Citrus Sinensis ID: 012889

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450----
MMNQIQGFEGNHEIFNLTTGMEMIGFSKNLQQHTSDNNSVMWKEFFNNKPAGNNPGPSSSKTINESTTSDHHFYQHDHQFNKQDFTTGMSETSGENLIVGHDHSDVAGAWQENNSRLLVDDSSLRCVFPCEGNERPSQGLSLSLSSSNPSSIGLQSFELRQTNHNDHDHQQDDMRFISSSTSREGFFGKPAAGIQQQQQMMQDGFLGKPAIPPNIHHQTGHQFQLRNSKYLAPAQEILKEFCSLGTKQNDATKLKSNKAKQQWDDENAGSSSRKQSLCSLEFMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQIQATKKAMGEKDPVAPGTSRGETPRLKIIDQTLRQQRAFQQMSMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYVF
ccccccccccccccccccccccHHcccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHcccccEEEc
cccHcccccccHcHHccccccHHccccccccccccccccEEEEHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccEcccccccEEEEcccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccccccEEEc
mmnqiqgfegnheifnlTTGMEMIGFSknlqqhtsdnnSVMWKEFfnnkpagnnpgpsssktinesttsdhhfyqhdhqfnkqdfttgmsetsgenlivghdhsdvagawqennsrllvddsslrcvfpcegnerpsqglslslsssnpssiglqsfelrqtnhndhdhqqddmrfissstsregffgkpaagiQQQQQMMQdgflgkpaippnihhqtghqfqlrnskylAPAQEILKEFCslgtkqndatklksnkakqqwddenagsssrkqslCSLEFMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQIQATKKamgekdpvapgtsrgetprlkIIDQTLRQQRAFQQMSmmeshpwrpqrglperSVSVLRAWLFEhflhpypsdvdkhILARQtglsrsqvcptiyvf
mmnqiqgfegNHEIFNLTTGMEMIGFSKNLQQHTSDNNSVMWKEFFNNkpagnnpgpSSSKTINESTTSDHHFYQHDHQFNKQDFTTGMSETSGENLIVGHDHSDVAGAWQENNSRLLVDDSSLRCVFPCEGNERPSQGLSLSLSSSNPSSIGLQSFELRQTNHNDHDHQQDDMRFISSSTSREGFFGKPAAGIQQQQQMMQDGFLGKPAIPPNIHHQTGHQFQLRNSKYLAPAQEILKEFCSlgtkqndatklksnkakqqwddenagsssrkqslcsLEFMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQIQAtkkamgekdpvapgtsrgetprlkIIDQTLRQQRAFQQMSMMeshpwrpqrglPERSVSVLRAWLFEHFLHPYPSDVDKHILARQtglsrsqvcptiyvf
MMNQIQGFEGNHEIFNLTTGMEMIGFSKNLQQHTSDNNSVMWKEFFNNKPAGNNPGPSSSKTINESTTSDHHFYQHDHQFNKQDFTTGMSETSGENLIVGHDHSDVAGAWQENNSRLLVDDSSLRCVFPCEGNERpsqglslslsssnpssiglqsFELRQTnhndhdhqqddMRFISSSTSREGFFGKPAAGIqqqqqmmqDGFLGKPAIPPNIHHQTGHQFQLRNSKYLAPAQEILKEFCSLGTKQNDATKLKSNKAKQQWDDENAGSSSRKQSLCSLEFMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQIQATKKAMGEKDPVAPGTSRGETPRLKIIDQTLRQQRAFQQMSMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYVF
**********NHEIFNLTTGMEMIGFS*************MWK*****************************************************LIVGHDHSDVAGAWQENNSRLLVDDSSLRCVFPC*****************************************************************************************GHQFQLRNSKYLAPAQEILKEFCSL***********************************LEFMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQIQ**********************************************************VSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV*
*******FEGNHEIFNLTTGMEM*********************************************************************************************************************************************************************************************************LRNSKYLAPAQEILKEFCS*******************************************KRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFE**************ASKAMSRHFRCLRDGIVGQ************************************************************VSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYVF
MMNQIQGFEGNHEIFNLTTGMEMIGFSKNLQQHTSDNNSVMWKEFFNNKPAGN***********ESTTSDHHFYQHDHQFNKQDFTTGMSETSGENLIVGHDHSDVAGAWQENNSRLLVDDSSLRCVFPCEGN******************IGLQSFELRQTNHNDHDHQQDDMRFISSSTSREGFFGKPAAGIQQQQQMMQDGFLGKPAIPPNIHHQTGHQFQLRNSKYLAPAQEILKEFCSLGTKQN*************************QSLCSLEFMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQI*******************GETPRLKIIDQTLRQQRAFQQMSMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYVF
*MNQIQGFEGNHEIFNLTTGMEMIGFSKNLQQHTSDNNSVMWKEFFNNK****************STTSDHHFYQHDH*FNKQDFTTGMSETSGENLIVGHDHSDVAGAWQENNSRLLVDDSSLRCVFPCEGNERPSQGLSLSLSSSNPSSIGLQSFELR*****************************************************N*HHQTGHQFQLRNSKYLAPAQEILKEFCSLG**********************************LEFMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQIQATKKAMG**************PRLKIIDQTLRQQRAFQQMSMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIY**
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MMNQIQGFEGNHEIFNLTTGMEMIGFSKNLQQHTSDNNSVMWKEFFNNKPAGNNPGPSSSKTINESTTSDHHFYQHDHQFNKQDFTTGMSETSGENLIVGHDHSDVAGAWQENNSRLLVDDSSLRCVFPCEGNERPSQGLSLSLSSSNPSSIGLQSFELRQTNHNDHDHQQDDMRFISSSTSREGFFGKPAAGIQQQQQMMQDGFLGKPAIPPNIHHQTGHQFQLRNSKYLAPAQEILKEFCSLGTKQNDATKLKSNKAKQQWDDENAGSSSRKQSLCSLEFMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQIQATKKAMGEKDPVAPGTSRGETPRLKIIDQTLRQQRAFQQMSMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYVF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query454 2.2.26 [Sep-21-2011]
Q38897 611 Homeobox protein BEL1 hom yes no 0.788 0.585 0.485 4e-82
Q9SW80 739 BEL1-like homeodomain pro no no 0.511 0.313 0.521 2e-70
Q94KL5 627 BEL1-like homeodomain pro no no 0.502 0.363 0.548 5e-70
Q9SJ56 680 BEL1-like homeodomain pro no no 0.486 0.325 0.493 2e-57
O65685 532 BEL1-like homeodomain pro no no 0.477 0.407 0.524 1e-56
Q9SIW1 482 BEL1-like homeodomain pro no no 0.491 0.462 0.5 1e-56
Q9FXG8 538 BEL1-like homeodomain pro no no 0.475 0.401 0.478 4e-54
Q9FWS9 524 BEL1-like homeodomain pro no no 0.480 0.416 0.480 4e-53
Q8S897 431 BEL1-like homeodomain pro no no 0.420 0.443 0.402 9e-39
Q9LZM8 575 BEL1-like homeodomain pro no no 0.488 0.386 0.407 1e-38
>sp|Q38897|BEL1_ARATH Homeobox protein BEL1 homolog OS=Arabidopsis thaliana GN=BEL1 PE=1 SV=2 Back     alignment and function desciption
 Score =  305 bits (782), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 206/424 (48%), Positives = 265/424 (62%), Gaps = 66/424 (15%)

Query: 69  SDHHFYQHDHQFNKQDFTTGM----SETSGENLIVGHDHS----DVAGAWQENNSRLLVD 120
           +DHH Y  +HQ    +   GM    S+     +  G DH       +G   +N  +LL D
Sbjct: 36  TDHHHY--NHQIFGSNSNMGMMIDFSKQQQIRMTSGSDHHHHHHQTSGGTDQN--QLLED 91

Query: 121 DSS-LRCV-----FPCEGNE-----RPSQGLSLSLSSSNPSSIGLQSFELRQTNHNDHDH 169
            SS +R       FP E N+     RPSQGLSLSLSSSNP+SI LQSFELR         
Sbjct: 92  SSSAMRLCNVNNDFPSEVNDERPPQRPSQGLSLSLSSSNPTSISLQSFELR--------- 142

Query: 170 QQDDMRFISSSTSREGFFGKPAAGIQQ----QQQMMQDGFLGKPAIPPNIHHQTGHQFQL 225
                        ++G+ G  +   Q     Q  MM      +     N  H   HQFQ+
Sbjct: 143 --------PQQQQQQGYSGNKSTQHQNLQHTQMMMMMMNSHHQNNNNNNHQHHNHHQFQI 194

Query: 226 RNSKYLAPAQEILKEFCSLGTKQND-------ATKLKSNKAKQQWD----------DENA 268
            +SKYL+PAQE+L EFCSLG K++D         K +  K +++WD          D++A
Sbjct: 195 GSSKYLSPAQELLSEFCSLGVKESDEEVMMMKHKKKQKGKQQEEWDTSHHSNNDQHDQSA 254

Query: 269 GSSSRKQ--SLCSLEFMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAA 326
            +SS+K    L SLEFMELQKRK KLLSMLEE+ RRY HY +QM+   ++FEA  G G A
Sbjct: 255 TTSSKKHVPPLHSLEFMELQKRKAKLLSMLEELKRRYGHYREQMRVAAAAFEAAVGLGGA 314

Query: 327 RVYSALASKAMSRHFRCLRDGIVGQIQATKKAMGEKDP---VAPGTSRGETPRLKIIDQT 383
            +Y+ALAS+AMSRHFRCL+DG+VGQIQAT +A+GE++         +RGETPRL+++DQ 
Sbjct: 315 EIYTALASRAMSRHFRCLKDGLVGQIQATSQALGEREEDNRAVSIAARGETPRLRLLDQA 374

Query: 384 LRQQRAFQQMSMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLS 443
           LRQQ++++QM+++++HPWRPQRGLPER+V+ LRAWLFEHFLHPYPSDVDKHILARQTGLS
Sbjct: 375 LRQQKSYRQMTLVDAHPWRPQRGLPERAVTTLRAWLFEHFLHPYPSDVDKHILARQTGLS 434

Query: 444 RSQV 447
           RSQV
Sbjct: 435 RSQV 438
Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SW80|BLH2_ARATH BEL1-like homeodomain protein 2 OS=Arabidopsis thaliana GN=BLH2 PE=1 SV=3 Back     alignment and function description
>sp|Q94KL5|BLH4_ARATH BEL1-like homeodomain protein 4 OS=Arabidopsis thaliana GN=BLH4 PE=2 SV=2 Back     alignment and function description
>sp|Q9SJ56|BLH1_ARATH BEL1-like homeodomain protein 1 OS=Arabidopsis thaliana GN=BLH1 PE=1 SV=1 Back     alignment and function description
>sp|O65685|BLH6_ARATH BEL1-like homeodomain protein 6 OS=Arabidopsis thaliana GN=BLH6 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIW1|BLH7_ARATH BEL1-like homeodomain protein 7 OS=Arabidopsis thaliana GN=BLH7 PE=2 SV=1 Back     alignment and function description
>sp|Q9FXG8|BLH10_ARATH BEL1-like homeodomain protein 10 OS=Arabidopsis thaliana GN=BLH10 PE=1 SV=1 Back     alignment and function description
>sp|Q9FWS9|BLH3_ARATH BEL1-like homeodomain protein 3 OS=Arabidopsis thaliana GN=BLH3 PE=1 SV=1 Back     alignment and function description
>sp|Q8S897|BLH5_ARATH BEL1-like homeodomain protein 5 OS=Arabidopsis thaliana GN=BLH5 PE=2 SV=2 Back     alignment and function description
>sp|Q9LZM8|BLH9_ARATH BEL1-like homeodomain protein 9 OS=Arabidopsis thaliana GN=BLH9 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query454
255537553 698 bel1 homeotic protein, putative [Ricinus 0.942 0.613 0.767 1e-172
359474075 672 PREDICTED: homeobox protein BEL1 homolog 0.927 0.626 0.757 1e-171
356528643 646 PREDICTED: homeobox protein BEL1 homolog 0.938 0.659 0.693 1e-162
356513359 635 PREDICTED: homeobox protein BEL1 homolog 0.942 0.674 0.676 1e-155
356539654 642 PREDICTED: homeobox protein BEL1 homolog 0.911 0.644 0.674 1e-154
356497253 646 PREDICTED: homeobox protein BEL1 homolog 0.911 0.640 0.665 1e-152
224058451535 predicted protein [Populus trichocarpa] 0.704 0.598 0.760 1e-141
297742224445 unnamed protein product [Vitis vinifera] 0.643 0.656 0.765 1e-126
365222892 624 Hop-interacting protein THI035 [Solanum 0.830 0.604 0.575 1e-124
22652121532 BEL1-related homeotic protein 14 [Solanu 0.731 0.624 0.618 1e-118
>gi|255537553|ref|XP_002509843.1| bel1 homeotic protein, putative [Ricinus communis] gi|223549742|gb|EEF51230.1| bel1 homeotic protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 354/461 (76%), Positives = 385/461 (83%), Gaps = 33/461 (7%)

Query: 3   NQIQGFEGNHEIFNLTTGMEMIGFSKNLQQ------HTSDNNSV-MWKEFFNNKPAGNN- 54
           NQIQGFE N EIFNLTTGMEMIGFS+NLQQ      H S+  +  MWK F N   AGNN 
Sbjct: 41  NQIQGFESNQEIFNLTTGMEMIGFSRNLQQQQQQQSHDSNTTAAAMWKGFLNK--AGNNN 98

Query: 55  ---PGPSSSKTINESTTSDHHFYQHDHQFNKQDFTTGMSETSGENLIVGHDHSDVAGAWQ 111
               GPSSSKTINEST+    FYQH+  FNKQ+FTTG+SETS ENLIVG   S   G WQ
Sbjct: 99  NSCAGPSSSKTINESTSD---FYQHE--FNKQEFTTGISETSSENLIVGPTDSSSPG-WQ 152

Query: 112 ENNSRLLVDDSSLRCVFPCEGNERPSQGLSLSLSSSNPSSIGLQSFELRQT-NHNDHDHQ 170
            +  RLLVDDS+LRCVFPCEGNERPSQGLSLSLSS+NPSSIGLQSFELR T NH+DH+ Q
Sbjct: 153 VH--RLLVDDSNLRCVFPCEGNERPSQGLSLSLSSANPSSIGLQSFELRHTSNHHDHNQQ 210

Query: 171 QD-DMRFISSSTSREGFFGKPAAGIQQQQQMMQDGFLGKPAIPPNIHHQTGHQFQLRNSK 229
           Q+ +MRF++SS SR+GFFGK  A  Q QQQMMQDGF+ K A    +HHQ   QFQLRNSK
Sbjct: 211 QEQEMRFLNSS-SRDGFFGKSPANTQHQQQMMQDGFMTKAAT---LHHQG--QFQLRNSK 264

Query: 230 YLAPAQEILKEFCSLGTKQNDATKLKSNKAKQQWDDENAGSSS---RKQSLCSLEFMELQ 286
           YL PAQE+L EFCSLGTKQ+D  + KS+K KQ W++EN  SSS   RKQSLCSLEFMELQ
Sbjct: 265 YLGPAQELLNEFCSLGTKQSDQLRQKSSKPKQ-WENENGSSSSSASRKQSLCSLEFMELQ 323

Query: 287 KRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRD 346
           KRKTKLLSMLEEV+RRYRHYCDQMKAVVSSFEAVAG GAA VYSALASKAMSRHFRCLRD
Sbjct: 324 KRKTKLLSMLEEVERRYRHYCDQMKAVVSSFEAVAGAGAAMVYSALASKAMSRHFRCLRD 383

Query: 347 GIVGQIQATKKAMGEKDPVAPGTSRGETPRLKIIDQTLRQQRAFQQMSMMESHPWRPQRG 406
           GIV QI ATKKAMGEKDPVAPGT++GETPRL+I+DQTLRQQRA QQM+MMESHPWRPQRG
Sbjct: 384 GIVAQIHATKKAMGEKDPVAPGTTKGETPRLRILDQTLRQQRAIQQMTMMESHPWRPQRG 443

Query: 407 LPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQV 447
           LPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQV
Sbjct: 444 LPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQV 484

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359474075|ref|XP_002279230.2| PREDICTED: homeobox protein BEL1 homolog [Vitis vinifera] Back     alignment and taxonomy information
>gi|356528643|ref|XP_003532909.1| PREDICTED: homeobox protein BEL1 homolog [Glycine max] Back     alignment and taxonomy information
>gi|356513359|ref|XP_003525381.1| PREDICTED: homeobox protein BEL1 homolog [Glycine max] Back     alignment and taxonomy information
>gi|356539654|ref|XP_003538310.1| PREDICTED: homeobox protein BEL1 homolog [Glycine max] Back     alignment and taxonomy information
>gi|356497253|ref|XP_003517476.1| PREDICTED: homeobox protein BEL1 homolog [Glycine max] Back     alignment and taxonomy information
>gi|224058451|ref|XP_002299516.1| predicted protein [Populus trichocarpa] gi|222846774|gb|EEE84321.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297742224|emb|CBI34373.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|365222892|gb|AEW69798.1| Hop-interacting protein THI035 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|22652121|gb|AAN03624.1|AF406700_1 BEL1-related homeotic protein 14 [Solanum tuberosum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query454
TAIR|locus:2177856 611 BEL1 "AT5G41410" [Arabidopsis 0.425 0.315 0.633 1.2e-69
TAIR|locus:2049035 627 BLH4 "BEL1-like homeodomain 4" 0.537 0.389 0.523 1.2e-69
TAIR|locus:2115000 739 BLH2 "AT4G36870" [Arabidopsis 0.491 0.301 0.562 4.2e-69
TAIR|locus:2039250 680 BLH1 "AT2G35940" [Arabidopsis 0.392 0.261 0.586 5.2e-59
TAIR|locus:2018398 524 BLH3 "AT1G75410" [Arabidopsis 0.508 0.440 0.464 1.8e-52
TAIR|locus:2139614 532 BLH6 "AT4G34610" [Arabidopsis 0.475 0.406 0.526 2.1e-52
TAIR|locus:2013154 538 BEL10 "AT1G19700" [Arabidopsis 0.502 0.423 0.470 4.8e-52
TAIR|locus:2042609 482 BLH7 "AT2G16400" [Arabidopsis 0.488 0.460 0.502 7.2e-52
TAIR|locus:2185183 575 RPL "AT5G02030" [Arabidopsis t 0.488 0.386 0.424 1.1e-44
TAIR|locus:2018457290 BLH11 "BEL1-like homeodomain 1 0.488 0.765 0.363 2.1e-36
TAIR|locus:2177856 BEL1 "AT5G41410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 669 (240.6 bits), Expect = 1.2e-69, Sum P(2) = 1.2e-69
 Identities = 133/210 (63%), Positives = 165/210 (78%)

Query:   255 KSNKAKQQ--WD----------DENAGSSSRKQ--SLCSLEFMELQKRKTKLLSMLEEVD 300
             K  K KQQ  WD          D++A +SS+K    L SLEFMELQKRK KLLSMLEE+ 
Sbjct:   229 KKQKGKQQEEWDTSHHSNNDQHDQSATTSSKKHVPPLHSLEFMELQKRKAKLLSMLEELK 288

Query:   301 RRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQIQATKKAMG 360
             RRY HY +QM+   ++FEA  G G A +Y+ALAS+AMSRHFRCL+DG+VGQIQAT +A+G
Sbjct:   289 RRYGHYREQMRVAAAAFEAAVGLGGAEIYTALASRAMSRHFRCLKDGLVGQIQATSQALG 348

Query:   361 EKDPVAPGTS---RGETPRLKIIDQTLRQQRAFQQMSMMESHPWRPQRGLPERSVSVLRA 417
             E++      S   RGETPRL+++DQ LRQQ++++QM+++++HPWRPQRGLPER+V+ LRA
Sbjct:   349 EREEDNRAVSIAARGETPRLRLLDQALRQQKSYRQMTLVDAHPWRPQRGLPERAVTTLRA 408

Query:   418 WLFEHFLHPYPSDVDKHILARQTGLSRSQV 447
             WLFEHFLHPYPSDVDKHILARQTGLSRSQV
Sbjct:   409 WLFEHFLHPYPSDVDKHILARQTGLSRSQV 438
GO:0003677 "DNA binding" evidence=ISS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0048481 "ovule development" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0009506 "plasmodesma" evidence=IDA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0048513 "organ development" evidence=RCA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2049035 BLH4 "BEL1-like homeodomain 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115000 BLH2 "AT4G36870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039250 BLH1 "AT2G35940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018398 BLH3 "AT1G75410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139614 BLH6 "AT4G34610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013154 BEL10 "AT1G19700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042609 BLH7 "AT2G16400" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185183 RPL "AT5G02030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018457 BLH11 "BEL1-like homeodomain 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00002560001
SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (432 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query454
pfam07526139 pfam07526, POX, Associated with HOX 2e-57
smart00574140 smart00574, POX, domain associated with HOX domain 4e-50
pfam0592040 pfam05920, Homeobox_KN, Homeobox KN domain 7e-11
cd0008659 cd00086, homeodomain, Homeodomain; DNA binding dom 0.001
>gnl|CDD|219452 pfam07526, POX, Associated with HOX Back     alignment and domain information 
 Score =  185 bits (472), Expect = 2e-57
 Identities = 76/140 (54%), Positives = 89/140 (63%), Gaps = 13/140 (9%)

Query: 223 FQLRNSKYLAPAQEILKEFCSLGTKQNDATKLKSNKAKQQWDDENA------------GS 270
             LR SKYL PAQE+L+EFCS+G K        SN A+   +   A             S
Sbjct: 1   SVLRGSKYLKPAQELLEEFCSVG-KNKALDDDSSNGAENGANSSGASSGDGGGSSAGDSS 59

Query: 271 SSRKQSLCSLEFMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYS 330
            S    L + E  ELQ++K KLLSMLEEVDRRYR Y DQM+ V+SSFEAVAG GAA+ Y+
Sbjct: 60  DSSSPELSTAERQELQRKKAKLLSMLEEVDRRYRQYYDQMQMVISSFEAVAGLGAAKPYT 119

Query: 331 ALASKAMSRHFRCLRDGIVG 350
           ALA +AMSRHFRCLRD I G
Sbjct: 120 ALALQAMSRHFRCLRDAISG 139

The function of this domain is unknown. It is often found in plant proteins associated with pfam00046. Length = 139
>gnl|CDD|214728 smart00574, POX, domain associated with HOX domains Back     alignment and domain information
>gnl|CDD|203350 pfam05920, Homeobox_KN, Homeobox KN domain Back     alignment and domain information
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 454
PF07526140 POX: Associated with HOX; InterPro: IPR006563 This 100.0
smart00574140 POX domain associated with HOX domains. 100.0
KOG0773342 consensus Transcription factor MEIS1 and related H 100.0
KOG0774334 consensus Transcription factor PBX and related HOX 99.57
PF0592040 Homeobox_KN: Homeobox KN domain; InterPro: IPR0084 99.49
cd0008659 homeodomain Homeodomain; DNA binding domains invol 99.05
KOG0775304 consensus Transcription factor SIX and related HOX 98.96
smart0038956 HOX Homeodomain. DNA-binding factors that are invo 98.96
PF0004657 Homeobox: Homeobox domain not present here.; Inter 98.79
TIGR0156558 homeo_ZF_HD homeobox domain, ZF-HD class. This mod 97.82
KOG0773 342 consensus Transcription factor MEIS1 and related H 97.17
KOG0842 307 consensus Transcription factor tinman/NKX2-3, cont 95.99
KOG0493342 consensus Transcription factor Engrailed, contains 95.98
KOG0486 351 consensus Transcription factor PTX1, contains HOX 95.77
KOG2251 228 consensus Homeobox transcription factor [Transcrip 95.74
KOG0843197 consensus Transcription factor EMX1 and related HO 95.66
PF1156956 Homez: Homeodomain leucine-zipper encoding, Homez; 95.61
COG5576156 Homeodomain-containing transcription factor [Trans 95.48
KOG0483198 consensus Transcription factor HEX, contains HOX a 94.72
KOG3802398 consensus Transcription factor OCT-1, contains POU 94.43
KOG0488309 consensus Transcription factor BarH and related HO 94.38
KOG2252558 consensus CCAAT displacement protein and related h 94.36
KOG0487308 consensus Transcription factor Abd-B, contains HOX 94.3
KOG0485 268 consensus Transcription factor NKX-5.1/HMX1, conta 93.73
KOG0489261 consensus Transcription factor zerknullt and relat 93.65
KOG0850245 consensus Transcription factor DLX and related pro 93.3
KOG0492246 consensus Transcription factor MSH, contains HOX d 91.53
KOG0494 332 consensus Transcription factor CHX10 and related H 91.41
KOG4577 383 consensus Transcription factor LIM3, contains LIM 90.93
KOG0490 235 consensus Transcription factor, contains HOX domai 89.52
KOG0491194 consensus Transcription factor BSH, contains HOX d 89.51
KOG0849 354 consensus Transcription factor PRD and related pro 87.68
KOG0484125 consensus Transcription factor PHOX2/ARIX, contain 84.34
PF11285283 DUF3086: Protein of unknown function (DUF3086); In 81.83
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors Back     alignment and domain information 
Probab=100.00  E-value=3e-48  Score=346.26  Aligned_cols=127  Identities=56%  Similarity=0.797  Sum_probs=100.3

Q ss_pred             eccCCcccchHHHHHHHHhccCccccchhhh-hhhh---hh--ccC-CCCC---C--CCCCcccccCchhHHHHHHHHHH
Q 012889          224 QLRNSKYLAPAQEILKEFCSLGTKQNDATKL-KSNK---AK--QQW-DDEN---A--GSSSRKQSLCSLEFMELQKRKTK  291 (454)
Q Consensus       224 ~l~~SRYLkpAQeLLdE~~sv~~~~~~~~~~-~~~~---~~--~~~-~~~~---~--~~ss~~~~lss~er~elq~KKtK  291 (454)
                      +|++|||||||||||||||+|+++....... +...   ..  ... ..+.   .  ++...++++++++|+|+|+||+|
T Consensus         2 ~l~~SryLk~aQeLL~E~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~e~q~kK~K   81 (140)
T PF07526_consen    2 VLLGSRYLKPAQELLDEFCSVGGANKKKSDDSSSGAPGGANSSGSSSSSGGSSSSSSSSDSSSPELSPAERQELQRKKAK   81 (140)
T ss_pred             ccccchhHHHHHHHHHHHHcccchhhhcchhhccccccccccCCCCCCCCCCCCCccccCCCCCCCChhhHHHHHHHHHH
Confidence            6999999999999999999999832110000 0000   00  000 0000   0  11223478999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhHHHHHHHHHHHhhhHHHHHHH
Q 012889          292 LLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVG  350 (454)
Q Consensus       292 LLsMLdEVdrRYrqY~~Qmq~VvssFe~vAG~gaA~~YtalAlramSrhFr~LrdaI~~  350 (454)
                      ||+||||||+||||||||||+||+|||+|||+|+|+|||+|||||||||||||||||++
T Consensus        82 Ll~mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqamSrhFR~LRdaI~~  140 (140)
T PF07526_consen   82 LLSMLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQAMSRHFRCLRDAISD  140 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999963

>smart00574 POX domain associated with HOX domains Back     alignment and domain information
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription] Back     alignment and domain information
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [] Back     alignment and domain information
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner Back     alignment and domain information
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription] Back     alignment and domain information
>smart00389 HOX Homeodomain Back     alignment and domain information
>PF00046 Homeobox: Homeobox domain not present here Back     alignment and domain information
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class Back     alignment and domain information
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription] Back     alignment and domain information
>KOG2251 consensus Homeobox transcription factor [Transcription] Back     alignment and domain information
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A Back     alignment and domain information
>COG5576 Homeodomain-containing transcription factor [Transcription] Back     alignment and domain information
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription] Back     alignment and domain information
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription] Back     alignment and domain information
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription] Back     alignment and domain information
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0485 consensus Transcription factor NKX-5 Back     alignment and domain information
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription] Back     alignment and domain information
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription] Back     alignment and domain information
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription] Back     alignment and domain information
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription] Back     alignment and domain information
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query454
2lk2_A89 Solution Nmr Structure Of Homeobox Domain (171-248) 2e-06
1x2n_A73 Solution Structure Of The Homeobox Domain Of Human 1e-05
3k2a_A67 Crystal Structure Of The Homeobox Domain Of Human H 1e-05
2dmn_A83 The Solution Structure Of The Homeobox Domain Of Hu 4e-04
>pdb|2LK2|A Chain A, Solution Nmr Structure Of Homeobox Domain (171-248) Of Human Homeobox Protein Tgif1, Northeast Structural Genomics Consortium Target Hr4411b Length = 89 Back     alignment and structure 
Iteration: 1

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 31/42 (73%)
Query: 407 LPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVC 448
           LP+ SV +LR WL+EH  + YPS+ +K +L++QT LS  QVC
Sbjct: 12  LPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVC 53
>pdb|1X2N|A Chain A, Solution Structure Of The Homeobox Domain Of Human Homeobox Protein Pknox1 Length = 73 Back     alignment and structure
>pdb|3K2A|A Chain A, Crystal Structure Of The Homeobox Domain Of Human Homeobox Protein Meis2 Length = 67 Back     alignment and structure
>pdb|2DMN|A Chain A, The Solution Structure Of The Homeobox Domain Of Human Homeobox Protein Tgif2lx Length = 83 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query454
2lk2_A89 Homeobox protein TGIF1; NESG, structural genomics, 3e-22
1b72_B87 Protein (PBX1); homeodomain, DNA, complex, DNA-bin 6e-21
2dmn_A83 Homeobox protein TGIF2LX; TGFB-induced factor 2-li 4e-20
1puf_B73 PRE-B-cell leukemia transcription factor-1; homeod 8e-20
1x2n_A73 Homeobox protein pknox1; homeobox domain, structur 2e-19
1du6_A64 PBX1, homeobox protein PBX1; homeodomain, gene reg 4e-19
3k2a_A67 Homeobox protein MEIS2; homeobox domain, DNA-bindi 9e-18
1le8_B83 Mating-type protein alpha-2; matalpha2, isothermal 2e-17
1k61_A60 Mating-type protein alpha-2; protein-DNA complex, 3e-17
1mnm_C87 Protein (MAT alpha-2 transcriptional repressor); t 1e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens} Length = 89 Back     alignment and structure
 Score = 89.5 bits (222), Expect = 3e-22
 Identities = 24/53 (45%), Positives = 33/53 (62%)

Query: 396 MESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVC 448
           M  H       LP+ SV +LR WL+EH  + YPS+ +K +L++QT LS  QVC
Sbjct: 1   MGHHHHHHSHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVC 53
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P Length = 87 Back     alignment and structure
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens} Length = 83 Back     alignment and structure
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B* Length = 73 Back     alignment and structure
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 73 Back     alignment and structure
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1 Length = 64 Back     alignment and structure
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} Length = 67 Back     alignment and structure
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* Length = 83 Back     alignment and structure
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 Length = 87 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query454
2lk2_A89 Homeobox protein TGIF1; NESG, structural genomics, 99.51
2dmn_A83 Homeobox protein TGIF2LX; TGFB-induced factor 2-li 99.51
1x2n_A73 Homeobox protein pknox1; homeobox domain, structur 99.44
1du6_A64 PBX1, homeobox protein PBX1; homeodomain, gene reg 99.43
3k2a_A67 Homeobox protein MEIS2; homeobox domain, DNA-bindi 99.42
1puf_B73 PRE-B-cell leukemia transcription factor-1; homeod 99.38
1k61_A60 Mating-type protein alpha-2; protein-DNA complex, 99.37
1b72_B87 Protein (PBX1); homeodomain, DNA, complex, DNA-bin 99.34
1mnm_C87 Protein (MAT alpha-2 transcriptional repressor); t 99.33
1le8_B83 Mating-type protein alpha-2; matalpha2, isothermal 99.31
1akh_A61 Protein (mating-type protein A-1); complex (TWO DN 99.03
2ecc_A76 Homeobox and leucine zipper protein homez; homeobo 99.0
1bw5_A66 ISL-1HD, insulin gene enhancer protein ISL-1; DNA- 98.89
2da4_A80 Hypothetical protein DKFZP686K21156; homeobox doma 98.88
2dmu_A70 Homeobox protein goosecoid; homeobox domain, three 98.86
2e1o_A70 Homeobox protein PRH; DNA binding protein, structu 98.83
2da1_A70 Alpha-fetoprotein enhancer binding protein; homeob 98.8
2da2_A70 Alpha-fetoprotein enhancer binding protein; homeob 98.8
1jgg_A60 Segmentation protein EVEN-skipped; homeodomain, pr 98.79
1ig7_A58 Homeotic protein MSX-1; helix-turn-helix, transcri 98.79
2cra_A70 Homeobox protein HOX-B13; DNA-binding, transcripti 98.78
2k40_A67 Homeobox expressed in ES cells 1; thermostable hom 98.78
2djn_A70 Homeobox protein DLX-5; structural genomics, NPPSF 98.78
2dmq_A80 LIM/homeobox protein LHX9; homeobox domain, three 98.78
2hdd_A61 Protein (engrailed homeodomain Q50K); DNA binding, 98.77
2da3_A80 Alpha-fetoprotein enhancer binding protein; homeob 98.75
3rkq_A58 Homeobox protein NKX-2.5; helix-turn-helix, DNA bi 98.74
1fjl_A81 Paired protein; DNA-binding protein, paired BOX, t 98.74
2h1k_A63 IPF-1, pancreatic and duodenal homeobox 1, homeodo 98.73
2dn0_A76 Zinc fingers and homeoboxes protein 3; triple home 98.7
2dms_A80 Homeobox protein OTX2; homeobox domain, three heli 98.69
2vi6_A62 Homeobox protein nanog; homeodomain, DNA-binding, 98.68
2dmt_A80 Homeobox protein BARH-like 1; homeobox domain, thr 98.68
3a02_A60 Homeobox protein aristaless; homeodomain, developm 98.67
2l7z_A73 Homeobox protein HOX-A13; gene regulation; NMR {Ho 98.66
1wh5_A80 ZF-HD homeobox family protein; structural genomics 98.66
1zq3_P68 PRD-4, homeotic bicoid protein; protein-DNA comple 98.65
1ftt_A68 TTF-1 HD, thyroid transcription factor 1 homeodoma 98.64
1yz8_P68 Pituitary homeobox 2; DNA binding protein, transcr 98.63
2cue_A80 Paired box protein PAX6; homeobox domain, transcri 98.63
1ahd_P68 Antennapedia protein mutant; DNA binding protein/D 98.62
1nk2_P77 Homeobox protein VND; homeodomain, DNA-binding pro 98.62
2d5v_A164 Hepatocyte nuclear factor 6; transcription factor, 98.62
2m0c_A75 Homeobox protein aristaless-like 4; structural gen 98.57
1puf_A77 HOX-1.7, homeobox protein HOX-A9; homeodomian, pro 98.57
2cuf_A95 FLJ21616 protein; homeobox domain, hepatocyte tran 98.56
2hi3_A73 Homeodomain-only protein; transcription; NMR {Mus 98.55
2da5_A75 Zinc fingers and homeoboxes protein 3; homeobox do 98.55
3nau_A66 Zinc fingers and homeoboxes protein 2; ZHX2, corep 98.55
2kt0_A84 Nanog, homeobox protein nanog; homeodomain, struct 98.54
3d1n_I151 POU domain, class 6, transcription factor 1; prote 98.54
1uhs_A72 HOP, homeodomain only protein; structural genomics 98.53
2ly9_A74 Zinc fingers and homeoboxes protein 1; structural 98.52
2ecb_A89 Zinc fingers and homeoboxes protein 1; homeobox do 98.52
3a03_A56 T-cell leukemia homeobox protein 2; homeodomain, d 98.51
1b8i_A81 Ultrabithorax, protein (ultrabithorax homeotic pro 98.5
3a01_A93 Homeodomain-containing protein; homeodomain, prote 98.5
2r5y_A88 Homeotic protein sex combs reduced; homeodomain; H 98.43
1b72_A97 Protein (homeobox protein HOX-B1); homeodomain, DN 98.42
3nar_A96 ZHX1, zinc fingers and homeoboxes protein 1; corep 98.41
2dmp_A89 Zinc fingers and homeoboxes protein 2; homeobox do 98.39
1wh7_A80 ZF-HD homeobox family protein; homeobox domain, st 98.37
2e19_A64 Transcription factor 8; homeobox domain, structura 98.28
1wi3_A71 DNA-binding protein SATB2; homeodomain, helix-turn 98.27
1au7_A146 Protein PIT-1, GHF-1; complex (DNA-binding protein 98.26
1e3o_C160 Octamer-binding transcription factor 1; transcript 98.21
2xsd_C164 POU domain, class 3, transcription factor 1; trans 98.17
2h8r_A221 Hepatocyte nuclear factor 1-beta; trasncription fa 98.16
2cqx_A72 LAG1 longevity assurance homolog 5; homeodomain, D 98.09
1lfb_A99 Liver transcription factor (LFB1); transcription r 98.08
1mh3_A421 Maltose binding-A1 homeodomain protein chimera; MA 98.08
2da6_A102 Hepatocyte nuclear factor 1-beta; homeobox domain, 98.08
3l1p_A155 POU domain, class 5, transcription factor 1; POU, 98.06
2l9r_A69 Homeobox protein NKX-3.1; structural genomics, nor 98.05
1ic8_A194 Hepatocyte nuclear factor 1-alpha; transcription r 97.82
1x2m_A64 LAG1 longevity assurance homolog 6; homeobox domai 97.71
2da7_A71 Zinc finger homeobox protein 1B; homeobox domain, 97.44
2ys9_A70 Homeobox and leucine zipper protein homez; homeodo 90.48
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens} Back     alignment and structure
Probab=99.51  E-value=2.6e-15  Score=125.22  Aligned_cols=49  Identities=45%  Similarity=0.756  Sum_probs=47.4

Q ss_pred             CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889          405 RGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV  453 (454)
Q Consensus       405 RgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN  453 (454)
                      .-||++++.+|++||.+|..||||++++|..||++||||..||+|||+|
T Consensus        10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~N   58 (89)
T 2lk2_A           10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFIN   58 (89)
T ss_dssp             CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            3499999999999999999999999999999999999999999999998
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens} Back     alignment and structure
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B* Back     alignment and structure
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 Back     alignment and structure
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P Back     alignment and structure
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 Back     alignment and structure
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* Back     alignment and structure
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A* Back     alignment and structure
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1 Back     alignment and structure
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 Back     alignment and structure
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens} Back     alignment and structure
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A Back     alignment and structure
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens} Back     alignment and structure
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B Back     alignment and structure
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus} Back     alignment and structure
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus} Back     alignment and structure
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A Back     alignment and structure
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A* Back     alignment and structure
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 Back     alignment and structure
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1 Back     alignment and structure
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1 Back     alignment and structure
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P Back     alignment and structure
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A Back     alignment and structure
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A Back     alignment and structure
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Back     alignment and structure
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A Back     alignment and structure
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} Back     alignment and structure
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens} Back     alignment and structure
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens} Back     alignment and structure
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens} Back     alignment and structure
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A* Back     alignment and structure
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster} Back     alignment and structure
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A* Back     alignment and structure
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens} Back     alignment and structure
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 Back     alignment and structure
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1 Back     alignment and structure
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A Back     alignment and structure
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus} Back     alignment and structure
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens} Back     alignment and structure
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A Back     alignment and structure
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A Back     alignment and structure
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A Back     alignment and structure
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 Back     alignment and structure
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 454
d1x2na162 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (H 1e-10
d1k61a_60 a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast 6e-08
d1pufb_73 a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 96 9e-07
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Length = 62 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein pknox1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (132), Expect = 1e-10
 Identities = 21/47 (44%), Positives = 34/47 (72%), Gaps = 1/47 (2%)

Query: 402 RPQRG-LPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQV 447
           + +RG LP+ + +V+R+WLF+H  HPYP++ +K  +A QT L+  QV
Sbjct: 3   KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQV 49
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 60 Back     information, alignment and structure
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Length = 73 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query454
d1x2na162 Homeobox protein pknox1 {Human (Homo sapiens) [Tax 99.63
d1pufb_73 pbx1 {Human (Homo sapiens) [TaxId: 9606]} 99.58
d1k61a_60 mat alpha2 Homeodomain {Baker's yeast (Saccharomyc 99.53
d1wi3a_71 DNA-binding protein SATB2 {Human (Homo sapiens) [T 99.08
d2ecca176 Homeobox-leucine zipper protein Homez {Human (Homo 98.98
d1le8a_53 Mating type protein A1 Homeodomain {Baker's yeast 98.9
d1bw5a_66 Insulin gene enhancer protein isl-1 {Rat (Rattus n 98.87
d1s7ea150 Hepatocyte nuclear factor 6 {Mouse (Mus musculus) 98.86
d1au7a158 Pit-1 POU homeodomain {Rat (Rattus norvegicus) [Ta 98.82
d2ecba176 Zinc fingers and homeoboxes protein 1, ZHX1 {Human 98.8
d1fjla_65 Paired protein {Fruit fly (Drosophila melanogaster 98.79
d1p7ia_53 Engrailed Homeodomain {Drosophila melanogaster [Ta 98.79
d1yz8p160 Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 98.78
d2e1oa157 Homeobox protein prh {Human (Homo sapiens) [TaxId: 98.78
d1ocpa_67 Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId 98.75
d1e3oc157 Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId 98.71
d2craa158 Homeobox protein hox-b13 {Human (Homo sapiens) [Ta 98.68
d1ig7a_58 Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10 98.67
d1zq3p167 Homeotic bicoid protein {Fruit fly (Drosophila mel 98.65
d1pufa_77 Homeobox protein hox-a9 {Mouse (Mus musculus) [Tax 98.65
d1wh7a_80 ZF-HD homeobox protein At4g24660 {Thale cress (Ara 98.64
d1ftta_68 Thyroid transcription factor 1 homeodomain {Rat (R 98.64
d1x2ma152 Lag1 longevity assurance homolog 6, LASS6 {Mouse ( 98.61
d2cuea168 Paired box protein pax6 {Human (Homo sapiens) [Tax 98.6
d2cqxa159 LAG1 longevity assurance homolog 5, LASS5 {Mouse ( 98.58
d1vnda_77 VND/NK-2 protein {Fruit fly (Drosophila melanogast 98.58
d1b72a_88 Homeobox protein hox-b1 {Human (Homo sapiens) [Tax 98.54
d1jgga_57 Even-skipped homeodomain {Fruit fly (Drosophila me 98.52
d2cufa182 Homeobox-containing protein 1, HMBOX1 (Flj21616) { 98.5
d9anta_56 Antennapedia Homeodomain {Drosophila melanogaster 98.44
d1uhsa_72 Homeodomain-only protein, Hop {Mouse (Mus musculus 98.36
d1lfba_78 Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rat 98.3
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein pknox1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=5.2e-17  Score=124.43  Aligned_cols=52  Identities=38%  Similarity=0.679  Sum_probs=48.8

Q ss_pred             CCCC-CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889          402 RPQR-GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV  453 (454)
Q Consensus       402 RprR-gLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN  453 (454)
                      |++| .||++++.+|++||.+|..||||+.+||.+||.+|||+..||.|||.|
T Consensus         3 krkR~~~~~~~~~iL~~wf~~~~~nPyPs~~e~~~La~~~~l~~~qI~~WF~N   55 (62)
T d1x2na1           3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFIN   55 (62)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHhHHHHHH
Confidence            3444 499999999999999999999999999999999999999999999998
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]} Back     information, alignment and structure