Citrus Sinensis ID: 012892

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450----
MICSYLIIFNCMYLYPLINNYMILYACAGNAKKSSLKVVHKHGPCFKPYSNGEKAASPSPSVSHAEILRQDQSRVKSIHSRLSKNSGSLDEIRQSDDATLPAKDGSVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGLFGGAAGLMGLGRDPISLVSQTATKYKKLFSYCLPSSASSTGHLTFGPGASKSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQVCLAFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGGCS
cHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEEEEcccccEEEEEEEccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEEEEEEEEEEccccccccEEEEEEcccccccccccEEEEccccccHHHHHHHHcccccEEEEcccccccccEEEEccccccccEEcccccccccccccEEEEcEEEEccEEEcccccccccccEEEEcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEccccEEEEccccEEEEEcccEEEEEEEcccccccEEEEEEEEEEEEEEEEEccccEEEEEccccc
cccHEEEEHHHEEEccccccccccHcccccccccEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEEEccccEEEEEEEEccccccEEEcccccHHHHccccccccccccccccccccccHHHHHccccccccccccccccEEEEEEccccccEEEEEEEEEEEccccEcccEEEEEcccccccccccccEEEccccccEEEEccccccccEEEEEEccccccccEEEEccccccccccccEEcccccccEEEEEEEEEEEccEEEEccccHcccccEEEEcccEEEcccHHHHHHHHHHHHHHHcccccccccccccccEEcccccEEEccEEEEEEEccEEEEcccccEEEEccccEEEEEEEcccccccEEEEEEEEEccEEEEEEccccEEEEcccccc
MICSYLIIFNCMYLYPLINNYMILYACAGNAKKSSLKVVhkhgpcfkpysngekaaspspsvshaeILRQDQSRVKSIHSrlsknsgsldeirqsddatlpakdgsvvgagNYIVTVgigtpkkdlSLIFdtgsdltwtqcepcvkycyeqkepkfdptvsqsysnvscsSTICTSlqsatgnspacasstclygiqygdssfsigffgketltltprdvfpnflfgcgqnnrglfggaaglmglgrdpisLVSQTATKYKKLFSyclpssasstghltfgpgasksvqftplssisggssfyGLEMIGISVGGQKLSIAASVFttagtiidsgtvitrlppdaytpLRTAFRQFMskyptapalslldtcydfskystvtlpqislffsggvevsvdkTGIMYASNISQVCLafagnsdptdvsifgntqqHTLEVVYDVAGGKVGFAAGGCS
MICSYLIIFNCMYLYPLINNYMILYACAGNAKKSSLKVVHKHGPCFKPYSNGEKAASPSPSVSHAEILRQDQSRVKSIHsrlsknsgsldeirqsddatlpakdgsvvgaGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGLFGGAAGLMGLGRDPISLVSQTATKYKKLFSYCLPSSASSTGHLTFGPGASKSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGtiidsgtvitrlppdAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQVCLAFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGGCS
MICSYLIIFNCMYLYPLINNYMILYACAGNAKKSSLKVVHKHGPCFKPYSNGEKAASPSPSVSHAEILRQDQSRVKSIHSRLSKNSGSLDEIRQSDDATLPAKDGSVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVsqsysnvscssTICTSLQSATGNSPACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRglfggaaglmglgRDPISLVSQTATKYKKLFSYCLPSSASSTGHLTFGPGASKSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQVCLAFAGNSDPTDVSIFGNTQQHTLEVVYDvaggkvgfaaggCS
*ICSYLIIFNCMYLYPLINNYMILYACAGNAKKSSLKVVHKHGPCF***********************************************************SVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKE**********YSNVSCSSTICTSLQSATGNSPACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGLFGGAAGLMGLGRDPISLVSQTATKYKKLFSYCLPS*******************FTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQVCLAFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAA****
**CSYLIIFNCMYLYPLINNYM***************VVHKHG********************HAEILRQDQSRV*****************************GSVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDP*VSQSYSNVSCSSTICTSLQS********ASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGLFGGAAGLMGLGRDPISLVSQTATKYKKLFSYCLPSSA**T*H**FGPGASKSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPLRTAFRQ**********LSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQVCLAFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGGC*
MICSYLIIFNCMYLYPLINNYMILYACAGNAKKSSLKVVHKHGPCFKPYSN**************EILRQDQSRVKSIHSRLSKNSGSLDEIRQSDDATLPAKDGSVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTS***********ASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGLFGGAAGLMGLGRDPISLVSQTATKYKKLFSYCLPSSASSTGHLTFGPGASKSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQVCLAFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGGCS
MICSYLIIFNCMYLYPLINNYMILYACAGNAKKSSLKVVHKHGPCFKPYSN*EKAASPSPSVSHAEILRQDQSRVKSIHSRLSKN************ATLPAKDGSVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGLFGGAAGLMGLGRDPISLVSQTATKYKKLFSYCLPSSASSTGHLTFGPGASKSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQVCLAFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGGC*
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MICSYLIIFNCMYLYPLINNYMILYACAGNAKKSSLKVVHKHGPCFKPYSNGEKAASPSPSVSHAEILRQDQSRVKSIHSRLSKNSGSLDEIRQSDDATLPAKDGSVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGLFGGAAGLMGLGRDPISLVSQTATKYKKLFSYCLPSSASSTGHLTFGPGASKSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQVCLAFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGGCS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query454 2.2.26 [Sep-21-2011]
Q9LHE3470 Protein ASPARTIC PROTEASE no no 0.896 0.865 0.355 2e-57
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.817 0.742 0.351 2e-55
Q766C2438 Aspartic proteinase nepen N/A no 0.792 0.821 0.370 1e-54
Q766C3437 Aspartic proteinase nepen N/A no 0.814 0.846 0.342 3e-49
Q6XBF8437 Aspartic proteinase CDR1 no no 0.737 0.766 0.362 8e-44
Q3EBM5447 Probable aspartic proteas no no 0.909 0.923 0.278 1e-32
Q9S9K4475 Aspartic proteinase-like no no 0.746 0.713 0.269 4e-27
Q9LZL3453 Aspartic proteinase PCS1 no no 0.713 0.715 0.292 9e-23
Q0IU52410 Aspartic proteinase Asp1 no no 0.403 0.446 0.320 2e-13
A2ZC67410 Aspartic proteinase Asp1 N/A no 0.405 0.448 0.301 6e-13
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function desciption
 Score =  223 bits (568), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 154/433 (35%), Positives = 229/433 (52%), Gaps = 26/433 (6%)

Query: 30  NAKKSSLKVVHKHGPCFKPYSNGEKAASPSPSVSHAEILRQDQSRVKSIHSRLS-KNSGS 88
           ++ K +L+++H+       Y N            HA  +R+D  RV +I  R+S K   S
Sbjct: 55  SSSKYTLRLLHRDRFPSVTYRNHHHRL-------HAR-MRRDTDRVSAILRRISGKVIPS 106

Query: 89  LDEIRQSDDATLPAKDGSVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYC 148
            D   + +D       G   G+G Y V +G+G+P +D  ++ D+GSD+ W QC+PC K C
Sbjct: 107 SDSRYEVNDFGSDIVSGMDQGSGEYFVRIGVGSPPRDQYMVIDSGSDMVWVQCQPC-KLC 165

Query: 149 YEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASSTCLYGIQYGDSSFSIGFF 208
           Y+Q +P FDP  S SY+ VSC S++C  ++++      C S  C Y + YGD S++ G  
Sbjct: 166 YKQSDPVFDPAKSGSYTGVSCGSSVCDRIENS-----GCHSGGCRYEVMYGDGSYTKGTL 220

Query: 209 GKETLTLTPRDVFPNFLFGCGQNNRGLFGGAAGLMGLGRDPISLVSQTATKYKKLFSYCL 268
             ETLT   + V  N   GCG  NRG+F GAAGL+G+G   +S V Q + +    F YCL
Sbjct: 221 ALETLTFA-KTVVRNVAMGCGHRNRGMFIGAAGLLGIGGGSMSFVGQLSGQTGGAFGYCL 279

Query: 269 PSSAS-STGHLTFGPGA-SKSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFT- 325
            S  + STG L FG  A      + PL       SFY + + G+ VGG ++ +   VF  
Sbjct: 280 VSRGTDSTGSLVFGREALPVGASWVPLVRNPRAPSFYYVGLKGLGVGGVRIPLPDGVFDL 339

Query: 326 ----TAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVT 381
                 G ++D+GT +TRLP  AY   R  F+   +  P A  +S+ DTCYD S + +V 
Sbjct: 340 TETGDGGVVMDTGTAVTRLPTAAYVAFRDGFKSQTANLPRASGVSIFDTCYDLSGFVSVR 399

Query: 382 LPQISLFFSGGVEVSVD-KTGIMYASNISQVCLAFAGNSDPTDVSIFGNTQQHTLEVVYD 440
           +P +S +F+ G  +++  +  +M   +    C AFA +  PT +SI GN QQ  ++V +D
Sbjct: 400 VPTVSFYFTEGPVLTLPARNFLMPVDDSGTYCFAFAAS--PTGLSIIGNIQQEGIQVSFD 457

Query: 441 VAGGKVGFAAGGC 453
            A G VGF    C
Sbjct: 458 GANGFVGFGPNVC 470
Aspartic protease that may be involved in drought avoidance through abscisic acid signaling.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function description
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1 Back     alignment and function description
>sp|Q0IU52|ASP1_ORYSJ Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1 Back     alignment and function description
>sp|A2ZC67|ASP1_ORYSI Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query454
255548664494 Aspartic proteinase nepenthesin-2 precur 0.911 0.838 0.692 1e-156
225430555481 PREDICTED: aspartic proteinase nepenthes 0.920 0.869 0.639 1e-156
224142001490 predicted protein [Populus trichocarpa] 0.927 0.859 0.699 1e-154
22326716474 aspartyl protease family protein [Arabid 0.914 0.875 0.633 1e-151
297811185475 hypothetical protein ARALYDRAFT_325615 [ 0.914 0.873 0.633 1e-151
8979711446 nucleoid DNA-binding protein cnd41-like 0.962 0.979 0.6 1e-151
356527089488 PREDICTED: aspartic proteinase nepenthes 0.903 0.840 0.612 1e-149
356567196490 PREDICTED: aspartic proteinase nepenthes 0.903 0.836 0.615 1e-149
225430551490 PREDICTED: aspartic proteinase nepenthes 0.942 0.873 0.611 1e-148
449466304473 PREDICTED: protein ASPARTIC PROTEASE IN 0.909 0.873 0.591 1e-147
>gi|255548664|ref|XP_002515388.1| Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis] gi|223545332|gb|EEF46837.1| Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 293/423 (69%), Positives = 346/423 (81%), Gaps = 9/423 (2%)

Query: 32  KKSSLKVVHKHGPCFKPYSNGEKAASPSPSVSHAEILRQDQSRVKSIHSRLSKNSGSLDE 91
            K+ LKVVHKHGPC      G KA +         IL QDQSRV SIHS+LSK+SG L +
Sbjct: 81  NKAFLKVVHKHGPC-SDLRQGHKAEA-------QYILLQDQSRVDSIHSKLSKDSG-LSD 131

Query: 92  IRQSDDATLPAKDGSVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQ 151
           ++ +   TLPAKDGS++G+GNY VTVG+GTPKKD SLIFDTGSDLTWTQCEPCVK CY Q
Sbjct: 132 VKATAATTLPAKDGSIIGSGNYFVTVGLGTPKKDFSLIFDTGSDLTWTQCEPCVKSCYNQ 191

Query: 152 KEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASSTCLYGIQYGDSSFSIGFFGKE 211
           KE  F+P+ S SY+N+SC ST+C SL SATGN   CASSTC+YGIQYGDSSFSIGFFGKE
Sbjct: 192 KEAIFNPSQSTSYANISCGSTLCDSLASATGNIFNCASSTCVYGIQYGDSSFSIGFFGKE 251

Query: 212 TLTLTPRDVFPNFLFGCGQNNRGLFGGAAGLMGLGRDPISLVSQTATKYKKLFSYCLPSS 271
            L+LT  DVF +F FGCGQNN+GLFGGAAGL+GLGRD +SLVSQTA +Y K+FSYCLPSS
Sbjct: 252 KLSLTATDVFNDFYFGCGQNNKGLFGGAAGLLGLGRDKLSLVSQTAQRYNKIFSYCLPSS 311

Query: 272 ASSTGHLTFGPGASKSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTII 331
           +SSTG LTFG   SKS  FTPL++ISGGSSFYGL++ GISVGG+KL+I+ SVF+TAGTII
Sbjct: 312 SSSTGFLTFGGSTSKSASFTPLATISGGSSFYGLDLTGISVGGRKLAISPSVFSTAGTII 371

Query: 332 DSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSG 391
           DSGTVITRLPP AY+ L + FR+ MS+YP APALS+LDTC+DFS + T+++P+I LFFSG
Sbjct: 372 DSGTVITRLPPAAYSALSSTFRKLMSQYPAAPALSILDTCFDFSNHDTISVPKIGLFFSG 431

Query: 392 GVEVSVDKTGIMYASNISQVCLAFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAG 451
           GV V +DKTGI Y ++++QVCLAFAGNSD +DV+IFGN QQ TLEVVYD A G+VGFA  
Sbjct: 432 GVVVDIDKTGIFYVNDLTQVCLAFAGNSDASDVAIFGNVQQKTLEVVYDGAAGRVGFAPA 491

Query: 452 GCS 454
           GCS
Sbjct: 492 GCS 494

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225430555|ref|XP_002285593.1| PREDICTED: aspartic proteinase nepenthesin-2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224142001|ref|XP_002324349.1| predicted protein [Populus trichocarpa] gi|222865783|gb|EEF02914.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|22326716|ref|NP_196638.2| aspartyl protease family protein [Arabidopsis thaliana] gi|18700103|gb|AAL77663.1| AT5g10770/T30N20_40 [Arabidopsis thaliana] gi|24111269|gb|AAN46758.1| At5g10770/T30N20_40 [Arabidopsis thaliana] gi|332004211|gb|AED91594.1| aspartyl protease family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297811185|ref|XP_002873476.1| hypothetical protein ARALYDRAFT_325615 [Arabidopsis lyrata subsp. lyrata] gi|297319313|gb|EFH49735.1| hypothetical protein ARALYDRAFT_325615 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|8979711|emb|CAB96832.1| nucleoid DNA-binding protein cnd41-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356527089|ref|XP_003532146.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356567196|ref|XP_003551807.1| PREDICTED: aspartic proteinase nepenthesin-2-like [Glycine max] Back     alignment and taxonomy information
>gi|225430551|ref|XP_002283470.1| PREDICTED: aspartic proteinase nepenthesin-2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449466304|ref|XP_004150866.1| PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Cucumis sativus] gi|449485213|ref|XP_004157102.1| PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query454
TAIR|locus:2183730474 AT5G10770 "AT5G10770" [Arabido 0.953 0.913 0.556 5.3e-127
TAIR|locus:2183715464 AT5G10760 [Arabidopsis thalian 0.852 0.834 0.503 4.4e-100
TAIR|locus:2017799484 AT1G79720 [Arabidopsis thalian 0.797 0.747 0.388 6e-64
TAIR|locus:2076745483 AT3G61820 [Arabidopsis thalian 0.865 0.813 0.356 7e-54
TAIR|locus:2035297485 AT1G01300 [Arabidopsis thalian 0.863 0.808 0.335 1.1e-53
TAIR|locus:2095365470 AT3G20015 [Arabidopsis thalian 0.808 0.780 0.334 6.3e-53
TAIR|locus:2095042500 ASPG1 "ASPARTIC PROTEASE IN GU 0.737 0.67 0.338 1.2e-49
TAIR|locus:2031225483 AT1G25510 [Arabidopsis thalian 0.823 0.774 0.322 2.3e-48
TAIR|locus:2145954437 CDR1 "CONSTITUTIVE DISEASE RES 0.768 0.798 0.324 7.5e-41
TAIR|locus:2024306449 AT1G09750 [Arabidopsis thalian 0.865 0.875 0.300 1.8e-39
TAIR|locus:2183730 AT5G10770 "AT5G10770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1247 (444.0 bits), Expect = 5.3e-127, P = 5.3e-127
 Identities = 246/442 (55%), Positives = 303/442 (68%)

Query:    14 LYPLINNYMILYACAGNAKKSSLKVVHKHGPCFKPYSNGEKAASPSPSVSHAEILRQDQS 73
             L P  ++  +L   A   K SSL V H+HG C +  +NG KA SP     H EILR DQ+
Sbjct:    41 LLPSSSSSCVLSPRASTTK-SSLHVTHRHGTCSR-LNNG-KATSPD----HVEILRLDQA 93

Query:    74 RVKSIHSRLSKNSGSLDEIRQSDDATLPAKDGSVVGAGNYIVTVGIGTPKKDLSLIFDTG 133
             RV SIHS+LSK   + D + +S    LPAKDGS +G+GNYIVTVG+GTPK DLSLIFDTG
Sbjct:    94 RVNSIHSKLSKKLAT-DHVSESKSTDLPAKDGSTLGSGNYIVTVGLGTPKNDLSLIFDTG 152

Query:   134 SDLTWTQCEPCVKYCYEQKEPKFDPTVXXXXXXXXXXXTICTSLQSATGNSPACASSTCL 193
             SDLTWTQC+PCV+ CY+QKEP F+P+              C SL SATGN+ +C++S C+
Sbjct:   153 SDLTWTQCQPCVRTCYDQKEPIFNPSKSTSYYNVSCSSAACGSLSSATGNAGSCSASNCI 212

Query:   194 YGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRXXXXXXXXXXXXXRDPISLV 253
             YGIQYGD SFS+GF  KE  TLT  DVF    FGCG+NN+             RD +S  
Sbjct:   213 YGIQYGDQSFSVGFLAKEKFTLTNSDVFDGVYFGCGENNQGLFTGVAGLLGLGRDKLSFP 272

Query:   254 SQTATKYKKLFSYCLPSSASSTGHLTFGP-GASKSVQFTPLSSISGGSSFYGLEMIGISV 312
             SQTAT Y K+FSYCLPSSAS TGHLTFG  G S+SV+FTP+S+I+ G+SFYGL ++ I+V
Sbjct:   273 SQTATAYNKIFSYCLPSSASYTGHLTFGSAGISRSVKFTPISTITDGTSFYGLNIVAITV 332

Query:   313 GGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCY 372
             GGQKL I ++VF+T G +IDSGTVITRLPP AY  LR++F+  MSKYPT   +S+LDTC+
Sbjct:   333 GGQKLPIPSTVFSTPGALIDSGTVITRLPPKAYAALRSSFKAKMSKYPTTSGVSILDTCF 392

Query:   373 DFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQVCLAFAGNSDPTDVSIFGNTQQ 432
             D S + TVT+P+++  FSGG  V +   GI Y   ISQVCLAFAGNSD ++ +IFGN QQ
Sbjct:   393 DLSGFKTVTIPKVAFSFSGGAVVELGSKGIFYVFKISQVCLAFAGNSDDSNAAIFGNVQQ 452

Query:   433 HTLEVVYDXXXXXXXXXXXXCS 454
              TLEVVYD            CS
Sbjct:   453 QTLEVVYDGAGGRVGFAPNGCS 474
GO:0003677 "DNA binding" evidence=ISS
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA
TAIR|locus:2183715 AT5G10760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2017799 AT1G79720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076745 AT3G61820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035297 AT1G01300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095365 AT3G20015 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095042 ASPG1 "ASPARTIC PROTEASE IN GUARD CELL 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031225 AT1G25510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145954 CDR1 "CONSTITUTIVE DISEASE RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024306 AT1G09750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.766
3rd Layer3.4.23.12LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00032824001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (481 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query454
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 1e-143
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 9e-70
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 1e-63
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 2e-41
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 4e-25
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 2e-23
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 4e-18
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 6e-16
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 2e-12
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 2e-10
cd05478317 cd05478, pepsin_A, Pepsin A, aspartic protease pro 3e-10
cd05488320 cd05488, Proteinase_A_fungi, Fungal Proteinase A , 2e-09
cd06097278 cd06097, Aspergillopepsin_like, Aspergillopepsin_l 5e-07
cd05473364 cd05473, beta_secretase_like, Beta-secretase, aspa 6e-06
cd05477318 cd05477, gastricsin, Gastricsins, asparate proteas 9e-06
PTZ00165482 PTZ00165, PTZ00165, aspartyl protease; Provisional 3e-05
cd05490325 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family 4e-05
cd05485329 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsi 7e-05
cd05486316 cd05486, Cathespin_E, Cathepsin E, non-lysosomal a 0.001
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information 
 Score =  411 bits (1059), Expect = e-143
 Identities = 169/346 (48%), Positives = 211/346 (60%), Gaps = 51/346 (14%)

Query: 112 NYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSS 171
            Y+VTVG+GTP +D ++I DTGSDLTW QC+PC                           
Sbjct: 1   EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC--------------------------- 33

Query: 172 TICTSLQSATGNSPACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQN 231
                               CLY + YGD S++ G    +TLTL   DV P F FGCG +
Sbjct: 34  --------------------CLYQVSYGDGSYTTGDLATDTLTLGSSDVVPGFAFGCGHD 73

Query: 232 NRGLFGGAAGLMGLGRDPISLVSQTATKYKKLFSYCLPSSAS-STGHLTFGPGASK--SV 288
           N GLFGGAAGL+GLGR  +SL SQTA+ Y  +FSYCLP  +S S+G+L+FG  AS     
Sbjct: 74  NEGLFGGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDRSSSSSGYLSFGAAASVPAGA 133

Query: 289 QFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPL 348
            FTP+ S     +FY + + GISVGG++L I  + F   G IIDSGTVITRLPP AY  L
Sbjct: 134 SFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAAL 193

Query: 349 RTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYA-SN 407
           R AFR  M+ YP AP  S+LDTCYD S + +V++P +SL F GG +V +D +G++Y   +
Sbjct: 194 RDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDD 253

Query: 408 ISQVCLAFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGGC 453
            SQVCLAFAG SD   +SI GN QQ T  VVYDVAGG++GFA GGC
Sbjct: 254 SSQVCLAFAGTSDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299

Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 299
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>gnl|CDD|133140 cd05473, beta_secretase_like, Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional Back     alignment and domain information
>gnl|CDD|133157 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|133152 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|133153 cd05486, Cathespin_E, Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 454
PLN03146431 aspartyl protease family protein; Provisional 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 100.0
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.96
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.9
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 97.9
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 96.51
PF1365090 Asp_protease_2: Aspartyl protease 96.2
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 93.48
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 92.07
PF08284135 RVP_2: Retroviral aspartyl protease; InterPro: IPR 90.28
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 90.07
COG3577215 Predicted aspartyl protease [General function pred 90.02
TIGR03698107 clan_AA_DTGF clan AA aspartic protease, AF_0612 fa 88.05
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 86.25
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 84.44
PF11925370 DUF3443: Protein of unknown function (DUF3443); In 82.38
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.4e-75  Score=593.09  Aligned_cols=401  Identities=35%  Similarity=0.635  Sum_probs=331.1

Q ss_pred             hhhhccCCCCceEEEEEcccCCCCCCCCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHhhhccCCCCCccccCCCcceecc
Q 012892           23 ILYACAGNAKKSSLKVVHKHGPCFKPYSNGEKAASPSPSVSHAEILRQDQSRVKSIHSRLSKNSGSLDEIRQSDDATLPA  102 (454)
Q Consensus        23 ~~~~~~~~~~~~~~~l~h~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~p~  102 (454)
                      .+.+..++..+++++|+||++|| ||+++++.++.+    +++++++|+++|++++.++...              ..|+
T Consensus        14 ~~~~~~~~~~~~~~~l~h~~~~~-sp~~~~~~~~~~----~~~~~~~~~~~r~~~~~~~~~~--------------~~~~   74 (431)
T PLN03146         14 ELSAAEAPKGGFTVDLIHRDSPK-SPFYNPSETPSQ----RLRNAFRRSISRVNHFRPTDAS--------------PNDP   74 (431)
T ss_pred             hhhhccccCCceEEEEEeCCCCC-CCCCCCCCChhH----HHHHHHHHHHHHHHHHhhcccc--------------CCcc
Confidence            33445567789999999999999 998776555555    7888999999998887654211              1233


Q ss_pred             ccCCccCcccEEEEEEeCCCCceEEEEEECCCceeeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccccccCCC
Q 012892          103 KDGSVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATG  182 (454)
Q Consensus       103 ~~~~~~~~~~Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~~~C~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~~~~  182 (454)
                      ..+...++++|+++|+||||||++.|++||||+++||+|++|.. |..|..+.|||++|+||+.++|+++.|..+..   
T Consensus        75 ~~~~~~~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~-C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~---  150 (431)
T PLN03146         75 QSDLISNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDD-CYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN---  150 (431)
T ss_pred             ccCcccCCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcc-cccCCCCcccCCCCCCCcccCCCCcccccCCC---
Confidence            33334557899999999999999999999999999999999974 99888899999999999999999999986543   


Q ss_pred             CCCCCC-CCCceeeeEeCCCCeEEEeEEEEEEEeCCC----ccccceeeeeeecCCCCCC-CcceeeecCCCCCccceeh
Q 012892          183 NSPACA-SSTCLYGIQYGDSSFSIGFFGKETLTLTPR----DVFPNFLFGCGQNNRGLFG-GAAGLMGLGRDPISLVSQT  256 (454)
Q Consensus       183 ~~~~c~-~~~c~~~~~Ygdgs~~~G~~~~Dtv~~~~~----~~~~~~~FG~~~~~~~~~~-~~~GilGLg~~~~sl~~q~  256 (454)
                       ...|. .+.|.|.+.|+||+.+.|.+++|+|+|++.    ..++++.|||++++.+.|. ..+||||||++++|+++|+
T Consensus       151 -~~~c~~~~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql  229 (431)
T PLN03146        151 -QASCSDENTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQL  229 (431)
T ss_pred             -CCCCCCCCCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHh
Confidence             23465 356999999999998899999999999873    2588999999999887664 5899999999999999999


Q ss_pred             hhhcCCcEEEecCCCC---CCCceEEeccCC---CCCeeeEecccCCCCCccEEEEEeEEEECcEEeeecccccc---CC
Q 012892          257 ATKYKKLFSYCLPSSA---SSTGHLTFGPGA---SKSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFT---TA  327 (454)
Q Consensus       257 ~~~~~~~FS~~L~~~~---~~~G~l~fGg~d---~~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~---~~  327 (454)
                      ....+++|||||.+..   ...|+|+||+..   ...+.|+|++.+. .+.+|+|+|++|+||+++++++...|.   .+
T Consensus       230 ~~~~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~-~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g  308 (431)
T PLN03146        230 GSSIGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKD-PDTFYYLTLEAISVGSKKLPYTGSSKNGVEEG  308 (431)
T ss_pred             hHhhCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCC-CCCeEEEeEEEEEECCEECcCCccccccCCCC
Confidence            8665679999997632   247999999953   2358999998642 257899999999999999988766542   25


Q ss_pred             CEEEcccccCccCCHhHHHHHHHHHHHhhhcCCCCCCCccccccccccCCcccccCeEEEEEcCCcEEEEcCCCcEEEeC
Q 012892          328 GTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASN  407 (454)
Q Consensus       328 ~~iiDSGT~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~  407 (454)
                      ++||||||++++||+++|++|+++|.+++...........++.||+...  ...+|+|+|+| +|+++.|++++|+++..
T Consensus       309 ~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~--~~~~P~i~~~F-~Ga~~~l~~~~~~~~~~  385 (431)
T PLN03146        309 NIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTS--DIKLPIITAHF-TGADVKLQPLNTFVKVS  385 (431)
T ss_pred             cEEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCC--CCCCCeEEEEE-CCCeeecCcceeEEEcC
Confidence            7999999999999999999999999998864333333345778998542  25689999999 58999999999999877


Q ss_pred             CCeEEEEEEeCCCCCCceeechhhhceeEEEEECCCCEEEEEeCCCC
Q 012892          408 ISQVCLAFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGGCS  454 (454)
Q Consensus       408 ~~~~C~~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rigfa~~~C~  454 (454)
                      .+..|+++.+.   .+.+|||+.|||++||+||++++|||||+++|+
T Consensus       386 ~~~~Cl~~~~~---~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~  429 (431)
T PLN03146        386 EDLVCFAMIPT---SSIAIFGNLAQMNFLVGYDLESKTVSFKPTDCT  429 (431)
T ss_pred             CCcEEEEEecC---CCceEECeeeEeeEEEEEECCCCEEeeecCCcC
Confidence            77899998764   236999999999999999999999999999995

>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses) Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>COG3577 Predicted aspartyl protease [General function prediction only] Back     alignment and domain information
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query454
1t6e_X381 Crystal Structure Of The Triticum Aestivum Xylanase 2e-05
3hd8_A389 Crystal Structure Of The Triticum Aestivum Xylanase 3e-04
2b42_A381 Crystal Structure Of The Triticum Xylanse Inhibitor 4e-04
3aup_A403 Crystal Structure Of Basic 7s Globulin From Soybean 8e-04
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase Inhibitor I Length = 381 Back     alignment and structure 
Iteration: 1

 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 83/216 (38%), Gaps = 27/216 (12%)
Query: 250 ISLVSQTAT--KYKKLFSYCLPSSASSTGHLTFGPGA----SKSVQFTPLSSISGGSSFY 303
           ++L +Q A+  K    F  CLP+          GP      ++S+ +TPL +  GGS  +
Sbjct: 148 LALPAQVASAQKVANRFLLCLPTGGPGVAIFGGGPVPWPQFTQSMPYTPLVT-KGGSPAH 206
Query: 304 GLEMIGISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPLRTAF-----RQFMSK 358
            +    I VG  ++ +      T G ++ +      L PD Y PL  AF      Q  + 
Sbjct: 207 YISARSIVVGDTRVPVPEGALATGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANG 266
Query: 359 YPTAPALSLL---DTCYDF----SKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQV 411
            P A A+  +     CYD     +      +P + L   GG + ++     M        
Sbjct: 267 APVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQGTA 326
Query: 412 CLAF-------AGNSDPTDVSIFGNTQQHTLEVVYD 440
           C+AF       AG+     V I G  Q     + +D
Sbjct: 327 CVAFVEMKGVAAGDGRAPAV-ILGGAQMEDFVLDFD 361
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase Length = 389 Back     alignment and structure
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In Complex With Bacillus Subtilis Xylanase Length = 381 Back     alignment and structure
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean Length = 403 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query454
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 2e-90
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 3e-84
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 2e-76
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 1e-25
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 6e-24
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 3e-23
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 3e-23
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 9e-23
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 1e-22
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 2e-22
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 2e-21
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 2e-21
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 2e-20
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 6e-20
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 9e-20
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 1e-19
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 2e-19
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 2e-19
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 3e-19
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 3e-19
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 8e-19
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 1e-18
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 1e-18
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 7e-18
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 9e-18
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 2e-17
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 2e-17
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 6e-17
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 4e-16
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 4e-16
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 4e-15
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 5e-14
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 1e-07
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 3e-06
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
 Score =  279 bits (714), Expect = 2e-90
 Identities = 76/376 (20%), Positives = 126/376 (33%), Gaps = 40/376 (10%)

Query: 111 GNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCS 170
           G +   +   TP   + ++ D   +  W  CE         + P    T     +   C 
Sbjct: 21  GLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYS-SKTYQAPFCHSTQCSRANTHQCL 79

Query: 171 STICTSLQSATGNSPACASSTC-LYGIQYGDSSFSIGFFGKETLTL----------TPRD 219
           S    S        P C  +TC L           +G  G++ L +           P  
Sbjct: 80  SCPAAS-------RPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLV 132

Query: 220 VFPNFLFGCGQN---NRGLFGGAAGLMGLGRDPISLVSQTATKY--KKLFSYCLPSSASS 274
             P FLF C  +    +GL     G+ GLG  PISL +Q A+ +  ++ F+ CL    +S
Sbjct: 133 TVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPTS 192

Query: 275 TGHLTFGPGASKSVQFTPLSSISG---------GSSFYGLEMIGISVGGQKLSIAASVF- 324
            G + FG   +   QF                     Y + +  I +    +     +  
Sbjct: 193 KGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRINQHSVFPLNKISS 252

Query: 325 -----TTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYST 379
                T+ GT+I + T    L    Y      F Q + K     +++    C++ +K + 
Sbjct: 253 TIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLCFNSNKINA 312

Query: 380 VTLPQISLFFSGGVEVSVDKTGIMYASNISQVCLAFA-GNSDPTDVSIFGNTQQHTLEVV 438
                + +    G    +    +M  +     CL    G   P      G  Q     VV
Sbjct: 313 YPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGGMQPRAEITLGARQLEENLVV 372

Query: 439 YDVAGGKVGFAAGGCS 454
           +D+A  +VGF+     
Sbjct: 373 FDLARSRVGFSTSSLH 388
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query454
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 100.0
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.89
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 99.68
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 92.56
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 92.15
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 90.64
1fmb_A104 EIAV protease; hydrolase (acid proteinase), RNA-di 82.69
2hs1_A99 HIV-1 protease; ultra-high resolution active site 81.81
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=100.00  E-value=1.8e-63  Score=506.33  Aligned_cols=341  Identities=24%  Similarity=0.426  Sum_probs=283.6

Q ss_pred             CCcceeccccCCccCcccEEEEEEeCCCCceEEEEEECCCceeeEeCCCccccccCCCCCCCCCCCCCccceecCCCccc
Q 012892           95 SDDATLPAKDGSVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTIC  174 (454)
Q Consensus        95 ~~~~~~p~~~~~~~~~~~Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~~~C~~~~~~~f~ps~SsT~~~~~C~~~~C  174 (454)
                      .+.+.+|++.+  ..+++|+++|+||||||++.|++||||+++||+|++|              .+|+||+.++|.++.|
T Consensus         6 ~~~~~~pv~~d--~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c--------------~~Sst~~~v~C~s~~C   69 (413)
T 3vla_A            6 PSALVVPVKKD--ASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN--------------YVSSTYRPVRCRTSQC   69 (413)
T ss_dssp             CSEEEEEEEEC--TTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS--------------CCCTTCEECBTTSHHH
T ss_pred             CccEEEEeeec--CCCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC--------------CCCCCcCccCCCcccc
Confidence            45678999865  5689999999999999999999999999999999865              3799999999999999


Q ss_pred             cccccCCC------CCCCCCCCCceeeeEe-CCCCeEEEeEEEEEEEeCC--------CccccceeeeeeecC--CCCCC
Q 012892          175 TSLQSATG------NSPACASSTCLYGIQY-GDSSFSIGFFGKETLTLTP--------RDVFPNFLFGCGQNN--RGLFG  237 (454)
Q Consensus       175 ~~~~~~~~------~~~~c~~~~c~~~~~Y-gdgs~~~G~~~~Dtv~~~~--------~~~~~~~~FG~~~~~--~~~~~  237 (454)
                      .....+..      ..+.|.++.|.|.+.| +|++.+.|++++|+|+|++        ...++++.|||++.+  .+.+.
T Consensus        70 ~~~~~~~~~~c~s~~~~~c~~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~~~  149 (413)
T 3vla_A           70 SLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLAS  149 (413)
T ss_dssp             HHTTCCEEECCSSCCBTTBCSSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTSCT
T ss_pred             cccccCCCcccccCCCCCCCCCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCccc
Confidence            87654311      1235666789999999 5888899999999999972        147889999999986  45566


Q ss_pred             CcceeeecCCCCCccceehhhhc--CCcEEEecCCCCCCCceEEeccCCC---------CC-eeeEecccCCCC------
Q 012892          238 GAAGLMGLGRDPISLVSQTATKY--KKLFSYCLPSSASSTGHLTFGPGAS---------KS-VQFTPLSSISGG------  299 (454)
Q Consensus       238 ~~~GilGLg~~~~sl~~q~~~~~--~~~FS~~L~~~~~~~G~l~fGg~d~---------~~-~~~~pl~~~~~~------  299 (454)
                      ..+||||||++++|+++|+..+.  +++|||||.+.....|+|+||+.+.         ++ +.|+||+.++..      
T Consensus       150 ~~dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~  229 (413)
T 3vla_A          150 GVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATST  229 (413)
T ss_dssp             TCCEEEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCC
T ss_pred             ccccccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCcccccccc
Confidence            79999999999999999998753  5899999998655689999999763         45 999999986432      


Q ss_pred             ----CccEEEEEeEEEECcEEeeecccccc-----CCCEEEcccccCccCCHhHHHHHHHHHHHhhh--cCCCCCCCccc
Q 012892          300 ----SSFYGLEMIGISVGGQKLSIAASVFT-----TAGTIIDSGTVITRLPPDAYTPLRTAFRQFMS--KYPTAPALSLL  368 (454)
Q Consensus       300 ----~~~y~v~l~~i~vg~~~~~~~~~~~~-----~~~~iiDSGT~~~~lp~~~~~~l~~~l~~~~~--~~~~~~~~~~~  368 (454)
                          ..+|+|+|++|+||++.+.+++..|.     .+++||||||++++||+++|++|.++|.+++.  .++...+...+
T Consensus       230 ~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~  309 (413)
T 3vla_A          230 QGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPF  309 (413)
T ss_dssp             TTCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCCTTC
T ss_pred             ccCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCCCCC
Confidence                27999999999999999988866553     25799999999999999999999999999875  33333334457


Q ss_pred             cccccccCCcc----cccCeEEEEEcC-CcEEEEcCCCcEEEeCCCeEEEEEEeCCC-CCCceeechhhhceeEEEEECC
Q 012892          369 DTCYDFSKYST----VTLPQISLFFSG-GVEVSVDKTGIMYASNISQVCLAFAGNSD-PTDVSIFGNTQQHTLEVVYDVA  442 (454)
Q Consensus       369 ~~Cy~~~~~~~----~~~P~i~~~f~g-g~~~~l~~~~~~~~~~~~~~C~~~~~~~~-~~~~~IlG~~fl~~~~vvfD~~  442 (454)
                      +.||+.++...    ..+|+|+|+|+| +++++|++++|+++.+.+..|++|...+. ..+.||||+.|||++|+|||++
T Consensus       310 ~~C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~IlGd~fl~~~~vvfD~~  389 (413)
T 3vla_A          310 GACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLA  389 (413)
T ss_dssp             SCEEECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEEETTEEEECEEEEESSCSSSEEECHHHHTTEEEEEETT
T ss_pred             cceeccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEeCCCcEEEEEEecCCCcccceeEehhhhcCeEEEEECC
Confidence            78999875432    479999999965 48999999999998766789998887532 2358999999999999999999


Q ss_pred             CCEEEEEeC
Q 012892          443 GGKVGFAAG  451 (454)
Q Consensus       443 ~~rigfa~~  451 (454)
                      ++|||||++
T Consensus       390 ~~riGfa~~  398 (413)
T 3vla_A          390 TSRVGFSGT  398 (413)
T ss_dssp             TTEEEEEEE
T ss_pred             CCEEEEEEe
Confidence            999999984
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A* Back     alignment and structure
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 454
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 2e-52
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 2e-35
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 7e-34
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 1e-33
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 2e-32
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 2e-32
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 2e-32
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 6e-32
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 7e-32
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 2e-31
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 2e-29
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 3e-29
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 3e-29
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 5e-29
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 5e-29
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 1e-28
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 2e-28
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 3e-28
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 9e-28
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 2e-27
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 3e-23
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 4e-22
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  178 bits (452), Expect = 2e-52
 Identities = 69/372 (18%), Positives = 118/372 (31%), Gaps = 48/372 (12%)

Query: 111 GNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCS 170
             Y +    G       L+ D    L W+ C+   +   E         ++ +Y    C 
Sbjct: 14  SLYTIPFHDGAS-----LVLDVAGPLVWSTCDGG-QPPAEIPCSSPTCLLANAYPAPGCP 67

Query: 171 STICTSLQSATGNSPACASSTCLYGIQYGDSSFSIGFFGKETLTL-------TPRDVFPN 223
           +  C         S         Y       + + G                    V   
Sbjct: 68  APSC--------GSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVG 119

Query: 224 FLFGCGQNN--RGLFGGAAGLMGLGRDPISLVSQTATKYKKLFSYCLPSSASSTGHLTFG 281
            L  C  +     L  G+ G+ GL    ++L +Q A+  K    + L       G   FG
Sbjct: 120 VLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAIFG 179

Query: 282 PGA------SKSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGT 335
            G       ++S+ +TPL +  GGS  + +    I VG  ++ +      T G ++ +  
Sbjct: 180 GGPVPWPQFTQSMPYTPLVTK-GGSPAHYISARSIVVGDTRVPVPEGALATGGVMLSTRL 238

Query: 336 VITRLPPDAYTPLRTAFRQFMSKYP--------TAPALSLLDTCYDFSKY----STVTLP 383
               L PD Y PL  AF + ++              A++    CYD            +P
Sbjct: 239 PYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVP 298

Query: 384 QISLFFSGGVEVSVDKTGIMYASNISQVCLAFA------GNSDPTDVSIFGNTQQHTLEV 437
            + L   GG + ++     M        C+AF                I G  Q     +
Sbjct: 299 NVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVL 358

Query: 438 VYDVAGGKVGFA 449
            +D+   ++GF+
Sbjct: 359 DFDMEKKRLGFS 370
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query454
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.3e-56  Score=448.62  Aligned_cols=340  Identities=23%  Similarity=0.378  Sum_probs=262.0

Q ss_pred             CHHHHHHhhHHHHHHHHhhhccCCCCCccccCCCcceeccccCCccCcccEEEEEEeCCCCceEEEEEECCCceeeEeCC
Q 012892           63 SHAEILRQDQSRVKSIHSRLSKNSGSLDEIRQSDDATLPAKDGSVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCE  142 (454)
Q Consensus        63 ~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~  142 (454)
                      ++++.+++...+.++++.|...................|+.   ++.+.+|+++|+||||||++.|++||||+++||+|+
T Consensus        11 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---n~~d~~Y~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~~   87 (370)
T d3psga_          11 SLRQNLIKDGKLKDFLKTHKHNPASKYFPEAAALIGDEPLE---NYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSV   87 (370)
T ss_dssp             CHHHHHHHTTCHHHHHHHCCCCGGGGTCTTSCCSSCCCTTG---GGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBT
T ss_pred             cHHHHHHHcCcHHHHHHhcccchhhhhcccccCcccccccc---cccCCEEEEEEEEcCCCeEEEEEEeCCCCCeEEECc
Confidence            56777777776666665542211110000112223345665   345689999999999999999999999999999999


Q ss_pred             CccccccCCCCCCCCCCCCCccceecCCCccccccccCCCCCCCCCCCCceeeeEeCCCCeEEEeEEEEEEEeCCCcccc
Q 012892          143 PCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFP  222 (454)
Q Consensus       143 ~C~~~C~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~~~~~~~~c~~~~c~~~~~Ygdgs~~~G~~~~Dtv~~~~~~~~~  222 (454)
                      +|.. |..+..+.|||++|+||+...                       |.|.+.|++|+ +.|.+++|++.+++ ..++
T Consensus        88 ~C~~-~~~~~~~~yd~~~Sst~~~~~-----------------------~~~~~~Yg~Gs-~~G~~~~d~~~~~~-~~~~  141 (370)
T d3psga_          88 YCSS-LACSDHNQFNPDDSSTFEATS-----------------------QELSITYGTGS-MTGILGYDTVQVGG-ISDT  141 (370)
T ss_dssp             TCCS-GGGTTSCCBCGGGCTTCEEEE-----------------------EEEEEESSSCE-EEEEEEEEEEEETT-EEEE
T ss_pred             cCCC-cccccccccCCCcccccccCC-----------------------CcEEEEeCCce-EEEEEEEEEEeeec-eeee
Confidence            9965 777777999999999999875                       69999999996 78999999999998 6899


Q ss_pred             ceeeeeeecCCCCC---CCcceeeecCCCCCc------cceehhhh---cCCcEEEecCCCCCCCceEEeccCCC----C
Q 012892          223 NFLFGCGQNNRGLF---GGAAGLMGLGRDPIS------LVSQTATK---YKKLFSYCLPSSASSTGHLTFGPGAS----K  286 (454)
Q Consensus       223 ~~~FG~~~~~~~~~---~~~~GilGLg~~~~s------l~~q~~~~---~~~~FS~~L~~~~~~~G~l~fGg~d~----~  286 (454)
                      ++.|||+....+.+   ...+||+|||+...+      +..++...   ..+.||+|+.+.....|.|+|||+|+    +
T Consensus       142 ~~~f~~~~~~~~~~~~~~~~~Gi~gl~~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~~~g~l~~Gg~d~~~~~~  221 (370)
T d3psga_         142 NQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTG  221 (370)
T ss_dssp             EEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSS
T ss_pred             eeEEEEEeeccCceecccccccccccccCcccccCCCchhhhhhhhcccccceeEEEeecCCCCCceEecCCcCchhccc
Confidence            99999999887632   367999999987654      22222222   16899999998776789999999874    6


Q ss_pred             CeeeEecccCCCCCccEEEEEeEEEECcEEeeeccccccCCCEEEcccccCccCCHhHHHHHHHHHHHhhhcCCCCCCCc
Q 012892          287 SVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALS  366 (454)
Q Consensus       287 ~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~iiDSGT~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~  366 (454)
                      ++.|+|+..    ..+|.|.++++.++++.+.....    ..+||||||++++||++++++|++++.+...    .. ..
T Consensus       222 ~l~~~p~~~----~~~w~v~~~~i~v~g~~~~~~~~----~~aiiDSGTs~~~lp~~~~~~i~~~l~~~~~----~~-~~  288 (370)
T d3psga_         222 SLNWVPVSV----EGYWQITLDSITMDGETIACSGG----CQAIVDTGTSLLTGPTSAIANIQSDIGASEN----SD-GE  288 (370)
T ss_dssp             CCEEEECSE----ETTEEEEECEEESSSSEEECTTC----EEEEECTTCCSEEEEHHHHHHHHHHTTCEEC----TT-CC
T ss_pred             ceeEEeecc----cceEEEEEeeEEeCCeEEecCCC----ccEEEecCCceEeCCHHHHHHHHHHhCCeee----cC-Cc
Confidence            899999987    68999999999999988765433    3599999999999999999999999876521    11 11


Q ss_pred             cccccccccCCcccccCeEEEEEcCCcEEEEcCCCcEEEeCCCeEEE-EEEeCC---CCCCceeechhhhceeEEEEECC
Q 012892          367 LLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQVCL-AFAGNS---DPTDVSIFGNTQQHTLEVVYDVA  442 (454)
Q Consensus       367 ~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~C~-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~  442 (454)
                      ....|+     ....+|+|+|+| ||+++.|++++|+++.+  ..|. ++...+   ..++.||||++|||++|+|||++
T Consensus       289 ~~~~C~-----~~~~~P~l~f~f-~g~~~~l~~~~yi~~~~--~~c~~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~  360 (370)
T d3psga_         289 MVISCS-----SIDSLPDIVFTI-DGVQYPLSPSAYILQDD--DSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRA  360 (370)
T ss_dssp             EECCGG-----GGGGCCCEEEEE-TTEEEEECHHHHEEECS--SCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETT
T ss_pred             EEEecc-----ccCCCceEEEEE-CCEEEEEChHHeEEEcC--CeEEEEEEEcccCCCCCCcEEECHHhhcCEEEEEECC
Confidence            222354     445789999999 89999999999998753  4465 454321   23567999999999999999999


Q ss_pred             CCEEEEEeCC
Q 012892          443 GGKVGFAAGG  452 (454)
Q Consensus       443 ~~rigfa~~~  452 (454)
                      ++||||||+.
T Consensus       361 ~~~IGfAp~a  370 (370)
T d3psga_         361 NNKVGLAPVA  370 (370)
T ss_dssp             TTEEEEEEBC
T ss_pred             CCEEEEEecC
Confidence            9999999973
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure