Citrus Sinensis ID: 012908
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 453 | ||||||
| 255536871 | 589 | conserved hypothetical protein [Ricinus | 0.986 | 0.758 | 0.800 | 0.0 | |
| 147853498 | 591 | hypothetical protein VITISV_016786 [Viti | 0.986 | 0.756 | 0.768 | 0.0 | |
| 225451469 | 591 | PREDICTED: uncharacterized protein LOC10 | 0.986 | 0.756 | 0.768 | 0.0 | |
| 225451471 | 591 | PREDICTED: uncharacterized protein LOC10 | 0.986 | 0.756 | 0.755 | 0.0 | |
| 356570169 | 587 | PREDICTED: uncharacterized protein LOC10 | 0.993 | 0.766 | 0.720 | 0.0 | |
| 356558702 | 587 | PREDICTED: uncharacterized protein LOC10 | 0.993 | 0.766 | 0.710 | 0.0 | |
| 312282435 | 579 | unnamed protein product [Thellungiella h | 0.980 | 0.766 | 0.748 | 0.0 | |
| 449441700 | 576 | PREDICTED: uncharacterized protein LOC10 | 0.993 | 0.781 | 0.710 | 0.0 | |
| 297807437 | 579 | nodulin family protein [Arabidopsis lyra | 0.980 | 0.766 | 0.737 | 0.0 | |
| 18395988 | 584 | major facilitator protein [Arabidopsis t | 0.986 | 0.765 | 0.740 | 0.0 |
| >gi|255536871|ref|XP_002509502.1| conserved hypothetical protein [Ricinus communis] gi|223549401|gb|EEF50889.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/477 (80%), Positives = 414/477 (86%), Gaps = 30/477 (6%)
Query: 3 MCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPD 62
MCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGL GAILTQ+YTMIH+P+
Sbjct: 113 MCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYTMIHSPN 172
Query: 63 HANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLV 122
HA+LIFMVAVGPAMVV+ LMFIIRPVGGHRQVRPSD +SFTF+YSVCLLLAAYLMGVML+
Sbjct: 173 HASLIFMVAVGPAMVVVTLMFIIRPVGGHRQVRPSDGTSFTFVYSVCLLLAAYLMGVMLL 232
Query: 123 EDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQ 182
EDLVDL+HT+II+FTV+LFVLL +PIVIPI LSFF E DPAEE LL + E E GKS Q
Sbjct: 233 EDLVDLSHTLIIVFTVVLFVLLLLPIVIPIWLSFFHEPRDPAEETLLPESEKQEAGKSEQ 292
Query: 183 ETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDF 242
+ EVILSEVEDEKPK+VDLLPASER+KRIAQLQ +LF AAAEGAVR+KRRRGPHRGEDF
Sbjct: 293 DGHEVILSEVEDEKPKEVDLLPASERKKRIAQLQTKLFQAAAEGAVRIKRRRGPHRGEDF 352
Query: 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRV 302
TL QALIKADFWLIF SLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRV
Sbjct: 353 TLMQALIKADFWLIFVSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRV 412
Query: 303 GGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAI 362
GGGYFSEIIVRDYAYPRP+AMAVAQFVMAIGH+F WPG MY+GTLLIGLGYGAHWAI
Sbjct: 413 GGGYFSEIIVRDYAYPRPIAMAVAQFVMAIGHVFFAFDWPGTMYIGTLLIGLGYGAHWAI 472
Query: 363 VPAAASELFGLKKFGALYNFLTLANP------------------------------AGSI 392
VPAAASELFGLKKFGALYNFLTLANP AGS+
Sbjct: 473 VPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASRIYDREAERQAHEHHMRTAGSL 532
Query: 393 FTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRS 449
F+ + DEPLKCEG++CYFLTSMIMSG CI+AVILS+ILVHRT VY++LYGKSR+
Sbjct: 533 FSGLFGPDEPLKCEGAVCYFLTSMIMSGFCIIAVILSLILVHRTKIVYANLYGKSRT 589
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147853498|emb|CAN82292.1| hypothetical protein VITISV_016786 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/479 (76%), Positives = 405/479 (84%), Gaps = 32/479 (6%)
Query: 3 MCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPD 62
+CILIFVG NGETYFNT LVSCVQNFPKSRGPVVGILKGFAGL GAILTQ+YTMIH+PD
Sbjct: 113 ICILIFVGTNGETYFNTVDLVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYTMIHSPD 172
Query: 63 HANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLV 122
HA+L+FMVAVGP MVV ALMFI+RPVGGHRQVRP+D SFTFIY VCLLLAAYLMGVMLV
Sbjct: 173 HASLVFMVAVGPIMVVFALMFIVRPVGGHRQVRPTDDLSFTFIYGVCLLLAAYLMGVMLV 232
Query: 123 EDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQ 182
+DLV L+HTV+ IFT ILFVL+ PIVIP+ LSFF E P EALL++P+ EPGKS Q
Sbjct: 233 QDLVHLSHTVVTIFTAILFVLILAPIVIPVSLSFFSEPKAPEAEALLTEPQKDEPGKSEQ 292
Query: 183 ETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDF 242
+ EVI SEVEDEKPK+VDLLPASER+KRIA LQA+LF AAAEGAVRVKRRRGPHRGEDF
Sbjct: 293 DATEVIFSEVEDEKPKEVDLLPASERQKRIAHLQAKLFQAAAEGAVRVKRRRGPHRGEDF 352
Query: 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRV 302
TL QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGY NTHIFVSMISIWNFLGR+
Sbjct: 353 TLMQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYHNTHIFVSMISIWNFLGRI 412
Query: 303 GGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAI 362
GGGYFSE+IVRD+AYPRPVAMA AQ +MA+GH+F MGWPGAM++GTLLIGLGYGAHWAI
Sbjct: 413 GGGYFSEMIVRDHAYPRPVAMAAAQVIMALGHLFFAMGWPGAMHIGTLLIGLGYGAHWAI 472
Query: 363 VPAAASELFGLKKFGALYNFLTLANPA--------------------------------G 390
VPAAASELFGLK FGALYNFLTLANPA G
Sbjct: 473 VPAAASELFGLKNFGALYNFLTLANPAGSLVFSGVIASSIYDREAEKQAHHHHHLQQNVG 532
Query: 391 SIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRS 449
SIF+ M +D+P KCEGSIC+FLTSMIMSGLCI+AV+LSM+LVHRT VY++LYGKSR+
Sbjct: 533 SIFSGMLSMDDPPKCEGSICFFLTSMIMSGLCIIAVVLSMVLVHRTKIVYANLYGKSRT 591
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225451469|ref|XP_002270737.1| PREDICTED: uncharacterized protein LOC100244537 [Vitis vinifera] gi|296082334|emb|CBI21339.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/479 (76%), Positives = 405/479 (84%), Gaps = 32/479 (6%)
Query: 3 MCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPD 62
+CILIFVG NGETYFNT LVSCVQNFPKSRGPVVGILKGFAGL GAILTQ+YTMIH+PD
Sbjct: 113 ICILIFVGTNGETYFNTVDLVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYTMIHSPD 172
Query: 63 HANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLV 122
HA+L+FMVAVGP MVV ALMFI+RPVGGHRQVRP+D SFTFIY VCLLLAAYLMGVMLV
Sbjct: 173 HASLVFMVAVGPIMVVFALMFIVRPVGGHRQVRPTDDLSFTFIYGVCLLLAAYLMGVMLV 232
Query: 123 EDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQ 182
+DLV L+HTV+ IFT ILFVL+ PIVIP+ LSFF E P EALL++P+ EPGKS Q
Sbjct: 233 QDLVHLSHTVVTIFTAILFVLILAPIVIPVSLSFFSEPKAPEAEALLTEPQKDEPGKSEQ 292
Query: 183 ETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDF 242
+ EVI SEVEDEKPK+VDLLPASER+KRIA LQA+LF AAAEGAVRVKRRRGPHRGEDF
Sbjct: 293 DATEVIFSEVEDEKPKEVDLLPASERQKRIAHLQAKLFQAAAEGAVRVKRRRGPHRGEDF 352
Query: 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRV 302
TL QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGY NTHIFVSMISIWNFLGR+
Sbjct: 353 TLMQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYHNTHIFVSMISIWNFLGRI 412
Query: 303 GGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAI 362
GGGYFSE+IVRD+AYPRPVAMA AQ +MA+GH+F MGWPGAM++GTLLIGLGYGAHWAI
Sbjct: 413 GGGYFSEMIVRDHAYPRPVAMAAAQVIMALGHLFFAMGWPGAMHIGTLLIGLGYGAHWAI 472
Query: 363 VPAAASELFGLKKFGALYNFLTLANPA--------------------------------G 390
VPAAASELFGLK FGALYNFLTLANPA G
Sbjct: 473 VPAAASELFGLKNFGALYNFLTLANPAGSLVFSGVIASSIYDREAEKQAHHHHHLQQNVG 532
Query: 391 SIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRS 449
SIF+ M +D+P KCEGSIC+FLTSMIMSGLCI+AV+LSM+LVHRT VY++LYGKSR+
Sbjct: 533 SIFSGMLSMDDPPKCEGSICFFLTSMIMSGLCIIAVVLSMVLVHRTKIVYANLYGKSRT 591
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225451471|ref|XP_002270809.1| PREDICTED: uncharacterized protein LOC100266857 [Vitis vinifera] gi|296082332|emb|CBI21337.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/479 (75%), Positives = 404/479 (84%), Gaps = 32/479 (6%)
Query: 3 MCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPD 62
+CILIFVG NGETYFNT LVSCVQNFPKSRGPVVGILKGF+GL GAILTQ+YTMIH+PD
Sbjct: 113 ICILIFVGTNGETYFNTVDLVSCVQNFPKSRGPVVGILKGFSGLSGAILTQIYTMIHSPD 172
Query: 63 HANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLV 122
HA+L+FMVAVGP MVV ALMFI+RPVGGHRQVRP+D SFTFIY VCL+LAAYLMGVML+
Sbjct: 173 HASLVFMVAVGPTMVVFALMFIVRPVGGHRQVRPTDDLSFTFIYGVCLVLAAYLMGVMLL 232
Query: 123 EDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQ 182
+DLVDL+HTV+ IFT ILFVL+ +PIVIP+ LSF E P EALL++P+ EPGKS Q
Sbjct: 233 QDLVDLSHTVVTIFTAILFVLVLVPIVIPVSLSFPSEPKAPELEALLTEPQKEEPGKSEQ 292
Query: 183 ETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDF 242
+ EVI SE+EDEKPK+VDLLPASER+KRIA LQA+LF AAAEGAVRVKRRRGP RGEDF
Sbjct: 293 DATEVIFSELEDEKPKEVDLLPASERQKRIAHLQAKLFQAAAEGAVRVKRRRGPRRGEDF 352
Query: 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRV 302
TL QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGR+
Sbjct: 353 TLMQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRI 412
Query: 303 GGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAI 362
GGGYFSE+IVRDYAYPRPVAMAVAQ MA+GH+F MGWPG++Y+GTLLIGLGYGAHWAI
Sbjct: 413 GGGYFSEMIVRDYAYPRPVAMAVAQVTMALGHLFFAMGWPGSLYIGTLLIGLGYGAHWAI 472
Query: 363 VPAAASELFGLKKFGALYNFLTLANPA--------------------------------G 390
VPAAASELFGLK FGALYNF+ LANP G
Sbjct: 473 VPAAASELFGLKNFGALYNFINLANPTGSLVFSGVIASSIYDREAEKQAHHHHHQQQNMG 532
Query: 391 SIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRS 449
SIF+ M VD+P KCEGSIC+FLTSMIMSG+CI+AV+LSM+LVHRT VY++LYGKSR+
Sbjct: 533 SIFSGMLSVDDPPKCEGSICFFLTSMIMSGICIIAVVLSMVLVHRTKVVYANLYGKSRT 591
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356570169|ref|XP_003553263.1| PREDICTED: uncharacterized protein LOC100796700 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/473 (72%), Positives = 395/473 (83%), Gaps = 23/473 (4%)
Query: 3 MCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPD 62
MC LIFVG NGETYFNT +LVSCVQNFPKSRGPVVGILKGFAGL GAILTQ+Y + HAP+
Sbjct: 113 MCALIFVGTNGETYFNTVSLVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYALFHAPN 172
Query: 63 HANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLV 122
A+LIFMVAVGP++V I LMFI+RPVGGH+QVRPSD FT IY VCLLLAAYL+GVM+V
Sbjct: 173 QASLIFMVAVGPSLVGIGLMFIVRPVGGHKQVRPSDGKCFTLIYGVCLLLAAYLLGVMVV 232
Query: 123 EDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQ 182
+DLV+++ TVI IFT +L ++L +PIVIPI LSF E+ P EALL P+N E GKS
Sbjct: 233 QDLVEVSETVISIFTGVLLLILLVPIVIPITLSFGPEQRHPEVEALLPPPQNKEAGKSQL 292
Query: 183 ETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDF 242
++DEVILSE+EDEKPK+VD+LPASER+KRIA LQ RL AAAEGAVRVKRRRGPHRGEDF
Sbjct: 293 DSDEVILSELEDEKPKEVDMLPASERQKRIAHLQQRLLQAAAEGAVRVKRRRGPHRGEDF 352
Query: 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRV 302
TLTQALIKADFWL+F S+++GSGSGLTVIDNLGQMSQSLGYDN HIFVSMISIWNFLGRV
Sbjct: 353 TLTQALIKADFWLLFISMIMGSGSGLTVIDNLGQMSQSLGYDNAHIFVSMISIWNFLGRV 412
Query: 303 GGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAI 362
GGGY SE++VRD+AYPRPVA+AV Q +M +GH+FLGMGWPG+MYVGTLL+GLGYGAHWAI
Sbjct: 413 GGGYISELVVRDHAYPRPVALAVFQLIMTLGHVFLGMGWPGSMYVGTLLVGLGYGAHWAI 472
Query: 363 VPAAASELFGLKKFGALYNFLTLANPAGS-IFTS-------------------MPRV--- 399
VPA ASELFGL+ FGALYNF+T+ANPAG+ +F+S M RV
Sbjct: 473 VPATASELFGLRNFGALYNFITIANPAGTLVFSSLIASTIYDAEAEKQHRQNMMLRVLNA 532
Query: 400 DEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRSSNL 452
EPLKCEGS+C+FLTSMIM+GLC+V L M+LV RT VY++LYGK+ SS L
Sbjct: 533 SEPLKCEGSVCFFLTSMIMAGLCVVGAGLCMVLVLRTRIVYANLYGKASSSRL 585
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356558702|ref|XP_003547642.1| PREDICTED: uncharacterized protein LOC100818484 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/473 (71%), Positives = 394/473 (83%), Gaps = 23/473 (4%)
Query: 3 MCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPD 62
MC LIFVG NGETYFNT +LVSCVQNFPKSRGPVVGILKGFAGL GAILTQ+Y + H+P+
Sbjct: 113 MCALIFVGTNGETYFNTVSLVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYALFHSPN 172
Query: 63 HANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLV 122
A+LIFMVAVGP++V I LMFI+RPVGGH+QVRPSD FT IY VCLLLAAYL+GVM+V
Sbjct: 173 QASLIFMVAVGPSLVGIGLMFIVRPVGGHKQVRPSDGKCFTLIYGVCLLLAAYLLGVMVV 232
Query: 123 EDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQ 182
+DLV+++ TVI IFT +L ++L +PIVIPI L+F E+ P EEALL P+N E GKS
Sbjct: 233 QDLVEVSETVISIFTGVLLLILLVPIVIPITLTFGPEQRHPEEEALLPPPQNKEAGKSQL 292
Query: 183 ETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDF 242
++DEVILSE+EDEKPK+VD+LPASER+KRIA LQ RL AAAEGAVRVKRRRGPHRGEDF
Sbjct: 293 DSDEVILSELEDEKPKEVDMLPASERQKRIAHLQQRLLQAAAEGAVRVKRRRGPHRGEDF 352
Query: 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRV 302
TLTQALIKADFWL+F S+++GSGSGLTVIDNLGQMSQSLG+DN HIFVSMISIWNFLGRV
Sbjct: 353 TLTQALIKADFWLLFISMIMGSGSGLTVIDNLGQMSQSLGFDNAHIFVSMISIWNFLGRV 412
Query: 303 GGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAI 362
GGGY SE++VRD+AYPRPVA+AV Q +M +GH+FLGMGWPG+MYVGTLL+GLGYGAHWAI
Sbjct: 413 GGGYISELVVRDHAYPRPVALAVFQLIMTLGHVFLGMGWPGSMYVGTLLVGLGYGAHWAI 472
Query: 363 VPAAASELFGLKKFGALYNFLTLANPAGS-IFTSMP----------------------RV 399
VPA ASELFGL+ FGALYNF+T+ANPAG+ +F+S+
Sbjct: 473 VPATASELFGLRNFGALYNFITIANPAGTLVFSSLIASTIYDAEAEKQHRQNMILQVLNA 532
Query: 400 DEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRSSNL 452
EPLKCEGS+C+FLTSMIM+GLC+V L M+LV RT VY++LYGK+ SS L
Sbjct: 533 SEPLKCEGSVCFFLTSMIMAGLCVVGAGLCMVLVLRTRIVYANLYGKASSSRL 585
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|312282435|dbj|BAJ34083.1| unnamed protein product [Thellungiella halophila] | Back alignment and taxonomy information |
|---|
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/469 (74%), Positives = 397/469 (84%), Gaps = 25/469 (5%)
Query: 3 MCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPD 62
MCILIFVGNNGETYFNT +LVS V NFPKSRGPVVGILKGFAGLGGAIL+Q+YT +H+PD
Sbjct: 114 MCILIFVGNNGETYFNTGSLVSGVHNFPKSRGPVVGILKGFAGLGGAILSQIYTTMHSPD 173
Query: 63 HANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLV 122
A+LI MVAVGPA+VV LMF IRPVGGHRQ+RP+D +SFTFIY VC+LLAAYLM VML+
Sbjct: 174 PASLIVMVAVGPAVVVAFLMFFIRPVGGHRQIRPTDGASFTFIYGVCILLAAYLMAVMLI 233
Query: 123 EDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPA---EEALLSKPENMEPGK 179
EDLV ++H +I +FT++LFV+L +PI++PI+ SFF E PA EE L+ K EN EPG
Sbjct: 234 EDLVVVSHNIITVFTIVLFVILVVPILVPIMTSFFTESNAPADTVEEPLVPKRENQEPG- 292
Query: 180 SNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRG 239
Q+T ++ILSEVEDEKPK++DLLPASER KRIA LQARL AAAEGAVRVKR RGPHRG
Sbjct: 293 --QQTPDLILSEVEDEKPKEMDLLPASERHKRIAHLQARLMQAAAEGAVRVKRHRGPHRG 350
Query: 240 EDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFL 299
EDFTLTQAL+KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH+FVSMISIWNFL
Sbjct: 351 EDFTLTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVFVSMISIWNFL 410
Query: 300 GRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAH 359
GR+GGGYFSE+IVRDYAYPRPVAMAVAQ VM++GH+F GWPGAMY+GTLLIGLGYGAH
Sbjct: 411 GRIGGGYFSELIVRDYAYPRPVAMAVAQLVMSVGHVFFAFGWPGAMYIGTLLIGLGYGAH 470
Query: 360 WAIVPAAASELFGLKKFGALYNFLTLANPAGSI-------------------FTSMPRVD 400
WAIVPA ASELFGLKKFGALYNFLTLANPAGS+ S+ D
Sbjct: 471 WAIVPATASELFGLKKFGALYNFLTLANPAGSLVFSGLIASTIYDREAERQAHVSVFDPD 530
Query: 401 EPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRS 449
+ L+CEG ICYFLTS+IMSG CI+A ILSMILV RT +VYSHLYGK+R+
Sbjct: 531 DALRCEGYICYFLTSLIMSGFCIIACILSMILVRRTKSVYSHLYGKTRT 579
|
Source: Thellungiella halophila Species: Eutrema halophilum Genus: Eutrema Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441700|ref|XP_004138620.1| PREDICTED: uncharacterized protein LOC101211655 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/463 (71%), Positives = 376/463 (81%), Gaps = 13/463 (2%)
Query: 3 MCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPD 62
MC L+F+G NGETYFNT +LVSCVQNFPKSRGPVVGILKGFAGL GAILTQ Y + H+P+
Sbjct: 113 MCALVFIGTNGETYFNTVSLVSCVQNFPKSRGPVVGILKGFAGLSGAILTQTYAIFHSPE 172
Query: 63 HANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLV 122
ANLIFMVAVGPA+V I +MF IRPV GHRQVRPSD SFT +Y VCLLLAAYLMGVML+
Sbjct: 173 SANLIFMVAVGPALVAIGVMFFIRPVAGHRQVRPSDGMSFTSVYGVCLLLAAYLMGVMLI 232
Query: 123 EDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAE-EALLSKPENMEPGKSN 181
EDLV L+ VI IFTV++FV+L P IP+ L+ E T AE EALL E EP ++
Sbjct: 233 EDLVTLSPIVITIFTVVMFVILLTPFFIPVSLTLSSEATTYAEQEALLPPSEKEEPARTE 292
Query: 182 QETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGED 241
+ +EVI SEVEDEK + DLLPASER+KRIAQLQA+L AAAEGAVRVKRR+GP RGED
Sbjct: 293 PDGNEVIFSEVEDEKSEGEDLLPASERQKRIAQLQAKLLQAAAEGAVRVKRRKGPRRGED 352
Query: 242 FTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGR 301
FTL QALIKADFWLIF S LLGSG+GLTVIDNLGQMSQSLGYDNTHIFVS+ISIWNFLGR
Sbjct: 353 FTLGQALIKADFWLIFSSHLLGSGTGLTVIDNLGQMSQSLGYDNTHIFVSLISIWNFLGR 412
Query: 302 VGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWA 361
VGGGY SEI+VRD+AYPRP+AM +AQ +M GH+F+GMGWPGAMY+GTL+ GLGYGAHWA
Sbjct: 413 VGGGYLSEIVVRDFAYPRPIAMTIAQVLMIFGHVFIGMGWPGAMYIGTLITGLGYGAHWA 472
Query: 362 IVPAAASELFGLKKFGALYNFLTLANPAGS-IFTSM-----------PRVDEPLKCEGSI 409
IVPA ASELFGLKKFGALYNF+TL+ P GS +F+ + + P KCEG+I
Sbjct: 473 IVPATASELFGLKKFGALYNFITLSTPMGSLVFSGLIASSIYDSEAEKQAQGPHKCEGAI 532
Query: 410 CYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRSSNL 452
C+FLT MIM G C +A ILS+ILVHRT VY +LYGKSR+S L
Sbjct: 533 CFFLTCMIMGGFCAIAAILSLILVHRTKGVYHNLYGKSRTSTL 575
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297807437|ref|XP_002871602.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata] gi|297317439|gb|EFH47861.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/469 (73%), Positives = 398/469 (84%), Gaps = 25/469 (5%)
Query: 3 MCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPD 62
MC+LIFVGNNGETYFNT ALVS VQNFPKSRGPVVGILKGFAGLGGAI++Q+YTMIH+ +
Sbjct: 114 MCVLIFVGNNGETYFNTGALVSGVQNFPKSRGPVVGILKGFAGLGGAIISQIYTMIHSSN 173
Query: 63 HANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLV 122
A+LI MVAV PA+VV+ LMF IRPVGGH+Q+RPSD +SFTFIY VCLLLAAYLM VML+
Sbjct: 174 PASLILMVAVTPAVVVVCLMFFIRPVGGHKQIRPSDGASFTFIYGVCLLLAAYLMAVMLI 233
Query: 123 EDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPA---EEALLSKPENMEPGK 179
+DLV ++H VI +FT++LFV+L +PI++PI+ SFF E +P EE L+ K E+ EPG
Sbjct: 234 QDLVVVSHNVITMFTIVLFVILVVPILVPIMTSFFTETNEPDDTIEEPLVPKREDQEPG- 292
Query: 180 SNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRG 239
+T ++ILSEVEDEKPKDVDLLPASER KRIA LQA+L AAAEGAVRVKRRRGPHRG
Sbjct: 293 --MQTPDLILSEVEDEKPKDVDLLPASERHKRIAHLQAQLMQAAAEGAVRVKRRRGPHRG 350
Query: 240 EDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFL 299
EDFTLTQAL+KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH+ VSMISIWNFL
Sbjct: 351 EDFTLTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVLVSMISIWNFL 410
Query: 300 GRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAH 359
GR+GGGYFSE++VRDYAYPRPVAMAVAQ +M++GHIF GWPGAMY+GTLLIGLGYGAH
Sbjct: 411 GRIGGGYFSELVVRDYAYPRPVAMAVAQLIMSVGHIFFAYGWPGAMYIGTLLIGLGYGAH 470
Query: 360 WAIVPAAASELFGLKKFGALYNFLTLANPAGS-IFTSMPRV------------------D 400
WAIVPA ASELFGLKKFGALYNFLTLANPAGS +F+ M D
Sbjct: 471 WAIVPATASELFGLKKFGALYNFLTLANPAGSLVFSGMIASSIYDREAERQAHGSVFDPD 530
Query: 401 EPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRS 449
+ L+C GSIC+FLTS++MSG CI+A ILSMILV RT +VY+HLYGK+R+
Sbjct: 531 DALRCNGSICFFLTSLVMSGFCIIACILSMILVRRTKSVYTHLYGKTRT 579
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18395988|ref|NP_566157.1| major facilitator protein [Arabidopsis thaliana] gi|6091732|gb|AAF03444.1|AC010797_20 unknown protein [Arabidopsis thaliana] gi|6513938|gb|AAF14842.1|AC011664_24 unknown protein [Arabidopsis thaliana] gi|22136036|gb|AAM91600.1| unknown protein [Arabidopsis thaliana] gi|23197760|gb|AAN15407.1| unknown protein [Arabidopsis thaliana] gi|332640216|gb|AEE73737.1| major facilitator protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/471 (74%), Positives = 394/471 (83%), Gaps = 24/471 (5%)
Query: 3 MCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPD 62
MCILIFVGNNGETYFNTAALVS VQNFPKSRGPVVGILKGFAGLGGAIL+QVYTMIH+ D
Sbjct: 114 MCILIFVGNNGETYFNTAALVSGVQNFPKSRGPVVGILKGFAGLGGAILSQVYTMIHSSD 173
Query: 63 HANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLV 122
A+LIFMVAV P++VV+ LMF IRPVGGHRQ+R SD++SFT IY+VC+LLAAYLM VMLV
Sbjct: 174 RASLIFMVAVAPSVVVVPLMFFIRPVGGHRQIRSSDATSFTVIYAVCILLAAYLMAVMLV 233
Query: 123 EDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPA---EEALLSKPENMEPGK 179
ED +DL+H++II FTV+LF +L +PI IPI S F TDP EE LL + +PG+
Sbjct: 234 EDFIDLSHSIIIAFTVVLFAILLVPIFIPIATSCFTASTDPCDTLEEPLLGDQQGQDPGQ 293
Query: 180 SN--QETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPH 237
S E+I SEVEDEKPK+VDLLPA ER KRIAQLQA+L AAAEGAVRVKRRRGPH
Sbjct: 294 STTPDHGPELIFSEVEDEKPKEVDLLPAVERHKRIAQLQAKLMQAAAEGAVRVKRRRGPH 353
Query: 238 RGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWN 297
RGEDFTLTQAL+KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH+FVSMISIWN
Sbjct: 354 RGEDFTLTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVFVSMISIWN 413
Query: 298 FLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYG 357
FLGR+GGGYFSE+IVRDYAYPRPVA+AVAQ VM++GHIF GWPGAM++GTLLIGLGYG
Sbjct: 414 FLGRIGGGYFSELIVRDYAYPRPVAIAVAQLVMSVGHIFFAYGWPGAMHIGTLLIGLGYG 473
Query: 358 AHWAIVPAAASELFGLKKFGALYNFLTLANPAGS-IFT------------------SMPR 398
AHWAIVPA ASELFGLKKFGALYNFLTLANPAGS +F+ S+
Sbjct: 474 AHWAIVPATASELFGLKKFGALYNFLTLANPAGSLVFSGLIASSIYDREAERQAQGSLFN 533
Query: 399 VDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRS 449
D+ L+C GSICYFLTS+IMSG C++A LSMILV RT VY++LYGK+R+
Sbjct: 534 PDDVLRCRGSICYFLTSLIMSGFCLIAAALSMILVQRTKPVYTNLYGKTRN 584
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 453 | ||||||
| TAIR|locus:2078643 | 584 | AT3G01930 [Arabidopsis thalian | 0.867 | 0.672 | 0.728 | 1.1e-151 | |
| TAIR|locus:2174683 | 579 | AT5G14120 [Arabidopsis thalian | 0.863 | 0.675 | 0.716 | 4.2e-150 | |
| TAIR|locus:2159752 | 540 | AT5G50520 [Arabidopsis thalian | 0.366 | 0.307 | 0.568 | 2.6e-95 | |
| TAIR|locus:2832385 | 540 | AT5G50630 [Arabidopsis thalian | 0.366 | 0.307 | 0.568 | 2.6e-95 | |
| TAIR|locus:2059829 | 546 | AT2G16660 [Arabidopsis thalian | 0.532 | 0.441 | 0.346 | 2.3e-60 | |
| TAIR|locus:2116855 | 567 | AT4G34950 [Arabidopsis thalian | 0.494 | 0.395 | 0.330 | 3.3e-57 | |
| TAIR|locus:2040809 | 525 | AT2G34350 [Arabidopsis thalian | 0.454 | 0.392 | 0.336 | 1.1e-56 | |
| TAIR|locus:2027284 | 533 | AT1G74780 [Arabidopsis thalian | 0.456 | 0.388 | 0.339 | 1.8e-56 | |
| TAIR|locus:2046238 | 577 | AT2G28120 [Arabidopsis thalian | 0.452 | 0.355 | 0.355 | 4.6e-56 | |
| TAIR|locus:2056103 | 601 | AT2G39210 "AT2G39210" [Arabido | 0.344 | 0.259 | 0.411 | 6.4e-55 |
| TAIR|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1480 (526.0 bits), Expect = 1.1e-151, P = 1.1e-151
Identities = 290/398 (72%), Positives = 319/398 (80%)
Query: 3 MCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPD 62
MCILIFVGNNGETYFNTAALVS VQNFPKSRGPVVGILKGFAGLGGAIL+QVYTMIH+ D
Sbjct: 114 MCILIFVGNNGETYFNTAALVSGVQNFPKSRGPVVGILKGFAGLGGAILSQVYTMIHSSD 173
Query: 63 HANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLV 122
A+LIFMVAV P++VV+ LMF IRPVGGHRQ+R SD++SFT IY+VC+LLAAYLM VMLV
Sbjct: 174 RASLIFMVAVAPSVVVVPLMFFIRPVGGHRQIRSSDATSFTVIYAVCILLAAYLMAVMLV 233
Query: 123 EDLVDLNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXERTDPA---EEALLSKPENMEPGK 179
ED +DL+H TDP EE LL + +PG+
Sbjct: 234 EDFIDLSHSIIIAFTVVLFAILLVPIFIPIATSCFTASTDPCDTLEEPLLGDQQGQDPGQ 293
Query: 180 SN--QETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPH 237
S E+I SEVEDEKPK+VDLLPA ER KRIAQLQA+L AAAEGAVRVKRRRGPH
Sbjct: 294 STTPDHGPELIFSEVEDEKPKEVDLLPAVERHKRIAQLQAKLMQAAAEGAVRVKRRRGPH 353
Query: 238 RGEDFTLTQALIKADFWLIFFXXXXXXXXXXTVIDNLGQMSQSLGYDNTHIFVSMISIWN 297
RGEDFTLTQAL+KADFWLIFF TVIDNLGQMSQSLGYDNTH+FVSMISIWN
Sbjct: 354 RGEDFTLTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVFVSMISIWN 413
Query: 298 FLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYG 357
FLGR+GGGYFSE+IVRDYAYPRPVA+AVAQ VM++GHIF GWPGAM++GTLLIGLGYG
Sbjct: 414 FLGRIGGGYFSELIVRDYAYPRPVAIAVAQLVMSVGHIFFAYGWPGAMHIGTLLIGLGYG 473
Query: 358 AHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTS 395
AHWAIVPA ASELFGLKKFGALYNFLTLANPAGS+ S
Sbjct: 474 AHWAIVPATASELFGLKKFGALYNFLTLANPAGSLVFS 511
|
|
| TAIR|locus:2174683 AT5G14120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1465 (520.8 bits), Expect = 4.2e-150, P = 4.2e-150
Identities = 285/398 (71%), Positives = 320/398 (80%)
Query: 3 MCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPD 62
MC+LIFVGNNGETYFNT ALVS VQNFPKSRGPVVGILKGFAGLGGAI++Q+YTMIH+ +
Sbjct: 114 MCVLIFVGNNGETYFNTGALVSGVQNFPKSRGPVVGILKGFAGLGGAIISQIYTMIHSSN 173
Query: 63 HANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLV 122
A+LI MVAV PA+VV+ LMF IRPVGGH+Q+RP+D +SFTFIY VCLLLAAYLM VML+
Sbjct: 174 PASLILMVAVTPAVVVVCLMFFIRPVGGHKQIRPTDGASFTFIYGVCLLLAAYLMSVMLI 233
Query: 123 EDLVDLNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXERTDP---AEEALLSKPENMEPGK 179
+DLV ++H E +P EE L+ K E+ EPG
Sbjct: 234 QDLVVVSHNVITVFTIVLFVILVVPILVPIMTSFFTETNEPDDTIEEPLVPKREDQEPGL 293
Query: 180 SNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRG 239
+T ++ILSEVEDEKPKDVDLLPASER KRIA LQA+L AAAEGAVRV RRRGPHRG
Sbjct: 294 ---QTPDLILSEVEDEKPKDVDLLPASERHKRIAHLQAQLMQAAAEGAVRVNRRRGPHRG 350
Query: 240 EDFTLTQALIKADFWLIFFXXXXXXXXXXTVIDNLGQMSQSLGYDNTHIFVSMISIWNFL 299
EDFTLTQAL+KADFWLIFF TVIDNLGQMSQSLGYDNTH+ VSMISIWNFL
Sbjct: 351 EDFTLTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVLVSMISIWNFL 410
Query: 300 GRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAH 359
GR+GGGYFSE++VRDYAYPRPVAMAVAQ +M++GHIF GWPGAMY+GTLLIGLGYGAH
Sbjct: 411 GRIGGGYFSELVVRDYAYPRPVAMAVAQLIMSVGHIFFAYGWPGAMYIGTLLIGLGYGAH 470
Query: 360 WAIVPAAASELFGLKKFGALYNFLTLANPAGS-IFTSM 396
WAIVPA ASELFGLKKFGALYNFLTLANPAGS +F+ M
Sbjct: 471 WAIVPATASELFGLKKFGALYNFLTLANPAGSLVFSGM 508
|
|
| TAIR|locus:2159752 AT5G50520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 503 (182.1 bits), Expect = 2.6e-95, Sum P(3) = 2.6e-95
Identities = 95/167 (56%), Positives = 123/167 (73%)
Query: 231 KRRRGPHRGEDFTLTQALIKADFWLIFFXXXXXXXXXXTVIDNLGQMSQSLGYDNTHIFV 290
+++R P GEDFTL QAL +ADFWLIF T+IDNLGQ+ SLGY NT IFV
Sbjct: 304 EKKRAPCIGEDFTLLQALGQADFWLIFMSLVLGVGSGITIIDNLGQICYSLGYSNTKIFV 363
Query: 291 SMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTL 350
S+ISI NFLGRV GGYFSE+I+R + PR +AM+V Q +M++G I+ + WPG +YV T+
Sbjct: 364 SLISISNFLGRVAGGYFSELIIRKLSLPRTLAMSVVQAIMSLGLIYYAIDWPGKIYVVTI 423
Query: 351 LIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGS-IFTSM 396
+IG+GYGAHWAI PA+ S++FGLK FG+LYNF A P GS +F+ +
Sbjct: 424 VIGMGYGAHWAIAPASVSDIFGLKSFGSLYNFQITALPIGSFVFSGV 470
|
|
| TAIR|locus:2832385 AT5G50630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 503 (182.1 bits), Expect = 2.6e-95, Sum P(3) = 2.6e-95
Identities = 95/167 (56%), Positives = 123/167 (73%)
Query: 231 KRRRGPHRGEDFTLTQALIKADFWLIFFXXXXXXXXXXTVIDNLGQMSQSLGYDNTHIFV 290
+++R P GEDFTL QAL +ADFWLIF T+IDNLGQ+ SLGY NT IFV
Sbjct: 304 EKKRAPCIGEDFTLLQALGQADFWLIFMSLVLGVGSGITIIDNLGQICYSLGYSNTKIFV 363
Query: 291 SMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTL 350
S+ISI NFLGRV GGYFSE+I+R + PR +AM+V Q +M++G I+ + WPG +YV T+
Sbjct: 364 SLISISNFLGRVAGGYFSELIIRKLSLPRTLAMSVVQAIMSLGLIYYAIDWPGKIYVVTI 423
Query: 351 LIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGS-IFTSM 396
+IG+GYGAHWAI PA+ S++FGLK FG+LYNF A P GS +F+ +
Sbjct: 424 VIGMGYGAHWAIAPASVSDIFGLKSFGSLYNFQITALPIGSFVFSGV 470
|
|
| TAIR|locus:2059829 AT2G16660 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 415 (151.1 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
Identities = 88/254 (34%), Positives = 140/254 (55%)
Query: 209 RKRIAQLQARLFHAAAEGAVRV-KRRRGPHRGEDFTLTQALIKADFWLIFFXXXXXXXXX 267
R IA + + AA A K+R+ P GED T+ +A++ DFW++F
Sbjct: 285 RSEIAAAEKEVIVVAAVAAEEEEKKRKKPVLGEDHTIMEAVLTVDFWVLFVSFLCGVGTG 344
Query: 268 XTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 327
V++N+GQ+ +LGY N IFVSM SIW F GR+ G SE ++ PRP+ A +Q
Sbjct: 345 LAVMNNMGQIGLALGYTNVSIFVSMTSIWGFFGRILSGTLSEYFLKKAGTPRPLWNAASQ 404
Query: 328 FVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLAN 387
+MA+G+I + + P ++Y+G++++G+ YG AI ASELFGLK +G +YN L L
Sbjct: 405 ILMAVGYILMALAVPNSLYIGSMVVGVCYGVRLAITVPTASELFGLKYYGLIYNILVLNL 464
Query: 388 PAGS-IFTSM-----------PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHR 435
P GS +F+ + P C G+ CY L ++M+ ++ V L ++L +R
Sbjct: 465 PLGSFLFSGLLAGFLYDAEATPTPGGGNTCVGAHCYRLIFIVMALASVIGVGLDLVLAYR 524
Query: 436 TTNVYSHLYGKSRS 449
T +Y+ ++ +S
Sbjct: 525 TKEIYAKIHASKKS 538
|
|
| TAIR|locus:2116855 AT4G34950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 398 (145.2 bits), Expect = 3.3e-57, Sum P(2) = 3.3e-57
Identities = 78/236 (33%), Positives = 133/236 (56%)
Query: 226 GAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFXXXXXXXXXXTVIDNLGQMSQSLGYDN 285
G + ++ P GE+ T+ +A++ DFW++F V++N+GQ+ +LGY +
Sbjct: 324 GTIVTTEKKRPVLGEEHTIMEAMLTVDFWVLFVSFLCGVGTGLAVMNNMGQIGLALGYTD 383
Query: 286 THIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAM 345
IFVSM SIW F GR+ G SE ++ PRP+ A AQ +MA+G++ + + PG++
Sbjct: 384 VSIFVSMTSIWGFFGRILSGTISEHFIKKAGTPRPLWNAAAQIIMAVGYLLMALALPGSL 443
Query: 346 YVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGS-IFTSM-------- 396
Y+G++++G+ YG AI ASELFGLK +G +YN L L P GS +F+ +
Sbjct: 444 YIGSMVVGVCYGVRLAITVPTASELFGLKYYGLIYNILILNMPLGSFLFSGLLAGLLYDA 503
Query: 397 ---PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRS 449
P C G+ C+ + ++M+ I+ V L ++L +RT +Y+ ++ ++
Sbjct: 504 EATPTPGGGNTCVGAHCFRIVFIVMAFASIIGVGLDLLLAYRTKGIYAKIHASKKT 559
|
|
| TAIR|locus:2040809 AT2G34350 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 385 (140.6 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
Identities = 73/217 (33%), Positives = 126/217 (58%)
Query: 241 DFTLTQALIKADFWLIFFXXXXXXXXXXTVIDNLGQMSQSLGYDNTHI--FVSMISIWNF 298
D + +A+ +FWL+F I+N+ QM +SL Y + VS+ SIWNF
Sbjct: 305 DMNVLEAICTTNFWLLFVAMICGMGSGLATINNIRQMGESLRYSTVQLNSLVSLWSIWNF 364
Query: 299 LGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGA 358
LGR G GY S+ + + +PRPV MA+ +MAIGHI + G G++Y+G+LL+GL YG+
Sbjct: 365 LGRFGSGYISDTYLHSHGWPRPVFMAITLGLMAIGHIVMASGLLGSLYIGSLLVGLAYGS 424
Query: 359 HWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSMPRV---------DEPLKCEGSI 409
W+++P SE+FG+ G ++ +++A+P GS F S+ + ++ C G+
Sbjct: 425 QWSLMPTITSEIFGVLHMGTIFYTISIASPVGSYFFSVKVIGYLYDKVASEDDHSCYGNH 484
Query: 410 CYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGK 446
C+ + +IM+ + ++ +++++L+ RT Y+ L K
Sbjct: 485 CFRTSFLIMAAMALLGSLVALVLLLRTKKFYATLVAK 521
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| TAIR|locus:2027284 AT1G74780 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 376 (137.4 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
Identities = 74/218 (33%), Positives = 125/218 (57%)
Query: 240 EDFTLTQALIKADFWLIFFXXXXXXXXXXTVIDNLGQMSQSLGYDNTHI--FVSMISIWN 297
E+ L QA+ K FWL+F + I+N+ Q+ +SL Y + I VS+ SIWN
Sbjct: 311 ENLNLLQAMKKLSFWLLFLAMICGMGSGLSTINNIRQIGESLRYSSVEINSLVSLWSIWN 370
Query: 298 FLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYG 357
FLGR G GY S+ ++ +PRP+ MA M+IGH+ + G+ G +YVG++++G+ YG
Sbjct: 371 FLGRFGAGYASDALLHKKGWPRPLLMAATLGTMSIGHLIIASGFQGNLYVGSVIVGVCYG 430
Query: 358 AHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSMPRVD---------EPLKCEGS 408
+ W+++P SELFG++ G ++N +++A+P GS S+ + E C GS
Sbjct: 431 SQWSLMPTITSELFGIRHMGTIFNTISVASPIGSYIFSVRLIGYIYDKTASGEGNTCYGS 490
Query: 409 ICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGK 446
C+ L+ +IM+ + +++++L RT +Y + K
Sbjct: 491 HCFRLSFIIMASVAFFGFLVAIVLFFRTKTLYRQILVK 528
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| TAIR|locus:2046238 AT2G28120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 353 (129.3 bits), Expect = 4.6e-56, Sum P(2) = 4.6e-56
Identities = 81/228 (35%), Positives = 120/228 (52%)
Query: 236 PHRGEDFTLTQALIKADFWLIFFXXXXXXXXXXTVIDNLGQMSQSLGYDNTHI--FVSMI 293
P RGED+T+ QAL+ D ++F T +DNLGQ+ +SLGY N + FVS++
Sbjct: 319 PPRGEDYTILQALLSTDMIILFVATFCGLGSSLTAVDNLGQIGESLGYPNHTVSSFVSLV 378
Query: 294 SIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIG 353
SIWN+ GRV G+ SE ++ Y PRP+ M + + GH+ + PG++Y+ ++L+G
Sbjct: 379 SIWNYFGRVFSGFVSEYLLAKYKLPRPLMMTLVLLLSCAGHLLIAFPVPGSVYIASILMG 438
Query: 354 LGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIF-----TSMPRVDEPLK---- 404
+GA ++ A SELFGLK + L+N LA+P GS T M E LK
Sbjct: 439 FSFGAQLPLLFAIISELFGLKYYSTLFNCGQLASPLGSYILNVRVTGMLYDKEALKQLTA 498
Query: 405 ------------CEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVY 440
C GS CY L +I++ + ++S+ L RT Y
Sbjct: 499 RGLTRKDVKDLTCLGSQCYKLPFLILAAVTFFGALVSLGLAIRTREFY 546
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| TAIR|locus:2056103 AT2G39210 "AT2G39210" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 352 (129.0 bits), Expect = 6.4e-55, Sum P(2) = 6.4e-55
Identities = 65/158 (41%), Positives = 95/158 (60%)
Query: 236 PHRGEDFTLTQALIKADFWLIFFXXXXXXXXXXTVIDNLGQMSQSLGYDNTHI--FVSMI 293
P RG+D+T+ QAL D ++F T IDNLGQ+ SLGY + FVS++
Sbjct: 328 PERGDDYTILQALFSVDMLILFLATICGVGGTLTAIDNLGQIGNSLGYPKRSVSTFVSLV 387
Query: 294 SIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIG 353
SIWN+ GRV G SEI + Y +PRP+ + + + GH+ + PG +YV +++IG
Sbjct: 388 SIWNYYGRVVSGVVSEIFLIKYKFPRPLMLTMVLLLSCAGHLLIAFNVPGGLYVASVIIG 447
Query: 354 LGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGS 391
+GA W ++ A SE+FGLK + LYNF ++A+P GS
Sbjct: 448 FCFGAQWPLLFAIISEIFGLKYYSTLYNFGSVASPIGS 485
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | gw1.88.227.1 | annotation not avaliable (585 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 453 | |||
| pfam06813 | 248 | pfam06813, Nodulin-like, Nodulin-like | 1e-54 | |
| TIGR00890 | 377 | TIGR00890, 2A0111, oxalate/formate antiporter fami | 1e-11 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 0.001 | |
| PTZ00207 | 591 | PTZ00207, PTZ00207, hypothetical protein; Provisio | 0.001 | |
| TIGR04259 | 405 | TIGR04259, oxa_formateAnti, oxalate/formate antipo | 0.004 |
| >gnl|CDD|219187 pfam06813, Nodulin-like, Nodulin-like | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 1e-54
Identities = 56/151 (37%), Positives = 91/151 (60%)
Query: 2 QMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAP 61
+C+ I + N +FNTA+LV+C++NFP+SRG V+GILKG+AGL AI TQ+YT I
Sbjct: 98 LLCLAICLAGNSICWFNTASLVTCIRNFPESRGVVLGILKGYAGLSAAIYTQLYTAIFGN 157
Query: 62 DHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVML 121
D ++L+ + A+ P +V + ++ IRP G + S+S F + + LA YL+ + +
Sbjct: 158 DASSLLLLNALVPLVVSLVALYFIRPCPGKVGEQRSESVVFLVFNVLSVALAVYLVAMSI 217
Query: 122 VEDLVDLNHTVIIIFTVILFVLLFIPIVIPI 152
+ DL+ I+ +LL +P+ +PI
Sbjct: 218 LSKSFDLSSAEYYALGAIMVLLLLVPLAVPI 248
|
This family represents a conserved region within plant nodulin-like proteins. Length = 248 |
| >gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 238 RGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISI 295
+D+T+ + L FW+++ S L + SGL +I QSLG + + VS+ SI
Sbjct: 192 SVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSI 251
Query: 296 WNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIG--HIFLGMGWPGAMYVGTL-LI 352
+N GR G S+ I R M++ + A+G + +++ T+ L+
Sbjct: 252 FNGGGRPFLGALSDKI------GRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALV 305
Query: 353 GLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTS 395
+G ++ P+ S++FG A Y FL A IF
Sbjct: 306 FFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGG 348
|
This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 38/184 (20%), Positives = 69/184 (37%), Gaps = 14/184 (7%)
Query: 253 FWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIV 312
L FF L G LT + Q L + +S+ + LG + GG S+ +
Sbjct: 180 LALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLG 239
Query: 313 RDYAYPRPVAMAVAQFVMAIGHIFLGMGW-PGAMYVGTLLIGLGYGAHWAIVPAAASELF 371
R R + + + + A+G + L + + V LL+G G G + + ASEL
Sbjct: 240 R-----RRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELA 294
Query: 372 GLKKFGALYNFLTLANPAGSIFTS--MPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILS 429
+ G G + + + Y +I++ L ++A +L
Sbjct: 295 PPEARGTASGLFNTFGSLGGALGPLLAGLLLD------TGGYGGVFLILAALALLAALLL 348
Query: 430 MILV 433
++L
Sbjct: 349 LLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 34/147 (23%), Positives = 56/147 (38%), Gaps = 10/147 (6%)
Query: 253 FWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEI 310
L L G GL L +++ LG + VS S+ LG + GY S+
Sbjct: 2 LLLFLGFFLSGLDRGLLSP-ALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 311 IVRDYAYPRPVAMAVAQFVMAIGHIFLGMGW-PGAMYVGTLLIGLGYGAHWAIVPAAASE 369
+ R + + + A+G + L + VG L+GLG GA + A +E
Sbjct: 61 ------FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAE 114
Query: 370 LFGLKKFGALYNFLTLANPAGSIFTSM 396
F K+ G + G++ +
Sbjct: 115 WFPPKERGRALGLFSAGFGLGALLGPL 141
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|140234 PTZ00207, PTZ00207, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.001
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 13 GETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQV 54
G F+ A+V+ + FP +RG VV I+K F GLG AIL +
Sbjct: 133 GCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSI 174
|
Length = 591 |
| >gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.004
Identities = 35/177 (19%), Positives = 69/177 (38%), Gaps = 20/177 (11%)
Query: 231 KRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--- 287
K+ + DF+ + L FW+++ ++ + GL LG +++ G +
Sbjct: 187 KQAKVVQTRRDFSPGEMLRTPVFWVMYTMFVMVAAGGLMATAQLGPIAKDFGVADVPVTL 246
Query: 288 ---------IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIG-HIFL 337
+S+ I N R G+ S+ I R+ M VA + +G ++
Sbjct: 247 LGLTMAALTFALSIDRILNGFTRPFFGWISDKIGREN------TMFVAFGIEGVGIYLLP 300
Query: 338 GMGW-PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIF 393
G P A + + L+ +G +++ PA ++ FG K L A ++
Sbjct: 301 TFGHNPVAFVILSALVFFAWGEIYSLFPATCADTFGSKYAATNAGLLYTAKGTAALL 357
|
This model represents a subgroup of the more broadly defined model TIGR00890, which in turn belongs to the Major Facilitator transporter family. Seed members for this family include the known oxalate/formate antiporter of Oxalobacter formigenes, as well as transporter subunits co-clustered with the two genes of a system that decarboxylates oxalate into formate. In many of these cassettes, two subunits are found rather than one, suggesting the antiporter is sometimes homodimeric, sometimes heterodimeric. Length = 405 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 453 | |||
| PTZ00207 | 591 | hypothetical protein; Provisional | 100.0 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.55 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.52 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.42 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.36 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.36 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.35 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.33 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.32 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.15 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.14 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.11 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.1 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.09 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.07 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.96 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 98.95 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.94 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.94 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 98.93 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 98.93 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.93 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.92 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.88 | |
| PRK12382 | 392 | putative transporter; Provisional | 98.82 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.8 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.79 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 98.77 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 98.77 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.76 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.75 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 98.75 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 98.73 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.72 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 98.72 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.71 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.71 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.69 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.69 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.69 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.68 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 98.67 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.66 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 98.65 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.65 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.63 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 98.61 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 98.61 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.61 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.59 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 98.59 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.55 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 98.54 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.5 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.5 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.49 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 98.48 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.47 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.44 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.44 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.44 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.43 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.43 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.43 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.39 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.39 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.37 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.37 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.37 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.33 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.31 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.31 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.29 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.27 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.26 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 98.25 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.25 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.25 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.25 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.23 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.23 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.22 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 98.22 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.21 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.2 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.19 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.18 | |
| PRK03699 | 394 | putative transporter; Provisional | 98.17 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 98.16 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.16 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 98.14 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.13 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.11 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 98.1 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.1 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 98.08 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.07 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.07 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 98.06 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.06 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.06 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.04 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.03 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.02 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.02 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.02 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 98.01 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.0 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 97.98 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 97.97 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 97.96 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 97.96 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 97.95 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 97.95 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 97.94 | |
| PRK11043 | 401 | putative transporter; Provisional | 97.93 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 97.93 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.93 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.91 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 97.91 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 97.89 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 97.88 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 97.87 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 97.86 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 97.86 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 97.86 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 97.86 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 97.84 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 97.81 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 97.81 | |
| PRK12382 | 392 | putative transporter; Provisional | 97.8 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 97.73 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 97.73 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 97.72 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 97.72 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 97.66 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 97.65 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 97.64 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 97.61 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 97.61 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 97.59 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 97.59 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 97.56 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 97.52 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 97.48 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 97.45 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 97.44 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 97.42 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 97.41 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 97.36 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 97.35 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 97.32 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 97.25 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.24 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 97.19 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 97.16 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 97.16 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 97.13 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.13 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 97.1 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 97.09 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 97.08 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.06 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 97.05 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 97.0 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 96.88 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 96.86 | |
| PRK11462 | 460 | putative transporter; Provisional | 96.85 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 96.76 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 96.75 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 96.73 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 96.71 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 96.58 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 96.58 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 96.51 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 96.49 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 96.49 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 96.47 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 96.44 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 96.38 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 96.32 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 96.27 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 96.27 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 96.19 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 96.18 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 96.18 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 96.16 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 96.04 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 95.93 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 95.89 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 95.87 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 95.82 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 95.55 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 95.48 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 95.36 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 95.24 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 95.24 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 95.19 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 95.17 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 94.92 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 94.89 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 94.52 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 94.51 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 94.36 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 94.29 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 94.21 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 93.86 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 93.67 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 92.9 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 92.41 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 91.86 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 91.62 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 91.34 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 91.19 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 90.98 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 90.94 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 90.43 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 90.29 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 90.28 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 90.26 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 89.23 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 88.35 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 88.17 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 87.25 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 87.05 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 85.03 | |
| PRK11462 | 460 | putative transporter; Provisional | 84.34 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 81.81 |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-68 Score=570.93 Aligned_cols=396 Identities=19% Similarity=0.310 Sum_probs=330.3
Q ss_pred CchhHHHHHhhcCccchhhhHhHHHhhhCCCCCCchhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q 012908 1 MQMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIA 80 (453)
Q Consensus 1 ~~~c~~~~l~g~g~~~~~ta~lvt~~~nFP~~RG~v~gl~k~~~GLSaaifs~i~~~ff~~d~~~fll~la~~~~~v~~~ 80 (453)
|++|++.++.|+|++++++++++++++|||++||+++|+.+++.|+|++|+++++.+++.+|.+.+++++++++.+++++
T Consensus 121 ~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll 200 (591)
T PTZ00207 121 VRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGIL 200 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hheeecccCCCCC---C---CCCCC-----------------CchhHHHHHHHHHHHHHHHHHHhhhcccCChhHHHHHH
Q 012908 81 LMFIIRPVGGHRQ---V---RPSDS-----------------SSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFT 137 (453)
Q Consensus 81 ~~~fvr~~~~~~~---~---~~~~~-----------------~~f~~~~~i~~~l~~yl~~~~~~~~~~~~s~~~~~~~~ 137 (453)
++.++|.+|++.+ + +++|+ ++|.+++++++++++||++++++++|+++++..+..++
T Consensus 201 ~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~ 280 (591)
T PTZ00207 201 AIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFA 280 (591)
T ss_pred HHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 9999998875532 1 12222 27999999999999999999999999999999999999
Q ss_pred HHHH-HHhhhc-cccceeeeccccCCCchhhhhcCCCCCCCCCCCCCccchhhhcccccCCCCccCCCchhhHHHHHHHH
Q 012908 138 VILF-VLLFIP-IVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQL 215 (453)
Q Consensus 138 ~~~~-~ll~~p-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (453)
++++ ++|+.| +++|++. .+.. ++ ++ ++ +.+ +.+ ..+++++..+
T Consensus 281 ~v~~~lll~~p~l~ip~~~--~~~~-~~-~~----~~--~~~-----~~~------~~~~~~~~~~-------------- 325 (591)
T PTZ00207 281 VTVIVLTVIFPFMAFPLTT--FDGK-RP-HD----DS--DGK-----AKE------HVEAGEEVSA-------------- 325 (591)
T ss_pred HHHHHHHHHHHHHhhhHHH--hccC-Cc-CC----Cc--ccc-----ccc------cccccccccc--------------
Confidence 9888 777788 7788764 2111 10 00 00 000 000 0000000000
Q ss_pred HHHHHhhhhhhh-hhhhcc-CCCCCCCCCCHHHHhhcHHHHHHHHHHHhhccccceeecchHHHHHHh-CC-Chh--hH-
Q 012908 216 QARLFHAAAEGA-VRVKRR-RGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSL-GY-DNT--HI- 288 (453)
Q Consensus 216 ~~~~~~~~~~~~-~~~~~~-~~p~~~~~~t~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~al-g~-~~~--~~- 288 (453)
.++. ...+.+ ..|++++ |++|++++.|||++|++++|+.|+|++++||++||++++ |+ .+. ..
T Consensus 326 --------~~~~~~~~~~~~~~P~~~~--t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~ 395 (591)
T PTZ00207 326 --------AEDKVVETDVDYIAPQFQE--TFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTL 395 (591)
T ss_pred --------cccccccccccCCCCCCcc--hHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceee
Confidence 0000 001111 3488766 999999999999999999999999999999999999999 77 333 33
Q ss_pred HHHHHHHhhhhccccccchhhhhhhccC----CchhHHHHHHHHHHHHHHHHHhccCc-hhHHHHHHHHHhhhhhhcchh
Q 012908 289 FVSMISIWNFLGRVGGGYFSEIIVRDYA----YPRPVAMAVAQFVMAIGHIFLGMGWP-GAMYVGTLLIGLGYGAHWAIV 363 (453)
Q Consensus 289 ~Vsl~si~n~~GRl~~G~lsD~l~~~~~----~~r~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~~~liG~~yG~~~~~~ 363 (453)
+|+++|+||++||+++|++| .+.+|++ +|||.+++++++ +++++++++...| ..||++++++|+|||++|+++
T Consensus 396 ~vsL~si~~~~GRl~~g~~~-~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~ 473 (591)
T PTZ00207 396 LTVLNGVGSAVGRLCMSYFE-IWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATI 473 (591)
T ss_pred ehhhhhHHHHhhHHHHHHHH-HHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHH
Confidence 89999999999999999999 6666665 999999999999 8888888877777 799999999999999999999
Q ss_pred HHHHHHhhcccchhhhhhhHhhhhhhHhhhhcC----------cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 012908 364 PAAASELFGLKKFGALYNFLTLANPAGSIFTSM----------PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 433 (453)
Q Consensus 364 p~i~s~~FG~k~fg~~yg~~~la~~ig~~l~~~----------~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~ 433 (453)
|++++|+|| ||||+|||++++++++|+++||+ .+++++.+|.|++||+.+|++++++|++|+++++++|
T Consensus 474 ~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~ 552 (591)
T PTZ00207 474 ALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVH 552 (591)
T ss_pred HHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhee
Confidence 999999999 99999999999999999999987 2345677999999999999999999999999999999
Q ss_pred Hhhhhhhhhhh
Q 012908 434 HRTTNVYSHLY 444 (453)
Q Consensus 434 ~r~r~~y~~~~ 444 (453)
+||||||++..
T Consensus 553 ~R~r~~y~~~~ 563 (591)
T PTZ00207 553 LQYRRLCLKAL 563 (591)
T ss_pred eehHHHHHHHH
Confidence 99999998553
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=292.14 Aligned_cols=152 Identities=45% Similarity=0.890 Sum_probs=145.5
Q ss_pred CchhHHHHHhhcCccchhhhHhHHHhhhCCCCCCchhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q 012908 1 MQMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIA 80 (453)
Q Consensus 1 ~~~c~~~~l~g~g~~~~~ta~lvt~~~nFP~~RG~v~gl~k~~~GLSaaifs~i~~~ff~~d~~~fll~la~~~~~v~~~ 80 (453)
|+||++.+++++|++|+|||+++||+||||+|||+|+|++|+|+||||+|||++|++||++|+++|++|+|++|.+++++
T Consensus 97 ~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~ 176 (250)
T PF06813_consen 97 WLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLV 176 (250)
T ss_pred HHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hheeecccCC--CCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHHhhhccccce
Q 012908 81 LMFIIRPVGG--HRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPI 152 (453)
Q Consensus 81 ~~~fvr~~~~--~~~~~~~~~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~s~~~~~~~~~~~~~ll~~p~~i~~ 152 (453)
+++++|++|+ +++++++|+++|...+.+++++++||+++++++++.++++..+...+++++++|++|++||+
T Consensus 177 ~~~~vr~~~~~~~~~~~~~~~~~F~~~~~i~l~la~yLl~~~i~~~~~~~s~~~~~~~~~il~llL~~Pl~i~~ 250 (250)
T PF06813_consen 177 AMFFVRPVPPSPSRTRQPSESKRFLFFFAIALALAIYLLVISILQNFVKLSRAARVIFAVILLLLLLLPLAIPV 250 (250)
T ss_pred HhhheeccCCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhccC
Confidence 9999998875 34556778889999999999999999999999999999999999999999999999999984
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-13 Score=138.99 Aligned_cols=169 Identities=25% Similarity=0.358 Sum_probs=121.7
Q ss_pred CHHHHhhcHHHHHHHHHHHhhccccceeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchh
Q 012908 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (453)
Q Consensus 243 t~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~ 320 (453)
+.++.++++++|+++..+++.......+.+...+..+++|.++.. ...++.++.+.+||+.+|+++||++||+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~---- 272 (377)
T TIGR00890 197 TVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKT---- 272 (377)
T ss_pred hHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----
Confidence 345678889999999888877666666666667777888876543 47888999999999999999999977432
Q ss_pred HHHHHHHHHHHHHHHHHhccC--ch-hHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhh
Q 012908 321 VAMAVAQFVMAIGHIFLGMGW--PG-AMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIF 393 (453)
Q Consensus 321 ~~l~~~~~~~~~~~ll~~~~~--~~-~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l 393 (453)
+.+..+++.++.+++...+ .. .+.....+.|+++|..+...|.+++|.++.++.|+.+|+.. ++..+|+.+
T Consensus 273 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~ 350 (377)
T TIGR00890 273 --MSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLI 350 (377)
T ss_pred --hhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 2333444444444333222 22 23345678899999999999999999999999999999874 555666666
Q ss_pred hcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHH
Q 012908 394 TSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAV 426 (453)
Q Consensus 394 ~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~ 426 (453)
.+. .+. .-|+..|.+.++++++++
T Consensus 351 ~g~l~~~---------~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 351 ASHALTE---------IGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHhh---------hchhhHHHHHHHHHHHhc
Confidence 554 221 128889988887776654
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-13 Score=147.28 Aligned_cols=330 Identities=18% Similarity=0.222 Sum_probs=214.0
Q ss_pred CchhH-HHHHhhcCccchhhhHhHHHhhhCCCCCCchhhhhhhhhhhhHHHHHHHHHHhcC--CCchHHHHHHHHHHHHH
Q 012908 1 MQMCI-LIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHA--PDHANLIFMVAVGPAMV 77 (453)
Q Consensus 1 ~~~c~-~~~l~g~g~~~~~ta~lvt~~~nFP~~RG~v~gl~k~~~GLSaaifs~i~~~ff~--~d~~~fll~la~~~~~v 77 (453)
|++.+ |-.++|.|.++.++.+++..-.-|+++|+.|+|+..+--|++..+|..+-..+++ +....++.+.++. +-
T Consensus 135 ~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~--l~ 212 (509)
T KOG2504|consen 135 WQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGIS--LN 212 (509)
T ss_pred HHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHH--HH
Confidence 45444 5567999999999999999999999999999999999999999999999998884 4555666555544 55
Q ss_pred HHhhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHHhhhccccceeeecc
Q 012908 78 VIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFF 157 (453)
Q Consensus 78 ~~~~~~fvr~~~~~~~~~~~~~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~s~~~~~~~~~~~~~ll~~p~~i~~~~~~~ 157 (453)
++++....||..++.....+++.+ + +. .+
T Consensus 213 ~~~~~~~~rp~~~~~~~~~~~~~~----------------------~----~~-----------------------~~-- 241 (509)
T KOG2504|consen 213 VLVAGALLRPLSPPKKPNEEKDLR----------------------N----SA-----------------------AS-- 241 (509)
T ss_pred HHHHHHHcCCCCcCCCchhhhhhc----------------------c----cc-----------------------cc--
Confidence 666777888765432211100000 0 00 00
Q ss_pred ccCCCchhhhhcCCCCCCCCCCCCCccchhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccCCCC
Q 012908 158 LERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPH 237 (453)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 237 (453)
.+..+.+.+. ... +.++... +.... .++..++ .+.+.++.+.
T Consensus 242 ~~~~~~~~~~--~~~----------~~~~~~~--------~~~~~--~~~~~~~----------------~~~~~~~~~~ 283 (509)
T KOG2504|consen 242 VESTPKPVEL--RIS----------ERDSGLK--------KLSLS--NLATLKR----------------GPDKWRNSPL 283 (509)
T ss_pred cccccccccc--ccc----------cCCCCCC--------ccccc--chhhhhh----------------CCccccccch
Confidence 0000000000 000 0000000 00000 0000000 0000000011
Q ss_pred -CCCCCCHHHHhhcHHHHHHHHHHHhhccccceeecchHHHHHHhCCChh--hHHHHHHHHhhhhccccccchhhhhhhc
Q 012908 238 -RGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRD 314 (453)
Q Consensus 238 -~~~~~t~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~ 314 (453)
...+.--.+.++++.||.+.+...+....-..-...+...++++|+++. +..+|++++.|.+||++.|++.|+-.
T Consensus 284 ~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~-- 361 (509)
T KOG2504|consen 284 QAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPG-- 361 (509)
T ss_pred hhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccc--
Confidence 1011112578999999999999988888777778888888999999865 44999999999999999999999764
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhh
Q 012908 315 YAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPA 389 (453)
Q Consensus 315 ~~~~r~~~l~~~~~~~~~~~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~i 389 (453)
.++.+...++.+...++.+.... .+...+..-+++.|++.|...++.+.++.|+.|+.+++.-||++. ++..+
T Consensus 362 --~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~ 439 (509)
T KOG2504|consen 362 --IRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALV 439 (509)
T ss_pred --cchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHc
Confidence 23444545555555555544333 333468889999999999999999999999999999999999975 44445
Q ss_pred HhhhhcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 012908 390 GSIFTSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 433 (453)
Q Consensus 390 g~~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~ 433 (453)
|+.+.+. .|. ++-|..+|+......+++.++.+...
T Consensus 440 gpPiag~~~d~--------tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 440 GPPIAGLLYDI--------TGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred Ccccceeeeec--------cCCeeeehhhcChHHHHHHHHHHHhH
Confidence 5555553 232 22399999999888888877666655
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.8e-12 Score=131.82 Aligned_cols=186 Identities=13% Similarity=0.138 Sum_probs=125.9
Q ss_pred HHhhcHHHHHHHHHHHhhccccceeecchHHHHHHhCCChh--hHHHHHHHHhhhhccccccchhhhhhhccCCchhHHH
Q 012908 246 QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 323 (453)
Q Consensus 246 ~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l 323 (453)
+.+++++||.+.+..++......+....+.+..+++|++.. ....++.++.+.++|+.+|.++|+...+ ..|...+
T Consensus 236 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~ 313 (455)
T TIGR00892 236 SLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIR--PHVQYLF 313 (455)
T ss_pred HHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC--HHHHHHH
Confidence 57899999988887766555555556667777788888754 3488889999999999999999973211 1111222
Q ss_pred HHHHHHHHHHHHHHh-ccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcC-c
Q 012908 324 AVAQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSM-P 397 (453)
Q Consensus 324 ~~~~~~~~~~~ll~~-~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~-~ 397 (453)
.....+..++.++.. ..+...+++..++.|+++|..+...++++.|.++.++.|+.+|+.. ++..+|+.+.+. .
T Consensus 314 ~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~ 393 (455)
T TIGR00892 314 SFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLV 393 (455)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeee
Confidence 222222223332322 2334456778899999999999999999999999999999999975 555666666664 2
Q ss_pred CCCCCCcccCCcccHHHHHHHHHHHHHHHH----HHHHHHHhhhhhhh
Q 012908 398 RVDEPLKCEGSICYFLTSMIMSGLCIVAVI----LSMILVHRTTNVYS 441 (453)
Q Consensus 398 ~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~----l~l~l~~r~r~~y~ 441 (453)
+. .+.|+..|.+.+++++++.+ ..+..+.++||..+
T Consensus 394 ~~--------~g~~~~~f~~~~~~~li~~~~~~~~~~~~~~~~~~~~~ 433 (455)
T TIGR00892 394 DA--------TKNYKYIFYASGSIVVSAGLFLAIGNYINYRLLAKEQK 433 (455)
T ss_pred hh--------cCCcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22488888888777766655 34444555555443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.6e-11 Score=126.33 Aligned_cols=192 Identities=17% Similarity=0.121 Sum_probs=121.8
Q ss_pred HHhhcHHHHHHHHHHHhhccccceeecchHHHHHH-hCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHH
Q 012908 246 QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVA 322 (453)
Q Consensus 246 ~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~a-lg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~ 322 (453)
..++++.+|.+++..++....-..+........++ .|++... ...++.++++.+|++++|+++||+.++++... .
T Consensus 248 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~-~- 325 (452)
T PRK11273 248 YVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT-G- 325 (452)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchH-H-
Confidence 36789999999988877665444445556666665 5766433 35668889999999999999999965433221 1
Q ss_pred HHHHHHHHHHHHHHHhc---cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhh-hHhhhh
Q 012908 323 MAVAQFVMAIGHIFLGM---GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANP-AGSIFT 394 (453)
Q Consensus 323 l~~~~~~~~~~~ll~~~---~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~-ig~~l~ 394 (453)
.....+..++.+++.. .++..+++...++|....+........+.|.+..+..|+..|+.. ++.. +|+.+.
T Consensus 326 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~ 404 (452)
T PRK11273 326 -VFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 404 (452)
T ss_pred -HHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhH
Confidence 1112222222222211 122223344455555444333444566789999889999999864 3322 345555
Q ss_pred cC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccc
Q 012908 395 SM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRS 449 (453)
Q Consensus 395 ~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r~r~~y~~~~~~~~~ 449 (453)
+. .|. .+ |+..|.++.+.++++++...++.+-+||--+++..||+.
T Consensus 405 g~l~~~--------~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (452)
T PRK11273 405 GYTVDF--------FG-WDGGFMVMIGGSILAVILLIVVMIGEKRHHEELLQKRNG 451 (452)
T ss_pred HHHHHH--------hc-chHHHHHHHHHHHHHHHHHHHHhccccchHHHHHhhhcC
Confidence 43 222 12 999999999999999998887777777767777777654
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.4e-11 Score=119.90 Aligned_cols=181 Identities=13% Similarity=0.088 Sum_probs=118.1
Q ss_pred CHHHHhhcHHHHHHHHHHHhhccccceeecchHHHHHH-hCCChh--hHHHHHHHHhhhhccccccchhhhhhhccCCch
Q 012908 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 319 (453)
Q Consensus 243 t~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~a-lg~~~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r 319 (453)
+.++.++++++|.+++..++......++.....+..++ .|.+.. ....++.++.+.+|++..|+++||++||+....
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 286 (399)
T TIGR00893 207 QIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLV 286 (399)
T ss_pred chHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Confidence 56788999999999999888877777777767766654 576654 347788899999999999999999988642111
Q ss_pred hHHHHHHHHHHHHHHHHHhcc--CchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhh
Q 012908 320 PVAMAVAQFVMAIGHIFLGMG--WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIF 393 (453)
Q Consensus 320 ~~~l~~~~~~~~~~~ll~~~~--~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l 393 (453)
.............+...+... ......+...+++...++.+.....+++|.++.++-|+.+|+.. ++..+|+.+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i 366 (399)
T TIGR00893 287 FARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIV 366 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHH
Confidence 000111111111111111121 12223333333343333378889999999999999999999864 556666666
Q ss_pred hcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 012908 394 TSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 431 (453)
Q Consensus 394 ~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~ 431 (453)
.+. .+. .+.|+..|.+.++.++++.++.++
T Consensus 367 ~g~l~~~--------~g~~~~~~~~~~~~~~~~~~~~~~ 397 (399)
T TIGR00893 367 IGAIAAT--------TGSFAGALMVVAALALIGALSYLL 397 (399)
T ss_pred hhhhccC--------CCchhHHHHHHHHHHHHHHHHHHH
Confidence 654 222 234899999888888777766544
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=131.58 Aligned_cols=183 Identities=19% Similarity=0.284 Sum_probs=117.8
Q ss_pred CHHHHhhcHHHHHHHHHHHhhccccceeecchHHHHH-HhCCChh--hHHHHHHHHhhhhccccccchhhhhhhccCC-c
Q 012908 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAY-P 318 (453)
Q Consensus 243 t~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~-alg~~~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~-~ 318 (453)
.+++.++++.+|++++.+++..+....+.+.+....+ ..|.+.. ..+.+++.+++.+||+++|+++||++||+.. .
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~ 323 (476)
T PLN00028 244 VLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRG 323 (476)
T ss_pred HHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcch
Confidence 3567889999999999887776666655555556554 4588754 3478899999999999999999999987543 2
Q ss_pred hhHHHHHHHHHHHHHHHHHhccC-chhHHHHHHHHHh----hhhhhcchhHHHHHHhhcccchhhhhhhHhhhhhhHhhh
Q 012908 319 RPVAMAVAQFVMAIGHIFLGMGW-PGAMYVGTLLIGL----GYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIF 393 (453)
Q Consensus 319 r~~~l~~~~~~~~~~~ll~~~~~-~~~l~~~~~liG~----~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~ig~~l 393 (453)
|.+.+.+..++..+..+++.... .....+..++.++ ++|..+++.| + ++.|+.|+++|++..+..+|+.+
T Consensus 324 r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~-~~~~~~g~~~g~~~~~g~lg~~i 398 (476)
T PLN00028 324 RLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVP----F-VSRRSLGVISGLTGAGGNVGAVL 398 (476)
T ss_pred hHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCc----c-cChhhchhhhhhhhccccHHHHH
Confidence 44444444444443333332222 2222223334444 4555555554 3 35689999999986555444444
Q ss_pred hcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012908 394 TSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRT 436 (453)
Q Consensus 394 ~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r~ 436 (453)
.+. .+. .+.+.|+.+|.+.+++.+++.++.++++..+
T Consensus 399 ~~~l~~~------~~~~~y~~~f~~~~~~~~i~~~~~~~~~~~~ 436 (476)
T PLN00028 399 TQLLFFT------GSSYSTETGISLMGVMIIACTLPVAFIHFPQ 436 (476)
T ss_pred HHHHHHh------cCCccHhhHHHHHHHHHHHHHHHHHheeccc
Confidence 332 111 1234599999999989989888887775433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.6e-11 Score=124.02 Aligned_cols=184 Identities=12% Similarity=0.071 Sum_probs=112.7
Q ss_pred HHhhcHHHHHHHHHHHhhccccceeecchHHHHH-HhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHH
Q 012908 246 QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVA 322 (453)
Q Consensus 246 ~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~-alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~ 322 (453)
+.++++.+|.+++..++..+.-..+........+ ..|++..+ ...++..+++.+|++.+|+++||+++|+. ..
T Consensus 253 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~----~~ 328 (467)
T PRK09556 253 YVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRA----LV 328 (467)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch----HH
Confidence 4789999999999888876655444444554554 46887543 47778889999999999999999977522 11
Q ss_pred HHHHHHHHHHHHHHHhcc-CchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhh-----hhhhHhhhhcC
Q 012908 323 MAVAQFVMAIGHIFLGMG-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTL-----ANPAGSIFTSM 396 (453)
Q Consensus 323 l~~~~~~~~~~~ll~~~~-~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~l-----a~~ig~~l~~~ 396 (453)
............+++... +...+++...+.|+...+........+.|.+..++.|+-.|+... +..+++++.+.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~ 408 (467)
T PRK09556 329 ACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGM 408 (467)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHH
Confidence 111111111111122222 222344566666754333333344677799999999999999742 33455555554
Q ss_pred -cCC--CCCCcc-cCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 012908 397 -PRV--DEPLKC-EGSICYFLTSMIMSGLCIVAVILSMILV 433 (453)
Q Consensus 397 -~~~--~~~~~C-~G~~Cy~~~f~i~~~~~~~~~~l~l~l~ 433 (453)
.|+ ++...= ....-|+..|.+..++++++.++.+.+.
T Consensus 409 i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 449 (467)
T PRK09556 409 IADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIVA 449 (467)
T ss_pred HhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 231 110000 0022399999999988888888777665
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.9e-11 Score=123.13 Aligned_cols=174 Identities=17% Similarity=0.126 Sum_probs=102.7
Q ss_pred HhhcHHHHHHHHHHHhhccccceeecchHHHH-HHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHH
Q 012908 247 ALIKADFWLIFFSLLLGSGSGLTVIDNLGQMS-QSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 323 (453)
Q Consensus 247 ~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~-~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l 323 (453)
.++++.+|.+.+.+++....-..+.+...+.. +..|++... ...+++.+++.+||+++|+++||+.++++.+.....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~ 318 (434)
T PRK11663 239 VLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIF 318 (434)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHH
Confidence 56789999988776654333222223344444 346777543 478889999999999999999999554322221222
Q ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcC-cC
Q 012908 324 AVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSM-PR 398 (453)
Q Consensus 324 ~~~~~~~~~~~ll~~~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~-~~ 398 (453)
.+...+..+..+++...+...+.+...++|+...+........++|.|+.++.|+--|+.. ++..+||.+++. .+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~ 398 (434)
T PRK11663 319 AAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLE 398 (434)
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 2222222222222211111122223333343322233455677899999999999999864 666677766664 22
Q ss_pred CCCCCcccCCcccHHHHHHHHHHHHHHHHHH
Q 012908 399 VDEPLKCEGSICYFLTSMIMSGLCIVAVILS 429 (453)
Q Consensus 399 ~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~ 429 (453)
. .+ |+.+|.+.+++++++.++.
T Consensus 399 ~--------~g-~~~~f~~~~~~~~~~~~~~ 420 (434)
T PRK11663 399 I--------WH-WTGFFVVISIAAGISALLL 420 (434)
T ss_pred h--------cc-cHHHHHHHHHHHHHHHHHH
Confidence 1 23 8999998888877776544
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.3e-09 Score=112.14 Aligned_cols=181 Identities=17% Similarity=0.109 Sum_probs=110.1
Q ss_pred HHhhcHHHHHHHHHHHhhccccceeecchHHHHHH-hCCChh--hHHHHHHHHhhhhccccccchhhhhhhccCCchhHH
Q 012908 246 QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVA 322 (453)
Q Consensus 246 ~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~a-lg~~~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~ 322 (453)
+.++++.+|.+.+..++....-..+.....+..++ .|.+.. ....+++++.+.+|++.+|+++||++++++.. .
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~---~ 322 (438)
T TIGR00712 246 YVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGA---T 322 (438)
T ss_pred HHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccH---H
Confidence 46789999999887766554434455566666665 476654 34677899999999999999999997643331 1
Q ss_pred HHHHHHHHHHHHHHHhcc---CchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hh-hhhHhhhh
Q 012908 323 MAVAQFVMAIGHIFLGMG---WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LA-NPAGSIFT 394 (453)
Q Consensus 323 l~~~~~~~~~~~ll~~~~---~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la-~~ig~~l~ 394 (453)
.........++.+.+... +....++..++.|+...+.....-..+.|.++.++.|+..|+.. ++ ..+|+++.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~ 402 (438)
T TIGR00712 323 GVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 402 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhH
Confidence 111111122222222111 12222333334444322221222346789999999999998863 33 24566666
Q ss_pred cC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012908 395 SM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 438 (453)
Q Consensus 395 ~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r~r~ 438 (453)
+. .|. . -|..+|.+..+.++++.++.+.+...+||
T Consensus 403 G~l~~~--------~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (438)
T TIGR00712 403 GYTVDF--------F-GWDGGFMVMIGGSILAVILLIVVMIGEKR 438 (438)
T ss_pred HHHHHh--------c-cchHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 64 221 1 29999999999999998888877655543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-09 Score=113.16 Aligned_cols=172 Identities=13% Similarity=0.107 Sum_probs=114.4
Q ss_pred HHhhcHHHHHHHHHHHhhccccceeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHH
Q 012908 246 QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 323 (453)
Q Consensus 246 ~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l 323 (453)
+.++++++|.+.+.+++....-..+.+...++.++.|.+... ...+++++++.+||+..|.+.||+++|+ ..
T Consensus 200 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~----~~-- 273 (393)
T PRK09705 200 RVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRK----LL-- 273 (393)
T ss_pred ccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchH----HH--
Confidence 345778889888777665544445566677788888877543 4889999999999999999999987642 11
Q ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhc-ccchhhhhhhH----hhhhhhHhhhhcC-c
Q 012908 324 AVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFG-LKKFGALYNFL----TLANPAGSIFTSM-P 397 (453)
Q Consensus 324 ~~~~~~~~~~~ll~~~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG-~k~fg~~yg~~----~la~~ig~~l~~~-~ 397 (453)
.....+.+++.+++...++....+...+.|++.|..+......+.+.++ .++-|+.+|++ .++..+||.+.+. .
T Consensus 274 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~ 353 (393)
T PRK09705 274 MLALVLQLVGFCGFIWLPLQLPVLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLR 353 (393)
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333444433322122112223456789999888887777788886 45668888775 3566677777665 2
Q ss_pred CCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 012908 398 RVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 431 (453)
Q Consensus 398 ~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~ 431 (453)
|. .+-|...|.+.++.++++.++.+.
T Consensus 354 ~~--------~g~~~~~~~~~~~~~~~~~~~~~~ 379 (393)
T PRK09705 354 SI--------SGNYLMDWAFHALCVVGLMIITLR 379 (393)
T ss_pred HH--------hCCchHHHHHHHHHHHHHHHHHHH
Confidence 22 123999999999888877665544
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-09 Score=107.29 Aligned_cols=150 Identities=14% Similarity=0.171 Sum_probs=94.4
Q ss_pred CHHHHhhcHHHHHHHHHHHhhccccceeecchHHHHH-HhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCch
Q 012908 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 319 (453)
Q Consensus 243 t~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~-alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r 319 (453)
..++.++++.+|.+.+..++.......+........+ .+|.+... ...++.++.+.+|+++.|++.||..++++.+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~- 286 (379)
T TIGR00881 208 FLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGP- 286 (379)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchH-
Confidence 3567889999999988877765544444444444444 45776543 4778889999999999999999875543321
Q ss_pred hHHHHHHHHHHHHHHHHHhc---cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhh
Q 012908 320 PVAMAVAQFVMAIGHIFLGM---GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSI 392 (453)
Q Consensus 320 ~~~l~~~~~~~~~~~ll~~~---~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~ 392 (453)
.. ........++...+.. .+.....+...+.|+..++.......++.|.++.++-|+..|+.. ++..+|+.
T Consensus 287 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 364 (379)
T TIGR00881 287 -LA-VFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGL 364 (379)
T ss_pred -HH-HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhh
Confidence 11 1112222222222222 112234445566676666666677788999999999999999874 44445555
Q ss_pred hhc
Q 012908 393 FTS 395 (453)
Q Consensus 393 l~~ 395 (453)
+.+
T Consensus 365 ~~g 367 (379)
T TIGR00881 365 PLG 367 (379)
T ss_pred hHH
Confidence 444
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4e-09 Score=108.39 Aligned_cols=166 Identities=14% Similarity=0.072 Sum_probs=108.6
Q ss_pred HHHHHHHHhhccccceeecchHHHHHHhCCChh--hHHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHH
Q 012908 254 WLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMA 331 (453)
Q Consensus 254 Wll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~ 331 (453)
|.++..+++.......+.+...++.++.|.++. ....++.++.+.+|++..|.++||+++++. . ....+.+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~----~--~~~~~~~~ 296 (406)
T PRK11551 223 LLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRV----V--LLIYAGIL 296 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----H--HHHHHHHH
Confidence 444444444333333445556677778887654 347788899999999999999999976421 1 22223333
Q ss_pred HHHHHHh-ccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcC-cCCCCCCcc
Q 012908 332 IGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSM-PRVDEPLKC 405 (453)
Q Consensus 332 ~~~ll~~-~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~-~~~~~~~~C 405 (453)
++.+++. ..+...+++..++.|++.++.....+.++.|.+..++.|+..|+.. ++..+|+.+.+. .+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~------ 370 (406)
T PRK11551 297 ASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLAL------ 370 (406)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhcc------
Confidence 3333332 2233346667788899998889999999999999999999998864 566677777665 221
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 012908 406 EGSICYFLTSMIMSGLCIVAVILSMILV 433 (453)
Q Consensus 406 ~G~~Cy~~~f~i~~~~~~~~~~l~l~l~ 433 (453)
.+-|...+.+.....+++.++++.+.
T Consensus 371 --~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (406)
T PRK11551 371 --GRSTVGVIGASIPVILVAALAALLLV 396 (406)
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 12366677777666666666665443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.3e-09 Score=111.53 Aligned_cols=193 Identities=14% Similarity=0.111 Sum_probs=118.4
Q ss_pred CCHHHHhhcHHHHHHHHHHHhhccccceeecchHHHHH-HhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCc
Q 012908 242 FTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYP 318 (453)
Q Consensus 242 ~t~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~-alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~ 318 (453)
..+++.++++.+|.+++..++.......+...+....+ .+|++... ...++..++..+|+++.|+++||+.+|+...
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~ 331 (465)
T TIGR00894 252 LPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLS 331 (465)
T ss_pred CCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 35789999999999999888776655555555555554 46776543 3667889999999999999999998765444
Q ss_pred hhHHH--HHHHHHHHHHH--HHHhc-c-CchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhhhhH--
Q 012908 319 RPVAM--AVAQFVMAIGH--IFLGM-G-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAG-- 390 (453)
Q Consensus 319 r~~~l--~~~~~~~~~~~--ll~~~-~-~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~ig-- 390 (453)
|.... .........+. +.... . ......+...+.+.++|......-....|..+ ++.|...|+...+..+|
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~ 410 (465)
T TIGR00894 332 LTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGL 410 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHH
Confidence 43221 11111111111 11111 1 22222334444455555555444445556665 68999999876544444
Q ss_pred --hhhhcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 012908 391 --SIFTSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYS 441 (453)
Q Consensus 391 --~~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r~r~~y~ 441 (453)
+++.+. .+.+ +.+-|+..|.+.+++++++.++...+...++..++
T Consensus 411 i~p~l~g~~~~~~------~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~w~ 458 (465)
T TIGR00894 411 IASTLAGNILSQD------SKNVWLIVFLIMAFVNILCVIFYLIFGSAERQDWA 458 (465)
T ss_pred HHHHhhheeeCCC------CchHHHHHHHHHHHHHHHHHHHeeeeecceecCCC
Confidence 444443 2211 12459999999999999988877765555544444
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=7e-09 Score=106.84 Aligned_cols=173 Identities=15% Similarity=0.090 Sum_probs=114.1
Q ss_pred cHHHHHHHHHHHhhccccceeecchHHHHHH-hCCChh--hHHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHH
Q 012908 250 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVA 326 (453)
Q Consensus 250 s~~FWll~~~~~~~~g~gl~~i~n~~~i~~a-lg~~~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~ 326 (453)
++.+|++.+..++.......+.+-.....++ .|.+.. ...++++.+++.+||+..|.++||+++|+. +...
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~------l~~~ 277 (394)
T PRK03699 204 GIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRI------LTVL 277 (394)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhH------HHHH
Confidence 3567888877777654433444455566644 577754 347889999999999999999999876421 1222
Q ss_pred HHHHHHHHHHHh-ccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH----hhhhhhHhhhhcC-cCCC
Q 012908 327 QFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL----TLANPAGSIFTSM-PRVD 400 (453)
Q Consensus 327 ~~~~~~~~ll~~-~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~----~la~~ig~~l~~~-~~~~ 400 (453)
..+.++..+++. ..+...+.+...+.|+++|..++...+...+... ++.++.+|.+ .++..+||.+.+. .+..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~ 356 (394)
T PRK03699 278 AGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHF 356 (394)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 222333333332 2333345567788899999999988888887654 5666666665 4666677776664 2221
Q ss_pred CCCcccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012908 401 EPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 438 (453)
Q Consensus 401 ~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r~r~ 438 (453)
.++.+|++..++++++.++.+.+.+-.||
T Consensus 357 ---------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (394)
T PRK03699 357 ---------GLQAALLTANGLYAVVFVMCILLGFVSKH 385 (394)
T ss_pred ---------CchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 27889999998888888777666655555
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2e-08 Score=103.88 Aligned_cols=148 Identities=15% Similarity=0.145 Sum_probs=92.3
Q ss_pred CHHHHhhcHHHHHHHHHHH---hhccccceeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCC
Q 012908 243 TLTQALIKADFWLIFFSLL---LGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAY 317 (453)
Q Consensus 243 t~~~~l~s~~FWll~~~~~---~~~g~gl~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~ 317 (453)
+.++.++++.+|.+...+. +..+....+.+......++.|++... ...++..+++.+|++.+|.++||++||+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~-- 297 (426)
T PRK12307 220 SMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKK-- 297 (426)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--
Confidence 4567888888886554332 22233223445566667777876543 3678889999999999999999997642
Q ss_pred chhHHHHHHHHHHHHHHHHHh-ccCchhHHHHHHHHHhhh--hhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhH
Q 012908 318 PRPVAMAVAQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGY--GAHWAIVPAAASELFGLKKFGALYNFLT----LANPAG 390 (453)
Q Consensus 318 ~r~~~l~~~~~~~~~~~ll~~-~~~~~~l~~~~~liG~~y--G~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig 390 (453)
.+....++..+..+++. ........+...+.|+.+ ++..++.|.++.|.|+.++.|+..|++. ++.++|
T Consensus 298 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~g 373 (426)
T PRK12307 298 ----TFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFN 373 (426)
T ss_pred ----HHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHH
Confidence 12222222223322222 222222333444555443 3456788999999999999999888753 666777
Q ss_pred hhhhcC
Q 012908 391 SIFTSM 396 (453)
Q Consensus 391 ~~l~~~ 396 (453)
|.+.+.
T Consensus 374 p~~~g~ 379 (426)
T PRK12307 374 SMAATW 379 (426)
T ss_pred HHHHHH
Confidence 776654
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.5e-08 Score=101.97 Aligned_cols=175 Identities=13% Similarity=0.052 Sum_probs=111.1
Q ss_pred HHHhhcHHHHHHHHHHHhhccccceeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHH
Q 012908 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVA 322 (453)
Q Consensus 245 ~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~ 322 (453)
++.++++.+|.+.+..++....-.........+.+++|++..+ ...++..+++.+|++..|+++||++||+.. + +.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~-~-~~ 293 (402)
T TIGR00897 216 TILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTV-R-WF 293 (402)
T ss_pred HHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH-H-HH
Confidence 4578899999988877766554444455555666778887654 366788899999999999999999764321 1 11
Q ss_pred HHHHHHHHHHHHHHHh---ccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhc
Q 012908 323 MAVAQFVMAIGHIFLG---MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTS 395 (453)
Q Consensus 323 l~~~~~~~~~~~ll~~---~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~ 395 (453)
..+...+..+....+. ......+++..++.|+++++... ....++|.+ .++.|+.+|+.. ++..+||++.+
T Consensus 294 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g 371 (402)
T TIGR00897 294 GGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAV 371 (402)
T ss_pred HHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111111111 11223455678888998888654 345667764 589999999864 55556666665
Q ss_pred C-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHH
Q 012908 396 M-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 432 (453)
Q Consensus 396 ~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l 432 (453)
. .+. . -+...|.+.+++.+++.++..++
T Consensus 372 ~l~~~--------~-g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 372 LFIGF--------F-GAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHhh--------c-chHHHHHHHHHHHHHHHHHHHHh
Confidence 4 222 1 17788888887877777666543
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.7e-09 Score=110.73 Aligned_cols=174 Identities=13% Similarity=0.108 Sum_probs=110.4
Q ss_pred CCHHHHhhcHHHHHHHHHHHhhccccceeecchHHHHHHhCCChhhHHHHHHHHhhhhccccccchhhhhhhccCCchhH
Q 012908 242 FTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 321 (453)
Q Consensus 242 ~t~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~ 321 (453)
.+.+++++++++|...+...+.........+......+.++.+. .....+.++....|+++.|++.||++||+
T Consensus 314 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~l~dr~grr~------ 386 (505)
T TIGR00898 314 YSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGNI-YLDLFISGLVELPAKLITLLLIDRLGRRY------ 386 (505)
T ss_pred CcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCh-HHHHHHHHHHHHHHHHHHHHHHHHhCCHH------
Confidence 47889999999998877766544432222222222223334332 22344667788899999999999997742
Q ss_pred HHHHHHHHHHHHHHHHhc-cCc--hhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhh
Q 012908 322 AMAVAQFVMAIGHIFLGM-GWP--GAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFT 394 (453)
Q Consensus 322 ~l~~~~~~~~~~~ll~~~-~~~--~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~ 394 (453)
.+.+..++.+++.+++.. ... ........+.+++.+..+.+...+++|+|+.+.-++-.|+.. ++..++|++.
T Consensus 387 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~ 466 (505)
T TIGR00898 387 TMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLV 466 (505)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHH
Confidence 233344444444444332 222 234456677788889999999999999999888888777754 6666777665
Q ss_pred cCcCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHH
Q 012908 395 SMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 432 (453)
Q Consensus 395 ~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l 432 (453)
+. +. .-+..++.+.+++++++.++.+++
T Consensus 467 ~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~l 494 (505)
T TIGR00898 467 YL-GE---------KWLFLPLVLFGGLALLAGILTLFL 494 (505)
T ss_pred HH-HH---------HHHhhHHHHHHHHHHHHHHHHHcC
Confidence 52 11 114567777777777776665543
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.6e-08 Score=102.78 Aligned_cols=171 Identities=15% Similarity=0.096 Sum_probs=102.6
Q ss_pred cHHHHHHHHHHHhhccccceeecchHHHHHHhCCChh--hHHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHH
Q 012908 250 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 327 (453)
Q Consensus 250 s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~ 327 (453)
.+.+|.+++.++........+.+....+.+..|++.. ....++..+.+.+|+++.|+++||++||+. +.+..
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~------~~~~~ 356 (481)
T TIGR00879 283 RRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPL------LLIGA 356 (481)
T ss_pred HHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH------HHHHH
Confidence 3445555544444333333334444555567787763 336778889999999999999999977421 12223
Q ss_pred HHHHHHHHHHh-----ccC------chhHHHHHHHHHhhhhhhc-chhHHHHHHhhcccchhhhhhhHh----hhhhhHh
Q 012908 328 FVMAIGHIFLG-----MGW------PGAMYVGTLLIGLGYGAHW-AIVPAAASELFGLKKFGALYNFLT----LANPAGS 391 (453)
Q Consensus 328 ~~~~~~~ll~~-----~~~------~~~l~~~~~liG~~yG~~~-~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~ 391 (453)
++++++.+++. ... .........+.+.++|..+ .+...+++|.++.++.|+..|+.. ++..+++
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~ 436 (481)
T TIGR00879 357 AGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVG 436 (481)
T ss_pred HHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344433322 111 1123334455555666555 445556699999999999999874 5555666
Q ss_pred hhhcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHHHh
Q 012908 392 IFTSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHR 435 (453)
Q Consensus 392 ~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r 435 (453)
.+.+. .+. ..++.+|.+.+++++++.++.+.+..+
T Consensus 437 ~~~~~~~~~---------~~~~~~f~~~~~~~~~~~i~~~~~~~~ 472 (481)
T TIGR00879 437 FLFPTMLES---------IGVGGVFIFFGGLNVLGLIFVYFFLPE 472 (481)
T ss_pred HHHHHHHHh---------cCccceehhHHHHHHHHHHHHheeccc
Confidence 55553 221 137778888888888887777654433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.1e-08 Score=99.48 Aligned_cols=142 Identities=14% Similarity=0.166 Sum_probs=98.1
Q ss_pred HHHHhCCChhhHHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHhh
Q 012908 277 MSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLG 355 (453)
Q Consensus 277 i~~alg~~~~~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~-~~~~~l~~~~~liG~~ 355 (453)
..++.|.+......+++.++..+||+..|.+.||+++|+ .+.....++.++.+++.. .+...+.+..++.|++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 315 (399)
T PRK05122 242 YYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLR------VAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFG 315 (399)
T ss_pred HHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHH------HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 345556554455678889999999999999999986532 223333444444444332 3334566678899999
Q ss_pred hhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHH
Q 012908 356 YGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSM 430 (453)
Q Consensus 356 yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l 430 (453)
+|..+..+...+.|.+..++.|+.+|+.. ++..+++.+.+. .+. .-|+.+|.+.+++++++.++..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---------~g~~~~~~~~~~~~~~~~~~~~ 386 (399)
T PRK05122 316 FSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW---------FGYPSIFLAAALAALLGLALTW 386 (399)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------cCHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888899999899999998864 455556665554 121 1299999999888888776665
Q ss_pred HHH
Q 012908 431 ILV 433 (453)
Q Consensus 431 ~l~ 433 (453)
.+.
T Consensus 387 ~~~ 389 (399)
T PRK05122 387 LLY 389 (399)
T ss_pred Hhc
Confidence 543
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.7e-08 Score=100.32 Aligned_cols=170 Identities=9% Similarity=0.086 Sum_probs=109.9
Q ss_pred HHHhhcHHHHHHHHHHHhhccccceeecchHHHHHH-hCCChh--hHHHHHHHHhhhhccccccchhhhhhhccCCchhH
Q 012908 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 321 (453)
Q Consensus 245 ~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~a-lg~~~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~ 321 (453)
++.+|++.+|..++..++......+..+...+..++ .|.+.. ....+++++.+.+|++..|.++||.++| + .
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~----~-~ 273 (390)
T PRK03545 199 PLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSG----F-L 273 (390)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchh----H-H
Confidence 467888999887776665544444444445555565 466654 3477889999999999999999987542 1 1
Q ss_pred HHHHHHHHHHHHHHHH--hccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhh----HhhhhhhHhhhhc
Q 012908 322 AMAVAQFVMAIGHIFL--GMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNF----LTLANPAGSIFTS 395 (453)
Q Consensus 322 ~l~~~~~~~~~~~ll~--~~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~----~~la~~ig~~l~~ 395 (453)
.....+..++.+++ ...+...+++..++.|++++.........+.+... ++.|+-.|+ ..++.++|+.+.+
T Consensus 274 --~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G 350 (390)
T PRK03545 274 --LIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGN 350 (390)
T ss_pred --HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222222222 12333356668888899988777777788888765 566665554 3467777887766
Q ss_pred C-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 012908 396 M-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 431 (453)
Q Consensus 396 ~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~ 431 (453)
. .+.. -++..|.+.+.+.+++.+....
T Consensus 351 ~~~~~~---------g~~~~~~~~~~~~~~~~~~~~~ 378 (390)
T PRK03545 351 QVSLHL---------GLSSIGYVGAALALAALVWSIL 378 (390)
T ss_pred HHHhcc---------ChhHHHHHHHHHHHHHHHHHHH
Confidence 5 3322 3888998888888777766543
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-08 Score=103.22 Aligned_cols=139 Identities=9% Similarity=0.036 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhhccccceeecchHHHHHHhCCChh--hHHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHH
Q 012908 251 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQF 328 (453)
Q Consensus 251 ~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~ 328 (453)
+.+|.++...++.......+.+....+.++.|.+.. ....++.+++..+|++.+|+++||+++| + .+....+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~--~~~~~~~ 323 (398)
T TIGR00895 250 RITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR----V--TALLLLL 323 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH----H--HHHHHHH
Confidence 445555555554433332333333455566777654 3478888999999999999999998764 1 1122222
Q ss_pred HHHHHHHHHh-ccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhc
Q 012908 329 VMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTS 395 (453)
Q Consensus 329 ~~~~~~ll~~-~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~ 395 (453)
......++.. ..+...+++..++.|+++|..+....+.++|.++.++-|+.+|+.. ++..+|+.+.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G 395 (398)
T TIGR00895 324 GAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAG 395 (398)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 2222222222 3344457778899999999999999999999999999898888764 55666665543
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.6e-08 Score=105.30 Aligned_cols=163 Identities=10% Similarity=0.112 Sum_probs=100.2
Q ss_pred HhhcHHHHHHHHHHHhhccccceeecchHHHHHHh--CCChh--hHHHHHHHHhhhhccccccchhhhhhhccCCchhHH
Q 012908 247 ALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSL--GYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVA 322 (453)
Q Consensus 247 ~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~al--g~~~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~ 322 (453)
.++++.+|...+.+++..+.-..+...+.++.++. |.+.. ....++..+++.+||+..|+++||+++|+. .
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~-----~ 312 (412)
T TIGR02332 238 EIFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKH-----H 312 (412)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHH-----H
Confidence 34578899999888887766556677888888875 44433 336788999999999999999999976421 1
Q ss_pred HHHHHHHHHHHHHHHhccCchhHH-HHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcC-
Q 012908 323 MAVAQFVMAIGHIFLGMGWPGAMY-VGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSM- 396 (453)
Q Consensus 323 l~~~~~~~~~~~ll~~~~~~~~l~-~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~- 396 (453)
+....++..++.++.......... .+..+.+++......+......|.|+.|+.|+-+|+.. ++..++|.+.+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i 392 (412)
T TIGR02332 313 TALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGIL 392 (412)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccc
Confidence 112222333333222122111222 22222233332233344455578899999999888864 667777777765
Q ss_pred cCCCCCCcccCCcccHHHHHHHHHHH
Q 012908 397 PRVDEPLKCEGSICYFLTSMIMSGLC 422 (453)
Q Consensus 397 ~~~~~~~~C~G~~Cy~~~f~i~~~~~ 422 (453)
.+. .+.|+.+|.+.++..
T Consensus 393 ~~~--------~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 393 KDA--------TGSFNSGLWFVAALL 410 (412)
T ss_pred ccc--------CCCCchhHHHHHHHH
Confidence 332 234888887766543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.7e-08 Score=99.56 Aligned_cols=147 Identities=15% Similarity=0.135 Sum_probs=97.5
Q ss_pred HHHhhcHHHHHHHHHHHhhccccceeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHH
Q 012908 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVA 322 (453)
Q Consensus 245 ~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~ 322 (453)
++.+|++.+|.+.+..++..+.-..+...+....++.|.+... ...+++.+...+||+..|++.||+++++ ..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~-----~~ 265 (355)
T TIGR00896 191 VRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQR-----GI 265 (355)
T ss_pred chhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccch-----HH
Confidence 4567889999887776665555455556667777888877543 4888999999999999999999985432 12
Q ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcc-cchhhhhhhHh----hhhhhHhhhhcC
Q 012908 323 MAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGL-KKFGALYNFLT----LANPAGSIFTSM 396 (453)
Q Consensus 323 l~~~~~~~~~~~ll~~~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~-k~fg~~yg~~~----la~~ig~~l~~~ 396 (453)
+.+..++++++.+.+.........+..++.|+++|..+.+..+.+.+.+.. ++.|+.+|+.. ++..+||.+.+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~ 344 (355)
T TIGR00896 266 VAVLAVLQLVGLCGLLFAPMHGLWAWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGV 344 (355)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233334444444433332222233356788999999999888887776654 45677777753 444566665553
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.2e-07 Score=95.26 Aligned_cols=141 Identities=13% Similarity=0.089 Sum_probs=98.8
Q ss_pred HHHHHhCCChhhHHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHh
Q 012908 276 QMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGL 354 (453)
Q Consensus 276 ~i~~alg~~~~~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~-~~~~~l~~~~~liG~ 354 (453)
...++.|.+......+..++.+.+|++..|.+.||+++|+.. .....++.++.+++.. .+...+++..++.|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 314 (392)
T PRK12382 241 LYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVA------IVSLLVETVGLLLLWLAPTAWVALAGAALTGA 314 (392)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeh------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344556665555566778888999999999999999775322 2223333344433322 333345667888999
Q ss_pred hhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHH
Q 012908 355 GYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILS 429 (453)
Q Consensus 355 ~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~ 429 (453)
++|..+...+..+.|.++.|+.|+.+|+.. ++..+|+.+.+. .+.. -|+..|.+.+++.+++.++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~---------g~~~~~~~~~~~~~~~~~~~ 385 (392)
T PRK12382 315 GCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF---------GYPSVFLAGAISAVLGIIVT 385 (392)
T ss_pred HHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CchHHHHHHHHHHHHHHHHH
Confidence 999988888999999999999999999864 556677766664 2221 29999999988888777665
Q ss_pred HH
Q 012908 430 MI 431 (453)
Q Consensus 430 l~ 431 (453)
+.
T Consensus 386 ~~ 387 (392)
T PRK12382 386 IL 387 (392)
T ss_pred Hh
Confidence 54
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-07 Score=101.33 Aligned_cols=152 Identities=13% Similarity=0.078 Sum_probs=81.8
Q ss_pred cchHHHHHHhCCChhh--------------HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHH
Q 012908 272 DNLGQMSQSLGYDNTH--------------IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFL 337 (453)
Q Consensus 272 ~n~~~i~~alg~~~~~--------------~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~ 337 (453)
.+...+.+++|++... ....+..++...|.+++|+++||++||. .. .+..+++.++..++
T Consensus 309 ~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~-----~l-~~~~~~~~~~~~~l 382 (502)
T TIGR00887 309 LNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKP-----IQ-LMGFFILTVLFFVL 382 (502)
T ss_pred cccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchh-----HH-HHHHHHHHHHHHHH
Confidence 3456677778875321 0344455667779999999999998852 11 22233333332222
Q ss_pred h--cc--CchhHHHHHHHHHhhhh-hhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcC-cCCCCCCc-cc
Q 012908 338 G--MG--WPGAMYVGTLLIGLGYG-AHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSM-PRVDEPLK-CE 406 (453)
Q Consensus 338 ~--~~--~~~~l~~~~~liG~~yG-~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~-~~~~~~~~-C~ 406 (453)
. .. ..........+..+.++ +..++....++|+|..+.-|+-.|+.. ++..+++++++. .++++.+. -.
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 462 (502)
T TIGR00887 383 GFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYP 462 (502)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccc
Confidence 1 11 11111111222222222 234456677899999999999999864 555666666554 22211000 00
Q ss_pred CCcccHHHHHHHHHHHHHHHHHH
Q 012908 407 GSICYFLTSMIMSGLCIVAVILS 429 (453)
Q Consensus 407 G~~Cy~~~f~i~~~~~~~~~~l~ 429 (453)
...-+..+|.+.+++++++.+..
T Consensus 463 ~~~~~~~~~~i~~~~~~~~~i~~ 485 (502)
T TIGR00887 463 TGIWMGHVLEIFALFMFLGILFT 485 (502)
T ss_pred ccccchHHHHHHHHHHHHHHHHh
Confidence 01124668888888888776644
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.6e-09 Score=103.39 Aligned_cols=145 Identities=17% Similarity=0.282 Sum_probs=93.1
Q ss_pred HHHHhhcHHHHHHHHHHHhhccccceeecchHHH-HHHhCCC-hhhH--HHHHHHHhhhhccccccchhhhhhhccCCch
Q 012908 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQM-SQSLGYD-NTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 319 (453)
Q Consensus 244 ~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i-~~alg~~-~~~~--~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r 319 (453)
+++..+++.+|.+++..++....-..+....... .+..|.+ .... ..++.++...++++..|.++||+++++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 275 (352)
T PF07690_consen 199 FKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRR--- 275 (352)
T ss_dssp CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH---
T ss_pred cccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH---
Confidence 4567777888855555544432222233333332 4566777 3333 6888889999999999999999866321
Q ss_pred hHHHHHHHHHHHHHHHHHhcc-CchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhhhhHh
Q 012908 320 PVAMAVAQFVMAIGHIFLGMG-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGS 391 (453)
Q Consensus 320 ~~~l~~~~~~~~~~~ll~~~~-~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~ig~ 391 (453)
.........+..++..+.... ++...+...++.|+++|..+......+.|.++.++.|+.+|+......+|.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 348 (352)
T PF07690_consen 276 LLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGG 348 (352)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 122222222222222211122 234566688899999999999999999999999999999999875544443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.5e-07 Score=98.45 Aligned_cols=148 Identities=11% Similarity=0.141 Sum_probs=88.5
Q ss_pred cchHHHHH-HhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHH--HHHhc-cCchhH
Q 012908 272 DNLGQMSQ-SLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGH--IFLGM-GWPGAM 345 (453)
Q Consensus 272 ~n~~~i~~-alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~--ll~~~-~~~~~l 345 (453)
..+.++.+ .+|++... ...+...+...+|++.+|+++||++||+. .. .........+. +.... .....+
T Consensus 271 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (490)
T PRK10642 271 TYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPF----VI-LGSVALFVLAIPAFILINSNVIGLI 345 (490)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH----HH-HHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 34455554 45776542 35567778899999999999999988531 11 11111111111 11112 223345
Q ss_pred HHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhh----hHhhhhhhHhhhhcC-cCCCCCCcccCCcccHHHHHHHHH
Q 012908 346 YVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYN----FLTLANPAGSIFTSM-PRVDEPLKCEGSICYFLTSMIMSG 420 (453)
Q Consensus 346 ~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg----~~~la~~ig~~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~ 420 (453)
+++.++.|+++|..++..+.++.|+|..+.-|+-.| +..++..++|++.+. .+. .+..+.++.+...
T Consensus 346 ~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~--------~~~~~~~~~~~~~ 417 (490)
T PRK10642 346 FAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVES--------TQNLMMPAYYLMV 417 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCCchHHHHHHHH
Confidence 667788899999999999999999999887666444 444555666766654 111 1124555555555
Q ss_pred HHHHHHHHHHHH
Q 012908 421 LCIVAVILSMIL 432 (453)
Q Consensus 421 ~~~~~~~l~l~l 432 (453)
.++++.+..+++
T Consensus 418 ~~~i~~~~~~~~ 429 (490)
T PRK10642 418 VAVIGLITGVTM 429 (490)
T ss_pred HHHHHHHHHHHh
Confidence 555555555443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.4e-07 Score=91.44 Aligned_cols=130 Identities=22% Similarity=0.363 Sum_probs=95.7
Q ss_pred HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHH
Q 012908 288 IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAA 366 (453)
Q Consensus 288 ~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i 366 (453)
...++.++.+.+|++.+|.++||+++|+. .+.....+..++.+++.. .+...+++...+.|++.|..+......
T Consensus 215 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 289 (352)
T cd06174 215 LLLSLFGLGGILGALLGGLLSDRLGRRRL-----LLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTL 289 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHH
Confidence 36677888899999999999999987532 234444555555544433 334567789999999999999999999
Q ss_pred HHHhhcccchhhhhhhHh----hhhhhHhhhhcCcCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHH
Q 012908 367 ASELFGLKKFGALYNFLT----LANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSM 430 (453)
Q Consensus 367 ~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l 430 (453)
+.|.+..++.|+.+|+.. ++..+++.+.+.... ...|+..|.+.+++++++.++..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~--------~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 290 ASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD--------TGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccCcchHHHHHHHHHHHHHHHhe
Confidence 999999999999999864 445555555543111 23489999999988888777654
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.1e-07 Score=97.76 Aligned_cols=145 Identities=14% Similarity=0.129 Sum_probs=97.7
Q ss_pred HHHhhcHHHHHHHHHHHhhccccceeecchHHHHHH-hCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhH
Q 012908 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 321 (453)
Q Consensus 245 ~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~a-lg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~ 321 (453)
.+.+++++||...+..++.........+...+..++ .|+++.+ ...+..++...+|++.+|.+.||+++| .
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~------~ 322 (485)
T TIGR00711 249 LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPR------K 322 (485)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH------H
Confidence 467889999988776665544333334445555555 5777543 366778889999999999999998663 1
Q ss_pred HHHHHHHHHHHHHHHHh--ccC---chhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhh
Q 012908 322 AMAVAQFVMAIGHIFLG--MGW---PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSI 392 (453)
Q Consensus 322 ~l~~~~~~~~~~~ll~~--~~~---~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~ 392 (453)
.+.+...+++++.+++. ... ...+....++.|+++|..+......+.+.++.++.|+-.|+.. ++..+|+.
T Consensus 323 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~ 402 (485)
T TIGR00711 323 LVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTA 402 (485)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 23444555555555443 111 2245667888999999998877788888899899898888753 55555555
Q ss_pred hhc
Q 012908 393 FTS 395 (453)
Q Consensus 393 l~~ 395 (453)
+.+
T Consensus 403 i~g 405 (485)
T TIGR00711 403 LIT 405 (485)
T ss_pred HHH
Confidence 443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-07 Score=93.80 Aligned_cols=146 Identities=20% Similarity=0.185 Sum_probs=99.3
Q ss_pred HHHHhhcHHHHHHHHHHHhhccccceeecchHHHH-HH-hCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCch
Q 012908 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMS-QS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 319 (453)
Q Consensus 244 ~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~-~a-lg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r 319 (453)
.++.++++.+|.+.+..++..........+..+.. ++ +|.++.. ...+..++...+|++..|.++||.+|+ +
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~ 278 (365)
T TIGR00900 203 IKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRM----A 278 (365)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh----H
Confidence 45678889999888877766655554443444443 43 5766543 367778889999999999999887653 2
Q ss_pred hHHHHHHHHHHHHHHHHHhccC--chhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhh
Q 012908 320 PVAMAVAQFVMAIGHIFLGMGW--PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIF 393 (453)
Q Consensus 320 ~~~l~~~~~~~~~~~ll~~~~~--~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l 393 (453)
.+.....+..++.+++.... ...+++..++.|+++|........++.|.+..++.|+.+|+.. ++..+|+.+
T Consensus 279 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~ 356 (365)
T TIGR00900 279 --LMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLIL 356 (365)
T ss_pred --HHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333334443333222 3356678889999999999999999999999999899888863 555555554
Q ss_pred hc
Q 012908 394 TS 395 (453)
Q Consensus 394 ~~ 395 (453)
.+
T Consensus 357 ~g 358 (365)
T TIGR00900 357 AG 358 (365)
T ss_pred HH
Confidence 43
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=98.75 E-value=1e-07 Score=106.31 Aligned_cols=178 Identities=16% Similarity=0.152 Sum_probs=111.7
Q ss_pred HHHhhcHHHHHHHHHHHhhcccc---ceeecch-HHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCc
Q 012908 245 TQALIKADFWLIFFSLLLGSGSG---LTVIDNL-GQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYP 318 (453)
Q Consensus 245 ~~~l~s~~FWll~~~~~~~~g~g---l~~i~n~-~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~ 318 (453)
.++-.++..|.++++++++.... ..+++.+ .++.+++|.+... .+.+++.++..+|.+++|+++||++||+.
T Consensus 157 ~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~-- 234 (742)
T TIGR01299 157 QECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQC-- 234 (742)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH--
Confidence 44445677887776665554322 2223333 3344567877543 47889999999999999999999988532
Q ss_pred hhHHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhhhhHhhhhcC-
Q 012908 319 RPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSM- 396 (453)
Q Consensus 319 r~~~l~~~~~~~~~~~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~ig~~l~~~- 396 (453)
+.+..++..++.++... .+...+.+.-++.|++.|+.+.+.+.+++|++..++-|+.++++.....+|..+...
T Consensus 235 ----lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~l 310 (742)
T TIGR01299 235 ----LLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAM 310 (742)
T ss_pred ----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333433444333332 334567788999999999999999999999999999999988875444443332211
Q ss_pred ----cCCCCCC----cccCCcccHHHHHHHHHHHHHHHHH
Q 012908 397 ----PRVDEPL----KCEGSICYFLTSMIMSGLCIVAVIL 428 (453)
Q Consensus 397 ----~~~~~~~----~C~G~~Cy~~~f~i~~~~~~~~~~l 428 (453)
....+-. .......+|..|++.+..+++++++
T Consensus 311 a~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~ 350 (742)
T TIGR01299 311 AWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGA 350 (742)
T ss_pred HHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHH
Confidence 0000000 0112235788887766655554443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.7e-07 Score=94.49 Aligned_cols=132 Identities=14% Similarity=0.158 Sum_probs=91.1
Q ss_pred HHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHHH
Q 012908 289 FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAA 367 (453)
Q Consensus 289 ~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~ 367 (453)
..++.++.+.+++..+|.++||+++++. +.....+..++.+.+.. .++..+++..++.|+++|..+......+
T Consensus 263 ~~~~~~l~~~~~~~~~g~l~dr~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 336 (408)
T PRK09874 263 IASVPGVAALLSAPRLGKLGDRIGPEKI------LITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLL 336 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchh------HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHH
Confidence 4556678889999999999999876421 12223333333333322 3344566677889999999999998998
Q ss_pred HHhhcccchhhhhhhH----hhhhhhHhhhhcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHHHh
Q 012908 368 SELFGLKKFGALYNFL----TLANPAGSIFTSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHR 435 (453)
Q Consensus 368 s~~FG~k~fg~~yg~~----~la~~ig~~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r 435 (453)
.+....++.|+.+|+. .++..+|+.+.+. .+. .-|+.+|.+.+++.+++.++......|
T Consensus 337 ~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~---------~g~~~~f~~~~~~~l~~~~~~~~~~~~ 400 (408)
T PRK09874 337 VYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN---------YGFRAVFLVTAGVVLFNAVYSWNSLRR 400 (408)
T ss_pred HHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh---------cchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888764 4666677766553 221 139999999999988888777554433
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.2e-07 Score=93.62 Aligned_cols=139 Identities=17% Similarity=0.160 Sum_probs=85.3
Q ss_pred CHHHHhhcHHHHHHHHHHHhhccccceeecchHHHHHH-hCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCch
Q 012908 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 319 (453)
Q Consensus 243 t~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~a-lg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r 319 (453)
..++.++++++|.+.+.+++..+....+.+...+..++ +|.++.+ .+.++..+.+.+||+.+|+++||+++|+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~--- 293 (366)
T TIGR00886 217 DQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARK--- 293 (366)
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchh---
Confidence 34667889999999998888777666666666666665 5766543 37788899999999999999999987532
Q ss_pred hHHHHHHHHHHHHHHHHHhcc---CchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhh
Q 012908 320 PVAMAVAQFVMAIGHIFLGMG---WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLA 386 (453)
Q Consensus 320 ~~~l~~~~~~~~~~~ll~~~~---~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la 386 (453)
+.........+...+.+... +.........+.++.+|...+...+++++++- +|.|+.+|++...
T Consensus 294 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~ 361 (366)
T TIGR00886 294 -LLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAI 361 (366)
T ss_pred -HHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHh
Confidence 22222222222222222222 22222223333344444444444455556664 8999999987543
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.3e-08 Score=108.02 Aligned_cols=128 Identities=19% Similarity=0.146 Sum_probs=89.9
Q ss_pred HHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhcc-CchhHHHHHHHHHhhhhhhcchhHHHHH
Q 012908 290 VSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMG-WPGAMYVGTLLIGLGYGAHWAIVPAAAS 368 (453)
Q Consensus 290 Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~~-~~~~l~~~~~liG~~yG~~~~~~p~i~s 368 (453)
..+.++....|.+++|+++||++||+ .+.+..++.+++.+++... ....+.+..++.|++.++.+++...+++
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr~GRr~------~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~a 674 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDKIGRLR------MLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTV 674 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888999999999999998752 2344444555544444332 2334555667889989999999999999
Q ss_pred HhhcccchhhhhhhHh----hhhhhHhhhhcCcCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHH
Q 012908 369 ELFGLKKFGALYNFLT----LANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 432 (453)
Q Consensus 369 ~~FG~k~fg~~yg~~~----la~~ig~~l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l 432 (453)
|+|..+.-|+-+|+.. +|..+||++.+.... . .+..+|++.+++.+++.++.+.+
T Consensus 675 El~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~--------~-~~~~pf~i~a~~lll~~ll~~~L 733 (742)
T TIGR01299 675 ELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG--------I-TKAAPILFASAALACGGLLALKL 733 (742)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------h-hhHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999888864 666666666553110 1 14678888887777777766655
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.5e-07 Score=94.42 Aligned_cols=174 Identities=13% Similarity=0.139 Sum_probs=98.9
Q ss_pred HHHHhhcHHHHHHHHHHHhhcccccee-ecchHHHHHHhCCChhhH--HHHHHHH-hhhhccccccchhhhhhhccCCch
Q 012908 244 LTQALIKADFWLIFFSLLLGSGSGLTV-IDNLGQMSQSLGYDNTHI--FVSMISI-WNFLGRVGGGYFSEIIVRDYAYPR 319 (453)
Q Consensus 244 ~~~~l~s~~FWll~~~~~~~~g~gl~~-i~n~~~i~~alg~~~~~~--~Vsl~si-~n~~GRl~~G~lsD~l~~~~~~~r 319 (453)
.++.+|++++|.+.+..++.......+ ..+.-.+.+++|.+.... ..+..++ ...+|.+++|.+.||+++|+..
T Consensus 202 ~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l-- 279 (402)
T PRK11902 202 LRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSL-- 279 (402)
T ss_pred HHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH--
Confidence 467889999998777655543322211 122223445578876543 3334443 5788999999999999764211
Q ss_pred hHHHHHHHHHHHHHHHHHhcc--CchhHHHHH----HHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhhhhHhhh
Q 012908 320 PVAMAVAQFVMAIGHIFLGMG--WPGAMYVGT----LLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIF 393 (453)
Q Consensus 320 ~~~l~~~~~~~~~~~ll~~~~--~~~~l~~~~----~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~ig~~l 393 (453)
+...+...+..+...++... +...+++.. +..|+.++..+..+..++++.++.++++....+..++..+++.+
T Consensus 280 -~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 358 (402)
T PRK11902 280 -MLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPT 358 (402)
T ss_pred -HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 11111222222222222222 222233333 35677788889999999999999888876333333444433333
Q ss_pred hcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHH
Q 012908 394 TSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILS 429 (453)
Q Consensus 394 ~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~ 429 (453)
.+. .|.. -|+..|.+.+.++++++++.
T Consensus 359 ~G~l~~~~---------G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 359 SGYLVEAY---------GWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHh---------ChHHHHHHHHHHHHHHHHHH
Confidence 222 2221 28888888887777765554
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.2e-07 Score=92.85 Aligned_cols=133 Identities=15% Similarity=0.148 Sum_probs=84.7
Q ss_pred HHHHhhcHHHHHHHHHHHhhccccceeecchHHHHH-HhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchh
Q 012908 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (453)
Q Consensus 244 ~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~-alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~ 320 (453)
.++.++++++|.+.+...+..+....+......+.+ ..|.++.. ...+..++...+|++..|+++||+++|+..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~--- 275 (385)
T TIGR00710 199 FLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLL--- 275 (385)
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH---
Confidence 346678888888777665554443333333344444 56776543 367778899999999999999998764321
Q ss_pred HHHHHHHHHHHHHHHHHhc----c-C-chhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH
Q 012908 321 VAMAVAQFVMAIGHIFLGM----G-W-PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL 383 (453)
Q Consensus 321 ~~l~~~~~~~~~~~ll~~~----~-~-~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~ 383 (453)
.....++.++.+++.. . . ...+.....+.|+++|..+...+..+.|.++ ++-|+-.++.
T Consensus 276 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~ 340 (385)
T TIGR00710 276 ---RMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALF 340 (385)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHH
Confidence 2222233333222211 1 1 1234456778899999999999999999986 5667666654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.9e-07 Score=90.81 Aligned_cols=170 Identities=18% Similarity=0.213 Sum_probs=101.5
Q ss_pred HhhcHHHHHHHHHHHhhccccceeecchHHHHHH-hCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHH
Q 012908 247 ALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 323 (453)
Q Consensus 247 ~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~a-lg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l 323 (453)
.++++++|.++...+++............+..++ .|.++.. .+.++.++++.+||+..|+++||+++++ .+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~------~~ 268 (382)
T PRK10091 195 FLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLR------IA 268 (382)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchh------HH
Confidence 4677888988877666543332333344444543 6776543 4788999999999999999999986632 22
Q ss_pred HHHHHHHHHHHHHHh-cc-CchhHHHHHHHHHhhhhhhcc-hhHHHHHHhhcccchhhhhh--hHhhhhhhHhhhhcC-c
Q 012908 324 AVAQFVMAIGHIFLG-MG-WPGAMYVGTLLIGLGYGAHWA-IVPAAASELFGLKKFGALYN--FLTLANPAGSIFTSM-P 397 (453)
Q Consensus 324 ~~~~~~~~~~~ll~~-~~-~~~~l~~~~~liG~~yG~~~~-~~p~i~s~~FG~k~fg~~yg--~~~la~~ig~~l~~~-~ 397 (453)
.+...++.++.+++. .. ......+...+.++++++... .....+.+.++.++.|...+ ...++..+||.+.+. .
T Consensus 269 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Gp~~~G~l~ 348 (382)
T PRK10091 269 AVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAIGAYCGGMML 348 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 334444455543332 22 222333344455555544332 23345667777677776422 235777777777664 2
Q ss_pred CCCCCCcccCCcccHHHHHHHHHHHHHHHHHHH
Q 012908 398 RVDEPLKCEGSICYFLTSMIMSGLCIVAVILSM 430 (453)
Q Consensus 398 ~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l 430 (453)
|. .+.|+..+.+.++++++++...+
T Consensus 349 ~~--------~~~~~~~~~~~~~~~~~~~~~~~ 373 (382)
T PRK10091 349 TL--------GLAYNYVALPAALLSFAAMSSLL 373 (382)
T ss_pred Hc--------ccCcchHHHHHHHHHHHHHHHHH
Confidence 22 23499999998877766555443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.7e-07 Score=93.17 Aligned_cols=172 Identities=13% Similarity=0.074 Sum_probs=108.8
Q ss_pred HHHHhhcHHHHHHHHHHHhhccccceeecchHHHHHHhCCChhhHHHHHHHHhhhhccccccchhhhhhhccCCchhHHH
Q 012908 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 323 (453)
Q Consensus 244 ~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l 323 (453)
+++.++++++|.+++..++..+.-..+.+-+.++.++.|++... -...++....|-+..|+++||+.|+.+ |....
T Consensus 185 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~~--~~~~~l~~~~g~~g~~~~~d~~~r~~~--r~~~~ 260 (368)
T TIGR00903 185 FGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDIA--GDAVALAILAGLIGVAVIPDRVARAGL--RSIYI 260 (368)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChHH--HHHHHHHHHHHHHHHHHhhHHhhhhhh--HHHHH
Confidence 46789999999999999988777666666678888887776432 222333334455556999999976532 22222
Q ss_pred HHHHHHHHHHHHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcCcC
Q 012908 324 AVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSMPR 398 (453)
Q Consensus 324 ~~~~~~~~~~~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~~~ 398 (453)
....+++++..+++.. ..+........+.|+..+..++.+.++++|.|..++-|+-.|+.. ++..+++.+....-
T Consensus 261 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~ 340 (368)
T TIGR00903 261 RAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI 340 (368)
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence 2222323333333322 223233445556677777787888899999999888888888764 45555555554311
Q ss_pred CCCCCcccCCcccHHHHHHHHHHHHHHHHHH
Q 012908 399 VDEPLKCEGSICYFLTSMIMSGLCIVAVILS 429 (453)
Q Consensus 399 ~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~ 429 (453)
. .++..|.+.++.++++.+..
T Consensus 341 ~----------~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 341 S----------SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred c----------CHHHHHHHHHHHHHHHHHHH
Confidence 0 26777877777777766664
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.1e-07 Score=91.59 Aligned_cols=148 Identities=15% Similarity=0.069 Sum_probs=91.6
Q ss_pred HHHHhhcHH--HHHHHHHHHhhccccceeecchHHHH-HHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCc
Q 012908 244 LTQALIKAD--FWLIFFSLLLGSGSGLTVIDNLGQMS-QSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYP 318 (453)
Q Consensus 244 ~~~~l~s~~--FWll~~~~~~~~g~gl~~i~n~~~i~-~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~ 318 (453)
.++.++++. +|......++......+.......+. +..|.++.. ...++..+.+.++++..|+++||++||+.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-- 287 (394)
T TIGR00883 210 IRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPV-- 287 (394)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH--
Confidence 445555544 77766666555444433444455555 346666543 36778889999999999999999977421
Q ss_pred hhHHHHHHHHHHHHHHHH---Hhc-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH-----hhhhhh
Q 012908 319 RPVAMAVAQFVMAIGHIF---LGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL-----TLANPA 389 (453)
Q Consensus 319 r~~~l~~~~~~~~~~~ll---~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~-----~la~~i 389 (453)
.+....+....+.++ +.. .+...+.+...+.|+++|..++...+.++|.+..++-++-+|+. .++..+
T Consensus 288 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~ 364 (394)
T TIGR00883 288 ---LIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGF 364 (394)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhH
Confidence 111111111122111 111 22234455677889999999999999999999988777766652 244556
Q ss_pred HhhhhcC
Q 012908 390 GSIFTSM 396 (453)
Q Consensus 390 g~~l~~~ 396 (453)
+|.+.+.
T Consensus 365 ~p~~~g~ 371 (394)
T TIGR00883 365 APYIAAA 371 (394)
T ss_pred HHHHHHH
Confidence 6666554
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-06 Score=91.16 Aligned_cols=174 Identities=9% Similarity=0.060 Sum_probs=101.1
Q ss_pred HhhcHHHHHHHHHHHhhccccc-eeecchHHH-HHHhCCChhhH--HHHHHHHhhhhccccccchhhhhhhccCCchhHH
Q 012908 247 ALIKADFWLIFFSLLLGSGSGL-TVIDNLGQM-SQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVA 322 (453)
Q Consensus 247 ~l~s~~FWll~~~~~~~~g~gl-~~i~n~~~i-~~alg~~~~~~--~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~ 322 (453)
.++++++|.+-+........+. +........ .+.+|.++... ...+.++..++|++++|+++||++||+. ..
T Consensus 245 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~----~~ 320 (438)
T PRK09952 245 LLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRV----YI 320 (438)
T ss_pred HHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH----HH
Confidence 5567777766443322222121 122222222 23467665432 3345677888999999999999987522 11
Q ss_pred HHHHHHHHHHHHHH--Hh--ccCch-hHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH-----hhhhhhHhh
Q 012908 323 MAVAQFVMAIGHIF--LG--MGWPG-AMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL-----TLANPAGSI 392 (453)
Q Consensus 323 l~~~~~~~~~~~ll--~~--~~~~~-~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~-----~la~~ig~~ 392 (453)
...++.+++.+. +. ..+.. .+.+...+.|+++|..++..+++++|.|+.|+-++-.|+. .++..++|+
T Consensus 321 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~ 398 (438)
T PRK09952 321 --TGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPF 398 (438)
T ss_pred --HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHH
Confidence 112222222211 11 11222 2334556668999999999999999999988766555553 245666776
Q ss_pred hhcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 012908 393 FTSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 433 (453)
Q Consensus 393 l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~ 433 (453)
+.+. .+.. .+-|+..+...++..+++.+..+.+.
T Consensus 399 i~g~l~~~~-------~~~~~~~~~~~~~~~~i~~v~~~~~~ 433 (438)
T PRK09952 399 IAAALVTYF-------GGSWHSVAIYLLAGCLISAMTALLMK 433 (438)
T ss_pred HHHHHHHhc-------CCCchHHHHHHHHHHHHHHHHHHHcc
Confidence 6554 2211 12488888888888888877766543
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.9e-07 Score=93.06 Aligned_cols=177 Identities=8% Similarity=-0.036 Sum_probs=105.4
Q ss_pred HHHhhcHHHHHHHHHHHhhccccceeecchHHHHHH-hCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhH
Q 012908 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 321 (453)
Q Consensus 245 ~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~a-lg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~ 321 (453)
+..++++.+|.+++..++.... ..+........++ +|.+... ...++.++++.+|++.+|+++|+..+ .|
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~----~~-- 290 (417)
T PRK10489 218 RFLLASPVVGGIALLGGLLTMA-SAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARP----GL-- 290 (417)
T ss_pred HHHHcChHHHHHHHHHHHHHHH-HhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCc----ch--
Confidence 3456777777766554443222 1222334445555 6776543 36678888999999999998886322 12
Q ss_pred HHHHHHHHHHHHHHHHhccC-chhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH----hhhhhhHhhhhcC
Q 012908 322 AMAVAQFVMAIGHIFLGMGW-PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL----TLANPAGSIFTSM 396 (453)
Q Consensus 322 ~l~~~~~~~~~~~ll~~~~~-~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~----~la~~ig~~l~~~ 396 (453)
.+....++++++.+++...+ ...+.+...+.|++.|.......+++.|.+..++.|+.+|+. .++.++|+.+.+.
T Consensus 291 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~ 370 (417)
T PRK10489 291 LMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGG 370 (417)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHH
Confidence 22333444555554443332 224556777788888877777788999999988889988886 3667777777665
Q ss_pred -cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012908 397 -PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTT 437 (453)
Q Consensus 397 -~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r~r 437 (453)
.+.. -++.++.+.++..++..++......++|
T Consensus 371 l~~~~---------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 371 LGAMM---------TPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred HHHHh---------chhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 2211 2566666555444443333333333333
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.5e-06 Score=90.70 Aligned_cols=179 Identities=11% Similarity=-0.020 Sum_probs=101.3
Q ss_pred CHHHHhhcHHHHHHHHHHHhhccccc-eeecchHHHHH-HhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCc
Q 012908 243 TLTQALIKADFWLIFFSLLLGSGSGL-TVIDNLGQMSQ-SLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYP 318 (453)
Q Consensus 243 t~~~~l~s~~FWll~~~~~~~~g~gl-~~i~n~~~i~~-alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~ 318 (453)
++++.++++++|++.+..++....+. .+..-..+..+ .+|.+..+ ...++..+...+++...|+++||++||+
T Consensus 234 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~--- 310 (432)
T PRK10406 234 SLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRT--- 310 (432)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH---
Confidence 46778889999987776655422222 23333444444 46776543 3566777788899999999999998752
Q ss_pred hhHHHHHH-HHHHHHHHHHHhc-c-CchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh-hh----hhhH
Q 012908 319 RPVAMAVA-QFVMAIGHIFLGM-G-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT-LA----NPAG 390 (453)
Q Consensus 319 r~~~l~~~-~~~~~~~~ll~~~-~-~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~-la----~~ig 390 (453)
....... ..+..+..+.... . .+........+.++..|...+..+..++|+|..|+-|+-+|+.+ ++ .+..
T Consensus 311 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~ 389 (432)
T PRK10406 311 -SMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSA 389 (432)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHH
Confidence 1211111 1111111111111 1 12111112223334556666778889999999999999999864 22 2234
Q ss_pred hhhhcCcCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 012908 391 SIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 433 (453)
Q Consensus 391 ~~l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~ 433 (453)
+++....+. .+-|...++..++.++++.+..+.+.
T Consensus 390 p~~~~~l~~--------~g~~~~~~~~~~~~~~i~~~~~~~l~ 424 (432)
T PRK10406 390 EYVALSLKS--------IGMETAFFWYVTLMAVVAFLVSLMLH 424 (432)
T ss_pred HHHHHHHHH--------hCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 443332221 12366777777777777766665543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.6e-07 Score=90.91 Aligned_cols=112 Identities=18% Similarity=0.264 Sum_probs=76.1
Q ss_pred HHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHH-HHHHHHHhccCc-hhHHHHHHHHHh
Q 012908 279 QSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVM-AIGHIFLGMGWP-GAMYVGTLLIGL 354 (453)
Q Consensus 279 ~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~-~~~~ll~~~~~~-~~l~~~~~liG~ 354 (453)
+++|.+..+ ...++.++...+|++..|+++||++||+.. .+..++. +....++..... ..+.+...+.|+
T Consensus 267 ~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (405)
T TIGR00891 267 ADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAY------VCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQM 340 (405)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhh------HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 346776543 477889999999999999999999775321 1222222 111112222222 234455577888
Q ss_pred hhhhhcchhHHHHHHhhcccchhhhhhhH----hhhhhhHhhhhcC
Q 012908 355 GYGAHWAIVPAAASELFGLKKFGALYNFL----TLANPAGSIFTSM 396 (453)
Q Consensus 355 ~yG~~~~~~p~i~s~~FG~k~fg~~yg~~----~la~~ig~~l~~~ 396 (453)
+.++.+++.+..+.|.++.++-|+..|+. .++.++|+.+.+.
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~ 386 (405)
T TIGR00891 341 LVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGAL 386 (405)
T ss_pred HHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999988888875 3566777777664
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.9e-07 Score=91.64 Aligned_cols=185 Identities=14% Similarity=0.171 Sum_probs=109.1
Q ss_pred HHhhcHHHHHHHHHHHhhccccceeecchHHHH--HHhCCChh--hHHHHHHHHhhhhccccccchhhhhhhccCCchhH
Q 012908 246 QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMS--QSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 321 (453)
Q Consensus 246 ~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~--~alg~~~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~ 321 (453)
-.++++--|++-++.++.--.=.. |+.=+|+. |..|++.. ...++++=++...|-+++|++|||+-+.++.|- .
T Consensus 247 YVL~Nk~iW~la~a~vfvYivR~g-i~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~-~ 324 (448)
T COG2271 247 YVLKNKLIWLLALANVFVYVVRYG-INDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPM-A 324 (448)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchH-H
Confidence 357899999998887764322222 23334443 33577644 348999999999999999999999987665543 1
Q ss_pred HHHHHHHHHHHHHHHHhccC-chhHHHHHHHHHh-hhhhhcchhHHHHHHhhccc-chhhhhhhHh----h-hhhhHhhh
Q 012908 322 AMAVAQFVMAIGHIFLGMGW-PGAMYVGTLLIGL-GYGAHWAIVPAAASELFGLK-KFGALYNFLT----L-ANPAGSIF 393 (453)
Q Consensus 322 ~l~~~~~~~~~~~ll~~~~~-~~~l~~~~~liG~-~yG~~~~~~p~i~s~~FG~k-~fg~~yg~~~----l-a~~ig~~l 393 (453)
+++...+..++....++... .....+.-.++|+ =||=. ....+.+--|++| .-|+-=|+.. + |...+.+.
T Consensus 325 ~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPq--mLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~ 402 (448)
T COG2271 325 LIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQ--MLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLP 402 (448)
T ss_pred HHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHH--HHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCc
Confidence 22222222222222222212 2233335555665 35555 4444555555555 4577777763 2 33444444
Q ss_pred hcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 012908 394 TSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHL 443 (453)
Q Consensus 394 ~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r~r~~y~~~ 443 (453)
++. .|. --+...|++..+.++++.++.+.+..++++.+++.
T Consensus 403 ~g~i~d~---------~gW~g~Fi~~~~~a~l~~lll~~~~~~~~~~~~~~ 444 (448)
T COG2271 403 LGYIADT---------WGWDGGFIVLSIAALLAILLLLPVWNAEERKIRDE 444 (448)
T ss_pred ceeeEec---------CCCcchHHHHHHHHHHHHHHHHHHHhhcchhhhhh
Confidence 443 222 12677899999888888888877777777666543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.4e-06 Score=87.23 Aligned_cols=141 Identities=9% Similarity=0.027 Sum_probs=89.8
Q ss_pred HHhhcHHHHHHHHHHHhhccccceeecchHH-HHHH-hCCChhhH--HHHHHHHhhhhccccccchhhhhhhccCCchhH
Q 012908 246 QALIKADFWLIFFSLLLGSGSGLTVIDNLGQ-MSQS-LGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 321 (453)
Q Consensus 246 ~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~-i~~a-lg~~~~~~--~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~ 321 (453)
+.+|++.|+......++.... ....+...+ ..+. +|.++... ......+....++.++|.++||+++|+
T Consensus 256 ~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~------ 328 (471)
T PRK10504 256 KLFRTRTFSLGLAGSFAGRIG-SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRR------ 328 (471)
T ss_pred HHhcccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH------
Confidence 478899999887776665433 333333333 3443 67765432 556677778888999999999987632
Q ss_pred HHHHHHHHHHHHHHHHhc-c-Cc--hhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhh
Q 012908 322 AMAVAQFVMAIGHIFLGM-G-WP--GAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIF 393 (453)
Q Consensus 322 ~l~~~~~~~~~~~ll~~~-~-~~--~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l 393 (453)
.+....++++++.+++.. . .. ..+.+..++.|+++|..++....++.+.+..++.|..+++.. ++..+|+.+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i 408 (471)
T PRK10504 329 VLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTI 408 (471)
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHH
Confidence 223333333433333222 1 11 123456677889999999999999999999898998888853 344444444
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.2e-07 Score=93.08 Aligned_cols=171 Identities=15% Similarity=0.061 Sum_probs=106.3
Q ss_pred HHHhhcHHHHHHHHHHHhhccccceeecchHHHHHHh----CCChh--hHHHHHHHHhhhhccccccchhhhhhhccCCc
Q 012908 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSL----GYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYP 318 (453)
Q Consensus 245 ~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~al----g~~~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~ 318 (453)
++.+|++.+|.+.+..++......++.........+. +.+.. ....++..+.+.+|.+.+|.++||+++|+.
T Consensus 217 ~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-- 294 (420)
T PRK09528 217 LALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNA-- 294 (420)
T ss_pred HHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh--
Confidence 4567888888776654333322222222233333322 33222 236677788889999999999999987532
Q ss_pred hhHHHHHHHHHHHHHHHHHh-ccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH-----hhhhhhHhh
Q 012908 319 RPVAMAVAQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL-----TLANPAGSI 392 (453)
Q Consensus 319 r~~~l~~~~~~~~~~~ll~~-~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~-----~la~~ig~~ 392 (453)
+....++..++.+++. ..++..+++...+.|++++......-..+.|.++.|..++.|+.. .++..+|+.
T Consensus 295 ----~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~ 370 (420)
T PRK09528 295 ----LLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLST 370 (420)
T ss_pred ----hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHH
Confidence 2233334444444333 334555667778888888887777778889999999888887652 366667776
Q ss_pred hhcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHH
Q 012908 393 FTSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSM 430 (453)
Q Consensus 393 l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l 430 (453)
+.+. .|.. -|+.+|.+.+++.+++.++..
T Consensus 371 ~~G~l~~~~---------G~~~~f~~~~~~~~i~~~~~~ 400 (420)
T PRK09528 371 LAGNLYDSI---------GFQGTYLILGGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHhh---------CchHHHHHHHHHHHHHHHHHH
Confidence 6654 2221 299999998887766655444
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.7e-07 Score=97.95 Aligned_cols=184 Identities=10% Similarity=0.084 Sum_probs=123.7
Q ss_pred HHHHhhcHHHHHHHHHHHhhccccceeecchHHHHHHhCCCh----------hhHHHHHHHHhhhhccccccchhhhhhh
Q 012908 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDN----------THIFVSMISIWNFLGRVGGGYFSEIIVR 313 (453)
Q Consensus 244 ~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~----------~~~~Vsl~si~n~~GRl~~G~lsD~l~~ 313 (453)
.++.+|+++||.+++..++....-..+..+.....++.|+++ ....+++.++....+++..|.++||+++
T Consensus 201 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~ 280 (418)
T TIGR00889 201 AFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGI 280 (418)
T ss_pred HHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 456789999999888877754433223233333445556442 1347888888999999999999999976
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhc--cCc---hhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----
Q 012908 314 DYAYPRPVAMAVAQFVMAIGHIFLGM--GWP---GAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT---- 384 (453)
Q Consensus 314 ~~~~~r~~~l~~~~~~~~~~~ll~~~--~~~---~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~---- 384 (453)
|+ .+.+..++..++..++.. ..+ ..+++..++.|+++|......+.+++|.++.++.|+.+|+..
T Consensus 281 r~------~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~ 354 (418)
T TIGR00889 281 KK------VMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCN 354 (418)
T ss_pred HH------HHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 42 234444444554433332 111 235667889999999999999999999999999999998873
Q ss_pred -hhhhhHhhhhcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012908 385 -LANPAGSIFTSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRT 436 (453)
Q Consensus 385 -la~~ig~~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r~ 436 (453)
++..+||.+.+. .+..+. .+...|+.+|.+.++.++++.++...+.++.
T Consensus 355 ~lg~~iGp~l~G~l~~~~g~---~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 355 GFGSLLGYILSGVMVEKMFA---YGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred hhHHHHHHHHHHHHHHHhcc---ccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 345566666554 222100 0113499999999888888877776666544
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-06 Score=93.20 Aligned_cols=175 Identities=13% Similarity=0.136 Sum_probs=92.7
Q ss_pred HHHHhhcHHHHHHHHHHHhhcccccee-ecchHHHH-HHhCCChhhH--HH-HHHHHhhhhccccccchhhhhhhccCCc
Q 012908 244 LTQALIKADFWLIFFSLLLGSGSGLTV-IDNLGQMS-QSLGYDNTHI--FV-SMISIWNFLGRVGGGYFSEIIVRDYAYP 318 (453)
Q Consensus 244 ~~~~l~s~~FWll~~~~~~~~g~gl~~-i~n~~~i~-~alg~~~~~~--~V-sl~si~n~~GRl~~G~lsD~l~~~~~~~ 318 (453)
+++.++++++|.+....++.. .+... .....+.. +.+|++..+. .. .+..++..+|.+++|+++||+++++
T Consensus 215 l~~~~~~~~~~~~ll~~~l~~-~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~--- 290 (491)
T PRK11010 215 LRDFFGRNNAWLILLLIVLYK-LGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFR--- 290 (491)
T ss_pred HHHHHcCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---
Confidence 345666777776655543322 22221 22233443 4578876544 33 3445788999999999999998742
Q ss_pred hhHHHH-HHHHHHHHHHHHHhcc-Cch-hHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHh
Q 012908 319 RPVAMA-VAQFVMAIGHIFLGMG-WPG-AMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGS 391 (453)
Q Consensus 319 r~~~l~-~~~~~~~~~~ll~~~~-~~~-~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~ 391 (453)
...+. +...+..+...++... .+. .+.....+..+++|..++.+.++..++...+.-++.||+.. ++..+++
T Consensus 291 -~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~ 369 (491)
T PRK11010 291 -ALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVG 369 (491)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 22211 1112211222222222 221 23334555444444444444455555555444455566554 4444444
Q ss_pred hhhcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHH
Q 012908 392 IFTSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 432 (453)
Q Consensus 392 ~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l 432 (453)
.+.+. .|.. -|+..|.+.+.+++.+.++...+
T Consensus 370 ~~~G~l~~~~---------G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 370 PVAGWFVEAH---------GWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHh---------ChHHHHHHHHHHHHHHHHHHHHH
Confidence 43332 2221 29999999999998887777665
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.4e-07 Score=104.21 Aligned_cols=175 Identities=14% Similarity=0.094 Sum_probs=111.8
Q ss_pred HHHHhhcHHHHHHHHHHHhhccccceeecchHHHHHH-hCCChh--hHHHHHHHHhhhhccccccchhhhhhhccCCchh
Q 012908 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (453)
Q Consensus 244 ~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~a-lg~~~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~ 320 (453)
++...+++.+|.+.+.+++....+.++...+..+.++ +|.+.. ..+.+.++++..+|.+..|.++|+..+++..+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~- 296 (1140)
T PRK06814 218 LKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPI- 296 (1140)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehH-
Confidence 5567788999999888877766665566666676665 576654 347889999999999999999976654332211
Q ss_pred HHHHHHHHHHHHHHHHH-----------------h-ccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhh
Q 012908 321 VAMAVAQFVMAIGHIFL-----------------G-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNF 382 (453)
Q Consensus 321 ~~l~~~~~~~~~~~ll~-----------------~-~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~ 382 (453)
..+ ...+..+...+. . ..+...++++.+++|++.|..+...++++.+.+..++.|+.+|+
T Consensus 297 -~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~ 374 (1140)
T PRK06814 297 -GAL-LMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAA 374 (1140)
T ss_pred -HHH-HHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHH
Confidence 111 111111111110 0 02223466788899999999999999999999999999999998
Q ss_pred Hh----hhhhhHhhhhcCcCCCCCCcccCCcccHHHHHHHHHHHHHHHHH
Q 012908 383 LT----LANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVIL 428 (453)
Q Consensus 383 ~~----la~~ig~~l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l 428 (453)
.. ++.++|+.+.+..... ...+...|++.+.++++..+.
T Consensus 375 ~~~~~~~~~~ig~~~~g~l~~~-------~~~~~~~~~~~~~~~~~~~~~ 417 (1140)
T PRK06814 375 NNVLNAAFMVAGTIILALLQAL-------GFSIPWIILFIALANLIVAIL 417 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-------ccCHHHHHHHHHHHHHHHHHH
Confidence 53 4555666655431100 113666666555544444433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=5e-06 Score=87.88 Aligned_cols=157 Identities=11% Similarity=0.076 Sum_probs=92.3
Q ss_pred HHHHHHHHHhhccccceeecchHHHHH-HhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHH
Q 012908 253 FWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFV 329 (453)
Q Consensus 253 FWll~~~~~~~~g~gl~~i~n~~~i~~-alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~ 329 (453)
++.+....++....+..+...+.+..+ ++|++..+ ..++..+++..+|++..|+++||+++|+ .+ .+...+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~----~~--~~~~~~ 350 (496)
T PRK03893 277 GVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRK----AY--VCSLLI 350 (496)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH----HH--HHHHHH
Confidence 334444444443344334455666674 67887643 4888899999999999999999997642 22 222222
Q ss_pred HHHHHHHH-hccCch--hHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH----hhhhhhHhhhhcC-cCCCC
Q 012908 330 MAIGHIFL-GMGWPG--AMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL----TLANPAGSIFTSM-PRVDE 401 (453)
Q Consensus 330 ~~~~~ll~-~~~~~~--~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~----~la~~ig~~l~~~-~~~~~ 401 (453)
..++.+++ ...... .+.....+.++...+...+.|.++.|.++.++-|+.+|+. .++..+|+.+.+. .+..
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~- 429 (496)
T PRK03893 351 SQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRL- 429 (496)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccC-
Confidence 22222222 122221 1222233333444445678999999999988889888875 3566677776664 2221
Q ss_pred CCcccCCcccHHHHHHHHHHHHH
Q 012908 402 PLKCEGSICYFLTSMIMSGLCIV 424 (453)
Q Consensus 402 ~~~C~G~~Cy~~~f~i~~~~~~~ 424 (453)
-|+.++.+.++.+.+
T Consensus 430 --------g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 430 --------DLGTALASLSFSLTF 444 (496)
T ss_pred --------ChHHHHHHHHHHHHH
Confidence 277777655544433
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-06 Score=93.39 Aligned_cols=177 Identities=17% Similarity=0.247 Sum_probs=108.4
Q ss_pred HHHhhcHHHHHHHHHHHhhccccceeecchHHHHHHhCCChhhH--HHHHHHHhhhhccccccchhhhhhhccCCchhHH
Q 012908 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVA 322 (453)
Q Consensus 245 ~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~~--~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~ 322 (453)
++.+|+++-|++-+.+++.-|.=..+.+-..+..++ .++.... ...+..+...++|.++|+++||+++++ ..
T Consensus 246 ~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~----vl- 319 (462)
T PRK15034 246 LPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVR----VT- 319 (462)
T ss_pred HHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchH----HH-
Confidence 467899999999999988877766555555555555 3333222 344567889999999999999998742 11
Q ss_pred HHHHHHHHHHHH-H-HHhccC----chhHHH-----HHHHHHhhhhhhcchhHHHHHH--hhcc---------------c
Q 012908 323 MAVAQFVMAIGH-I-FLGMGW----PGAMYV-----GTLLIGLGYGAHWAIVPAAASE--LFGL---------------K 374 (453)
Q Consensus 323 l~~~~~~~~~~~-l-l~~~~~----~~~l~~-----~~~liG~~yG~~~~~~p~i~s~--~FG~---------------k 374 (453)
.+..+.+.+.. . .+..+. +-.+.. ..+..|+++|+.|-+.|.+..+ --.. |
T Consensus 320 -~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~ 398 (462)
T PRK15034 320 -LINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVT 398 (462)
T ss_pred -HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHH
Confidence 22222222221 1 111211 111222 3344488888888888776653 1111 2
Q ss_pred chhhhhhhHhhhhhhHhhhhcC-----cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012908 375 KFGALYNFLTLANPAGSIFTSM-----PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRT 436 (453)
Q Consensus 375 ~fg~~yg~~~la~~ig~~l~~~-----~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r~ 436 (453)
+-|.-=|++.....+|++++.. .+. ++.|..+|.+..+..+++++++.+...|.
T Consensus 399 ~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~--------~g~~~~~~~~~~~~~~~~~~~~w~~y~r~ 457 (462)
T PRK15034 399 ETAAALGFISAIGAVGGFFIPQAFGMSLNM--------TGSPVGAMKVFLIFYIVCVLLTWLVYGRR 457 (462)
T ss_pred HHHHHHHHHHHHHHcccchhhHHHHHHHHH--------cCCcHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 5666667776666666666553 111 34599999999998888888876655443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.5e-06 Score=87.33 Aligned_cols=164 Identities=17% Similarity=0.173 Sum_probs=96.5
Q ss_pred HHHhhcHHHHHHHHHHHhhccccceeec-chHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhH
Q 012908 245 TQALIKADFWLIFFSLLLGSGSGLTVID-NLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 321 (453)
Q Consensus 245 ~~~l~s~~FWll~~~~~~~~g~gl~~i~-n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~ 321 (453)
++.++++.||......+. .+......+ -+....++.|.++.. ..+++..+.+.+||+..|++.||+++|+
T Consensus 194 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~------ 266 (381)
T PRK03633 194 WPMLKLRQARLGVNGCII-SGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLL------ 266 (381)
T ss_pred HHHHHhcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHH------
Confidence 445677777765433222 122111112 234445566776543 4788899999999999999999987642
Q ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhh----HhhhhhhHhhhhcC-
Q 012908 322 AMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNF----LTLANPAGSIFTSM- 396 (453)
Q Consensus 322 ~l~~~~~~~~~~~ll~~~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~----~~la~~ig~~l~~~- 396 (453)
.+.....++.++.+.+. . ....+.+..+.|++.+..+......+.|....++.+.-++. ..+|..+||.+.+.
T Consensus 267 ~l~~~~~~~~~~~~~~~-~-~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l 344 (381)
T PRK03633 267 VLRVQVFVVILGSIAML-S-QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAML 344 (381)
T ss_pred HHHHHHHHHHHHHHHHh-h-hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333444433322 1 12334456677877777777777778888876665544444 24666777776664
Q ss_pred cCCCCCCcccCCcccHHHHHHHHHHHHHHH
Q 012908 397 PRVDEPLKCEGSICYFLTSMIMSGLCIVAV 426 (453)
Q Consensus 397 ~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~ 426 (453)
.|. ..++..|.+.+.+.+++.
T Consensus 345 ~~~---------~g~~~~f~~~~~~~l~~~ 365 (381)
T PRK03633 345 MQN---------YSDNLLFIMIASVSFIYL 365 (381)
T ss_pred HHH---------hCccHHHHHHHHHHHHHH
Confidence 221 127788887766665443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.1e-06 Score=90.25 Aligned_cols=156 Identities=17% Similarity=0.150 Sum_probs=92.9
Q ss_pred hHHHHHHhCCChh--hHHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc---cC-ch-hHH
Q 012908 274 LGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM---GW-PG-AMY 346 (453)
Q Consensus 274 ~~~i~~alg~~~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~---~~-~~-~l~ 346 (453)
...+.++.|.+.. .......++.+.+|.+.+|+++||++||+ .+....++++++.+++.. .+ +. ...
T Consensus 294 ~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~------~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~ 367 (479)
T PRK10077 294 APEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKP------LQIIGALGMAIGMFSLGTAFYTQAPGIVAL 367 (479)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChH------HHHHhHHHHHHHHHHHHHHHhcCcccHHHH
Confidence 3556677777643 33555688899999999999999997642 223334444444443321 11 21 222
Q ss_pred HHHHHHHhhhhhhc-chhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcCcCCCCCCcccCCcccHHHHHHHHHH
Q 012908 347 VGTLLIGLGYGAHW-AIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGL 421 (453)
Q Consensus 347 ~~~~liG~~yG~~~-~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~ 421 (453)
.+..+.+.+++..+ ++....++|.|+.++-|+..|+.. ++..++++++......+. =...-..+.+|++.+++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~--~~~~~~~~~~~~~~~~~ 445 (479)
T PRK10077 368 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSW--LVAHFHNGFSYWIYGCM 445 (479)
T ss_pred HHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccc--hhhhccCccHHHHHHHH
Confidence 34445555555544 567899999999988898888864 455555554432110000 00012346678887878
Q ss_pred HHHHHHHHHHHHHhhh
Q 012908 422 CIVAVILSMILVHRTT 437 (453)
Q Consensus 422 ~~~~~~l~l~l~~r~r 437 (453)
++++.++...+..++|
T Consensus 446 ~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 446 GVLAALFMWKFVPETK 461 (479)
T ss_pred HHHHHHHHHhccccCC
Confidence 7777777666555444
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.9e-06 Score=84.80 Aligned_cols=167 Identities=7% Similarity=-0.076 Sum_probs=107.8
Q ss_pred CHHHHhhcHHHHHHHHHHHhhccccceeecchHHHHHHhCCChhhH--HHHHHHHhhhhccccccchhhhhhhccCCchh
Q 012908 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (453)
Q Consensus 243 t~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~~--~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~ 320 (453)
+.++.+|+++||.+.+..++..++-..+.....+..+++|.++... ..++..+...++.+.+|.+.||+++ .+
T Consensus 197 ~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~----~~- 271 (382)
T TIGR00902 197 AFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSA----RD- 271 (382)
T ss_pred hHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCH----HH-
Confidence 3567899999999998888877776667777777778888876533 4444555555555555555554433 23
Q ss_pred HHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH-----hhhhhhHhhhh
Q 012908 321 VAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL-----TLANPAGSIFT 394 (453)
Q Consensus 321 ~~l~~~~~~~~~~~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~-----~la~~ig~~l~ 394 (453)
.+.+..+...+...++.. ++...+++...+-|+++|..+......+++. ..++.++-.++. .++..+|+++-
T Consensus 272 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~ 349 (382)
T TIGR00902 272 -LLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFA 349 (382)
T ss_pred -HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666555543 3344577789999999999999999999988 556766555543 24445555544
Q ss_pred cC-cCCCCCCcccCCcccHHHHHHHHHHHHHHH
Q 012908 395 SM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAV 426 (453)
Q Consensus 395 ~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~ 426 (453)
+. .|.. .+ ..|.+++.+.+++.
T Consensus 350 G~l~~~~---------g~-~~~~~~~~~~~~~~ 372 (382)
T TIGR00902 350 GFIYPTL---------GA-GTFVFMAIIAAAAF 372 (382)
T ss_pred HHHHHhc---------cH-HHHHHHHHHHHHHH
Confidence 43 2221 13 56777776665543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.8e-06 Score=87.61 Aligned_cols=166 Identities=6% Similarity=-0.071 Sum_probs=107.1
Q ss_pred HHHhhcHHHHHHHHHHHhhccccceeecchHHHHHHhCCC--hh--hHHHHHHHHhhhhccccccchhhhhhhccCCchh
Q 012908 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYD--NT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (453)
Q Consensus 245 ~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~--~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~ 320 (453)
++.+|++.+|+..+..++-.|.-.+..+++.+..++.+.. .. ..+.+..-..-.+||+++|++.||+.+| |
T Consensus 226 ~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~----~- 300 (410)
T TIGR00885 226 SRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAH----K- 300 (410)
T ss_pred HHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH----H-
Confidence 4577889999988888888888777777777777765432 22 2256666677899999999999998553 2
Q ss_pred HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH--hhhhhhHhhhhcC-c
Q 012908 321 VAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL--TLANPAGSIFTSM-P 397 (453)
Q Consensus 321 ~~l~~~~~~~~~~~ll~~~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~--~la~~ig~~l~~~-~ 397 (453)
.+.+..++.++.+++....+......+.+++|++.+..|++.-++..+.+|.+.-..--+++ .++..++|.+.+. .
T Consensus 301 -~l~i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~~Gga~~p~l~G~~~ 379 (410)
T TIGR00885 301 -VLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAIIGGGIVPPLQGFII 379 (410)
T ss_pred -HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhccchHHHHHHHHH
Confidence 23333343334444433333333456788899999999999999999999944322223332 3667777777775 2
Q ss_pred CCCCCCcccCCcccHHHHHHHH
Q 012908 398 RVDEPLKCEGSICYFLTSMIMS 419 (453)
Q Consensus 398 ~~~~~~~C~G~~Cy~~~f~i~~ 419 (453)
|..+. . ..+.++.+|++..
T Consensus 380 d~~~~-~--~~~~~~~~~~~~~ 398 (410)
T TIGR00885 380 DMKEI-A--AAPAVNTSFILPL 398 (410)
T ss_pred HHhcc-c--ccCccchHHHHHH
Confidence 31100 0 0123888888744
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=98.48 E-value=7e-06 Score=82.86 Aligned_cols=169 Identities=15% Similarity=0.071 Sum_probs=104.7
Q ss_pred HhhcHHHHHHHHHHHhhccccceeecchHHHH-HHhCCChhhH--HHHHHHHhhhhccccccchhhhhhhccCCchhHHH
Q 012908 247 ALIKADFWLIFFSLLLGSGSGLTVIDNLGQMS-QSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 323 (453)
Q Consensus 247 ~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~-~alg~~~~~~--~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l 323 (453)
.++++++|.++...++..+...++........ +++|.++... ..++..+....+++..|.++||+++|+ ..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~----~~-- 268 (375)
T TIGR00899 195 LLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRR----LM-- 268 (375)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchh----HH--
Confidence 45677788777666555443333333344443 4567765432 555666777889999999999987642 11
Q ss_pred HHHHHHHHHHHHHHh-ccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH----hhhhhhHhhhhcC-c
Q 012908 324 AVAQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL----TLANPAGSIFTSM-P 397 (453)
Q Consensus 324 ~~~~~~~~~~~ll~~-~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~----~la~~ig~~l~~~-~ 397 (453)
.+..++..+..+++. ..+...+++..++.|+++|..+......+.|.+. ++.++..|+. .++..+|+.+.+. .
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~g~~~ 347 (375)
T TIGR00899 269 LLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGWIIAGSVGGILA 347 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222222 2223345556778899999998888888999886 5566666664 3666777766664 2
Q ss_pred CCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 012908 398 RVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 431 (453)
Q Consensus 398 ~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~ 431 (453)
+. ..|+..|.+.+..++++.++.+.
T Consensus 348 ~~---------~g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 348 ER---------WSYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred Hh---------ccchhHHHHHHHHHHHHHHHHhe
Confidence 21 13889999888887777766543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.9e-06 Score=84.13 Aligned_cols=165 Identities=8% Similarity=0.049 Sum_probs=98.0
Q ss_pred HHHhhcHHHHHHHHHHHhhccccceeecchHHHH-HHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhH
Q 012908 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMS-QSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 321 (453)
Q Consensus 245 ~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~-~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~ 321 (453)
++.++++.+|...+..++..+....+.....+.. ++.|++... ...+..++++.+|++..|.+.||.. |..
T Consensus 210 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~------~~~ 283 (394)
T PRK10213 210 FRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV------KLA 283 (394)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc------hhH
Confidence 4567899999887765555443333334444544 456877643 3677788888999888888887632 222
Q ss_pred HHHHHHHHHHHHHHHH-hccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhh----hhhHhhhhhhHhhhhcC
Q 012908 322 AMAVAQFVMAIGHIFL-GMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGAL----YNFLTLANPAGSIFTSM 396 (453)
Q Consensus 322 ~l~~~~~~~~~~~ll~-~~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~----yg~~~la~~ig~~l~~~ 396 (453)
.+....+..+.+.++. ...++..+++..++.|+++|......+..+.+... ++.+.. +....++.++|+.+.+.
T Consensus 284 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~ 362 (394)
T PRK10213 284 LAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGY 362 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222222 22334456678888999999999989977766553 333333 34445777778777665
Q ss_pred -cCCCCCCcccCCcccHHHHHHHHHHHHHH
Q 012908 397 -PRVDEPLKCEGSICYFLTSMIMSGLCIVA 425 (453)
Q Consensus 397 -~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~ 425 (453)
.|.. -++..+...++++++.
T Consensus 363 l~~~~---------g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 363 ALDNI---------GLTSPLMLSGTLMLLT 383 (394)
T ss_pred HHhcc---------ChhhHHHHHHHHHHHH
Confidence 2221 1666666665554433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.5e-06 Score=84.01 Aligned_cols=144 Identities=10% Similarity=0.044 Sum_probs=75.9
Q ss_pred HHHhhcHHHHHHHHHHHhhccccceeecchHHHHHH-hCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhH
Q 012908 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 321 (453)
Q Consensus 245 ~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~a-lg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~ 321 (453)
++.++++++|...+..++..+....+.....+...+ .|.++.. ...++.++...++++..|.+.||+++|+. .
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~----~ 263 (377)
T PRK11102 188 ASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNM----L 263 (377)
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH----H
Confidence 456777788876666555443333333333444443 5776543 37788889999999999999999977532 1
Q ss_pred HHH-HHHHHHHHHHHHHhc-cC-chhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh-----hhhhhHhhh
Q 012908 322 AMA-VAQFVMAIGHIFLGM-GW-PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT-----LANPAGSIF 393 (453)
Q Consensus 322 ~l~-~~~~~~~~~~ll~~~-~~-~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~-----la~~ig~~l 393 (453)
.+. ..+.+..+..+.... .. ...+.++..+.+...+......-..+.|.+. ++-|+-.++.. ++..+|+++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 264 RFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 111 111222222211111 11 1123333444444444444444455666665 55555555532 445555544
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.8e-06 Score=86.30 Aligned_cols=187 Identities=12% Similarity=0.089 Sum_probs=97.8
Q ss_pred HHHHhhcHHHHHHHHHHHhhccccceeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhH
Q 012908 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 321 (453)
Q Consensus 244 ~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~ 321 (453)
+++.++++.||.+.+..+........+........++.+.++.. ...++.++....+....+...|+ |.+..|
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~---r~~~~~-- 275 (400)
T PRK11646 201 MTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEK---RFRLEH-- 275 (400)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH---hcchhH--
Confidence 34567778888655544332222211222333445565544332 23344444443333222333332 112122
Q ss_pred HHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcC
Q 012908 322 AMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSM 396 (453)
Q Consensus 322 ~l~~~~~~~~~~~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~ 396 (453)
.+.....+.+++.+++.. .+...+.+...+.|+++|......+.++.+....++.|+-+|+.. ++.++|+.+.+.
T Consensus 276 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~ 355 (400)
T PRK11646 276 RLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGW 355 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHH
Confidence 123334444455444332 223334556677888999888899999999999999999998864 455666666554
Q ss_pred -cCCCCCCcccCCcc-cHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 012908 397 -PRVDEPLKCEGSIC-YFLTSMIMSGLCIVAVILSMILVHRTTNVYSH 442 (453)
Q Consensus 397 -~~~~~~~~C~G~~C-y~~~f~i~~~~~~~~~~l~l~l~~r~r~~y~~ 442 (453)
.+.. |..+ +..++.+...+++++.+. +....|+.|.-++
T Consensus 356 l~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 396 (400)
T PRK11646 356 LFDLG------KALNQPELPWMMLGIIGLITLLA-LYWQFSQKRIARR 396 (400)
T ss_pred HHHHH------hhcCCcchHHHHHHHHHHHHHHH-HHHHHhhchHHHh
Confidence 2221 1112 456666666666665444 3444555554443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.6e-06 Score=89.66 Aligned_cols=160 Identities=12% Similarity=0.140 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhhcccc---ceeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHH
Q 012908 252 DFWLIFFSLLLGSGSG---LTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVA 326 (453)
Q Consensus 252 ~FWll~~~~~~~~g~g---l~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~ 326 (453)
+.|.++...++....+ .+....+.++.+++|.++.+ ..++...+...++++..|.++||++||+ .+...
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~------~~~~~ 91 (394)
T PRK10213 18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRY------VVILF 91 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHH------HHHHH
Confidence 4444555555532222 23344567788899988754 4788999999999999999999998753 23344
Q ss_pred HHHHHHHHHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcCcCCCC
Q 012908 327 QFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSMPRVDE 401 (453)
Q Consensus 327 ~~~~~~~~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~~~~~~ 401 (453)
.++.+++.++... .+...+++.-++.|++.|..+...+.+++|+|..|+.++..++.. ++..+|+.+.+.-..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~-- 169 (394)
T PRK10213 92 AVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE-- 169 (394)
T ss_pred HHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 4444555544333 344568888899999999999999999999999899998888864 333344443332100
Q ss_pred CCcccCCcccHHHHHHHHHHHHHH
Q 012908 402 PLKCEGSICYFLTSMIMSGLCIVA 425 (453)
Q Consensus 402 ~~~C~G~~Cy~~~f~i~~~~~~~~ 425 (453)
.-.+|..|.+.+.++++.
T Consensus 170 ------~~gw~~~f~~~~~l~~~~ 187 (394)
T PRK10213 170 ------LIGWRNVFNAAAVMGVLC 187 (394)
T ss_pred ------hcCHHHHHHHHHHHHHHH
Confidence 113889998877655543
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.6e-06 Score=85.99 Aligned_cols=136 Identities=14% Similarity=0.081 Sum_probs=88.0
Q ss_pred HHHhhcHH---HHHHHHHHHhhccccceeecchHHHHHHhCCChhhH--HHHHHH-HhhhhccccccchhhhhhhccCCc
Q 012908 245 TQALIKAD---FWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI--FVSMIS-IWNFLGRVGGGYFSEIIVRDYAYP 318 (453)
Q Consensus 245 ~~~l~s~~---FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~~--~Vsl~s-i~n~~GRl~~G~lsD~l~~~~~~~ 318 (453)
++.++++. +|.+.+..++...+...+.....+..+++|+++.+. ..++.+ +...+|.+++|++.||+++|+..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l- 278 (356)
T TIGR00901 200 REFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYAL- 278 (356)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHH-
Confidence 34455554 776666555543333334455666667788876553 444444 56789999999999999875331
Q ss_pred hhHHHHHHHHHHHHHHHHHhc---c---------CchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhh
Q 012908 319 RPVAMAVAQFVMAIGHIFLGM---G---------WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLA 386 (453)
Q Consensus 319 r~~~l~~~~~~~~~~~ll~~~---~---------~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la 386 (453)
....++.+++..++.. . ....+..+.++.++++|..+....+++.|.+..++-|+.+|+....
T Consensus 279 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 353 (356)
T TIGR00901 279 -----LLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSL 353 (356)
T ss_pred -----HHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 2222222333322111 1 1123555666779999999999999999999999999999987643
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=2e-06 Score=90.51 Aligned_cols=171 Identities=16% Similarity=0.273 Sum_probs=123.0
Q ss_pred cHHHHHHHHHHHhhccccceeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHH
Q 012908 250 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 327 (453)
Q Consensus 250 s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~ 327 (453)
.+.+|++++.+++......++......+.+++|.+..+ ..++...+...++.+.+|.++||++||+- +....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~------~~~~~ 82 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNI------FFTAI 82 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH------HHHHH
Confidence 34689999988887666666667788888999998754 36778888899999999999999987521 22333
Q ss_pred HHHHHHHHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcC-cCCCC
Q 012908 328 FVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSM-PRVDE 401 (453)
Q Consensus 328 ~~~~~~~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~-~~~~~ 401 (453)
++.+++.++... .+...+++.-++.|++.|..+......++|++..++.++.+|+.. ++..+|+.+.+. .+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~-- 160 (471)
T PRK10504 83 VLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY-- 160 (471)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh--
Confidence 344444433322 334467778899999999999999999999999999999988865 344444444332 111
Q ss_pred CCcccCCcccHHHHHHHHHHHHHHHHHHHHHHHh
Q 012908 402 PLKCEGSICYFLTSMIMSGLCIVAVILSMILVHR 435 (453)
Q Consensus 402 ~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r 435 (453)
.-||..|.+....+.++.++......|
T Consensus 161 -------~gw~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 161 -------ASWHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred -------ccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 138999999888887777766554433
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.5e-06 Score=96.03 Aligned_cols=135 Identities=17% Similarity=0.114 Sum_probs=93.8
Q ss_pred HHHHhhcHHHHHHHHHHHhhccccceeecchHHHHH-HhCCChh---hHHHHHHHHhhhhccccccchhhhhhhccCCch
Q 012908 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNT---HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 319 (453)
Q Consensus 244 ~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~-alg~~~~---~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r 319 (453)
+++.++++.+|.+.+..++.......+........+ .+|.+.. ..+.++.+++..+|.+++|.++||+++++.
T Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~--- 301 (1146)
T PRK08633 225 LKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGL--- 301 (1146)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccc---
Confidence 456778888998887777666655555555555554 4677654 236777888889999999999988765321
Q ss_pred hHHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh
Q 012908 320 PVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT 384 (453)
Q Consensus 320 ~~~l~~~~~~~~~~~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~ 384 (453)
+.+..++++++.+++.. .+...+.+..++.|+++|..+....+++.+.+..++-|+.+++..
T Consensus 302 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~ 364 (1146)
T PRK08633 302 ---VPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANN 364 (1146)
T ss_pred ---hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHH
Confidence 22233333344433332 233356678889999999999999999999999888898888764
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.4e-05 Score=81.86 Aligned_cols=143 Identities=13% Similarity=0.147 Sum_probs=76.8
Q ss_pred HHHhhcHHHHHHHHHHHhhccccceeecchHHHH-HHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhH
Q 012908 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMS-QSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 321 (453)
Q Consensus 245 ~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~-~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~ 321 (453)
++.++++.+|...+...+.......+.+-..... +++|.++.. ...+..++.+.+|++..|++.||+++|+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~------ 270 (392)
T PRK10473 197 SESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRT------ 270 (392)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------
Confidence 3567788888776666555443333332222333 356777543 3677889999999999999999997642
Q ss_pred HHHHHHHHHHHHHHHHhcc-CchhHHHHHHHHHhhhhhhcchhHHHHHHhhcc-cchhhhhhhHh----hhhhhHhhhhc
Q 012908 322 AMAVAQFVMAIGHIFLGMG-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGL-KKFGALYNFLT----LANPAGSIFTS 395 (453)
Q Consensus 322 ~l~~~~~~~~~~~ll~~~~-~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~-k~fg~~yg~~~----la~~ig~~l~~ 395 (453)
.+.+...+..++.+++... ......+...+++.++|..++..- ..+.... ++-|...+... +++++++.+.+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~ 348 (392)
T PRK10473 271 LMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGVAM--SQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAA 348 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHhccCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233333334444333322 222344555666666665544322 2222221 33355555444 44555555554
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.7e-05 Score=79.65 Aligned_cols=158 Identities=14% Similarity=0.084 Sum_probs=107.3
Q ss_pred HHhhcHHHHHHHHHHHhhccccceeecchHHHHHH---hCCChh--hHHHHHHHHhhhhccccccchhhhhhhccCCchh
Q 012908 246 QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS---LGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (453)
Q Consensus 246 ~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~a---lg~~~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~ 320 (453)
..++++.+|+..+.+++-.|+-..+.+......++ .|+++. ...++.+..+-.+||++.+.+.||++++ |.
T Consensus 135 ~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~----~~ 210 (310)
T TIGR01272 135 SAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQG----RY 210 (310)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH----HH
Confidence 35788999999999999898888877767666654 366643 3488999999999999999999999763 22
Q ss_pred HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH---hhhhhhHhhhhcC-
Q 012908 321 VAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL---TLANPAGSIFTSM- 396 (453)
Q Consensus 321 ~~l~~~~~~~~~~~ll~~~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~---~la~~ig~~l~~~- 396 (453)
. .+..++.+++.+++...+......+..++|++.+..++..-+...+.++ ++-++.-+++ .+|..++|.+.+.
T Consensus 211 l--~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~-~~~~~asai~~~~~~Gg~i~P~l~G~l 287 (310)
T TIGR01272 211 L--AFNAFLAVLLSIGAALTHGYVAMWFVLALGLFNSIMFPTIFSLALNALG-RHTSQGSGILCLAIVGGAIVPLLQGSL 287 (310)
T ss_pred H--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhHHHHHHHHhcchHHHHHHHHH
Confidence 2 2223333333333323222223347778999999999999999999998 5555554543 3556677776664
Q ss_pred cCCCCCCcccCCcccHHHHHHHH
Q 012908 397 PRVDEPLKCEGSICYFLTSMIMS 419 (453)
Q Consensus 397 ~~~~~~~~C~G~~Cy~~~f~i~~ 419 (453)
.|.. .++.+|.+..
T Consensus 288 ad~~---------g~~~a~~v~~ 301 (310)
T TIGR01272 288 ADCL---------GIQLAFALPV 301 (310)
T ss_pred HHhc---------cchHHHHHHH
Confidence 2321 2677776433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.8e-05 Score=79.77 Aligned_cols=169 Identities=10% Similarity=-0.001 Sum_probs=101.0
Q ss_pred CHHHHhhcHHHHHHHHHHHhhccccceeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchh
Q 012908 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (453)
Q Consensus 243 t~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~ 320 (453)
+.++.+|++.||.+.+..++....-..+.+...+..++.|+++.. ...++..+....+++..|.+.||++++ +
T Consensus 197 ~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~----~- 271 (382)
T PRK11128 197 AWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSAR----D- 271 (382)
T ss_pred hHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH----H-
Confidence 467899999999887766665444333444555555777877543 355556666667777777676665442 2
Q ss_pred HHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh-----hhhhhHhhhh
Q 012908 321 VAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT-----LANPAGSIFT 394 (453)
Q Consensus 321 ~~l~~~~~~~~~~~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~-----la~~ig~~l~ 394 (453)
.+.+..+..+++.+++.. +++..+++..++.|+++|......-..+.+.- ..+.++.++... .+.++|+.+.
T Consensus 272 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~ig~~i~ 349 (382)
T PRK11128 272 -LLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAARP-GSEVIRLQALYSALAMGGSIAIMTVLS 349 (382)
T ss_pred -HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234444555555544432 33445677888889999887666666666654 355566666653 3446667666
Q ss_pred cC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHH
Q 012908 395 SM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVIL 428 (453)
Q Consensus 395 ~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l 428 (453)
+. .|.. | + ..|.+++++.+++.++
T Consensus 350 G~l~~~~------g---~-~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 350 GFLYQHL------G---A-GVFWVMALVALPALFI 374 (382)
T ss_pred HHHHHhc------c---H-HHHHHHHHHHHHHHHH
Confidence 64 3321 1 2 3566666555544433
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.1e-06 Score=88.88 Aligned_cols=172 Identities=11% Similarity=0.067 Sum_probs=111.7
Q ss_pred cHHHHHHHHHHHhhccccceeecchHHHH-HHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHH
Q 012908 250 KADFWLIFFSLLLGSGSGLTVIDNLGQMS-QSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVA 326 (453)
Q Consensus 250 s~~FWll~~~~~~~~g~gl~~i~n~~~i~-~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~ 326 (453)
++++|.+.+..++.....-++..-+.... +++|.+..+ ..+++..+...++++..|.++||++||+- +.+.
T Consensus 6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~------~~~~ 79 (395)
T PRK10054 6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRY------MLLA 79 (395)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchh------HHHH
Confidence 45689888877776444344444455544 457888654 47888888999999999999999988531 2233
Q ss_pred HHHHHHHHHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH----hhhhhhHhhhhcCcCCCC
Q 012908 327 QFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL----TLANPAGSIFTSMPRVDE 401 (453)
Q Consensus 327 ~~~~~~~~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~----~la~~ig~~l~~~~~~~~ 401 (453)
.++..++.+++.. ++...+.+...+.|.+++......+..++|.++.++.++.+|+. .++..+|+.+.+....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-- 157 (395)
T PRK10054 80 ITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-- 157 (395)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3333444444333 23334555566778888888888899999999888877777665 4555555555443111
Q ss_pred CCcccCCcccHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012908 402 PLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRT 436 (453)
Q Consensus 402 ~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r~ 436 (453)
..++.+|.+.+.+++++.++..+...|.
T Consensus 158 -------~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 158 -------QSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred -------hccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1278899988877777766554444333
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.8e-05 Score=80.11 Aligned_cols=145 Identities=12% Similarity=-0.047 Sum_probs=86.8
Q ss_pred HHHhhcHHHHHHHHHHHhhccccceeecchHHHH-HHhCCChhhH--HHHHHHHhhhhccccccchhhhhhhccCCchhH
Q 012908 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMS-QSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 321 (453)
Q Consensus 245 ~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~-~alg~~~~~~--~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~ 321 (453)
++.++++++|.+.+.+++..............+. +.+|.++... ......++..+|++..|.++||+++++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~------ 282 (406)
T PRK15402 209 KLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRS------ 282 (406)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------
Confidence 5678889999988776655433222222333343 3467765432 344566788899999999999986642
Q ss_pred HHHHHHHHHHHHHHHHhc------cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHh
Q 012908 322 AMAVAQFVMAIGHIFLGM------GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGS 391 (453)
Q Consensus 322 ~l~~~~~~~~~~~ll~~~------~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~ 391 (453)
.+.+..++++++.+++.. .....+.++.++.|++.|..+......+-..-. ++-|+..+.+. ++.++|+
T Consensus 283 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~g~ 361 (406)
T PRK15402 283 LIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSSD-VSKGTVSAAMGMLSMLIFTVGI 361 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcc-ccccHHHHHHHHHHHHHHHHHH
Confidence 223333344444433221 122345667888999999887665444433222 56666666643 5667777
Q ss_pred hhhcC
Q 012908 392 IFTSM 396 (453)
Q Consensus 392 ~l~~~ 396 (453)
.+.+.
T Consensus 362 ~~~~~ 366 (406)
T PRK15402 362 ELSKH 366 (406)
T ss_pred HHHHh
Confidence 77665
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.2e-06 Score=83.95 Aligned_cols=167 Identities=14% Similarity=0.166 Sum_probs=113.3
Q ss_pred cHHHHHHHHHHHhhcccc-ceeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHH
Q 012908 250 KADFWLIFFSLLLGSGSG-LTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVA 326 (453)
Q Consensus 250 s~~FWll~~~~~~~~g~g-l~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~ 326 (453)
++.++.....+.+..+.+ .++......+.+++|.++.+ ...+...+...++.+.+|.+.||++||+ .+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~------~~~~~ 76 (385)
T TIGR00710 3 AKAFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRP------VLLLG 76 (385)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChH------HHHHH
Confidence 344444444444444444 34455667778889987654 4788999999999999999999997742 22334
Q ss_pred HHHHHHHHHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcC-cCCC
Q 012908 327 QFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSM-PRVD 400 (453)
Q Consensus 327 ~~~~~~~~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~-~~~~ 400 (453)
.++.+++.++... .+...+.+..++.|++.|........++.|++..++-++.+|+.. ++..+|+.+.+. .+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~- 155 (385)
T TIGR00710 77 LFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW- 155 (385)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4444555544433 334467778899999999999999999999999888888888764 344444444332 111
Q ss_pred CCCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 012908 401 EPLKCEGSICYFLTSMIMSGLCIVAVILSMI 431 (453)
Q Consensus 401 ~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~ 431 (453)
..++.+|.+.+..++++.+...+
T Consensus 156 --------~~~~~~~~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 156 --------LSWHAIFAFLSLAGILLSALIFF 178 (385)
T ss_pred --------cCHHHHHHHHHHHHHHHHHHHHH
Confidence 13888998888777666655544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.1e-06 Score=87.36 Aligned_cols=144 Identities=17% Similarity=0.297 Sum_probs=102.2
Q ss_pred HHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHH
Q 012908 276 QMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLI 352 (453)
Q Consensus 276 ~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~-~~~~~l~~~~~li 352 (453)
.+.+++|.+..+ ...++..+...++.+.+|.++||++||+ .+.+..++.+++.++... .+...+.+..++.
T Consensus 22 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (352)
T PF07690_consen 22 YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRR------VLIIGLLLFALGSLLLAFASNFWLLLIARFLL 95 (352)
T ss_dssp HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHH------HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCee------eEeehhhhhhhHHHHhhhhhhHHHHhhhcccc
Confidence 556677776553 4888899999999999999999997742 345555555555333322 3333788899999
Q ss_pred HhhhhhhcchhHHHHHHhhcccchhhhhhhHhh----hhhhHhhhhcCcCCCCCCcccCCcccHHHHHHHHHHHHHHHHH
Q 012908 353 GLGYGAHWAIVPAAASELFGLKKFGALYNFLTL----ANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVIL 428 (453)
Q Consensus 353 G~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~l----a~~ig~~l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l 428 (453)
|++.|..+.....+++|++..++.++..|+... +..+|+.+.+.... ..-++.+|++.+.+++++.++
T Consensus 96 g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~--------~~~~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 96 GIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS--------YFGWRWAFLISAILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------HCHHCCHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh--------ccccccccccccchhhhhhhh
Confidence 999999999999999999999899999988753 44444443332111 112788999999998888775
Q ss_pred HHHHH
Q 012908 429 SMILV 433 (453)
Q Consensus 429 ~l~l~ 433 (453)
...+.
T Consensus 168 ~~~~~ 172 (352)
T PF07690_consen 168 FILFL 172 (352)
T ss_dssp HHCCC
T ss_pred Hhhhh
Confidence 43333
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.4e-06 Score=88.89 Aligned_cols=164 Identities=17% Similarity=0.258 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHhhccccceeecchHHHHHH---hCCChhh--HHHHHHHHhhhhccccccchhhh-hhhccCCchhHHHH
Q 012908 251 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQS---LGYDNTH--IFVSMISIWNFLGRVGGGYFSEI-IVRDYAYPRPVAMA 324 (453)
Q Consensus 251 ~~FWll~~~~~~~~g~gl~~i~n~~~i~~a---lg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~-l~~~~~~~r~~~l~ 324 (453)
+.+|.++...++-..+-.++..++....++ +|.+..+ ..++.+++...++++.+|+++|| ++||+ .+.
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~------~l~ 83 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKK------TMV 83 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHH------HHH
Confidence 347777777777544444555666666664 6777543 48899999999999999999999 77742 334
Q ss_pred HHHHHHHHHHHHHhccC-chhHHHHHHHHHhhhhhhcchhHHHHHHhhcccc-------hhhhhhhHhhhhhhHhhhhcC
Q 012908 325 VAQFVMAIGHIFLGMGW-PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKK-------FGALYNFLTLANPAGSIFTSM 396 (453)
Q Consensus 325 ~~~~~~~~~~ll~~~~~-~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~-------fg~~yg~~~la~~ig~~l~~~ 396 (453)
+..++.+++++++...+ ...++++-.+.|++.|...+..+++++|.|..++ ++..|....+|..+|+.+.+.
T Consensus 84 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~ 163 (475)
T TIGR00924 84 LGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGV 163 (475)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHH
Confidence 55566667776655433 3456678888999999999999999999997643 344444455777777766554
Q ss_pred cCCCCCCcccCCcccHHHHHHHHHHHHHHHHH
Q 012908 397 PRVDEPLKCEGSICYFLTSMIMSGLCIVAVIL 428 (453)
Q Consensus 397 ~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l 428 (453)
... ...|+.+|.+.+..++++.+.
T Consensus 164 l~~--------~~g~~~~f~~~~~~~~~~~l~ 187 (475)
T TIGR00924 164 IAE--------NYGYHVGFNLAAVGMVIGLLT 187 (475)
T ss_pred HHH--------hcChHHHHHHHHHHHHHHHHH
Confidence 111 124999999988666655433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.8e-06 Score=87.59 Aligned_cols=171 Identities=16% Similarity=0.185 Sum_probs=108.5
Q ss_pred HHhhcH-HHHHHHHHHHhhccccceeecchHHHH-HHhCCChhhH--HHHHHHHhhhhccccccchhhh-hhhccCCchh
Q 012908 246 QALIKA-DFWLIFFSLLLGSGSGLTVIDNLGQMS-QSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEI-IVRDYAYPRP 320 (453)
Q Consensus 246 ~~l~s~-~FWll~~~~~~~~g~gl~~i~n~~~i~-~alg~~~~~~--~Vsl~si~n~~GRl~~G~lsD~-l~~~~~~~r~ 320 (453)
+.++.+ .+|.++...++...+--.+...+.... +++|.++.+. .++.+........+.+|+++|| ++||+
T Consensus 15 ~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~----- 89 (500)
T PRK09584 15 NAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKR----- 89 (500)
T ss_pred hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH-----
Confidence 444666 599999888887655444444444444 5688876543 4444444455555789999999 57742
Q ss_pred HHHHHHHHHHHHHHHHHhcc--CchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccc------hhhhhhhHhhhhhhHhh
Q 012908 321 VAMAVAQFVMAIGHIFLGMG--WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKK------FGALYNFLTLANPAGSI 392 (453)
Q Consensus 321 ~~l~~~~~~~~~~~ll~~~~--~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~------fg~~yg~~~la~~ig~~ 392 (453)
.+.+..++.+++.+++... ....++++-++.|++.|......+++++|.|..++ ++..|....+|..+|+.
T Consensus 90 -~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~ 168 (500)
T PRK09584 90 -VIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSML 168 (500)
T ss_pred -HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHH
Confidence 2344455556666555432 22346667788999999999999999999997432 34334445566666666
Q ss_pred hhcCcCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHH
Q 012908 393 FTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSM 430 (453)
Q Consensus 393 l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l 430 (453)
+.+.... ...|+..|.+.++..+++.+..+
T Consensus 169 i~g~l~~--------~~g~~~~F~i~~i~~~i~~i~~~ 198 (500)
T PRK09584 169 ATPWLAA--------KYGWSVAFALSVVGMLITVVNFA 198 (500)
T ss_pred HHHHHHH--------hhCHHHHHHHHHHHHHHHHHHHH
Confidence 6553111 11399999988766666554433
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.6e-05 Score=82.45 Aligned_cols=145 Identities=14% Similarity=0.146 Sum_probs=88.0
Q ss_pred HHHHhhcHHHHHHHHHHHhhccccceeecchHHH-HHH-hCCCh-hhHHHHHHHHhhhhccccccchhhhhhhccCCchh
Q 012908 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQM-SQS-LGYDN-THIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (453)
Q Consensus 244 ~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i-~~a-lg~~~-~~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~ 320 (453)
+++.++++.||.+.+..++..... ...+..... .+. ++.+. .....++..+...+|.+.+|.++||+++|+ .
T Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~----~ 289 (437)
T TIGR00792 215 FKALFKNDQLLILCLAYLFYNLAF-NIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKI----L 289 (437)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHH-HHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH----H
Confidence 456788999998877666543322 222222111 111 22111 123556678889999999999999997742 2
Q ss_pred HHHHHHHHHHHHHHHHHhcc--CchhHHHHHHHHHhhhhhhcchhHHHHHHh-------hcccchhhhhhhHh----hhh
Q 012908 321 VAMAVAQFVMAIGHIFLGMG--WPGAMYVGTLLIGLGYGAHWAIVPAAASEL-------FGLKKFGALYNFLT----LAN 387 (453)
Q Consensus 321 ~~l~~~~~~~~~~~ll~~~~--~~~~l~~~~~liG~~yG~~~~~~p~i~s~~-------FG~k~fg~~yg~~~----la~ 387 (453)
+ .+...+.+++.+++... +...+.+..++.|+++|..+....++++|. .|.|+-|..+|+.. ++.
T Consensus 290 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~ 367 (437)
T TIGR00792 290 F--AGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQ 367 (437)
T ss_pred H--HHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHH
Confidence 2 33334444444433322 223455677888999999999999999887 46677788887753 444
Q ss_pred hhHhhhhc
Q 012908 388 PAGSIFTS 395 (453)
Q Consensus 388 ~ig~~l~~ 395 (453)
.+|+.+.+
T Consensus 368 ~lg~~i~g 375 (437)
T TIGR00792 368 ALAGFLVG 375 (437)
T ss_pred HHHHHHHH
Confidence 45544433
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.2e-06 Score=85.01 Aligned_cols=181 Identities=18% Similarity=0.236 Sum_probs=126.1
Q ss_pred CHHHHhhcHHHHHHHHHHHhhccccceeecchHHHHHHh-CCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCch
Q 012908 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSL-GYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 319 (453)
Q Consensus 243 t~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~al-g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r 319 (453)
..+...+++|-|.+.+.++..-|+=+.+.+-+.+..++. |.++.+ ...++....+.+-|-.+|++|||++.+|.
T Consensus 210 ~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv--- 286 (417)
T COG2223 210 QLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRV--- 286 (417)
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhH---
Confidence 456678899999999999999999999988899888874 666544 58999999999999999999999987432
Q ss_pred hHHHHHHHHHHHHHHHHHhcc-------Cchh-----HHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhh
Q 012908 320 PVAMAVAQFVMAIGHIFLGMG-------WPGA-----MYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLAN 387 (453)
Q Consensus 320 ~~~l~~~~~~~~~~~ll~~~~-------~~~~-----l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~ 387 (453)
. .+....++++..++... .+.. .....+..|++.|+.|-..|-+-.+ +.|..=|++....
T Consensus 287 -~--~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-----~~G~v~G~vga~G 358 (417)
T COG2223 287 -T--LAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-----ETGAVTGIVGAIG 358 (417)
T ss_pred -H--HHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-----hhhHHHHHHHHhc
Confidence 2 22223333332222211 1111 3334556677778888877776654 7777777777777
Q ss_pred hhHhhhhcCcCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012908 388 PAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTT 437 (453)
Q Consensus 388 ~ig~~l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r~r 437 (453)
.+|.+.+...-. ..-+.++.|+..|.+....++++.++...++.|.|
T Consensus 359 ~lGGf~lp~~~g---~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r~~ 405 (417)
T COG2223 359 GLGGFFLPLAFG---VSLDLTGSYTGAFMLLLAFYLVALVLTWALYARRR 405 (417)
T ss_pred cccccchhHHHH---HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777665543000 00113457999999999999998888877777765
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.7e-06 Score=85.17 Aligned_cols=166 Identities=13% Similarity=0.150 Sum_probs=109.9
Q ss_pred hcHHHHHHHHHHHhhccccceeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHH
Q 012908 249 IKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVA 326 (453)
Q Consensus 249 ~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~ 326 (453)
+..-+|..++.+++.......+-....++.+++|.+..+ ..+++..+...++++.+|++.||+++|+ .+.+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~------~~~~~ 94 (434)
T PRK11663 21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARY------FMGIG 94 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCch------hHHHH
Confidence 334455555555544433333444566777888888654 4788999999999999999999998753 23444
Q ss_pred HHHHHHHHHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcCcCCCC
Q 012908 327 QFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSMPRVDE 401 (453)
Q Consensus 327 ~~~~~~~~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~~~~~~ 401 (453)
.++..++.++... .+...+.+.-++.|++.|..+.....++.|.|..|+.|+-.|+.. ++..+++.+.+....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~-- 172 (434)
T PRK11663 95 LIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL-- 172 (434)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 4444445444433 233345566678899999999999999999999888898888864 445555544442110
Q ss_pred CCcccCCcccHHHHHHHHHHHHHHHHH
Q 012908 402 PLKCEGSICYFLTSMIMSGLCIVAVIL 428 (453)
Q Consensus 402 ~~~C~G~~Cy~~~f~i~~~~~~~~~~l 428 (453)
.--+|..|.+.+.++++..+.
T Consensus 173 ------~~gw~~~f~~~~i~~~~~~~~ 193 (434)
T PRK11663 173 ------HYGWRYGMMIAGIIAIVVGLF 193 (434)
T ss_pred ------cccHHHHHHHHHHHHHHHHHH
Confidence 113899998887666554433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.1e-05 Score=82.74 Aligned_cols=165 Identities=12% Similarity=0.100 Sum_probs=114.8
Q ss_pred cHHHHHHHHHHHhhccccceeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHH
Q 012908 250 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 327 (453)
Q Consensus 250 s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~ 327 (453)
.+.+|.+-...++..-...++..-+..+.++.|.+... ..++...+...+|++.+|.+.||++||+ .+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~ 75 (382)
T PRK10091 2 KKVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKH------ILLFLV 75 (382)
T ss_pred cchHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHH------HHHHHH
Confidence 35667777766665555556666777788889987654 4899999999999999999999997742 233444
Q ss_pred HHHHHHHHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhh----hhHhhhhcCcCCCCC
Q 012908 328 FVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLAN----PAGSIFTSMPRVDEP 402 (453)
Q Consensus 328 ~~~~~~~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~----~ig~~l~~~~~~~~~ 402 (453)
++.+++.++... .+...+++.-++.|++.|......+.+++|++..++.++..+....+. .+|+.+.+....
T Consensus 76 ~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~--- 152 (382)
T PRK10091 76 ALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ--- 152 (382)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh---
Confidence 445555544433 445578888999999999999999999999999888888777754333 333333221100
Q ss_pred CcccCCcccHHHHHHHHHHHHHHHHH
Q 012908 403 LKCEGSICYFLTSMIMSGLCIVAVIL 428 (453)
Q Consensus 403 ~~C~G~~Cy~~~f~i~~~~~~~~~~l 428 (453)
..-+|.+|.+.+.++++..+.
T Consensus 153 -----~~gwr~~f~~~~~~~~~~~~~ 173 (382)
T PRK10091 153 -----EFSWRYTFLLIAVFNIAVLAS 173 (382)
T ss_pred -----hccHHHHHHHHHHHHHHHHHH
Confidence 113899999888776665543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=7.3e-05 Score=78.14 Aligned_cols=144 Identities=13% Similarity=0.086 Sum_probs=82.0
Q ss_pred hhcHHHHHHHHHHHhhccccceeec-chHHHHHH-hCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHH
Q 012908 248 LIKADFWLIFFSLLLGSGSGLTVID-NLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 323 (453)
Q Consensus 248 l~s~~FWll~~~~~~~~g~gl~~i~-n~~~i~~a-lg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l 323 (453)
.++++.|.......+....+...+. ....+.++ +|.+..+ ....+.++++.+|++.+|+++||++||+ ....
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~----~~~~ 309 (434)
T PRK15075 234 AANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRP----VLIA 309 (434)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH----HHHH
Confidence 3445556543333332333333333 35555555 6877543 3556788999999999999999998742 1111
Q ss_pred HHHHHHHHHHHHH--HhccCc--hhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH-h----hhhhhHhhhh
Q 012908 324 AVAQFVMAIGHIF--LGMGWP--GAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL-T----LANPAGSIFT 394 (453)
Q Consensus 324 ~~~~~~~~~~~ll--~~~~~~--~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~-~----la~~ig~~l~ 394 (453)
. .........+. +....+ ..+.....+.|+++|...+.....++|.+..+.-|+-.|+. . ++..++|++.
T Consensus 310 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~ 388 (434)
T PRK15075 310 F-TVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAIS 388 (434)
T ss_pred H-HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHH
Confidence 1 11111111111 111222 12333456678888888888888899999988777776663 2 2244566666
Q ss_pred cC
Q 012908 395 SM 396 (453)
Q Consensus 395 ~~ 396 (453)
+.
T Consensus 389 g~ 390 (434)
T PRK15075 389 TW 390 (434)
T ss_pred HH
Confidence 53
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.1e-05 Score=84.14 Aligned_cols=149 Identities=12% Similarity=0.055 Sum_probs=103.2
Q ss_pred ccceeecchHHHHHHhCCChh--hHHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cCc
Q 012908 266 SGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWP 342 (453)
Q Consensus 266 ~gl~~i~n~~~i~~alg~~~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~-~~~ 342 (453)
...++...+.+|.++++.+.. ...++++.++..+|++.+|.++||++||+ .+.....+..++.++... .+.
T Consensus 31 ~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~------~l~~~~~~~~~~~~~~~~a~~~ 104 (413)
T PRK15403 31 TTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRP------VLITGALIFTLACAATLFTTSM 104 (413)
T ss_pred HHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchH------HHHHHHHHHHHHHHHHHHcCCH
Confidence 445666777788899988754 34899999999999999999999998853 223334444445444433 344
Q ss_pred hhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcC-cCCCCCCcccCCcccHHHHHH
Q 012908 343 GAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSM-PRVDEPLKCEGSICYFLTSMI 417 (453)
Q Consensus 343 ~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~-~~~~~~~~C~G~~Cy~~~f~i 417 (453)
..++++-++.|++.|........+++|.|..++-++..++.. +++.+|+.+-+. .+. .-+|..|++
T Consensus 105 ~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~---------~gw~~~f~~ 175 (413)
T PRK15403 105 TQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF---------VHWKVLFAI 175 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cCHHHHHHH
Confidence 467788899999888777777788999999777777766543 444555443322 111 138999998
Q ss_pred HHHHHHHHHHHH
Q 012908 418 MSGLCIVAVILS 429 (453)
Q Consensus 418 ~~~~~~~~~~l~ 429 (453)
.++..+++.+..
T Consensus 176 ~~~~~~i~~~~~ 187 (413)
T PRK15403 176 IAVMGLIAFVGL 187 (413)
T ss_pred HHHHHHHHHHHH
Confidence 888777665544
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.2e-05 Score=79.22 Aligned_cols=162 Identities=8% Similarity=0.051 Sum_probs=99.1
Q ss_pred HHHhhcHHHHHHHHHHHhhccccceeecchHHH-HH-HhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchh
Q 012908 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQM-SQ-SLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (453)
Q Consensus 245 ~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i-~~-alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~ 320 (453)
++.+++++||...+..++..+.-....+-.... .+ ..|.++.. ...+.+.++..+||+..|.+.||+++|+.
T Consensus 252 ~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~---- 327 (438)
T PRK10133 252 SRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV---- 327 (438)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH----
Confidence 467899999987776666554433223323323 34 35777543 47889999999999999999999977421
Q ss_pred HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH---hhhhhhHhhhhcC-
Q 012908 321 VAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL---TLANPAGSIFTSM- 396 (453)
Q Consensus 321 ~~l~~~~~~~~~~~ll~~~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~---~la~~ig~~l~~~- 396 (453)
+.....+.+++.++....+.........+.|++.|..++..-+...+.+| |+-++-=+++ ..+..+++.+.+.
T Consensus 328 --l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~glg~~~i~P~~~s~a~~~~~-~~~~~as~l~~~~~~g~~~~~~i~G~l 404 (438)
T PRK10133 328 --LAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLG-QDTKYGSSFIVMTIIGGGIVTPVMGFV 404 (438)
T ss_pred --HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHcccc-hhhccchhHHhHHhccchHHHHHHHHH
Confidence 12222222233322222221223457788999999999999999999998 5444433333 3445566666554
Q ss_pred cCCCCCCcccCCcccHHHHHHHHHH
Q 012908 397 PRVDEPLKCEGSICYFLTSMIMSGL 421 (453)
Q Consensus 397 ~~~~~~~~C~G~~Cy~~~f~i~~~~ 421 (453)
.+.. | ..+.+|++....
T Consensus 405 ~~~~------g--~~~~~~~v~~~~ 421 (438)
T PRK10133 405 SDAA------G--NIPTAELIPALC 421 (438)
T ss_pred HHhc------c--chHHHHHHHHHH
Confidence 2221 2 156777655433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.23 E-value=4e-06 Score=83.61 Aligned_cols=164 Identities=10% Similarity=-0.033 Sum_probs=105.1
Q ss_pred HHHHHHHHHhhccccceeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHH
Q 012908 253 FWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVM 330 (453)
Q Consensus 253 FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~ 330 (453)
||+++...++......+....+.....+.+.++.. ...++..+...++.+.+|.++||++||+- +....++.
T Consensus 1 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~------~~~~~~~~ 74 (365)
T TIGR00900 1 FRLLFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKV------MIGADLIR 74 (365)
T ss_pred CeehHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHH------HHHHHHHH
Confidence 45556555555444444444455566677776543 47888899999999999999999987531 22222322
Q ss_pred HHHHHHH-hcc-----CchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhh----hhhhHhhhhcC-cCC
Q 012908 331 AIGHIFL-GMG-----WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTL----ANPAGSIFTSM-PRV 399 (453)
Q Consensus 331 ~~~~ll~-~~~-----~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~l----a~~ig~~l~~~-~~~ 399 (453)
.++.++. ... +...+++...+.|++.|.......++++|++..++.++.+|+... +..+|+.+.+. .+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~- 153 (365)
T TIGR00900 75 AVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA- 153 (365)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-
Confidence 2222221 111 344677888999999999999999999999998999988888643 33344333222 11
Q ss_pred CCCCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 012908 400 DEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 431 (453)
Q Consensus 400 ~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~ 431 (453)
..-++.+|.+.+..++++.+....
T Consensus 154 --------~~g~~~~~~~~~~~~~~~~~~~~~ 177 (365)
T TIGR00900 154 --------TLGIKWAIWVDAVGFAISALLIVS 177 (365)
T ss_pred --------HhhHHHHHHHHHHHHHHHHHHHHh
Confidence 112788888877666555444433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.6e-05 Score=79.63 Aligned_cols=143 Identities=10% Similarity=-0.060 Sum_probs=90.3
Q ss_pred HHHhhcHHHHHHHHHHHhhccccceeecchHHHHHH-hCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhH
Q 012908 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 321 (453)
Q Consensus 245 ~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~a-lg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~ 321 (453)
.+.+|++.|+...+..++...+-........+..|. .|+++.+ .+....++...++.+..|.+.||+++|+
T Consensus 253 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~------ 326 (495)
T PRK14995 253 MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRL------ 326 (495)
T ss_pred HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH------
Confidence 467788888877766665443322222333334443 5777543 3677788999999999999999987631
Q ss_pred HHHHHHHHHHHHHHHHh---c-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH----hhhhhhHhhh
Q 012908 322 AMAVAQFVMAIGHIFLG---M-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL----TLANPAGSIF 393 (453)
Q Consensus 322 ~l~~~~~~~~~~~ll~~---~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~----~la~~ig~~l 393 (453)
.+....++++++..++. . .+....++..++.|+++|..+......+.+....++.|.-.++. .+|..+|+.+
T Consensus 327 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai 406 (495)
T PRK14995 327 VATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAI 406 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 22333444444443322 1 12224566788899999998887777788888877777766664 2444444433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=98.22 E-value=1e-05 Score=80.94 Aligned_cols=150 Identities=16% Similarity=0.182 Sum_probs=101.6
Q ss_pred chHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHHH
Q 012908 273 NLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGT 349 (453)
Q Consensus 273 n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~-~~~~~l~~~~ 349 (453)
-..++.+++|.++.+ ...++..+...++++.+|.++||++||+.. .+...+.+++.++... .+...+++..
T Consensus 25 ~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (377)
T TIGR00890 25 LAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVA------MLGGILYGLGFTFYAIADSLAALYLTY 98 (377)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchh------HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778887654 488999999999999999999999886432 3334444445444333 3344577778
Q ss_pred HHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhhhhHhhhhcCcCCCCCCcccCCcccHHHHHHHHHHHHHHHHHH
Q 012908 350 LLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILS 429 (453)
Q Consensus 350 ~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~ig~~l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~ 429 (453)
.+.|++.|..+......+.++|. |+-|+..++...+..+|+.+.+..... -....-+|..|.+.+.++++..+..
T Consensus 99 ~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~f~~~~~~~~~~~~~~ 173 (377)
T TIGR00890 99 GLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITS----VINLEGVPAAFIYMGIIFLLVIVLG 173 (377)
T ss_pred HHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHH----HHhcccHHHHHHHHHHHHHHHHHHH
Confidence 89999999988888888999996 778888888766555544332210000 0001248999999888887766665
Q ss_pred HHHH
Q 012908 430 MILV 433 (453)
Q Consensus 430 l~l~ 433 (453)
..+.
T Consensus 174 ~~~~ 177 (377)
T TIGR00890 174 AFLI 177 (377)
T ss_pred HHhe
Confidence 5443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=8e-06 Score=87.35 Aligned_cols=164 Identities=18% Similarity=0.273 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhhccccceeecchHHHH-HHhCCChhh--HHHHHHHHhhhhccccccchhhhh-hhccCCchhHHHHHH
Q 012908 251 ADFWLIFFSLLLGSGSGLTVIDNLGQMS-QSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEII-VRDYAYPRPVAMAVA 326 (453)
Q Consensus 251 ~~FWll~~~~~~~~g~gl~~i~n~~~i~-~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l-~~~~~~~r~~~l~~~ 326 (453)
+.+|.++...++...+--++..-+.... +.+|+++.+ ...+.+.+...++.+.+|+++||+ +||+ .+.+.
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr------~iliG 82 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRM------AVMLG 82 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHH------HHHHH
Confidence 3355555444443322222222222222 346887654 377888889999999999999998 7742 23455
Q ss_pred HHHHHHHHHHHhcc--CchhHHHHHHHHHhhhhhhcchhHHHHHHhhccc------chhhhhhhHhhhhhhHhhhhcCcC
Q 012908 327 QFVMAIGHIFLGMG--WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLK------KFGALYNFLTLANPAGSIFTSMPR 398 (453)
Q Consensus 327 ~~~~~~~~ll~~~~--~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k------~fg~~yg~~~la~~ig~~l~~~~~ 398 (453)
.+++.++++++... .+..++++..+++++.|...+..+++++|.|..+ -|+..|....++..++|++.+...
T Consensus 83 ~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~ 162 (493)
T PRK15462 83 ALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ 162 (493)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH
Confidence 56666776655432 2234666667778888988898999999999764 277888888888888888776521
Q ss_pred CCCCCcccCCcccHHHHHHHHHHHHHHHHH
Q 012908 399 VDEPLKCEGSICYFLTSMIMSGLCIVAVIL 428 (453)
Q Consensus 399 ~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l 428 (453)
. ...|+..|.+.+...+++.+.
T Consensus 163 ~--------~~Gw~~~F~iaaigm~l~li~ 184 (493)
T PRK15462 163 E--------EYSWAMGFGLAAVGMIAGLVI 184 (493)
T ss_pred h--------hhChHHHHHHHHHHHHHHHHH
Confidence 1 124999998866544444443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.2e-05 Score=77.37 Aligned_cols=149 Identities=15% Similarity=0.056 Sum_probs=87.4
Q ss_pred HHHHhhcHHHHHHHHHHHhhccccceeecchHHHHHHhCCChhhH--HHHHHHHhhhhccccccchhhhhhhccCCchhH
Q 012908 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 321 (453)
Q Consensus 244 ~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~~--~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~ 321 (453)
.++.++++++|...+.+.+..+.-..+.+....+.++.|++.... ......++..+|++..+.+.||+++++.. +
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~-~-- 272 (401)
T PRK11043 196 FKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLL-P-- 272 (401)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH-H--
Confidence 456778888887776665554433334444455566677775432 34455677788888888888888664321 1
Q ss_pred HHHHHHHHHHHHHHHHhc--c-CchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhh
Q 012908 322 AMAVAQFVMAIGHIFLGM--G-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFT 394 (453)
Q Consensus 322 ~l~~~~~~~~~~~ll~~~--~-~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~ 394 (453)
...+...+..+...++.. . ....+.++..+.|+++|..+........+.+. ++-|+..|+.. .+.++++.+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~ 351 (401)
T PRK11043 273 WLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLV 351 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222222222211 1 12234456677888999888887777777775 56677666653 3445555555
Q ss_pred cC
Q 012908 395 SM 396 (453)
Q Consensus 395 ~~ 396 (453)
+.
T Consensus 352 g~ 353 (401)
T PRK11043 352 SA 353 (401)
T ss_pred HH
Confidence 54
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.6e-06 Score=81.66 Aligned_cols=126 Identities=17% Similarity=0.248 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhhccccceeecchHH-HHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHH
Q 012908 252 DFWLIFFSLLLGSGSGLTVIDNLGQ-MSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQF 328 (453)
Q Consensus 252 ~FWll~~~~~~~~g~gl~~i~n~~~-i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~ 328 (453)
.||..++.+++......++..-..+ +.+++|.++.+ ...++..+...++.+.+|.++||++||+ .+.+..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~ 75 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRY------TTTLSLL 75 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchH------HHHHHHH
Confidence 5898888888776666665555554 67788988754 4788999999999999999999998752 2344555
Q ss_pred HHHHHHHHHhc-c-CchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh
Q 012908 329 VMAIGHIFLGM-G-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT 384 (453)
Q Consensus 329 ~~~~~~ll~~~-~-~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~ 384 (453)
+++++.+++.. . +...+++..++.|++.| .+.....+++|++..|+-++..++..
T Consensus 76 ~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~ 132 (366)
T TIGR00886 76 LLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAA 132 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHH
Confidence 55666555433 3 34456778888899855 55667788999999888888777654
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.9e-05 Score=81.45 Aligned_cols=166 Identities=12% Similarity=-0.005 Sum_probs=109.7
Q ss_pred cHHHHHHHHHHHhhcc----ccceeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHH
Q 012908 250 KADFWLIFFSLLLGSG----SGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 323 (453)
Q Consensus 250 s~~FWll~~~~~~~~g----~gl~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l 323 (453)
++++|++.+.+.+... ..-++.....++.++++.+... ..++...+...++.+..|.++||++||+ .+
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~------~l 81 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRP------VM 81 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH------HH
Confidence 3667776666666554 3344555667788888887654 4788899999999999999999998752 22
Q ss_pred HHHHHHHHHHHHHHh-ccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH----hhhhhhHhhhhcCcC
Q 012908 324 AVAQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL----TLANPAGSIFTSMPR 398 (453)
Q Consensus 324 ~~~~~~~~~~~ll~~-~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~----~la~~ig~~l~~~~~ 398 (453)
.+...+..++.++.. ..+...+++...+.|++.|......+..+.|.|..++-++..++. .++..+|+.+.+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 161 (406)
T PRK15402 82 LAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALI 161 (406)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444443332 334446777889999999999889999999999866544444443 344455555433210
Q ss_pred CCCCCcccCCcccHHHHHHHHHHHHHHHHHH
Q 012908 399 VDEPLKCEGSICYFLTSMIMSGLCIVAVILS 429 (453)
Q Consensus 399 ~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~ 429 (453)
. ...++.+|++.+++++++.+..
T Consensus 162 ~--------~~~w~~~~~~~~~~~~~~~~~~ 184 (406)
T PRK15402 162 H--------VLPWRGMFVLFAALAALSFFGL 184 (406)
T ss_pred H--------ccCccHHHHHHHHHHHHHHHHH
Confidence 0 1238889988887777665543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.5e-05 Score=80.42 Aligned_cols=164 Identities=13% Similarity=0.136 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHhhccccceeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHH
Q 012908 251 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQF 328 (453)
Q Consensus 251 ~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~ 328 (453)
+-+|..++.+++..+...+.-....++.+++|.++.+ ...++..+...+|.+.+|.++||++||+ .+....+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~------~~~~~~~ 80 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKR------QLIFGFA 80 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH------HHHHHHH
Confidence 5577777777766665545555567788888888654 4778889999999999999999998853 2233444
Q ss_pred HHHHHHHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcC-cCCCCC
Q 012908 329 VMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSM-PRVDEP 402 (453)
Q Consensus 329 ~~~~~~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~-~~~~~~ 402 (453)
+.+++.++... .+...+++.-.+.|++.|..++.....+.|.|..|+-+...++.. ++..+++.+.+. .+.
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--- 157 (394)
T PRK03699 81 LMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR--- 157 (394)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 44455444433 334456778889999999999999999999998777777666543 344454544332 111
Q ss_pred CcccCCcccHHHHHHHHHHHHHHHHH
Q 012908 403 LKCEGSICYFLTSMIMSGLCIVAVIL 428 (453)
Q Consensus 403 ~~C~G~~Cy~~~f~i~~~~~~~~~~l 428 (453)
...+|.+|.+.+.++++..++
T Consensus 158 -----~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 158 -----SIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred -----cccHHHHHHHHHHHHHHHHHH
Confidence 124899998877766554443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.8e-05 Score=78.07 Aligned_cols=164 Identities=23% Similarity=0.383 Sum_probs=111.3
Q ss_pred HHHHHHHHhhccccceeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHH
Q 012908 254 WLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMA 331 (453)
Q Consensus 254 Wll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~ 331 (453)
|.+....++..............+.++.|.++.+ ...++..+...++++.+|.++||++||+ .+.....+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~------~~~~~~~~~~ 75 (352)
T cd06174 2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRR------VLLLGLLLFA 75 (352)
T ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCch------hhHHHHHHHH
Confidence 4444544444433334444455666777777543 3778889999999999999999998754 2344455555
Q ss_pred HHHHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcC-cCCCCCCcc
Q 012908 332 IGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSM-PRVDEPLKC 405 (453)
Q Consensus 332 ~~~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~-~~~~~~~~C 405 (453)
++.++... .+...+++...+.|++.|..+...++++.|++..|+.++..++.. ++..+|+.+.+. .+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------ 149 (352)
T cd06174 76 LGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES------ 149 (352)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 55544333 344567788999999999999999999999999889888888865 344444443332 111
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHH
Q 012908 406 EGSICYFLTSMIMSGLCIVAVILSMIL 432 (453)
Q Consensus 406 ~G~~Cy~~~f~i~~~~~~~~~~l~l~l 432 (453)
.-++..|.+.+...+++.++...+
T Consensus 150 ---~~~~~~~~~~~~~~~~~~~~~~~~ 173 (352)
T cd06174 150 ---LGWRWLFLILAILGLLLALLLLFL 173 (352)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 127888888887777766655443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.5e-05 Score=83.40 Aligned_cols=146 Identities=12% Similarity=0.101 Sum_probs=98.1
Q ss_pred HHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-----cCchhHHH
Q 012908 275 GQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-----GWPGAMYV 347 (453)
Q Consensus 275 ~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~-----~~~~~l~~ 347 (453)
.+..++.|.++.+ ...++..+...+|.+.+|+++||+++|+-. ....++.+++.+++.. .+...+++
T Consensus 50 ~p~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 123 (438)
T TIGR00712 50 MPYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFL------PAGLILSAAVMLLMGFVPWATSSIAIMFV 123 (438)
T ss_pred hHHHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceeh------HHHHHHHHHHHHHHhccccccchHHHHHH
Confidence 3445566777654 378899999999999999999999875322 2333444444433322 11224556
Q ss_pred HHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhh----hhhHhhhhcCcCCCCCCcccCCcccHHHHHHHHHHHH
Q 012908 348 GTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLA----NPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCI 423 (453)
Q Consensus 348 ~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la----~~ig~~l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~ 423 (453)
.-.+.|++.|..++.....+.|+|..|+-|+..|+...+ ..+++.+.+.... ...-+|.+|++.+..++
T Consensus 124 ~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~-------~~~~w~~~f~~~~~~~~ 196 (438)
T TIGR00712 124 LLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMA-------WFNDWHAALYFPAICAI 196 (438)
T ss_pred HHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHH-------HhhhhHHHHHHHHHHHH
Confidence 677889999999999999999999989999888886543 4444443332100 01238999999888887
Q ss_pred HHHHHHHHHH
Q 012908 424 VAVILSMILV 433 (453)
Q Consensus 424 ~~~~l~l~l~ 433 (453)
+..++..++.
T Consensus 197 i~~~~~~~~~ 206 (438)
T TIGR00712 197 IVALFAFAMM 206 (438)
T ss_pred HHHHHHHHhc
Confidence 7666655544
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.9e-06 Score=82.71 Aligned_cols=143 Identities=14% Similarity=0.154 Sum_probs=100.0
Q ss_pred HHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHh-ccCchhHHHHHHH
Q 012908 275 GQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGWPGAMYVGTLL 351 (453)
Q Consensus 275 ~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~~l~~~~~l 351 (453)
.++.+++|.++.. ...++..+.+.++.+.+|.++||++||+.. ....++.+++.+++. ..+...+++..++
T Consensus 18 ~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 91 (399)
T TIGR00893 18 PMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTL------AVFIVIWGVFTGLQAFAGAYVSLYILRVL 91 (399)
T ss_pred HHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceee------HHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 3455677877654 488899999999999999999999876433 223333344443332 2344567788899
Q ss_pred HHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHH
Q 012908 352 IGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAV 426 (453)
Q Consensus 352 iG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~ 426 (453)
.|++.|..+...+.+++|++..|+-++..|+.. ++..+|+.+.+. .+. ..++..|.+.+.++++..
T Consensus 92 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~ 162 (399)
T TIGR00893 92 LGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH---------FSWQWAFIIEGVLGIIWG 162 (399)
T ss_pred HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh---------CCchHHHHHHHHHHHHHH
Confidence 999999999999999999999888888888765 344444444332 111 128899988887776665
Q ss_pred HHHHHH
Q 012908 427 ILSMIL 432 (453)
Q Consensus 427 ~l~l~l 432 (453)
++...+
T Consensus 163 ~~~~~~ 168 (399)
T TIGR00893 163 VLWLKF 168 (399)
T ss_pred HHhhhe
Confidence 554443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=1e-05 Score=83.58 Aligned_cols=158 Identities=12% Similarity=0.120 Sum_probs=107.3
Q ss_pred cHHHHHHHHHHHhhccccceeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHH
Q 012908 250 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 327 (453)
Q Consensus 250 s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~ 327 (453)
+++||.+++..++..-...++.....++.++++.++.. ..++.+.+...++-+.+|.+.||++||+-. ....
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl------~~~~ 75 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVM------FIAN 75 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhh------HHHH
Confidence 56899999998887655555566666777888876543 477888899999999999999999886432 2233
Q ss_pred HHHHHHHHHHhccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcC-cCCCCC
Q 012908 328 FVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSM-PRVDEP 402 (453)
Q Consensus 328 ~~~~~~~ll~~~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~-~~~~~~ 402 (453)
++..++.+++.... ..++.-++.|++.|......-++++|++..++.++..|++. ++..+||.+-+. .+.
T Consensus 76 ~~~~~~~~~~~~~~--~~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~--- 150 (393)
T PRK11195 76 GIKLLGCLLMLFGI--HPLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP--- 150 (393)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 33333333221111 12456678999999999999999999999999999999864 334444444332 110
Q ss_pred CcccCCcccHHHHHHHHHHHHHH
Q 012908 403 LKCEGSICYFLTSMIMSGLCIVA 425 (453)
Q Consensus 403 ~~C~G~~Cy~~~f~i~~~~~~~~ 425 (453)
. ++.++.+.+.+.+++
T Consensus 151 -----~--~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 151 -----H--AEAALAVCALIYLLA 166 (393)
T ss_pred -----H--HHHHHHHHHHHHHHH
Confidence 1 666666665544444
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.8e-05 Score=80.33 Aligned_cols=149 Identities=15% Similarity=0.182 Sum_probs=105.0
Q ss_pred eeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHh-ccCchhH
Q 012908 269 TVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGWPGAM 345 (453)
Q Consensus 269 ~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~~l 345 (453)
++.....++.+++|.++.+ ...++..+...+|++.+|.++||++||+ .+....++..++.+++. ..+...+
T Consensus 9 ~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~------~~~~~~~~~~i~~~~~~~~~~~~~~ 82 (377)
T PRK11102 9 MYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKP------VILGGTLVFALAAVACALAQTIDQL 82 (377)
T ss_pred HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChH------HHHHHHHHHHHHHHHHHHHccHHHH
Confidence 3456677888888888654 4788999999999999999999987642 23334444444444433 2344467
Q ss_pred HHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcC-cCCCCCCcccCCcccHHHHHHHHH
Q 012908 346 YVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSM-PRVDEPLKCEGSICYFLTSMIMSG 420 (453)
Q Consensus 346 ~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~ 420 (453)
++...+.|++.|.......+++.|.+..++.++..|+.. ++..+|+.+.+. .+. --++.+|.+.+.
T Consensus 83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---------~~~~~~~~~~~~ 153 (377)
T PRK11102 83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW---------FSWHAIFWVLAL 153 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------cChHHHHHHHHH
Confidence 778899999999999999999999999888888888864 344444444332 111 127889988887
Q ss_pred HHHHHHHHHHHH
Q 012908 421 LCIVAVILSMIL 432 (453)
Q Consensus 421 ~~~~~~~l~l~l 432 (453)
+++++.++..+.
T Consensus 154 ~~~~~~~~~~~~ 165 (377)
T PRK11102 154 AAILAAALVFFF 165 (377)
T ss_pred HHHHHHHHHHHh
Confidence 777766655443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.5e-05 Score=79.19 Aligned_cols=141 Identities=18% Similarity=0.147 Sum_probs=95.3
Q ss_pred HHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHh-ccCchhHHHHHHH
Q 012908 275 GQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGWPGAMYVGTLL 351 (453)
Q Consensus 275 ~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~~l~~~~~l 351 (453)
.++.+++|.++.+ ...+...+...+|.+..|.++||++||+.. .....+..++.++.. ..+...+.+.-++
T Consensus 39 ~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 112 (406)
T PRK11551 39 PRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRIL------IVSVALFGLFSLATAQAWDFPSLLVARLL 112 (406)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH------HHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3566778887654 478889999999999999999999885322 222333333333322 3444567778899
Q ss_pred HHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhhhhHhh----hhcCcCCCCCCcccCCcccHHHHHHHHHHHHHHHH
Q 012908 352 IGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSI----FTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVI 427 (453)
Q Consensus 352 iG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~ig~~----l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~ 427 (453)
.|++.|..+....+++.|.|..|+-++..|+...+..+|.. +...... ...++..|.+.+.+.++..+
T Consensus 113 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 184 (406)
T PRK11551 113 TGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAG--------DAAWRHIFYVGGVGPLLLVP 184 (406)
T ss_pred HHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------ccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988889888876544444433 3221111 12388888887765555444
Q ss_pred HH
Q 012908 428 LS 429 (453)
Q Consensus 428 l~ 429 (453)
+.
T Consensus 185 ~~ 186 (406)
T PRK11551 185 LL 186 (406)
T ss_pred HH
Confidence 33
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.1e-05 Score=78.50 Aligned_cols=163 Identities=10% Similarity=0.129 Sum_probs=107.7
Q ss_pred HHHHHHHHHhhccccceeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHH
Q 012908 253 FWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVM 330 (453)
Q Consensus 253 FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~ 330 (453)
.|++....+++.....+++....++.+++|.++.+ ...+...+...++.+.+|.++||++||+. +.+...+.
T Consensus 10 l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~------~~~~~~~~ 83 (394)
T PRK11652 10 LFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPV------ILVGMSIF 83 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHH------HHHHHHHH
Confidence 34444555555544455666678888999988654 47889999999999999999999987532 23333444
Q ss_pred HHHHHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhh----hhhHhhhhcCcCCCCCCcc
Q 012908 331 AIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLA----NPAGSIFTSMPRVDEPLKC 405 (453)
Q Consensus 331 ~~~~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la----~~ig~~l~~~~~~~~~~~C 405 (453)
.++.++... .+...+.+..++.|++.|........++.|.+..++.+...++..++ ..+|+.+.+....
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~------ 157 (394)
T PRK11652 84 ILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT------ 157 (394)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 444443332 33446777888999999988888888899998878888877765433 3344443332100
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHH
Q 012908 406 EGSICYFLTSMIMSGLCIVAVILS 429 (453)
Q Consensus 406 ~G~~Cy~~~f~i~~~~~~~~~~l~ 429 (453)
...+|.+|.+.+...++..++.
T Consensus 158 --~~g~~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK11652 158 --LFGWRACYLFLLLLGAGVTFSM 179 (394)
T ss_pred --ccChHHHHHHHHHHHHHHHHHH
Confidence 1138999988776665544443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.7e-05 Score=80.09 Aligned_cols=167 Identities=16% Similarity=0.161 Sum_probs=103.7
Q ss_pred HHHHHHHHHhhccccceee---cchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHH
Q 012908 253 FWLIFFSLLLGSGSGLTVI---DNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 327 (453)
Q Consensus 253 FWll~~~~~~~~g~gl~~i---~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~ 327 (453)
-|.++...++....-.+.. ...-+..++.|.++.+ ..++...+...++.+.+|+++||+++|+ .+.+..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~------~l~~~~ 100 (452)
T PRK11273 27 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV------FLPAGL 100 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCch------hHHHHH
Confidence 3666666655433322221 1122223333776554 3789999999999999999999998853 233444
Q ss_pred HHHHHHHHHHhcc-----CchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhhhhHh----hhhc-Cc
Q 012908 328 FVMAIGHIFLGMG-----WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGS----IFTS-MP 397 (453)
Q Consensus 328 ~~~~~~~ll~~~~-----~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~ig~----~l~~-~~ 397 (453)
++.+++.+++... +...+++...+.|++.|..++....++.|+|..|+-|+..|+...+..+|. .+.. ..
T Consensus 101 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~ 180 (452)
T PRK11273 101 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGM 180 (452)
T ss_pred HHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4444444443321 222456667888999999888888889999998889998888654444332 2211 10
Q ss_pred CCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 012908 398 RVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 433 (453)
Q Consensus 398 ~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~ 433 (453)
.. ..-+|.+|++.+.++++..++.+++.
T Consensus 181 ~~--------~~gw~~~f~i~~~~~~~~~~l~~~~~ 208 (452)
T PRK11273 181 AW--------FNDWHAALYMPAFAAILVALFAFAMM 208 (452)
T ss_pred HH--------hccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 00 11388999988877777655555444
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00014 Score=77.83 Aligned_cols=138 Identities=16% Similarity=0.098 Sum_probs=89.8
Q ss_pred CCCHHHHhhcHHHHHHHHHHHhhccccceeecchHHHHHH-hCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCC
Q 012908 241 DFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAY 317 (453)
Q Consensus 241 ~~t~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~a-lg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~ 317 (453)
-..++|+++++..|.+.+..+|.....-...+-...+.++ .|++..+ .+-..+.+.+.+|=+++|++|||+... ..
T Consensus 263 ~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~-~~ 341 (495)
T KOG2533|consen 263 WKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTI-FA 341 (495)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhh-HH
Confidence 3478899999999999999999988877777777788887 3466543 366788899999999999999997410 11
Q ss_pred chhHHHHHHHHHHHHHHHHHhccC-chhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh
Q 012908 318 PRPVAMAVAQFVMAIGHIFLGMGW-PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT 384 (453)
Q Consensus 318 ~r~~~l~~~~~~~~~~~ll~~~~~-~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~ 384 (453)
.|..+....++.+.+|+..+.... +...+.+ +-+|......+.++.+.+=-++.+-|++-+.
T Consensus 342 ~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~ 404 (495)
T KOG2533|consen 342 RRLLFIVFLCLYAIIGAISLLAAAVLPGAYGA-----FLIGPYGLIATAIIALSWTSANLAGNTKALT 404 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHhHH-----HHhcchhhHHHHHHHHhhccccccchHHhHH
Confidence 233444556666777754433322 2222222 2222333344455555565566666776653
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0001 Score=76.21 Aligned_cols=168 Identities=10% Similarity=-0.056 Sum_probs=86.9
Q ss_pred HHHhhcHHHHHHHHHHHhhccccceeecchHHHHHHh-CCChhhH----HHHHHHHhhhhccccccchhhhhhhccCCch
Q 012908 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSL-GYDNTHI----FVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 319 (453)
Q Consensus 245 ~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~al-g~~~~~~----~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r 319 (453)
++.+++++||.+.+..++.......+.....+..... +.+.... ..++.++.....+...|.+.||.++ |
T Consensus 200 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~-----~ 274 (395)
T PRK10054 200 SVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANI-----R 274 (395)
T ss_pred hhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCc-----h
Confidence 4678899999888776665444333333333333322 2222222 3333333333444444555554433 2
Q ss_pred hHHHHHHHHHHHHHHHHHhc--cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhh---HhhhhhhHhhhh
Q 012908 320 PVAMAVAQFVMAIGHIFLGM--GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNF---LTLANPAGSIFT 394 (453)
Q Consensus 320 ~~~l~~~~~~~~~~~ll~~~--~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~---~~la~~ig~~l~ 394 (453)
. .+.....++.++.+.+.. .+...+.++.++.|++++...+.....+.+.-..+.-|+-+|. ..++..+||.+.
T Consensus 275 ~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~Gp~~~ 353 (395)
T PRK10054 275 P-LMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQSLGWLGAAINPLVS 353 (395)
T ss_pred h-HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHHHHHHHHHHHHHHH
Confidence 2 233344445555544432 2222355677788888887777766667666555555555553 335667777766
Q ss_pred cC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHH
Q 012908 395 SM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVI 427 (453)
Q Consensus 395 ~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~ 427 (453)
+. .|.. -+...|.+.+....++.+
T Consensus 354 G~l~~~~---------g~~~~~~~~~~~~~~~~~ 378 (395)
T PRK10054 354 GVILTTL---------PPWSLFVILALAIVAAWL 378 (395)
T ss_pred HHHHHHc---------ChhhHHHHHHHHHHHHHH
Confidence 64 2221 256666665444433333
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.5e-05 Score=79.04 Aligned_cols=142 Identities=11% Similarity=0.161 Sum_probs=101.6
Q ss_pred hHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHHHH
Q 012908 274 LGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTL 350 (453)
Q Consensus 274 ~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~-~~~~~l~~~~~ 350 (453)
..++.+++|.++.+ ..+++..+...++.+.+|.+.||++||+ .+.....+.+++.++... .+...+.+.-+
T Consensus 32 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 105 (390)
T PRK03545 32 LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRK------LLIGLFVLFIASHVLSALAWNFTVLLISRI 105 (390)
T ss_pred hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH------HHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 57788888988654 3788889999999999999999998852 334445555555554433 44456777888
Q ss_pred HHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhhh----hHhhhhcC-cCCCCCCcccCCcccHHHHHHHHHHHHHH
Q 012908 351 LIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANP----AGSIFTSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVA 425 (453)
Q Consensus 351 liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~----ig~~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~ 425 (453)
+.|++.|..+.....+++|.+..++-++..|+...+.. +|+.+.+. .+ .-.+|.+|.+.+.++++.
T Consensus 106 ~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~---------~~gw~~~f~~~~~~~~l~ 176 (390)
T PRK03545 106 GIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQ---------YLGWRTTFLAIGGGALIT 176 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH---------HhcHHHHHHHHHHHHHHH
Confidence 99999999999999999999998899999888754433 33333221 11 113899999988877666
Q ss_pred HHHHH
Q 012908 426 VILSM 430 (453)
Q Consensus 426 ~~l~l 430 (453)
.+...
T Consensus 177 ~~~~~ 181 (390)
T PRK03545 177 LLLLI 181 (390)
T ss_pred HHHHH
Confidence 54443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.5e-05 Score=81.74 Aligned_cols=171 Identities=12% Similarity=0.040 Sum_probs=107.4
Q ss_pred CHHHHhhcHHHHHHHHHHHhhccccceeecchHHHHHHhCCChhhH--HHHHHH-HhhhhccccccchhhhhhhccCCch
Q 012908 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI--FVSMIS-IWNFLGRVGGGYFSEIIVRDYAYPR 319 (453)
Q Consensus 243 t~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~~--~Vsl~s-i~n~~GRl~~G~lsD~l~~~~~~~r 319 (453)
+.++.+|++.+|......++...+...+..-..+..+++|+++... ..++.+ +...+|.+..|.+.||+++++.
T Consensus 200 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~--- 276 (390)
T TIGR02718 200 SLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRT--- 276 (390)
T ss_pred HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHH---
Confidence 4678899999998887766665444444445566778889887653 444454 4677889999999999977422
Q ss_pred hHHHHHHHHHHHHH-HHHH--hc----cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcc-cchhhhhhhH----hhhh
Q 012908 320 PVAMAVAQFVMAIG-HIFL--GM----GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGL-KKFGALYNFL----TLAN 387 (453)
Q Consensus 320 ~~~l~~~~~~~~~~-~ll~--~~----~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~-k~fg~~yg~~----~la~ 387 (453)
.. ...++..+. .+.+ .. ..+..++....+.++++|..+..+.+.+.+..+. ++.|+.+++. .++.
T Consensus 277 -l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~ 353 (390)
T TIGR02718 277 -FI--LGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGE 353 (390)
T ss_pred -HH--HHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHH
Confidence 11 111211111 1111 11 1122334444555778999988888888888887 7778888875 3566
Q ss_pred hhHhhhhcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHH
Q 012908 388 PAGSIFTSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVIL 428 (453)
Q Consensus 388 ~ig~~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l 428 (453)
.+|+.+.+. .+.. .|+..|.+.+++.+++.++
T Consensus 354 ~~g~~~~G~l~~~~---------G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 354 LIASSIAGYLTDRF---------GYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHH---------ccHHHHHHHHHHHHHHHHH
Confidence 666665553 2221 2888898887776666543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.4e-05 Score=80.07 Aligned_cols=144 Identities=15% Similarity=0.181 Sum_probs=99.2
Q ss_pred HHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHHHHH
Q 012908 275 GQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLL 351 (453)
Q Consensus 275 ~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~-~~~~~l~~~~~l 351 (453)
..+.+++|.+..+ ...++..+...++.+..|.++||++||+ .+.+..++..++.+++.. .+...+.+.-++
T Consensus 19 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (379)
T TIGR00881 19 PYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRV------FLPIGLILCAIVNLFFGFSTSLWVMAALWAL 92 (379)
T ss_pred HHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCee------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3556677887654 4888999999999999999999998853 233444445555544433 334467778889
Q ss_pred HHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHH
Q 012908 352 IGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAV 426 (453)
Q Consensus 352 iG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~ 426 (453)
.|++.|..+....++++|++..|+-++..|+.. ++..+++.+... ... ...++..|.+.+.++++..
T Consensus 93 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 164 (379)
T TIGR00881 93 NGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE--------LYSWHWVFIVPGIIAIIVS 164 (379)
T ss_pred HHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh--------cCCchhHHHHHHHHHHHHH
Confidence 999999999999999999999888888777764 445555522221 110 1237888888777766655
Q ss_pred HHHHHH
Q 012908 427 ILSMIL 432 (453)
Q Consensus 427 ~l~l~l 432 (453)
++..++
T Consensus 165 ~~~~~~ 170 (379)
T TIGR00881 165 LICFLL 170 (379)
T ss_pred HHHhee
Confidence 554443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00021 Score=73.23 Aligned_cols=147 Identities=16% Similarity=0.211 Sum_probs=79.1
Q ss_pred HHHhhcHHHHHHHHHHHhhccccceeecc-hHHHHHH-hCCChhhHHHHHHHHhhhhccccccchhhhhhhccCCchhHH
Q 012908 245 TQALIKADFWLIFFSLLLGSGSGLTVIDN-LGQMSQS-LGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVA 322 (453)
Q Consensus 245 ~~~l~s~~FWll~~~~~~~~g~gl~~i~n-~~~i~~a-lg~~~~~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~ 322 (453)
++.++++.+|...+..++.. .+.....+ ...+.++ +|+++.. .+++......|.++.+.+.||+.+|++ .+.+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~~ 276 (394)
T PRK11652 201 RTLLSNRRFNCYLLMLIGTL-AGIAVFEACSGVLMGAVLGLSSMT--VSILFILPIPAAFFGAWFAGRPNKRFS-TLMWQ 276 (394)
T ss_pred HHHHcChHHHHHHHHHHHHH-HHHHHHHHhChHHHHHHcCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 45677788886555443332 22222222 2234444 6766542 333334445555555555666655443 12122
Q ss_pred HHHHHHHHHHHHHHHh---ccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhc
Q 012908 323 MAVAQFVMAIGHIFLG---MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTS 395 (453)
Q Consensus 323 l~~~~~~~~~~~ll~~---~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~ 395 (453)
......+..+..+... ......+..+.++.|++.|..+....+.+.|.+- |+.|+..++.. ++..+|+.+.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~ 355 (394)
T PRK11652 277 SVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSA 355 (394)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222111111111 1122346667889999999999999998889885 78888888764 55556665544
Q ss_pred C
Q 012908 396 M 396 (453)
Q Consensus 396 ~ 396 (453)
.
T Consensus 356 ~ 356 (394)
T PRK11652 356 M 356 (394)
T ss_pred H
Confidence 3
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=5.8e-05 Score=78.03 Aligned_cols=116 Identities=16% Similarity=0.172 Sum_probs=85.1
Q ss_pred cchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHH
Q 012908 272 DNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVG 348 (453)
Q Consensus 272 ~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~-~~~~~l~~~ 348 (453)
.....|.++.|.++.+ ...++..+...+|.+.+|.++||++||+ .+.+..++.+++.++... .+...+++.
T Consensus 39 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~------~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (426)
T PRK12307 39 YIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKP------LMMWSIVAYSVGTGLSGLASGVIMLTLS 112 (426)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH------HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444556678887653 4778899999999999999999997742 334455555555544333 334467888
Q ss_pred HHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhhhhHhhh
Q 012908 349 TLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIF 393 (453)
Q Consensus 349 ~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~ig~~l 393 (453)
-.+.|++.|..+.....+++|.|..|+-++..|+...+..+|+.+
T Consensus 113 r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~ 157 (426)
T PRK12307 113 RFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNII 157 (426)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHH
Confidence 899999999999999999999999888898888865554444433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.1e-05 Score=79.67 Aligned_cols=146 Identities=12% Similarity=0.107 Sum_probs=98.7
Q ss_pred HHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHH
Q 012908 277 MSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIG 353 (453)
Q Consensus 277 i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~-~~~~~l~~~~~liG 353 (453)
+.+++|.+..+ ...+++.++..+|.+..|+++||++||+ .+....++..++.++... .+...+++.-++.|
T Consensus 34 l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 107 (412)
T TIGR02332 34 MGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARR------WIAGIMVLWGIASTATMFATGPESLYLLRILVG 107 (412)
T ss_pred hHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHH------HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34567777654 4888999999999999999999998853 234444444555544433 44557888899999
Q ss_pred hhhhhhcchhHHHHHHhhcccchhhhhhhHhhhhh----hHhhhhcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHH
Q 012908 354 LGYGAHWAIVPAAASELFGLKKFGALYNFLTLANP----AGSIFTSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVIL 428 (453)
Q Consensus 354 ~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~----ig~~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l 428 (453)
++.|+.+.....+++|+|..|+-|+..|+...+.. +|+.+.+. .+.+ ...+..-+|.+|.+.+...++..++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~~~~gwr~~f~~~~~~~l~~~~~ 184 (412)
T TIGR02332 108 IAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALD---GLMALKGWQWLFLLEGFPSVILGVM 184 (412)
T ss_pred HHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCCCccchhHHHHHHHHHHHHHHHH
Confidence 99999998888999999998888888888654433 33333221 1100 0112235999999987776654444
Q ss_pred HHH
Q 012908 429 SMI 431 (453)
Q Consensus 429 ~l~ 431 (453)
..+
T Consensus 185 ~~~ 187 (412)
T TIGR02332 185 TWF 187 (412)
T ss_pred Hhh
Confidence 433
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00024 Score=73.08 Aligned_cols=173 Identities=11% Similarity=0.062 Sum_probs=104.8
Q ss_pred CHHHHhhcHHHHHHHHHHHhhccccceee-cchHHHHHHh----CCChh--hHHHHHHHHhhhhccccccchhhhhhhcc
Q 012908 243 TLTQALIKADFWLIFFSLLLGSGSGLTVI-DNLGQMSQSL----GYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDY 315 (453)
Q Consensus 243 t~~~~l~s~~FWll~~~~~~~~g~gl~~i-~n~~~i~~al----g~~~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~ 315 (453)
+.++.+|++++|.+.+..++.. ...+.. +......++. +.+.. ....++.++.+.++.+..|.+.||+++|+
T Consensus 207 ~~~~~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~ 285 (396)
T TIGR00882 207 LALELFRQRKFWMFVLYVVGVA-CVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKN 285 (396)
T ss_pred HHHHHHcCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 3577889999987765544332 222212 1222333332 22221 23566777888999999999999998752
Q ss_pred CCchhHHHHHHHHHHHHHHHHHh-ccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhh-----Hhhhhhh
Q 012908 316 AYPRPVAMAVAQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNF-----LTLANPA 389 (453)
Q Consensus 316 ~~~r~~~l~~~~~~~~~~~ll~~-~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~-----~~la~~i 389 (453)
- +.+...+.+++..++. ..++..+++...+-|++++......-..+.+.++.|.-++.++. ..++.++
T Consensus 286 ~------l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~ 359 (396)
T TIGR00882 286 A------LLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIF 359 (396)
T ss_pred h------HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHH
Confidence 1 2333444444444433 33444566777788888877766666677888887776654433 2356666
Q ss_pred HhhhhcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 012908 390 GSIFTSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 431 (453)
Q Consensus 390 g~~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~ 431 (453)
++.+.+. .|.. -|+.+|.+.+.+.++..+.+..
T Consensus 360 ~~~l~G~l~~~~---------G~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 360 LSTLAGNMYDSI---------GFQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred HHHhHHHHHHhc---------ccHHHHHHHHHHHHHHHHHHHH
Confidence 6665554 2221 2999999998888777666543
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.4e-05 Score=77.57 Aligned_cols=160 Identities=13% Similarity=0.169 Sum_probs=108.6
Q ss_pred HHhhccccceeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHH
Q 012908 260 LLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFL 337 (453)
Q Consensus 260 ~~~~~g~gl~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~ 337 (453)
.+.+....-++..-+.++.+++|.++.+ ...+++.+...++.+..|+++||++||+ .+....++..++.+++
T Consensus 12 ~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~------~l~~~~~~~~i~~~~~ 85 (392)
T PRK10473 12 VLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKP------VAIPGAALFIIASLLC 85 (392)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChH------HHHHHHHHHHHHHHHH
Confidence 3333333345556678888899988654 3778888999999999999999997742 2233444445554443
Q ss_pred hc-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcCcCCCCCCcccCCcccH
Q 012908 338 GM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSMPRVDEPLKCEGSICYF 412 (453)
Q Consensus 338 ~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~~~~~~~~~C~G~~Cy~ 412 (453)
.. .+...+++.-.+.|++.|..+.....+++|.+..|+-++..|+.. ++..+|+.+.+.... ...|+
T Consensus 86 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~--------~~g~~ 157 (392)
T PRK10473 86 SLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML--------KFPWQ 157 (392)
T ss_pred HHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CcChH
Confidence 33 333456677889999999999999999999999888877766653 444445544332110 12389
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012908 413 LTSMIMSGLCIVAVILSMILV 433 (453)
Q Consensus 413 ~~f~i~~~~~~~~~~l~l~l~ 433 (453)
..|.+.+.++++..++.....
T Consensus 158 ~~~~~~~~~~~i~~~~~~~~~ 178 (392)
T PRK10473 158 SLFYTMAAMGILVLLLSLFIL 178 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 999998887777766654443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=98.01 E-value=6.5e-05 Score=76.23 Aligned_cols=139 Identities=18% Similarity=0.208 Sum_probs=95.0
Q ss_pred chHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHHH
Q 012908 273 NLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGT 349 (453)
Q Consensus 273 n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~-~~~~~l~~~~ 349 (453)
...++.+++|.++.+ ...++..+...++.+..|.++||++||+ .+....++.+++.++... .+...+++.-
T Consensus 34 ~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (405)
T TIGR00891 34 VLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRL------PMVTSIVLFSAGTLACGFAPGYITMFIAR 107 (405)
T ss_pred HHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHH------HHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 345566678887654 4888999999999999999999998753 223334444444444333 3445677889
Q ss_pred HHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhhhhH----hhhhcC-cCCCCCCcccCCcccHHHHHHHHHHHHH
Q 012908 350 LLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAG----SIFTSM-PRVDEPLKCEGSICYFLTSMIMSGLCIV 424 (453)
Q Consensus 350 ~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~ig----~~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~ 424 (453)
++.|++.|..+....+.+.|.+..++-++..|+...+..+| +.+.+. .+.. | ..+|..|.+.+...++
T Consensus 108 ~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~------~-~~w~~~f~~~~~~~~~ 180 (405)
T TIGR00891 108 LVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW------G-DGWRALFFISILPIIF 180 (405)
T ss_pred HHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------C-ccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888876444444 333222 1110 1 1378888765544433
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.4e-05 Score=78.48 Aligned_cols=166 Identities=16% Similarity=0.130 Sum_probs=99.3
Q ss_pred cHHHHHHHHHHHhhccccceeecchHHHHH-HhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHH
Q 012908 250 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVA 326 (453)
Q Consensus 250 s~~FWll~~~~~~~~g~gl~~i~n~~~i~~-alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~ 326 (453)
|++||.+....++..+.--.+..-+....+ ++|++..+ ..+++.++...++++.+|+++||++||+..-. . ...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~--~-~~~ 77 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLW--I-ISG 77 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH--H-HHH
Confidence 588999977776665543344444444444 57887654 48999999999999999999999988643211 1 111
Q ss_pred HHHHHHHHHHHhccC------chhHHHHHHHHHhhhhhhcchhHHHHHHhhcccc----hhhhhhhHhhhhhhHhhhhcC
Q 012908 327 QFVMAIGHIFLGMGW------PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKK----FGALYNFLTLANPAGSIFTSM 396 (453)
Q Consensus 327 ~~~~~~~~ll~~~~~------~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~----fg~~yg~~~la~~ig~~l~~~ 396 (453)
..+.....+.+...+ ...+.+..++.|++++...+.....+.|. .|+ +|.......+|..+|+.+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~~g~~~~g~ 155 (396)
T TIGR00882 78 LLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKV--SRNSNFEYGKARMFGCVGWALCASIAGI 155 (396)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHh--hhhcccccchhhhhcccHHHHHHHHHhh
Confidence 111111111111111 11234456777888888888887777664 233 344334445666666666443
Q ss_pred cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHH
Q 012908 397 PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILS 429 (453)
Q Consensus 397 ~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~ 429 (453)
... --++..|.+.+.+.++..++.
T Consensus 156 l~~---------~~~~~~f~~~~~~~~~~~~~~ 179 (396)
T TIGR00882 156 LFS---------IDPQIVFWLGSGFALILMLLL 179 (396)
T ss_pred hhc---------cCchHHHHHHHHHHHHHHHHH
Confidence 111 127788988887777766544
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.1e-05 Score=80.32 Aligned_cols=170 Identities=14% Similarity=0.158 Sum_probs=94.5
Q ss_pred HHhhcHHHHHHHHHHHhhccccceeecchHHHHHH-hCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHH
Q 012908 246 QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVA 322 (453)
Q Consensus 246 ~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~a-lg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~ 322 (453)
+..++++||.+++.+++...+--.+..-+....++ +|++..+ ..+++..+...++++.+|.++||+++|+.. .
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~----~ 80 (420)
T PRK09528 5 YYLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHL----L 80 (420)
T ss_pred hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH----H
Confidence 45678999999888877765433344444444454 7888654 489999999999999999999999875322 2
Q ss_pred HHHHHHHHHHHHHHH-hccC----ch--hHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhh----HhhhhhhHh
Q 012908 323 MAVAQFVMAIGHIFL-GMGW----PG--AMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNF----LTLANPAGS 391 (453)
Q Consensus 323 l~~~~~~~~~~~ll~-~~~~----~~--~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~----~~la~~ig~ 391 (453)
..........+.+.. .... .. ...++.++.|.+++...+.....+.+ +. ++.|..||. ..++..+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~g~~~g~~~~~~~~g~~i~~ 158 (420)
T PRK09528 81 WIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-VS-RRSGFEYGRARMWGSLGWALCA 158 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-HH-hhccccchhhHHhhhHHHHHHH
Confidence 111111111111111 0000 00 12223344455555544555555433 32 444555554 345566666
Q ss_pred hhhcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 012908 392 IFTSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 431 (453)
Q Consensus 392 ~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~ 431 (453)
.+.+. .+. -++..|++.+.+++++.++.+.
T Consensus 159 ~~~g~l~~~----------~~~~~f~~~~~~~~~~~~~~~~ 189 (420)
T PRK09528 159 FIAGILFNI----------NPQINFWLGSGSALILLVLLFF 189 (420)
T ss_pred HHHHHHHhc----------CchHhHHHHHHHHHHHHHHHhc
Confidence 55443 111 1567888877777665554433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.8e-05 Score=79.84 Aligned_cols=148 Identities=13% Similarity=0.200 Sum_probs=104.7
Q ss_pred cchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHH
Q 012908 272 DNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVG 348 (453)
Q Consensus 272 ~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~-~~~~~l~~~ 348 (453)
.....+.+++|.+..+ ...+...+.+.++.+..|.++||++||+ .+.+..++..++.++... .+...+.+.
T Consensus 23 ~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (485)
T TIGR00711 23 VAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRR------LFLISTFAFTLGSLLCGVAPNLELMIIF 96 (485)
T ss_pred HHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHH------HHHHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 3456677788887543 4888999999999999999999998752 234445555555555443 334567788
Q ss_pred HHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhh----hhhhHhhhhcCcCCCCCCcccCCcccHHHHHHHHHHHHH
Q 012908 349 TLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTL----ANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIV 424 (453)
Q Consensus 349 ~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~l----a~~ig~~l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~ 424 (453)
-++.|++.|........+++|.+..++-|+..|+... +..+|+.+.+... ....+|..|.+...++++
T Consensus 97 ~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~--------~~~~w~~~f~~~~~~~~~ 168 (485)
T TIGR00711 97 RVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII--------ENYHWRWIFLINVPIGII 168 (485)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc--------cCcCceehhhhhhHHHHH
Confidence 9999999999999999999999998888888887643 4444444333211 112478888888877777
Q ss_pred HHHHHHHHH
Q 012908 425 AVILSMILV 433 (453)
Q Consensus 425 ~~~l~l~l~ 433 (453)
+.++..++.
T Consensus 169 ~~~~~~~~~ 177 (485)
T TIGR00711 169 VVVVAFFIL 177 (485)
T ss_pred HHHHHHHHc
Confidence 666555443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.1e-05 Score=79.59 Aligned_cols=141 Identities=15% Similarity=0.106 Sum_probs=91.7
Q ss_pred cHHHHHHHHHHHhhccccceeec----chHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHH
Q 012908 250 KADFWLIFFSLLLGSGSGLTVID----NLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 323 (453)
Q Consensus 250 s~~FWll~~~~~~~~g~gl~~i~----n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l 323 (453)
.+.+|..+..++++.....+.=+ -..++.+++|.++.+ ...+.+.+...++.+..|+++||+++|+-.....+
T Consensus 24 ~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~- 102 (467)
T PRK09556 24 FKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLI- 102 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHH-
Confidence 34477666666665543322112 244567788887654 47888999999999999999999988643311111
Q ss_pred HHHHHHHHHHHHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhhhhHh
Q 012908 324 AVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGS 391 (453)
Q Consensus 324 ~~~~~~~~~~~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~ig~ 391 (453)
..+.....++.++... .+...+.+.-++.|++.|..+.....+++|+|..|+.|+..|+...+..+|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~ 171 (467)
T PRK09556 103 LSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGG 171 (467)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhh
Confidence 1111112222221111 2334577778889999999999999999999999999999888754444443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00017 Score=74.47 Aligned_cols=159 Identities=14% Similarity=0.219 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHhhcccccee--ec-chHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHH
Q 012908 251 ADFWLIFFSLLLGSGSGLTV--ID-NLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAV 325 (453)
Q Consensus 251 ~~FWll~~~~~~~~g~gl~~--i~-n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~ 325 (453)
+.-|++..+++.+.-..+++ ++ -..+|.+++|.+..+ ..+++..+...++.+..|.++||++||+ .+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~------~l~~ 79 (393)
T PRK09705 6 PLNFMLLVLVLIGLNMRPLLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERR------SVAI 79 (393)
T ss_pred chHHHHHHHHHHHHHcchhhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchH------HHHH
Confidence 34577777777766655443 22 233455667877654 4888889999999999999999998852 3455
Q ss_pred HHHHHHHHHHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcC-cCC
Q 012908 326 AQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSM-PRV 399 (453)
Q Consensus 326 ~~~~~~~~~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~-~~~ 399 (453)
..++.+++.++... ++...+.++-++.|++.|......+.++.|.|. ++-+.-.|... +++.+|+.+... .+.
T Consensus 80 ~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~ 158 (393)
T PRK09705 80 SLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQH 158 (393)
T ss_pred HHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666665543 344568889999999999999999999999996 77788877754 344444444332 111
Q ss_pred CCCCcccCCcccHHHHHHHHHHHHH
Q 012908 400 DEPLKCEGSICYFLTSMIMSGLCIV 424 (453)
Q Consensus 400 ~~~~~C~G~~Cy~~~f~i~~~~~~~ 424 (453)
..-+|..+.+.+...++
T Consensus 159 --------~~~w~~~~~~~~~~~~~ 175 (393)
T PRK09705 159 --------SETWYQTLAWWALPAVV 175 (393)
T ss_pred --------cCCHHHHHHHHHHHHHH
Confidence 01267777665554443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.5e-05 Score=78.99 Aligned_cols=173 Identities=10% Similarity=-0.024 Sum_probs=104.3
Q ss_pred HHhhcHHHHHHHHHHHhhccccceeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHH
Q 012908 246 QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 323 (453)
Q Consensus 246 ~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l 323 (453)
...++++|+.+++..++.....-+...-+..+.++++.++.+ ...+...+...++.+..|.++||++||+-......+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~ 91 (417)
T PRK10489 12 LLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGT 91 (417)
T ss_pred HHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHH
Confidence 344688888887775554333233333344555677766543 478889999999999999999999886543211111
Q ss_pred HHHHHHHHHHHHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcC-c
Q 012908 324 AVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSM-P 397 (453)
Q Consensus 324 ~~~~~~~~~~~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~-~ 397 (453)
. ......++...+.. .+...+++..++.|+++|.........+.|.+..++.++..++.. ++..+|+.+.+. .
T Consensus 92 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~ 170 (417)
T PRK10489 92 C-GLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI 170 (417)
T ss_pred H-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence 1 11111111111111 222356667888899999888888888999998777777666643 444455544332 1
Q ss_pred CCCCCCcccCCcccHHHHHHHHHHHHHHHHH
Q 012908 398 RVDEPLKCEGSICYFLTSMIMSGLCIVAVIL 428 (453)
Q Consensus 398 ~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l 428 (453)
+. ..++..|.+...+++++.++
T Consensus 171 ~~---------~~~~~~~~~~~~~~~~~~~~ 192 (417)
T PRK10489 171 AA---------GGVAWNYGLAAAGTFITLLP 192 (417)
T ss_pred HH---------HhhHHHHHHHHHHHHHHHHH
Confidence 11 13778887776665554443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.6e-05 Score=80.89 Aligned_cols=158 Identities=18% Similarity=0.256 Sum_probs=97.4
Q ss_pred cHHHHHHHHHHHhhccccceeecchH-HHHHHhCCChhh--HHHHHHHHhhhhccccccchhhh-hhhccCCchhHHHHH
Q 012908 250 KADFWLIFFSLLLGSGSGLTVIDNLG-QMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEI-IVRDYAYPRPVAMAV 325 (453)
Q Consensus 250 s~~FWll~~~~~~~~g~gl~~i~n~~-~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~-l~~~~~~~r~~~l~~ 325 (453)
-+.+|.++...++...+--++...+. .+.+++|.++.+ ..++.+.....+.-+.+|+++|| ++||+ .+.+
T Consensus 13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~------~~~~ 86 (489)
T PRK10207 13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKR------TIVL 86 (489)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHH------HHHH
Confidence 34567766666554333322222333 334568877654 36677777888888899999998 88853 2345
Q ss_pred HHHHHHHHHHHHhccC--chhHHHHHHHHHhhhhhhcchhHHHHHHhhcccc--hhhhhhhH----hhhhhhHhhhhcCc
Q 012908 326 AQFVMAIGHIFLGMGW--PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKK--FGALYNFL----TLANPAGSIFTSMP 397 (453)
Q Consensus 326 ~~~~~~~~~ll~~~~~--~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~--fg~~yg~~----~la~~ig~~l~~~~ 397 (453)
..+++.++++++.... +..++++-++.|++.|...+..+++++|.|..++ .+.-|++. .+|+.+|+.+.+..
T Consensus 87 g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l 166 (489)
T PRK10207 87 GAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVI 166 (489)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 5666666665544322 3346678889999999999999999999997553 23334443 34444443333321
Q ss_pred CCCCCCcccCCcccHHHHHHHHHH
Q 012908 398 RVDEPLKCEGSICYFLTSMIMSGL 421 (453)
Q Consensus 398 ~~~~~~~C~G~~Cy~~~f~i~~~~ 421 (453)
.. .-.|+..|.+....
T Consensus 167 ~~--------~~gw~~~F~i~~i~ 182 (489)
T PRK10207 167 AD--------KFGYSVTYNLCGAG 182 (489)
T ss_pred HH--------hhChHHHHHHHHHH
Confidence 10 11399999886543
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=97.94 E-value=5.1e-05 Score=76.59 Aligned_cols=145 Identities=14% Similarity=0.112 Sum_probs=96.5
Q ss_pred chHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHh-ccCchhHHHHH
Q 012908 273 NLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGWPGAMYVGT 349 (453)
Q Consensus 273 n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~~l~~~~ 349 (453)
....+.+++|.+... ...++..+...+|.+..|.++||++||+ .+....++..++.+++. ..+...+++..
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (398)
T TIGR00895 39 AAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKR------VLLWSILLFSVFTLLCALATNVTQLLILR 112 (398)
T ss_pred hHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHH------HHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 345566677877543 3677888899999999999999998742 22333444444444433 23344677788
Q ss_pred HHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcCcCCCCCCcccCCcccHHHHHHHHHHHHHH
Q 012908 350 LLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVA 425 (453)
Q Consensus 350 ~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~ 425 (453)
++.|++.|..+....++++|.+..++-++..|+.. ++..+|+.+.+.... ..-++..|.+.+.++++.
T Consensus 113 ~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--------~~g~~~~~~~~~~~~~~~ 184 (398)
T TIGR00895 113 FLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP--------VFGWRSLFYVGGIAPLLL 184 (398)
T ss_pred HHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh--------cccceeehhhhhhHHHHH
Confidence 99999999999999999999999888888887764 444455544432111 012677777776555554
Q ss_pred HHHHHH
Q 012908 426 VILSMI 431 (453)
Q Consensus 426 ~~l~l~ 431 (453)
.++...
T Consensus 185 ~~~~~~ 190 (398)
T TIGR00895 185 LLLLMR 190 (398)
T ss_pred HHHHHH
Confidence 444433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0001 Score=75.70 Aligned_cols=151 Identities=10% Similarity=0.090 Sum_probs=102.4
Q ss_pred ccceeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cCc
Q 012908 266 SGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWP 342 (453)
Q Consensus 266 ~gl~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~-~~~ 342 (453)
+.-++.....++.+++|.++.+ ...++..+...+|.+.+|.++||++||+ .+.....+..++.++... .+.
T Consensus 21 ~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~~~~~~~~~~~~~~~~ 94 (401)
T PRK11043 21 ATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKP------VLLAGLSLFALGSLGMLWVESA 94 (401)
T ss_pred HHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcH------HHHHHHHHHHHHHHHHHHhcCH
Confidence 3334555667788888887654 3888999999999999999999998853 223334444444444333 333
Q ss_pred hhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH----hhhhhhHhhhhcC-cCCCCCCcccCCcccHHHHHH
Q 012908 343 GAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL----TLANPAGSIFTSM-PRVDEPLKCEGSICYFLTSMI 417 (453)
Q Consensus 343 ~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~----~la~~ig~~l~~~-~~~~~~~~C~G~~Cy~~~f~i 417 (453)
..+.+.-.+.|++.|........+++|.|..++-+..++.. .++..+|+.+.+. .+. .-++..|.+
T Consensus 95 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~---------~g~~~~~~~ 165 (401)
T PRK11043 95 AQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH---------FGWQAIFAT 165 (401)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CChHHHHHH
Confidence 45667778889998888888889999999977776666654 3444455544432 111 128889988
Q ss_pred HHHHHHHHHHHHHH
Q 012908 418 MSGLCIVAVILSMI 431 (453)
Q Consensus 418 ~~~~~~~~~~l~l~ 431 (453)
...+.++..++...
T Consensus 166 ~~~~~~~~~~~~~~ 179 (401)
T PRK11043 166 LFAITLLLILPTLR 179 (401)
T ss_pred HHHHHHHHHHHHHH
Confidence 88777766555443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=97.93 E-value=9.3e-05 Score=79.02 Aligned_cols=180 Identities=16% Similarity=0.238 Sum_probs=125.7
Q ss_pred CHHHHhhcHHHHHHHHHHHhhccccceeecchHHHHH--HhCCChhhH--HHHHHHHhhhhccccccchhhhhhhccCCc
Q 012908 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ--SLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYP 318 (453)
Q Consensus 243 t~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~--alg~~~~~~--~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~ 318 (453)
|+++.-|.++.+...++.++-. -|+..+..++.+.. .+|+++.+. +.-+..+....|-+++|++.||++.|.+
T Consensus 273 t~k~~~~~~~~~~fLia~~l~~-dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~-- 349 (477)
T PF11700_consen 273 TFKEIRKLRQLFLFLIAYFLYS-DGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK-- 349 (477)
T ss_pred HHHHHHhChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh--
Confidence 5677777788887666666544 45555555555554 478887654 5557888999999999999999987532
Q ss_pred hhHHHHH--HHHHHHHHHHHH-----hccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhh
Q 012908 319 RPVAMAV--AQFVMAIGHIFL-----GMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LAN 387 (453)
Q Consensus 319 r~~~l~~--~~~~~~~~~ll~-----~~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~ 387 (453)
|.+...+ ..++...+++-+ ...++..+|+..+++|+..|+..+..=++.+|+=-..+-++-||+.. .+.
T Consensus 350 ~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss 429 (477)
T PF11700_consen 350 RTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASS 429 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Confidence 2222221 112222222201 13334579999999999999999999999999988888888888864 667
Q ss_pred hhHhhhhcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 012908 388 PAGSIFTSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 433 (453)
Q Consensus 388 ~ig~~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~ 433 (453)
.+||.+++. .+. ++..|.++.....+.++|.++-..+.
T Consensus 430 ~lGPll~g~i~~~--------tg~~r~g~~~l~~lf~~gl~ll~~v~ 468 (477)
T PF11700_consen 430 WLGPLLFGLITDA--------TGSQRYGFLFLLVLFLIGLILLFFVD 468 (477)
T ss_pred HHHHHHHHHHHHH--------hCCchhHHHHHHHHHHHHHHHHhhcc
Confidence 889998886 222 23589999999988888877764443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00015 Score=79.04 Aligned_cols=171 Identities=15% Similarity=0.134 Sum_probs=118.0
Q ss_pred hcHHHHHHHHHHHhhccccce---e-ecchHHHHHHhCCChhh-HHHHHHHHhhhhccccccchhhhhhhccCCchhHHH
Q 012908 249 IKADFWLIFFSLLLGSGSGLT---V-IDNLGQMSQSLGYDNTH-IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 323 (453)
Q Consensus 249 ~s~~FWll~~~~~~~~g~gl~---~-i~n~~~i~~alg~~~~~-~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l 323 (453)
++++|+..+..+.+..-+... . -+-+.+|.+++|.++.. .++...++.++++-...|-+||.++|| |++
T Consensus 38 ~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr------~~~ 111 (599)
T PF06609_consen 38 RSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRR------YFF 111 (599)
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcch------HHH
Confidence 678888887766665433321 1 12357888999887654 477778899999999999999999885 566
Q ss_pred HHHHHHHHHHHHHHhccC-chhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhhh----hHhhhhcCcC
Q 012908 324 AVAQFVMAIGHIFLGMGW-PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANP----AGSIFTSMPR 398 (453)
Q Consensus 324 ~~~~~~~~~~~ll~~~~~-~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~----ig~~l~~~~~ 398 (453)
....++.++|..+-+... -..+..+.++.|+++|.... ....++|+--.|+-+.-+++...... +|+.+-....
T Consensus 112 i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~ 190 (599)
T PF06609_consen 112 IIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA 190 (599)
T ss_pred HHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc
Confidence 778888889988766544 34677899999999999874 56668999988876554444332221 2333322111
Q ss_pred CCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 012908 399 VDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVH 434 (453)
Q Consensus 399 ~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~ 434 (453)
. ..-+|+.|++.+..+.+++++..++.+
T Consensus 191 ~--------~~~WRw~~~~~~i~~~i~~vl~~~fY~ 218 (599)
T PF06609_consen 191 A--------HSGWRWIFYIFIIWSGIALVLIFFFYF 218 (599)
T ss_pred c--------CCCcchHHHHHHHHHHHHHHHHHHHhC
Confidence 1 134899999998888888776655443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.2e-05 Score=81.18 Aligned_cols=170 Identities=12% Similarity=0.103 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHhhccccceeecch--HHHHHHhCCChhhH-HHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHH
Q 012908 251 ADFWLIFFSLLLGSGSGLTVIDNL--GQMSQSLGYDNTHI-FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 327 (453)
Q Consensus 251 ~~FWll~~~~~~~~g~gl~~i~n~--~~i~~alg~~~~~~-~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~ 327 (453)
.++|.+...+++...+|.++..++ .++.+++|++..+. .++-.+..-..+.+.+|+++||+++| ..+.+..
T Consensus 25 ~Rw~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R------~vllig~ 98 (591)
T PTZ00207 25 RRFALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPR------PIFVLSM 98 (591)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH------HHHHHHH
Confidence 345566666666666777766555 56777889886543 22212223334556789999999663 3456666
Q ss_pred HHHHHHHHHHhcc-------CchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhhhhHhhhhcCcCCC
Q 012908 328 FVMAIGHIFLGMG-------WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSMPRVD 400 (453)
Q Consensus 328 ~~~~~~~ll~~~~-------~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~ig~~l~~~~~~~ 400 (453)
++..+|.++.... +...+++.-++.|++-|..+.....++.++|- ++-|.-.|+...+..+|+.+++..-..
T Consensus 99 ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~ 177 (591)
T PTZ00207 99 TVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLA 177 (591)
T ss_pred HHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777665432 23356777888999988888888899999995 778999999877777777654430000
Q ss_pred CCCcccCCcccHHHHHHHHHHHHHHHHHHHHH
Q 012908 401 EPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 432 (453)
Q Consensus 401 ~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l 432 (453)
-.. .-++..|++.+.+.++..++.+.+
T Consensus 178 ---l~~--~~~~~~fl~l~vl~~vv~ll~~~~ 204 (591)
T PTZ00207 178 ---FFS--DNTSAYFFFLMSFALVVGILAIVF 204 (591)
T ss_pred ---HHH--HhHHHHHHHHHHHHHHHHHHHHhh
Confidence 000 115667777766666555544443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00034 Score=74.48 Aligned_cols=183 Identities=14% Similarity=0.158 Sum_probs=115.9
Q ss_pred CCCCHHHHhhcHHHHHHHHHHHhhccccceeecchHHHHH-HhCCChh--hHHHHHHHHhhhhccccccchhhhhhhccC
Q 012908 240 EDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYA 316 (453)
Q Consensus 240 ~~~t~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~-alg~~~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~ 316 (453)
.+..++++++++.+|.+|+.-++..-.-.+++...-.-.+ -+|++-. ..+.++=-+..++-++++|.++|++.+| .
T Consensus 247 ~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ 325 (466)
T KOG2532|consen 247 PPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR-I 325 (466)
T ss_pred CCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-c
Confidence 4678999999999999999998875444443333333333 3777743 3477788888999999999999999775 4
Q ss_pred Cc----hhHHHHHHHHHHHHHHHHHhccC--ch-----hHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH--
Q 012908 317 YP----RPVAMAVAQFVMAIGHIFLGMGW--PG-----AMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL-- 383 (453)
Q Consensus 317 ~~----r~~~l~~~~~~~~~~~ll~~~~~--~~-----~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~-- 383 (453)
.+ |-.+-.+++...++.++.+...+ .. .+.++..+.|++.++..-... .-.++|-+...|+.
T Consensus 326 ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~-----~~apq~a~~l~g~~~~ 400 (466)
T KOG2532|consen 326 LSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQ-----DIAPQHAGFVMGIINF 400 (466)
T ss_pred CchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhh-----hccchHHHHHHHHHHH
Confidence 32 33444556666655555444333 11 122234444444444332221 11567777777775
Q ss_pred --hhhhhhHhhhhcCcCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 012908 384 --TLANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 433 (453)
Q Consensus 384 --~la~~ig~~l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~ 433 (453)
.++..++|++.+..-+++ -.+-.+..|++.+++++++.+.-.++-
T Consensus 401 ~~~~~~~~~P~~vg~~~~~~-----t~~eW~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 401 VGALAGFIAPLLVGIIVTDN-----TREEWRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HHHHHHHHHHHheeeEeCCC-----CHHHHHHHHHHHHHHHHHhchheeEee
Confidence 466777887777522211 134599999999999988885544443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=7.4e-05 Score=77.45 Aligned_cols=165 Identities=14% Similarity=0.157 Sum_probs=105.2
Q ss_pred cHHHHHHHHHHHhhccccceeecchHH-HHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHH
Q 012908 250 KADFWLIFFSLLLGSGSGLTVIDNLGQ-MSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVA 326 (453)
Q Consensus 250 s~~FWll~~~~~~~~g~gl~~i~n~~~-i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~ 326 (453)
-++ |.++...++...+.-++..=+.. +.+++|.+... ...++..+...+.++.+|.++||++||+ .+...
T Consensus 10 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~------~l~~~ 82 (400)
T PRK11646 10 LGK-YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKP------MIVTG 82 (400)
T ss_pred ccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchH------HHHHH
Confidence 344 44444444443333333333332 34567887654 3677778888888999999999997742 23444
Q ss_pred HHHHHHHHHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH----hhhhhhHhhhhcCcCCCC
Q 012908 327 QFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL----TLANPAGSIFTSMPRVDE 401 (453)
Q Consensus 327 ~~~~~~~~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~----~la~~ig~~l~~~~~~~~ 401 (453)
..+..++.+++.. .+...+++..++.|++.|.......+++.|.+..++.++.+|+. .++..+|+.+.+.-..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~-- 160 (400)
T PRK11646 83 MLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ-- 160 (400)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 4444555544433 34446777888899999888888889999999988999988885 3445555544332111
Q ss_pred CCcccCCcccHHHHHHHHHHHHHHHHHHH
Q 012908 402 PLKCEGSICYFLTSMIMSGLCIVAVILSM 430 (453)
Q Consensus 402 ~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l 430 (453)
.-++..|.+.+..++++.++..
T Consensus 161 -------~g~~~~f~~~~~~~~~~~i~~~ 182 (400)
T PRK11646 161 -------YDFRLVCATGAVLFVLAAAFNA 182 (400)
T ss_pred -------hhHHHHHHHHHHHHHHHHHHHH
Confidence 1278889888777666554443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0002 Score=75.26 Aligned_cols=160 Identities=17% Similarity=0.149 Sum_probs=99.6
Q ss_pred hhccccceeecchHH-HHHHh--------CCChh--hHHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHH
Q 012908 262 LGSGSGLTVIDNLGQ-MSQSL--------GYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVM 330 (453)
Q Consensus 262 ~~~g~gl~~i~n~~~-i~~al--------g~~~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~ 330 (453)
+..|-...+++..-+ +.+.. +.++. ...++...++..+|-+++|.++||++||+. +.+...++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~------~~~~~~l~ 95 (479)
T PRK10077 22 LLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS------LKIAAVLF 95 (479)
T ss_pred HhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH------HHHHHHHH
Confidence 334445555555433 43433 44433 248899999999999999999999988632 23333444
Q ss_pred HHHHHHHhc----------cC---chhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhhhhHhhhhc--
Q 012908 331 AIGHIFLGM----------GW---PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTS-- 395 (453)
Q Consensus 331 ~~~~ll~~~----------~~---~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~ig~~l~~-- 395 (453)
.++.++.+. .+ ...+.+.-++.|++.|+.+...+++++|++..|+-|+..|+...+..+|..+..
T Consensus 96 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~ 175 (479)
T PRK10077 96 FISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFV 175 (479)
T ss_pred HHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444333221 11 124567789999999999999999999999999899888886554444443211
Q ss_pred -C--cCCCCCCcccCCcccHHHHHHHHHHHHHHHHH
Q 012908 396 -M--PRVDEPLKCEGSICYFLTSMIMSGLCIVAVIL 428 (453)
Q Consensus 396 -~--~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l 428 (453)
. ....+.... +..-+|..|.+.+...++..++
T Consensus 176 ~~~~~~~~~~~~~-~~~gWr~~f~~~~~~~~~~~~~ 210 (479)
T PRK10077 176 NYFIARSGDASWL-NTDGWRYMFASEAIPALLFLML 210 (479)
T ss_pred HHHHhccCccccc-ccCChHHHHHHHHHHHHHHHHH
Confidence 0 000000001 1235899998877666665443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00012 Score=78.10 Aligned_cols=147 Identities=11% Similarity=0.051 Sum_probs=100.9
Q ss_pred chHHHHHHhCCChh--hHHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHHH
Q 012908 273 NLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGT 349 (453)
Q Consensus 273 n~~~i~~alg~~~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~-~~~~~l~~~~ 349 (453)
.+.+|.+++|.+.. ...++.+.+..+.+.+.+|.++||++||+ .+....++..++.++... .+...+.++-
T Consensus 28 a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~------~l~~~~~~~~~~~~~~~~a~~~~~li~~r 101 (495)
T PRK14995 28 AAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKR------LLMLGGTLFGLASLAAAFSPTASWLIATR 101 (495)
T ss_pred HHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH------HHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35678888887654 34788899999999999999999998853 334445555555555443 4455677788
Q ss_pred HHHHhhhhhhcchhHHHHHHhh-cccchhhhhhhHh----hhhhhHhhhhcCcCCCCCCcccCCcccHHHHHHHHHHHHH
Q 012908 350 LLIGLGYGAHWAIVPAAASELF-GLKKFGALYNFLT----LANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIV 424 (453)
Q Consensus 350 ~liG~~yG~~~~~~p~i~s~~F-G~k~fg~~yg~~~----la~~ig~~l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~ 424 (453)
++.|++.|......-.++.+.| ..|+-++-.|+.. ++..+||.+.+.-.. ...+|..|++...++++
T Consensus 102 ~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~--------~~gwr~~f~i~~~~~~~ 173 (495)
T PRK14995 102 ALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE--------HFYWGSVFLINVPIVLV 173 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------cCChHHHHHHHHHHHHH
Confidence 9999999988777667777777 5677777777753 445555554443111 11389999998877777
Q ss_pred HHHHHHHHH
Q 012908 425 AVILSMILV 433 (453)
Q Consensus 425 ~~~l~l~l~ 433 (453)
+.++..+..
T Consensus 174 ~~~l~~~~l 182 (495)
T PRK14995 174 VMGLTARYV 182 (495)
T ss_pred HHHHHHHhC
Confidence 666555443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0005 Score=71.74 Aligned_cols=135 Identities=20% Similarity=0.318 Sum_probs=93.9
Q ss_pred CHHHHhhcHHHHHHHHHHHhhccccceeecchHHHHHH-hCCCh-hhHHHHHHHHhhhhccccccchhhhhhhccCCchh
Q 012908 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDN-THIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (453)
Q Consensus 243 t~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~a-lg~~~-~~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~ 320 (453)
.+++..++++|+.++.+.++......+.....-...+. +|.++ ...+..+..+.+.++-.+++.++||++||+.+
T Consensus 217 ~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~--- 293 (428)
T PF13347_consen 217 SLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVY--- 293 (428)
T ss_pred chhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeeh---
Confidence 45678889999998888887643333333333344444 45443 23466678888999999999999999886533
Q ss_pred HHHHHHHHHHHHHHHHHh-c--cCchhHHHHHHHHHhhhhhhcchhHHHHHHhh-------cccchhhhhhhH
Q 012908 321 VAMAVAQFVMAIGHIFLG-M--GWPGAMYVGTLLIGLGYGAHWAIVPAAASELF-------GLKKFGALYNFL 383 (453)
Q Consensus 321 ~~l~~~~~~~~~~~ll~~-~--~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~F-------G~k~fg~~yg~~ 383 (453)
....++.+++.+++. . .+...+++..++.|+++|..+.+..++.+|.- |.|.-|..+++.
T Consensus 294 ---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~ 363 (428)
T PF13347_consen 294 ---IIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVN 363 (428)
T ss_pred ---hhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhh
Confidence 333344444443322 2 35667888999999999999999999999876 466778888875
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0002 Score=76.03 Aligned_cols=178 Identities=17% Similarity=0.210 Sum_probs=112.8
Q ss_pred hhcHHHHHHHHHHHhhccccceeecchHHHHH-HhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHH
Q 012908 248 LIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMA 324 (453)
Q Consensus 248 l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~-alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~ 324 (453)
+..+.+|+-++.++++...=.+.-.-..++.+ ++|.++.+ ..+++..+...++|+..|.+.||++.|+ .+.
T Consensus 31 ~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~------v~~ 104 (462)
T PRK15034 31 IARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRR------WTV 104 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH------HHH
Confidence 34468888888877655444333333344444 57787654 3888999999999999999999998743 223
Q ss_pred HHHHHHHHHHHHHhc------cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhh----hhH
Q 012908 325 VAQFVMAIGHIFLGM------GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LAN----PAG 390 (453)
Q Consensus 325 ~~~~~~~~~~ll~~~------~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~----~ig 390 (453)
+..++..+..++... ++...+++.-++.|++ |+.|......++++|-.|+.|+-.|+.. ++. .++
T Consensus 105 ~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~ 183 (462)
T PRK15034 105 FSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVA 183 (462)
T ss_pred HHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 333333333333332 3445688899999998 9999999999999999888999888873 333 233
Q ss_pred hhhh-----cCcCCCCCCcccC-CcccHHHHHHHHHHHHHHHHHHHHH
Q 012908 391 SIFT-----SMPRVDEPLKCEG-SICYFLTSMIMSGLCIVAVILSMIL 432 (453)
Q Consensus 391 ~~l~-----~~~~~~~~~~C~G-~~Cy~~~f~i~~~~~~~~~~l~l~l 432 (453)
|.+. +.........=.| ..-.+.++.+...+.+++.++..++
T Consensus 184 p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 184 PLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred HHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3322 2110000000011 3346777778777777666665554
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00014 Score=74.95 Aligned_cols=126 Identities=21% Similarity=0.314 Sum_probs=87.3
Q ss_pred HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-c-Cch--hHHHHHHHHHhhhhhhcchh
Q 012908 288 IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-G-WPG--AMYVGTLLIGLGYGAHWAIV 363 (453)
Q Consensus 288 ~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~-~-~~~--~l~~~~~liG~~yG~~~~~~ 363 (453)
...++..+...++.+.+|+++||++||+ .+.+..++..++.++... . ... .+.+.-.+.|++.|..+...
T Consensus 75 ~~~~~~~~~~~i~~~~~g~l~d~~grr~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 148 (481)
T TIGR00879 75 LVVSIFLVGGFIGALFAGWLSDRFGRKK------SLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALV 148 (481)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhhHH------HHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHH
Confidence 4888999999999999999999998742 223334444444444321 2 222 57778999999999999999
Q ss_pred HHHHHHhhcccchhhhhhhHh----hhhhhHhhhh---cCcCCCCCCcccCCcccHHHHHHHHHHHHHHHH
Q 012908 364 PAAASELFGLKKFGALYNFLT----LANPAGSIFT---SMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVI 427 (453)
Q Consensus 364 p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~---~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~ 427 (453)
..+++|.+..|+-++..++.. +|..+|+.+. ... ....-+|..|.+.+...++..+
T Consensus 149 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~--------~~~~~w~~~f~~~~~~~~~~~~ 211 (481)
T TIGR00879 149 PMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSL--------NNTLGWRIPLGLQLIPAGLLFL 211 (481)
T ss_pred HHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcC--------CCCccHHHHHHHHHHHHHHHHH
Confidence 999999999888888877754 4455555544 111 0123589999886555444433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=97.86 E-value=9.7e-05 Score=78.00 Aligned_cols=143 Identities=10% Similarity=0.129 Sum_probs=93.3
Q ss_pred chHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhcc-CchhHHHHH
Q 012908 273 NLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMG-WPGAMYVGT 349 (453)
Q Consensus 273 n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~~-~~~~l~~~~ 349 (453)
...++.+++|.+... ...+++.+...++...+|+++||++||+ .+....++..++.++.... +...+++..
T Consensus 41 ~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~------~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (455)
T TIGR00892 41 FFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRP------VVIAGGLLASLGMILASFSSNVIELYLTA 114 (455)
T ss_pred hHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchH------HHHhhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 456677788887543 3677777888889999999999998853 2233344444444443332 233344443
Q ss_pred -HHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhhhhHhh----hhcC-cCCCCCCcccCCcccHHHHHHHHHHHH
Q 012908 350 -LLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSI----FTSM-PRVDEPLKCEGSICYFLTSMIMSGLCI 423 (453)
Q Consensus 350 -~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~ig~~----l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~ 423 (453)
++.|++.|..+.....++.++|. |+-++..|+...+..+|.. +.+. .+ ...||.+|++.+++++
T Consensus 115 ~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~---------~~gwr~~f~~~~~~~~ 184 (455)
T TIGR00892 115 GFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFE---------SFGWRGSFLILGGLLL 184 (455)
T ss_pred HHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHH---------HhChHHHHHHHHHHHH
Confidence 67799999877777788899996 7778888887654444333 2221 11 1139999999998887
Q ss_pred HHHHHHHH
Q 012908 424 VAVILSMI 431 (453)
Q Consensus 424 ~~~~l~l~ 431 (453)
++.+...+
T Consensus 185 ~~~v~~~~ 192 (455)
T TIGR00892 185 HCCVCGAL 192 (455)
T ss_pred HHHHHHHH
Confidence 76554433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00022 Score=72.99 Aligned_cols=168 Identities=13% Similarity=0.120 Sum_probs=107.5
Q ss_pred cHHHHHHHHHHHhhccccceeecchHHHHHHhCCChh-------hHHHHHHHHhhhhccccccchhhhhhhccCCchhHH
Q 012908 250 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT-------HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVA 322 (453)
Q Consensus 250 s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~-------~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~ 322 (453)
+++++.+|+..++..-..-++..-+..+.+++|.+.. ....++..+...++.+.+|.++||++||+ .
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~------~ 86 (408)
T PRK09874 13 KRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKI------M 86 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHH------H
Confidence 5577777777666543333445556777788887743 23667788889999999999999997742 2
Q ss_pred HHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcC-
Q 012908 323 MAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSM- 396 (453)
Q Consensus 323 l~~~~~~~~~~~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~- 396 (453)
+....++.+++.+++.. .+...+++..++.|++.| ........+.|.+..++-++..|+.. ++..+|+.+.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 165 (408)
T PRK09874 87 LLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLL 165 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344444444444333 334467778888888755 45667778888888777777766653 333444444332
Q ss_pred cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 012908 397 PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 433 (453)
Q Consensus 397 ~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~ 433 (453)
.+. ..++.+|.+.+.+.+++.+...++.
T Consensus 166 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (408)
T PRK09874 166 ADS---------YGLRPVFFITASVLFLCFLVTLFCI 193 (408)
T ss_pred HHH---------hCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 1388899888887777666555443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00018 Score=74.34 Aligned_cols=130 Identities=15% Similarity=0.114 Sum_probs=87.0
Q ss_pred hcHHHHHHHHHHHhhccccceeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHH
Q 012908 249 IKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVA 326 (453)
Q Consensus 249 ~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~ 326 (453)
++...|.....+.+..+.+ +..+-+.++.+++|.++.+ ..++..++...++.+.+|.+.||++||+. +...
T Consensus 12 ~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~------l~~~ 84 (402)
T TIGR00897 12 PLNLLWGYIGVVVFMTGDG-LEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKT------MMIG 84 (402)
T ss_pred CchhhHHHHHHHHHHHhhh-hHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH------HHHH
Confidence 4444454444455555555 3444567777889887654 48899999999999999999999987532 2223
Q ss_pred HHHHHHHHHHH---hc--cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhh
Q 012908 327 QFVMAIGHIFL---GM--GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTL 385 (453)
Q Consensus 327 ~~~~~~~~ll~---~~--~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~l 385 (453)
..+..++.+++ .. .+...+++...+.|++++.........+.+.+..|+-|+..|+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 148 (402)
T TIGR00897 85 LLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWA 148 (402)
T ss_pred HHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33333333221 22 2334566677788999888777777788888888998988888653
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00016 Score=76.34 Aligned_cols=155 Identities=15% Similarity=0.176 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHhhccccceeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHH
Q 012908 251 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQF 328 (453)
Q Consensus 251 ~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~ 328 (453)
+.++.+++..++..-...+...-..++.+++|.+..+ ..++.+.+...+|.+..|.++||++||+ .+....+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~ 93 (496)
T PRK03893 20 KAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRL------AMVISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH------HHHHHHH
Confidence 4566666666554433333444456677788887654 4888899999999999999999998742 2334444
Q ss_pred HHHHHHHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcCcCCCCCC
Q 012908 329 VMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSMPRVDEPL 403 (453)
Q Consensus 329 ~~~~~~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~~~~~~~~ 403 (453)
+.+++.++... .+...+++..++.|++.|..+.....++.|.|..|+-++-.++.. ++..+++.+.+....
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---- 169 (496)
T PRK03893 94 LFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVP---- 169 (496)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 45555544333 334467788999999999999999999999999888777767654 444444444332111
Q ss_pred cccCCcccHHHHHHHH
Q 012908 404 KCEGSICYFLTSMIMS 419 (453)
Q Consensus 404 ~C~G~~Cy~~~f~i~~ 419 (453)
...+|..|.+..
T Consensus 170 ----~~~w~~~f~~~~ 181 (496)
T PRK03893 170 ----VWGWRALFFIGI 181 (496)
T ss_pred ----cCCHHHHHHHHH
Confidence 123888887643
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00018 Score=73.77 Aligned_cols=132 Identities=16% Similarity=0.161 Sum_probs=88.8
Q ss_pred HhhcHHHHHHHHHHHhhccccceeecchH-HHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHH
Q 012908 247 ALIKADFWLIFFSLLLGSGSGLTVIDNLG-QMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 323 (453)
Q Consensus 247 ~l~s~~FWll~~~~~~~~g~gl~~i~n~~-~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l 323 (453)
...+..+|.+++..++..-..-++..-+. ++.+++|.+... ..++...+...++++.+|.++||++||+- +
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~----l-- 84 (392)
T PRK12382 11 SSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRS----A-- 84 (392)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHH----H--
Confidence 45677888887776655443222333333 245678887654 48999999999999999999999988532 1
Q ss_pred HHHHHHHHHH---HHHHhc------cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh
Q 012908 324 AVAQFVMAIG---HIFLGM------GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT 384 (453)
Q Consensus 324 ~~~~~~~~~~---~ll~~~------~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~ 384 (453)
....++..++ ..+... .+...+++.-++.|++.|.......+.+.|.+..|+.++..|+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~ 154 (392)
T PRK12382 85 LQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNG 154 (392)
T ss_pred HHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHH
Confidence 2212222221 111111 122357778889999999988888889999999999999888764
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00017 Score=84.23 Aligned_cols=135 Identities=12% Similarity=0.126 Sum_probs=89.9
Q ss_pred HHhhcHHHHHHHHHHHhhccccceeecchHHHH-HHhCCChh----hHHHHHHHHhhhhccccccchhhhhhhccCCchh
Q 012908 246 QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMS-QSLGYDNT----HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (453)
Q Consensus 246 ~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~-~alg~~~~----~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~ 320 (453)
+.+++.+|+.++++.++..-...++..-+.... ...+.+.. ....+++.+...++.+.+|+++||++||+-+
T Consensus 4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l--- 80 (1146)
T PRK08633 4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVI--- 80 (1146)
T ss_pred chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHH---
Confidence 467899999999888886544433332222222 23444322 2366778888899999999999999886322
Q ss_pred HHHHH-HHHHHHHHH-HHHhccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh
Q 012908 321 VAMAV-AQFVMAIGH-IFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT 384 (453)
Q Consensus 321 ~~l~~-~~~~~~~~~-ll~~~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~ 384 (453)
.... ..++..+.. +.....+...+++.-++.|++.|.......++++|++..++.++..|+..
T Consensus 81 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 145 (1146)
T PRK08633 81 -RIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLE 145 (1146)
T ss_pred -HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHH
Confidence 1111 111111111 11122334567788899999999999999999999999999999888864
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00024 Score=75.53 Aligned_cols=151 Identities=13% Similarity=0.113 Sum_probs=94.0
Q ss_pred hHHHHHHhCCChhhH--HHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHHHH
Q 012908 274 LGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTL 350 (453)
Q Consensus 274 ~~~i~~alg~~~~~~--~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~-~~~~~l~~~~~ 350 (453)
..++.+++|.+..+. ..+...+...+|.+.+|+++||+++|+ .+....++.+++.++... .+...+++.-+
T Consensus 59 ~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~------~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~ 132 (476)
T PLN00028 59 LPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRY------GSAFLLMLTAPAVFCMSLVSSATGFIAVRF 132 (476)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH------HHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 445677888876543 566777888899999999999998752 223333444444443332 33445666778
Q ss_pred HHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcCcCC-CCCCcccCCcccHHHHHHHHHHHHHH
Q 012908 351 LIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSMPRV-DEPLKCEGSICYFLTSMIMSGLCIVA 425 (453)
Q Consensus 351 liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~~~~-~~~~~C~G~~Cy~~~f~i~~~~~~~~ 425 (453)
+.|++.|... .....++|+|-.|+-|.-.|+.. ++..+++.+...... -.+..+.+..-+|.+|++.++++++.
T Consensus 133 l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~ 211 (476)
T PLN00028 133 FIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIM 211 (476)
T ss_pred HHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHH
Confidence 8898888643 34567899998888888877753 455555544322000 00000112224999999988887766
Q ss_pred HHHHHH
Q 012908 426 VILSMI 431 (453)
Q Consensus 426 ~~l~l~ 431 (453)
.++...
T Consensus 212 ~l~~~~ 217 (476)
T PLN00028 212 GILVLT 217 (476)
T ss_pred HHHHHH
Confidence 555543
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00021 Score=73.19 Aligned_cols=142 Identities=18% Similarity=0.137 Sum_probs=100.2
Q ss_pred hcHHHHHHHHHHHhhccccceeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHH
Q 012908 249 IKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVA 326 (453)
Q Consensus 249 ~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~ 326 (453)
.++++|+++...++....-..+..-+.++.+++|.+..+ ...+...+.+.++++..|.++||++||+. +...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~------~~~~ 77 (381)
T PRK03633 4 YTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRS------YYLA 77 (381)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH------HHHH
Confidence 467799999888775444333445667777788887544 48899999999999999999999988532 2333
Q ss_pred HHHHHHHHHHHh-ccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH----hhhhhhHhhhhcC
Q 012908 327 QFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL----TLANPAGSIFTSM 396 (453)
Q Consensus 327 ~~~~~~~~ll~~-~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~----~la~~ig~~l~~~ 396 (453)
.++..++.++.. .++...+.+.-++.|++.|..+......+.+..-.++-|+..|.. .+|..+|+.+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 152 (381)
T PRK03633 78 SLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSK 152 (381)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444333 234446777889999999998888777777777667777777764 4667777776654
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00028 Score=72.63 Aligned_cols=142 Identities=13% Similarity=0.075 Sum_probs=94.3
Q ss_pred hHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHHHH
Q 012908 274 LGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTL 350 (453)
Q Consensus 274 ~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~-~~~~~l~~~~~ 350 (453)
+.++.+++|.++.+ ...+.+.+...++.+..|+++||++||+ . +.........+.+.... .+...+.+.=+
T Consensus 14 lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~-~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~R~ 87 (368)
T TIGR00903 14 LSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRW-F-----LFGSLATFAAAAGRLLDPFNYEWLLACQL 87 (368)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH-H-----HHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 45677788887654 3788889999999999999999998642 1 12222222222222222 34456888889
Q ss_pred HHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhhhhHhhhhcC-----cCCCCCCcccCCcccHHHHHHHHHHHHHH
Q 012908 351 LIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSM-----PRVDEPLKCEGSICYFLTSMIMSGLCIVA 425 (453)
Q Consensus 351 liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~ig~~l~~~-----~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~ 425 (453)
+.|++.|...... ..++|+|..|+-++..++...+..+|..+-.. .+. .-+|..|++.+.++++.
T Consensus 88 l~G~g~~~~~~~~-~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~---------~gWr~~f~~~~~l~~~~ 157 (368)
T TIGR00903 88 LAALGQPFLLNAF-APAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA---------GGLQLLIIPIAAVAAAG 157 (368)
T ss_pred HHHhHhHHHHHHH-HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------cchHHHHHHHHHHHHHH
Confidence 9999999755444 44588898899999999887665555544322 111 23999999988877776
Q ss_pred HHHHHH
Q 012908 426 VILSMI 431 (453)
Q Consensus 426 ~~l~l~ 431 (453)
.++..+
T Consensus 158 ~~~~~~ 163 (368)
T TIGR00903 158 IILVLA 163 (368)
T ss_pred HHHHHH
Confidence 555443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00068 Score=70.33 Aligned_cols=166 Identities=14% Similarity=0.191 Sum_probs=130.9
Q ss_pred cHHHHHHHHHHHhhccccceeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHH
Q 012908 250 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 327 (453)
Q Consensus 250 s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~ 327 (453)
....|.+-+..|+......+...=+.+|++++|.+..+ ..+++++..-.+|-+....+.||+.|| ..+....
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr------~lLl~~l 85 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERR------RLLLGLL 85 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchH------HHHHHHH
Confidence 44567777777787888888999999999999998765 499999999999999999999998664 3455667
Q ss_pred HHHHHHHHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhh--------hhhhHhhhhcCcC
Q 012908 328 FVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTL--------ANPAGSIFTSMPR 398 (453)
Q Consensus 328 ~~~~~~~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~l--------a~~ig~~l~~~~~ 398 (453)
.++.++.++.+. ++-..+.++=++.|++-|..|++.-.+.+|+=..++-++-=++++. |.|+|.++-...
T Consensus 86 ~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~- 164 (394)
T COG2814 86 ALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF- 164 (394)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh-
Confidence 777778877554 4445788899999999999999999999999999999988888753 344554442211
Q ss_pred CCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 012908 399 VDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 433 (453)
Q Consensus 399 ~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~ 433 (453)
-+|.+|.+.+++++++.+......
T Consensus 165 -----------GWR~~F~~ia~l~ll~~~~~~~~l 188 (394)
T COG2814 165 -----------GWRATFLAIAVLALLALLLLWKLL 188 (394)
T ss_pred -----------hHHHHHHHHHHHHHHHHHHHHHhC
Confidence 389999999988887666554433
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00028 Score=74.00 Aligned_cols=134 Identities=10% Similarity=0.028 Sum_probs=78.3
Q ss_pred CHHHHhhcHHHHHHHHHHHhhccccceeecchHHHH-HH-hCCChhh-HHHHHHHHhhhhccccccchhhhhhhccCCch
Q 012908 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMS-QS-LGYDNTH-IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 319 (453)
Q Consensus 243 t~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~-~a-lg~~~~~-~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r 319 (453)
+.++.+|++.||.+.+..++..... ...+...... +. ++.++.. .......+...+|-++++.++||++||+.
T Consensus 221 ~~~~~~~n~~~~~l~~~~~~~~~~~-~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~--- 296 (444)
T PRK09669 221 DLKLLLGNSQWRIMFIFNVVLLTAV-VTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRA--- 296 (444)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHH-HHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH---
Confidence 3567789999999877665442221 1112211111 11 1211111 23334456677888899999999877432
Q ss_pred hHHHHHHHHHHH-HHHHHHhc--cCchhHHHHHHHHHhhhhhhcchhHHHHHHhh-------cccchhhhhhhH
Q 012908 320 PVAMAVAQFVMA-IGHIFLGM--GWPGAMYVGTLLIGLGYGAHWAIVPAAASELF-------GLKKFGALYNFL 383 (453)
Q Consensus 320 ~~~l~~~~~~~~-~~~ll~~~--~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~F-------G~k~fg~~yg~~ 383 (453)
+... .++.+ .+..++.. .+...+++..++.|+++|+...+..++++|.. |.|.-|..|++.
T Consensus 297 -~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~ 367 (444)
T PRK09669 297 -FKWT--IVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTN 367 (444)
T ss_pred -HHHH--HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHH
Confidence 2211 22111 12222222 22334677788999999999999999999987 777777777774
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00099 Score=69.09 Aligned_cols=179 Identities=15% Similarity=0.232 Sum_probs=120.0
Q ss_pred CHHHHhhcHHHHHHHHHHHhhccccceeecchHHHHHHh-CCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCch
Q 012908 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSL-GYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 319 (453)
Q Consensus 243 t~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~al-g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r 319 (453)
+..+.+|++.-|..+++.++..+...+...=++++.++. |.+... ...-+++++.++|-++.|.+.|| +. |
T Consensus 203 ~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~-----~ 276 (394)
T COG2814 203 TLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GP-----R 276 (394)
T ss_pred HHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cc-----h
Confidence 467899999999999999999999999999999999986 556543 47778999999999999999998 22 2
Q ss_pred hHHHHHHHHHHHHHHHHHh-c-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhh----hhhhHhhhhhhHhhh
Q 012908 320 PVAMAVAQFVMAIGHIFLG-M-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGA----LYNFLTLANPAGSIF 393 (453)
Q Consensus 320 ~~~l~~~~~~~~~~~ll~~-~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~----~yg~~~la~~ig~~l 393 (453)
... .....++++..+.+. . ..+........+.|++.+..-.....-.++ ...++-+. |-..+.+|..+|+.+
T Consensus 277 ~~l-~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~l 354 (394)
T COG2814 277 RAL-IAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAAL 354 (394)
T ss_pred hHH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 222 223333333333332 2 223233344455666666666666666666 43454433 333345666666655
Q ss_pred hcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012908 394 TSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 438 (453)
Q Consensus 394 ~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r~r~ 438 (453)
-+. .|. ..|..+.++.+.+.+++.++.++-.+++||
T Consensus 355 GG~v~~~---------~g~~~~~~~~a~l~~~a~~~~~~~~~~~~~ 391 (394)
T COG2814 355 GGLVLDA---------LGYAATGWVGAALLLLALLLALLSARKDRR 391 (394)
T ss_pred HHHHHHh---------hchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 553 221 248999999999998888888776655554
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00065 Score=68.58 Aligned_cols=138 Identities=14% Similarity=0.207 Sum_probs=92.1
Q ss_pred hHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhccCchhHHHHHHH
Q 012908 274 LGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLL 351 (453)
Q Consensus 274 ~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~~~~~~l~~~~~l 351 (453)
+.++.+++|.+..+ ...++..+...++.+..|.++||+++|+. +.+..++.+++.++....+...+.+..++
T Consensus 23 lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (355)
T TIGR00896 23 LPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERS------VAAGLLLIAAGILIRSAPGTALLFAGTAL 96 (355)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHH------HHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34566778887654 48889999999999999999999988532 22333334444443333444567778889
Q ss_pred HHhhhhhhcchhHHHHHHhhcccchhhhhhhHhh----hhhhHhhhhcC-cCCCCCCcccCCcccHHHHHHHHHHHHHH
Q 012908 352 IGLGYGAHWAIVPAAASELFGLKKFGALYNFLTL----ANPAGSIFTSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVA 425 (453)
Q Consensus 352 iG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~l----a~~ig~~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~ 425 (453)
.|++.|......+.++.|.|. ++-++..|+... +..+|+.+... .+.. +. -+|..|.+.+++++++
T Consensus 97 ~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~------~~-~w~~~f~~~~~~~~~~ 167 (355)
T TIGR00896 97 IGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHS------GG-HWQQALAWWALPALLA 167 (355)
T ss_pred HHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hh-hHHHHHHHHHHHHHHH
Confidence 999999999999999999995 777777777643 44444443332 1110 11 2778887776554443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00048 Score=68.13 Aligned_cols=137 Identities=21% Similarity=0.268 Sum_probs=90.7
Q ss_pred hcHHHHHHHHHHHhhccccceeecchHHH-HHH-hCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHH
Q 012908 249 IKADFWLIFFSLLLGSGSGLTVIDNLGQM-SQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMA 324 (453)
Q Consensus 249 ~s~~FWll~~~~~~~~g~gl~~i~n~~~i-~~a-lg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~ 324 (453)
-.+.||+++++.+|-.-+-.-.|. ++|+ .++ .|.++.+ ...|.+-.-++.---..|.++|+.+++ .|+++
T Consensus 262 f~ppfw~~~iicv~yyva~fPFi~-lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n-----~~wv~ 335 (459)
T KOG4686|consen 262 FYPPFWVLVIICVLYYVAWFPFIT-LGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFN-----LWWVA 335 (459)
T ss_pred cCccHHHHHHHHHHHHHHHHHHhh-hhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcce-----ehhHH
Confidence 368899999998875444333332 3333 233 4777543 255555555666677889999999885 35567
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHhhhhh----hcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcC
Q 012908 325 VAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGA----HWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSM 396 (453)
Q Consensus 325 ~~~~~~~~~~ll~~~~~~~~l~~~~~liG~~yG~----~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~ 396 (453)
-+.+....+|..+.+... .-|.+..+.|++|-. .|.+.|.+++|. ..|+-||++. +|-.+-+++.+-
T Consensus 336 ~a~~~tl~~H~~l~Ft~l-sPy~~m~~lGLsysllAcslWP~va~~vpE~----qLGTaygf~qsIqNLgla~i~Iiag~ 410 (459)
T KOG4686|consen 336 SACILTLLGHSGLFFTFL-SPYTSMTFLGLSYSLLACSLWPCVASLVPEE----QLGTAYGFIQSIQNLGLAFIPIIAGF 410 (459)
T ss_pred HHHHHHHHHhhhHHhhhc-cHHHHHHHHhhhHHHHHHHHhhhhhhhCCHH----HhcchHHHHHHHHhhhhhHHhhhhhe
Confidence 777778888876554432 246688889999975 566777777764 6677777763 666666666553
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00034 Score=59.33 Aligned_cols=127 Identities=12% Similarity=0.195 Sum_probs=85.4
Q ss_pred HHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHHHHH
Q 012908 291 SMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASE 369 (453)
Q Consensus 291 sl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~ 369 (453)
+..++.+.++++..|++.||++||+ .+.....+..++.++... .+...+.+...+.|++.|.........+.|
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 78 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKP------VLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIAD 78 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhH------HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3456788889999999999987643 223333344444433332 334456678899999999999999999999
Q ss_pred hhcccchhhhhhhHh----hhhhhHhhhhcCcCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 012908 370 LFGLKKFGALYNFLT----LANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 431 (453)
Q Consensus 370 ~FG~k~fg~~yg~~~----la~~ig~~l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~ 431 (453)
.+..++.++..|+.. ++..+|+.+.+... ....|+..|.+....++++.+....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (141)
T TIGR00880 79 IYPPEERGVALGLMSAGIALGPLLGPPLGGVLA--------QFLGWRAPFLFLAILALAAFILLAF 136 (141)
T ss_pred HCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh--------cccchHHHHHHHHHHHHHHHHHHhh
Confidence 999888888888865 44444444433211 1224788888887777666555543
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00057 Score=70.08 Aligned_cols=101 Identities=17% Similarity=0.233 Sum_probs=71.5
Q ss_pred HHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHH--H-h-cc-----CchhH
Q 012908 277 MSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIF--L-G-MG-----WPGAM 345 (453)
Q Consensus 277 i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll--~-~-~~-----~~~~l 345 (453)
+.+++|.++.+ ...++..+...++.+..|.++||++||+-. ....++.+++.+. + . .. ....+
T Consensus 42 i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 115 (399)
T PRK05122 42 VHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAV------VFGLCGCALSGLLYLLAGLLAAWPVLSLLLL 115 (399)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchH------HHHHHHHHHHHHHHHHhhhhhccchhHHHHH
Confidence 55677877654 488899999999999999999999886432 2222222222111 1 1 11 11246
Q ss_pred HHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH
Q 012908 346 YVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL 383 (453)
Q Consensus 346 ~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~ 383 (453)
++.-++.|++.|.........+.|.+..|+.++.-++.
T Consensus 116 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 153 (399)
T PRK05122 116 LLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWN 153 (399)
T ss_pred HHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhh
Confidence 77888999999999999999999999889888887764
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00041 Score=73.59 Aligned_cols=133 Identities=11% Similarity=0.101 Sum_probs=78.2
Q ss_pred HHHhhcHHHHHHHHHHHhhccccceeecchHH-HHHH-hCCChh-hHHHHHHHHhhhhccccccchhhhhhhccCCchhH
Q 012908 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQ-MSQS-LGYDNT-HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 321 (453)
Q Consensus 245 ~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~-i~~a-lg~~~~-~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~ 321 (453)
+..++++.|+.+..+.++...... ..+.... ..+. ++..+. ..+.++.++...++-+++|.++||+++|+. +
T Consensus 225 ~~~~~n~~~~~ll~~~~~~~~~~~-~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~----~ 299 (473)
T PRK10429 225 ALIYKNDQLSCLLGMALAYNIASN-IINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRIL----W 299 (473)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHH-HHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH----H
Confidence 344578888887776665543222 1111111 1111 121111 124455567788888999999999987532 2
Q ss_pred HHHHHHHHHHHHHHHH-----hc-cCchhHHHHHHHHHhhhhhhcchhHHHHHHh-------hcccchhhhhhhHh
Q 012908 322 AMAVAQFVMAIGHIFL-----GM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASEL-------FGLKKFGALYNFLT 384 (453)
Q Consensus 322 ~l~~~~~~~~~~~ll~-----~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~-------FG~k~fg~~yg~~~ 384 (453)
. +..++.+++.+.+ .. .+...+.+..++.|+++|..+.+.+++++|. .|.|.-|..|++..
T Consensus 300 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~ 373 (473)
T PRK10429 300 A--GASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQT 373 (473)
T ss_pred H--HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHH
Confidence 2 2222222222221 11 1123456677889999999999999999998 88888888888853
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00055 Score=80.30 Aligned_cols=138 Identities=8% Similarity=0.035 Sum_probs=87.8
Q ss_pred HHHhhcHHHHHHHHHHHhhccccceeecchHHHHH-HhCCCh----h---hHHHHHHHHhhhhccccccchhhhhhhccC
Q 012908 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDN----T---HIFVSMISIWNFLGRVGGGYFSEIIVRDYA 316 (453)
Q Consensus 245 ~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~-alg~~~----~---~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~ 316 (453)
++++++++|+.+|+..++....--++-..+..+.. .+..+. . ....+++.+...+.-+++|.++||++||+-
T Consensus 5 ~~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~ 84 (1140)
T PRK06814 5 LYLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKL 84 (1140)
T ss_pred hhhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHH
Confidence 35788999999988877765332222222222221 222211 1 124445667778888999999999988542
Q ss_pred CchhHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh
Q 012908 317 YPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT 384 (453)
Q Consensus 317 ~~r~~~l~~~~~~~~~~~ll~~~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~ 384 (453)
+ + +......+...++.+.+...+...+++..++.|++.++.+...-+++.++|..+..++-.|+..
T Consensus 85 ~-~-~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~ 150 (1140)
T PRK06814 85 A-K-ILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVE 150 (1140)
T ss_pred H-H-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHH
Confidence 1 1 1112222222222222233445578889999999999999999999999999999998888864
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00097 Score=68.67 Aligned_cols=143 Identities=11% Similarity=0.051 Sum_probs=87.2
Q ss_pred cchHHHHH-HhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHh-ccCchhHHH
Q 012908 272 DNLGQMSQ-SLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGWPGAMYV 347 (453)
Q Consensus 272 ~n~~~i~~-alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~~l~~ 347 (453)
.......+ .+|+++.. ...++..+...+|+++.|.++||+++|+. .. .......+...... ..++..+.+
T Consensus 237 ~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~l~ 310 (393)
T PRK15011 237 INMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFL----MR--VAAVAGVCFYAGMLMAHSPAILLG 310 (393)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH----HH--HHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444443 46777543 35666677788899999999999987531 11 11111111121111 233334455
Q ss_pred HHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH----hhhhhhHhhhhcC-cCCCCCCcccCCcccHHHHHHHHHHH
Q 012908 348 GTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL----TLANPAGSIFTSM-PRVDEPLKCEGSICYFLTSMIMSGLC 422 (453)
Q Consensus 348 ~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~----~la~~ig~~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~ 422 (453)
...+.++++|...+..+....|.+. ++-|+..++. .++..+|+.+.+. .+. ..|+..|.+....+
T Consensus 311 ~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~---------~g~~~~~~~~~~~~ 380 (393)
T PRK15011 311 LQLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEI---------WNYHAVFWFALVMI 380 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhHHHHHHHHHHH
Confidence 6667778888888888888999987 5577766653 4566666665553 221 13888888877776
Q ss_pred HHHHHHHH
Q 012908 423 IVAVILSM 430 (453)
Q Consensus 423 ~~~~~l~l 430 (453)
+++.++.+
T Consensus 381 ~~~~~~~~ 388 (393)
T PRK15011 381 IATLFCLL 388 (393)
T ss_pred HHHHHHHH
Confidence 66555544
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0055 Score=63.83 Aligned_cols=118 Identities=14% Similarity=0.021 Sum_probs=58.0
Q ss_pred HHHHhhcHHHHHHHHHHHhhccccceeecchHHHHHHh-CCChhhH--HHHHHHHhhhhccccccchhhhhhhccCCchh
Q 012908 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSL-GYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (453)
Q Consensus 244 ~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~al-g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~ 320 (453)
.++.++++.||...+.+++....-..+..-...+.++. |.+.... ..........+| +.+..++.+++..+|.
T Consensus 211 ~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~----~~l~~~~~~~~~~~~~ 286 (413)
T PRK15403 211 FRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVA----NAIVARFVKDPTEPRF 286 (413)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHH----HHHHHHHhccCCchhH
Confidence 45788999999988877665544433444445566664 6665432 111222233333 3333343333222332
Q ss_pred HHHHHHHHHHHHHHHHHh-----ccCc-hhHHHHHHHHHhhhhhhcchhHHHH
Q 012908 321 VAMAVAQFVMAIGHIFLG-----MGWP-GAMYVGTLLIGLGYGAHWAIVPAAA 367 (453)
Q Consensus 321 ~~l~~~~~~~~~~~ll~~-----~~~~-~~l~~~~~liG~~yG~~~~~~p~i~ 367 (453)
.... ..++.++.+++. ..+. ..++++.++.|++.|...+......
T Consensus 287 ~~~~--~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~a 337 (413)
T PRK15403 287 IWRA--VPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFRFT 337 (413)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 2111 111222221111 1121 1245677888888888776666433
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0014 Score=70.19 Aligned_cols=159 Identities=13% Similarity=0.083 Sum_probs=98.5
Q ss_pred hccccceeecc-hHHHHHHhCCChhhH-HHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhcc
Q 012908 263 GSGSGLTVIDN-LGQMSQSLGYDNTHI-FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMG 340 (453)
Q Consensus 263 ~~g~gl~~i~n-~~~i~~alg~~~~~~-~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~~ 340 (453)
..|...++++. +..+.++.|.+..++ ..++++.. .++++++|.++||+.+.+.=.|..++.+.++.++++...++..
T Consensus 23 ~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~ 101 (491)
T PRK11010 23 ASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFL 101 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 44444444444 444555667765443 44444444 3689999999999832110012233455555555554443332
Q ss_pred C----chhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhhhhHhhhhcC-----cCCCCCCcccCCccc
Q 012908 341 W----PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSM-----PRVDEPLKCEGSICY 411 (453)
Q Consensus 341 ~----~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~ig~~l~~~-----~~~~~~~~C~G~~Cy 411 (453)
. ...+.+..++.|++.+.......+++.|+|..|+.|+.-++...+..+|..+.+. .+. ...+
T Consensus 102 ~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~--------~~GW 173 (491)
T PRK11010 102 EPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR--------YLGW 173 (491)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccCH
Confidence 2 2246667888999999999999999999999899998888876555444433221 110 1249
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012908 412 FLTSMIMSGLCIVAVILSM 430 (453)
Q Consensus 412 ~~~f~i~~~~~~~~~~l~l 430 (453)
|.+|.+.+++.+++.+..+
T Consensus 174 r~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 174 QGMYWLMAALLIPCIIATL 192 (491)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999887777655444
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.004 Score=64.38 Aligned_cols=143 Identities=15% Similarity=0.021 Sum_probs=71.1
Q ss_pred HHhhcHHHHHHHHHHHhhccccceeecchHHHHHH-hCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHH
Q 012908 246 QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVA 322 (453)
Q Consensus 246 ~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~a-lg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~ 322 (453)
+.++++.++...+..++..+.......-.....++ +|.++.. ...+..++...+|-+..|.+.|+..+ .| ..
T Consensus 200 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~----~~-~~ 274 (393)
T PRK11195 200 VLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETV----LR-VL 274 (393)
T ss_pred HHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcc----cc-hH
Confidence 44555665554444333333332222222334443 5666543 25556666666666666655554322 22 22
Q ss_pred HHHHHHHHHHHHHHHhccC-chhHHHHHHHHHhhhhhhcchhHHHHHHhhcccch--hhhhhhHh----hhhhhHhhhhc
Q 012908 323 MAVAQFVMAIGHIFLGMGW-PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKF--GALYNFLT----LANPAGSIFTS 395 (453)
Q Consensus 323 l~~~~~~~~~~~ll~~~~~-~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~f--g~~yg~~~----la~~ig~~l~~ 395 (453)
.... ++.+..+++...+ +..+.+..++.|++.|.........+.+. ..++. |...++.. ++.+++..+++
T Consensus 275 -~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~-~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~ 351 (393)
T PRK11195 275 -PAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHR-GHVLVGAGHSIAVQNFNENLAMLLMLGLYS 351 (393)
T ss_pred -HHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhh-CcccccchhHHHHHhHHHHHHHHHHHHHHH
Confidence 2222 2222222222222 22344566688998888777777777765 55554 66666653 44455555544
Q ss_pred C
Q 012908 396 M 396 (453)
Q Consensus 396 ~ 396 (453)
.
T Consensus 352 ~ 352 (393)
T PRK11195 352 L 352 (393)
T ss_pred H
Confidence 3
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00063 Score=72.45 Aligned_cols=127 Identities=15% Similarity=0.132 Sum_probs=81.8
Q ss_pred HHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhccCc-h--------hHHHHHHHHHhhhhhhcc
Q 012908 291 SMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWP-G--------AMYVGTLLIGLGYGAHWA 361 (453)
Q Consensus 291 sl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~~~~-~--------~l~~~~~liG~~yG~~~~ 361 (453)
++.-++-.+|.+..|+++||++||+ .+.+..++++++.++.+..+. . .+.+.=++.|++.|+.++
T Consensus 64 ~~~~l~~~ig~~~~G~l~Dr~Grr~------~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~ 137 (490)
T PRK10642 64 SVPFLIRPLGGLFFGMLGDKYGRQK------ILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYT 137 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHH------HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHH
Confidence 4445667889999999999998863 345556666666665544332 1 266778899999999999
Q ss_pred hhHHHHHHhhcccchhhhhhhHhhhhh----hHhhhhcCc-CCCCCCcccCCcccHHHHHHHHHHHHH
Q 012908 362 IVPAAASELFGLKKFGALYNFLTLANP----AGSIFTSMP-RVDEPLKCEGSICYFLTSMIMSGLCIV 424 (453)
Q Consensus 362 ~~p~i~s~~FG~k~fg~~yg~~~la~~----ig~~l~~~~-~~~~~~~C~G~~Cy~~~f~i~~~~~~~ 424 (453)
....+++|+|..|+-|+.-++...+.. +|+.+.... ..-. ......--+|..|++.+...++
T Consensus 138 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~-~~~~~~~gWR~~f~i~~~~~l~ 204 (490)
T PRK10642 138 GASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVG-EANFLDWGWRIPFFIALPLGII 204 (490)
T ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHhcCccHHHHHHHHHHHHHH
Confidence 999999999998888887666654333 333221110 0000 0000112489999886654443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0035 Score=65.72 Aligned_cols=121 Identities=15% Similarity=0.157 Sum_probs=77.8
Q ss_pred HhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhccCc-h--------hHHHHHHHHHhhhhhhcchhHH
Q 012908 295 IWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWP-G--------AMYVGTLLIGLGYGAHWAIVPA 365 (453)
Q Consensus 295 i~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~~~~-~--------~l~~~~~liG~~yG~~~~~~p~ 365 (453)
++..+|.+..|+++||++||+ .+.+...+..++.++....+. . .+.+.-.+.|++.|+.++....
T Consensus 75 ~~~~~g~~~~G~l~Dr~Grr~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~ 148 (438)
T PRK09952 75 LFRPLGGVVFGHFGDRLGRKR------MLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAAL 148 (438)
T ss_pred HHHhhHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHH
Confidence 345577788899999998853 334455555666555444332 2 3666788999999999999999
Q ss_pred HHHHhhcccchhhhhhhHhhhhhhHhhhhcC-----cCCCCCCcccCCcccHHHHHHHHHHH
Q 012908 366 AASELFGLKKFGALYNFLTLANPAGSIFTSM-----PRVDEPLKCEGSICYFLTSMIMSGLC 422 (453)
Q Consensus 366 i~s~~FG~k~fg~~yg~~~la~~ig~~l~~~-----~~~~~~~~C~G~~Cy~~~f~i~~~~~ 422 (453)
+++|.+..|+-|..-+....+..+|+.+... ....++... ....+|..|++.+...
T Consensus 149 ~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~-~~~gWr~~f~~~~~~~ 209 (438)
T PRK09952 149 LAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQF-LSWGWRIPFLFSIVLV 209 (438)
T ss_pred HHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHh-hccChHHHHHHHHHHH
Confidence 9999999888887777666555555443221 000000000 1235899998776544
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00056 Score=72.61 Aligned_cols=141 Identities=16% Similarity=0.175 Sum_probs=96.7
Q ss_pred HHHHHhCCC---hh--hHHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHHH
Q 012908 276 QMSQSLGYD---NT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGT 349 (453)
Q Consensus 276 ~i~~alg~~---~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~-~~~~~l~~~~ 349 (453)
.|.++.+.+ +. ....+++.++..+|.+.+|.++||++||+ .+.+..++..++.++... .+...+.+.-
T Consensus 114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~r 187 (505)
T TIGR00898 114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKK------VLLLSTLVTAVSGVLTAFSPNYTVFLVFR 187 (505)
T ss_pred cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchH------HHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 444555554 22 34788999999999999999999998852 233344444455444333 3445677888
Q ss_pred HHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhhhhHhhhhcCcCCCCCCcccCCcccHHHHHHHHHHHHHHHHHH
Q 012908 350 LLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILS 429 (453)
Q Consensus 350 ~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~ig~~l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~ 429 (453)
++.|++.|+.+.....+++|+++.|+-+..-++...+..+|..+....... ..-+|..|.+.+..+++..+..
T Consensus 188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~-------~~~wr~~~~~~~i~~~~~~~~~ 260 (505)
T TIGR00898 188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYF-------IPDWRWLQLAVSLPTFLFFLLS 260 (505)
T ss_pred HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888887777655555554432220000 0018999988887776665554
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0015 Score=69.70 Aligned_cols=94 Identities=17% Similarity=0.231 Sum_probs=70.4
Q ss_pred HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cC------chhHHHHHHHHHhhhhhhc
Q 012908 288 IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GW------PGAMYVGTLLIGLGYGAHW 360 (453)
Q Consensus 288 ~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~-~~------~~~l~~~~~liG~~yG~~~ 360 (453)
...+...++..+|.+.+|+++||++||+. +.+..++..++.++... .. ...+.+.-++.|++.|+.+
T Consensus 60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~~------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~ 133 (502)
T TIGR00887 60 AVNGSASIGTLAGQLFFGWLADKLGRKRV------YGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDY 133 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhh
Confidence 47888999999999999999999988632 23333333333333222 11 2357788899999999999
Q ss_pred chhHHHHHHhhcccchhhhhhhHhhhh
Q 012908 361 AIVPAAASELFGLKKFGALYNFLTLAN 387 (453)
Q Consensus 361 ~~~p~i~s~~FG~k~fg~~yg~~~la~ 387 (453)
+..|.+++|.|..|+-|+..++.....
T Consensus 134 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~ 160 (502)
T TIGR00887 134 PLSAIITSEFATKKWRGAMMAAVFAMQ 160 (502)
T ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHH
Confidence 999999999999999999888865333
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0023 Score=64.43 Aligned_cols=141 Identities=10% Similarity=-0.031 Sum_probs=82.2
Q ss_pred HHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHH
Q 012908 277 MSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIG 353 (453)
Q Consensus 277 i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~-~~~~~l~~~~~liG 353 (453)
+.+++|.++.. ...++..+...+.....|.++||++||+. +. ....++..++.++... .+...+++...+.|
T Consensus 24 l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~----~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 98 (375)
T TIGR00899 24 LSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKG----LI-LFCCLLAALACLLFAWNRNYFLLLVLGVLLS 98 (375)
T ss_pred HHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchH----HH-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 34567877554 37778888899999999999999987432 22 2223333333333333 23334555666777
Q ss_pred hhhhhhcchhHHHHHHhhcccchh--hhhhhH----hhhhhhHhhhhcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHH
Q 012908 354 LGYGAHWAIVPAAASELFGLKKFG--ALYNFL----TLANPAGSIFTSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAV 426 (453)
Q Consensus 354 ~~yG~~~~~~p~i~s~~FG~k~fg--~~yg~~----~la~~ig~~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~ 426 (453)
...++.......++.|....+.-+ ..+|.. .++..+|+.+.+. .+. .-+|..|++.+..+++..
T Consensus 99 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~---------~~~~~~f~~~~~~~~~~~ 169 (375)
T TIGR00899 99 SFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG---------FGFTVMFLTAALAFVLCG 169 (375)
T ss_pred hhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh---------cccHHHHHHHHHHHHHHH
Confidence 777776666666777776433222 113432 3455555544332 111 138999999887766665
Q ss_pred HHHHH
Q 012908 427 ILSMI 431 (453)
Q Consensus 427 ~l~l~ 431 (453)
++...
T Consensus 170 ~~~~~ 174 (375)
T TIGR00899 170 VLVWL 174 (375)
T ss_pred HHHHH
Confidence 55544
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.001 Score=70.39 Aligned_cols=171 Identities=19% Similarity=0.333 Sum_probs=112.8
Q ss_pred HHhhcHHHHHHHHHHHhhccccceeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHH
Q 012908 246 QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 323 (453)
Q Consensus 246 ~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l 323 (453)
-++-..|||==|-=+..- ++...+-.-+..+.+|+++++ .+++.++-...+--++.||++||+.-++ | .+
T Consensus 24 ~~if~vE~WERFsyYGmr---aiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~---~--tI 95 (498)
T COG3104 24 YLIFFVELWERFSYYGMR---AILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTR---R--TI 95 (498)
T ss_pred HHHHHHHHHHHHhhhhhH---HHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchh---H--HH
Confidence 355666666554433221 111112222222336687654 3888888888999999999999984432 2 34
Q ss_pred HHHHHHHHHHHHHHhcc---CchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhh------hhhHhhhhhhHhhhh
Q 012908 324 AVAQFVMAIGHIFLGMG---WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGAL------YNFLTLANPAGSIFT 394 (453)
Q Consensus 324 ~~~~~~~~~~~ll~~~~---~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~------yg~~~la~~ig~~l~ 394 (453)
+...+++++||+++... .+..++++-+++++++|..=+-...+++|.++.++--+- |=.+.+++.++|++.
T Consensus 96 ~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~ 175 (498)
T COG3104 96 VLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIIT 175 (498)
T ss_pred HHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHH
Confidence 66788889999988765 366899999999999999999999999999997654333 333346666666665
Q ss_pred cCcCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHH
Q 012908 395 SMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 432 (453)
Q Consensus 395 ~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l 432 (453)
+... ...||...|-+++.-..+|++..+..
T Consensus 176 ~~~~--------~~~g~~~gF~~aavGm~~gl~~f~~~ 205 (498)
T COG3104 176 GLLA--------INYGWHVGFGLAAVGMIIGLVIFLLG 205 (498)
T ss_pred HHHH--------HhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 5411 12458888877776655555554443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0051 Score=61.98 Aligned_cols=155 Identities=11% Similarity=0.034 Sum_probs=89.9
Q ss_pred hHHHHHHhCCChhhH-HHHHHHHhhhhccccccchhhhhhh-ccCCchhHHHHHHHHHHHHHHHHHhccC--ch--hHHH
Q 012908 274 LGQMSQSLGYDNTHI-FVSMISIWNFLGRVGGGYFSEIIVR-DYAYPRPVAMAVAQFVMAIGHIFLGMGW--PG--AMYV 347 (453)
Q Consensus 274 ~~~i~~alg~~~~~~-~Vsl~si~n~~GRl~~G~lsD~l~~-~~~~~r~~~l~~~~~~~~~~~ll~~~~~--~~--~l~~ 347 (453)
+..+.++.|.+..+. ..+...+...+ ++++|.++||+.. +.+.-|+|. ....++.++..+.+.... .. .++.
T Consensus 11 ~~~~~~~~g~s~~~~g~~~~~~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l-~~~~~~~~~~~~~l~~~~~~~~l~~l~~ 88 (356)
T TIGR00901 11 LPYWLRSKNVSLKTIGFFSLVGLPYSL-KFLWSPLVDTVYLPFFGRRRSWL-VLTQVLLLSLLLILSFLVPSTDLPLLAG 88 (356)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCccHHHH-HHHHHHHHHHHHHHHcCCcchhHHHHHH
Confidence 445667888887654 33433444443 8999999999842 122223343 344444444433332221 22 3555
Q ss_pred HHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhhhhHhh----hhcC-cCCCCCCcccCCcccHHHHHHHHHHH
Q 012908 348 GTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSI----FTSM-PRVDEPLKCEGSICYFLTSMIMSGLC 422 (453)
Q Consensus 348 ~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~ig~~----l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~ 422 (453)
...+.+++++......-+++.|++..|+-+..-|+...+..+|.. +... ....++.. ..+..+|.+|.+.+...
T Consensus 89 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~-~~~~~wr~~f~i~ai~~ 167 (356)
T TIGR00901 89 LAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANT-GLITLWGYIFFWTALLI 167 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccc-ccccccHHHHHHHHHHH
Confidence 566778888888888889999999888888887776544333333 2221 11111000 12446999998888776
Q ss_pred HHHHHHHHH
Q 012908 423 IVAVILSMI 431 (453)
Q Consensus 423 ~~~~~l~l~ 431 (453)
+++.+..++
T Consensus 168 l~~~~~~~~ 176 (356)
T TIGR00901 168 LPGLLVTLF 176 (356)
T ss_pred HHHHHHHHH
Confidence 665544443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0031 Score=63.31 Aligned_cols=123 Identities=17% Similarity=0.269 Sum_probs=77.5
Q ss_pred hhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhccCc---------hhHHHHHHHHHhhhhhhcchhHHHH
Q 012908 297 NFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWP---------GAMYVGTLLIGLGYGAHWAIVPAAA 367 (453)
Q Consensus 297 n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~~~~---------~~l~~~~~liG~~yG~~~~~~p~i~ 367 (453)
..+|.+..|.++||++||+ .+.+..++..++.++....+. ..+.+.-++.|++.|..+...+.++
T Consensus 48 ~~i~~~~~G~l~dr~g~r~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~ 121 (394)
T TIGR00883 48 RPLGAIVFGHFGDRIGRKK------TLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYL 121 (394)
T ss_pred hhhHHHHhhhhhhhhhhHH------HHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHh
Confidence 3468889999999998752 233445555555555433221 1366677899999999999999999
Q ss_pred HHhhcccchhhhhhhHhhhhhhHhhhhcC-----cCCCCCCcccCCcccHHHHHHHHHHHHHHH
Q 012908 368 SELFGLKKFGALYNFLTLANPAGSIFTSM-----PRVDEPLKCEGSICYFLTSMIMSGLCIVAV 426 (453)
Q Consensus 368 s~~FG~k~fg~~yg~~~la~~ig~~l~~~-----~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~ 426 (453)
+|.+..|+-|...++...+..+|+.+.+. ....++.. ...-.+|.+|++.+.+++++.
T Consensus 122 ~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 122 AEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDA-LLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred hhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-hhccchHHHHHHHHHHHHHHH
Confidence 99999888888777765544444433221 00000000 012248888888766655543
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.032 Score=59.65 Aligned_cols=148 Identities=16% Similarity=0.135 Sum_probs=88.2
Q ss_pred CCCCHHHHhhcHH----HHHHHHHHHhhccccceeec-chHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhh
Q 012908 240 EDFTLTQALIKAD----FWLIFFSLLLGSGSGLTVID-NLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIV 312 (453)
Q Consensus 240 ~~~t~~~~l~s~~----FWll~~~~~~~~g~gl~~i~-n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~ 312 (453)
++.+++|.+++++ .++.....++-..+|...++ ..-.|.++.|.+... ..-...++.|....+.+.++.||++
T Consensus 254 ~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~g 333 (485)
T KOG0569|consen 254 KQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLG 333 (485)
T ss_pred cCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5678888888643 45566666666777777554 455677888888653 3566788999999999999999998
Q ss_pred hccCCchhHHHHHHHHHHHHHHHHH-------hccCchh---HHHHHHHHHhhhhhhcc-hhHHHHHHhhcccchhhhhh
Q 012908 313 RDYAYPRPVAMAVAQFVMAIGHIFL-------GMGWPGA---MYVGTLLIGLGYGAHWA-IVPAAASELFGLKKFGALYN 381 (453)
Q Consensus 313 ~~~~~~r~~~l~~~~~~~~~~~ll~-------~~~~~~~---l~~~~~liG~~yG~~~~-~~p~i~s~~FG~k~fg~~yg 381 (453)
|| |..+ ....++.+..+++ ....+.. ...+..+..+.|+...+ +-..+++|+|..++=++-..
T Consensus 334 RR-----pLll-~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s 407 (485)
T KOG0569|consen 334 RR-----PLLL-ISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQS 407 (485)
T ss_pred Cc-----HHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHH
Confidence 84 2322 2222222222221 1111111 12233333444444433 33467899999887776666
Q ss_pred hHhhhhhhHhhh
Q 012908 382 FLTLANPAGSIF 393 (453)
Q Consensus 382 ~~~la~~ig~~l 393 (453)
+....+-++.++
T Consensus 408 ~~~~~~w~~~fi 419 (485)
T KOG0569|consen 408 VATAVNWLSNFI 419 (485)
T ss_pred HHHHHHHHHHHH
Confidence 655444444443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0013 Score=69.29 Aligned_cols=129 Identities=11% Similarity=0.038 Sum_probs=88.4
Q ss_pred HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHH--hc-cCchhHHHHHHHHHhhhhhhcchhH
Q 012908 288 IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFL--GM-GWPGAMYVGTLLIGLGYGAHWAIVP 364 (453)
Q Consensus 288 ~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~--~~-~~~~~l~~~~~liG~~yG~~~~~~p 364 (453)
...+.+.+...++.+..|+++||+++|+.. ....++..++.++. .. .....+++.-++.|++.|..+...+
T Consensus 80 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~ 153 (465)
T TIGR00894 80 LILSSHFYGQIIIQIPVGYLAGKYVFKWSI------GIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATH 153 (465)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHhCcchhh------HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHH
Confidence 478888899999999999999999886422 33333333333332 21 2233577788899999999999999
Q ss_pred HHHHHhhcccchhhhhhhHhh----hhhhHhhhhcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHH
Q 012908 365 AAASELFGLKKFGALYNFLTL----ANPAGSIFTSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSM 430 (453)
Q Consensus 365 ~i~s~~FG~k~fg~~yg~~~l----a~~ig~~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l 430 (453)
.+++|+|..|+-|+-.|+... +..+|+.+.+. .+. ...++.+|++.+.+.++..++..
T Consensus 154 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~--------~~gw~~~f~i~~~~~~~~~~~~~ 216 (465)
T TIGR00894 154 KIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCES--------WGGWPMIFYVFGIVGCAWSLLWF 216 (465)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cCCCCeehhhhhHHHHHHHHHHH
Confidence 999999999999998888654 44444444332 111 01488899888776655444433
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00069 Score=74.91 Aligned_cols=148 Identities=15% Similarity=0.196 Sum_probs=97.0
Q ss_pred HHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhccC-----------
Q 012908 275 GQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGW----------- 341 (453)
Q Consensus 275 ~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~~~----------- 341 (453)
.+|-+..+.++.+ .++|.+.+++.++.+..|++.||.+|++. +.+..+++++|.++++.+.
T Consensus 57 ~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~------i~~g~ll~~lg~ll~alphf~~~~y~~~~~ 130 (633)
T TIGR00805 57 TTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIV------IGIGCAIMGLGSFLLSLPHFLSGRYSYSTT 130 (633)
T ss_pred hhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceE------EEecHHHHHHHHHHHhChHHhcCCcccccc
Confidence 3444556766544 48999999999999999999999877432 2444555555555443220
Q ss_pred -----------------------------------------chhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhh
Q 012908 342 -----------------------------------------PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALY 380 (453)
Q Consensus 342 -----------------------------------------~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~y 380 (453)
...+.++-++.|++.|..+.+.++++.|.+..|+-+...
T Consensus 131 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~ 210 (633)
T TIGR00805 131 VSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYI 210 (633)
T ss_pred ccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHH
Confidence 123567999999999999999999999999999988888
Q ss_pred hhHh----hhhhhH----hhhhcCc-CCC---CC---Cc---ccCCcccHHHHHHHHHHHHHHHHH
Q 012908 381 NFLT----LANPAG----SIFTSMP-RVD---EP---LK---CEGSICYFLTSMIMSGLCIVAVIL 428 (453)
Q Consensus 381 g~~~----la~~ig----~~l~~~~-~~~---~~---~~---C~G~~Cy~~~f~i~~~~~~~~~~l 428 (453)
|+.. +|+.+| +++.+.. |-. .+ .. -.-.+.++..|++.+.+.++..+.
T Consensus 211 ~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~ 276 (633)
T TIGR00805 211 GILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP 276 (633)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 8864 333333 3333221 100 00 00 001235788898888777665544
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.074 Score=57.09 Aligned_cols=148 Identities=11% Similarity=0.093 Sum_probs=89.3
Q ss_pred HHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhccC----------chhHHHHHHHHHhhhhh
Q 012908 289 FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGW----------PGAMYVGTLLIGLGYGA 358 (453)
Q Consensus 289 ~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~~~----------~~~l~~~~~liG~~yG~ 358 (453)
+-++.+++..+.-...+++-.|+.+|. +.+..+.+..++++++.+.+.... ...+.+..++.|++-+.
T Consensus 321 ~~s~n~i~iil~~p~~~~~~~~l~~r~--~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~ 398 (500)
T PRK09584 321 YQALNPFWIMIGSPILAAIYNKMGDRL--PMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELM 398 (500)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhCcCC--CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHH
Confidence 334444333333333344445555543 344555666777777765532211 12577799999999999
Q ss_pred hcchhHHHHHHhhcccchhhhhhhHhhhhhhHhhhhcC----cC-CCCCCcccC-CcccHHHHHHHHHHHHHHHHHHHHH
Q 012908 359 HWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSM----PR-VDEPLKCEG-SICYFLTSMIMSGLCIVAVILSMIL 432 (453)
Q Consensus 359 ~~~~~p~i~s~~FG~k~fg~~yg~~~la~~ig~~l~~~----~~-~~~~~~C~G-~~Cy~~~f~i~~~~~~~~~~l~l~l 432 (453)
..++..+++.++=..+.-|.-.|+.+++..+|+++.+. .. +.....-.. .+-|...|...+.++++..++.+++
T Consensus 399 ~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~ 478 (500)
T PRK09584 399 ISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLT 478 (500)
T ss_pred HhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888999999887666666655443 11 110000111 1128888888887776555554444
Q ss_pred HHhhhh
Q 012908 433 VHRTTN 438 (453)
Q Consensus 433 ~~r~r~ 438 (453)
..+.+|
T Consensus 479 ~~~~~k 484 (500)
T PRK09584 479 APKLNR 484 (500)
T ss_pred HHHHHH
Confidence 444444
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0065 Score=63.38 Aligned_cols=136 Identities=13% Similarity=0.086 Sum_probs=86.5
Q ss_pred HHHHHHHHHhhccccceeecch-HHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHH
Q 012908 253 FWLIFFSLLLGSGSGLTVIDNL-GQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFV 329 (453)
Q Consensus 253 FWll~~~~~~~~g~gl~~i~n~-~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~ 329 (453)
|+++... ++..|....+++-+ .++-++.|.++.+ ...+...+...++.+..|.+.||+++|+ .+.+..++
T Consensus 5 ~~~~~~~-f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~------~~~~g~~l 77 (410)
T TIGR00885 5 FALITSL-FALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKA------GILLGLFL 77 (410)
T ss_pred HHHHHHH-HHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH------HHHHHHHH
Confidence 4544433 33344444333222 3444567877654 3778888999999999999999998753 33555666
Q ss_pred HHHHHHHHhc----cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhh----HhhhhhhHhhhhc
Q 012908 330 MAIGHIFLGM----GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNF----LTLANPAGSIFTS 395 (453)
Q Consensus 330 ~~~~~ll~~~----~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~----~~la~~ig~~l~~ 395 (453)
++++.+++.. .+...+.+..++.|++.|.......+.+.+....++.++.-|+ ..+|..+|+.+..
T Consensus 78 ~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~ 151 (410)
T TIGR00885 78 YALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQ 151 (410)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655422 2233566788999999999999888888877655555554444 3455555555433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0052 Score=64.16 Aligned_cols=84 Identities=18% Similarity=0.215 Sum_probs=60.2
Q ss_pred HhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhccC---------chhHHHHHHHHHhhhhhhcchhHH
Q 012908 295 IWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGW---------PGAMYVGTLLIGLGYGAHWAIVPA 365 (453)
Q Consensus 295 i~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~~~---------~~~l~~~~~liG~~yG~~~~~~p~ 365 (453)
+...+|.+.+|+++||++||+ .+....+++.++.++.+..+ +..+.+.=++.|++.|+.++....
T Consensus 74 ~~~~ig~~~~G~l~Dr~Grr~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~ 147 (432)
T PRK10406 74 LMRPIGGWLFGRIADKHGRKK------SMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSAT 147 (432)
T ss_pred HHHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHH
Confidence 334477788999999998863 33445555555555443322 124677888999999999999999
Q ss_pred HHHHhhcccchhhhhhhHh
Q 012908 366 AASELFGLKKFGALYNFLT 384 (453)
Q Consensus 366 i~s~~FG~k~fg~~yg~~~ 384 (453)
+++|.+-.|+-|.-.++..
T Consensus 148 ~i~e~~p~~~rg~~~~~~~ 166 (432)
T PRK10406 148 YMSEVAVEGRKGFYASFQY 166 (432)
T ss_pred HHHHhCCCCcccHHHHHHH
Confidence 9999999888776666543
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0025 Score=67.77 Aligned_cols=178 Identities=12% Similarity=0.087 Sum_probs=118.2
Q ss_pred HHHHHHHHhhccccceeecchH----HHHHHhCCChhh---HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHH
Q 012908 254 WLIFFSLLLGSGSGLTVIDNLG----QMSQSLGYDNTH---IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVA 326 (453)
Q Consensus 254 Wll~~~~~~~~g~gl~~i~n~~----~i~~alg~~~~~---~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~ 326 (453)
|..-..+.|.-|.--.+=.|.+ +|.+++|.++.+ ...+.+...-.+..+.+|++.||++-|+ ++ .+.
T Consensus 25 W~~~~~~lC~fGF~~e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~-----vL-~l~ 98 (511)
T TIGR00806 25 WRVLVLYLCFYGFMAQFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKP-----VL-VLQ 98 (511)
T ss_pred hhHHHHHHHHHHHHHHhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchH-----HH-HHH
Confidence 4444444444443333333433 455577888766 3889999999999999999999996642 22 222
Q ss_pred HHHHHHHHHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhhhhHhhhhcCcCCCCCCcc
Q 012908 327 QFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSMPRVDEPLKC 405 (453)
Q Consensus 327 ~~~~~~~~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~ig~~l~~~~~~~~~~~C 405 (453)
.+.-.+..+++.. .....+.+.=++.|++-|+.+ .+-..++..|-.|++++-.++...|..+|..+....... ..=
T Consensus 99 ~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql--l~s 175 (511)
T TIGR00806 99 ALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL--LVT 175 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHh
Confidence 2222222222222 233467788899999999999 999999999999999999999754444444332210000 001
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 012908 406 EGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVY 440 (453)
Q Consensus 406 ~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r~r~~y 440 (453)
.|-.-|+.-.+|..+...+++++++.|-...|..|
T Consensus 176 ~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~ 210 (511)
T TIGR00806 176 LGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLF 210 (511)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhh
Confidence 14567999999999999999999999886666655
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0044 Score=63.57 Aligned_cols=137 Identities=17% Similarity=0.068 Sum_probs=83.8
Q ss_pred eecchHHHHHHhCCChhhH--HHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHh-ccCchhHH
Q 012908 270 VIDNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGWPGAMY 346 (453)
Q Consensus 270 ~i~n~~~i~~alg~~~~~~--~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~-~~~~~~l~ 346 (453)
++.=+..+.+++|.+..+. .+++..+...++-..+|.++||.+|+.. .+... .....+..+ ++.. ..+...++
T Consensus 23 ~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~-~~~~~-~~~~~l~~~--~~~~~~~~~~~l~ 98 (382)
T TIGR00902 23 FLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIII-ALRLL-ALASAIFAA--AFSAGAHNAWLLF 98 (382)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH-HHHHH-HHHHHHHHH--HHHHhhhhHHHHH
Confidence 3444778888999987654 7888889999999999999999865321 11111 111111111 1111 23344566
Q ss_pred HHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcC-cCCCCCCcccCCcccHHHHHHHHHH
Q 012908 347 VGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSM-PRVDEPLKCEGSICYFLTSMIMSGL 421 (453)
Q Consensus 347 ~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~ 421 (453)
+..++.|..++...+..-+++.+. .|+.++.||.+. +|..+|+.+.+. .+.. -+|..|.+...+
T Consensus 99 ~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~---------g~~~~f~~~~~~ 167 (382)
T TIGR00902 99 IAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMF---------DEQNILAILTAG 167 (382)
T ss_pred HHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHc---------ChhHHHHHHHHH
Confidence 677778888888888877777654 467788888864 555555555443 1111 266677666544
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0075 Score=63.03 Aligned_cols=149 Identities=15% Similarity=0.161 Sum_probs=92.8
Q ss_pred CHHHHhhcHHHHHHHHHHHhhccccceeecchHHH-HHHhCC-ChhhHHHHHHHHhhhhccccccchhhhhhhccCCchh
Q 012908 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQM-SQSLGY-DNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (453)
Q Consensus 243 t~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i-~~alg~-~~~~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~ 320 (453)
+.++.+|+++++..++..+ ..+......++...+ .+++|. +.... -.+.+ .+.+.-+..=.+++|+.+|++..+
T Consensus 199 ~~~~llk~~~~~~Fll~~~-l~~~~~~~~~~f~~~yl~~~gg~~~~~~-g~~~~-l~~~aEi~~f~~~~~~~~r~g~~~- 274 (400)
T PF03825_consen 199 DALKLLKNPRFLVFLLAAF-LIGISHAAYYTFFSIYLQELGGYSGSTI-GILWA-LGVVAEIPFFFFSGRFLKRFGIKW- 274 (400)
T ss_pred HHHHHhcCccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcccchhhHH-HHHHH-HHHHHHHHHHHHHHHHHHhcCHHH-
Confidence 4568999999987555554 445555556666665 577873 33321 11222 233456677778889988887533
Q ss_pred HHHHHHHHHHHHHHHHHhcc-CchhHHHH-----HHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH-----hhhhhh
Q 012908 321 VAMAVAQFVMAIGHIFLGMG-WPGAMYVG-----TLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL-----TLANPA 389 (453)
Q Consensus 321 ~~l~~~~~~~~~~~ll~~~~-~~~~l~~~-----~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~-----~la~~i 389 (453)
.+.++.+..++=..+++.. ++...... -.+=|++||..+......+.+....+.-++-.|+. .++..+
T Consensus 275 -ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~i 353 (400)
T PF03825_consen 275 -LLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAI 353 (400)
T ss_pred -HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHH
Confidence 4455555566655555543 33222222 23469999999999999999999866666666653 255555
Q ss_pred HhhhhcC
Q 012908 390 GSIFTSM 396 (453)
Q Consensus 390 g~~l~~~ 396 (453)
|+++-+.
T Consensus 354 G~~igG~ 360 (400)
T PF03825_consen 354 GSLIGGW 360 (400)
T ss_pred HHHHHHH
Confidence 5555443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0075 Score=62.21 Aligned_cols=151 Identities=15% Similarity=0.101 Sum_probs=91.6
Q ss_pred hccccceeecchHH-HHHHhCCChhhH-HHHHHHHhhhhccccccchhhhh-----hhccCCchhHHHHHHHHHHHHHHH
Q 012908 263 GSGSGLTVIDNLGQ-MSQSLGYDNTHI-FVSMISIWNFLGRVGGGYFSEII-----VRDYAYPRPVAMAVAQFVMAIGHI 335 (453)
Q Consensus 263 ~~g~gl~~i~n~~~-i~~alg~~~~~~-~Vsl~si~n~~GRl~~G~lsD~l-----~~~~~~~r~~~l~~~~~~~~~~~l 335 (453)
..|...+++...-| +.+++|++..++ .++++..- .+.+.++|.++||+ +|| |+| +.++.++++++..
T Consensus 10 ~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~g~~~Dr~~~~~~g~r----r~~-l~~~~~~~~l~~~ 83 (402)
T PRK11902 10 ASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA-YIFKFLWAPLMDRYTPPLLGRR----RGW-LLLTQVGLAASIA 83 (402)
T ss_pred HHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCcc----hhH-HHHHHHHHHHHHH
Confidence 34445554444433 557889988765 33443333 58899999999999 442 223 3444555544444
Q ss_pred HHhccC--c--hhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhhhhHhhhhcC-----cCCCCCCccc
Q 012908 336 FLGMGW--P--GAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSM-----PRVDEPLKCE 406 (453)
Q Consensus 336 l~~~~~--~--~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~ig~~l~~~-----~~~~~~~~C~ 406 (453)
++...+ . ..+++..++.++..........+++.|++-.|+-++.-++...+..+|..+.+. .+.
T Consensus 84 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~------- 156 (402)
T PRK11902 84 AMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADR------- 156 (402)
T ss_pred HHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc-------
Confidence 433322 1 234555566788888888899999999998777877777765444444333221 111
Q ss_pred CCcccHHHHHHHHHHHHHHHH
Q 012908 407 GSICYFLTSMIMSGLCIVAVI 427 (453)
Q Consensus 407 G~~Cy~~~f~i~~~~~~~~~~ 427 (453)
..-+|..|.+.+.+.++..+
T Consensus 157 -~~gw~~~f~i~a~~~l~~~l 176 (402)
T PRK11902 157 -VLGWGNTYLLMAGLMLAGAL 176 (402)
T ss_pred -ccCHHHHHHHHHHHHHHHHH
Confidence 01388899888877665444
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0082 Score=64.18 Aligned_cols=179 Identities=15% Similarity=0.133 Sum_probs=101.2
Q ss_pred HHHHHHHHhhccccce---eecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHH
Q 012908 254 WLIFFSLLLGSGSGLT---VIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQF 328 (453)
Q Consensus 254 Wll~~~~~~~~g~gl~---~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~ 328 (453)
|-+.....+..|.-.. ...++.++.+.+|.+... ....+-.+...+...+.|++|||...|++-.|++.+. ..+
T Consensus 4 ~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~-g~~ 82 (477)
T TIGR01301 4 RKLLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAA-GAA 82 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHH-HHH
Confidence 3344444444444333 345677788889997653 3667788889999999999999633233323555433 223
Q ss_pred HHHHHHHHHhccCc------------------hhHHHHHHHHHhhhhhhcchhHHHHHHhhcccch--hhhhhhH----h
Q 012908 329 VMAIGHIFLGMGWP------------------GAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKF--GALYNFL----T 384 (453)
Q Consensus 329 ~~~~~~ll~~~~~~------------------~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~f--g~~yg~~----~ 384 (453)
.++++.+++..... ....++..+..+++....+-+.++++|.+..++- +.-+++. .
T Consensus 83 ~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~ 162 (477)
T TIGR01301 83 LVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMA 162 (477)
T ss_pred HHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHH
Confidence 33333333322110 1122233445568888888889999999997643 3445543 3
Q ss_pred hhhhhHhhhhcC---c---CCCCCCcc-cCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 012908 385 LANPAGSIFTSM---P---RVDEPLKC-EGSICYFLTSMIMSGLCIVAVILSMILV 433 (453)
Q Consensus 385 la~~ig~~l~~~---~---~~~~~~~C-~G~~Cy~~~f~i~~~~~~~~~~l~l~l~ 433 (453)
+|..+|..+-+. . .-.....| .-..-++..|++.+.+.+++.+++++..
T Consensus 163 lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v 218 (477)
T TIGR01301 163 IGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAV 218 (477)
T ss_pred HHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeee
Confidence 444444332111 0 00111122 2223589999998888888777776654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.012 Score=62.31 Aligned_cols=147 Identities=10% Similarity=0.017 Sum_probs=77.3
Q ss_pred HHHHhhcHHHHHHHHHHHhhccccceeecchHHHHHH-hCCChh-hHHHHHHHHhhhhccccccchhhhhhhccCCchhH
Q 012908 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT-HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 321 (453)
Q Consensus 244 ~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~a-lg~~~~-~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~ 321 (453)
+++.++++.|+.+..+.++......+.....-...+- +|.++. ..+.....+.+.+|-++++.++||++||+. +
T Consensus 221 l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~----~ 296 (460)
T PRK11462 221 LRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTI----F 296 (460)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH----H
Confidence 3456778888877655433322111111111222222 232222 235566778888898999999999877522 1
Q ss_pred HHHHHHHHHHHHHHHHhccC--chhHHHHHHHHHhhhhhhcchhHHHHHHh-------hcccchhhhhhhH--------h
Q 012908 322 AMAVAQFVMAIGHIFLGMGW--PGAMYVGTLLIGLGYGAHWAIVPAAASEL-------FGLKKFGALYNFL--------T 384 (453)
Q Consensus 322 ~l~~~~~~~~~~~ll~~~~~--~~~l~~~~~liG~~yG~~~~~~p~i~s~~-------FG~k~fg~~yg~~--------~ 384 (453)
. .........+.+++..+. ...+++..++.|++.|....+..++++|. .|.|+=|..|+.. .
T Consensus 297 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~a 375 (460)
T PRK11462 297 W-WTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLA 375 (460)
T ss_pred H-HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 1 111111121222222222 22345556677887777666655666654 6778877777763 2
Q ss_pred hhhhhHhhhhc
Q 012908 385 LANPAGSIFTS 395 (453)
Q Consensus 385 la~~ig~~l~~ 395 (453)
+++.+++.+++
T Consensus 376 lg~~i~g~iL~ 386 (460)
T PRK11462 376 FGGALIGWMLA 386 (460)
T ss_pred HHHHHHHHHHH
Confidence 45555555554
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.01 Score=60.74 Aligned_cols=137 Identities=16% Similarity=0.045 Sum_probs=82.7
Q ss_pred cchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHH
Q 012908 272 DNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVG 348 (453)
Q Consensus 272 ~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~-~~~~~l~~~ 348 (453)
.-+..+.+++|.+..+ ..+++.++...++.+.+|.++||++|+....|... . ...+..+ +.... .+...+++.
T Consensus 25 p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~-~-~~~~~~~--~~~~~~~~~~~l~i~ 100 (382)
T PRK11128 25 PFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLA-L-LTLLFAV--AFWFGAHSFWLLFVA 100 (382)
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHH-H-HHHHHHH--HHHHhcccHHHHHHH
Confidence 3445677888887654 48889999999999999999999988433223221 1 1111111 11122 233345567
Q ss_pred HHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH----hhhhhhHhhhhcC-cCCCCCCcccCCcccHHHHHHHHHHHH
Q 012908 349 TLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL----TLANPAGSIFTSM-PRVDEPLKCEGSICYFLTSMIMSGLCI 423 (453)
Q Consensus 349 ~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~----~la~~ig~~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~ 423 (453)
-.+.|++.++.++...+++.++ .|+.++.+|.. .++..+|+.+.+. .+.. -+|.+|++.+...+
T Consensus 101 ~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~---------g~~~~f~~~~~~~~ 169 (382)
T PRK11128 101 IGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWF---------GEQAILWILTAGVA 169 (382)
T ss_pred HHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHc---------ChhHHHHHHHHHHH
Confidence 7778999998888877777766 34444444443 4555555555443 1111 27888877664433
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.095 Score=54.43 Aligned_cols=147 Identities=14% Similarity=0.151 Sum_probs=104.0
Q ss_pred CHHHHhhcHHHHHHHHHHHhhccccceeecchHHHHHH-hCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCch
Q 012908 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 319 (453)
Q Consensus 243 t~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~a-lg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r 319 (453)
+..++++++.+|+--+..||=.|+-.++=+.+.+.+.+ .|.++.+ .++|.+-++-.+||..+-++-.|+.. .|
T Consensus 228 ~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~----~k 303 (422)
T COG0738 228 GLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKP----EK 303 (422)
T ss_pred hHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH----HH
Confidence 67889999999999999999999999999999999988 5666543 49999999999999655555545532 33
Q ss_pred hHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh---hhhhhHhhhhcC
Q 012908 320 PVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT---LANPAGSIFTSM 396 (453)
Q Consensus 320 ~~~l~~~~~~~~~~~ll~~~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~---la~~ig~~l~~~ 396 (453)
... +.+.+...+ ++.....+......+..++|+-.+.+|++.-++..+..| +|=+.-=+++. .|.++-|++.+.
T Consensus 304 ~La-f~a~~~ill-~~~~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~l~maivGGAiiP~l~G~ 380 (422)
T COG0738 304 YLA-FYALIAILL-LLAVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGLLVMAIVGGAIIPPLQGV 380 (422)
T ss_pred HHH-HHHHHHHHH-HHHHHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccccceeeeeheecchHHHHHHHH
Confidence 222 222121111 111112222344458889999999999999999999999 66655555553 566777777776
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0078 Score=63.39 Aligned_cols=135 Identities=16% Similarity=0.154 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhhccccceeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHH
Q 012908 252 DFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFV 329 (453)
Q Consensus 252 ~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~ 329 (453)
.|+++++.++.-...-.....-..++-+++|.++.+ ...+.+.+...++-+..|.+.||+++|+ .+.+..++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~------~l~~g~~~ 100 (438)
T PRK10133 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA------GIITGLFL 100 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH------HHHHHHHH
Confidence 566666655544333333333445555577887654 3788999999999999999999998853 33445555
Q ss_pred HHHHHHHH---h-ccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhh-h----hhhHhhhhhhHhhh
Q 012908 330 MAIGHIFL---G-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGA-L----YNFLTLANPAGSIF 393 (453)
Q Consensus 330 ~~~~~ll~---~-~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~-~----yg~~~la~~ig~~l 393 (453)
.+++.+++ . ..+...+.++-++.|++.|..+.....+++|.. .++-+. . .....++..+|+.+
T Consensus 101 ~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~-~~~~~~~~~s~~~~~~~~G~~~g~~~ 172 (438)
T PRK10133 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLG-PESSGHFRLNLAQTFNSFGAIIAVVF 172 (438)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC-ChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665543 2 223345777889999999999999999998864 444443 2 22223555555544
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.015 Score=61.00 Aligned_cols=144 Identities=11% Similarity=0.071 Sum_probs=81.4
Q ss_pred HHHHhhcHHHHHHHHHHHhhccccceeecchHHHHHH-hCCChhhH-HHHH-HHHhhhhccccccchhhhhhhccCCchh
Q 012908 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTHI-FVSM-ISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (453)
Q Consensus 244 ~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~a-lg~~~~~~-~Vsl-~si~n~~GRl~~G~lsD~l~~~~~~~r~ 320 (453)
.++.++++.|+.+.++.++....-...........+. +|.++... .... ..+...++..++|.+.||+++| +
T Consensus 221 ~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~----~- 295 (448)
T PRK09848 221 LQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK----N- 295 (448)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH----H-
Confidence 5678899999988877666543332222222223332 34433221 2112 2344566777778788877653 2
Q ss_pred HHHHHHHHHHHHHHHHHhccC---chhHHHHHHHHHhhhhhhcchhHHHHHHhh-------cccchhhhhhhHh----hh
Q 012908 321 VAMAVAQFVMAIGHIFLGMGW---PGAMYVGTLLIGLGYGAHWAIVPAAASELF-------GLKKFGALYNFLT----LA 386 (453)
Q Consensus 321 ~~l~~~~~~~~~~~ll~~~~~---~~~l~~~~~liG~~yG~~~~~~p~i~s~~F-------G~k~fg~~yg~~~----la 386 (453)
.+.+..++.+++.+++...+ ...++++.++.|++.|..+....++++|.= |.|+-|..+|+.. +|
T Consensus 296 -~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg 374 (448)
T PRK09848 296 -TFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCG 374 (448)
T ss_pred -HHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHH
Confidence 22333444445544433322 223455677889999999988888877653 5566677777753 44
Q ss_pred hhhHhhh
Q 012908 387 NPAGSIF 393 (453)
Q Consensus 387 ~~ig~~l 393 (453)
..+|+.+
T Consensus 375 ~aig~~i 381 (448)
T PRK09848 375 QAIGGSI 381 (448)
T ss_pred HHHHHHH
Confidence 4554443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0061 Score=63.43 Aligned_cols=175 Identities=15% Similarity=0.170 Sum_probs=112.6
Q ss_pred CHHHHhhcHHHHHHHHHHHhhccccceeecchHHHH-H-HhCCChhhH--HHHHHHHhhhhccccccchhhhhhhccCCc
Q 012908 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMS-Q-SLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYP 318 (453)
Q Consensus 243 t~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~-~-alg~~~~~~--~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~ 318 (453)
|++|..+.++.-+-.++.++ ---|+..+..++-+. . ++|.++.+. +-...++..++|-++.|++.||++-|.-
T Consensus 244 t~k~i~~~~~i~~FLiA~~~-~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~v-- 320 (438)
T COG2270 244 TFKEIRGRKNLVLFLIARFF-YIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPV-- 320 (438)
T ss_pred HHHHHhcccchHHHHHHHHH-HHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcee--
Confidence 45555544443322222222 222333344444443 3 578877654 5556788889999999999999977522
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhh
Q 012908 319 RPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFT 394 (453)
Q Consensus 319 r~~~l~~~~~~~~~~~ll~~~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~ 394 (453)
++....+++.+....+....+..+++...++|+..|...+.-=+..++..-.++-|+-||+-. .++..||+++
T Consensus 321 ---l~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv 397 (438)
T COG2270 321 ---LMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLV 397 (438)
T ss_pred ---ehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHH
Confidence 222222223333333334446678889999999999999999999999999999999999865 5678888888
Q ss_pred cCcCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHH
Q 012908 395 SMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSM 430 (453)
Q Consensus 395 ~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l 430 (453)
+.... -++.-|..+.....+..+|.++-+
T Consensus 398 ~v~t~-------iTg~~r~g~~~i~vll~iGl~~L~ 426 (438)
T COG2270 398 AVITQ-------ITGSSRAGVLSIIVLLLIGLLLLL 426 (438)
T ss_pred HHHHH-------HhcchhhHHHHHHHHHHhhHhhEE
Confidence 86211 133467777777777666665543
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.025 Score=57.95 Aligned_cols=171 Identities=13% Similarity=0.103 Sum_probs=118.0
Q ss_pred HHHHhhcHHHHHHHHHHHhhccccceeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhH
Q 012908 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 321 (453)
Q Consensus 244 ~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~ 321 (453)
-...+|++.=|.+-+-|.+.+..--.++.=+.+|..+.|+++.+ ..+|+..+.....-+..-.+.+|- +-.|++
T Consensus 201 ~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~----~n~r~~ 276 (395)
T COG2807 201 VRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRS----KNQRPL 276 (395)
T ss_pred ccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHh----cccchH
Confidence 34578999999999988888888888888999999999999765 489999998888888888777763 224444
Q ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchh-----hhhhhHhhhhhhHhhhhcC
Q 012908 322 AMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFG-----ALYNFLTLANPAGSIFTSM 396 (453)
Q Consensus 322 ~l~~~~~~~~~~~ll~~~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg-----~~yg~~~la~~ig~~l~~~ 396 (453)
. ....+++.+|..-+...+....++-.++.|++-|+.|++.=.++.+..--.+-. .-.|+-++=..+||++++.
T Consensus 277 ~-~~~~~~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~ 355 (395)
T COG2807 277 V-VLALLLMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGF 355 (395)
T ss_pred H-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhH
Confidence 4 344444555554443333333333369999999999999888887776433322 1222334556788888886
Q ss_pred -cCCCCCCcccCCcccHHHHHHHHHHHHHHHH
Q 012908 397 -PRVDEPLKCEGSICYFLTSMIMSGLCIVAVI 427 (453)
Q Consensus 397 -~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~ 427 (453)
+|. ++.|+.++...+...++..+
T Consensus 356 lhDa--------~gsw~~~~~~l~~~~i~m~i 379 (395)
T COG2807 356 LHDA--------TGSWSAPLVLLALATLLMLI 379 (395)
T ss_pred HHHh--------cCChHHHHHHHHHHHHHHHH
Confidence 444 45688888777655544333
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.025 Score=58.26 Aligned_cols=166 Identities=10% Similarity=0.038 Sum_probs=83.2
Q ss_pred cHHHHHHHHHHHhhccccceeecchHH-HHHHhCCChhhH--HHHHHHH-hhhhccccccchhhhhhhccCCchhHHHHH
Q 012908 250 KADFWLIFFSLLLGSGSGLTVIDNLGQ-MSQSLGYDNTHI--FVSMISI-WNFLGRVGGGYFSEIIVRDYAYPRPVAMAV 325 (453)
Q Consensus 250 s~~FWll~~~~~~~~g~gl~~i~n~~~-i~~alg~~~~~~--~Vsl~si-~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~ 325 (453)
+..-|.+++..++..-..-+...-+.. +.+++|.+..+. .++...+ ...++.+.+|. +||+++|+.. +..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~-----~~~ 87 (393)
T PRK15011 14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSL-----IVF 87 (393)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHH-----HHH
Confidence 455566666655443332333343444 456778876643 4444444 44556666676 9999885322 222
Q ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHhhhhhhcchhHHHHHHhhcccch-hhhh-hhH----hhhhhhHhhhhcC-c
Q 012908 326 AQFVMAIGHIFLGMGW-PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKF-GALY-NFL----TLANPAGSIFTSM-P 397 (453)
Q Consensus 326 ~~~~~~~~~ll~~~~~-~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~f-g~~y-g~~----~la~~ig~~l~~~-~ 397 (453)
..++..++..++...+ ...+.+...+.|...+........++.|....++- ...| ++. .++..+|+.+.+. .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~ 167 (393)
T PRK15011 88 CCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALA 167 (393)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 2233333333333322 22333333444444455666666777776643321 1122 332 3445555544432 1
Q ss_pred CCCCCCcccCCcccHHHHHHHHHHHHHHHHHHH
Q 012908 398 RVDEPLKCEGSICYFLTSMIMSGLCIVAVILSM 430 (453)
Q Consensus 398 ~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l 430 (453)
+. -.+|.+|++.+.++++..+...
T Consensus 168 ~~---------~gw~~~f~~~~~~~~~~~~~~~ 191 (393)
T PRK15011 168 MG---------FSFTVMYLSAAVAFIVCGVMVW 191 (393)
T ss_pred Hh---------cChHHHHHHHHHHHHHHHHHHH
Confidence 11 1389999988877766655443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.016 Score=60.02 Aligned_cols=146 Identities=13% Similarity=0.122 Sum_probs=79.2
Q ss_pred HhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHH-HhccCc------hhHHHHHH
Q 012908 280 SLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIF-LGMGWP------GAMYVGTL 350 (453)
Q Consensus 280 alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll-~~~~~~------~~l~~~~~ 350 (453)
.+|.++.. ...++..++.++.....|+++||..+|++-.|||.+..... .+++.++ +..+.. ..+.+..+
T Consensus 29 ~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (437)
T TIGR00792 29 VLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIP-FSIVLVLLFTTPDFSATGKLVYAYITYI 107 (437)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHH-HHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 46776543 47888889999999999999999877665556776544333 3333333 222211 12334556
Q ss_pred HHHhhhhhhcchhHHHHHHhhc-ccchhhhhhhHhh----hhhhHhh----hhcCcCCCCCCcccCCcccHHHHHHHHHH
Q 012908 351 LIGLGYGAHWAIVPAAASELFG-LKKFGALYNFLTL----ANPAGSI----FTSMPRVDEPLKCEGSICYFLTSMIMSGL 421 (453)
Q Consensus 351 liG~~yG~~~~~~p~i~s~~FG-~k~fg~~yg~~~l----a~~ig~~----l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~ 421 (453)
+.+.+++....-+-++.+|... .++-++..++-.. |..+++. +.+.....+ ....|+..+.+.+++
T Consensus 108 ~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~-----~~~g~~~~~~i~~~l 182 (437)
T TIGR00792 108 LLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGD-----DKFGWFMFALVLALI 182 (437)
T ss_pred HHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-----ccccHHHHHHHHHHH
Confidence 6677777654444455555542 2334444343222 2222211 221111000 123588888888877
Q ss_pred HHHHHHHHHH
Q 012908 422 CIVAVILSMI 431 (453)
Q Consensus 422 ~~~~~~l~l~ 431 (453)
+++..++...
T Consensus 183 ~~~~~~~~~~ 192 (437)
T TIGR00792 183 GVVSLIICFF 192 (437)
T ss_pred HHHHHHHHHc
Confidence 7666554433
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.02 Score=59.82 Aligned_cols=134 Identities=17% Similarity=0.155 Sum_probs=75.8
Q ss_pred HHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHhh
Q 012908 279 QSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLG 355 (453)
Q Consensus 279 ~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~-~~~~~l~~~~~liG~~ 355 (453)
+++|.+..+ .+.++..+...++.+.+|.++||+++++ .. +.+..++..++..+... .+...+++..++.|++
T Consensus 31 ~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (418)
T TIGR00889 31 KTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQ----KV-YAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLA 105 (418)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH----HH-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 457887654 3889999999999999999999987632 12 22223333333322222 3333455566677887
Q ss_pred hhhhcchhHHHHHHhhc------ccchh--hhhhhHhhhhhhHhhhhcCcCCCCCCcccCCcccHHHHHHHHHHHHHHHH
Q 012908 356 YGAHWAIVPAAASELFG------LKKFG--ALYNFLTLANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVI 427 (453)
Q Consensus 356 yG~~~~~~p~i~s~~FG------~k~fg--~~yg~~~la~~ig~~l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~ 427 (453)
++...++.-++.-++.. .++|+ +++| .+|..+|+.+.+.... .-.+.+|++.+++.++.++
T Consensus 106 ~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G--~lG~~ig~~l~g~l~~---------~~~~~~f~~~~~~~~~~~~ 174 (418)
T TIGR00889 106 YMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG--TIGFIAAMWAVSLLDI---------ELSNIQLYITAGSSALLGV 174 (418)
T ss_pred HccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh--hHHHHHHHHHHHHhcc---------cchhHHHHHHHHHHHHHHH
Confidence 77666655444322221 12233 3444 4566666666553211 1124567777766665554
Q ss_pred H
Q 012908 428 L 428 (453)
Q Consensus 428 l 428 (453)
+
T Consensus 175 ~ 175 (418)
T TIGR00889 175 F 175 (418)
T ss_pred H
Confidence 4
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.015 Score=60.98 Aligned_cols=83 Identities=13% Similarity=0.222 Sum_probs=55.9
Q ss_pred HhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhcc--C-c--h--hHHHHHH
Q 012908 280 SLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMG--W-P--G--AMYVGTL 350 (453)
Q Consensus 280 alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~~--~-~--~--~l~~~~~ 350 (453)
.+|.+... ...++..++.++..+.+|+++||.++|++..|+|.+.....++..+.+++... . . . .+.+...
T Consensus 38 ~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (448)
T PRK09848 38 VAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYM 117 (448)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHH
Confidence 35666543 47788999999999999999999988777778887665555544444444322 1 1 1 1334556
Q ss_pred HHHhhhhhhcch
Q 012908 351 LIGLGYGAHWAI 362 (453)
Q Consensus 351 liG~~yG~~~~~ 362 (453)
+.+++|+....-
T Consensus 118 ~~~~~~~~~~~~ 129 (448)
T PRK09848 118 GLGLCYSLVNIP 129 (448)
T ss_pred HHHHHHHHhccc
Confidence 778888877643
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.014 Score=63.10 Aligned_cols=137 Identities=18% Similarity=0.258 Sum_probs=88.5
Q ss_pred HHHhhcHHHHHHHHHHHhhccccceeecchHHHHHHhCC-------ChhhHHHHHHHHhhhh----ccccccchhhhhhh
Q 012908 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGY-------DNTHIFVSMISIWNFL----GRVGGGYFSEIIVR 313 (453)
Q Consensus 245 ~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~-------~~~~~~Vsl~si~n~~----GRl~~G~lsD~l~~ 313 (453)
+.-+|+++|..+|+.-.+ +|+|...+..+. +.....|++...+..+ --+.+|.+.||+.|
T Consensus 4 ~aplr~~~Fr~lw~a~~i---------S~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~dr 74 (524)
T PF05977_consen 4 FAPLRNRNFRRLWIAQLI---------SNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDR 74 (524)
T ss_pred cccccCchHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 456899999999998765 455554443321 2233466666555544 44678999999977
Q ss_pred ccCCchhHHHHHHHHHHHHHHHH---H-h--ccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH----
Q 012908 314 DYAYPRPVAMAVAQFVMAIGHIF---L-G--MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL---- 383 (453)
Q Consensus 314 ~~~~~r~~~l~~~~~~~~~~~ll---~-~--~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~---- 383 (453)
|+ ++..+.++.++..++ + . ..++..+++.++++|.+........-+++.|+...++..+--++.
T Consensus 75 rr------ili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~ 148 (524)
T PF05977_consen 75 RR------ILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISF 148 (524)
T ss_pred hH------HHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHH
Confidence 53 233344433322211 1 1 223456888999999999999999999999999987765443332
Q ss_pred ----hhhhhhHhhhhcC
Q 012908 384 ----TLANPAGSIFTSM 396 (453)
Q Consensus 384 ----~la~~ig~~l~~~ 396 (453)
.+||.+|+.+++.
T Consensus 149 niar~iGPalgG~Lva~ 165 (524)
T PF05977_consen 149 NIARIIGPALGGILVAF 165 (524)
T ss_pred HHHHhccchHHHHHHHH
Confidence 3667777777664
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.013 Score=62.98 Aligned_cols=136 Identities=13% Similarity=0.150 Sum_probs=95.8
Q ss_pred HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhhhhcchhHHHH
Q 012908 288 IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAA 367 (453)
Q Consensus 288 ~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~~~~~~l~~~~~liG~~yG~~~~~~p~i~ 367 (453)
...+++.+.-.+|.+.+|++.||+.- +| +......+-.+++.+-....+...+...=++.|+.-+..|....+++
T Consensus 85 ~~~t~F~v~Yii~~~p~~~L~~r~~l----s~-~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~l 159 (495)
T KOG2533|consen 85 VLDTVFYVGYIIGQFPSGLLGDRFPL----SK-GLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAIL 159 (495)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHhCCh----HH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHH
Confidence 48889999999999999999998841 12 22222222222222222234444577778899999999999999999
Q ss_pred HHhhcccchhhhhhhHh----hhhhhHhhhhcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 012908 368 SELFGLKKFGALYNFLT----LANPAGSIFTSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 431 (453)
Q Consensus 368 s~~FG~k~fg~~yg~~~----la~~ig~~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~ 431 (453)
+.+|+.++.|+..|+.+ +|+.+|+++... ...++ =.+...||..|++.++++++..++..+
T Consensus 160 g~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~---~~~~~gW~~~FiI~G~i~~~~gi~~f~ 225 (495)
T KOG2533|consen 160 GNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNG---SGGLAGWRWLFIIEGVITLVLGIVVFF 225 (495)
T ss_pred HhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcC---CCCcCCceeehhHHHHHHHHHHheEEE
Confidence 99999999999999987 666666666543 11110 124668999999999888776665543
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.32 Score=53.42 Aligned_cols=90 Identities=17% Similarity=0.127 Sum_probs=46.8
Q ss_pred HHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHH--HHHHHh-ccCchhHHHHHHHHHhhhhhhcchhHH
Q 012908 289 FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAI--GHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPA 365 (453)
Q Consensus 289 ~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~--~~ll~~-~~~~~~l~~~~~liG~~yG~~~~~~p~ 365 (453)
.....+++.++|-++.|.+.-++ |+. | |.+.+..+++.+ |.+... .++....+.-.++.|++.|..-...-.
T Consensus 354 ~s~~~~fg~~~g~~i~g~l~~~i-r~~---K-w~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~ 428 (599)
T PF06609_consen 354 ISSPVGFGSCAGAVILGLLFSKI-RHI---K-WQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIV 428 (599)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHc-cch---h-HHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHH
Confidence 44556777778888888877444 333 3 333344444443 333222 223444556677888877764443333
Q ss_pred HHHHhhcccchhhhhhhH
Q 012908 366 AASELFGLKKFGALYNFL 383 (453)
Q Consensus 366 i~s~~FG~k~fg~~yg~~ 383 (453)
++.-.--.++.|+.-|+.
T Consensus 429 ~~ql~~p~~~ig~a~gL~ 446 (599)
T PF06609_consen 429 IAQLIVPDEDIGTATGLT 446 (599)
T ss_pred eeEeeeCchHHHHHHHHH
Confidence 332222334566655554
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.016 Score=64.31 Aligned_cols=145 Identities=23% Similarity=0.377 Sum_probs=95.2
Q ss_pred HhCCChh--hHHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhccC-c--------hhHHHH
Q 012908 280 SLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGW-P--------GAMYVG 348 (453)
Q Consensus 280 alg~~~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~~~-~--------~~l~~~ 348 (453)
.+|+++. ...+..+.-...+-.++.|++.|++..++ +.+.+..++..+|+.+++... + ..++++
T Consensus 17 ~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~-----~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~g 91 (654)
T TIGR00926 17 FLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKF-----KTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLG 91 (654)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHH
Confidence 3666644 33666777777778888999999775432 334556666777877664421 1 136678
Q ss_pred HHHHHhhhhhhcchhHHHHHHhhcccc---hhhhhhhHh----hhhhhHhhhhcCcCCCCCCcccC-CcccHHHHHHHHH
Q 012908 349 TLLIGLGYGAHWAIVPAAASELFGLKK---FGALYNFLT----LANPAGSIFTSMPRVDEPLKCEG-SICYFLTSMIMSG 420 (453)
Q Consensus 349 ~~liG~~yG~~~~~~p~i~s~~FG~k~---fg~~yg~~~----la~~ig~~l~~~~~~~~~~~C~G-~~Cy~~~f~i~~~ 420 (453)
-++++++.|+.=+...+...|.|..++ +-.-|.+.+ +++.+++.+..... +...|.| ..||..+|.+.++
T Consensus 92 LaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~--~~~~~fg~~~~~~~aF~i~~i 169 (654)
T TIGR00926 92 LALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILR--GDVGCFGCQDCYPLAFGVPAI 169 (654)
T ss_pred HHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhcccccCcchHHHHHHHHH
Confidence 899999999999999999999997543 444555544 44444444433211 1123544 4589999999988
Q ss_pred HHHHHHHHHHH
Q 012908 421 LCIVAVILSMI 431 (453)
Q Consensus 421 ~~~~~~~l~l~ 431 (453)
+.++++++-+.
T Consensus 170 ~m~ia~lvf~~ 180 (654)
T TIGR00926 170 LMILALIVFMA 180 (654)
T ss_pred HHHHHHHHHHH
Confidence 88887766544
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=96.27 E-value=2.5e-05 Score=81.45 Aligned_cols=183 Identities=16% Similarity=0.218 Sum_probs=95.8
Q ss_pred CCHHHHhhcHH----HHHHHHHHHhhccccceeecc-hHHHHHHhCCChhhHHHHHHHHhhhhccccccchhhhhhhccC
Q 012908 242 FTLTQALIKAD----FWLIFFSLLLGSGSGLTVIDN-LGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYA 316 (453)
Q Consensus 242 ~t~~~~l~s~~----FWll~~~~~~~~g~gl~~i~n-~~~i~~alg~~~~~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~ 316 (453)
.++++.++++. +........+....|...+.+ ...+.+..|.++....-.+.++.+.++-+++.++.||++||+-
T Consensus 239 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~ 318 (451)
T PF00083_consen 239 ASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKL 318 (451)
T ss_pred eeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34455555533 222222333333444333333 3455566666655334456778888999999999999998633
Q ss_pred CchhHHHHHHHHHHHHHHHHH------hccCc---h-hHHHHHHHHHhhhhhhcchhH-HHHHHhhcccchhhhhhhHhh
Q 012908 317 YPRPVAMAVAQFVMAIGHIFL------GMGWP---G-AMYVGTLLIGLGYGAHWAIVP-AAASELFGLKKFGALYNFLTL 385 (453)
Q Consensus 317 ~~r~~~l~~~~~~~~~~~ll~------~~~~~---~-~l~~~~~liG~~yG~~~~~~p-~i~s~~FG~k~fg~~yg~~~l 385 (453)
. .....++++..+.+ ....+ . .......+....++..++..+ .+++|.|..+.=++-.|+...
T Consensus 319 ~------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~ 392 (451)
T PF00083_consen 319 L------IIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYA 392 (451)
T ss_pred c------ccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccc
Confidence 2 11122222211111 11111 2 222233344456666666666 777999999887777777653
Q ss_pred ----hhhhHhhhhcCcCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012908 386 ----ANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 438 (453)
Q Consensus 386 ----a~~ig~~l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r~r~ 438 (453)
+..++++++...... .+ ....|.+.+++++++.+....+.-.||+
T Consensus 393 ~~~i~~~i~~~~~~~~~~~-----~~---~~~~~~i~~~~~~i~~i~~~~~lpET~g 441 (451)
T PF00083_consen 393 VGRIGGFIIPFLFPYLFNN-----LG---GWGVFLIFAGVCLIAIIFVYFFLPETKG 441 (451)
T ss_pred ccccccccccccccccccc-----cc---ccccchhhHHHHHHHHhheeEEEeeCCC
Confidence 344444443321110 01 2455667777777766665554444543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.017 Score=61.89 Aligned_cols=125 Identities=13% Similarity=0.008 Sum_probs=87.7
Q ss_pred HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHH
Q 012908 288 IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAA 366 (453)
Q Consensus 288 ~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i 366 (453)
...+++-++..+|-+++|.+||++|||. .+.++.++..++.+..+. .+-..+.+.=.+.|++.++.+.+...+
T Consensus 122 ~~~s~~~~G~~vG~~i~g~lsD~~GRk~------~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~ 195 (521)
T KOG0255|consen 122 LGQSLFFLGVLVGSLIFGPLSDRFGRKP------VLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGL 195 (521)
T ss_pred HHHHHHHHHHHHHHhhheehHhhcccHH------HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhh
Confidence 3677888889999999999999998852 334445555555544444 344568889999999999999999999
Q ss_pred HHHhhcccchhhhhhh--H-hhhhhhHhhhhcCcCCCCCCcccCCcccHHHHHHHHHHHHHHHHH
Q 012908 367 ASELFGLKKFGALYNF--L-TLANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVIL 428 (453)
Q Consensus 367 ~s~~FG~k~fg~~yg~--~-~la~~ig~~l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l 428 (453)
++|+++.|+=+..=.+ . +.++.+++.+.+...+ -+|..+++.....++.++.
T Consensus 196 ~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~----------~Wr~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 196 VAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITR----------DWRWLFWIISIPSGLFLLL 250 (521)
T ss_pred heeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh----------hHHHHHHHHHHHHHHHHHH
Confidence 9999999987655444 1 2333333333332111 3888888888777776665
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.057 Score=57.98 Aligned_cols=129 Identities=17% Similarity=0.235 Sum_probs=87.4
Q ss_pred hHHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhcc-CchhHHHHHHHHHhhhhhhcchhHH
Q 012908 287 HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMG-WPGAMYVGTLLIGLGYGAHWAIVPA 365 (453)
Q Consensus 287 ~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~~-~~~~l~~~~~liG~~yG~~~~~~p~ 365 (453)
+.+++.+.+.+.+|.+.+|.++|+++||+ .+.++.++..+|.++.+.. +...+.++-++.|+++|+...+.|.
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~------~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~pi 165 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKK------TLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPV 165 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchh
Confidence 46999999999999999999999999863 3455566666676665443 4557999999999999999999999
Q ss_pred HHHHhhcccchhhhhhhHh----hhhhhHhhhhcCcCCCCCCcccCCcccHHHHHHHHHHHHHHHHH
Q 012908 366 AASELFGLKKFGALYNFLT----LANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVIL 428 (453)
Q Consensus 366 i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l 428 (453)
.++|+=..+.=|..=.... .+..+| ++.+...+.. . .-||..+.+....+++-.+.
T Consensus 166 y~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~----~--~~Wr~~~~~~~i~~~~~~~~ 225 (513)
T KOG0254|consen 166 YISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKV----Y--AGWRIPLGLALIPAVILALG 225 (513)
T ss_pred hHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccC----C--ccHHHHHHHHHHHHHHHHHH
Confidence 9999976544333333222 333333 4444321110 0 24887776666655554444
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0085 Score=62.99 Aligned_cols=134 Identities=17% Similarity=0.242 Sum_probs=77.9
Q ss_pred HHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHH----hccCc-h---hHHHHHHHHHhhhhhhcchh
Q 012908 292 MISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFL----GMGWP-G---AMYVGTLLIGLGYGAHWAIV 363 (453)
Q Consensus 292 l~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~----~~~~~-~---~l~~~~~liG~~yG~~~~~~ 363 (453)
.-.+.|.+|+++.|++.|+++||+.+-.. .++|.++-.+. ....| . +|..==.+.|++-|+.+.+-
T Consensus 92 ~A~vGti~GQl~FG~lgD~~GRK~vYG~~------liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlS 165 (538)
T KOG0252|consen 92 AALVGTIFGQLFFGWLGDKFGRKKVYGKE------LIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLS 165 (538)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhhHH------HHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcch
Confidence 45677999999999999999998765332 22222222221 12333 2 23333468899999999999
Q ss_pred HHHHHHhhcccchhhhhhhHh--------hhhhhHhhhhcCcCCCCCCcccCCcccHHHHHHHHHHHHHHHH-HHHHHHH
Q 012908 364 PAAASELFGLKKFGALYNFLT--------LANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVI-LSMILVH 434 (453)
Q Consensus 364 p~i~s~~FG~k~fg~~yg~~~--------la~~ig~~l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~-l~l~l~~ 434 (453)
..++||+=-.|.=|+.-+.++ .+.+++-++..-.++ .|.+.+||...=.++=....+|++ ..+.+.+
T Consensus 166 AtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~----~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~ 241 (538)
T KOG0252|consen 166 ATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEK----IFNGPSTYPHLDGVWRIIFGLGAVPALLVLYF 241 (538)
T ss_pred HHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhc----cCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999755555444443332 122233333332221 244556676665555555555555 3445555
Q ss_pred h
Q 012908 435 R 435 (453)
Q Consensus 435 r 435 (453)
|
T Consensus 242 R 242 (538)
T KOG0252|consen 242 R 242 (538)
T ss_pred h
Confidence 6
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.095 Score=54.44 Aligned_cols=40 Identities=35% Similarity=0.640 Sum_probs=36.0
Q ss_pred HHhhcCccchhhhHhHHHhhhCCCC--CCchhhhhhhhhhhh
Q 012908 8 FVGNNGETYFNTAALVSCVQNFPKS--RGPVVGILKGFAGLG 47 (453)
Q Consensus 8 ~l~g~g~~~~~ta~lvt~~~nFP~~--RG~v~gl~k~~~GLS 47 (453)
.+=|.|+.+++|+.+---++.||++ ||.|.|+..+|.+|+
T Consensus 167 ~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG 208 (464)
T KOG3764|consen 167 SLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLG 208 (464)
T ss_pred HHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhcc
Confidence 4568999999999999999999963 799999999999986
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=96.04 E-value=2.6 Score=44.86 Aligned_cols=53 Identities=19% Similarity=0.136 Sum_probs=43.5
Q ss_pred chhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhhhhHhhhh
Q 012908 342 PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFT 394 (453)
Q Consensus 342 ~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~ig~~l~ 394 (453)
...+.+..++.|++.....+....+++++-..+.-|+..|+..++..+|+++-
T Consensus 381 ~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~ 433 (475)
T TIGR00924 381 PWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLG 433 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999988888888888766655555543
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.073 Score=55.58 Aligned_cols=142 Identities=16% Similarity=0.179 Sum_probs=98.6
Q ss_pred HHHHHhCCChhhH--HHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhccCc-hhHHHHHHHH
Q 012908 276 QMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWP-GAMYVGTLLI 352 (453)
Q Consensus 276 ~i~~alg~~~~~~--~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~~~li 352 (453)
.|.++.|++.++. +-|.+++.=.++...+|.+|||-..|+ ++.+.+++.++..+++.+.+. ..+.+.-++-
T Consensus 54 ~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~------fm~~gLilsai~nil~Gfs~s~~~~~~l~~ln 127 (448)
T COG2271 54 ALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRY------FMAFGLILSAIVNILFGFSPSLFLFAVLWVLN 127 (448)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCce------eehHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4566667887664 889999999999999999999875543 334445555554445444332 2466677888
Q ss_pred HhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhh--cCcCCCCCCcccCCcccHHHHHHHHHHHHHHH
Q 012908 353 GLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFT--SMPRVDEPLKCEGSICYFLTSMIMSGLCIVAV 426 (453)
Q Consensus 353 G~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~--~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~ 426 (453)
|+--|..|+-.--++..+|..|.=|+-|++-. +|..+.+.+. +. +......|.+|++-++++++-.
T Consensus 128 g~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~--------~~~~~~w~~~f~~pgiiaiiva 199 (448)
T COG2271 128 GWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAF--------FAFHGGWRAAFYFPGIIAIIVA 199 (448)
T ss_pred HHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHH--------HHhccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888753 4444444433 21 1011248999999887765544
Q ss_pred HHHHH
Q 012908 427 ILSMI 431 (453)
Q Consensus 427 ~l~l~ 431 (453)
+..++
T Consensus 200 l~~~~ 204 (448)
T COG2271 200 LILLF 204 (448)
T ss_pred HHHHH
Confidence 44433
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.033 Score=58.16 Aligned_cols=80 Identities=20% Similarity=0.244 Sum_probs=58.6
Q ss_pred hhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhccCc-h--------hHHHHHHHHHhhhhhhcchhHHHHH
Q 012908 298 FLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWP-G--------AMYVGTLLIGLGYGAHWAIVPAAAS 368 (453)
Q Consensus 298 ~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~~~~-~--------~l~~~~~liG~~yG~~~~~~p~i~s 368 (453)
.+|-+.+|.++||++||+ .+.....+.+++.++....+. . .+.+.-++.|++.|..++..+.+++
T Consensus 70 ~ig~~~~G~l~Dr~Grr~------~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~ 143 (434)
T PRK15075 70 PLGAIVLGAYIDRVGRRK------GLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLA 143 (434)
T ss_pred hhHHHHHHHHhhhhchHH------HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHH
Confidence 457788999999998863 234444555555555443322 1 2466778999999999999999999
Q ss_pred HhhcccchhhhhhhH
Q 012908 369 ELFGLKKFGALYNFL 383 (453)
Q Consensus 369 ~~FG~k~fg~~yg~~ 383 (453)
|++-.|+-|+.-++.
T Consensus 144 e~~p~~~rg~~~~~~ 158 (434)
T PRK15075 144 EIATPGRKGFYTSWQ 158 (434)
T ss_pred hhCCcccchHHHHHH
Confidence 999989888887764
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.067 Score=59.29 Aligned_cols=71 Identities=14% Similarity=0.224 Sum_probs=55.5
Q ss_pred CHHHHhhcHHHHHHHHHHHhhccccceeecchHHHHHH-hCCChhhH--HHHHHHH-hhhhccccccchhhhhhh
Q 012908 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTHI--FVSMISI-WNFLGRVGGGYFSEIIVR 313 (453)
Q Consensus 243 t~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~a-lg~~~~~~--~Vsl~si-~n~~GRl~~G~lsD~l~~ 313 (453)
..+++++++.||...+..++..+.-..+..-+....++ +|.+.... +.++..+ ...+|.+++|+++||+..
T Consensus 322 ~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~ 396 (633)
T TIGR00805 322 IIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKL 396 (633)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecc
Confidence 45678999999999999999888777777777777775 57765433 5556665 467999999999998864
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.089 Score=55.15 Aligned_cols=179 Identities=16% Similarity=0.132 Sum_probs=104.4
Q ss_pred HHHHhhcHHHHHHHHHHHhhccccceeecchHHHHH-HhCCChh--hH----HHHHHHHhhhhccccccchhhhhhhccC
Q 012908 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNT--HI----FVSMISIWNFLGRVGGGYFSEIIVRDYA 316 (453)
Q Consensus 244 ~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~-alg~~~~--~~----~Vsl~si~n~~GRl~~G~lsD~l~~~~~ 316 (453)
..+.+|.++||.+- ++.+++.+.-.+.++.-++.- +...+.. +. ..++=-+..+..=..+ +++.+|.+
T Consensus 213 ~~~l~k~~~fw~~~-l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~----p~li~rig 287 (412)
T PF01306_consen 213 VLSLFKMRNFWFFV-LFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFS----PWLINRIG 287 (412)
T ss_dssp HHHHTTSHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH-
T ss_pred HHHHhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHH----HHHHHhcC
Confidence 35778999999854 445554444444443333332 2222211 11 3333333344443344 44544444
Q ss_pred CchhHHHHHHHHHHHHHHHHHh-ccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH-hhhhhhHhhhh
Q 012908 317 YPRPVAMAVAQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL-TLANPAGSIFT 394 (453)
Q Consensus 317 ~~r~~~l~~~~~~~~~~~ll~~-~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~-~la~~ig~~l~ 394 (453)
. | ..+.++..++++=....+ ..++..+.+.=.+=|+.++...-..-=.+++.|..|-.++.|.+. .++..+|..++
T Consensus 288 ~-k-~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~ 365 (412)
T PF01306_consen 288 A-K-NLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIIL 365 (412)
T ss_dssp H-H-HHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHH
T ss_pred h-H-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2 234455556666665554 344556777788888888887777777888999988778999885 46666666655
Q ss_pred cC-----cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012908 395 SM-----PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 438 (453)
Q Consensus 395 ~~-----~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r~r~ 438 (453)
+. +|+- -|+.+|++++++.+...+++.......++
T Consensus 366 s~~~G~lyd~~---------G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 366 SPLAGYLYDRI---------GFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred hhhHHhhHhhc---------CcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 54 3432 38899999998888777777766554443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.13 Score=52.82 Aligned_cols=161 Identities=17% Similarity=0.255 Sum_probs=98.5
Q ss_pred HHHHHHHHhhccccceeecchHHHHH----HhCCChhhH--HHHH----HHHhhhhccccccchhhhhhhccCCchhHHH
Q 012908 254 WLIFFSLLLGSGSGLTVIDNLGQMSQ----SLGYDNTHI--FVSM----ISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 323 (453)
Q Consensus 254 Wll~~~~~~~~g~gl~~i~n~~~i~~----alg~~~~~~--~Vsl----~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l 323 (453)
|++.....+...--=..+..++++.. ++|.+.+.+ +.++ +++++.+ .-++.||.+..|.+
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~--------a~~Lar~~g~er~l-- 80 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPA--------APRLARRFGEERSL-- 80 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHhhHHHH--
Confidence 44444444433322335556666554 456665432 2222 3333322 24666666666644
Q ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhhhhHhhhhcC-cCCCCC
Q 012908 324 AVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSM-PRVDEP 402 (453)
Q Consensus 324 ~~~~~~~~~~~ll~~~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~ig~~l~~~-~~~~~~ 402 (453)
+...++.++|.++=.......++.++.++|.+-+....+.|+++.|.|+ |+-+..=|+-.++-.+|+-+-+. .-+-.+
T Consensus 81 ~~~Llli~~G~~iR~~~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~ 159 (395)
T COG2807 81 FLALLLIAAGILIRSLGGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQ 159 (395)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHH
Confidence 4556666777766434444579999999999999999999999999999 88888877755554444443332 000000
Q ss_pred CcccCCcccHHHHHHHHHHHHHHHHHH
Q 012908 403 LKCEGSICYFLTSMIMSGLCIVAVILS 429 (453)
Q Consensus 403 ~~C~G~~Cy~~~f~i~~~~~~~~~~l~ 429 (453)
+ .+..|.++..++..+++++++=
T Consensus 160 ---~-~~gW~~aL~~WAl~allAl~~W 182 (395)
T COG2807 160 ---H-SGGWRGALGFWALLALLALLIW 182 (395)
T ss_pred ---h-hccHHHHHHHHHHHHHHHHHHH
Confidence 0 1359999999999888765543
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.099 Score=54.76 Aligned_cols=147 Identities=13% Similarity=0.073 Sum_probs=82.3
Q ss_pred HhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhccC---c---hhHHHHHHH
Q 012908 280 SLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGW---P---GAMYVGTLL 351 (453)
Q Consensus 280 alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~~~---~---~~l~~~~~l 351 (453)
.+|.+... ...++.-++.++.-.+.|+++||...|++-.|||.+..+........+++..+. . ..+++...+
T Consensus 39 ~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l 118 (444)
T PRK09669 39 VFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYIL 118 (444)
T ss_pred hcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHH
Confidence 35666543 478888899999999999999998877777788876544433333223333322 1 123344556
Q ss_pred HHhhhhhhcchhHHHHHHhhc-ccchhhh----hhhHhhhhhhHhh----hhcCcCCCCCCcccCCcccHHHHHHHHHHH
Q 012908 352 IGLGYGAHWAIVPAAASELFG-LKKFGAL----YNFLTLANPAGSI----FTSMPRVDEPLKCEGSICYFLTSMIMSGLC 422 (453)
Q Consensus 352 iG~~yG~~~~~~p~i~s~~FG-~k~fg~~----yg~~~la~~ig~~----l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~ 422 (453)
.+.+|....--+-++.+|+.- .++-++. .+...+|..+++. +.+.....+ ....|+.++.+.+.++
T Consensus 119 ~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~-----~~~g~~~~~~i~~ii~ 193 (444)
T PRK09669 119 LSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGD-----EQKGYFYAMMVMGLLG 193 (444)
T ss_pred HHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-----hhhhHHHHHHHHHHHH
Confidence 677777666555566666652 1222222 2222333333332 222111100 1246888888777777
Q ss_pred HHHHHHHHH
Q 012908 423 IVAVILSMI 431 (453)
Q Consensus 423 ~~~~~l~l~ 431 (453)
++..+++.+
T Consensus 194 ~v~~~~~~~ 202 (444)
T PRK09669 194 VVLFFCCFF 202 (444)
T ss_pred HHHHHHHhC
Confidence 666655543
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.043 Score=59.21 Aligned_cols=167 Identities=15% Similarity=0.160 Sum_probs=104.9
Q ss_pred HHHHHHHHhhccccceeecchH----HHHHHhCCChh--hHHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHH
Q 012908 254 WLIFFSLLLGSGSGLTVIDNLG----QMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 327 (453)
Q Consensus 254 Wll~~~~~~~~g~gl~~i~n~~----~i~~alg~~~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~ 327 (453)
|..-++.|+..+....+++..| .+.+..+.++. +...|+..-...+.-.+.+.+.||++. |+. ..+..
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~-----R~v-~i~G~ 118 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGC-----RTV-MIAGG 118 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCc-----hHH-HHHHH
Confidence 3333444444444444455555 33344455443 335555555555555556667776654 333 35556
Q ss_pred HHHHHHHHHHhccC--chhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhhhhHhhhhcCcCCCCCCcc
Q 012908 328 FVMAIGHIFLGMGW--PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSMPRVDEPLKC 405 (453)
Q Consensus 328 ~~~~~~~ll~~~~~--~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~ig~~l~~~~~~~~~~~C 405 (453)
++.++|.++-.+.. ......-.++.|++.|..+.-...++..||- |+=+.-=|+...+.++|..++..-.+ ..
T Consensus 119 ~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~----~l 193 (509)
T KOG2504|consen 119 LVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLK----YL 193 (509)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHH----HH
Confidence 66677777644433 3334447788899999999999999999998 88888889999999999998875110 01
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHH
Q 012908 406 EGSICYFLTSMIMSGLCIVAVILSMI 431 (453)
Q Consensus 406 ~G~~Cy~~~f~i~~~~~~~~~~l~l~ 431 (453)
...--+|.++++..++++-.++..+.
T Consensus 194 ~~~~G~r~~~l~~~~~~l~~~~~~~~ 219 (509)
T KOG2504|consen 194 LSKYGWRGALLIFGGISLNVLVAGAL 219 (509)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 11223899999998888555555443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.19 Score=53.49 Aligned_cols=171 Identities=15% Similarity=0.078 Sum_probs=102.3
Q ss_pred hcHHHHHHHHHHHhhccccceeecchHHHHH-HhCCChhhH--HHHHHHHhhhhccccccchhhhhhhccCCchhHHHHH
Q 012908 249 IKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAV 325 (453)
Q Consensus 249 ~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~-alg~~~~~~--~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~ 325 (453)
.+..+.++...+ +..|..-.+..-+.++.+ ++|.++++. ++++..+--.+-- ++|.++|++.. .+..|.|.+.+
T Consensus 24 ~~~~~~~~~~~y-~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~-l~g~l~D~~~i-~G~rRr~~l~~ 100 (468)
T TIGR00788 24 PRVVLAIGLQVL-FVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKP-FAGVMSDTFPL-FGYTKRWYLVL 100 (468)
T ss_pred cchHHHHHHHHH-HHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCC-CCccchHHHHH
Confidence 444555555444 455555444556667776 479987654 7777777777744 49999999952 23334455565
Q ss_pred HHHHH-HHHHHHHhccCc-hhHH-HHHHHHHhhhhhhcchhHHHHHHhhcccc-------hhhhhhhHhhhhhhHhhhhc
Q 012908 326 AQFVM-AIGHIFLGMGWP-GAMY-VGTLLIGLGYGAHWAIVPAAASELFGLKK-------FGALYNFLTLANPAGSIFTS 395 (453)
Q Consensus 326 ~~~~~-~~~~ll~~~~~~-~~l~-~~~~liG~~yG~~~~~~p~i~s~~FG~k~-------fg~~yg~~~la~~ig~~l~~ 395 (453)
..++. +++...+..... ..+. +...+++++.+..-...=.++.|..- +. .+..|+...+|..+|+++.+
T Consensus 101 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G 179 (468)
T TIGR00788 101 SGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGG 179 (468)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHH
Confidence 55554 233322322221 1222 35678888888888888888888876 32 33455554566666666554
Q ss_pred C-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHH
Q 012908 396 M-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 432 (453)
Q Consensus 396 ~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l 432 (453)
. .+. --++..|.+.+++.++..+..+++
T Consensus 180 ~l~~~---------~~~~~~f~~~a~l~ll~~~~~~~~ 208 (468)
T TIGR00788 180 PLLDK---------TLTRILFLITAALLLLQLFVSNLS 208 (468)
T ss_pred HHHHh---------cCcchHHHHHHHHHHHHHHHHHhc
Confidence 3 111 126778888887777664444443
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.22 Score=52.05 Aligned_cols=133 Identities=15% Similarity=0.195 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhhccccceeecchHHHHHHhCCChhhH--HHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHH
Q 012908 251 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQF 328 (453)
Q Consensus 251 ~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~~--~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~ 328 (453)
.+...+++..+...|+=+.+ .+...++.|.+..++ ..|+..+...++..++|.++||..++++ .+.+..+
T Consensus 5 ~rLs~~~f~~f~~~G~~~p~---~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~-----~l~~~~l 76 (400)
T PF03825_consen 5 FRLSLMYFLYFFAYGAFLPY---LPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKR-----ILALLSL 76 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHH-----HHHHHHH
Confidence 34455566666667765555 567888999887654 8889999999999999999998865322 2223333
Q ss_pred HHHHHHHHHh-ccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH----hhhhhhHhhh
Q 012908 329 VMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL----TLANPAGSIF 393 (453)
Q Consensus 329 ~~~~~~ll~~-~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~----~la~~ig~~l 393 (453)
+.++..++.. ......+....++..+.+....++.-+++-+.=+ +-+++||-+ ++|..+++..
T Consensus 77 ~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~ 144 (400)
T PF03825_consen 77 LSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALA 144 (400)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHH
Confidence 3333222222 2334445556667777787777777777777643 445556554 5666666543
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.08 Score=54.96 Aligned_cols=132 Identities=17% Similarity=0.247 Sum_probs=100.9
Q ss_pred HHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhccC-chhHHHHHHHHHhhhhhhcchhHHHH
Q 012908 289 FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGW-PGAMYVGTLLIGLGYGAHWAIVPAAA 367 (453)
Q Consensus 289 ~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~~~-~~~l~~~~~liG~~yG~~~~~~p~i~ 367 (453)
+.+..++.+.+--...|.+.||++.| +| +++...+|...-.+|++++ ...+.++=.+=|++.-+.+..--+++
T Consensus 111 LFaskA~~qllvnp~~G~l~~~iGy~--ip----m~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglaml 184 (464)
T KOG3764|consen 111 LFASKALVQLLVNPFFGNLIDRIGYK--IP----MVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAML 184 (464)
T ss_pred HHHHHHHHHHHhcccchhhHHHhccc--cH----HHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHH
Confidence 66777788888889999999999774 32 3556666666677777765 34788899999999999999999999
Q ss_pred HHhhcccc-----hhhhhhhHh----hhhhhHhhhhcCcCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012908 368 SELFGLKK-----FGALYNFLT----LANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 438 (453)
Q Consensus 368 s~~FG~k~-----fg~~yg~~~----la~~ig~~l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r~r~ 438 (453)
+|.|+-++ .|...|++. +|+++|++++.. .-|+.+|+|.++++++...+-+.+...++.
T Consensus 185 Ad~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~------------~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~ 252 (464)
T KOG3764|consen 185 ADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF------------AGKSAPFLVLAIVLLLDGALQLLVIEPTEM 252 (464)
T ss_pred HHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh------------cCCcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence 99999666 455566655 456666655442 238899999999999999988887766543
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.19 Score=53.22 Aligned_cols=173 Identities=16% Similarity=0.201 Sum_probs=105.2
Q ss_pred HHHhhcHHHHHHHHHHHhhccccceeecchHHHHHHhCCChhh----------HHHHHHHHhhhh-ccccccchhhhhhh
Q 012908 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH----------IFVSMISIWNFL-GRVGGGYFSEIIVR 313 (453)
Q Consensus 245 ~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~----------~~Vsl~si~n~~-GRl~~G~lsD~l~~ 313 (453)
+.++.+.-=|.++=+-+-+.+. |.+.|.++.|+.+.. ..--++.+++.+ |-.++.+++|+++|
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL------~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGR 377 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNL------FQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGR 377 (538)
T ss_pred HHHHHHHHHHHhhhhhhhcccc------HHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhh
Confidence 4556666666666555544332 567788877765321 123356777777 99999999999998
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhccC------ch--hHHH-HHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh
Q 012908 314 DYAYPRPVAMAVAQFVMAIGHIFLGMGW------PG--AMYV-GTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT 384 (453)
Q Consensus 314 ~~~~~r~~~l~~~~~~~~~~~ll~~~~~------~~--~l~~-~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~ 384 (453)
|+ +...-..++.+-.+.++... .+ .+|. .-.+.-++=++.-.+ +-+|.|-.|-=|+-||+-.
T Consensus 378 k~------iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfi---vpaE~FParvR~t~hGIsA 448 (538)
T KOG0252|consen 378 KY------IQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFI---VPAEIFPARVRSTCHGISA 448 (538)
T ss_pred HH------HHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEE---eehhhchHHHhhhhhhHHH
Confidence 63 33333444444444433221 11 1221 222222233333333 4478899999999999964
Q ss_pred ----hhhhhHhhhhcCc-CCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012908 385 ----LANPAGSIFTSMP-RVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTT 437 (453)
Q Consensus 385 ----la~~ig~~l~~~~-~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r~r 437 (453)
.+.++|.+.|+.. ++. .--..-++.+|++.++++.++.+..+.+- .++
T Consensus 449 A~GK~GAivg~~~F~~~t~~~----yp~~~g~~~v~~i~~~~~~~gi~~T~l~p-Etk 501 (538)
T KOG0252|consen 449 ASGKAGAIVGAFGFLYLTDHN----YPPNIGVRNVFIILAGCMLLGILFTLLIP-ETK 501 (538)
T ss_pred HhccchHHHHHHHhhHhhhcc----CCccccchHHHHHHHHHHHHhHheeEEee-ccc
Confidence 6778888888761 111 10122489999999999999999888776 443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.11 Score=53.71 Aligned_cols=99 Identities=20% Similarity=0.263 Sum_probs=64.5
Q ss_pred HHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhccCchhHHHH-HHHHHhhhhhhcchhHHHH
Q 012908 289 FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVG-TLLIGLGYGAHWAIVPAAA 367 (453)
Q Consensus 289 ~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~~~~~~l~~~-~~liG~~yG~~~~~~p~i~ 367 (453)
.=|.+++.-++--..+|-+||+.+|| +.. .+..+..++..++++....-...+. =.+.|+ +=+..++.-+++
T Consensus 73 lGSsF~ilQ~~sS~~~G~~SD~yGRk-----pvl-l~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi-~kgnl~v~rAii 145 (451)
T KOG2615|consen 73 LGSSFSILQFISSPLWGCLSDRYGRK-----PVL-LACLIGVALSYLLWALSRNFAAFVLARFLGGI-FKGNLSVIRAII 145 (451)
T ss_pred HhhHHHHHHHHhhhhhhhhhhhhCch-----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccCchHHHHHHH
Confidence 55689999999999999999999995 233 3333334445555544433223333 444454 445678889999
Q ss_pred HHhhcccch-------hhhhhhH-hhhhhhHhhhh
Q 012908 368 SELFGLKKF-------GALYNFL-TLANPAGSIFT 394 (453)
Q Consensus 368 s~~FG~k~f-------g~~yg~~-~la~~ig~~l~ 394 (453)
+|.+-.|+- |+-||+- .+||.+|+|+-
T Consensus 146 sdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla 180 (451)
T KOG2615|consen 146 SDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLA 180 (451)
T ss_pred HhhcChhhccceeeeeehhhhcchhhcchhhhHHH
Confidence 999976654 5555553 37777887763
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=6.6 Score=42.08 Aligned_cols=143 Identities=13% Similarity=0.047 Sum_probs=78.5
Q ss_pred HHHHHHHhhhhccccccchhhhhhhccCCchhH-HHHHHHHHHHHHHHH-------Hhcc----CchhHHHHHHHHHhhh
Q 012908 289 FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV-AMAVAQFVMAIGHIF-------LGMG----WPGAMYVGTLLIGLGY 356 (453)
Q Consensus 289 ~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~-~l~~~~~~~~~~~ll-------~~~~----~~~~l~~~~~liG~~y 356 (453)
+.++..++-.+...+.|.+.||+++|..-|++. -+.+..++..++.+. +... +...+....++.|++.
T Consensus 314 ~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge 393 (489)
T PRK10207 314 FQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGE 393 (489)
T ss_pred HHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHH
Confidence 445555555444455678999998876433322 223333344444321 1111 1224556888999999
Q ss_pred hhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcCcCC-CCC-CcccCCcccHHHHHHHHHHHHHHHHHHH
Q 012908 357 GAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSMPRV-DEP-LKCEGSICYFLTSMIMSGLCIVAVILSM 430 (453)
Q Consensus 357 G~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~~~~-~~~-~~C~G~~Cy~~~f~i~~~~~~~~~~l~l 430 (453)
+......-..+.+.-..|.-|.--|+.. +|..+|..+-+.... .+. +.-....-|..-|...++++++..++..
T Consensus 394 ~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~ 473 (489)
T PRK10207 394 LFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMA 473 (489)
T ss_pred HHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888888877777777777765 455555544432110 000 0000011266667666666655444443
Q ss_pred H
Q 012908 431 I 431 (453)
Q Consensus 431 ~ 431 (453)
.
T Consensus 474 ~ 474 (489)
T PRK10207 474 L 474 (489)
T ss_pred H
Confidence 3
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.0043 Score=64.70 Aligned_cols=100 Identities=24% Similarity=0.383 Sum_probs=77.1
Q ss_pred HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhcc----CchhHHHHHHHHHhhhhhhcchh
Q 012908 288 IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMG----WPGAMYVGTLLIGLGYGAHWAIV 363 (453)
Q Consensus 288 ~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~~----~~~~l~~~~~liG~~yG~~~~~~ 363 (453)
...+...++..+|-++.|+++||++||+.. .+...++.++.++.... +...+.++-.+.|++.|....+.
T Consensus 50 ~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~ 123 (451)
T PF00083_consen 50 LLTSSFFIGAIVGALIFGFLADRYGRKPAL------IISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVS 123 (451)
T ss_pred HHHHHHHhhhcccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccccc
Confidence 367888899999999999999999997443 34455555555554433 35567788899999999999999
Q ss_pred HHHHHHhhcccchhhhhhhHhhhhhhHhhh
Q 012908 364 PAAASELFGLKKFGALYNFLTLANPAGSIF 393 (453)
Q Consensus 364 p~i~s~~FG~k~fg~~yg~~~la~~ig~~l 393 (453)
|..+.|.=..|+=|..-.+..++..+|..+
T Consensus 124 ~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~ 153 (451)
T PF00083_consen 124 PIYISEIAPPKHRGFLSSLFQLFWALGILL 153 (451)
T ss_pred cccccccccccccccccccccccccccccc
Confidence 999999998888887777766666555443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.49 Score=50.77 Aligned_cols=182 Identities=18% Similarity=0.166 Sum_probs=109.6
Q ss_pred hhcHHHHHHHHHHHhhccccceeecchHHHHHHhCCChh-hHHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHH
Q 012908 248 LIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT-HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVA 326 (453)
Q Consensus 248 l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~-~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~ 326 (453)
.+++-++..-+..+-....--.+++-..+|.+..|.++. .....+.++.|.++-++++++-||++||. .+...
T Consensus 292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~------lll~s 365 (513)
T KOG0254|consen 292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRK------LLLFG 365 (513)
T ss_pred hHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHH------HHHHh
Confidence 455666666666666664445677788888999888755 55666788889999999999999997742 23444
Q ss_pred HHHHHHHHHHHh------cc----C--chh-HHHHHHHHHhhhhhhcchhHH-HHHHhhcccchhhhhhhHhhhhhhHhh
Q 012908 327 QFVMAIGHIFLG------MG----W--PGA-MYVGTLLIGLGYGAHWAIVPA-AASELFGLKKFGALYNFLTLANPAGSI 392 (453)
Q Consensus 327 ~~~~~~~~ll~~------~~----~--~~~-l~~~~~liG~~yG~~~~~~p~-i~s~~FG~k~fg~~yg~~~la~~ig~~ 392 (453)
...|.++++++. .. . ... ......+.-.+|...++-.|. +.+|.|-+|.=++-.++....+-+..+
T Consensus 366 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~ 445 (513)
T KOG0254|consen 366 AAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNF 445 (513)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHH
Confidence 444444444332 11 1 111 222333444577778888887 669999988777777776544444444
Q ss_pred hhcCcCCCCCCcc-cCCcccHHHHHHHHHHHHHHHH-HHHHHHHhhhhhh
Q 012908 393 FTSMPRVDEPLKC-EGSICYFLTSMIMSGLCIVAVI-LSMILVHRTTNVY 440 (453)
Q Consensus 393 l~~~~~~~~~~~C-~G~~Cy~~~f~i~~~~~~~~~~-l~l~l~~r~r~~y 440 (453)
+....-. ...+ .+ ....|....+.+.++.+ ......-.||...
T Consensus 446 ~v~~~~~--~~~~~~~---~~~~f~~f~~~~~~~~~~fv~~~~pETkg~s 490 (513)
T KOG0254|consen 446 LISFFFP--FITEALG---IGGTFGYFGGICLLSLIIFVFFFVPETKGLT 490 (513)
T ss_pred HHHHHHH--HHHHhcc---ccchHHHHHHHHHHHHHHHheEEcccCCCCc
Confidence 3332000 0001 11 35567777777777766 4545555555433
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.19 Score=51.46 Aligned_cols=162 Identities=12% Similarity=0.061 Sum_probs=78.4
Q ss_pred HHhhcccccee-ecchHHHHHHhCCChhhH-HHHHHHHhhhhccccccchhhhh-hhccCCchhHHHHHHHHHHHHHHHH
Q 012908 260 LLLGSGSGLTV-IDNLGQMSQSLGYDNTHI-FVSMISIWNFLGRVGGGYFSEII-VRDYAYPRPVAMAVAQFVMAIGHIF 336 (453)
Q Consensus 260 ~~~~~g~gl~~-i~n~~~i~~alg~~~~~~-~Vsl~si~n~~GRl~~G~lsD~l-~~~~~~~r~~~l~~~~~~~~~~~ll 336 (453)
+.+..|....+ ..-+..+.+++|.+..++ +.++.++. .+.|++++.+.|++ .+|.+..|.|.+.. +++.......
T Consensus 9 ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~-~~~~~l~~p~~~~~~~~~~g~r~~~i~~~-~~~~~~~~~~ 86 (390)
T TIGR02718 9 LYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLP-WVVKFLWAPLVDNWWSWRLGRRRSWVLPM-QCLVSACLAS 86 (390)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHhccccccCCcchhHHHHH-HHHHHHHHHH
Confidence 33445555443 345666778889887654 22222221 44455566555553 23333345554443 2222211111
Q ss_pred Hh-c--c-C-chhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH----hhhhhhHhhhhcC-cCCCCCCccc
Q 012908 337 LG-M--G-W-PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL----TLANPAGSIFTSM-PRVDEPLKCE 406 (453)
Q Consensus 337 ~~-~--~-~-~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~----~la~~ig~~l~~~-~~~~~~~~C~ 406 (453)
+. . . . ...+.....+.++....+-...-.++.|....|+++.--+.. .+|..+|+.+... .+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~------- 159 (390)
T TIGR02718 87 LALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK------- 159 (390)
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 11 1 1 1 112222333333444444444455677877777765432222 3455555543322 111
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHH
Q 012908 407 GSICYFLTSMIMSGLCIVAVILSMIL 432 (453)
Q Consensus 407 G~~Cy~~~f~i~~~~~~~~~~l~l~l 432 (453)
-.+|.+|++.+++.++..+..+++
T Consensus 160 --~gw~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 160 --FGQRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred --hCHHHHHHHHHHHHHHHHHHHHHc
Confidence 138899999998887766665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.086 Score=55.28 Aligned_cols=66 Identities=18% Similarity=0.277 Sum_probs=42.2
Q ss_pred hhcHHHHHH---HHHHHhhccccceeecchHHHHHH-hCCChhh--HHHHHHHHhhhhccccccchhhhhhhccC
Q 012908 248 LIKADFWLI---FFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYA 316 (453)
Q Consensus 248 l~s~~FWll---~~~~~~~~g~gl~~i~n~~~i~~a-lg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~ 316 (453)
.|+++||.+ ++.++...|+-+. =..-..++ .|.+.++ ...|..++...+...+.|.++||++.|++
T Consensus 4 ~~~~~~~~~s~~~f~~Ff~~gi~~p---F~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~ 75 (412)
T PF01306_consen 4 FKNKNYWWLSLFYFFYFFIWGIFLP---FFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKH 75 (412)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHH---HHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHH
Confidence 467788844 3334444444333 33445554 7888765 48888888888888899999999987544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.21 Score=52.14 Aligned_cols=99 Identities=21% Similarity=0.297 Sum_probs=72.7
Q ss_pred HHhCCChhhH--HHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHH--hccCch--hHHHHHHHH
Q 012908 279 QSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFL--GMGWPG--AMYVGTLLI 352 (453)
Q Consensus 279 ~alg~~~~~~--~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~--~~~~~~--~l~~~~~li 352 (453)
++.+.++.+. ++++=.+...+-|+.-|++.||++.|+ |. .+..+++.+-++.+ +...+. .+.+...+.
T Consensus 42 ~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~-----~~-~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~ 115 (417)
T COG2223 42 SDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRK-----WT-ILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLL 115 (417)
T ss_pred cccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchH-----HH-HHHHHHHHHHHHHHHHHccCCchHHHHHHHHHH
Confidence 5667777654 899999999999999999999997642 22 34444444444433 333342 566677777
Q ss_pred HhhhhhhcchhHHHHHHhhcccchhhhhhhHh
Q 012908 353 GLGYGAHWAIVPAAASELFGLKKFGALYNFLT 384 (453)
Q Consensus 353 G~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~ 384 (453)
|++ |+.|++.-+.++++|-.++-|+--|+-.
T Consensus 116 G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g 146 (417)
T COG2223 116 GLA-GASFAVGMPNASFFFPKEKQGLALGIAG 146 (417)
T ss_pred hcc-cceehcccccccccCChhhhhHHHHHhc
Confidence 876 8889999999999999999998777754
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.41 Score=51.02 Aligned_cols=125 Identities=16% Similarity=0.151 Sum_probs=71.2
Q ss_pred HHhhcHHHHHHHHHHHhhccccceeecchHHHHHH---------hCCChhhH-HHHHHHHhhhhc-cccccchhhhhhhc
Q 012908 246 QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS---------LGYDNTHI-FVSMISIWNFLG-RVGGGYFSEIIVRD 314 (453)
Q Consensus 246 ~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~a---------lg~~~~~~-~Vsl~si~n~~G-Rl~~G~lsD~l~~~ 314 (453)
..++++.|-++-++..+... + .+|..+ +|.++... .+...+.++.++ -+++..++++++||
T Consensus 231 ~~~~Nrp~~~~l~~~l~~~~-~-------~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk 302 (467)
T COG2211 231 LIFKNRPLLLLLLMNLLLFI-A-------FNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKK 302 (467)
T ss_pred HHHccchHHHHHHHHHHHHH-H-------HHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH
Confidence 56678887777775544322 2 122222 12222211 333333333333 66777777777664
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhccC---chhHHHHHHHHHhhhhhhcchhHHHHHHh-------hcccchhhhhhhHh
Q 012908 315 YAYPRPVAMAVAQFVMAIGHIFLGMGW---PGAMYVGTLLIGLGYGAHWAIVPAAASEL-------FGLKKFGALYNFLT 384 (453)
Q Consensus 315 ~~~~r~~~l~~~~~~~~~~~ll~~~~~---~~~l~~~~~liG~~yG~~~~~~p~i~s~~-------FG~k~fg~~yg~~~ 384 (453)
+.+ ....++.+++.+++.+.+ ...+++..++.+++.|....+..++++|. =|.|.=|..|+.+.
T Consensus 303 ----~~~--~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~t 376 (467)
T COG2211 303 ----KLF--LIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMT 376 (467)
T ss_pred ----HHH--HHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHH
Confidence 323 334555556655433322 22355566888889999888888888875 36677788888864
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.67 E-value=1.1 Score=47.85 Aligned_cols=78 Identities=14% Similarity=0.085 Sum_probs=53.5
Q ss_pred CchhHHHHHhhcCccchhhhHhHHHhhhCC-CCCCchhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Q 012908 1 MQMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVI 79 (453)
Q Consensus 1 ~~~c~~~~l~g~g~~~~~ta~lvt~~~nFP-~~RG~v~gl~k~~~GLSaaifs~i~~~ff~~d~~~fll~la~~~~~v~~ 79 (453)
|..+++-++.|.+.+-..+.+....+..++ ++||.+..+ ...-.++.++.....+++-+ .-..+......|..+.+
T Consensus 172 ~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~--~~~~~~~~~~~~~~~a~~~~-~Wr~~~~~~~~~~~~~~ 248 (521)
T KOG0255|consen 172 WMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL--GGFFFVGGLMLPAGAAYITR-DWRWLFWIISIPSGLFL 248 (521)
T ss_pred HHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH--HHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999999996 789999888 44445555555555555544 44444444444444444
Q ss_pred hh
Q 012908 80 AL 81 (453)
Q Consensus 80 ~~ 81 (453)
+.
T Consensus 249 ~~ 250 (521)
T KOG0255|consen 249 LL 250 (521)
T ss_pred HH
Confidence 33
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=92.90 E-value=1 Score=48.90 Aligned_cols=140 Identities=12% Similarity=0.138 Sum_probs=76.0
Q ss_pred hCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhccCc-hhHHHHHHHHHhhhh
Q 012908 281 LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWP-GAMYVGTLLIGLGYG 357 (453)
Q Consensus 281 lg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~~~liG~~yG 357 (453)
+|.++.. .+.+.++++..+|-+..+ ++.++.+..| .+....++.+++.+.+....+ ....+..++.|++..
T Consensus 249 l~~~a~~yGll~a~~gvGai~Gal~~~----~l~~~~~~~~--lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~ 322 (524)
T PF05977_consen 249 LGGGASGYGLLLAAFGVGAILGALLLP----RLRRRLSSRR--LVLLASLLFALALLLLALSPSFWLALIALFLAGAAWI 322 (524)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHHH----HhhcccCcch--hhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 4554432 355555555555555544 4444333333 334445555555555555443 344557778888888
Q ss_pred hhcchhHHHHHHhhcccchhhhhhh----HhhhhhhHhhhhcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHH
Q 012908 358 AHWAIVPAAASELFGLKKFGALYNF----LTLANPAGSIFTSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 432 (453)
Q Consensus 358 ~~~~~~p~i~s~~FG~k~fg~~yg~----~~la~~ig~~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l 432 (453)
.....+-.++-+.--.+.-|+..++ ...+.++|+.+.+. .+.. ..+.++.+.++..+++.++....
T Consensus 323 ~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~---------g~~~al~~a~~~lll~~~~~~~~ 393 (524)
T PF05977_consen 323 IANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF---------GVRTALLIAGAALLLSALIALRF 393 (524)
T ss_pred HHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CHHHHHHHHHHHHHHHHHHHHHh
Confidence 8777776666555554555555444 23556777777665 2211 24667776665555555555444
Q ss_pred HHh
Q 012908 433 VHR 435 (453)
Q Consensus 433 ~~r 435 (453)
..|
T Consensus 394 ~l~ 396 (524)
T PF05977_consen 394 PLR 396 (524)
T ss_pred cCc
Confidence 333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=92.41 E-value=1.7 Score=46.09 Aligned_cols=52 Identities=10% Similarity=0.148 Sum_probs=36.0
Q ss_pred hCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHH
Q 012908 281 LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIG 333 (453)
Q Consensus 281 lg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~ 333 (453)
+|.+... ....+..++.++.-.++|+++||...|++-.|||.+..+. ..+++
T Consensus 37 ~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i-~~~i~ 90 (473)
T PRK10429 37 VGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTL-ANSVV 90 (473)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhH-HHHHH
Confidence 4666543 3667788888888889999999876666656888765443 33444
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.88 Score=48.81 Aligned_cols=81 Identities=19% Similarity=0.347 Sum_probs=60.5
Q ss_pred HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHH----HhccCchhHHHHHHHHHhhhhhhcchh
Q 012908 288 IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIF----LGMGWPGAMYVGTLLIGLGYGAHWAIV 363 (453)
Q Consensus 288 ~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll----~~~~~~~~l~~~~~liG~~yG~~~~~~ 363 (453)
..||++.+++.+|-+.+|.+.|++|||.. +.+..++..++.++ ........+.++-.+.|++-|...++.
T Consensus 64 ~~vs~f~iG~~~Gs~~~~~la~~~GRK~~------l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~ 137 (485)
T KOG0569|consen 64 LIVSIFFIGGMIGSFSSGLLADRFGRKNA------LLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLV 137 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHH------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHH
Confidence 38999999999999999999999999732 22222222222222 123445578889999999999999999
Q ss_pred HHHHHHhhccc
Q 012908 364 PAAASELFGLK 374 (453)
Q Consensus 364 p~i~s~~FG~k 374 (453)
|-.+.|.=-.+
T Consensus 138 pmyl~E~sP~~ 148 (485)
T KOG0569|consen 138 PMYLTEISPKN 148 (485)
T ss_pred HHHHhhcChhh
Confidence 99999985533
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.62 E-value=1.3 Score=46.01 Aligned_cols=128 Identities=13% Similarity=0.128 Sum_probs=74.2
Q ss_pred HHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHh--ccC---chhHHHHHHHHHhhhhhhcchhH
Q 012908 290 VSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG--MGW---PGAMYVGTLLIGLGYGAHWAIVP 364 (453)
Q Consensus 290 Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~--~~~---~~~l~~~~~liG~~yG~~~~~~p 364 (453)
+=+-+..-+=|-++.|++.||++||..+ +...++.++-.+++. .+. ...+..+.+.+-.+|+..+.
T Consensus 387 llitslaefPGlLIt~~iverlGRKkTM------al~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYv--- 457 (528)
T KOG0253|consen 387 LLITSLAEFPGLLITGVIVERLGRKKTM------ALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYV--- 457 (528)
T ss_pred HHHHHHhhCCchhHHHHHHHHhcchhHH------HHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEE---
Confidence 3356777899999999999999998654 333333333322221 222 12455566666666666554
Q ss_pred HHHHHhhcccchhhhhhhHh----hhhhhHhhhhcCcCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012908 365 AAASELFGLKKFGALYNFLT----LANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTT 437 (453)
Q Consensus 365 ~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r~r 437 (453)
.+.|.|-.+-=++--|.+. ++..+.|++.=..+ | .-..+..+-.++++++.+++..+-.-+|
T Consensus 458 -YtPEVyPTavRatgvGtcSsmaRIggI~~p~iA~~~e------~----s~sl~i~vy~~~~ilagIavcffPiEtk 523 (528)
T KOG0253|consen 458 -YTPEVYPTAVRATGVGTCSSMARIGGIFSPVIAMRAE------L----STSLPIFVYGALFILAGIAVCFFPIETK 523 (528)
T ss_pred -ecCcccchhhhhcchhhhhhHHhhhhhhhhHHHHHhc------c----ceeehHHHHHHHHHHHHHHheeeeeccC
Confidence 3446666555555556554 45555555441111 1 2345667777788888777766554443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=91.34 E-value=1.6 Score=46.49 Aligned_cols=141 Identities=9% Similarity=0.067 Sum_probs=80.8
Q ss_pred HHHHhhcHHHHHHHHHHHh--hccccceeecchHHHH-HHhCCChhhH--HHHHHHHhhhhccccccchhhhhhhccCCc
Q 012908 244 LTQALIKADFWLIFFSLLL--GSGSGLTVIDNLGQMS-QSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYP 318 (453)
Q Consensus 244 ~~~~l~s~~FWll~~~~~~--~~g~gl~~i~n~~~i~-~alg~~~~~~--~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~ 318 (453)
.++.+++++.|...+..++ -.+.+.+ ++.-... +.+|+++... ..+..++++.+|-... +++.+|..
T Consensus 245 l~~~l~~~~i~~~l~fifl~~~~~~~~~--~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~----~~~~~~~~-- 316 (468)
T TIGR00788 245 LRGAIQLLEIAKPLIFIFLSYANLPGAS--GSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGY----DRFLKTFP-- 316 (468)
T ss_pred HHHHHhcHHHHHHHHHHHHHHhhcCCCC--ceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHH----HHHHhhCC--
Confidence 4566888998863333332 3333332 2211111 2467776532 4444555555554444 45544333
Q ss_pred hhHHHHHHHHHHHHHHHHHh---------c--cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh---
Q 012908 319 RPVAMAVAQFVMAIGHIFLG---------M--GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT--- 384 (453)
Q Consensus 319 r~~~l~~~~~~~~~~~ll~~---------~--~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~--- 384 (453)
....+.+..++.+++.+... . .+...+....++.++++|..+...-.++++.=..++-|+.|++..
T Consensus 317 ~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~ 396 (468)
T TIGR00788 317 YRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASIL 396 (468)
T ss_pred HHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHH
Confidence 33444555555555443211 1 112235557889999999999999999999998888899999964
Q ss_pred -hhhhhHhh
Q 012908 385 -LANPAGSI 392 (453)
Q Consensus 385 -la~~ig~~ 392 (453)
++..+|+.
T Consensus 397 ~lg~~v~~~ 405 (468)
T TIGR00788 397 HLGSSVSGF 405 (468)
T ss_pred HHHHHHHHH
Confidence 55555553
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=91.19 E-value=8 Score=41.65 Aligned_cols=131 Identities=12% Similarity=0.116 Sum_probs=74.8
Q ss_pred cHHHHHHHHHHHhhccccceeecchHHHHH-HhC-----CChhhHHHHHHHHhhhhccccccchhhhhhhccCCchh--H
Q 012908 250 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLG-----YDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP--V 321 (453)
Q Consensus 250 s~~FWll~~~~~~~~g~gl~~i~n~~~i~~-alg-----~~~~~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~--~ 321 (453)
..--|-+|+++.. +|..-+.|=.|..= ... |+. ..-++.-+.+++.-+..|++-.++ .|. +
T Consensus 263 ~vl~WSlWwa~a~---~g~~qv~~Y~Q~LW~~v~~~~~~yNG--~veA~~tllga~~a~~ag~~~~~w------~~~~~l 331 (511)
T TIGR00806 263 QLLLWSLWWVFNS---AGYYLITYYVHTLWGTLDESLNKYNG--AVDAASTLLGAITSFIAGFVNIRW------ARWSKL 331 (511)
T ss_pred chhhhhHHHHHHh---hHHHHHHHHHHHHHHHcCCCccccCC--HHHHHHHHHHHHHHHHHHhhcCCc------hhhHHH
Confidence 4456899997643 34333333333331 111 111 122333344555667777775433 221 2
Q ss_pred HHHHHHHHHHHHHHHHhcc-CchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH-hhhhhhHh
Q 012908 322 AMAVAQFVMAIGHIFLGMG-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL-TLANPAGS 391 (453)
Q Consensus 322 ~l~~~~~~~~~~~ll~~~~-~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~-~la~~ig~ 391 (453)
.+.+.+++.+.-.++.... +--.-|++.++.+..|.+...+.-+-+++---.+.||..+|+= ++|-.+=.
T Consensus 332 ~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQt 403 (511)
T TIGR00806 332 LIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKT 403 (511)
T ss_pred HHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHH
Confidence 3333333332222222233 2336888999999999999999999999998889999999984 45544443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=90.98 E-value=0.57 Score=39.09 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=45.6
Q ss_pred chhHHHHHhhcCccchhhhHhHHHhhhCC-CCCCchhhhhhhhhhhhHHHHHHHHHHhcC
Q 012908 2 QMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIHA 60 (453)
Q Consensus 2 ~~c~~~~l~g~g~~~~~ta~lvt~~~nFP-~~RG~v~gl~k~~~GLSaaifs~i~~~ff~ 60 (453)
.+.+..++.+.+.+..++.......+.+| ++||++.++......+++.+-..+.....+
T Consensus 53 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 112 (141)
T TIGR00880 53 VLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ 112 (141)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc
Confidence 34556677777777777777777788998 569999999999988888887777666653
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=90.94 E-value=0.86 Score=41.37 Aligned_cols=86 Identities=13% Similarity=0.118 Sum_probs=54.4
Q ss_pred ccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhh--
Q 012908 302 VGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGAL-- 379 (453)
Q Consensus 302 l~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~-- 379 (453)
++.+.+.++++.| |.+++..+..++=...+...+...++.++++.|++.+..|..-...+.+.-=.++.++|
T Consensus 55 l~~P~iv~~lg~K------~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ 128 (156)
T PF05978_consen 55 LFAPSIVNKLGPK------WSMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTG 128 (156)
T ss_pred HhHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHH
Confidence 4456666677654 44455454444322223344555789999999999999999988887776655555544
Q ss_pred --hhhHhhhhhhHhhh
Q 012908 380 --YNFLTLANPAGSIF 393 (453)
Q Consensus 380 --yg~~~la~~ig~~l 393 (453)
|++...+..+|+.+
T Consensus 129 ifw~i~~~s~i~G~~~ 144 (156)
T PF05978_consen 129 IFWAIFQSSLIFGNLF 144 (156)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 44445555666543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.43 E-value=0.62 Score=49.80 Aligned_cols=137 Identities=18% Similarity=0.219 Sum_probs=92.3
Q ss_pred HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHH--h-ccCchhHHHHHHHHHhhhhhhcchhH
Q 012908 288 IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFL--G-MGWPGAMYVGTLLIGLGYGAHWAIVP 364 (453)
Q Consensus 288 ~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~--~-~~~~~~l~~~~~liG~~yG~~~~~~p 364 (453)
...|-+.++..++.+-.|++.||++.|+ .+....++.+++-++. + ......+.+.=++-|+++|..|..+.
T Consensus 77 ~i~ss~~~G~i~~~iP~g~l~~k~G~r~------v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~ 150 (466)
T KOG2532|consen 77 LIFSSFFWGYILGQIPGGYLADKFGARR------VFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIG 150 (466)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHcCchH------HHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhh
Confidence 3677777778888999999999997753 2233333333333331 1 11222567788999999999999999
Q ss_pred HHHHHhhcccchhhhhhhHhhhhhhHhhhhcCcCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 012908 365 AAASELFGLKKFGALYNFLTLANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 433 (453)
Q Consensus 365 ~i~s~~FG~k~fg~~yg~~~la~~ig~~l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~ 433 (453)
.++++++-+++-++-.++++.+.-+|+.+--. -.+.-|...--++..|++.++++++-.++-.++.
T Consensus 151 ~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp---~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~ 216 (466)
T KOG2532|consen 151 SILAKWAPPNERSTFIAILTAGSQLGTIITMP---VSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFY 216 (466)
T ss_pred ceeeeECCHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999987666555543221 0011243334589999999988776555544433
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.29 E-value=2.3 Score=46.17 Aligned_cols=51 Identities=22% Similarity=0.320 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhhhhhcchhHHHHHHh----hcccchhhhhhhHhhhhhhHhhhhcC
Q 012908 345 MYVGTLLIGLGYGAHWAIVPAAASEL----FGLKKFGALYNFLTLANPAGSIFTSM 396 (453)
Q Consensus 345 l~~~~~liG~~yG~~~~~~p~i~s~~----FG~k~fg~~yg~~~la~~ig~~l~~~ 396 (453)
++...++.|+..|+.+++..-+..+. .| +..|..|++=++|+.+|+++.+.
T Consensus 113 ~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~~~g-~~~g~ly~~ntlGa~~G~l~~~~ 167 (521)
T PRK03612 113 LYVLVLLIGLLIGMEIPLLMRILQRIRDQHLG-HNVATVLAADYLGALVGGLAFPF 167 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchh-hhhhhhHhHHhHHHHHHHHHHHH
Confidence 34456678899999977776666654 44 67888888888888888887664
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=90.28 E-value=0.76 Score=47.82 Aligned_cols=149 Identities=17% Similarity=0.205 Sum_probs=82.4
Q ss_pred hCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHH-HhccC---c---h--hHHHHH
Q 012908 281 LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIF-LGMGW---P---G--AMYVGT 349 (453)
Q Consensus 281 lg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll-~~~~~---~---~--~l~~~~ 349 (453)
+|.++.. ....+..+++++--.+.|++|||...|++-.|||.+..+.. .+++..+ +...+ . . .+.+..
T Consensus 32 ~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~-~~~~~~llf~~~p~~~~~~~~~~~~~~~~ 110 (428)
T PF13347_consen 32 LGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAIL-LALSFFLLFSPPPAGLSFTAKLVWLFVFY 110 (428)
T ss_pred cCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHH-HHHHHHHhhccccchhhhhhHHHHHHHHH
Confidence 4666543 36667788899999999999996655555567776544333 3444433 33312 1 1 234455
Q ss_pred HHHHhhhhhhcchhHHHHHHhhcc-cchhhhhhhHhhhhhhHhh--------hhcCcCCCCCCcccCCcccHHHHHHHHH
Q 012908 350 LLIGLGYGAHWAIVPAAASELFGL-KKFGALYNFLTLANPAGSI--------FTSMPRVDEPLKCEGSICYFLTSMIMSG 420 (453)
Q Consensus 350 ~liG~~yG~~~~~~p~i~s~~FG~-k~fg~~yg~~~la~~ig~~--------l~~~~~~~~~~~C~G~~Cy~~~f~i~~~ 420 (453)
.+..++|-....-+-++.+|+-.. ++-.+..+.-.....+|.. +.+..+.++ ...-|+....+.++
T Consensus 111 ~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~-----~~~~~~~~~~v~~i 185 (428)
T PF13347_consen 111 ILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGD-----TSNGYRWMALVLAI 185 (428)
T ss_pred HHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCc-----cchHHHHHHHHHHH
Confidence 566667766666555666666542 2333444443333333332 222111110 11258888888887
Q ss_pred HHHHHHHHHHHHHHh
Q 012908 421 LCIVAVILSMILVHR 435 (453)
Q Consensus 421 ~~~~~~~l~l~l~~r 435 (453)
+.+++.+++....+.
T Consensus 186 v~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 186 VGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHhhhhhheeee
Confidence 777766666555444
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.26 E-value=0.41 Score=50.63 Aligned_cols=137 Identities=15% Similarity=0.172 Sum_probs=86.2
Q ss_pred HHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHHH
Q 012908 289 FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAA 367 (453)
Q Consensus 289 ~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~ 367 (453)
+-..+.+.-.+.-.+.|++.||.-|++-+ .+...+-.++.+.-.+ ..-..+.+.=.++|++--....+.|+++
T Consensus 73 l~~vf~v~~~i~sPl~gyLadryNR~~v~------~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~I 146 (493)
T KOG1330|consen 73 LQTVFIVVFMIASPLFGYLADRYNRKRVI------AVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLI 146 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcCcceEE------eeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHh
Confidence 44455555556667889999999775422 2111111111111111 1112466678899999999999999999
Q ss_pred HHhhcccchhhhhhhHhhhhhhHhhhhcCcCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 012908 368 SELFGLKKFGALYNFLTLANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVH 434 (453)
Q Consensus 368 s~~FG~k~fg~~yg~~~la~~ig~~l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~ 434 (453)
+|.|--..=|.-+|+.+++.++|+.+--.... ..-.-+.-+|.+|.+.+++.++..++..++..
T Consensus 147 aD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs---~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~ 210 (493)
T KOG1330|consen 147 ADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGS---VVASLTFWWRWAFRGSAVLGVIVGLLVFLFVR 210 (493)
T ss_pred hhcCcchhhhHHHHHhhhhcccccceeEEeee---eeccCccceEEEEEeehHHHHHHHHHHHhhcc
Confidence 99999889999999999888888644221100 00000122788888888888776666655443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=89.23 E-value=3.6 Score=38.20 Aligned_cols=93 Identities=20% Similarity=0.287 Sum_probs=61.8
Q ss_pred hHHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cC--chhHHHHHHHHHhhhhhhcchh
Q 012908 287 HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GW--PGAMYVGTLLIGLGYGAHWAIV 363 (453)
Q Consensus 287 ~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~-~~--~~~l~~~~~liG~~yG~~~~~~ 363 (453)
....+...+...++.+..|.++|+.+|| +...+.... ..++.++... .. ...+.+...+.|++.|......
T Consensus 42 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 115 (338)
T COG0477 42 GLLLSAFFLGYAIGSLLAGPLGDRYGRR----KVLIIGLLL--FLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVA 115 (338)
T ss_pred HHHHHHHHHHHHHHhhhhhhccccccch----HHHHHHHHH--HHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHH
Confidence 4577888888888889999999999665 222222211 2223222222 22 3345556666899999999999
Q ss_pred HHHHHHhhcc-cchhhhhhhHhh
Q 012908 364 PAAASELFGL-KKFGALYNFLTL 385 (453)
Q Consensus 364 p~i~s~~FG~-k~fg~~yg~~~l 385 (453)
..+++|.+.. ++.+..++....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~ 138 (338)
T COG0477 116 SALLSEWFPEATERGLAVGLVTL 138 (338)
T ss_pred HHHHHHhcCchhHHHHHHHHHHH
Confidence 9999999986 466666666543
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.35 E-value=6.1 Score=40.63 Aligned_cols=163 Identities=13% Similarity=0.099 Sum_probs=89.0
Q ss_pred cHHHHHHHHHHHhhccccceeecchHHHHHHhCCChhhH---HHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHH
Q 012908 250 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI---FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVA 326 (453)
Q Consensus 250 s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~~---~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~ 326 (453)
.++|...|.....+=..-=.+++ ...++-|+++.++ ++.=+. .+.+-..+.|.+.||++||+.+ .+.
T Consensus 36 qr~yl~vY~La~~aDWLQGpY~Y---~LY~~yg~~~~qIa~Lf~~Gf~-Ss~i~g~~~G~laD~~Grk~~c------l~~ 105 (354)
T PF05631_consen 36 QRKYLLVYLLAMAADWLQGPYLY---ALYESYGFSEHQIAILFVAGFA-SSAIFGTFVGSLADRYGRKKAC------LLF 105 (354)
T ss_pred HHHHHHHHHHHHHHHHhhcchhH---HHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCchHHH------HHH
Confidence 45666666665554333333333 3445567765543 222222 2333345667789999986443 223
Q ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchh-----hhhhhHh-hhhhhHhh----hhcC
Q 012908 327 QFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFG-----ALYNFLT-LANPAGSI----FTSM 396 (453)
Q Consensus 327 ~~~~~~~~ll~~~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg-----~~yg~~~-la~~ig~~----l~~~ 396 (453)
+++-.++++.-...+...|+++-++.|++.-..++.+=+-.-.-...+.|. ..++.+. +++.+-.+ +-+.
T Consensus 106 cily~~scl~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~ 185 (354)
T PF05631_consen 106 CILYSLSCLTKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANV 185 (354)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHH
Confidence 444445555555666668999999999999999998876443333334443 3444333 33322222 1111
Q ss_pred -cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHH
Q 012908 397 -PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILS 429 (453)
Q Consensus 397 -~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~ 429 (453)
.+.. |.+ -..+|.....+++++.++.
T Consensus 186 l~~~~------~~g-~vaPF~~a~~~l~~~~~~I 212 (354)
T PF05631_consen 186 LADWF------GFG-PVAPFDAAIVLLAVAAVLI 212 (354)
T ss_pred HHHHh------CCC-CcchHHHHHHHHHHHHHHH
Confidence 1111 111 3678888888877766653
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=88.17 E-value=1.4 Score=45.06 Aligned_cols=100 Identities=18% Similarity=0.293 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHH--hc-cCc-------hhHHHHHHHHHhhhhhhcchhHHHHHHhhcccc-------hhhhhhhHh
Q 012908 322 AMAVAQFVMAIGHIFL--GM-GWP-------GAMYVGTLLIGLGYGAHWAIVPAAASELFGLKK-------FGALYNFLT 384 (453)
Q Consensus 322 ~l~~~~~~~~~~~ll~--~~-~~~-------~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~-------fg~~yg~~~ 384 (453)
.+.+..++.++|++++ +. ... ..++++-.+++++.|+.=+..+++.+|-|-.++ |.-.|=.+.
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in 82 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGIN 82 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHh
Confidence 3456677888888773 22 221 358999999999999999999999999998552 222233344
Q ss_pred hhhhhHhhhhcCcCCCCCCcccCCcccHHHHHHHHHHHHHHHHHH
Q 012908 385 LANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILS 429 (453)
Q Consensus 385 la~~ig~~l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~ 429 (453)
+|..++..+..... ...+|..+|.+..+..+++.++-
T Consensus 83 ~G~~~~~~~~~~i~--------~~~~~~~~f~i~~~~~~~~~~~f 119 (372)
T PF00854_consen 83 IGSLFSPTLVPYIQ--------QNYGWFLGFGIPAIGMLLALIVF 119 (372)
T ss_dssp HHHHHHHHCCCHHH--------HCS-HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhcccchhhc--------cccchhhhhhHHHHHHHHHHHHH
Confidence 55555554444321 13469999988887766655543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.25 E-value=6 Score=42.28 Aligned_cols=89 Identities=16% Similarity=0.132 Sum_probs=62.8
Q ss_pred hCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhccC----c--hhHHHHHHHH
Q 012908 281 LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGW----P--GAMYVGTLLI 352 (453)
Q Consensus 281 lg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~~~----~--~~l~~~~~li 352 (453)
.|.+... ....+--++.++.=.++|.++||..+|++--|||.+..+.....+..+++..++ . ...++..++.
T Consensus 43 ~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~ 122 (467)
T COG2211 43 FGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLL 122 (467)
T ss_pred cCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHH
Confidence 3555432 356667788888899999999999888888899999887777777666665543 1 2355677888
Q ss_pred Hhhhhhhc----chhHHHHHH
Q 012908 353 GLGYGAHW----AIVPAAASE 369 (453)
Q Consensus 353 G~~yG~~~----~~~p~i~s~ 369 (453)
+++|-... ++.|.+|.|
T Consensus 123 ~l~YT~vniPy~al~~~iT~d 143 (467)
T COG2211 123 GLGYTLVNIPYGALGPEITQD 143 (467)
T ss_pred HHHHHheeCchhhcchhhcCC
Confidence 88887753 445555543
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=87.05 E-value=12 Score=36.73 Aligned_cols=130 Identities=18% Similarity=0.251 Sum_probs=64.4
Q ss_pred HHHHhhccccceeecc--hHHHHHHhCCChhhH-HHH-HHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHH
Q 012908 258 FSLLLGSGSGLTVIDN--LGQMSQSLGYDNTHI-FVS-MISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIG 333 (453)
Q Consensus 258 ~~~~~~~g~gl~~i~n--~~~i~~alg~~~~~~-~Vs-l~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~ 333 (453)
..+.+...+|..|... ..++-+.+|++..+. .++ .-.++..+| +.+|.+.|+.+ || ..+.+..+...+|
T Consensus 7 a~~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~g-----p~-~~l~iG~~~~~~G 79 (250)
T PF06813_consen 7 ASIWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFG-----PW-VVLLIGAVLGFVG 79 (250)
T ss_pred HHHHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcc-----hH-HHHHHHHHHHHHH
Confidence 3444455666665543 345555678886543 222 334455566 78899999763 22 3345666666777
Q ss_pred HHHH--hccC--c-hhHHHHHHHHHhh-hhhhcchhHHH--HHHhhcccchhhhhhhHhhhhhhHhhhhc
Q 012908 334 HIFL--GMGW--P-GAMYVGTLLIGLG-YGAHWAIVPAA--ASELFGLKKFGALYNFLTLANPAGSIFTS 395 (453)
Q Consensus 334 ~ll~--~~~~--~-~~l~~~~~liG~~-yG~~~~~~p~i--~s~~FG~k~fg~~yg~~~la~~ig~~l~~ 395 (453)
..++ .... + ..++...+...++ .|..|--...+ ..+-|. +|=|+.=|++---.++++-+++
T Consensus 80 Y~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t 148 (250)
T PF06813_consen 80 YGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFT 148 (250)
T ss_pred HHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHH
Confidence 6553 2211 1 1222222322222 33333322322 335553 5556665655444444444444
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.03 E-value=0.94 Score=47.87 Aligned_cols=72 Identities=13% Similarity=0.219 Sum_probs=49.9
Q ss_pred CCHHHHhhcHHHHHHHHHHHhhccccceeecchHHHHHHhCCChh--hHHHHHHHHhhhhccccccchhhhhhh
Q 012908 242 FTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVR 313 (453)
Q Consensus 242 ~t~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~ 313 (453)
.+.++++++++|-++.+.+..+.|.=-...+.+-+...-.||+.. ...-.+.-++..+|-+.+|.+.||..+
T Consensus 257 ~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~ 330 (480)
T KOG2563|consen 257 KSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKK 330 (480)
T ss_pred HHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 367889999999999888866655533333344434444577742 224456667789999999999999855
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=84.34 E-value=11 Score=39.85 Aligned_cols=80 Identities=10% Similarity=-0.025 Sum_probs=49.3
Q ss_pred hCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhccC-c-----hhHHHHHHHH
Q 012908 281 LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGW-P-----GAMYVGTLLI 352 (453)
Q Consensus 281 lg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~~~-~-----~~l~~~~~li 352 (453)
+|.+... ....+--++.++-=.+.|+++||...|++--|||.+..+..+.....+++..+. + ..+.+...+.
T Consensus 40 ~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~ 119 (460)
T PRK11462 40 FGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLL 119 (460)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 4666542 356667778888888999999999887777889987655444443334443321 1 1233344455
Q ss_pred Hhhhhhhc
Q 012908 353 GLGYGAHW 360 (453)
Q Consensus 353 G~~yG~~~ 360 (453)
.++|-..-
T Consensus 120 ~~~~t~~~ 127 (460)
T PRK11462 120 TLLYTVVN 127 (460)
T ss_pred HHHHHHHh
Confidence 55555543
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=81.81 E-value=81 Score=34.05 Aligned_cols=146 Identities=13% Similarity=0.014 Sum_probs=79.4
Q ss_pred hHHHHHHHHhhhhccccccchhhhhhhccCCc-hhHHHHHHHHHHHHHHHHHh-----cc-----CchhHHHHHHHHHhh
Q 012908 287 HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYP-RPVAMAVAQFVMAIGHIFLG-----MG-----WPGAMYVGTLLIGLG 355 (453)
Q Consensus 287 ~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~-r~~~l~~~~~~~~~~~ll~~-----~~-----~~~~l~~~~~liG~~ 355 (453)
+.+-|+.+++-.+.-...+++-.++.|+++-| .|.=..+..+++.++.+.+. .+ ++.++.+..++..++
T Consensus 311 ~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~g 390 (493)
T PRK15462 311 AMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFA 390 (493)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHH
Confidence 33556766666555555555555664433322 33334555666666654432 11 123466677777888
Q ss_pred hhhhcchhHHHHHHhhcccchhhhhhhHhhh-hhhHhhh----hcCcCCCC-CCc---ccCCcccHHHHHHHHHHHHHH-
Q 012908 356 YGAHWAIVPAAASELFGLKKFGALYNFLTLA-NPAGSIF----TSMPRVDE-PLK---CEGSICYFLTSMIMSGLCIVA- 425 (453)
Q Consensus 356 yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la-~~ig~~l----~~~~~~~~-~~~---C~G~~Cy~~~f~i~~~~~~~~- 425 (453)
-=..-++--++++++--.|.-|.-.|.-+++ ..+|+.+ .+.....+ +.. -....-|..-|...+...++.
T Consensus 391 El~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 470 (493)
T PRK15462 391 ELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALACV 470 (493)
T ss_pred HHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHHH
Confidence 7788888889999997766667777775553 2455444 33221110 000 001224777787776655544
Q ss_pred -HHHHHHH
Q 012908 426 -VILSMIL 432 (453)
Q Consensus 426 -~~l~l~l 432 (453)
+++-+|+
T Consensus 471 ~~~~~~~~ 478 (493)
T PRK15462 471 GVVLMIWL 478 (493)
T ss_pred HHHHHHHH
Confidence 3444443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 453 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.44 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.23 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.87 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.57 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.57 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 98.47 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 98.31 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.25 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.21 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.21 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.02 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.0 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 97.75 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 97.13 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=8.2e-13 Score=134.38 Aligned_cols=180 Identities=17% Similarity=0.117 Sum_probs=131.7
Q ss_pred HHHHhhcHHHHHHHHHHHhhccccceeecchHHHHHH-hCCChhh--HHHHHHHHhhhhccccccchhhhh--hhccCCc
Q 012908 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEII--VRDYAYP 318 (453)
Q Consensus 244 ~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~a-lg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l--~~~~~~~ 318 (453)
.++.++++.+|.+.+..++......++......+.++ +|.+... ...++.++++.+|+++.|+++||+ ++|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~---- 320 (451)
T 1pw4_A 245 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR---- 320 (451)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH----
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----
Confidence 4678899999999998888776666666666666666 6777643 478889999999999999999998 542
Q ss_pred hhHHHHHHHHHHHHHHHHHhcc---CchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----h-hhhhH
Q 012908 319 RPVAMAVAQFVMAIGHIFLGMG---WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----L-ANPAG 390 (453)
Q Consensus 319 r~~~l~~~~~~~~~~~ll~~~~---~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----l-a~~ig 390 (453)
...+....+..+++.+++... +...+.+...+.|++++..+.....++.|.+..++.|+.+|+.. + +..++
T Consensus 321 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~ 399 (451)
T 1pw4_A 321 -GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAA 399 (451)
T ss_dssp -HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHH
Confidence 222222223332555554433 23346678888999999999999999999999999999999974 5 66677
Q ss_pred hhhhcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012908 391 SIFTSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTT 437 (453)
Q Consensus 391 ~~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r~r 437 (453)
+.+.+. .+.. .|+.+|.+.+++++++.++.+++.++.+
T Consensus 400 ~~~~g~l~~~~---------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (451)
T 1pw4_A 400 SAIVGYTVDFF---------GWDGGFMVMIGGSILAVILLIVVMIGEK 438 (451)
T ss_dssp HHHHHHHHHSS---------CSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---------CcHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 776664 2221 2999999999999888887776654443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.1e-11 Score=122.38 Aligned_cols=164 Identities=8% Similarity=0.050 Sum_probs=115.3
Q ss_pred CHHHHhhcHHHHHHHHHHHhhccccceeecchHHH-HHHh-CCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCc
Q 012908 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQM-SQSL-GYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYP 318 (453)
Q Consensus 243 t~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i-~~al-g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~ 318 (453)
+.++.++++.+|...+..++..+...++....... .++. |.+... ...++..+.+.+||++.|+++||+++|+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~--- 326 (438)
T 3o7q_A 250 SLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK--- 326 (438)
T ss_dssp HHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH---
T ss_pred hHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH---
Confidence 34677889999999999999888777777788888 7775 877543 4788889999999999999999997642
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH---hhhhhhHhhhhc
Q 012908 319 RPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL---TLANPAGSIFTS 395 (453)
Q Consensus 319 r~~~l~~~~~~~~~~~ll~~~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~---~la~~ig~~l~~ 395 (453)
.+....++.+++.+++...+.....+...+.|+++|..++...+.+.|.++.+ -++.-++. .++..+++.+.+
T Consensus 327 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~g 402 (438)
T 3o7q_A 327 ---VLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVMTIIGGGIVTPVMG 402 (438)
T ss_dssp ---HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHHHTTHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHHHHHHHHHHHHHHHH
Confidence 23344445555555444444334455668999999999999999999999854 44444443 355566666655
Q ss_pred C-cCCCCCCcccCCcccHHHHHHHHHH
Q 012908 396 M-PRVDEPLKCEGSICYFLTSMIMSGL 421 (453)
Q Consensus 396 ~-~~~~~~~~C~G~~Cy~~~f~i~~~~ 421 (453)
. .+. .+.|+.+|.+.+..
T Consensus 403 ~l~~~--------~g~~~~~~~~~~~~ 421 (438)
T 3o7q_A 403 FVSDA--------AGNIPTAELIPALC 421 (438)
T ss_dssp HHHHH--------HTSSGGGGHHHHHH
T ss_pred HHHHH--------hcchHHHHHHHHHH
Confidence 4 221 12377777765433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.1e-08 Score=103.37 Aligned_cols=178 Identities=10% Similarity=0.031 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHhhccccceeecchHHHHHH-hCCC--hhhHHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHH
Q 012908 251 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYD--NTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 327 (453)
Q Consensus 251 ~~FWll~~~~~~~~g~gl~~i~n~~~i~~a-lg~~--~~~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~ 327 (453)
..+|.+++..++....-...........++ .+.+ ......++.++...++....|+++||++||+.. +.+.+.+..
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~-~~~~~~~~~ 361 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPS-SPTKFAVGL 361 (491)
T ss_dssp TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCC-chHHHHHHH
Confidence 334555544444333333334444445554 3443 234466778888888999999999999886432 233444455
Q ss_pred HHHHHHHHHHhc----------cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhh
Q 012908 328 FVMAIGHIFLGM----------GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIF 393 (453)
Q Consensus 328 ~~~~~~~ll~~~----------~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l 393 (453)
.+.+++.+++.. .+...+.+..++.|++.|..+.....++.|.+..++-|+..|+.. ++..+|+.+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~ 441 (491)
T 4aps_A 362 MFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQL 441 (491)
T ss_dssp HHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555443322 123356778899999999999999999999999998999888864 566666666
Q ss_pred hcCcCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012908 394 TSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 438 (453)
Q Consensus 394 ~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r~r~ 438 (453)
.+.... .-|...|.+.+++++++.++.+.+..+.|+
T Consensus 442 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 442 VTLYNA---------KSEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp GGGGGG---------SSTTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHhc---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554221 127778888888888877776665554444
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.4e-08 Score=98.12 Aligned_cols=142 Identities=15% Similarity=0.079 Sum_probs=94.7
Q ss_pred HHHHhhcHHHHHHHHHHHhhccccceeecchHHHHHH-hCCChh--hHHHHHHHHhhhhccccccchhhhhhhccCCchh
Q 012908 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (453)
Q Consensus 244 ~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~a-lg~~~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~ 320 (453)
.++.+|++++|.+.+..++.......+......+.++ .|.++. ....++.++...+|++..|.++||.++ |.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-----~~ 266 (375)
T 2gfp_A 192 YKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST-----LM 266 (375)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-----HH
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH
Confidence 3567889999999988887665555555555555555 565543 236777888889999999999988754 21
Q ss_pred HHHHHHHHHHHHHHH--HHhc---cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhhhhHhhh
Q 012908 321 VAMAVAQFVMAIGHI--FLGM---GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIF 393 (453)
Q Consensus 321 ~~l~~~~~~~~~~~l--l~~~---~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~ig~~l 393 (453)
.. .... ....+.. .+.. .+...+.+...+.|+++|..+......+.|.+. ++.|+..|+......+|..+
T Consensus 267 ~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~ 341 (375)
T 2gfp_A 267 WQ-SVIC-CLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGV 341 (375)
T ss_dssp HH-HHHH-HHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHC
T ss_pred HH-HHHH-HHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHH
Confidence 11 1111 1112211 1111 122345678889999999999999999999998 89999999976544444433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.2e-07 Score=94.45 Aligned_cols=170 Identities=14% Similarity=0.143 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHhhccccceeecchHHHHHH------hCCChhh--HHHHHHHHhhhhccccccchhhh-hhhccCCchhH
Q 012908 251 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQS------LGYDNTH--IFVSMISIWNFLGRVGGGYFSEI-IVRDYAYPRPV 321 (453)
Q Consensus 251 ~~FWll~~~~~~~~g~gl~~i~n~~~i~~a------lg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~-l~~~~~~~r~~ 321 (453)
+.+|.+++..++....-..+...+....++ +|.+..+ ...++..+...+|.+.+|.++|| ++||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~------ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP------ 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH------
Confidence 467888877776655544555555555554 6877654 48899999999999999999999 78752
Q ss_pred HHHHHHHHHHHHHHHHhcc-CchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccc--hhhhhhhH----hhhhhhHhhhh
Q 012908 322 AMAVAQFVMAIGHIFLGMG-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKK--FGALYNFL----TLANPAGSIFT 394 (453)
Q Consensus 322 ~l~~~~~~~~~~~ll~~~~-~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~--fg~~yg~~----~la~~ig~~l~ 394 (453)
.+.+..++.+++.+++... +...++++-++.|++.|..++..+++++|.|..++ -++.++.. .++..+|+.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 166 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence 3445556666666655443 44568889999999999999999999999999877 55555553 35555555554
Q ss_pred cC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHHHh
Q 012908 395 SM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHR 435 (453)
Q Consensus 395 ~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r 435 (453)
+. .+. ..|+.+|.+.+..++++.++.+....+
T Consensus 167 ~~l~~~---------~g~~~~f~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 167 GAAQEA---------AGYHVAFSLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp HHHHHH---------SCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhh---------hhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 43 111 139999999887777776665554433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=2.7e-07 Score=93.44 Aligned_cols=170 Identities=13% Similarity=0.087 Sum_probs=113.6
Q ss_pred hcHHHHHHHHHHHhhccccceeecchHHHHHHhCCChh--hHHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHH
Q 012908 249 IKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVA 326 (453)
Q Consensus 249 ~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~ 326 (453)
+.+.++.+++..++....-.++..-+..+.+++ .++. ....++..+...++.+.+|.++||++||+ .+.+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~------~l~~~ 98 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV------FLPAG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchH------HHHHH
Confidence 344455555555444333333333445555566 5543 34889999999999999999999998752 34555
Q ss_pred HHHHHHHHHHHhc-----cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcC-
Q 012908 327 QFVMAIGHIFLGM-----GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSM- 396 (453)
Q Consensus 327 ~~~~~~~~ll~~~-----~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~- 396 (453)
.++.+++.++... .+...++++-++.|++.|..+....++++|+|..|+-++..|+.. ++..+|+.+.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666655433 344568889999999999999999999999999899998888864 333444433322
Q ss_pred cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 012908 397 PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 433 (453)
Q Consensus 397 ~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~ 433 (453)
.+.. | .+|.+|++.+.++++..++..+..
T Consensus 179 ~~~~------g--~w~~~f~~~~~~~~~~~~~~~~~~ 207 (451)
T 1pw4_A 179 MAWF------N--DWHAALYMPAFCAILVALFAFAMM 207 (451)
T ss_dssp HHHT------C--CSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred HHHh------c--cHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1110 1 378888888887777666554443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=2.9e-06 Score=85.47 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=86.7
Q ss_pred hHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHH---hc-cCchhHHH
Q 012908 274 LGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFL---GM-GWPGAMYV 347 (453)
Q Consensus 274 ~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~---~~-~~~~~l~~ 347 (453)
..++.+++|.++.+ ...++..+...++.+.+|.++||++||+ .+.+..++.+++.++. .. .+...+++
T Consensus 49 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~------~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (438)
T 3o7q_A 49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA------GIITGLFLYALGAALFWPAAEIMNYTLFLV 122 (438)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHH------HHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchH------HHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 44566778888654 4889999999999999999999998852 3445555556665554 33 34456788
Q ss_pred HHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhc
Q 012908 348 GTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTS 395 (453)
Q Consensus 348 ~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~ 395 (453)
+-++.|++.|..+.....+++|.+..|+-++..|+.. ++..+|+.+.+
T Consensus 123 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 174 (438)
T 3o7q_A 123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999877777654 44445544433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2e-06 Score=87.48 Aligned_cols=172 Identities=10% Similarity=0.028 Sum_probs=108.7
Q ss_pred HHHHhhcHHHHHHHHHHHhhccccceee-cchHHHHHHh-CCC---hh--hHHHHHHHHhhhhccccccchhhhhhhccC
Q 012908 244 LTQALIKADFWLIFFSLLLGSGSGLTVI-DNLGQMSQSL-GYD---NT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYA 316 (453)
Q Consensus 244 ~~~~l~s~~FWll~~~~~~~~g~gl~~i-~n~~~i~~al-g~~---~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~ 316 (453)
.++.++++++|.+++..++.. ...... .......++. +.. .. ....++..+++.+|++..|+++||++||+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~- 290 (417)
T 2cfq_A 213 ALELFRQPKLWFLSLYVIGVS-CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN- 290 (417)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-
T ss_pred HHHHhcCCchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH-
Confidence 456788999998776644332 122211 1222333332 211 11 23566777888999999999999997742
Q ss_pred CchhHHHHHHHHHHHHHHHHHhcc-CchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH-h----hhhhhH
Q 012908 317 YPRPVAMAVAQFVMAIGHIFLGMG-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL-T----LANPAG 390 (453)
Q Consensus 317 ~~r~~~l~~~~~~~~~~~ll~~~~-~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~-~----la~~ig 390 (453)
.+....++++++.+++... +...+.+...+.+++++.........++|.+..+.-|+.+|+. . ++..+|
T Consensus 291 -----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~g 365 (417)
T 2cfq_A 291 -----ALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFM 365 (417)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHh
Confidence 2233444445555444432 3334555666778888877777788999999999999988874 3 556666
Q ss_pred hhhhcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 012908 391 SIFTSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 431 (453)
Q Consensus 391 ~~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~ 431 (453)
|.+.+. .+. . .|+..|.+.+++++++.++.+.
T Consensus 366 p~l~G~l~~~--------~-g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 366 SVLAGNMYES--------I-GFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp THHHHTHHHH--------S-HHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHh--------c-CcHHHHHHHHHHHHHHHHHHHh
Confidence 666654 221 1 2888999988888887766543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.21 E-value=6.9e-07 Score=88.62 Aligned_cols=158 Identities=9% Similarity=0.124 Sum_probs=106.1
Q ss_pred HHHHHHhhccccceeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHH
Q 012908 256 IFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIG 333 (453)
Q Consensus 256 l~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~ 333 (453)
+++..++......++......+.+++|.++.+ ...++..+...++.+.+|+++||++||+.. .....+.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~ 78 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI------LVGMSIFMLA 78 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH------HHHHHHHHHH
Confidence 33334333333333334455666778887654 488899999999999999999999886543 2333444444
Q ss_pred HHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcCcCCCCCCcccCC
Q 012908 334 HIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSMPRVDEPLKCEGS 408 (453)
Q Consensus 334 ~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~~~~~~~~~C~G~ 408 (453)
.++... .+...+++..++.|++.|..+.....+++|.+..|+.++..|... ++..+|+.+.+.... .
T Consensus 79 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~--------~ 150 (375)
T 2gfp_A 79 TLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT--------M 150 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC--------H
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------h
Confidence 443332 334467788999999999999999999999999999888888864 344444444332111 1
Q ss_pred cccHHHHHHHHHHHHHHHH
Q 012908 409 ICYFLTSMIMSGLCIVAVI 427 (453)
Q Consensus 409 ~Cy~~~f~i~~~~~~~~~~ 427 (453)
..++.+|.+.+.++++..+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 151 WNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 1388888888777665554
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.1e-06 Score=87.94 Aligned_cols=167 Identities=16% Similarity=0.144 Sum_probs=112.5
Q ss_pred cHHHHHHHHHHHhhccccceeecchHHHH-HHhC------CChhh--HHHHHHHHhhhhccccccchhhhh-hhccCCch
Q 012908 250 KADFWLIFFSLLLGSGSGLTVIDNLGQMS-QSLG------YDNTH--IFVSMISIWNFLGRVGGGYFSEII-VRDYAYPR 319 (453)
Q Consensus 250 s~~FWll~~~~~~~~g~gl~~i~n~~~i~-~alg------~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l-~~~~~~~r 319 (453)
++.+|.+++..++....-.++...+.... +++| .+..+ ...++..+...++.+.+|.++||+ +||+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~---- 86 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN---- 86 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH----
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH----
Confidence 45677777777666555444455555444 4577 66543 488899999999999999999998 7742
Q ss_pred hHHHHHHHHHHHHHHHHHhc-c-CchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhh---hhhh----HhhhhhhH
Q 012908 320 PVAMAVAQFVMAIGHIFLGM-G-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGA---LYNF----LTLANPAG 390 (453)
Q Consensus 320 ~~~l~~~~~~~~~~~ll~~~-~-~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~---~yg~----~~la~~ig 390 (453)
.+.+..++.+++.+++.. . +...++++.++.|++.|..+...+++++|.|..++-++ .+|+ ..++..+|
T Consensus 87 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g 164 (524)
T 2xut_A 87 --TILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFA 164 (524)
T ss_dssp --HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 234445555555555443 3 44567788999999999999999999999999877643 3333 34666666
Q ss_pred hhhhcCcCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHH
Q 012908 391 SIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSM 430 (453)
Q Consensus 391 ~~l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l 430 (453)
+.+.+.... ...++.+|.+.+.+.+++.++.+
T Consensus 165 ~~~~~~l~~--------~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 165 SLSMPLLLK--------NFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHTSTHHHH--------TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc--------cccHHHHHHHHHHHHHHHHHHHH
Confidence 655443110 12389999988877666555443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00014 Score=74.37 Aligned_cols=182 Identities=16% Similarity=0.096 Sum_probs=95.2
Q ss_pred hcHHHHHHHHHHHhhccccceeecc-hHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHH
Q 012908 249 IKADFWLIFFSLLLGSGSGLTVIDN-LGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAV 325 (453)
Q Consensus 249 ~s~~FWll~~~~~~~~g~gl~~i~n-~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~ 325 (453)
+.+..+.......+....|...+.. ...+.+..+.+... ....+.++.+..+-++++++.||++||+.. ..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~------~~ 347 (491)
T 4gc0_A 274 GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ------II 347 (491)
T ss_dssp CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHH------HH
T ss_pred cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchh------cc
Confidence 3344444444444444444443333 33455566666543 355677888999999999999999885321 22
Q ss_pred HHHHHHHHHHHH----hccCchh-HHHHHHHHHhhhhhhcc-hhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhc
Q 012908 326 AQFVMAIGHIFL----GMGWPGA-MYVGTLLIGLGYGAHWA-IVPAAASELFGLKKFGALYNFLT----LANPAGSIFTS 395 (453)
Q Consensus 326 ~~~~~~~~~ll~----~~~~~~~-l~~~~~liG~~yG~~~~-~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~ 395 (453)
....++++.+.+ ....+.. ..+...+...+++..++ +...+++|.|..+.=++-.|+.. ++..++++++.
T Consensus 348 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p 427 (491)
T 4gc0_A 348 GALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFP 427 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred chHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222221 1222222 22333444445555554 34478899999887677666653 34444444332
Q ss_pred CcCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012908 396 MPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 438 (453)
Q Consensus 396 ~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r~r~ 438 (453)
....... -...-....+|++.+++++++.+....+.-.||.
T Consensus 428 ~l~~~~~--~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 428 MMDKNSW--LVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHCHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHH--HHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 1000000 0001123457888888888888877665544543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.00 E-value=4.9e-05 Score=78.75 Aligned_cols=113 Identities=13% Similarity=0.022 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHhcc----------CchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhh
Q 012908 323 MAVAQFVMAIGHIFLGMG----------WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANP 388 (453)
Q Consensus 323 l~~~~~~~~~~~ll~~~~----------~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ 388 (453)
+.+..++++++.+++... +...+.+..++.|+++|........++.|.+..++-|+-.|+.. ++..
T Consensus 376 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ 455 (524)
T 2xut_A 376 MGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNL 455 (524)
T ss_dssp HHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHH
Confidence 344555555665544331 22346678899999999999999999999999999999888864 5666
Q ss_pred hHhhhhcCcCCCCCCc-----ccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012908 389 AGSIFTSMPRVDEPLK-----CEGSICYFLTSMIMSGLCIVAVILSMILVHRTT 437 (453)
Q Consensus 389 ig~~l~~~~~~~~~~~-----C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r~r 437 (453)
+|+.+.+......... -.+. .+..|.+.+++++++.++.+++..+++
T Consensus 456 ~g~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (524)
T 2xut_A 456 WVLLANVSVKSPTVTEQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQ 507 (524)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHhcccccccccccccccc--cccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666665421100000 0000 133477777777777776665554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=8.4e-05 Score=76.12 Aligned_cols=98 Identities=22% Similarity=0.273 Sum_probs=75.2
Q ss_pred HHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHh-------------------ccCchhHHHHH
Q 012908 289 FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-------------------MGWPGAMYVGT 349 (453)
Q Consensus 289 ~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~-------------------~~~~~~l~~~~ 349 (453)
.+|.+.++..+|-+++|+++||++||+ .+.+..+++.++.++.+ ..+...+.++=
T Consensus 60 ~~s~~~~G~~iG~~~~G~laDr~GRk~------~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R 133 (491)
T 4gc0_A 60 CVASALIGCIIGGALGGYCSNRFGRRD------SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYR 133 (491)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHTCHHH------HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHH
Confidence 677888899999999999999999963 33455555555554433 22334688899
Q ss_pred HHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhhhhHhh
Q 012908 350 LLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSI 392 (453)
Q Consensus 350 ~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~ig~~ 392 (453)
++.|++.|+...+.|.+++|+...++-|...++...+..+|..
T Consensus 134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~ 176 (491)
T 4gc0_A 134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQL 176 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhh
Confidence 9999999999999999999999998888887776655544443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00014 Score=73.71 Aligned_cols=69 Identities=13% Similarity=0.073 Sum_probs=52.0
Q ss_pred HhhcHHHHHHHHHHHhhccccceeecchHHHHHH-hCCChhh--HHHHHHHHhhhhccccccchhhhhhhcc
Q 012908 247 ALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDY 315 (453)
Q Consensus 247 ~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~a-lg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~ 315 (453)
.+|+++||.+....++....-.++..-+....++ +|.++.+ ..+++..+...+|++.+|.++||++||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~ 74 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK 74 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCC
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 5789999999887766544433444445554554 6877543 4889999999999999999999999863
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 453 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.45 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 98.56 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 98.55 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 97.81 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=1.7e-13 Score=135.89 Aligned_cols=191 Identities=17% Similarity=0.124 Sum_probs=128.7
Q ss_pred CHHHHhhcHHHHHHHHHHHhhccccceeecchHHHHHH-hCCChh--hHHHHHHHHhhhhccccccchhhhhhhccCCch
Q 012908 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 319 (453)
Q Consensus 243 t~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~a-lg~~~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r 319 (453)
..++.++++.+|.+....++.......+........++ .+.+.. ....++..+.+.+|++++|+++||+.|+.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-- 318 (447)
T d1pw4a_ 241 FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG-- 318 (447)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH--
T ss_pred HHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccc--
Confidence 45667899999999988888766665555544444443 455543 3488899999999999999999999775322
Q ss_pred hHHHHHHHHHHHHHHHHHhc---cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----h-hhhhHh
Q 012908 320 PVAMAVAQFVMAIGHIFLGM---GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----L-ANPAGS 391 (453)
Q Consensus 320 ~~~l~~~~~~~~~~~ll~~~---~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----l-a~~ig~ 391 (453)
........+..++.+++.. .++....+..+++|++.++........+.|.++.+..|+-.|+.. + +..+++
T Consensus 319 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~ 397 (447)
T d1pw4a_ 319 -ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAAS 397 (447)
T ss_dssp -HHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222233333222 223345667788899999999999999999999999999988863 2 233445
Q ss_pred hhhcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 012908 392 IFTSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYG 445 (453)
Q Consensus 392 ~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r~r~~y~~~~~ 445 (453)
++.+. .+.. .|+..|.+..+.++++.++...+..+++|..+++.+
T Consensus 398 ~~~g~~~~~~---------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 443 (447)
T d1pw4a_ 398 AIVGYTVDFF---------GWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQ 443 (447)
T ss_dssp HHHHHHHHSS---------CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHh---------ChHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 55443 2221 278899999888888888777776666554444433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=98.56 E-value=3.9e-07 Score=86.58 Aligned_cols=135 Identities=10% Similarity=-0.044 Sum_probs=100.4
Q ss_pred HHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHHH
Q 012908 289 FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAA 367 (453)
Q Consensus 289 ~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~ 367 (453)
..+...+...+++...|.+.||.+++ ..+.+..++++++.+++.. .+...+++..++.|+++|..+.....++
T Consensus 264 ~~~~~~~~~~~~~~~~~~l~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 337 (417)
T d1pv7a_ 264 VTTMGELLNASIMFFAPLIINRIGGK------NALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHCHH------HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhhhhhhcccccc------cchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888999999999988663 2334455555555555444 3445677788999999999999999999
Q ss_pred HHhhcccchhhhhhhH-h----hhhhhHhhhhcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012908 368 SELFGLKKFGALYNFL-T----LANPAGSIFTSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 438 (453)
Q Consensus 368 s~~FG~k~fg~~yg~~-~----la~~ig~~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r~r~ 438 (453)
.|.+..++-|+.+|+. . ++..+|+.+.+. .|.. -|+.+|++.+++++++.++.+++.++.|+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~---------g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (417)
T d1pv7a_ 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI---------GFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH---------CHHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------CHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 9999999999988864 2 455667766654 2221 28899999999988888888777765554
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=98.55 E-value=7.2e-08 Score=94.44 Aligned_cols=167 Identities=15% Similarity=0.176 Sum_probs=109.0
Q ss_pred HHHHHHHHHhhccccce---eecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHH
Q 012908 253 FWLIFFSLLLGSGSGLT---VIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 327 (453)
Q Consensus 253 FWll~~~~~~~~g~gl~---~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~ 327 (453)
-|.+++..+++.....+ .++.+.+..+++|.++.+ ...+++.+...+|.+.+|.++||++||+ .+.+..
T Consensus 23 ~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~------~~~~~~ 96 (447)
T d1pw4a_ 23 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV------FLPAGL 96 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH------HHHHHH
Confidence 35566655555443332 233344455567777654 4889999999999999999999998853 334444
Q ss_pred HHHHHHHHHHhc-----cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhhhhH----hhhhcC-c
Q 012908 328 FVMAIGHIFLGM-----GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAG----SIFTSM-P 397 (453)
Q Consensus 328 ~~~~~~~ll~~~-----~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~ig----~~l~~~-~ 397 (453)
++.+++.++... .....+.+.-++.|++.|..+.....+++|+|..|+-|+..|+...+..+| +.+... .
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~ 176 (447)
T d1pw4a_ 97 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 176 (447)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHh
Confidence 444455444322 234467888899999999999999999999999999999998875444433 332221 1
Q ss_pred CCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 012908 398 RVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 433 (453)
Q Consensus 398 ~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~ 433 (453)
.. ..-++..|.+.+.++++..++.+.+.
T Consensus 177 ~~--------~~~w~~~~~~~~~~~~~~~~~~~~~~ 204 (447)
T d1pw4a_ 177 AW--------FNDWHAALYMPAFCAILVALFAFAMM 204 (447)
T ss_dssp HH--------TCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred hh--------hhcccccchhhhhhHHHHHHHHHHhc
Confidence 10 11256667777766665555544443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=97.81 E-value=1.4e-05 Score=75.43 Aligned_cols=69 Identities=12% Similarity=0.039 Sum_probs=51.2
Q ss_pred HhhcHHHHHHHHHHHhhccccceeecchHHHH-HHhCCChhhH--HHHHHHHhhhhccccccchhhhhhhcc
Q 012908 247 ALIKADFWLIFFSLLLGSGSGLTVIDNLGQMS-QSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDY 315 (453)
Q Consensus 247 ~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~-~alg~~~~~~--~Vsl~si~n~~GRl~~G~lsD~l~~~~ 315 (453)
-+|+++||.+.+.+++....--++..-+.... +++|.++.+. ..++..+...++.+.+|.++||++||+
T Consensus 3 ~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~ 74 (417)
T d1pv7a_ 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK 74 (417)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCT
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH
Confidence 47999999998877765333223333344333 4578887654 889999999999999999999999863
|