Citrus Sinensis ID: 012935

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450---
MEEDIDGDIEDIEALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAVTDMRKLANRMLFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSVGQSKLAAKVAKRFKEKSYGSSGATSGLTSSLAFTPVQGIELSNPQAHAHQLGGGTQSTYFSETGTFSKIKKT
ccccccccHHHHHHcccccHHHHHHHHccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccHHHHHHHHHHcHHHHHHccccccHHHHHHcccccccccccccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHcccccccHHHHHHcccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHHHHccccccccccHHHHcccccccEEEEccHHHHcccccccccccccccccEEEEccc
ccccccccHHHHHHcccccHHHHHHHcccHHHHHHHHHHHHHHcccccccccEEEccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHcccHcccHccHHHHccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccEEEEEEcHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHccccccccccccccccccEEEEccccHHHHHHHHHHHHHccccccccccccccEEEEcccccEEEEcHHHHHHHHccHHHccHccccccEEEEEcc
meedidgdiediealnyddldnvskLQKSQRFTDIMQKVEAALQngsdisnhgmvleddpeyqlivdcnvlsvdiENEIVIIHNFIrdkyrlkfpeleslvhhpiDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTasttsgkplpedvLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLgakkknlagfstATSQFRVGYLEQteifqstppplRMRACRLLAAKSTLAArvdstrgdpsgtagrSFREEIHKKIEkwqepppakqpkplpvpdsepkkkrggrrLRKMKERYAVTDMRKLANRMlfgvpeesslgdglgegygmlgqagsgklrvSVGQSKLAAKVAKRFkeksygssgatsgltsslaftpvqgielsnpqahahqlgggtqstyfsetgtfskikkt
meedidgdiediealnyddldnvSKLQKSQRFTDIMQKVEAAlqngsdisnHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTasttsgkplpedVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEifqstpppLRMRACRLLAAKStlaarvdstrgdpsgtagrsFREEIHKKiekwqepppakqpkplpvpdsepkkkrggrrlrkmkeryavtdmrKLANRMLFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSVGQSKLAAKVAKrfkeksygssgatsgltsSLAFTPVQGIELSNPQAHAHQLgggtqstyfsetgtfskikkt
MeedidgdiedieALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTIdacdralaldaakkkvldFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEpppakqpkplpvpDSEPkkkrggrrlrkmkerYAVTDMRKLANRMLFGVPEESSlgdglgegygmlgqagSGKLRVSVGQSKLAAKVAKRFKEKSYgssgatsgltsslaFTPVQGIELSNPQAHAHQLGGGTQSTYFSETGTFSKIKKT
****************Y*****************I***************NHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAA****************************************************************************LANRMLFG******************************************************************************************************
***********IEALNYDDLDNVSKLQKSQRFTDIMQ***********************EYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIM************PLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLL***************QFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKI*************************************************************DGLGEGYGM********************************************AFTPVQGIEL********************ETGTFSKIK**
MEEDIDGDIEDIEALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKST*****************RSFREEIHKKIEKWQE*************************LRKMKERYAVTDMRKLANRMLFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSVGQSKLAAKVA**************SGLTSSLAFTPVQGIELSNPQAHAHQLGGGTQSTYFSETG********
*****DGDIEDIEALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEPPPAKQPKPLPVPDSE****R*GRRLRKMKERYAVTDMRKLANRMLFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSVGQSKLAAKVAKRFKEK**********LTSSLAFTPVQGIELSNPQAHAHQLGG***ST*FSETGTFSKI***
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MEEDIDGDIEDIEALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAVTDMRKLANRMLFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSVGQSKLAAKVAKRFKEKSYGSSGATSGLTSSLAFTPVQGIELSNPQAHAHQLGGGTQSTYFSETGTFSKIKKT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query453 2.2.26 [Sep-21-2011]
Q8CCF0499 U4/U6 small nuclear ribon yes no 0.975 0.885 0.473 1e-109
Q5U5C5498 U4/U6 small nuclear ribon N/A no 0.982 0.893 0.469 1e-108
Q6NVP6498 U4/U6 small nuclear ribon yes no 0.982 0.893 0.463 1e-106
Q8WWY3499 U4/U6 small nuclear ribon yes no 0.975 0.885 0.476 1e-106
Q7SXM7508 U4/U6 small nuclear ribon yes no 0.986 0.879 0.459 1e-105
O42904518 Pre-mRNA-processing facto yes no 0.949 0.830 0.428 1e-83
P49704494 Pre-mRNA-processing facto yes no 0.708 0.649 0.334 1e-42
Q4PBF2582 Nucleolar protein 58 OS=U N/A no 0.505 0.393 0.275 4e-25
Q9P7S7508 Nucleolar protein 58 OS=S no no 0.578 0.515 0.277 1e-24
P0CP26568 Nucleolar protein 58 OS=C no no 0.512 0.408 0.280 2e-24
>sp|Q8CCF0|PRP31_MOUSE U4/U6 small nuclear ribonucleoprotein Prp31 OS=Mus musculus GN=Prpf31 PE=2 SV=3 Back     alignment and function desciption
 Score =  395 bits (1014), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/460 (47%), Positives = 305/460 (66%), Gaps = 18/460 (3%)

Query: 9   IEDIEA-----LNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQ 63
           IED++      L+ D + +++KL  S+ F +IM K+E  +   +++S     +E  PEY+
Sbjct: 32  IEDVQEETQLDLSGDSVKSIAKLWDSKMFAEIMMKIEEYISKQANVSEVMGPVEAAPEYR 91

Query: 64  LIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTL- 122
           +IVD N L+V+IENE+ IIH FIRDKY  +FPELESLV + +DY R VK++GN +D    
Sbjct: 92  VIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKN 151

Query: 123 -VDLEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESR 181
             +L+ +L +A IMVVSVTASTT G+ L ++ L++  +ACD AL L+A+K ++ ++VESR
Sbjct: 152 NENLQQILTNATIMVVSVTASTTQGQQLSDEELERLEEACDMALELNASKHRIYEYVESR 211

Query: 182 MSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRV 241
           MS+IAPNLS I+G++ AAK+MG AGGL+ L+KMPACN+ LLGA++K L+GFS+ +     
Sbjct: 212 MSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHT 271

Query: 242 GYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKW 301
           GY+  ++I QS PP LR +A RL+AAK TLAARVDS      G  G   ++EI +K +KW
Sbjct: 272 GYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKW 331

Query: 302 QEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAVTDMRKLANRMLFGVPEESSLGDG 361
           QEPPP KQ KPLP P    +KKRGGRR RKMKER  +T++RK ANRM FG  EE +  + 
Sbjct: 332 QEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRKQANRMSFGEIEEDAYQED 391

Query: 362 LGEGYGMLGQAGSGKLRVSVGQSKLAAKVAKRFKEK------SYGSSGA----TSGLTSS 411
           LG   G LG++GSG++R +       A+++K  +         YG        +SG  SS
Sbjct: 392 LGFSLGHLGKSGSGRVRQTQVNEATKARISKTLQRTLQKQSVVYGGKSTIRDRSSGTASS 451

Query: 412 LAFTPVQGIELSNPQAHAHQLGGGTQSTYFSETGTFSKIK 451
           +AFTP+QG+E+ NPQA   ++    Q  YFS    F K+K
Sbjct: 452 VAFTPLQGLEIVNPQAAEKKVAEANQK-YFSSMAEFLKVK 490
Involved in pre-mRNA splicing. Required for U4/U6.U5 tri-snRNP formation.
Mus musculus (taxid: 10090)
>sp|Q5U5C5|PRP31_XENLA U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus laevis GN=prpf31 PE=2 SV=1 Back     alignment and function description
>sp|Q6NVP6|PRP31_XENTR U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus tropicalis GN=prpf31 PE=2 SV=1 Back     alignment and function description
>sp|Q8WWY3|PRP31_HUMAN U4/U6 small nuclear ribonucleoprotein Prp31 OS=Homo sapiens GN=PRPF31 PE=1 SV=2 Back     alignment and function description
>sp|Q7SXM7|PRP31_DANRE U4/U6 small nuclear ribonucleoprotein Prp31 OS=Danio rerio GN=prpf31 PE=2 SV=1 Back     alignment and function description
>sp|O42904|PRP31_SCHPO Pre-mRNA-processing factor 31 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp31 PE=3 SV=1 Back     alignment and function description
>sp|P49704|PRP31_YEAST Pre-mRNA-processing factor 31 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP31 PE=1 SV=2 Back     alignment and function description
>sp|Q4PBF2|NOP58_USTMA Nucleolar protein 58 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=NOP58 PE=3 SV=1 Back     alignment and function description
>sp|Q9P7S7|NOP58_SCHPO Nucleolar protein 58 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nop58 PE=1 SV=1 Back     alignment and function description
>sp|P0CP26|NOP58_CRYNJ Nucleolar protein 58 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=NOP58 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query453
224064342486 predicted protein [Populus trichocarpa] 1.0 0.932 0.905 0.0
296086542523 unnamed protein product [Vitis vinifera] 1.0 0.866 0.911 0.0
225424693489 PREDICTED: U4/U6 small nuclear ribonucle 1.0 0.926 0.911 0.0
224128007483 predicted protein [Populus trichocarpa] 0.997 0.935 0.898 0.0
356571467486 PREDICTED: U4/U6 small nuclear ribonucle 1.0 0.932 0.892 0.0
356558773486 PREDICTED: U4/U6 small nuclear ribonucle 1.0 0.932 0.892 0.0
124359772484 Pre-mRNA processing ribonucleoprotein, b 0.984 0.921 0.894 0.0
449435390476 PREDICTED: U4/U6 small nuclear ribonucle 1.0 0.951 0.880 0.0
449526411484 PREDICTED: LOW QUALITY PROTEIN: U4/U6 sm 1.0 0.935 0.878 0.0
255568742 774 U4/U6 small nuclear ribonucleoprotein Pr 0.938 0.549 0.908 0.0
>gi|224064342|ref|XP_002301428.1| predicted protein [Populus trichocarpa] gi|222843154|gb|EEE80701.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  862 bits (2228), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/453 (90%), Positives = 436/453 (96%)

Query: 1   MEEDIDGDIEDIEALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDP 60
           MEED+DGD+ DIEALNYDDLD+VSKLQK+QRF DIMQKVE ALQ GSD+ +HGMVLEDDP
Sbjct: 34  MEEDVDGDLADIEALNYDDLDSVSKLQKTQRFNDIMQKVEDALQKGSDVQDHGMVLEDDP 93

Query: 61  EYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDL 120
           EYQLIV+CN LSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDL
Sbjct: 94  EYQLIVNCNALSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDL 153

Query: 121 TLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVES 180
           TLVD+EGL+P+AI MV+SVTASTTSGKPLPE+VLQKTIDAC+RALALD+AKKKVLDFVE+
Sbjct: 154 TLVDMEGLIPAAIRMVISVTASTTSGKPLPEEVLQKTIDACNRALALDSAKKKVLDFVET 213

Query: 181 RMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFR 240
           RM YIAPNLSAIVGSAVAAKLMG AGGL+ALAKMPACNVQLLGAKKKNLAGFSTATSQFR
Sbjct: 214 RMGYIAPNLSAIVGSAVAAKLMGMAGGLTALAKMPACNVQLLGAKKKNLAGFSTATSQFR 273

Query: 241 VGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEK 300
           VGY+EQTE+FQSTPP LRMRA RLLAAKSTLAARVDSTRGDPSG  GR+ REEIHKKIEK
Sbjct: 274 VGYIEQTEVFQSTPPSLRMRAGRLLAAKSTLAARVDSTRGDPSGNTGRTLREEIHKKIEK 333

Query: 301 WQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAVTDMRKLANRMLFGVPEESSLGD 360
           WQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYA+TDMRKLANRM FGVPEESSLGD
Sbjct: 334 WQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAITDMRKLANRMQFGVPEESSLGD 393

Query: 361 GLGEGYGMLGQAGSGKLRVSVGQSKLAAKVAKRFKEKSYGSSGATSGLTSSLAFTPVQGI 420
           GLGEGYGMLGQAG+GKLRVS+GQSKLAAKVAK+FKEK+YGSSGATSGLTSSLAFTPVQGI
Sbjct: 394 GLGEGYGMLGQAGNGKLRVSIGQSKLAAKVAKKFKEKNYGSSGATSGLTSSLAFTPVQGI 453

Query: 421 ELSNPQAHAHQLGGGTQSTYFSETGTFSKIKKT 453
           EL+NPQAHAHQLG GTQSTYFSE GTFSKIK+T
Sbjct: 454 ELTNPQAHAHQLGSGTQSTYFSENGTFSKIKRT 486

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296086542|emb|CBI32131.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225424693|ref|XP_002263653.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224128007|ref|XP_002320218.1| predicted protein [Populus trichocarpa] gi|222860991|gb|EEE98533.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356571467|ref|XP_003553898.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31-like [Glycine max] Back     alignment and taxonomy information
>gi|356558773|ref|XP_003547677.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31-like [Glycine max] Back     alignment and taxonomy information
>gi|124359772|gb|ABN06098.1| Pre-mRNA processing ribonucleoprotein, binding region; NOSIC [Medicago truncatula] Back     alignment and taxonomy information
>gi|449435390|ref|XP_004135478.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449526411|ref|XP_004170207.1| PREDICTED: LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucleoprotein Prp31-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255568742|ref|XP_002525342.1| U4/U6 small nuclear ribonucleoprotein Prp31, putative [Ricinus communis] gi|223535305|gb|EEF36980.1| U4/U6 small nuclear ribonucleoprotein Prp31, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query453
TAIR|locus:2195698485 emb1220 "AT1G60170" [Arabidops 0.964 0.901 0.661 2.4e-138
MGI|MGI:1916238499 Prpf31 "PRP31 pre-mRNA process 0.637 0.579 0.474 5.9e-76
UNIPROTKB|E1BM48499 PRPF31 "Uncharacterized protei 0.637 0.579 0.477 1.2e-75
UNIPROTKB|F1PKI0499 PRPF31 "Uncharacterized protei 0.637 0.579 0.477 1.2e-75
UNIPROTKB|Q8WWY3499 PRPF31 "U4/U6 small nuclear ri 0.637 0.579 0.477 1.6e-75
UNIPROTKB|F1RNI3499 PRPF31 "Uncharacterized protei 0.637 0.579 0.474 2.5e-75
UNIPROTKB|Q5U5C5498 prpf31 "U4/U6 small nuclear ri 0.637 0.580 0.477 4.1e-75
UNIPROTKB|Q6NVP6498 prpf31 "U4/U6 small nuclear ri 0.637 0.580 0.470 7.6e-74
UNIPROTKB|E7EVX8493 PRPF31 "U4/U6 small nuclear ri 0.624 0.574 0.474 3.2e-73
ZFIN|ZDB-GENE-040426-1561508 prpf31 "PRP31 pre-mRNA process 0.631 0.562 0.461 4.7e-72
TAIR|locus:2195698 emb1220 "AT1G60170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1354 (481.7 bits), Expect = 2.4e-138, P = 2.4e-138
 Identities = 291/440 (66%), Positives = 314/440 (71%)

Query:    15 LNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVD 74
             LNYDDLDNVSKLQKSQR+ DIM KVE AL   SD +  G VLEDDPEY+LIVDCN LSVD
Sbjct:    46 LNYDDLDNVSKLQKSQRYADIMHKVEEALGKDSDGAEKGTVLEDDPEYKLIVDCNQLSVD 105

Query:    75 IENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAII 134
             IENEIVI+HNFI+DKY+LKF ELESLVHHPIDYA VVKKIGNE DL LVDL  LLPSAII
Sbjct:   106 IENEIVIVHNFIKDKYKLKFQELESLVHHPIDYACVVKKIGNETDLALVDLADLLPSAII 165

Query:   135 MVVSVTASTTSGKPLPEDVLQKTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVG 194
             MVVSVTA TT G  LPEDVLQK +                  FVES+M  IAPNLSAIVG
Sbjct:   166 MVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKMGSIAPNLSAIVG 225

Query:   195 SAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTP 254
             SAVAAKLMGTAGGLSALAKMPACNVQ+LG K+KNLAGFS+ATSQ RVGYLEQTEI+QSTP
Sbjct:   226 SAVAAKLMGTAGGLSALAKMPACNVQVLGHKRKNLAGFSSATSQSRVGYLEQTEIYQSTP 285

Query:   255 PPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEXXXXXXXXXXX 314
             P L+ RA RL+AAKSTLAARVD+TRGDP G +G++FREEI KKIEKWQE           
Sbjct:   286 PGLQARAGRLVAAKSTLAARVDATRGDPLGISGKAFREEIRKKIEKWQEPPPARQPKPLP 345

Query:   315 XXDSEPXXXXXXXXXXXXXXXYAVTDMRKLANRMLFGVPEESSXXXXXXXXXXXXXXXXS 374
               DSEP               Y VTDMRKLANRM FG PEESS                S
Sbjct:   346 VPDSEPKKRRGGRRLRKMKERYQVTDMRKLANRMAFGTPEESSLGDGLGEGYGMLGQAGS 405

Query:   375 GKLRVSVGQSKLA--AKVAKRFKEKSYXXXXXXXXXXXXXXFTPVQGIELSNPQAHAHQL 432
              +LRVS   SKL   AKVAK+ KE+ Y              FTPVQGIEL NPQ  A  L
Sbjct:   406 NRLRVSSVPSKLKINAKVAKKLKERQYAGGATTSGLTSSLAFTPVQGIELCNPQ-QALGL 464

Query:   433 GGGTQSTYFSETGTFSKIKK 452
             G GTQSTYFSE+GTFSK+KK
Sbjct:   465 GSGTQSTYFSESGTFSKLKK 484
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
MGI|MGI:1916238 Prpf31 "PRP31 pre-mRNA processing factor 31 homolog (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BM48 PRPF31 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PKI0 PRPF31 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q8WWY3 PRPF31 "U4/U6 small nuclear ribonucleoprotein Prp31" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RNI3 PRPF31 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q5U5C5 prpf31 "U4/U6 small nuclear ribonucleoprotein Prp31" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q6NVP6 prpf31 "U4/U6 small nuclear ribonucleoprotein Prp31" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|E7EVX8 PRPF31 "U4/U6 small nuclear ribonucleoprotein Prp31" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1561 prpf31 "PRP31 pre-mRNA processing factor 31 homolog (yeast)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7SXM7PRP31_DANRENo assigned EC number0.45920.98670.8799yesno
Q8CCF0PRP31_MOUSENo assigned EC number0.47390.97570.8857yesno
O42904PRP31_SCHPONo assigned EC number0.42820.94920.8301yesno
Q8WWY3PRP31_HUMANNo assigned EC number0.47600.97570.8857yesno
Q6NVP6PRP31_XENTRNo assigned EC number0.46350.98230.8935yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query453
COG1498395 COG1498, SIK1, Protein implicated in ribosomal bio 5e-63
pfam01798149 pfam01798, Nop, Putative snoRNA binding domain 1e-57
pfam09785124 pfam09785, Prp31_C, Prp31 C terminal domain 4e-50
PRK14552414 PRK14552, PRK14552, C/D box methylation guide ribo 5e-32
pfam0806052 pfam08060, NOSIC, NOSIC (NUC001) domain 1e-22
smart0093152 smart00931, NOSIC, NOSIC (NUC001) domain 2e-21
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  208 bits (532), Expect = 5e-63
 Identities = 110/293 (37%), Positives = 164/293 (55%), Gaps = 10/293 (3%)

Query: 57  EDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGN 116
           E D E +LI+       DI+ EI ++   +R+ Y   FPEL SLV     YA++V  +GN
Sbjct: 110 EVDKEDKLIIQAIEALDDIDKEINLLAMRLREWYGWHFPELSSLVPDNEQYAKLVSALGN 169

Query: 117 EMDLT---LVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKK 173
             ++    L DL   LP  I + ++  A  + G  L E+ +    +  +  L L   +++
Sbjct: 170 RENINKESLKDLGFALPD-IAIKIAEAAKDSMGADLSEEDIDNIRELAEIILELYELREQ 228

Query: 174 VLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFS 233
           + +++ES+MS IAPNL+A+VG  + A+L+  AGGL+ LAKMPA  +Q+LGA+K       
Sbjct: 229 LEEYIESKMSEIAPNLTALVGPVLGARLISHAGGLTRLAKMPASTIQVLGAEKALFRALK 288

Query: 234 TATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREE 293
           T     + G + Q+ + Q +PP  R +  R LAAK  +AAR+D+  G+P    G S REE
Sbjct: 289 TGAKTPKYGVIYQSPLIQKSPPWQRGKIARALAAKLAIAARIDAFSGEPD---GISLREE 345

Query: 294 IHKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAVTDMRKLAN 346
           + K+IEK +E PP    K  P  D   KK+R GR  RK KE+ A ++ R L N
Sbjct: 346 LEKRIEKLKEKPPKPPTKAKPERD---KKERPGRYRRKKKEKKAKSERRGLQN 395

Length = 395
>gnl|CDD|216709 pfam01798, Nop, Putative snoRNA binding domain Back     alignment and domain information
>gnl|CDD|220400 pfam09785, Prp31_C, Prp31 C terminal domain Back     alignment and domain information
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional Back     alignment and domain information
>gnl|CDD|203845 pfam08060, NOSIC, NOSIC (NUC001) domain Back     alignment and domain information
>gnl|CDD|197999 smart00931, NOSIC, NOSIC (NUC001) domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 453
KOG2574492 consensus mRNA splicing factor PRP31 [RNA processi 100.0
COG1498395 SIK1 Protein implicated in ribosomal biogenesis, N 100.0
PRK14552414 C/D box methylation guide ribonucleoprotein comple 100.0
KOG2573498 consensus Ribosome biogenesis protein - Nop56p/Sik 100.0
KOG2572498 consensus Ribosome biogenesis protein - Nop58p/Nop 100.0
PF01798150 Nop: Putative snoRNA binding domain; InterPro: IPR 100.0
PF09785124 Prp31_C: Prp31 C terminal domain; InterPro: IPR019 100.0
PF0806053 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 99.87
>KOG2574 consensus mRNA splicing factor PRP31 [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-151  Score=1144.82  Aligned_cols=446  Identities=59%  Similarity=0.912  Sum_probs=426.2

Q ss_pred             ccchHhhhhcCCcchhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHhhhhHHHHHHHHHHHHHH
Q 012935            6 DGDIEDIEALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNF   85 (453)
Q Consensus         6 ~~~~~~~~~~~~~~v~~va~l~~s~~~~~~l~~i~~~~~~~~~~~~~~~~~e~~pey~lIv~~n~L~~~Id~EI~~~h~~   85 (453)
                      +.++..+.++.++||+.|+||++|.+|.++|+++++|+.++.+..+..+++|++|||+|||+||+++++|||||+++|+|
T Consensus        38 ~a~~~~~~~l~~dsv~~v~kL~~S~r~~~im~q~E~~l~k~~d~~~i~~~~E~dpeykLIVd~n~iavdI~nEI~ivH~F  117 (492)
T KOG2574|consen   38 DAEMENLLTLTYDSVESVSKLAKSSRYRDIMQQTEEYLGKQVDAKEILGPVEADPEYKLIVDCNQIAVDIENEIVIVHNF  117 (492)
T ss_pred             cccccCchhhhhhhHHHHHHHHhccHHHHHHHHHHHHhcccchHHHhcCccccCcceeeeechhhhhhhhhhhHHHHHHH
Confidence            33445566778999999999999999999999999999999888889999999999999999999999999999999999


Q ss_pred             HHHHhhccCccccccccChHHHHHHHHHhcCCCCCCccccc--ccCChhHHHHHHHHhccCCCCCCCHHHHHHHHHHHHH
Q 012935           86 IRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLE--GLLPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDR  163 (453)
Q Consensus        86 iRd~Ys~~FPELeslv~~~~~Y~k~V~~ign~~dl~~~~L~--~iL~~~~imvisv~Asts~G~~Ls~~dl~~i~~ac~~  163 (453)
                      |||||+.|||||+|||++|++|+++|+.|||+.|...++|+  .+||+++||||+|||+||.|..|++++++.|.+||++
T Consensus       118 ikdkY~~RFpELeSLVp~~ldY~~~Vk~LgNelD~~~~~l~~~~~L~~atIMVvsvTasTT~G~~Lp~d~~~~v~eAc~~  197 (492)
T KOG2574|consen  118 IKDKYSKRFPELESLVPNPLDYAKVVKELGNELDLKKVDLELQAILPSATIMVVSVTASTTQGNKLPEDELEQVLEACEM  197 (492)
T ss_pred             HHHHHHhhhhhhHhhccCHHHHHHHHHHHhhhHHHHHhhhhhhccCccceEEEEEEEeeeccCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998888755  5999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccccCCCchhHhhchHHHHHHHHHhCCcchhcCCCchhhhhhhhhcccccccccCCCCCccce
Q 012935          164 ALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGY  243 (453)
Q Consensus       164 i~~L~~~r~~i~~yvesrM~~iAPNLsaLvG~~iaArLi~~AGgL~~LAkmPAcnIq~LGaeK~~~~g~st~~~~p~~G~  243 (453)
                      +++|+..|++|.+||+|||++||||||+|||+.+||+||++||||+.||+|||||||+||++|++++||++.+..||+||
T Consensus       198 a~~L~~~k~ki~eyVeSrms~IAPNLs~ivGs~taA~Lig~AGGls~Lsk~PaCNv~vlGk~kk~l~gfst~~~~~~~Gy  277 (492)
T KOG2574|consen  198 AEQLNKLKEKIYEYVESRMSFIAPNLSAIVGSTTAAKLIGIAGGLSELSKMPACNVQVLGKQKKTLIGFSTTSSLPHTGY  277 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccchhHhhhcHHHHHHHHHhhcCchhhccCCcchhhhhhccchhccccccccccCccce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCccccCCCchhhhhHHHHHHhHHHHHhhcccCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcc
Q 012935          244 LEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEPPPAKQPKPLPVPDSEPKKK  323 (453)
Q Consensus       244 Iy~s~lVq~~P~~~r~kaaR~lAaK~aLAARvD~~~~~~~g~~G~~lreei~~ki~Kl~epP~~k~~K~LP~P~d~~kkk  323 (453)
                      ||+|++||++||++|+||+|+|||||+||||||++|++++|.+|..||++|++||+||+||||++.+||||+|+|+||||
T Consensus       278 ly~s~ivQk~Ppdl~~ka~Rl~aAKvtLAARVDa~he~~~g~~g~~~k~evekK~eKl~EpPpvk~~KaLP~P~d~pkKk  357 (492)
T KOG2574|consen  278 LYASDIVQKTPPDLRKKAARLVAAKVTLAARVDAGHESPNGELGHEFKAEVEKKIEKLQEPPPVKQTKALPIPLDGPKKK  357 (492)
T ss_pred             eeHHhHhhhcCccHHHHHHHHHHHHHHHHHHhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCCcCCCCCCCCccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcchhHhHHHhhhhHHHHHhhccccCcccccccCCCcccccccccCCCCcceeeeccccchhHHHHHHhhh----ccc
Q 012935          324 RGGRRLRKMKERYAVTDMRKLANRMLFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSVGQSKLAAKVAKRFKE----KSY  399 (453)
Q Consensus       324 RGGrr~Rk~Ke~~~~telrk~~NRm~FG~~ee~~~~~~~~~glGmlg~~~~Gr~r~~~~~~~~~~k~~k~~~~----~~~  399 (453)
                      |||||+|||||||+|||+||+||||+||++||+++++++|+||||+|++|+||||.++++.+++++++|+|++    +++
T Consensus       358 RgGRR~RKmKEr~~lTe~RklaNRM~FG~~Ee~v~~~~~g~glGmlgksg~Grir~~~vd~~tkarisk~~~~~lq~~q~  437 (492)
T KOG2574|consen  358 RGGRRFRKMKERYALTELRKLANRMAFGKIEEDVLQEDLGEGLGMLGKSGSGRIRGSSVDEKTKARISKKMKKQLQEQQQ  437 (492)
T ss_pred             ccchHHHHHHHHhhhHHHHHHHhhhccCChhhhhhccccccccccccccCCCceeecccccchhhhhhHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999877777777777754    344


Q ss_pred             CCCCcccccccccccCCCCcccccCCchhhcccCCCCCCcccCCCCceeeccC
Q 012935          400 GSSGATSGLTSSLAFTPVQGIELSNPQAHAHQLGGGTQSTYFSETGTFSKIKK  452 (453)
Q Consensus       400 ~~~~~~~g~~sSlaftp~qg~el~nP~~~~~~~~~~~~~~~F~~~~~F~~~~~  452 (453)
                      .++-.++||+||++|||+||||||||++ ++++..+++++|||++|+|++|++
T Consensus       438 agg~ttsG~~ss~aftP~qglEivnp~~-~~~~~~e~~~~yFS~~g~F~~i~~  489 (492)
T KOG2574|consen  438 AGGFTTSGTASSVAFTPIQGLEIVNPQA-AEQQQPEENSKYFSSSGSFSKIKK  489 (492)
T ss_pred             hCCccccccccccccCcccchhhcCHHH-HhhcCcccccceecCCCceeeccc
Confidence            5567789999999999999999999998 666777889999999999999987

>COG1498 SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14552 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional Back     alignment and domain information
>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2572 consensus Ribosome biogenesis protein - Nop58p/Nop5p [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01798 Nop: Putative snoRNA binding domain; InterPro: IPR002687 This domain is present in various pre-mRNA processing ribonucleoproteins Back     alignment and domain information
>PF09785 Prp31_C: Prp31 C terminal domain; InterPro: IPR019175 This is the C-terminal domain of the pre-mRNA processing factor Prp31 Back     alignment and domain information
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query453
3siu_B254 Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Com 3e-65
2ozb_B260 Structure Of A Human Prp31-15.5k-U4 Snrna Complex L 4e-65
3nmu_A379 Crystal Structure Of Substrate-Bound Halfmer Box CD 2e-16
2nnw_A376 Alternative Conformations Of Nop56/58-fibrillarin C 2e-16
3nvk_A376 Structural Basis For Substrate Placement By An Arch 2e-16
3icx_A255 Crystal Structure Of Sulfolobus Solfataricus Nop5 ( 3e-16
3id5_A388 Crystal Structure Of Sulfolobus Solfataricus CD RNP 4e-16
3nvm_A371 Structural Basis For Substrate Placement By An Arch 4e-16
3gqu_A169 Pyrococcus Horikoshii Nop5 Rna Binding Domain Lengt 5e-12
1nt2_B258 Crystal Structure Of FibrillarinNOP5P COMPLEX Lengt 3e-08
>pdb|3SIU|B Chain B, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex, Monomeric Form Length = 254 Back     alignment and structure 
Iteration: 1

 Score =  245 bits (626), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 128/249 (51%), Positives = 170/249 (68%), Gaps = 2/249 (0%)
Query: 57  EDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGN 116
           E  PEY++IVD N L+V+IENE+ IIH FIRDKY  +FPELESLV + +DY R VK++GN
Sbjct: 6   EAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGN 65
Query: 117 EMDLTL--VDLEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTIXXXXXXXXXXXXXXXX 174
            +D      +L+ +L +A IMVVSVTASTT G+ L E+ L++                  
Sbjct: 66  SLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRI 125
Query: 175 XXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFST 234
             +VESRMS+IAPNLS I+G++ AAK+MG AGGL+ L+KMPACN+ LLGA++K L+GFS+
Sbjct: 126 YEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSS 185
Query: 235 ATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEI 294
            +     GY+  ++I QS PP LR +A RL+AAK TLAARVDS      G  G   ++EI
Sbjct: 186 TSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEI 245
Query: 295 HKKIEKWQE 303
            +K +KWQE
Sbjct: 246 ERKFDKWQE 254
>pdb|2OZB|B Chain B, Structure Of A Human Prp31-15.5k-U4 Snrna Complex Length = 260 Back     alignment and structure
>pdb|3NMU|A Chain A, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP Length = 379 Back     alignment and structure
>pdb|2NNW|A Chain A, Alternative Conformations Of Nop56/58-fibrillarin Complex And Implication For Induced-fit Assenly Of Box C/d Rnps Length = 376 Back     alignment and structure
>pdb|3NVK|A Chain A, Structural Basis For Substrate Placement By An Archaeal Box CD Ribonucleoprotein Particle Length = 376 Back     alignment and structure
>pdb|3ICX|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Nop5 (135-380) Length = 255 Back     alignment and structure
>pdb|3ID5|A Chain A, Crystal Structure Of Sulfolobus Solfataricus CD RNP ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half CD RNA Length = 388 Back     alignment and structure
>pdb|3NVM|A Chain A, Structural Basis For Substrate Placement By An Archaeal Box CD Ribonucleoprotein Particle Length = 371 Back     alignment and structure
>pdb|3GQU|A Chain A, Pyrococcus Horikoshii Nop5 Rna Binding Domain Length = 169 Back     alignment and structure
>pdb|1NT2|B Chain B, Crystal Structure Of FibrillarinNOP5P COMPLEX Length = 258 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query453
2ozb_B260 U4/U6 small nuclear ribonucleoprotein PRP31; RNA-p 4e-87
3icx_A255 PRE mRNA splicing protein; C/D guide RNA, 2'-O-met 6e-83
3pla_A388 NOP5, PRE mRNA splicing protein; RNA-binding, SAM, 5e-81
2nnw_A376 NOP5/NOP56 related protein; box C/D; 2.70A {Pyroco 2e-80
3gqu_A169 NOP5P protein; RNA binding domain, RNA binding pro 1e-57
1nt2_B258 Conserved hypothetical protein; adeMet, binding mo 9e-53
3id6_A268 NOP5, PRE mRNA splicing protein; C/D guide RNA, 2' 4e-39
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B Length = 260 Back     alignment and structure
 Score =  265 bits (679), Expect = 4e-87
 Identities = 136/250 (54%), Positives = 185/250 (74%), Gaps = 2/250 (0%)

Query: 56  LEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIG 115
           +E  PEY++IVD N L+V+IENE+ IIH FIRDKY  +FPELESLV + +DY R VK++G
Sbjct: 11  VEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELG 70

Query: 116 NEMDLT--LVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKK 173
           N +D      +L+ +L +A IMVVSVTASTT G+ L E+ L++  +ACD AL L+A+K +
Sbjct: 71  NSLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHR 130

Query: 174 VLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFS 233
           + ++VESRMS+IAPNLS I+G++ AAK+MG AGGL+ L+KMPACN+ LLGA++K L+GFS
Sbjct: 131 IYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFS 190

Query: 234 TATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREE 293
           + +     GY+  ++I QS PP LR +A RL+AAK TLAARVDS      G  G   ++E
Sbjct: 191 STSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDE 250

Query: 294 IHKKIEKWQE 303
           I +K +KWQE
Sbjct: 251 IERKFDKWQE 260
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus} Length = 255 Back     alignment and structure
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A* Length = 388 Back     alignment and structure
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A Length = 376 Back     alignment and structure
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B Length = 169 Back     alignment and structure
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: a.183.1.1 Length = 258 Back     alignment and structure
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} Length = 268 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query453
2ozb_B260 U4/U6 small nuclear ribonucleoprotein PRP31; RNA-p 100.0
3icx_A255 PRE mRNA splicing protein; C/D guide RNA, 2'-O-met 100.0
3pla_A388 NOP5, PRE mRNA splicing protein; RNA-binding, SAM, 100.0
2nnw_A376 NOP5/NOP56 related protein; box C/D; 2.70A {Pyroco 100.0
1nt2_B258 Conserved hypothetical protein; adeMet, binding mo 100.0
3gqu_A169 NOP5P protein; RNA binding domain, RNA binding pro 100.0
3id6_A268 NOP5, PRE mRNA splicing protein; C/D guide RNA, 2' 100.0
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B Back     alignment and structure
Probab=100.00  E-value=2.7e-88  Score=663.26  Aligned_cols=254  Identities=54%  Similarity=0.861  Sum_probs=233.7

Q ss_pred             CCCCCCCCCCcchhHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCccccccccChHHHHHHHHHhcCCCCCC--cccccc
Q 012935           50 SNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLT--LVDLEG  127 (453)
Q Consensus        50 ~~~~~~~e~~pey~lIv~~n~L~~~Id~EI~~~h~~iRd~Ys~~FPELeslv~~~~~Y~k~V~~ign~~dl~--~~~L~~  127 (453)
                      +...++++++|||++|+|||+|+++||+|||.+|+||||||+||||||++||+||++|+++|+.|||+.+++  ..+|.+
T Consensus         5 ~~~~~~~e~~~eY~~Ivqa~~lld~idkein~~~~rlre~Y~~~FPEL~~lv~~~~~Y~~~V~~ig~~~~~~~~~~~L~~   84 (260)
T 2ozb_B            5 SEVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQ   84 (260)
T ss_dssp             -------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHCCSHHHHHHHHHHHTTCGGGCTTCTTGGG
T ss_pred             ccccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccHHHHhcCHHHHHHHHHHhCCchhhccchHHHHH
Confidence            345688999999999999999999999999999999999999999999999999999999999999999876  456999


Q ss_pred             cCChhHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHhhchHHHHHHHHHhCC
Q 012935          128 LLPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGG  207 (453)
Q Consensus       128 iL~~~~imvisv~Asts~G~~Ls~~dl~~i~~ac~~i~~L~~~r~~i~~yvesrM~~iAPNLsaLvG~~iaArLi~~AGg  207 (453)
                      +|+++++|+|+++|++|+|.+||++|+.+|..+|+++++|+++|++|.+||++||..||||||+|||+.||||||++|||
T Consensus        85 iL~~~~~~~i~~aA~~S~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~~rM~~iAPNLtaLvG~~vaArLI~~AGs  164 (260)
T 2ozb_B           85 ILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGG  164 (260)
T ss_dssp             TSCHHHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhCcHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhcCCCchhhhhhhhhcccccccccCCCCCccceEeeCccccCCCchhhhhHHHHHHhHHHHHhhcccCCCCCCCchh
Q 012935          208 LSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAG  287 (453)
Q Consensus       208 L~~LAkmPAcnIq~LGaeK~~~~g~st~~~~p~~G~Iy~s~lVq~~P~~~r~kaaR~lAaK~aLAARvD~~~~~~~g~~G  287 (453)
                      |++||||||||||+|||+|++|+||++++.+|||||||||++||++||++||||+|+||+||+||||||+|+++++|.+|
T Consensus       165 L~~Lak~PastiqiLGaeKalf~~l~t~~~~pk~G~Iy~~~~V~~~p~~~rgk~~R~lA~K~alAaRiD~~~~~~~~~~G  244 (260)
T 2ozb_B          165 LTNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVG  244 (260)
T ss_dssp             HHHHHTSCHHHHTTTTCC----------CCCTTCCTTTTSHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHTTCSTTSHHH
T ss_pred             HHHHhhCCcHHHHHhcccHHHHHhhccCCCCCCeeeEeCCHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcC
Q 012935          288 RSFREEIHKKIEKWQE  303 (453)
Q Consensus       288 ~~lreei~~ki~Kl~e  303 (453)
                      .+||++|++||+||+|
T Consensus       245 ~~lr~~ie~rl~~~~e  260 (260)
T 2ozb_B          245 YELKDEIERKFDKWQE  260 (260)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            9999999999999987
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus} Back     alignment and structure
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A* Back     alignment and structure
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A Back     alignment and structure
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: a.183.1.1 Back     alignment and structure
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B Back     alignment and structure
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 453
d2ozbb1249 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucle 1e-100
d1nt2b_256 a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgi 4e-50
>d2ozbb1 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucleoprotein Prp31 {Human (Homo sapiens) [TaxId: 9606]} Length = 249 Back     information, alignment and structure

class: All alpha proteins
fold: Nop domain
superfamily: Nop domain
family: Nop domain
domain: U4/U6 small nuclear ribonucleoprotein Prp31
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  299 bits (766), Expect = e-100
 Identities = 136/249 (54%), Positives = 184/249 (73%), Gaps = 2/249 (0%)

Query: 57  EDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGN 116
           E  PEY++IVD N L+V+IENE+ IIH FIRDKY  +FPELESLV + +DY R VK++GN
Sbjct: 1   EAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGN 60

Query: 117 EMDLT--LVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKV 174
            +D      +L+ +L +A IMVVSVTASTT G+ L E+ L++  +ACD AL L+A+K ++
Sbjct: 61  SLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRI 120

Query: 175 LDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFST 234
            ++VESRMS+IAPNLS I+G++ AAK+MG AGGL+ L+KMPACN+ LLGA++K L+GFS+
Sbjct: 121 YEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSS 180

Query: 235 ATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEI 294
            +     GY+  ++I QS PP LR +A RL+AAK TLAARVDS      G  G   ++EI
Sbjct: 181 TSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEI 240

Query: 295 HKKIEKWQE 303
            +K +KWQE
Sbjct: 241 ERKFDKWQE 249
>d1nt2b_ a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 256 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query453
d2ozbb1249 U4/U6 small nuclear ribonucleoprotein Prp31 {Human 100.0
d1nt2b_256 Nop5p {Archaeon Archaeoglobus fulgidus [TaxId: 223 100.0
>d2ozbb1 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucleoprotein Prp31 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Nop domain
superfamily: Nop domain
family: Nop domain
domain: U4/U6 small nuclear ribonucleoprotein Prp31
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-88  Score=654.75  Aligned_cols=247  Identities=55%  Similarity=0.895  Sum_probs=233.7

Q ss_pred             CCCcchhHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCccccccccChHHHHHHHHHhcCCCCCCc--ccccccCChhHH
Q 012935           57 EDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTL--VDLEGLLPSAII  134 (453)
Q Consensus        57 e~~pey~lIv~~n~L~~~Id~EI~~~h~~iRd~Ys~~FPELeslv~~~~~Y~k~V~~ign~~dl~~--~~L~~iL~~~~i  134 (453)
                      |++|||+||||||+++++||+|||.+|+||||||+||||||++||+||++|+++|+.|||+.|++.  .+|.++|+++++
T Consensus         1 e~~pEy~lIvq~~~l~~~iD~ein~~~~~lrewY~~~FPEL~~lv~~~~~Y~~~V~~i~~~~~~~~~~~~l~~~l~~~~~   80 (249)
T d2ozbb1           1 EAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATI   80 (249)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHCCSHHHHHHHHHHHTTCGGGCTTCTTGGGTSCHHHH
T ss_pred             CCChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcChhHHHHcCCHHHHHHHHHHHcCccccccchhHHHHhCCHHHH
Confidence            689999999999999999999999999999999999999999999999999999999999999865  569999999999


Q ss_pred             HHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHhhchHHHHHHHHHhCCcchhcCC
Q 012935          135 MVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKM  214 (453)
Q Consensus       135 mvisv~Asts~G~~Ls~~dl~~i~~ac~~i~~L~~~r~~i~~yvesrM~~iAPNLsaLvG~~iaArLi~~AGgL~~LAkm  214 (453)
                      |+|+++|++|+|.+|+++||..|.++|+++++|+++|+.|.+||++||..||||||||||+.+|||||++||||.+||+|
T Consensus        81 ~~i~~aa~~s~G~~ls~~dl~~i~~~~~~i~~L~~~r~~l~~yi~~rm~~iAPNl~aLvG~~~aArLi~~AGgL~~LAk~  160 (249)
T d2ozbb1          81 MVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKM  160 (249)
T ss_dssp             HHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTSHHHHHTS
T ss_pred             HHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccHHHHHCchHHHHHHHHhCCHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhhhhhhhhcccccccccCCCCCccceEeeCccccCCCchhhhhHHHHHHhHHHHHhhcccCCCCCCCchhHHHHHHH
Q 012935          215 PACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEI  294 (453)
Q Consensus       215 PAcnIq~LGaeK~~~~g~st~~~~p~~G~Iy~s~lVq~~P~~~r~kaaR~lAaK~aLAARvD~~~~~~~g~~G~~lreei  294 (453)
                      ||||||+|||+|++|+||++++.+||||||||||+||++||++||||+|+||+||+||||||+|+++++|++|.+||++|
T Consensus       161 PastIq~LGaeKalf~~l~~~~~~pk~G~i~~~~~V~~~p~~~rgk~~R~lA~K~slAARiD~~~~~~~~~~G~~~r~~i  240 (249)
T d2ozbb1         161 PACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEI  240 (249)
T ss_dssp             CHHHHTTTTCC----------CCCTTCCTTTTSHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHTTCSTTSHHHHHHHHHH
T ss_pred             ChHHHHHHhhhhhhHHHHhcCCCCCCCCeeecCHHHHhCCHHHHHHHHHHHHHHHHHHHHHhHcCCCCCchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcC
Q 012935          295 HKKIEKWQE  303 (453)
Q Consensus       295 ~~ki~Kl~e  303 (453)
                      ++||+||+|
T Consensus       241 e~ki~k~~E  249 (249)
T d2ozbb1         241 ERKFDKWQE  249 (249)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHhcC
Confidence            999999987
>d1nt2b_ a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure