipoamide acetyltransfe 4e-56
TIGR01348546 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase 2e-55
PRK14843347 PRK14843, PRK14843, dihydrolipoamide acetyltransfe 1e-48
PLN02744539 PLN02744, PLN02744, dihydrolipoyllysine-residue ac 1e-41
PLN02528416 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase 2e-34
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 3e-21
cd0684974 cd06849, lipoyl_domain, Lipoyl domain of the dihyd 3e-16
PRK11855 547 PRK11855, PRK11855, dihydrolipoamide acetyltransfe 2e-15
PRK11892464 PRK11892, PRK11892, pyruvate dehydrogenase subunit 1e-14
TIGR02927 579 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena 3e-14
PRK14875371 PRK14875, PRK14875, acetoin dehydrogenase E2 subun 2e-08
PRK11854 633 PRK11854, aceF, pyruvate dehydrogenase dihydrolipo 1e-07
PRK11854 633 PRK11854, aceF, pyruvate dehydrogenase dihydrolipo 3e-07
pfam0036473 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme 2e-06
TIGR01348 546 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase 2e-05
PRK12373400 PRK12373, PRK12373, NADH dehydrogenase subunit E; 2e-05
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 2e-04
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 6e-04
PRK14951618 PRK14951, PRK14951, DNA polymerase III subunits ga 0.001
PRK14948620 PRK14948, PRK14948, DNA polymerase III subunits ga 0.002
PRK108111068 PRK10811, rne, ribonuclease E; Reviewed 0.002
PRK14951618 PRK14951, PRK14951, DNA polymerase III subunits ga 0.003
cd0666373 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_ 0.003
PRK11633226 PRK11633, PRK11633, cell division protein DedD; Pr 0.004
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 0.004
COG0810244 COG0810, TonB, Periplasmic protein TonB, links inn 0.004
>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component Back     alignment and domain information 
 Score =  556 bits (1433), Expect = 0.0
 Identities = 287/391 (73%), Positives = 324/391 (82%), Gaps = 25/391 (6%)

Query: 81  RLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKL-------- 132
           R FSS+SGD V+AVVP MGESITDGTLA FLK+PG+RV+ DE IAQIETDK+        
Sbjct: 82  RPFSSESGDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPA 141

Query: 133 -------IAKEGETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPES 185
                  + KEG+TVEPG K+A+ISKS +  +Q   ++K      P    P+ +KQ P+ 
Sbjct: 142 SGVIQEFLVKEGDTVEPGTKVAIISKSEDAASQVTPSQKIPETTDPKPSPPAEDKQKPKV 201

Query: 186 EAAP-AVKDKTPSEPPPTAKKPTSPPSKPMASEPQLPPKDRERRVPMTRLRKRVATRLKD 244
           E+AP A K K PS PPP          K  A EPQLPPK+RERRVPMTRLRKRVATRLKD
Sbjct: 202 ESAPVAEKPKAPSSPPP---------PKQSAKEPQLPPKERERRVPMTRLRKRVATRLKD 252

Query: 245 SQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA 304
           SQNTFALLTTFNEVDMTNLMKLRS YKDAF EKHGVKLGLMSGF+KAAVSALQHQPVVNA
Sbjct: 253 SQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNA 312

Query: 305 VIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISID 364
           VIDGDDIIYRDY+DIS AVGT KGLVVPVIR +++MNFAEIEK I+ LAKKAN+G+ISID
Sbjct: 313 VIDGDDIIYRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIEKTINGLAKKANEGTISID 372

Query: 365 EMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTY 424
           EMAGG+FT+SNGGVYGSL+STPIINPPQSAILGMHSIV+RPMVVGG+VVPRPMMY+ALTY
Sbjct: 373 EMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVVGGSVVPRPMMYVALTY 432

Query: 425 DHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 455
           DHRLIDGREAV+FLRR+KD+VEDP+RLLLDI
Sbjct: 433 DHRLIDGREAVYFLRRVKDVVEDPQRLLLDI 463

Length = 463
>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated Back     alignment and domain information
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) Back     alignment and domain information
>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed Back     alignment and domain information
>gnl|CDD|215782 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Back     alignment and domain information
>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated Back     alignment and domain information
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase Back     alignment and domain information
>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form Back     alignment and domain information
>gnl|CDD|237002 PRK11857, PRK11857, dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form Back     alignment and domain information
>gnl|CDD|184847 PRK14843, PRK14843, dihydrolipoamide acetyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex Back     alignment and domain information
>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases Back     alignment and domain information
>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase Back     alignment and domain information
>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated Back     alignment and domain information
>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated Back     alignment and domain information
>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme Back     alignment and domain information
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form Back     alignment and domain information
>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS) Back     alignment and domain information
>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 455
PLN02226463 2-oxoglutarate dehydrogenase E2 component 100.0
PRK05704407 dihydrolipoamide succinyltransferase; Validated 100.0
PTZ00144418 dihydrolipoamide succinyltransferase; Provisional 100.0
TIGR01347403 sucB 2-oxoglutarate dehydrogenase complex dihydrol 100.0
PLN02744539 dihydrolipoyllysine-residue acetyltransferase comp 100.0
KOG0559457 consensus Dihydrolipoamide succinyltransferase (2- 100.0
TIGR02927590 SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo 100.0
PLN02528416 2-oxoisovalerate dehydrogenase E2 component 100.0
COG0508404 AceF Pyruvate/2-oxoglutarate dehydrogenase complex 100.0
KOG0558474 consensus Dihydrolipoamide transacylase (alpha-ket 100.0
TIGR01349435 PDHac_trf_mito pyruvate dehydrogenase complex dihy 100.0
TIGR01348546 PDHac_trf_long pyruvate dehydrogenase complex dihy 100.0
PRK11854633 aceF pyruvate dehydrogenase dihydrolipoyltransacet 100.0
PRK11856411 branched-chain alpha-keto acid dehydrogenase subun 100.0
PRK11855547 dihydrolipoamide acetyltransferase; Reviewed 100.0
KOG0557470 consensus Dihydrolipoamide acetyltransferase [Ener 100.0
PRK14843347 dihydrolipoamide acetyltransferase; Provisional 100.0
PF00198231 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransfe 100.0
PRK11857306 dihydrolipoamide acetyltransferase; Reviewed 100.0
PRK12270 1228 kgd alpha-ketoglutarate decarboxylase; Reviewed 100.0
PRK13757219 chloramphenicol acetyltransferase; Provisional 99.79
PF00302206 CAT: Chloramphenicol acetyltransferase; InterPro: 99.79
PRK11892464 pyruvate dehydrogenase subunit beta; Provisional 99.53
PF0036474 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: 99.49
COG4845219 Chloramphenicol O-acetyltransferase [Defense mecha 99.48
PRK14875371 acetoin dehydrogenase E2 subunit dihydrolipoyllysi 99.43
PRK0674883 hypothetical protein; Validated 99.34
TIGR02927 590 SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo 99.18
PRK11854 633 aceF pyruvate dehydrogenase dihydrolipoyltransacet 99.13
PRK0588971 putative acetyl-CoA carboxylase biotin carboxyl ca 99.05
PRK11855 547 dihydrolipoamide acetyltransferase; Reviewed 98.97
cd0666373 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar 98.92
PRK0822570 acetyl-CoA carboxylase biotin carboxyl carrier pro 98.91
TIGR01348 546 PDHac_trf_long pyruvate dehydrogenase complex dihy 98.85
PRK06549130 acetyl-CoA carboxylase biotin carboxyl carrier pro 98.58
PRK05641153 putative acetyl-CoA carboxylase biotin carboxyl ca 98.54
cd0684974 lipoyl_domain Lipoyl domain of the dihydrolipoyl a 98.51
PRK0705180 hypothetical protein; Validated 98.48
PLN02983274 biotin carboxyl carrier protein of acetyl-CoA carb 98.48
COG0511140 AccB Biotin carboxyl carrier protein [Lipid metabo 98.45
cd0685067 biotinyl_domain The biotinyl-domain or biotin carb 98.42
PRK14042596 pyruvate carboxylase subunit B; Provisional 98.34
TIGR00531156 BCCP acetyl-CoA carboxylase, biotin carboxyl carri 98.32
PRK06302155 acetyl-CoA carboxylase biotin carboxyl carrier pro 98.25
TIGR027121201 urea_carbox urea carboxylase. Members of this fami 98.16
TIGR01108582 oadA oxaloacetate decarboxylase alpha subunit. Thi 98.0
TIGR012351143 pyruv_carbox pyruvate carboxylase. This enzyme pla 97.96
PRK14040593 oxaloacetate decarboxylase; Provisional 97.93
PRK09282592 pyruvate carboxylase subunit B; Validated 97.69
PRK129991146 pyruvate carboxylase; Reviewed 97.48
PF1353350 Biotin_lipoyl_2: Biotin-lipoyl like 97.36
COG4770645 Acetyl/propionyl-CoA carboxylase, alpha subunit [L 96.88
PRK0822570 acetyl-CoA carboxylase biotin carboxyl carrier pro 95.81
PRK10559310 p-hydroxybenzoic acid efflux subunit AaeA; Provisi 95.71
COG10381149 PycA Pyruvate carboxylase [Energy production and c 95.6
cd0684896 GCS_H Glycine cleavage H-protein. Glycine cleavage 95.34
PRK0674883 hypothetical protein; Validated 95.24
TIGR01730322 RND_mfp RND family efflux transporter, MFP subunit 95.2
KOG0368 2196 consensus Acetyl-CoA carboxylase [Lipid transport 95.02
KOG0238670 consensus 3-Methylcrotonyl-CoA carboxylase, biotin 94.53
PRK09783409 copper/silver efflux system membrane fusion protei 94.07
PF07247480 AATase: Alcohol acetyltransferase; InterPro: IPR01 93.95
PRK0705180 hypothetical protein; Validated 93.84
KOG03691176 consensus Pyruvate carboxylase [Energy production 93.69
PRK09578385 periplasmic multidrug efflux lipoprotein precursor 93.64
PRK15030397 multidrug efflux system transporter AcrA; Provisio 93.05
TIGR02971327 heterocyst_DevB ABC exporter membrane fusion prote 92.79
PRK00624114 glycine cleavage system protein H; Provisional 92.65
PRK09859385 multidrug efflux system protein MdtE; Provisional 92.64
PF12700328 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 92.56
PRK1278484 hypothetical protein; Provisional 92.43
TIGR00998334 8a0101 efflux pump membrane protein (multidrug res 91.98
PF0036474 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: 91.87
TIGR03077110 not_gcvH glycine cleavage protein H-like protein, 91.86
PRK0588971 putative acetyl-CoA carboxylase biotin carboxyl ca 91.86
PF0783175 PYNP_C: Pyrimidine nucleoside phosphorylase C-term 91.74
KOG0559457 consensus Dihydrolipoamide succinyltransferase (2- 91.48
COG0511140 AccB Biotin carboxyl carrier protein [Lipid metabo 91.39
PRK11556415 multidrug efflux system subunit MdtA; Provisional 91.23
PRK13380144 glycine cleavage system protein H; Provisional 90.56
PF00529305 HlyD: HlyD family secretion protein the correspond 90.56
PRK06549130 acetyl-CoA carboxylase biotin carboxyl carrier pro 90.34
PRK03598331 putative efflux pump membrane fusion protein; Prov 89.64
PRK15136390 multidrug efflux system protein EmrA; Provisional 89.23
TIGR00531156 BCCP acetyl-CoA carboxylase, biotin carboxyl carri 89.08
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 88.91
PF0274988 QRPTase_N: Quinolinate phosphoribosyl transferase, 88.9
PRK06302155 acetyl-CoA carboxylase biotin carboxyl carrier pro 88.7
PRK10476346 multidrug resistance protein MdtN; Provisional 88.68
TIGR02946446 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This b 88.35
PRK11578370 macrolide transporter subunit MacA; Provisional 87.87
PLN02226463 2-oxoglutarate dehydrogenase E2 component 87.79
PRK01202127 glycine cleavage system protein H; Provisional 87.55
PLN02983274 biotin carboxyl carrier protein of acetyl-CoA carb 86.82
PRK09439169 PTS system glucose-specific transporter subunit; P 86.81
TIGR03309256 matur_yqeB selenium-dependent molybdenum hydroxyla 86.48
TIGR00527127 gcvH glycine cleavage system H protein. The genome 86.05
PF13437105 HlyD_3: HlyD family secretion protein 85.87
PRK09824627 PTS system beta-glucoside-specific transporter sub 85.56
COG0509131 GcvH Glycine cleavage system H protein (lipoate-bi 85.41
PF1353350 Biotin_lipoyl_2: Biotin-lipoyl like 85.39
TIGR03794421 NHPM_micro_HlyD NHPM bacteriocin system secretion 85.19
COG2190156 NagE Phosphotransferase system IIA components [Car 84.81
PRK05641153 putative acetyl-CoA carboxylase biotin carboxyl ca 83.44
TIGR01000457 bacteriocin_acc bacteriocin secretion accessory pr 83.32
cd0685067 biotinyl_domain The biotinyl-domain or biotin carb 83.16
cd00210124 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose s 82.46
TIGR01995610 PTS-II-ABC-beta PTS system, beta-glucoside-specifi 81.97
PF00358132 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar ph 80.93
COG0845372 AcrA Membrane-fusion protein [Cell envelope biogen 80.76
TIGR00830121 PTBA PTS system, glucose subfamily, IIA component. 80.75
>PLN02226 2-oxoglutarate dehydrogenase E2 component Back     alignment and domain information 
Probab=100.00  E-value=3.5e-90  Score=718.84  Aligned_cols=436  Identities=69%  Similarity=1.035  Sum_probs=337.2

Q ss_pred             Ccc-ceeeeccc---cceeecccccccCCC---cccccceee--eeeccceeeEeccceecc-cCcc-cccCCchhhHHh
Q 012864            1 MIW-GIVRRKIT---SAQVIGQSVSKIGPR---CHATAQKEA--ILTCRGFQRVQRSSYHIL-SGNY-VCSTPRSEVIEL   69 (455)
Q Consensus         1 ~~~-~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~s~~~~-~~~~-~~~~~~~~~~~~   69 (455)
                      ||+ +++||.-+   |+|+.+.+++.-+-.   |.-.|-++.  +++-+...|    |+|-+ -++| .|..+.+.    
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~----   72 (463)
T PLN02226          1 MMLRAVIRRASTRGSSPSLFGKSLQSSRVAASSPSLLSGSETGALLHRGNHAH----SFHNLALPGNSGISRSASL----   72 (463)
T ss_pred             CcHHHHHHhhccCCCChhhhhhhhhhchhhccCcccccccccchhhhcccccc----chhhcccCCccccCCchhh----
Confidence            554 55565544   899998888776533   333333322  222222222    23321 1111 22222111    


Q ss_pred             hhcccccccccccccCCCCceEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eec
Q 012864           70 IQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIA  134 (455)
Q Consensus        70 ~~~~~~~~~~~r~~~~~~~~~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~  134 (455)
                        -...+++|.|.|....+.+++|+||+||++|+||+|.+|+|++||.|++||+||+|||||               |++
T Consensus        73 --~~~~~~~~~~~~~~~~~~m~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv  150 (463)
T PLN02226         73 --VSSTLQRWVRPFSSESGDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLV  150 (463)
T ss_pred             --hhhhhhhcccccccccCCceEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEe
Confidence              125678899999887666699999999999999999999999999999999999999999               999


Q ss_pred             cCCCeecCCCEEEEEecCCCcccccccccccCCCCCCCCCCCCCCCCCCCcccCccccCCC-CCCCCCCCCCCCCCCCCC
Q 012864          135 KEGETVEPGAKIAVISKSGEGVAQAASAEKAAAQPPPAEEKPSAEKQTPESEAAPAVKDKT-PSEPPPTAKKPTSPPSKP  213 (455)
Q Consensus       135 ~~G~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sPavr~~~-~s~~~~~~~~~~~~~~~~  213 (455)
                      ++||.|++|++|+.|++++++.+...+..+.+..+.+.+..+........+.++|++|+.. ++++.+    +.     .
T Consensus       151 ~eGd~V~vG~~L~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~asp~~r~~~~~~~~~~----~~-----~  221 (463)
T PLN02226        151 KEGDTVEPGTKVAIISKSEDAASQVTPSQKIPETTDPKPSPPAEDKQKPKVESAPVAEKPKAPSSPPP----PK-----Q  221 (463)
T ss_pred             CCCCEecCCCEEEEeccCCccccccCccCCCCCCCCCCCCCccccccccCCCcchhhccccCCCCCCC----Cc-----c
Confidence            9999999999999997544321110000000000000000000001112345667765431 111100    00     0


Q ss_pred             CCCCCCCCCCCCcceeeCchHHHHHHHHHHhcccCccEEEEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHHH
Q 012864          214 MASEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAV  293 (455)
Q Consensus       214 ~~~~~~~~~~~~~~~vpls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a  293 (455)
                      ....+..+....++.+||+++||.||++|++||+++||||++.|+|+|+|+++|+++++.+.+++|+|+||++||+||++
T Consensus       222 ~~~~~~~~~~~~~~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~evDvt~L~~lR~~l~~~~~~~~g~klS~~~~liKAva  301 (463)
T PLN02226        222 SAKEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAV  301 (463)
T ss_pred             cccCcccccCCCceeeeChHHHHHHHHHHHHHHhcCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHH
Confidence            00000100111245689999999999999999999999999999999999999999997766666999999999999999


Q ss_pred             HHhhcCCcccEEEeCCeEEEcCCccEEEEEecCCCeEEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCcEEE
Q 012864          294 SALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTI  373 (455)
Q Consensus       294 ~AL~~~P~lNa~l~~~~i~~~~~vnIgiAV~~~~GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~g~l~~~dl~ggTftI  373 (455)
                      +||++||++|++|+++.|+++++|||||||++++||+||||+|+|++++.||++++++|++++|+|+|+++||+||||||
T Consensus       302 ~AL~~~P~lNa~~~~~~i~~~~~vnIGvAV~t~~GLvVPVIr~ad~~sl~eIa~ei~~L~~kAR~gkL~~~dl~GGTfTI  381 (463)
T PLN02226        302 SALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIEKTINGLAKKANEGTISIDEMAGGSFTV  381 (463)
T ss_pred             HHHHhCCHhheEEcCCEEEEeCcccEEEEEECCCCEEeccCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCCeeeecCCCCeEEEEecceeeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhc
Q 012864          374 SNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL  453 (455)
Q Consensus       374 SNlG~~G~~~~~Pii~~Pq~aIL~vG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~P~~lll  453 (455)
                      ||+|+||+++|+|||||||+||||+|+++++|++.||++++|++|+||||||||+|||++||+||++|+++||||+.||+
T Consensus       382 SNlG~~Gv~~ftPIInpPqvAILgvG~i~~~pvv~~g~i~~r~~m~lsLs~DHRVIDGa~aA~FL~~lk~~LE~P~~LLl  461 (463)
T PLN02226        382 SNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVVGGSVVPRPMMYVALTYDHRLIDGREAVYFLRRVKDVVEDPQRLLL  461 (463)
T ss_pred             ECCCcccccceeccccCCcEEEEEcccceEEEEEECCEEEEEeEEEEeEecchhhhCcHHHHHHHHHHHHHhcCHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cC
Q 012864          454 DI  455 (455)
Q Consensus       454 ~~  455 (455)
                      ++
T Consensus       462 ~~  463 (463)
T PLN02226        462 DI  463 (463)
T ss_pred             cC
Confidence            75

>PRK05704 dihydrolipoamide succinyltransferase; Validated Back     alignment and domain information
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional Back     alignment and domain information
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) Back     alignment and domain information
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex Back     alignment and domain information
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion] Back     alignment and domain information
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase Back     alignment and domain information
>PLN02528 2-oxoisovalerate dehydrogenase E2 component Back     alignment and domain information
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] Back     alignment and domain information
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion] Back     alignment and domain information
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form Back     alignment and domain information
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form Back     alignment and domain information
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated Back     alignment and domain information
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed Back     alignment and domain information
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion] Back     alignment and domain information
>PRK14843 dihydrolipoamide acetyltransferase; Provisional Back     alignment and domain information
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2 Back     alignment and domain information
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>PRK13757 chloramphenicol acetyltransferase; Provisional Back     alignment and domain information
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2 Back     alignment and domain information
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional Back     alignment and domain information
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid Back     alignment and domain information
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms] Back     alignment and domain information
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional Back     alignment and domain information
>PRK06748 hypothetical protein; Validated Back     alignment and domain information
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase Back     alignment and domain information
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated Back     alignment and domain information
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional Back     alignment and domain information
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS) Back     alignment and domain information
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form Back     alignment and domain information
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases Back     alignment and domain information
>PRK07051 hypothetical protein; Validated Back     alignment and domain information
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase Back     alignment and domain information
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism] Back     alignment and domain information
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase Back     alignment and domain information
>PRK14042 pyruvate carboxylase subunit B; Provisional Back     alignment and domain information
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein Back     alignment and domain information
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>TIGR02712 urea_carbox urea carboxylase Back     alignment and domain information
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit Back     alignment and domain information
>TIGR01235 pyruv_carbox pyruvate carboxylase Back     alignment and domain information
>PRK14040 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>PRK09282 pyruvate carboxylase subunit B; Validated Back     alignment and domain information
>PRK12999 pyruvate carboxylase; Reviewed Back     alignment and domain information
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like Back     alignment and domain information
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] Back     alignment and domain information
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional Back     alignment and domain information
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>cd06848 GCS_H Glycine cleavage H-protein Back     alignment and domain information
>PRK06748 hypothetical protein; Validated Back     alignment and domain information
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit Back     alignment and domain information
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism] Back     alignment and domain information
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism] Back     alignment and domain information
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional Back     alignment and domain information
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2 Back     alignment and domain information
>PRK07051 hypothetical protein; Validated Back     alignment and domain information
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed Back     alignment and domain information
>PRK15030 multidrug efflux system transporter AcrA; Provisional Back     alignment and domain information
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family Back     alignment and domain information
>PRK00624 glycine cleavage system protein H; Provisional Back     alignment and domain information
>PRK09859 multidrug efflux system protein MdtE; Provisional Back     alignment and domain information
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C Back     alignment and domain information
>PRK12784 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A) Back     alignment and domain information
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid Back     alignment and domain information
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial Back     alignment and domain information
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional Back     alignment and domain information
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ] Back     alignment and domain information
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion] Back     alignment and domain information
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism] Back     alignment and domain information
>PRK11556 multidrug efflux system subunit MdtA; Provisional Back     alignment and domain information
>PRK13380 glycine cleavage system protein H; Provisional Back     alignment and domain information
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry Back     alignment and domain information
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>PRK03598 putative efflux pump membrane fusion protein; Provisional Back     alignment and domain information
>PRK15136 multidrug efflux system protein EmrA; Provisional Back     alignment and domain information
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 Back     alignment and domain information
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>PRK10476 multidrug resistance protein MdtN; Provisional Back     alignment and domain information
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT Back     alignment and domain information
>PRK11578 macrolide transporter subunit MacA; Provisional Back     alignment and domain information
>PLN02226 2-oxoglutarate dehydrogenase E2 component Back     alignment and domain information
>PRK01202 glycine cleavage system protein H; Provisional Back     alignment and domain information
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase Back     alignment and domain information
>PRK09439 PTS system glucose-specific transporter subunit; Provisional Back     alignment and domain information
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family Back     alignment and domain information
>TIGR00527 gcvH glycine cleavage system H protein Back     alignment and domain information
>PF13437 HlyD_3: HlyD family secretion protein Back     alignment and domain information
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional Back     alignment and domain information
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism] Back     alignment and domain information
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like Back     alignment and domain information
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein Back     alignment and domain information
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein Back     alignment and domain information
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase Back     alignment and domain information
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit Back     alignment and domain information
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component Back     alignment and domain information
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria Back     alignment and domain information
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query455
1c4t_A233 Catalytic Domain From Trimeric Dihydrolipoamide Suc 1e-72
1b5s_A242 Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalyt 4e-35
3duf_I428 Snapshots Of Catalysis In The E1 Subunit Of The Pyr 5e-35
3mae_A256 Crystal Structure Of Probable Dihydrolipamide Acety 2e-33
1dpc_A243 Crystallographic And Enzymatic Investigations On Th 5e-28
3l60_A250 Crystal Structure Of Branched-Chain Alpha-Keto Acid 1e-27
1dpd_A243 Crystallographic And Enzymatic Investigations On Th 4e-27
1eaa_A243 Atomic Structure Of The Cubic Core Of The Pyruvate 8e-27
3rqc_A224 Crystal Structure Of The Catalytic Core Of The 2-Ox 2e-26
1dpb_A243 Crystallographic And Enzymatic Investigations On Th 3e-26
2ihw_A262 Crystal Structure Of A Cubic Core Of The Dihydrolip 1e-23
3b8k_A239 Structure Of The Truncated Human Dihydrolipoyl Acet 2e-19
2xt6_A 1113 Crystal Structure Of Mycobacterium Smegmatis Alpha- 2e-09
1pmr_A80 Lipoyl Domain From The Dihydrolipoyl Succinyltransf 5e-05
1ghj_A79 Solution Structure Of The Lipoyl Domain Of The 2- O 3e-04
>pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide Succinyltransferase Length = 233 Back     alignment and structure 
Iteration: 1

 Score =  270 bits (690), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 131/230 (56%), Positives = 171/230 (74%)
Query: 226 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLM 285
           E+RVPMTRLRKRVA RL +++N+ A+LTTFNEV+M  +M LR  Y +AF ++HG++LG M
Sbjct: 4   EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFM 63
Query: 286 SGFVKAAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEI 345
           S +VKA V AL+  P VNA               S AV T +GLV PV+R+ + +  A+I
Sbjct: 64  SFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADI 123
Query: 346 EKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRP 405
           EK+I  LA K  DG ++++++ GG FTI+NGGV+GSL+STPIINPPQSAILGMH+I +RP
Sbjct: 124 EKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRP 183
Query: 406 MVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 455
           M V G V   PMMY+AL+YDHRLIDGRE+V FL  IK+++EDP RLLLD+
Sbjct: 184 MAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 233
>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic Domain (Residues 184-425) From Bacillus Stearothermophilus Length = 242 Back     alignment and structure
>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 428 Back     alignment and structure
>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide Acetyltransferase From Listeria Monocytogenes 4b F2365 Length = 256 Back     alignment and structure
>pdb|1DPC|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243 Back     alignment and structure
>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis Length = 250 Back     alignment and structure
>pdb|1DPD|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243 Back     alignment and structure
>pdb|1EAA|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate Dehydrogenase Multienzyme Complex Length = 243 Back     alignment and structure
>pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid Dehydrogenase Multienzyme Complex From Thermoplasma Acidophilum Length = 224 Back     alignment and structure
>pdb|1DPB|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243 Back     alignment and structure
>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide Acyltransferase (E2b) Component In The Branched-Chain Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form Length = 262 Back     alignment and structure
>pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl Acetyltransferase (E2) Length = 239 Back     alignment and structure
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic Form) Length = 1113 Back     alignment and structure
>pdb|1PMR|A Chain A, Lipoyl Domain From The Dihydrolipoyl Succinyltransferase Component Of The 2-Oxoglutarate Dehydrogenase Multienzyme Complex Of Escherichia Coli, Nmr, 25 Structures Length = 80 Back     alignment and structure
>pdb|1GHJ|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2- Oxoglutarate Dehydrogenase Complex From Azotobacter Vineland Ii, Nmr, Minimized Average Structure Length = 79 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query455
1scz_A233 E2, dihydrolipoamide succinyltransferase; COA-depe 1e-164
3dva_I428 Dihydrolipoyllysine-residue acetyltransferase comp 1e-157
3mae_A256 2-oxoisovalerate dehydrogenase E2 component, dihyd 1e-148
3rqc_A224 Probable lipoamide acyltransferase; alpha beta fol 1e-130
3l60_A250 Branched-chain alpha-keto acid dehydrogenase; stru 1e-123
1dpb_A243 Dihydrolipoyl-transacetylase; dihydrolipoamide ace 1e-111
2ii3_A262 Lipoamide acyltransferase component of branched-C 1e-106
3b8k_A239 PDCE2;, dihydrolipoyllysine-residue acetyltransfer 1e-90
1q23_A219 Chloramphenicol acetyltransferase; CAT I, trimer, 2e-31
3cla_A213 Type III chloramphenicol acetyltransferase; transf 1e-29
2i9d_A217 Chloramphenicol acetyltransferase; structural geno 1e-22
1zy8_K229 Pyruvate dehydrogenase protein X component, mitoch 1e-20
1ghj_A79 E2, E2, the dihydrolipoamide succinyltransferase c 1e-19
1pmr_A80 Dihydrolipoyl succinyltransferase; 2-oxoglutarate 7e-19
2xt6_A 1113 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET 3e-15
2l5t_A77 Lipoamide acyltransferase; E2 lipoyl domain; NMR { 2e-13
1k8m_A93 E2 component of branched-chain ahpha-ketoacid dehy 3e-13
1y8o_B128 Dihydrolipoyllysine-residue acetyltransferase COM 1e-09
2dne_A108 Dihydrolipoyllysine-residue acetyltransferase comp 2e-08
2dnc_A98 Pyruvate dehydrogenase protein X component; lipoic 4e-08
2kcc_A84 Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, 2e-07
2dn8_A100 Acetyl-COA carboxylase 2; biotin required enzyme, 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
3crk_C87 Dihydrolipoyllysine-residue acetyltransferase COM 3e-06
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 5e-06
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 2e-05
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A Length = 233 Back     alignment and structure
 Score =  462 bits (1191), Expect = e-164
 Identities = 139/231 (60%), Positives = 183/231 (79%)

Query: 225 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGL 284
            E+RVPMTRLRKRVA RL +++N+ A+LTTFNEV+M  +M LR  Y +AF ++HG++LG 
Sbjct: 3   SEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGF 62

Query: 285 MSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAE 344
           MS +VKA V AL+  P VNA IDGDD++Y +Y D+S AV T +GLV PV+R+ + +  A+
Sbjct: 63  MSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMAD 122

Query: 345 IEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNR 404
           IEK+I  LA K  DG ++++++ GG FTI+NGGV+GSL+STPIINPPQSAILGMH+I +R
Sbjct: 123 IEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDR 182

Query: 405 PMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 455
           PM V G V   PMMY+AL+YDHRLIDGRE+V FL  IK+++EDP RLLLD+
Sbjct: 183 PMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 233
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428 Back     alignment and structure
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes} Length = 256 Back     alignment and structure
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728} Length = 224 Back     alignment and structure
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} Length = 250 Back     alignment and structure
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A Length = 243 Back     alignment and structure
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A* Length = 262 Back     alignment and structure
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens} Length = 239 Back     alignment and structure
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A* Length = 219 Back     alignment and structure
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A* Length = 213 Back     alignment and structure
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron} Length = 217 Back     alignment and structure
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Length = 79 Back     alignment and structure
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80 Back     alignment and structure
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Length = 1113 Back     alignment and structure
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Length = 77 Back     alignment and structure
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Length = 93 Back     alignment and structure
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Length = 128 Back     alignment and structure
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Length = 108 Back     alignment and structure
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98 Back     alignment and structure
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Length = 84 Back     alignment and structure
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Length = 87 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query455
3dva_I428 Dihydrolipoyllysine-residue acetyltransferase comp 100.0
1scz_A233 E2, dihydrolipoamide succinyltransferase; COA-depe 100.0
3mae_A256 2-oxoisovalerate dehydrogenase E2 component, dihyd 100.0
3l60_A250 Branched-chain alpha-keto acid dehydrogenase; stru 100.0
1dpb_A243 Dihydrolipoyl-transacetylase; dihydrolipoamide ace 100.0
2ii3_A262 Lipoamide acyltransferase component of branched-C 100.0
3rqc_A224 Probable lipoamide acyltransferase; alpha beta fol 100.0
3b8k_A239 PDCE2;, dihydrolipoyllysine-residue acetyltransfer 100.0
2xt6_A 1113 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET 100.0
1q23_A219 Chloramphenicol acetyltransferase; CAT I, trimer, 100.0
3cla_A213 Type III chloramphenicol acetyltransferase; transf 100.0
2i9d_A217 Chloramphenicol acetyltransferase; structural geno 100.0
1y8o_B128 Dihydrolipoyllysine-residue acetyltransferase COM 99.58
2dne_A108 Dihydrolipoyllysine-residue acetyltransferase comp 99.58
2dnc_A98 Pyruvate dehydrogenase protein X component; lipoic 99.56
3crk_C87 Dihydrolipoyllysine-residue acetyltransferase COM 99.54
1k8m_A93 E2 component of branched-chain ahpha-ketoacid dehy 99.5
1zy8_K229 Pyruvate dehydrogenase protein X component, mitoch 99.48
1ghj_A79 E2, E2, the dihydrolipoamide succinyltransferase c 99.4
1pmr_A80 Dihydrolipoyl succinyltransferase; 2-oxoglutarate 99.39
1qjo_A80 Dihydrolipoamide acetyltransferase; lipoyl domain, 99.35
2l5t_A77 Lipoamide acyltransferase; E2 lipoyl domain; NMR { 99.34
1iyu_A79 E2P, dihydrolipoamide acetyltransferase component 99.24
1gjx_A81 Pyruvate dehydrogenase; oxidoreductase, lipoyl dom 99.21
2k7v_A85 Dihydrolipoyllysine-residue acetyltransferase comp 99.0
2jku_A94 Propionyl-COA carboxylase alpha chain, mitochondri 98.69
1z6h_A72 Biotin/lipoyl attachment protein; solution structu 98.67
2kcc_A84 Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, 98.63
2dn8_A100 Acetyl-COA carboxylase 2; biotin required enzyme, 98.57
2d5d_A74 Methylmalonyl-COA decarboxylase gamma chain; bioti 98.52
1dcz_A77 Transcarboxylase 1.3S subunit; antiparallel beta s 98.41
2ejm_A99 Methylcrotonoyl-COA carboxylase subunit alpha; bio 98.4
1bdo_A80 Acetyl-COA carboxylase; BCCPSC, carboxyl transfera 98.39
3n6r_A681 Propionyl-COA carboxylase, alpha subunit; protein 98.3
3u9t_A675 MCC alpha, methylcrotonyl-COA carboxylase, alpha-s 98.26
3va7_A1236 KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A 98.22
3hbl_A1150 Pyruvate carboxylase; TIM barrel, ligase; HET: BTI 98.21
3bg3_A718 Pyruvate carboxylase, mitochondrial; TIM barrel, A 97.81
2qf7_A1165 Pyruvate carboxylase protein; multi-domain, multi- 97.7
2k32_A116 A; NMR {Campylobacter jejuni} PDB: 2k33_A* 97.69
1zko_A136 Glycine cleavage system H protein; TM0212, structu 96.74
2f1m_A277 Acriflavine resistance protein A; helical hairpin, 95.67
1hpc_A131 H protein of the glycine cleavage system; transit 95.37
3a7l_A128 H-protein, glycine cleavage system H protein; lipo 95.37
1onl_A128 Glycine cleavage system H protein; hybrid barrel-s 95.33
3ne5_B413 Cation efflux system protein CUSB; transmembrane h 94.98
3fpp_A341 Macrolide-specific efflux protein MACA; hexameric 94.18
1vf7_A369 Multidrug resistance protein MEXA; alpha hairpin, 94.12
3lnn_A359 Membrane fusion protein (MFP) heavy metal cation Z 94.07
2l5t_A77 Lipoamide acyltransferase; E2 lipoyl domain; NMR { 92.43
1ghj_A79 E2, E2, the dihydrolipoamide succinyltransferase c 91.01
1z6h_A72 Biotin/lipoyl attachment protein; solution structu 90.69
1qjo_A80 Dihydrolipoamide acetyltransferase; lipoyl domain, 90.64
3crk_C87 Dihydrolipoyllysine-residue acetyltransferase COM 90.01
1bdo_A80 Acetyl-COA carboxylase; BCCPSC, carboxyl transfera 89.84
1k8m_A93 E2 component of branched-chain ahpha-ketoacid dehy 89.77
1iyu_A79 E2P, dihydrolipoamide acetyltransferase component 89.45
2xha_A193 NUSG, transcription antitermination protein NUSG; 89.43
2gpr_A154 Glucose-permease IIA component; phosphotransferase 89.42
3klr_A125 Glycine cleavage system H protein; antiparallel be 88.67
3our_B183 EIIA, phosphotransferase system IIA component; exh 88.3
3mxu_A143 Glycine cleavage system H protein; seattle structu 87.91
1dcz_A77 Transcarboxylase 1.3S subunit; antiparallel beta s 87.09
2dnc_A98 Pyruvate dehydrogenase protein X component; lipoic 86.72
1y8o_B128 Dihydrolipoyllysine-residue acetyltransferase COM 86.65
2d5d_A74 Methylmalonyl-COA decarboxylase gamma chain; bioti 86.45
4dk0_A369 Putative MACA; alpha-hairpin, lipoyl, beta-barrel, 85.94
2k7v_A85 Dihydrolipoyllysine-residue acetyltransferase comp 85.62
3tzu_A137 GCVH, glycine cleavage system H protein 1; ssgcid, 85.45
3hgb_A155 Glycine cleavage system H protein; ssgcid, niaid, 85.06
2dne_A108 Dihydrolipoyllysine-residue acetyltransferase comp 84.75
3na6_A331 Succinylglutamate desuccinylase/aspartoacylase; st 84.1
3cdx_A354 Succinylglutamatedesuccinylase/aspartoacylase; str 83.36
2auk_A190 DNA-directed RNA polymerase beta' chain; sandwich- 83.36
1ax3_A162 Iiaglc, glucose permease IIA domain; phosphotransf 83.21
2xhc_A352 Transcription antitermination protein NUSG; 2.45A 83.15
2kcc_A84 Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, 82.1
3fmc_A368 Putative succinylglutamate desuccinylase / aspart; 82.05
2jku_A94 Propionyl-COA carboxylase alpha chain, mitochondri 81.28
1pmr_A80 Dihydrolipoyl succinyltransferase; 2-oxoglutarate 80.14
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Back     alignment and structure
Probab=100.00  E-value=2.4e-83  Score=669.31  Aligned_cols=366  Identities=31%  Similarity=0.518  Sum_probs=15.0

Q ss_pred             ceEEEEccCCCCCCceEEEEEEeecCCCeeecCCcEEEEEccc---------------eeccCCCeecCCCEEEEEecCC
Q 012864           89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDK---------------LIAKEGETVEPGAKIAVISKSG  153 (455)
Q Consensus        89 ~~~~i~~P~lg~~~~e~~i~~w~v~~Gd~V~~gd~l~evetdK---------------i~~~~G~~v~vG~~l~~i~~~~  153 (455)
                      |.++|+||+||++|+||+|++|+|++||.|++||+||+|||||               |++++||.|++|++|+.|++++
T Consensus         1 M~~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~~   80 (428)
T 3dva_I            1 MAFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPG   80 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence            4678999999999999999999999999999999999999999               8999999999999999998765


Q ss_pred             Ccccccc--c--cc---ccC-CCCCCCC---CCCC-----C-CCCCCCcccCccccCC-----------CCCCCCCCCCC
Q 012864          154 EGVAQAA--S--AE---KAA-AQPPPAE---EKPS-----A-EKQTPESEAAPAVKDK-----------TPSEPPPTAKK  205 (455)
Q Consensus       154 ~~~~~~~--~--~~---~~~-~~~~~~~---~~~~-----~-~~~~~~~~~sPavr~~-----------~~s~~~~~~~~  205 (455)
                      ++.....  +  ..   ..+ ..+++.+   +.+.     . ......+.++|++|++           .++|+.++..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~R~lA~e~gvdl~~v~gtG~~GrI~k  160 (428)
T 3dva_I           81 YENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLK  160 (428)
T ss_dssp             -----------------------------------------------CCCCCHHHHHHHHHTTCCGGGSCCCSTTSCCCT
T ss_pred             ccccccccccccccccCCCcccCCccccccCCCccccccccccccccccccCHHHHHHHHHcCCCHHHCCCCCCCCceeH
Confidence            5322110  0  00   000 0000000   0000     0 0011235688999863           56777765432


Q ss_pred             CCC---------CCCCCC----CCCCCC----CCCCCcceeeCchHHHHHHHHHHhcccCccEEEEEeeeechHHHHHHH
Q 012864          206 PTS---------PPSKPM----ASEPQL----PPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRS  268 (455)
Q Consensus       206 ~~~---------~~~~~~----~~~~~~----~~~~~~~~vpls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~  268 (455)
                      ...         .++.+.    ...+..    .....++++||+++||.||++|++||+++||||++.+||+|+|+++|+
T Consensus       161 ~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~rk  240 (428)
T 3dva_I          161 EDIDAFLAGGAKPAPAAAEEKAAPAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRK  240 (428)
T ss_dssp             TTTTTTSCC-----------------------------------------------------------------------
T ss_pred             HHHHHHhhccccccccccccccccCCCCccccccCCccccccCcHHHHHHHHHHHHhcccCCeEEEEEEEeHHHHHHHHH
Confidence            211         000000    000000    011235789999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccEEEeC--CeEEEcCCccEEEEEecCCCeEEEEEccCCCCCHHHHH
Q 012864          269 DYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG--DDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIE  346 (455)
Q Consensus       269 ~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa~l~~--~~i~~~~~vnIgiAV~~~~GL~vPvI~~a~~~sl~eIa  346 (455)
                      ++++.+ ++.|.|+||++||+||+++||++||+||++|++  ++|+++++||||+||++++||++|||+|+++++|.+|+
T Consensus       241 ~~~~~~-~~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~eia  319 (428)
T 3dva_I          241 KFKAIA-AEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALA  319 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HhhhhH-hhcCCCcCHHHHHHHHHHHHHHhCHHhhheEecCCCeEEEcCccCeEEEEEcCCceEEeeeccCCCCCHHHHH
Confidence            998653 457999999999999999999999999999988  78999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCccccCCCcEEEecCCCCCCCCeeeecCCCCeEEEEecceeeEEEEeCCeEeEEcEEEEEEEecc
Q 012864          347 KEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDH  426 (455)
Q Consensus       347 ~el~~l~~~a~~g~l~~~dl~ggTftISNlG~~G~~~~~Pii~~Pq~aIL~vG~i~~~pvv~~g~i~~r~~m~lslt~DH  426 (455)
                      ++++++++++|+|+|.++|++||||||||+||+|+++|+||||+||+|||++|+++++|++.||++++|++|+|||+|||
T Consensus       320 ~~~~~l~~~ar~gkL~~~e~~ggtftISnlG~~G~~~ftpIin~pq~aIl~vG~i~~~pv~~~g~i~~r~~m~lsls~DH  399 (428)
T 3dva_I          320 QEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDH  399 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccceEeecCCCCceEEEccccEEEEEEECCEEEEeeeEEEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccChHHHHHHHHHHHHHhcChhhhhccC
Q 012864          427 RLIDGREAVFFLRRIKDIVEDPRRLLLDI  455 (455)
Q Consensus       427 RviDGa~aa~Fl~~lk~~LE~P~~lll~~  455 (455)
                      |+|||+++++||++|+++||||+.|||++
T Consensus       400 RviDG~~aa~Fl~~lk~~Le~P~~lll~~  428 (428)
T 3dva_I          400 RMIDGATAQKALNHIKRLLSDPELLLMEA  428 (428)
T ss_dssp             -----------------------------
T ss_pred             cccchHHHHHHHHHHHHHHhCHHHHhhcC
Confidence            99999999999999999999999999874
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A Back     alignment and structure
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes} Back     alignment and structure
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0 Back     alignment and structure
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A Back     alignment and structure
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A* Back     alignment and structure
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728} Back     alignment and structure
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens} Back     alignment and structure
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Back     alignment and structure
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A* Back     alignment and structure
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A* Back     alignment and structure
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Back     alignment and structure
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Back     alignment and structure
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Back     alignment and structure
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Back     alignment and structure
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Back     alignment and structure
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Back     alignment and structure
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Back     alignment and structure
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Back     alignment and structure
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Back     alignment and structure
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Back     alignment and structure
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Back     alignment and structure
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens} Back     alignment and structure
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Back     alignment and structure
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Back     alignment and structure
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A Back     alignment and structure
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Back     alignment and structure
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A Back     alignment and structure
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Back     alignment and structure
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Back     alignment and structure
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* Back     alignment and structure
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Back     alignment and structure
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Back     alignment and structure
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A* Back     alignment and structure
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A Back     alignment and structure
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli} Back     alignment and structure
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A* Back     alignment and structure
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E* Back     alignment and structure
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1 Back     alignment and structure
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B Back     alignment and structure
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli} Back     alignment and structure
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A Back     alignment and structure
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans} Back     alignment and structure
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Back     alignment and structure
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Back     alignment and structure
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Back     alignment and structure
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Back     alignment and structure
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Back     alignment and structure
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A Back     alignment and structure
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Back     alignment and structure
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Back     alignment and structure
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima} Back     alignment and structure
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1 Back     alignment and structure
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A Back     alignment and structure
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1 Back     alignment and structure
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae} Back     alignment and structure
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Back     alignment and structure
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Back     alignment and structure
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A Back     alignment and structure
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A Back     alignment and structure
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Back     alignment and structure
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum} Back     alignment and structure
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A Back     alignment and structure
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Back     alignment and structure
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP} Back     alignment and structure
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2} Back     alignment and structure
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli} Back     alignment and structure
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A Back     alignment and structure
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima} Back     alignment and structure
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Back     alignment and structure
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A* Back     alignment and structure
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens} Back     alignment and structure
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 455
d1scza_233 c.43.1.1 (A:) Dihydrolipoamide succinyltransferase 2e-87
d1b5sa_242 c.43.1.1 (A:) Dihydrolipoamide acetyltransferase { 2e-66
d3claa_213 c.43.1.1 (A:) Chloramphenicol acetyltransferase, C 8e-59
d1dpba_243 c.43.1.1 (A:) Dihydrolipoamide acetyltransferase { 9e-56
d1q23a_214 c.43.1.1 (A:) Chloramphenicol acetyltransferase, C 2e-52
d1y8ob1102 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoa 8e-14
d1k8ma_87 b.84.1.1 (A:) Lipoyl domain of the mitochondrial b 2e-13
d1pmra_80 b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate 4e-13
d1ghja_79 b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate 5e-13
d1laba_80 b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac 1e-11
d1gjxa_81 b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac 5e-11
d1qjoa_80 b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac 5e-10
d1iyua_79 b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac 1e-08
d1dcza_77 b.84.1.1 (A:) Biotin carboxyl carrier domain of tr 2e-05
>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 233 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

 Score =  264 bits (677), Expect = 2e-87
 Identities = 139/230 (60%), Positives = 183/230 (79%)

Query: 226 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLM 285
           E+RVPMTRLRKRVA RL +++N+ A+LTTFNEV+M  +M LR  Y +AF ++HG++LG M
Sbjct: 4   EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFM 63

Query: 286 SGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEI 345
           S +VKA V AL+  P VNA IDGDD++Y +Y D+S AV T +GLV PV+R+ + +  A+I
Sbjct: 64  SFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADI 123

Query: 346 EKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRP 405
           EK+I  LA K  DG ++++++ GG FTI+NGGV+GSL+STPIINPPQSAILGMH+I +RP
Sbjct: 124 EKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRP 183

Query: 406 MVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 455
           M V G V   PMMY+AL+YDHRLIDGRE+V FL  IK+++EDP RLLLD+
Sbjct: 184 MAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 233
>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 242 Back     information, alignment and structure
>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 213 Back     information, alignment and structure
>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 243 Back     information, alignment and structure
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 214 Back     information, alignment and structure
>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 87 Back     information, alignment and structure
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Length = 80 Back     information, alignment and structure
>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Length = 79 Back     information, alignment and structure
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 80 Back     information, alignment and structure
>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Length = 81 Back     information, alignment and structure
>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Length = 80 Back     information, alignment and structure
>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 79 Back     information, alignment and structure
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Length = 77 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query455
d1scza_233 Dihydrolipoamide succinyltransferase {Escherichia 100.0
d1dpba_243 Dihydrolipoamide acetyltransferase {Azotobacter vi 100.0
d1b5sa_242 Dihydrolipoamide acetyltransferase {Bacillus stear 100.0
d1q23a_214 Chloramphenicol acetyltransferase, CAT {Escherichi 100.0
d3claa_213 Chloramphenicol acetyltransferase, CAT {Escherichi 100.0
d1y8ob1102 Lipoyl domain of dihydrolipoamide acetyltransferas 99.8
d1k8ma_87 Lipoyl domain of the mitochondrial branched-chain 99.75
d1ghja_79 Lipoyl domain of the 2-oxoglutarate dehydrogenase 99.74
d1laba_80 Lipoyl domain of dihydrolipoamide acetyltransferas 99.72
d1pmra_80 Lipoyl domain of the 2-oxoglutarate dehydrogenase 99.71
d1gjxa_81 Lipoyl domain of dihydrolipoamide acetyltransferas 99.67
d1qjoa_80 Lipoyl domain of dihydrolipoamide acetyltransferas 99.65
d1iyua_79 Lipoyl domain of dihydrolipoamide acetyltransferas 99.55
d1dcza_77 Biotin carboxyl carrier domain of transcarboxylase 99.02
d1bdoa_80 Biotinyl domain of acetyl-CoA carboxylase {Escheri 98.62
d1iyua_79 Lipoyl domain of dihydrolipoamide acetyltransferas 95.61
d1k8ma_87 Lipoyl domain of the mitochondrial branched-chain 95.49
d1bdoa_80 Biotinyl domain of acetyl-CoA carboxylase {Escheri 95.47
d1qjoa_80 Lipoyl domain of dihydrolipoamide acetyltransferas 95.37
d2gpra_154 Glucose permease IIa domain, IIa-glc {Mycoplasma c 94.55
d1vf7a_237 Multidrug resistance protein MexA domain {Pseudomo 93.94
d1laba_80 Lipoyl domain of dihydrolipoamide acetyltransferas 93.65
d1ghja_79 Lipoyl domain of the 2-oxoglutarate dehydrogenase 93.56
d1gjxa_81 Lipoyl domain of dihydrolipoamide acetyltransferas 93.25
d1dcza_77 Biotin carboxyl carrier domain of transcarboxylase 93.18
d1gpra_158 Glucose permease IIa domain, IIa-glc {Bacillus sub 91.9
d2f3ga_150 Glucose-specific factor III (glsIII) {Escherichia 90.98
d1pmra_80 Lipoyl domain of the 2-oxoglutarate dehydrogenase 89.55
d1brwa3103 Pyrimidine nucleoside phosphorylase {Bacillus stea 87.95
d1qpoa2115 Quinolinic acid phosphoribosyltransferase (Nicotin 87.28
d1y8ob1102 Lipoyl domain of dihydrolipoamide acetyltransferas 87.23
d2tpta3105 Thymidine phosphorylase {Escherichia coli [TaxId: 85.85
d1qapa2122 Quinolinic acid phosphoribosyltransferase (Nicotin 84.96
d1uoua3105 Thymidine phosphorylase {Human (Homo sapiens) [Tax 84.75
d1o4ua2103 Quinolinic acid phosphoribosyltransferase (Nicotin 84.56
>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.4e-70  Score=522.72  Aligned_cols=231  Identities=60%  Similarity=1.020  Sum_probs=226.7

Q ss_pred             CcceeeCchHHHHHHHHHHhcccCccEEEEEeeeechHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHhhcCCcccE
Q 012864          225 RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNA  304 (455)
Q Consensus       225 ~~~~vpls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~~~~~~~~~g~kls~~~~~ikA~a~AL~~~P~lNa  304 (455)
                      .++++|++++||+||++|++||+++||||++.|||+|+|+++|+++++.+.++.|.|+|+++|++||+++||++||++|+
T Consensus         3 ~ee~vpls~~rk~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~~~~~~~~~~~~klt~~~~likA~a~aL~~~P~~Na   82 (233)
T d1scza_           3 SEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNA   82 (233)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTC
T ss_pred             CCcccCCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHHhhHhhcCCccCHHHHHHHHHHHHHHhCchhhe
Confidence            45789999999999999999999999999999999999999999999887778899999999999999999999999999


Q ss_pred             EEeCCeEEEcCCccEEEEEecCCCeEEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCcEEEecCCCCCCCCe
Q 012864          305 VIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLS  384 (455)
Q Consensus       305 ~l~~~~i~~~~~vnIgiAV~~~~GL~vPvI~~a~~~sl~eIa~el~~l~~~a~~g~l~~~dl~ggTftISNlG~~G~~~~  384 (455)
                      +|+++++++++++|||+||++++||++|||+|++++|+.||++++++|++++++|+|+++|++||||||||+|++|+++|
T Consensus        83 ~~~~~~i~~~~~vnIgiAv~~~~GL~vPvI~~a~~~sl~eia~~~~~l~~~ar~~~L~~~d~~ggTfTISNlG~~g~~~~  162 (233)
T d1scza_          83 SIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMS  162 (233)
T ss_dssp             EEETTEEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCCC
T ss_pred             EEcCCeEEEeccceEEEEEEcCCCeEEeEeeccccCCHHHHHHHHHHHHHHhhcCCCCHHHhCCCcEEEEcCccccceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCCCeEEEEecceeeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhcChhhhhccC
Q 012864          385 TPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI  455 (455)
Q Consensus       385 ~Pii~~Pq~aIL~vG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~P~~lll~~  455 (455)
                      +|||||||+||||+|+++++|++.+|+++++++|+||||||||++||++||+||++|+++||||+.||+||
T Consensus       163 tpii~ppq~aIl~vG~i~~~pv~~~g~i~~r~~~~lsls~DHRviDGa~aa~Fl~~l~~~lE~P~~lll~~  233 (233)
T d1scza_         163 TPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV  233 (233)
T ss_dssp             CCCCCTTCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHCTTHHHHTC
T ss_pred             eeecCCCCceEEecccceeeccccCCeEEEEEEeEEEEEhhcchhccHHHHHHHHHHHHHHhCHHHHhhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999986
>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Back     information, alignment and structure
>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]} Back     information, alignment and structure
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Back     information, alignment and structure
>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1qpoa2 d.41.2.1 (A:2-116) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2tpta3 d.41.3.1 (A:336-440) Thymidine phosphorylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qapa2 d.41.2.1 (A:8-129) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1uoua3 d.41.3.1 (A:374-480) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o4ua2 d.41.2.1 (A:1-103) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure