Citrus Sinensis ID: 012965

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450--
Protein Sequence
MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCSIFLLVASVLQRRLMVIADKPSEFNPCTILFAI
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccHHccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHEEEEHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEc
Coil and Loop (DISEMBL)
MEMFFYLVFGALGAVVAALELSktnkdrintssafnsFKNNYLLVYSLMMAGDWLQGPYVYYLYStygfgkgeiGQLFiagfgssmlFGTIVGSladkqgrkRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLlvdsfslgpvapfdaAACFLAIGMVIILSswtenygdpseskdLLTQFRGAAVAIASDEKIALLGAIQSLfegsmytfvflwtpalspndeeiphgfIFATFMLASMLGSSLASRlmarspprveSYMQIVFVVSSVSLLLPIVTSFlvapsnvksggisfsgslqllgfctfeacvgifwpSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLynvdafpiTVMFGMCSIFLLVASVLQRRLMVIadkpsefnpctilfai
Flexible Loop (DISEMBL)
MEMFFYLVFGALGAVVAALELSKTnkdrintssafnsfKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCSIFLLVASVLQRRLMViadkpsefnpctilfai
Low Complexity Region (SEG)
MEMFFYLVFgalgavvaalELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFmlasmlgsslasrlmarsPPRVESYMQIVFvvssvslllPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCSIFLLVASVLQRRLMVIADKPSEFNPCTILFAI
Disordered region (IsUnstruct)
**MFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDP**SKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMA***PRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCSIFLLVASVLQRRLMVIADKPSEFNPCTILF**
Disordered Region (DISOPRED)
MEMFFYLVFGALGAVVAALELS************FNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSS**********************VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCSIFLLVASVLQRRLMVI*******NPCTILFAI
Disordered Region (DISEMBL)
MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCSIFLLVASVLQRRLMVIADKPSEFNPCTILFAI
Disordered Region (DISPRO)
MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCSIFLLVASVLQRRLMVIADKPSEFNPCTILFAI
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCSIFLLVASVLQRRLMVIADKPSEFNPCTILFAI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	452	2.2.26 [Sep-21-2011]
Q6N075	450	Major facilitator superfa	yes	no	0.889	0.893	0.378	4e-63
Q921Y4	450	Major facilitator superfa	yes	no	0.820	0.824	0.381	6e-61
Q0VC03	450	Major facilitator superfa	yes	no	0.820	0.824	0.381	9e-60
Q5R542	450	Major facilitator superfa	yes	no	0.820	0.824	0.379	6e-59
Q1KKV8	480	Major facilitator superfa	N/A	no	0.836	0.787	0.346	2e-56
Q08B29	451	Major facilitator superfa	N/A	no	0.876	0.878	0.331	4e-53
Q6DG19	481	Major facilitator superfa	yes	no	0.834	0.783	0.331	4e-53
Q28E13	452	Major facilitator superfa	yes	no	0.938	0.938	0.325	3e-49

>sp|Q6N075|MFSD5_HUMAN Major facilitator superfamily domain-containing protein 5 OS=Homo sapiens GN=MFSD5 PE=2 SV=2

 Score =  242 bits (618), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 164/433 (37%), Positives = 248/433 (57%), Gaps = 31/433 (7%)

Query: 6   YLVFGALGAVVAALELSKTNKD---RINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYY 62
           YL F  L A    LELS+       R  ++ +F  F+ ++  VY L +A DWLQ PY+Y 
Sbjct: 6   YLAFVGLLASCLGLELSRCRAKPPGRACSNPSFLRFQLDFYQVYFLALAADWLQAPYLYK 65

Query: 63  LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSP 122
           LY  Y F +G+I  L++ G  S++LFG +  SL D  GRK +CV + LTY L C+TK S 
Sbjct: 66  LYQHYYFLEGQIAILYVCGLASTVLFGLVASSLVDWLGRKNSCVLFSLTYSLCCLTKLSQ 125

Query: 123 QYKILMIGRILGGIATSLLFSAFESWLVAEHNKR-GFEQQWLSITFSKAIFLGNGLVAIL 181
            Y +L++GR LGG++T+LLFSAFE+W + EH +R  F  +W+  TF++A F  N ++A++
Sbjct: 126 DYFVLLVGRALGGLSTALLFSAFEAWYIHEHVERHDFPAEWIPATFARAAF-WNHVLAVV 184

Query: 182 SGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAV 241
           +G+    +     LGPVAPF AA   LA+   + L +W ENY      +       G   
Sbjct: 185 AGVAAEAVASWIGLGPVAPFVAAIPLLALAGALALRNWGENY---DRQRAFSRTCAGGLR 241

Query: 242 AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL- 300
            + SD ++ LLG IQ+LFE  ++ FVFLWTP L P+    P G IF++FM AS+LGSSL 
Sbjct: 242 CLLSDRRVLLLGTIQALFESVIFIFVFLWTPVLDPHGA--PLGIIFSSFMAASLLGSSLY 299

Query: 301 ---ASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLG 357
               S+     P  + S + ++ VV S+ +L     +F  +P   +S   SF      + 
Sbjct: 300 RIATSKRYHLQPMHLLS-LAVLIVVFSLFML-----TFSTSPGQ-ESPVESF------IA 346

Query: 358 FCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVC---VVLYNVDAFPITV 414
           F   E   G+++PS+  +R + IPE  ++ ++N+FR+PL+   C   +VL++ D    T 
Sbjct: 347 FLLIELACGLYFPSMSFLRRKVIPETEQAGVLNWFRVPLHSLACLGLLVLHDSDRKTGTR 406

Query: 415 -MFGMCSIFLLVA 426
            MF +CS  +++A
Sbjct: 407 NMFSICSAVMVMA 419

Homo sapiens (taxid: 9606)

>sp|Q921Y4|MFSD5_MOUSE Major facilitator superfamily domain-containing protein 5 OS=Mus musculus GN=Mfsd5 PE=2 SV=1

 Score =  235 bits (599), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 152/398 (38%), Positives = 229/398 (57%), Gaps = 27/398 (6%)

Query: 6   YLVFGALGAVVAALELSKTNKD---RINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYY 62
           YL F  L A    LELS+       R  ++ +F  F+ ++  VY L +A DWLQ PY+Y 
Sbjct: 6   YLSFVGLLASCLGLELSRCRARPPGRACSNPSFLQFQLDFYQVYFLALAADWLQAPYLYK 65

Query: 63  LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSP 122
           LY  Y F +G+I  L++ G  S++LFG +  SL D  GRK++CV + LTY L CITK S 
Sbjct: 66  LYQHYHFLEGQIAILYVCGLASTVLFGLVASSLVDWLGRKKSCVLFSLTYSLCCITKLSQ 125

Query: 123 QYKILMIGRILGGIATSLLFSAFESWLVAEHNKR-GFEQQWLSITFSKAIFLGNGLVAIL 181
            Y +L++GR LGG++T+LLFSAFE+W + EH +R  F  +W+  TF++A F  N ++A+ 
Sbjct: 126 DYFVLLVGRALGGLSTALLFSAFEAWYIHEHVERHDFPAEWIPATFARAAFW-NHVLAVA 184

Query: 182 SGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAV 241
           +G+    +     LGPVAPF AA   LA+   + L +W ENY      +       G   
Sbjct: 185 AGVAAEAVASWIGLGPVAPFVAAIPLLALTGALALRNWGENY---DRQRAFSKTCAGGLR 241

Query: 242 AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL- 300
            + SD ++ LLG IQ+LFE  ++ FVFLWTP L P+    P G +F++FM AS+LGSSL 
Sbjct: 242 CLLSDRRVLLLGVIQALFESVIFIFVFLWTPVLDPHGA--PLGIVFSSFMAASLLGSSLY 299

Query: 301 ---ASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLG 357
               S+     P  + S + ++ VV S+ +L     +F  +P   ++   SF      + 
Sbjct: 300 RIATSKRYHLQPMHLLS-LAVLIVVFSLFML-----TFSTSPGQ-ENPVESF------IA 346

Query: 358 FCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395
           F   E   G+++PS+  +R + IPE  ++ ++N+FR+P
Sbjct: 347 FLLIELACGLYFPSMSFLRRKVIPETEQAGVLNWFRVP 384

Mus musculus (taxid: 10090)

>sp|Q0VC03|MFSD5_BOVIN Major facilitator superfamily domain-containing protein 5 OS=Bos taurus GN=MFSD5 PE=2 SV=1

 Score =  231 bits (589), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 152/398 (38%), Positives = 228/398 (57%), Gaps = 27/398 (6%)

Query: 6   YLVFGALGAVVAALELSKTNKD---RINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYY 62
           YL F  L A    LELS+       R  ++ +F  F+ ++  VY L +A DWLQ PY+Y 
Sbjct: 6   YLAFVVLLASCLGLELSRCRAKPSGRACSNPSFLRFQLDFYQVYFLALAADWLQAPYLYK 65

Query: 63  LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSP 122
           LY  Y F + +I  L++ G  S++LFG +  SL D  GRK++CV + LTY L C+TK S 
Sbjct: 66  LYQHYHFLEAQIAILYVCGLASTVLFGLVASSLVDWLGRKKSCVLFSLTYSLCCLTKLSR 125

Query: 123 QYKILMIGRILGGIATSLLFSAFESWLVAEHNKR-GFEQQWLSITFSKAIFLGNGLVAIL 181
            Y +L++GR LGG++T+LLFSAFE+W + EH +R  F  +W+  TF++A F  N ++A+ 
Sbjct: 126 DYFVLLVGRALGGLSTALLFSAFEAWYIHEHLERHDFPTEWIPATFARAAF-WNHVLAVA 184

Query: 182 SGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAV 241
           +G+    +     LGPVAPF AA   LA+   + L +W ENY      +       G   
Sbjct: 185 AGVAAEAVACWMGLGPVAPFVAAIPLLALAGALALHNWGENY---DRQRAFSRTCAGGLR 241

Query: 242 AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL- 300
            + SD ++ LLG IQ+LFE  ++ FVFLWTP L P+    P G IF++FM AS+LGSSL 
Sbjct: 242 CLLSDRRVLLLGTIQALFESVIFIFVFLWTPVLDPHGA--PLGIIFSSFMAASLLGSSLY 299

Query: 301 ---ASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLG 357
               S+     P  + S + ++ VV S+ +L     +F  +P   +S   SF      + 
Sbjct: 300 RIATSKRYHLQPMHLLS-LAVLIVVFSLFML-----TFSTSPGQ-ESPVESF------IA 346

Query: 358 FCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395
           F   E   G+++PS+  +R + IPE  ++ ++N+FR+P
Sbjct: 347 FLLIELACGLYFPSMSFLRRKVIPETEQAGVLNWFRVP 384

Bos taurus (taxid: 9913)

>sp|Q5R542|MFSD5_PONAB Major facilitator superfamily domain-containing protein 5 OS=Pongo abelii GN=MFSD5 PE=2 SV=1

 Score =  228 bits (582), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 151/398 (37%), Positives = 228/398 (57%), Gaps = 27/398 (6%)

Query: 6   YLVFGALGAVVAALELSKTNKD---RINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYY 62
           YL F  L A    LELS+       R  ++ +F   + ++  VY L +A DWLQ PY+Y 
Sbjct: 6   YLAFVGLLASCLGLELSRCRAKPPGRACSNPSFLRSQLDFYQVYFLALAADWLQAPYLYK 65

Query: 63  LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSP 122
           LY  Y F +G+I  L++ G  S++LFG +  SL D  GRK +CV + LTY L C+TK S 
Sbjct: 66  LYQHYYFLEGQIAILYVCGLASTVLFGLVASSLVDWLGRKNSCVLFSLTYSLCCLTKLSQ 125

Query: 123 QYKILMIGRILGGIATSLLFSAFESWLVAEHNKR-GFEQQWLSITFSKAIFLGNGLVAIL 181
            Y +L++GR LGG++T+LLFSAFE+W + EH +R  F  +W+  TF++A F  N ++A++
Sbjct: 126 DYFVLLVGRALGGLSTALLFSAFEAWYIHEHVERHDFPTEWIPATFARAAFW-NHVLAVV 184

Query: 182 SGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAV 241
           +G+    +     LGPVAPF AA   LA+   + L +W ENY      +       G   
Sbjct: 185 AGVAAEAVASWIGLGPVAPFVAAIPLLALAGALALRNWGENY---DRQRAFSRTCAGGLR 241

Query: 242 AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL- 300
            + SD ++ LLG IQ+LFE  ++ FVFLWTP L P+    P G +F++FM AS+LGSSL 
Sbjct: 242 CLLSDRRVLLLGTIQALFESVIFIFVFLWTPVLDPHGA--PLGIVFSSFMAASLLGSSLY 299

Query: 301 ---ASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLG 357
               S+     P  + S + ++ VV S+ +L     +F  +P   +S   SF      + 
Sbjct: 300 RIATSKRYHLQPMHLLS-LAVLIVVFSLFML-----TFSTSPGQ-ESPVESF------IA 346

Query: 358 FCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395
           F   E   G+++PS+  +R + IPE  ++ ++N+FR+P
Sbjct: 347 FLLIELACGLYFPSMSFLRRKVIPETEQAGVLNWFRVP 384

Pongo abelii (taxid: 9601)

>sp|Q1KKV8|MFSD5_TAKRU Major facilitator superfamily domain-containing protein 5 OS=Takifugu rubripes GN=mfsd5 PE=3 SV=1

 Score =  220 bits (561), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 144/416 (34%), Positives = 219/416 (52%), Gaps = 38/416 (9%)

Query: 6   YLVFGALGAVVAALELSKTNKDRINTSSA----FNSFKNNYLLVYSLMMAGDWLQGPYVY 61
           Y    +L A+   LEL+        +S+A    F  F+  +L  Y L +  DWLQGPY+Y
Sbjct: 6   YFAVISLLALCVGLELTARRLTPPESSAAVNPAFRRFQATFLRAYLLALWADWLQGPYLY 65

Query: 62  YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHS 121
            LY  Y F + +I  L++ G  S +LF    G L+   GR+  C+ +CL+Y   C+TK S
Sbjct: 66  KLYRHYSFLESQIAILYVCGLASCVLFAPFSGWLSQALGRRHMCIFFCLSYATCCLTKLS 125

Query: 122 PQYKILMIGRILGGIATSLLFSAFESWLVAEHNK-RGFEQQWLSITFSKAIFLGNGLVAI 180
             Y +L++GRILGG++TSLL + FESW V  H +   F ++W+  TF+KA    +GL A+
Sbjct: 126 RDYFVLIVGRILGGLSTSLLTTTFESWYVHHHVEIHDFPKEWIPTTFTKAATWNHGL-AV 184

Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGD--PSESKDLL----- 233
            +GL  NLL +   LGPVAPF  A  FLA     +L+ W +   +  P   K  L     
Sbjct: 185 GAGLVANLLAEWLHLGPVAPFLLAVPFLACCAWFVLTDWAKEEAEKSPEGIKQTLPLGTL 244

Query: 234 ----TQFRGAAV----------AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDE 279
               T     A            + SD+++ LLG +Q+LFE  +Y F+FLWTP L P+  
Sbjct: 245 NGGVTHLSARARFSRSCSDGLRCMLSDKRVMLLGGVQALFESVLYIFIFLWTPVLDPHGS 304

Query: 280 EIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAP 339
             P G +F+ FM ASM+GS     L+ R       ++Q   V+  V++L+   + F++  
Sbjct: 305 --PLGIVFSCFMAASMVGS-----LLFRVATSTRYHLQPGHVL-CVAVLMAFFSFFMLTF 356

Query: 340 SNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395
           S V   G        L       AC G+++P++  ++ + IPEE R++++ +FR+P
Sbjct: 357 STVP--GQPRPHESFLAFLLLELAC-GLYFPALNFLQGRIIPEEKRASVLAWFRLP 409

Takifugu rubripes (taxid: 31033)

>sp|Q08B29|MFSD5_XENLA Major facilitator superfamily domain-containing protein 5 OS=Xenopus laevis GN=mfsd5 PE=2 SV=1

 Score =  209 bits (532), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 138/416 (33%), Positives = 230/416 (55%), Gaps = 20/416 (4%)

Query: 34  AFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVG 93
           AF  F+ ++   Y   +A DWLQGPY+Y LY  Y F +G+I  +++ GFG+S+  G +  
Sbjct: 39  AFRQFQYDFYRTYFPALAADWLQGPYLYKLYQHYHFLEGQIAIIYVCGFGASVFAGLVSV 98

Query: 94  SLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH 153
            L  + GR+++C+ +CL    S + K S +Y +LM GR+LGG ++SLLFS FE+W   EH
Sbjct: 99  PLTSRLGRRKSCILFCLLLSASYLCKLSQEYFVLMTGRVLGGFSSSLLFSCFEAWYTHEH 158

Query: 154 -NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM 212
             +  F  +WL  TF++A    NG +AI +G+  N+  +   LGP +P   A   L + +
Sbjct: 159 AEQHDFPAEWLPHTFTRAA-AWNGGIAIAAGITANVCAEWLGLGPASPSVLAVPLLVLSV 217

Query: 213 VIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTP 272
           V+++  W ENYG  S  + +          +  D ++ LLG IQ+LFE  +Y F+FLWTP
Sbjct: 218 VLVIREWDENYGQTSSFRRVCGD---GLRCLLRDRRVLLLGTIQALFESVVYIFIFLWTP 274

Query: 273 ALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIV 332
            L P++   P G  F++FM AS +GSSL     ++     + ++Q + V+  +S+L+   
Sbjct: 275 VLDPHNA--PLGIAFSSFMAASAVGSSLYHLATSK-----KYHLQPMHVL-CLSILMVFF 326

Query: 333 TSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFF 392
           + F++  S           +  LL F   E   G+++P++  +R + IPE+ ++ ++N+F
Sbjct: 327 SLFMLTFSTAPGQE---HPTESLLAFLLIELACGLYFPAMRFLRRRLIPEKEQTGVLNWF 383

Query: 393 RIP---LNIFVCVVLYNVDAFPITV-MFGMCSIFLLVASVLQRRLMVIADKPSEFN 444
           R+P   L     +VL++ D    T  MF +C++ +L+A +    L  +    SE  
Sbjct: 384 RVPLNLLAGLGLLVLHDSDYQSGTRNMFSLCAVTMLLALLCVVSLFTMVRNDSELR 439

Xenopus laevis (taxid: 8355)

>sp|Q6DG19|MFSD5_DANRE Major facilitator superfamily domain-containing protein 5 OS=Danio rerio GN=mfsd5 PE=2 SV=1

 Score =  209 bits (532), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 139/419 (33%), Positives = 216/419 (51%), Gaps = 42/419 (10%)

Query: 6   YLVFGALGAVVAALE-------LSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGP 58
           YL F  L  +  ALE       LS+  +  +  + AF  F+  +L  Y L +  DWLQGP
Sbjct: 6   YLAFIVLAGLCVALEITARRLTLSQATQTAV-ANPAFQRFQKLFLKAYLLALWADWLQGP 64

Query: 59  YVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCIT 118
           Y+Y LY  Y F + +I  L++ G  S +LF  + G L    GR++ C+ +CL Y + CIT
Sbjct: 65  YLYKLYRHYNFLESQIAILYVCGLASCVLFAPVAGWLPQFLGRRQTCLLFCLAYSVCCIT 124

Query: 119 KHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGL 177
           K S  Y +L++GR+LGG++TSLL + FE+W V  H +   F ++W+ +TF K      GL
Sbjct: 125 KLSQDYFMLILGRVLGGLSTSLLTTTFEAWYVHGHVDIHDFPKEWIPVTFGKVANWNYGL 184

Query: 178 VAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKD----LL 233
            A+ +GL  NL  +   LGPVAPF  A   LA     +LS W +       + D    LL
Sbjct: 185 -AVGAGLVANLFAEWLGLGPVAPFLLAIPSLAACAWFVLSEWGQEDKQEGMNGDKNAPLL 243

Query: 234 TQFRGAAVAIA-----------------SDEKIALLGAIQSLFEGSMYTFVFLWTPALSP 276
                  + ++                 SD ++ LLG +Q+LFE  +Y FVFLWTP L P
Sbjct: 244 NSLNTPKLQLSARARFWRSCVDGLRCLLSDRRVMLLGGVQALFESVLYIFVFLWTPVLDP 303

Query: 277 NDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFL 336
           +    P G +F++ M A+M GS+L  RL   +P R++    +      +++LL   + F+
Sbjct: 304 HGP--PLGIVFSSLMAATMAGSTL-FRLATSAPYRLQPGHLL-----CLAILLAFFSFFM 355

Query: 337 VAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395
           +  S V   G        L       AC G+++P++  ++ + +P E R+ ++ +FR+P
Sbjct: 356 LTFSTVP--GQPRPRESLLAFLLLELAC-GLYFPAVSFLQGRVVPVERRAAVLAWFRLP 411

Danio rerio (taxid: 7955)

>sp|Q28E13|MFSD5_XENTR Major facilitator superfamily domain-containing protein 5 OS=Xenopus tropicalis GN=mfsd5 PE=2 SV=1

 Score =  196 bits (499), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 146/449 (32%), Positives = 240/449 (53%), Gaps = 25/449 (5%)

Query: 6   YLVFGALGAVVAALELSKTNKDRINTSSA-----FNSFKNNYLLVYSLMMAGDWLQGPYV 60
           Y V   L A+ A LE S  +     +S+A     F  F+ ++   Y   +A DWLQGPY+
Sbjct: 6   YFVLVGLIALWAVLEFSACHSKPSTSSNAVGNPAFRQFQYDFYRTYFPALAADWLQGPYL 65

Query: 61  YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
           Y LY  Y F +G+I  +++ GFG+S+  G +   L  + GR+++C+ +CL    S + K 
Sbjct: 66  YKLYQHYHFLEGQIAIIYVCGFGASVFAGLVSAPLTSRLGRRKSCILFCLLLSASYLCKL 125

Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVA 179
           S +Y +L+ GR+LGG ++SLLFS+FE+W   EH  +  F  +WL  TF++A    NG +A
Sbjct: 126 SQEYFVLITGRVLGGFSSSLLFSSFEAWYTHEHAEQHDFPAEWLPHTFTRAA-AWNGGIA 184

Query: 180 ILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGA 239
           I +G+  N   +   LGP +P   A   L + + +++  W ENYG  S  + +       
Sbjct: 185 IAAGVIANACAEWLGLGPASPSVLAVPLLVLSVALVIREWDENYGQTSSFRRVCGD---G 241

Query: 240 AVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSS 299
              +  D ++ LLG IQ+LFE  +Y F+FLWTP L P++   P G  F++FM AS  GSS
Sbjct: 242 LRCLLRDRRVLLLGTIQALFESVVYIFIFLWTPVLDPHN--TPLGIAFSSFMAASAAGSS 299

Query: 300 LASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFC 359
           L     ++     + ++Q + V+  +S+L+   + F++  S           +  LL F 
Sbjct: 300 LYRLATSK-----KYHLQPMHVL-CLSILMVFFSLFMLTFSTAPGQE---HPTESLLAFL 350

Query: 360 TFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP---LNIFVCVVLYNVDAFPITV-M 415
             E   G+++P++  +R + IPE+ +  ++N+FR+P   L     +VL++ D    T  M
Sbjct: 351 LIELACGLYFPAMGFLRCRLIPEKEQIGVLNWFRVPLNLLAGLGLLVLHDSDYQSGTRNM 410

Query: 416 FGMCSIFLLVASVLQRRLMVIADKPSEFN 444
           F +C+I +L+A +    L  +    SE  
Sbjct: 411 FSLCAITMLLALLCVVSLFTMVRNDSELR 439

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	452
255549256	460	conserved hypothetical protein [Ricinus	0.975	0.958	0.916	0.0
449456403	459	PREDICTED: major facilitator superfamily	0.975	0.960	0.897	0.0
18417054	460	major facilitator protein [Arabidopsis t	0.975	0.958	0.893	0.0
297803322	460	hypothetical protein ARALYDRAFT_913755 [	0.975	0.958	0.893	0.0
385137884	460	major facilitator protein, partial [Arab	0.975	0.958	0.893	0.0
225455290	460	PREDICTED: major facilitator superfamily	0.971	0.954	0.895	0.0
224132678	459	predicted protein [Populus trichocarpa]	0.971	0.956	0.899	0.0
356509214	459	PREDICTED: major facilitator superfamily	0.975	0.960	0.900	0.0
356516093	459	PREDICTED: major facilitator superfamily	0.973	0.958	0.902	0.0
224120908	459	predicted protein [Populus trichocarpa]	0.971	0.956	0.904	0.0

>gi|255549256|ref|XP_002515682.1| conserved hypothetical protein [Ricinus communis] gi|223545225|gb|EEF46734.1| conserved hypothetical protein [Ricinus communis]

 Score =  839 bits (2167), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/441 (91%), Positives = 427/441 (96%)

Query: 1   MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
           ME+FFY+VFG LGAVVAALELSKTNKDRINTS AFNSFKNNYLLVYSLMMAGDWLQGPYV
Sbjct: 1   MEVFFYMVFGGLGAVVAALELSKTNKDRINTSPAFNSFKNNYLLVYSLMMAGDWLQGPYV 60

Query: 61  YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
           Y+LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRAC+TYC+TYILSCITKH
Sbjct: 61  YFLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACITYCITYILSCITKH 120

Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
           SPQYK+LMIGR+LGGIATSLLFSAFESWLVAEHNKRGF+QQWLS+TFSKAIFLGNGL+AI
Sbjct: 121 SPQYKVLMIGRVLGGIATSLLFSAFESWLVAEHNKRGFDQQWLSLTFSKAIFLGNGLIAI 180

Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
           LSGLFGNLLVD+F+LGPVAPFDAAACFLAIGM II SSWTEN+GD SESKDLLTQFRGAA
Sbjct: 181 LSGLFGNLLVDTFALGPVAPFDAAACFLAIGMAIIFSSWTENFGDHSESKDLLTQFRGAA 240

Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
           +AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL
Sbjct: 241 MAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300

Query: 301 ASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCT 360
           ASRLMA S PRVESYMQIVFVVSS+SL+LPI T+FLVAPS  + GGISFSG LQLLGFCT
Sbjct: 301 ASRLMAHSSPRVESYMQIVFVVSSISLMLPIATNFLVAPSKARGGGISFSGCLQLLGFCT 360

Query: 361 FEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCS 420
           FEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVC+VLYNV+AFPITVMFGMCS
Sbjct: 361 FEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCIVLYNVNAFPITVMFGMCS 420

Query: 421 IFLLVASVLQRRLMVIADKPS 441
           IFL +AS+LQRRLMVI+DKP 
Sbjct: 421 IFLFMASILQRRLMVISDKPK 441

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456403|ref|XP_004145939.1| PREDICTED: major facilitator superfamily domain-containing protein 5-like [Cucumis sativus] gi|449497371|ref|XP_004160383.1| PREDICTED: major facilitator superfamily domain-containing protein 5-like [Cucumis sativus]

 Score =  825 bits (2132), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/441 (89%), Positives = 423/441 (95%)

Query: 1   MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
           ME+F++LVFGAL  VV ALEL+KTNKDRINT SAFN+FKNNYLLVYSLMMAGDWLQGPYV
Sbjct: 1   MEIFYFLVFGALSLVVVALELTKTNKDRINTPSAFNAFKNNYLLVYSLMMAGDWLQGPYV 60

Query: 61  YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
           YYLYS YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRAC+TYC+TYILSC+TKH
Sbjct: 61  YYLYSQYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACITYCITYILSCVTKH 120

Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
           SP+YK+LM+GR+LGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI
Sbjct: 121 SPEYKVLMLGRVLGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180

Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
           ++GLFGN+LVDS SLGPVAPFDAAACFLAIGM II+SSWTENYGDPSE+KDLLTQFRGAA
Sbjct: 181 IAGLFGNVLVDSLSLGPVAPFDAAACFLAIGMAIIMSSWTENYGDPSENKDLLTQFRGAA 240

Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
           VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPN+E+IPHGFIFATFMLASMLGSSL
Sbjct: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNNEDIPHGFIFATFMLASMLGSSL 300

Query: 301 ASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCT 360
           ASRLMAR+ P+VESYMQIVFVVSS SL+LPIVTSFLVAPS+VK G ISFSG +QLLGFC 
Sbjct: 301 ASRLMARNTPKVESYMQIVFVVSSASLVLPIVTSFLVAPSDVKGGSISFSGCIQLLGFCA 360

Query: 361 FEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCS 420
           FE+CVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCS
Sbjct: 361 FESCVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCS 420

Query: 421 IFLLVASVLQRRLMVIADKPS 441
           IFL VAS+LQRRL  I +KP 
Sbjct: 421 IFLFVASILQRRLQAIVEKPK 441

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18417054|ref|NP_567786.1| major facilitator protein [Arabidopsis thaliana] gi|13272473|gb|AAK17175.1|AF325107_1 putative protein [Arabidopsis thaliana] gi|16930439|gb|AAL31905.1|AF419573_1 AT4g27720/T29A15_210 [Arabidopsis thaliana] gi|15912261|gb|AAL08264.1| AT4g27720/T29A15_210 [Arabidopsis thaliana] gi|21536852|gb|AAM61184.1| putative transporter [Arabidopsis thaliana] gi|27764934|gb|AAO23588.1| At4g27720/T29A15_210 [Arabidopsis thaliana] gi|332659985|gb|AEE85385.1| major facilitator protein [Arabidopsis thaliana]

 Score =  823 bits (2127), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/441 (89%), Positives = 421/441 (95%)

Query: 1   MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
           ME+F+YLVFG LG VVAALELSK NKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV
Sbjct: 1   MEIFYYLVFGVLGLVVAALELSKNNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60

Query: 61  YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
           YYLYSTYGFGKG+IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC+TYILSCITKH
Sbjct: 61  YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKH 120

Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
           SPQYK+LM+GR+LGGIATSLLFS+FESWLVAEHNKRGFEQQWLS+TFSKA+F GNGLVAI
Sbjct: 121 SPQYKVLMVGRVLGGIATSLLFSSFESWLVAEHNKRGFEQQWLSVTFSKAVFFGNGLVAI 180

Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
           ++GLFGNLLVD+FSLGPVAPFDAAACFL IGM +ILSSWTENYGDPSE+KDLLTQFRGAA
Sbjct: 181 IAGLFGNLLVDTFSLGPVAPFDAAACFLTIGMAVILSSWTENYGDPSENKDLLTQFRGAA 240

Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
           VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL
Sbjct: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300

Query: 301 ASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCT 360
           ASRL++RS P+VESYMQIVF+VS  +LLLPI+ +  +APS VK GGISFSG  QLLGFC 
Sbjct: 301 ASRLLSRSTPKVESYMQIVFLVSGAALLLPILMTLFIAPSKVKGGGISFSGCFQLLGFCI 360

Query: 361 FEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCS 420
           FEACVG+FWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNV+AFPITVMFGMCS
Sbjct: 361 FEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVNAFPITVMFGMCS 420

Query: 421 IFLLVASVLQRRLMVIADKPS 441
           IFL VAS+LQRRLM+I DKP 
Sbjct: 421 IFLFVASLLQRRLMMIVDKPK 441

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803322|ref|XP_002869545.1| hypothetical protein ARALYDRAFT_913755 [Arabidopsis lyrata subsp. lyrata] gi|297315381|gb|EFH45804.1| hypothetical protein ARALYDRAFT_913755 [Arabidopsis lyrata subsp. lyrata]

 Score =  823 bits (2127), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/441 (89%), Positives = 422/441 (95%)

Query: 1   MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
           ME+F+YLVFG LG VVAALELSK NKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV
Sbjct: 1   MEVFYYLVFGVLGLVVAALELSKNNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60

Query: 61  YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
           YYLYSTYGFGKG+IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC+TYILSCITKH
Sbjct: 61  YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKH 120

Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
           SPQYK+LM+GR+LGGIATSLLFS+FESWLVAEHNKRGFEQQWLS+TFSKA+F GNGLVAI
Sbjct: 121 SPQYKVLMVGRVLGGIATSLLFSSFESWLVAEHNKRGFEQQWLSVTFSKAVFFGNGLVAI 180

Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
           ++GLFGNLLVD+FSLGPVAPFDAAACFLAIGM +ILSSWTENYGDPSE+KDLLTQFRGAA
Sbjct: 181 IAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWTENYGDPSENKDLLTQFRGAA 240

Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
           VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPN+EEIPHGFIFATFMLASMLGSSL
Sbjct: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNEEEIPHGFIFATFMLASMLGSSL 300

Query: 301 ASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCT 360
           ASRL++RS P+VESYMQIVF+VS  +LLLPI+ +  +APS VK GGISFSG  QLLGFC 
Sbjct: 301 ASRLLSRSTPKVESYMQIVFLVSGAALLLPILMTLFIAPSKVKGGGISFSGCFQLLGFCI 360

Query: 361 FEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCS 420
           FEACVG+FWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNV+AFPITVMFGMCS
Sbjct: 361 FEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVNAFPITVMFGMCS 420

Query: 421 IFLLVASVLQRRLMVIADKPS 441
           IFL VAS+LQRRLM+I DKP 
Sbjct: 421 IFLFVASLLQRRLMMIVDKPK 441

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|385137884|gb|AFI41203.1| major facilitator protein, partial [Arabidopsis thaliana]

 Score =  823 bits (2127), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/441 (89%), Positives = 421/441 (95%)

Query: 1   MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
           ME+F+YLVFG LG VVAALELSK NKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV
Sbjct: 1   MEIFYYLVFGVLGLVVAALELSKNNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60

Query: 61  YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
           YYLYSTYGFGKG+IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC+TYILSCITKH
Sbjct: 61  YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKH 120

Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
           SPQYK+LM+GR+LGGIATSLLFS+FESWLVAEHNKRGFEQQWLS+TFSKA+F GNGLVAI
Sbjct: 121 SPQYKVLMVGRVLGGIATSLLFSSFESWLVAEHNKRGFEQQWLSVTFSKAVFFGNGLVAI 180

Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
           ++GLFGNLLVD+FSLGPVAPFDAAACFLAIGM +ILSSWTENYGDPSE+KDLLTQFRGAA
Sbjct: 181 IAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWTENYGDPSENKDLLTQFRGAA 240

Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
           VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL
Sbjct: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300

Query: 301 ASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCT 360
           ASRL++RS P+VE YMQIVF+VS  +LLLPI+ +  +APS VK GGISFSG  QLLGFC 
Sbjct: 301 ASRLLSRSTPKVEGYMQIVFLVSGAALLLPILMTLFIAPSKVKGGGISFSGCFQLLGFCI 360

Query: 361 FEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCS 420
           FEACVG+FWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNV+AFPITVMFGMCS
Sbjct: 361 FEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVNAFPITVMFGMCS 420

Query: 421 IFLLVASVLQRRLMVIADKPS 441
           IFL VAS+LQRRLM+I DKP 
Sbjct: 421 IFLFVASLLQRRLMMIVDKPK 441

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455290|ref|XP_002274807.1| PREDICTED: major facilitator superfamily domain-containing protein 5 [Vitis vinifera] gi|302143948|emb|CBI23053.3| unnamed protein product [Vitis vinifera]

 Score =  823 bits (2126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/439 (89%), Positives = 424/439 (96%)

Query: 1   MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
           ME+F++LVFGAL AVVA +ELSK NKDR+NT++AFNSFKNNYLLVYSLMMAGDWLQGPYV
Sbjct: 1   MEVFYFLVFGALSAVVAVIELSKNNKDRVNTTTAFNSFKNNYLLVYSLMMAGDWLQGPYV 60

Query: 61  YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
           Y+LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC+TYILSCITKH
Sbjct: 61  YFLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKH 120

Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
           SPQY+ILM+GR+LGGIATSLLFSAFESWLVAEHNKRGFEQQWLS+TFSKAIFLGNGLVAI
Sbjct: 121 SPQYRILMVGRVLGGIATSLLFSAFESWLVAEHNKRGFEQQWLSVTFSKAIFLGNGLVAI 180

Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
           LSGLFGNLLVD+ SLGPVAPFDAAACFLA+GM +ILSSW+ENYGDPSE+KDLLTQF+GAA
Sbjct: 181 LSGLFGNLLVDNLSLGPVAPFDAAACFLAVGMAVILSSWSENYGDPSENKDLLTQFKGAA 240

Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
           VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPN+EEIPHGFIFATFMLASMLGSS+
Sbjct: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNEEEIPHGFIFATFMLASMLGSSV 300

Query: 301 ASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCT 360
           ASRL+AR+  +VESYMQIVFV+SS SLLLPIVT+ LV PS VK G ISF+G +QLLGFCT
Sbjct: 301 ASRLLARASLKVESYMQIVFVISSASLLLPIVTNILVEPSKVKGGSISFAGCVQLLGFCT 360

Query: 361 FEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCS 420
           FEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVC+VLYNV+AFPITVMFGMCS
Sbjct: 361 FEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCIVLYNVNAFPITVMFGMCS 420

Query: 421 IFLLVASVLQRRLMVIADK 439
           IFL VAS+LQRRLMVIADK
Sbjct: 421 IFLFVASILQRRLMVIADK 439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132678|ref|XP_002321382.1| predicted protein [Populus trichocarpa] gi|222868378|gb|EEF05509.1| predicted protein [Populus trichocarpa]

 Score =  823 bits (2125), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/439 (89%), Positives = 422/439 (96%)

Query: 1   MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
           ME F+YLVF AL AVV  +E+SKT KDRINTS AFNSFKNNYL+VYSLMMAGDWLQGPYV
Sbjct: 1   MEAFYYLVFAALSAVVFGVEISKTTKDRINTSPAFNSFKNNYLVVYSLMMAGDWLQGPYV 60

Query: 61  YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
           Y+LY+TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGR+RACVTYC+TYILSCITKH
Sbjct: 61  YFLYTTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRRRACVTYCITYILSCITKH 120

Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
           SPQY++LMIGR+LGGIATSLLFS+FESWLVAEHNKRGF+QQWLS+TFSKAIFLGNGLVAI
Sbjct: 121 SPQYRVLMIGRVLGGIATSLLFSSFESWLVAEHNKRGFDQQWLSLTFSKAIFLGNGLVAI 180

Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
           LSGLFGN LVD+F LGPVAPFDAAACFLAIGM +ILSSWTENYGDPSE+KDL+TQFRGAA
Sbjct: 181 LSGLFGNFLVDTFQLGPVAPFDAAACFLAIGMAVILSSWTENYGDPSENKDLITQFRGAA 240

Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
           VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSS+
Sbjct: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSI 300

Query: 301 ASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCT 360
           ASRLMARS PRVESYMQIVF+VSS SLLLPIVTSFLVAPS VK G +S SG LQ+LGFCT
Sbjct: 301 ASRLMARSSPRVESYMQIVFIVSSASLLLPIVTSFLVAPSKVKGGSMSLSGCLQMLGFCT 360

Query: 361 FEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCS 420
           FEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNV+AFPITVMFGMCS
Sbjct: 361 FEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVNAFPITVMFGMCS 420

Query: 421 IFLLVASVLQRRLMVIADK 439
           IFL+VAS+LQRRL+VIA+K
Sbjct: 421 IFLVVASILQRRLLVIAEK 439

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509214|ref|XP_003523346.1| PREDICTED: major facilitator superfamily domain-containing protein 5-like [Glycine max]

 Score =  822 bits (2124), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/441 (90%), Positives = 421/441 (95%)

Query: 1   MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
           ME+FFY VFG L AVVA +ELSK NKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV
Sbjct: 1   MELFFYTVFGGLAAVVAVMELSKNNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60

Query: 61  YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
           YYLYSTYG+GKG+IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC+TYILSCITKH
Sbjct: 61  YYLYSTYGYGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKH 120

Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
           SPQYK+LM+GRILGGIATSLLFSAFESWLVAEH KRGF+QQWLS+TFSKAIFLGNGLVAI
Sbjct: 121 SPQYKVLMLGRILGGIATSLLFSAFESWLVAEHFKRGFDQQWLSLTFSKAIFLGNGLVAI 180

Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
           LSGLFGN+LVD+ +LGPVAPFDAA+CFLAIGM IILSSWTEN+GDPSE+KDLLTQFRGAA
Sbjct: 181 LSGLFGNVLVDTLALGPVAPFDAASCFLAIGMAIILSSWTENFGDPSENKDLLTQFRGAA 240

Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
           VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL
Sbjct: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300

Query: 301 ASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCT 360
           ASRLM+RS  RVESYMQIVF VSS +L+LPI+T+FLV PS VK G ISFSG +QLLGFC 
Sbjct: 301 ASRLMSRSSLRVESYMQIVFAVSSAALMLPILTTFLVVPSGVKGGSISFSGCIQLLGFCA 360

Query: 361 FEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCS 420
           FE+CVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCS
Sbjct: 361 FESCVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCS 420

Query: 421 IFLLVASVLQRRLMVIADKPS 441
           IFLLVA +LQRRLMVI+DKP 
Sbjct: 421 IFLLVACILQRRLMVISDKPK 441

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516093|ref|XP_003526731.1| PREDICTED: major facilitator superfamily domain-containing protein 5-like isoform 1 [Glycine max]

 Score =  822 bits (2123), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/440 (90%), Positives = 422/440 (95%)

Query: 1   MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
           ME+FFY VFG LGAVVA  ELSK+NKDRINTSSAFNSFKNNYL+VYSLMMAGDWLQGPYV
Sbjct: 1   MELFFYAVFGGLGAVVAVTELSKSNKDRINTSSAFNSFKNNYLIVYSLMMAGDWLQGPYV 60

Query: 61  YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
           YYLYSTYG+GKG+IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC+TYILSCITKH
Sbjct: 61  YYLYSTYGYGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKH 120

Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
           SP YK+LM+GRILGGIATSLLFSAFESWLVAEH KRGF+QQWLS+TFSKAIFLGNGLVAI
Sbjct: 121 SPHYKVLMLGRILGGIATSLLFSAFESWLVAEHFKRGFDQQWLSLTFSKAIFLGNGLVAI 180

Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
           LSGLFGN+LVD+ +LGPVAPFDAA+CFLAIGM IILSSW+EN+GDPSE+KDLLTQFRGAA
Sbjct: 181 LSGLFGNVLVDTLALGPVAPFDAASCFLAIGMAIILSSWSENFGDPSENKDLLTQFRGAA 240

Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
           VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL
Sbjct: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300

Query: 301 ASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCT 360
           ASRLMARS  RVESYMQIVF VSS +L+LPI+T+FLVAPS VK G ISFSG +QLLGFC 
Sbjct: 301 ASRLMARSSLRVESYMQIVFAVSSAALMLPILTTFLVAPSGVKGGSISFSGCIQLLGFCA 360

Query: 361 FEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCS 420
           FE+CVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCS
Sbjct: 361 FESCVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCS 420

Query: 421 IFLLVASVLQRRLMVIADKP 440
           IFLLVA +LQRRLMVI+DKP
Sbjct: 421 IFLLVACILQRRLMVISDKP 440

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120908|ref|XP_002318449.1| predicted protein [Populus trichocarpa] gi|118483361|gb|ABK93582.1| unknown [Populus trichocarpa] gi|222859122|gb|EEE96669.1| predicted protein [Populus trichocarpa]

 Score =  822 bits (2122), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/439 (90%), Positives = 420/439 (95%)

Query: 1   MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
           ME F+YLVFGAL AVV  +ELSKT KDRINTS AFNSFKNNYL+VYSLMMAGDWLQGPYV
Sbjct: 1   MEAFYYLVFGALSAVVLGIELSKTTKDRINTSPAFNSFKNNYLVVYSLMMAGDWLQGPYV 60

Query: 61  YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
           Y+LY+TYGFGKG+IGQLFIAGFGSSMLFGTIVGSLADKQGR+RACVTYC+TYILSCITKH
Sbjct: 61  YFLYTTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRRRACVTYCITYILSCITKH 120

Query: 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
           SPQY+ILMIGRILGGIATSLLFS+FESWLVAEHNKRGFEQQWLS+TFSKAIFLGNGLVAI
Sbjct: 121 SPQYRILMIGRILGGIATSLLFSSFESWLVAEHNKRGFEQQWLSLTFSKAIFLGNGLVAI 180

Query: 181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
           LSGLFGNLLVD+F LGPVAPFDAAACFLAIGM II+SSW+ENYGDPSE+KDLL QFRGAA
Sbjct: 181 LSGLFGNLLVDTFQLGPVAPFDAAACFLAIGMAIIMSSWSENYGDPSENKDLLAQFRGAA 240

Query: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300
           VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL
Sbjct: 241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300

Query: 301 ASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCT 360
           ASRLMARS PRVESYMQIVFVVSS SLLLPIV+SFLV P   K+ GISFS  LQ+LGFCT
Sbjct: 301 ASRLMARSSPRVESYMQIVFVVSSASLLLPIVSSFLVPPPKEKAEGISFSSCLQILGFCT 360

Query: 361 FEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCS 420
           FEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVC+VLYNV+AFPIT+MFGMCS
Sbjct: 361 FEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCIVLYNVNAFPITIMFGMCS 420

Query: 421 IFLLVASVLQRRLMVIADK 439
           IFL VAS+LQRRLM+IADK
Sbjct: 421 IFLFVASILQRRLMMIADK 439

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	452
TAIR|locus:2137707	460	AT4G27720 [Arabidopsis thalian	0.973	0.956	0.829	3.6e-199
TAIR|locus:2019429	462	AT1G64650 [Arabidopsis thalian	0.969	0.948	0.817	4.3e-196
TAIR|locus:2082971	460	AT3G49310 [Arabidopsis thalian	0.973	0.956	0.802	9.2e-194
WB|WBGene00021870	432	Y54G2A.4 [Caenorhabditis elega	0.654	0.685	0.495	2.6e-70
UNIPROTKB|Q6N075	450	MFSD5 "Major facilitator super	0.898	0.902	0.342	2.1e-61
MGI|MGI:2145901	450	Mfsd5 "major facilitator super	0.902	0.906	0.340	4.3e-61
UNIPROTKB|Q0VC03	450	MFSD5 "Major facilitator super	0.898	0.902	0.340	5.5e-61
ZFIN|ZDB-GENE-040718-468	481	mfsd5 "major facilitator super	0.435	0.409	0.4	4.2e-53
TAIR|locus:1005716655	449	AT2G23093 "AT2G23093" [Arabido	0.559	0.563	0.245	2.5e-20
CGD|CAL0001498	496	HGT18 [Candida albicans (taxid	0.362	0.330	0.313	6.1e-06

TAIR|locus:2137707 AT4G27720 [Arabidopsis thaliana (taxid:3702)]

 Score = 1928 (683.7 bits), Expect = 3.6e-199, P = 3.6e-199
 Identities = 365/440 (82%), Positives = 388/440 (88%)

Query:     1 MEMFFYLVFXXXXXXXXXXELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
             ME+F+YLVF          ELSK NKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV
Sbjct:     1 MEIFYYLVFGVLGLVVAALELSKNNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60

Query:    61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
             YYLYSTYGFGKG+IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC+TYILSCITKH
Sbjct:    61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKH 120

Query:   121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
             SPQYK+LM+GR+LGGIATSLLFS+FESWLVAEHNKRGFEQQWLS+TFSKA+F GNGLVAI
Sbjct:   121 SPQYKVLMVGRVLGGIATSLLFSSFESWLVAEHNKRGFEQQWLSVTFSKAVFFGNGLVAI 180

Query:   181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
             ++GLFGNLLVD+FSLGPVAPFDAAACFL IGM +ILSSWTENYGDPSE+KDLLTQFRGAA
Sbjct:   181 IAGLFGNLLVDTFSLGPVAPFDAAACFLTIGMAVILSSWTENYGDPSENKDLLTQFRGAA 240

Query:   241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFXXXXXXXXXX 300
             VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATF          
Sbjct:   241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSL 300

Query:   301 XXXXXXXXPPRVESYMQIVFXXXXXXXXXPIVTSFLVAPSNVKSGGISFSGSLQLLGFCT 360
                      P+VESYMQIVF         PI+ +  +APS VK GGISFSG  QLLGFC 
Sbjct:   301 ASRLLSRSTPKVESYMQIVFLVSGAALLLPILMTLFIAPSKVKGGGISFSGCFQLLGFCI 360

Query:   361 FEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCS 420
             FEACVG+FWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNV+AFPITVMFGMCS
Sbjct:   361 FEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVNAFPITVMFGMCS 420

Query:   421 IFLLVASVLQRRLMVIADKP 440
             IFL VAS+LQRRLM+I DKP
Sbjct:   421 IFLFVASLLQRRLMMIVDKP 440

GO:0005886 "plasma membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2019429 AT1G64650 [Arabidopsis thaliana (taxid:3702)]

 Score = 1899 (673.5 bits), Expect = 4.3e-196, P = 4.3e-196
 Identities = 358/438 (81%), Positives = 388/438 (88%)

Query:     1 MEMFFYLVFXXXXXXXXXXELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
             ME+F+++VF          ELSK+NKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV
Sbjct:     1 MEIFYFVVFGGLAAIVAGLELSKSNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60

Query:    61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
             YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRA +TYC+TYILSCITKH
Sbjct:    61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRASITYCITYILSCITKH 120

Query:   121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
             SPQYK+LM+GR+LGGIATSLLFSAFESWLVAEHNKRGFEQQWLS+TFSKAIFLGNGLVAI
Sbjct:   121 SPQYKVLMVGRVLGGIATSLLFSAFESWLVAEHNKRGFEQQWLSVTFSKAIFLGNGLVAI 180

Query:   181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
             ++GLFGN LVDS SLGPVAPFDAAACFLAIGM +I+SSW+ENYGDPSE+KDLLTQF+ AA
Sbjct:   181 IAGLFGNYLVDSLSLGPVAPFDAAACFLAIGMAVIISSWSENYGDPSENKDLLTQFKNAA 240

Query:   241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFXXXXXXXXXX 300
              AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPN+E+IPHGFIFATF          
Sbjct:   241 SAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNEEDIPHGFIFATFMLASMLGSSI 300

Query:   301 XXXXXXXXPPRVESYMQIVFXXXXXXXXXPIVTSFLVAPSNVKSGGISFSGSLQLLGFCT 360
                      P+VESYMQIVF         P+VTSFLVAPS VK G ISFSG +QL+GFCT
Sbjct:   301 ASRLLAHSSPKVESYMQIVFVISSAALMLPVVTSFLVAPSGVKGGSISFSGCIQLMGFCT 360

Query:   361 FEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCS 420
             FEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVC+VLYNVDAFP+TVMFGMCS
Sbjct:   361 FEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCLVLYNVDAFPMTVMFGMCS 420

Query:   421 IFLLVASVLQRRLMVIAD 438
             +FL VAS+LQRRLM +A+
Sbjct:   421 VFLFVASILQRRLMNVAE 438

GO:0009507 "chloroplast" evidence=ISM

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2082971 AT3G49310 [Arabidopsis thaliana (taxid:3702)]

 Score = 1877 (665.8 bits), Expect = 9.2e-194, P = 9.2e-194
 Identities = 353/440 (80%), Positives = 384/440 (87%)

Query:     1 MEMFFYLVFXXXXXXXXXXELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYV 60
             ME+F+YLVF          ELSKTNKDRINTSS+FNSFKNNYLLV+S+MMAGDWLQGPYV
Sbjct:     1 MEVFYYLVFGVMAAVVAALELSKTNKDRINTSSSFNSFKNNYLLVFSIMMAGDWLQGPYV 60

Query:    61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH 120
             YYLYSTYGFGKG+IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC+ YILSCITKH
Sbjct:    61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCIVYILSCITKH 120

Query:   121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180
             SPQYK+LM+GRILGGIATSLLFSAFESWL+AEHNKR FEQQWLS+TFSKA+FLGNGLVAI
Sbjct:   121 SPQYKVLMVGRILGGIATSLLFSAFESWLIAEHNKRNFEQQWLSLTFSKAVFLGNGLVAI 180

Query:   181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAA 240
             LSGLFGNLLVD+FS GPVAPFDAAACFLAIGM IIL +W+EN+GDPS+SKDLLTQF+ AA
Sbjct:   181 LSGLFGNLLVDTFSFGPVAPFDAAACFLAIGMAIILGTWSENFGDPSDSKDLLTQFKVAA 240

Query:   241 VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFXXXXXXXXXX 300
             +AIASDEKIALLGAIQSLFE SMYTFVFLWTPALSPNDEEIPHGF+FATF          
Sbjct:   241 IAIASDEKIALLGAIQSLFEASMYTFVFLWTPALSPNDEEIPHGFVFATFMLASMLGSSL 300

Query:   301 XXXXXXXXPPRVESYMQIVFXXXXXXXXXPIVTSFLVAPSNVKSGGISFSGSLQLLGFCT 360
                       RVE+YMQIVF         PI TS LV PS VK  G+S + S+QLLGFC 
Sbjct:   301 AARLMSRSSLRVENYMQIVFLVSAASLLLPITTSVLVTPSKVKDEGLSLTSSIQLLGFCV 360

Query:   361 FEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCS 420
             FE+CVGIFWPSIMKMRSQYIPEEARSTIMNFFR+PLNIFVC+VLYNVDAFPIT+MFGMCS
Sbjct:   361 FESCVGIFWPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCIVLYNVDAFPITIMFGMCS 420

Query:   421 IFLLVASVLQRRLMVIADKP 440
             IFL VAS+LQRRLMVI++KP
Sbjct:   421 IFLFVASILQRRLMVISEKP 440

GO:0005794 "Golgi apparatus" evidence=IDA

WB|WBGene00021870 Y54G2A.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 151/305 (49%), Positives = 185/305 (60%)

Query:    30 NTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFG 89
             N    F SF+  YL+VY + +AGDWLQGP+VY LY +YG  K +I  LFIAGFGSS+LFG
Sbjct:    27 NDDPKFKSFQRTYLIVYMMAVAGDWLQGPHVYALYESYGMSKHQIEILFIAGFGSSLLFG 86

Query:    90 TIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWL 149
             T +GS+ADK GR+  C+ Y + Y  +CITKH     +LMIGR LGGIATS+L+SAFESWL
Sbjct:    87 TFIGSIADKFGRRNNCLMYAILYGGACITKHFGNMPVLMIGRFLGGIATSILYSAFESWL 146

Query:   150 VAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLA 209
             + EHN RGF    L   FS A  LGN L+AI+SG+    + + F  G VAPFD A   L 
Sbjct:   147 IFEHNTRGFSDSLLGTVFSNAA-LGNSLIAIISGVAAQFVAERF--GFVAPFDLALSVLL 203

Query:   210 IGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFL 269
             I  VII+++W ENYG+  E   +   F+ A  AI  D  +  LG +QSLFEGSMYTFV  
Sbjct:   204 IMAVIIMNTWPENYGN--EKAPVKESFQKATQAIREDPNVFCLGLVQSLFEGSMYTFVLE 261

Query:   270 WTPALS--PNDEEIPHGFIFATFXXXXXXXXXXXXXXXXXXPPRVESYMQIVFXXXXXXX 327
             WTPALS    D  IPHG+IFA F                   P  ES+M+ V        
Sbjct:   262 WTPALSRAAGDVGIPHGYIFAAFMVATMIGSSVFKLLQQHERP--ESFMRYVLLLAAVCL 319

Query:   328 XXPIV 332
               PIV
Sbjct:   320 SMPIV 324

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q6N075 MFSD5 "Major facilitator superfamily domain-containing protein 5" [Homo sapiens (taxid:9606)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 147/429 (34%), Positives = 228/429 (53%)

Query:     6 YLVFXXXXXXXXXXELSKTNKD---RINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYY 62
             YL F          ELS+       R  ++ +F  F+ ++  VY L +A DWLQ PY+Y 
Sbjct:     6 YLAFVGLLASCLGLELSRCRAKPPGRACSNPSFLRFQLDFYQVYFLALAADWLQAPYLYK 65

Query:    63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSP 122
             LY  Y F +G+I  L++ G  S++LFG +  SL D  GRK +CV + LTY L C+TK S 
Sbjct:    66 LYQHYYFLEGQIAILYVCGLASTVLFGLVASSLVDWLGRKNSCVLFSLTYSLCCLTKLSQ 125

Query:   123 QYKILMIGRILGGIATSLLFSAFESWLVAEHNKR-GFEQQWLSITFSKAIFLGNGLVAIL 181
              Y +L++GR LGG++T+LLFSAFE+W + EH +R  F  +W+  TF++A F  N ++A++
Sbjct:   126 DYFVLLVGRALGGLSTALLFSAFEAWYIHEHVERHDFPAEWIPATFARAAFW-NHVLAVV 184

Query:   182 SGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAV 241
             +G+    +     LGPVAPF AA   LA+   + L +W ENY      +       G   
Sbjct:   185 AGVAAEAVASWIGLGPVAPFVAAIPLLALAGALALRNWGENY---DRQRAFSRTCAGGLR 241

Query:   242 AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFXXXXXXXXXXX 301
              + SD ++ LLG IQ+LFE  ++ FVFLWTP L P+    P G IF++F           
Sbjct:   242 CLLSDRRVLLLGTIQALFESVIFIFVFLWTPVLDPHGA--PLGIIFSSFMAASLLGSSLY 299

Query:   302 XXXXXXXPPRVESYMQIVFXXXXXXXXXPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTF 361
                       ++  M ++            + +F  +P   +S   SF      + F   
Sbjct:   300 RIATSKRY-HLQP-MHLLSLAVLIVVFSLFMLTFSTSPGQ-ESPVESF------IAFLLI 350

Query:   362 EACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCV---VLYNVDAFPITV-MFG 417
             E   G+++PS+  +R + IPE  ++ ++N+FR+PL+   C+   VL++ D    T  MF 
Sbjct:   351 ELACGLYFPSMSFLRRKVIPETEQAGVLNWFRVPLHSLACLGLLVLHDSDRKTGTRNMFS 410

Query:   418 MCSIFLLVA 426
             +CS  +++A
Sbjct:   411 ICSAVMVMA 419

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:2145901 Mfsd5 "major facilitator superfamily domain containing 5" [Mus musculus (taxid:10090)]

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 147/432 (34%), Positives = 231/432 (53%)

Query:     6 YLVFXXXXXXXXXXELSKTNK---DRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYY 62
             YL F          ELS+       R  ++ +F  F+ ++  VY L +A DWLQ PY+Y 
Sbjct:     6 YLSFVGLLASCLGLELSRCRARPPGRACSNPSFLQFQLDFYQVYFLALAADWLQAPYLYK 65

Query:    63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSP 122
             LY  Y F +G+I  L++ G  S++LFG +  SL D  GRK++CV + LTY L CITK S 
Sbjct:    66 LYQHYHFLEGQIAILYVCGLASTVLFGLVASSLVDWLGRKKSCVLFSLTYSLCCITKLSQ 125

Query:   123 QYKILMIGRILGGIATSLLFSAFESWLVAEHNKR-GFEQQWLSITFSKAIFLGNGLVAIL 181
              Y +L++GR LGG++T+LLFSAFE+W + EH +R  F  +W+  TF++A F  N ++A+ 
Sbjct:   126 DYFVLLVGRALGGLSTALLFSAFEAWYIHEHVERHDFPAEWIPATFARAAFW-NHVLAVA 184

Query:   182 SGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAV 241
             +G+    +     LGPVAPF AA   LA+   + L +W ENY      +       G   
Sbjct:   185 AGVAAEAVASWIGLGPVAPFVAAIPLLALTGALALRNWGENY---DRQRAFSKTCAGGLR 241

Query:   242 AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFXXXXXXXXXXX 301
              + SD ++ LLG IQ+LFE  ++ FVFLWTP L P+    P G +F++F           
Sbjct:   242 CLLSDRRVLLLGVIQALFESVIFIFVFLWTPVLDPHGA--PLGIVFSSFMAASLLGSSLY 299

Query:   302 XXXXXXXPPRVESYMQIVFXXXXXXXXXPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTF 361
                       ++  M ++            + +F  +P   ++   SF      + F   
Sbjct:   300 RIATSKRY-HLQP-MHLLSLAVLIVVFSLFMLTFSTSPGQ-ENPVESF------IAFLLI 350

Query:   362 EACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCV---VLYNVDAFPITV-MFG 417
             E   G+++PS+  +R + IPE  ++ ++N+FR+PL++  C+   VL++ D    T  MF 
Sbjct:   351 ELACGLYFPSMSFLRRKVIPETEQAGVLNWFRVPLHLLACLGLLVLHDSDRKTGTRNMFS 410

Query:   418 MCSIFLLVASVL 429
             +CS  ++V ++L
Sbjct:   411 ICSA-VMVTTLL 421

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q0VC03 MFSD5 "Major facilitator superfamily domain-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 146/429 (34%), Positives = 228/429 (53%)

Query:     6 YLVFXXXXXXXXXXELSKTN---KDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYY 62
             YL F          ELS+       R  ++ +F  F+ ++  VY L +A DWLQ PY+Y 
Sbjct:     6 YLAFVVLLASCLGLELSRCRAKPSGRACSNPSFLRFQLDFYQVYFLALAADWLQAPYLYK 65

Query:    63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSP 122
             LY  Y F + +I  L++ G  S++LFG +  SL D  GRK++CV + LTY L C+TK S 
Sbjct:    66 LYQHYHFLEAQIAILYVCGLASTVLFGLVASSLVDWLGRKKSCVLFSLTYSLCCLTKLSR 125

Query:   123 QYKILMIGRILGGIATSLLFSAFESWLVAEHNKR-GFEQQWLSITFSKAIFLGNGLVAIL 181
              Y +L++GR LGG++T+LLFSAFE+W + EH +R  F  +W+  TF++A F  N ++A+ 
Sbjct:   126 DYFVLLVGRALGGLSTALLFSAFEAWYIHEHLERHDFPTEWIPATFARAAFW-NHVLAVA 184

Query:   182 SGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAV 241
             +G+    +     LGPVAPF AA   LA+   + L +W ENY      +       G   
Sbjct:   185 AGVAAEAVACWMGLGPVAPFVAAIPLLALAGALALHNWGENY---DRQRAFSRTCAGGLR 241

Query:   242 AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFXXXXXXXXXXX 301
              + SD ++ LLG IQ+LFE  ++ FVFLWTP L P+    P G IF++F           
Sbjct:   242 CLLSDRRVLLLGTIQALFESVIFIFVFLWTPVLDPHGA--PLGIIFSSFMAASLLGSSLY 299

Query:   302 XXXXXXXPPRVESYMQIVFXXXXXXXXXPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTF 361
                       ++  M ++            + +F  +P   +S   SF      + F   
Sbjct:   300 RIATSKRY-HLQP-MHLLSLAVLIVVFSLFMLTFSTSPGQ-ESPVESF------IAFLLI 350

Query:   362 EACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCV---VLYNVDAFPITV-MFG 417
             E   G+++PS+  +R + IPE  ++ ++N+FR+PL++  C+   VL++ D    T  MF 
Sbjct:   351 ELACGLYFPSMSFLRRKVIPETEQAGVLNWFRVPLHLLACLGLLVLHDSDRKTGTRNMFS 410

Query:   418 MCSIFLLVA 426
             +CS  +++A
Sbjct:   411 ICSAVMVMA 419

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

ZFIN|ZDB-GENE-040718-468 mfsd5 "major facilitator superfamily domain containing 5" [Danio rerio (taxid:7955)]

 Score = 386 (140.9 bits), Expect = 4.2e-53, Sum P(2) = 4.2e-53
 Identities = 80/200 (40%), Positives = 116/200 (58%)

Query:    21 LSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIA 80
             LS+  +  +  + AF  F+  +L  Y L +  DWLQGPY+Y LY  Y F + +I  L++ 
Sbjct:    28 LSQATQTAV-ANPAFQRFQKLFLKAYLLALWADWLQGPYLYKLYRHYNFLESQIAILYVC 86

Query:    81 GFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSL 140
             G  S +LF  + G L    GR++ C+ +CL Y + CITK S  Y +L++GR+LGG++TSL
Sbjct:    87 GLASCVLFAPVAGWLPQFLGRRQTCLLFCLAYSVCCITKLSQDYFMLILGRVLGGLSTSL 146

Query:   141 LFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVA 199
             L + FE+W V  H +   F ++W+ +TF K      GL A+ +GL  NL  +   LGPVA
Sbjct:   147 LTTTFEAWYVHGHVDIHDFPKEWIPVTFGKVANWNYGL-AVGAGLVANLFAEWLGLGPVA 205

Query:   200 PFDAAACFLAIGMVIILSSW 219
             PF  A   LA     +LS W
Sbjct:   206 PFLLAIPSLAACAWFVLSEW 225

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:1005716655 AT2G23093 "AT2G23093" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
 Identities = 64/261 (24%), Positives = 118/261 (45%)

Query:    32 SSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTI 91
             SS+F  F+  +L +Y+L    + L   Y     +TYG  K  +      G+ ++++ G +
Sbjct:    48 SSSFARFQRWFLAIYTLSSVMEGLLSVYGELELTTYGLSKESMVFYLCVGYSTALVLGPV 107

Query:    92 VGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFS-AFESWLV 150
             +G ++D  G+K+ C+ YC+ +++  + K            +   +A  L++S  FE+WLV
Sbjct:   108 LGVVSDLIGQKKICLLYCVLHLIVGVWKRITMSPSAWFANVFLSLA-GLVYSFGFETWLV 166

Query:   151 AEHNKRGFEQQWLSITFSKAIFLGNGLVAILSG-LFGNLLVDSFSLGPVAPFDAAACFLA 209
              EH K+      L+ TF    FL +   +++ G +  N LV       +A    A+  L+
Sbjct:   167 VEHEKQSQRNDSLNETFWLMTFLESA--SLIGGQVLANWLVGENVQDGIALSATASLLLS 224

Query:   210 IGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFL 269
             +  +I +    +        +D  T F      +  D++I  LG  Q+  + S   F  L
Sbjct:   225 VVTIICIVQTAKEPLKTLPFRDYSTAFYAY---VLGDKRIWFLGTSQACLQFSTAVFWIL 281

Query:   270 WTPALSPNDEEIPHGFIFATF 290
             W P +  +  E+  G I+  F
Sbjct:   282 WAPTIVADGREVNLGLIYPCF 302

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

CGD|CAL0001498 HGT18 [Candida albicans (taxid:5476)]

 Score = 141 (54.7 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
 Identities = 58/185 (31%), Positives = 92/185 (49%)

Query:    73 EIGQLFIAGFGSSMLFGTI-VGSLADKQGRKRACVTYCLTYIL-SCITKHSPQYKILMIG 130
             +IG L  + F    LFG+  VG LADK GRK+  + +CL YI+ S I   S  Y  L++G
Sbjct:    73 QIG-LVTSIFSIGGLFGSFYVGHLADKYGRKKTSLLHCLLYIIGSTINGLSNTYASLLLG 131

Query:   131 RILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSK-AIFLGNGLVAILSGLFGNLL 189
             R + G+      SA     +  +     E + L  + ++ +I +G     +LS  + N  
Sbjct:   132 RFICGLGAG---SALVITSIYINEVSPIETKGLLGSMNQFSINIGILFTQLLSLNWSNDN 188

Query:   190 VDSFSLGPVAPFDAAACFLAIGMVIILSS-------WTENYGDPSESKDLLTQFRGAAVA 242
                + L     F AA  F+A+  VI++SS       W  N GD +E+  +L + RG + +
Sbjct:   189 DWRWLL-----FMAA--FIAVANVIVVSSYLNESPVWLANQGDTAEAFTILHRLRGGSYS 241

Query:   243 IASDE 247
             +A+DE
Sbjct:   242 VATDE 246

GO:0008643 "carbohydrate transport" evidence=ISS

GO:0051119 "sugar transmembrane transporter activity" evidence=ISS

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0015758 "glucose transport" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q921Y4	MFSD5_MOUSE	No assigned EC number	0.3819	0.8207	0.8244	yes	no
Q0VC03	MFSD5_BOVIN	No assigned EC number	0.3819	0.8207	0.8244	yes	no
Q28E13	MFSD5_XENTR	No assigned EC number	0.3251	0.9380	0.9380	yes	no
Q5R542	MFSD5_PONAB	No assigned EC number	0.3793	0.8207	0.8244	yes	no
Q6N075	MFSD5_HUMAN	No assigned EC number	0.3787	0.8893	0.8933	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	452
pfam05631	354	pfam05631, DUF791, Protein of unknown function (DU	0.0
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	9e-07
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.001

>gnl|CDD|114359 pfam05631, DUF791, Protein of unknown function (DUF791)

 Score =  596 bits (1538), Expect = 0.0
 Identities = 281/355 (79%), Positives = 306/355 (86%), Gaps = 1/355 (0%)

Query: 4   FFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYL 63
           F+YLVFG L AVVA LEL K +KDR NT   FNSFKNNYLLVYS+MMAGDWLQGPYVYYL
Sbjct: 1   FYYLVFGGLAAVVALLELYKRSKDRSNTDPKFNSFKNNYLLVYSMMMAGDWLQGPYVYYL 60

Query: 64  YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQ 123
           YS+YGF KG+IG LFIAGFGSSMLFGTIVGSLADKQGRKRAC+TYC+ YILSCITKHSP 
Sbjct: 61  YSSYGFSKGDIGILFIAGFGSSMLFGTIVGSLADKQGRKRACLTYCILYILSCITKHSPN 120

Query: 124 YKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSG 183
           YK+LMIGR LGGIATSLLFSAFESWL+AEHNKRGF  QWLS TFSKA FLGNGLVAI+SG
Sbjct: 121 YKVLMIGRFLGGIATSLLFSAFESWLIAEHNKRGFSDQWLSTTFSKAAFLGNGLVAIISG 180

Query: 184 LFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAI 243
           LF NLL D F  GPVAPFDAAACFLAIGM IIL++W+ENYGDPS+ KDL  QF+ AA AI
Sbjct: 181 LFANLLADRFGFGPVAPFDAAACFLAIGMAIILNTWSENYGDPSDKKDLKEQFKVAAQAI 240

Query: 244 ASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASR 303
           ASD  +  LG +QSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSS+A+R
Sbjct: 241 ASDPNVFCLGLVQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSVAAR 300

Query: 304 LMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGF 358
           L+ R   RVESYMQIVF++S+V L LPIVTS LV PS VK  G+S    +QLLGF
Sbjct: 301 LLQRH-LRVESYMQIVFLLSAVCLSLPIVTSVLVTPSKVKDDGLSLVFGIQLLGF 354

This family consists of several eukaryotic proteins of unknown function. Length = 354

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 50.1 bits (120), Expect = 9e-07
 Identities = 72/353 (20%), Positives = 120/353 (33%), Gaps = 23/353 (6%)

Query: 43  LLVYSLMMAGDWLQGP-YVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGR 101
            L   L   G  L GP    YL    G    EIG L  A      L   + G L+D+ GR
Sbjct: 2   FLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGR 61

Query: 102 KRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQ 160
           +R  +   L + L   +   +    +L++ R+L G+    LF A  + L+A+        
Sbjct: 62  RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAA-LIADWFPPEERG 120

Query: 161 QWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWT 220
           + L +     +  G GL A L  L G LL   F         A    LA  +  +L    
Sbjct: 121 RALGL-----LSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRP 175

Query: 221 E-NYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDE 279
                 P  +++       A   +  D  + LL A+            +L          
Sbjct: 176 PPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLS 235

Query: 280 EIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAP 339
            +  G +     L   +G  L  RL  R   R    + ++ ++ +   L  +        
Sbjct: 236 ALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALL-------- 287

Query: 340 SNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFF 392
                  ++ S    L+         G+ +P++  + S   P+E R T    +
Sbjct: 288 ------SLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLY 334

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 72/395 (18%), Positives = 133/395 (33%), Gaps = 60/395 (15%)

Query: 43  LLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRK 102
            L + L      L  P +  L    G    + G +  A      L   + G L+D+ GR+
Sbjct: 5   FLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRR 64

Query: 103 RA-CVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQ 161
           R   +   L  + S +   +    +L++GR L G+    L+ A  + +        F  +
Sbjct: 65  RVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEW-----FPPK 119

Query: 162 WLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTE 221
                       G GL A+L  L G LL +S     +    A    L   +++ L     
Sbjct: 120 ERGRALG-LFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFL----- 173

Query: 222 NYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEI 281
                                     ++ LL A+        Y  +  + P        +
Sbjct: 174 -------------------------LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGL 208

Query: 282 PH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVA 338
                G + + F L  +LG+ L   L  R   R    + I  +++++ LLL  +   L  
Sbjct: 209 SAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLL-IGLLLAALGLLLLALAPSLAL 267

Query: 339 PSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIM----NFFRI 394
                           L+        +G  +P+++ + S+  P EAR T       F  +
Sbjct: 268 L---------------LVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSL 312

Query: 395 PLNIFVCVVLYNVDAFPITVMFGMCSIFLLVASVL 429
              +   +    +D      +F + +   L+A++L
Sbjct: 313 GGALGPLLAGLLLDTGGYGGVFLILAALALLAALL 347

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	452
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	100.0
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.98
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.97
PRK03545	390	putative arabinose transporter; Provisional	99.97
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.97
PRK09952	438	shikimate transporter; Provisional	99.97
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.97
PRK09705	393	cynX putative cyanate transporter; Provisional	99.97
PRK15075	434	citrate-proton symporter; Provisional	99.97
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.97
PRK10642	490	proline/glycine betaine transporter; Provisional	99.97
PLN00028	476	nitrate transmembrane transporter; Provisional	99.96
PRK11663	434	regulatory protein UhpC; Provisional	99.96
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.96
PRK10489	417	enterobactin exporter EntS; Provisional	99.96
PRK05122	399	major facilitator superfamily transporter; Provisi	99.96
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.96
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.96
TIGR00891	405	2A0112 putative sialic acid transporter.	99.96
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.96
PRK09874	408	drug efflux system protein MdtG; Provisional	99.96
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.96
PRK10133	438	L-fucose transporter; Provisional	99.96
TIGR00900	365	2A0121 H+ Antiporter protein.	99.96
PRK12307	426	putative sialic acid transporter; Provisional	99.96
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.96
PRK10091	382	MFS transport protein AraJ; Provisional	99.96
PRK12382	392	putative transporter; Provisional	99.96
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.96
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.96
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.95
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.95
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.95
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.95
PRK03699	394	putative transporter; Provisional	99.95
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.95
PRK15011	393	sugar efflux transporter B; Provisional	99.95
PRK03893	496	putative sialic acid transporter; Provisional	99.95
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.95
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.95
TIGR00893	399	2A0114 d-galactonate transporter.	99.95
PRK10504	471	putative transporter; Provisional	99.95
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.95
PRK03633	381	putative MFS family transporter protein; Provision	99.95
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.95
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.95
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.94
PRK10054	395	putative transporter; Provisional	99.94
PRK11043	401	putative transporter; Provisional	99.94
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.94
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.94
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.94
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.94
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.94
TIGR00895	398	2A0115 benzoate transport.	99.94
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.94
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.94
TIGR00898	505	2A0119 cation transport protein.	99.94
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.93
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.93
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.93
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.93
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.93
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.93
TIGR00901	356	2A0125 AmpG-related permease.	99.93
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.93
PRK11902	402	ampG muropeptide transporter; Reviewed	99.93
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.93
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.93
PRK11010	491	ampG muropeptide transporter; Validated	99.92
PRK09528	420	lacY galactoside permease; Reviewed	99.92
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.91
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.91
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.91
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.9
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.9
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.9
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.9
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.89
KOG0569	485	consensus Permease of the major facilitator superf	99.89
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.88
KOG0254	513	consensus Predicted transporter (major facilitator	99.87
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.87
KOG2533	495	consensus Permease of the major facilitator superf	99.87
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.87
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.87
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.86
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.86
KOG2532	466	consensus Permease of the major facilitator superf	99.86
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.85
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.85
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.84
TIGR00805	633	oat sodium-independent organic anion transporter.	99.84
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.83
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.82
KOG2615	451	consensus Permease of the major facilitator superf	99.82
PRK09669	444	putative symporter YagG; Provisional	99.81
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.79
PF13347	428	MFS_2: MFS/sugar transport protein	99.79
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.78
PRK09848	448	glucuronide transporter; Provisional	99.78
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.77
PRK10429	473	melibiose:sodium symporter; Provisional	99.76
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.76
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.75
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.75
COG2211	467	MelB Na+/melibiose symporter and related transport	99.74
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.74
PTZ00207	591	hypothetical protein; Provisional	99.73
KOG2563	480	consensus Permease of the major facilitator superf	99.68
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.68
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.66
PRK11462	460	putative transporter; Provisional	99.66
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.64
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.57
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.53
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.48
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.44
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.27
PRK09528	420	lacY galactoside permease; Reviewed	99.24
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.24
PRK15011	393	sugar efflux transporter B; Provisional	99.21
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.17
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.16
PRK05122	399	major facilitator superfamily transporter; Provisi	99.15
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.14
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.13
PRK09705	393	cynX putative cyanate transporter; Provisional	99.13
PRK09874	408	drug efflux system protein MdtG; Provisional	99.12
PRK10489	417	enterobactin exporter EntS; Provisional	99.11
PRK03633	381	putative MFS family transporter protein; Provision	99.1
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.09
PRK03545	390	putative arabinose transporter; Provisional	99.08
PRK03699	394	putative transporter; Provisional	99.07
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.07
KOG3626	735	consensus Organic anion transporter [Secondary met	99.04
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.03
PRK10642	490	proline/glycine betaine transporter; Provisional	99.01
PRK10054	395	putative transporter; Provisional	99.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.99
PRK12382	392	putative transporter; Provisional	98.98
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.96
PRK09952	438	shikimate transporter; Provisional	98.96
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.95
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.94
PRK11663	434	regulatory protein UhpC; Provisional	98.94
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.94
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.92
PRK10091	382	MFS transport protein AraJ; Provisional	98.91
PRK10504	471	putative transporter; Provisional	98.9
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.9
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.89
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.89
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.87
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.87
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.86
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.86
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.86
TIGR00891	405	2A0112 putative sialic acid transporter.	98.85
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.85
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.84
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.84
PRK11010	491	ampG muropeptide transporter; Validated	98.83
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.83
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.83
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.83
PRK15075	434	citrate-proton symporter; Provisional	98.83
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.83
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.81
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.8
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.8
TIGR00900	365	2A0121 H+ Antiporter protein.	98.8
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.79
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.77
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.77
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.76
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.76
PRK09848	448	glucuronide transporter; Provisional	98.75
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.74
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.74
KOG3762	618	consensus Predicted transporter [General function	98.73
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.73
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.72
KOG0637	498	consensus Sucrose transporter and related proteins	98.72
PRK11902	402	ampG muropeptide transporter; Reviewed	98.72
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.72
TIGR00895	398	2A0115 benzoate transport.	98.71
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.71
TIGR00893	399	2A0114 d-galactonate transporter.	98.71
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.7
PRK12307	426	putative sialic acid transporter; Provisional	98.7
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.7
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.67
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.66
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.65
PRK11043	401	putative transporter; Provisional	98.65
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.65
PRK09669	444	putative symporter YagG; Provisional	98.63
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.61
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.61
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.6
PF13347	428	MFS_2: MFS/sugar transport protein	98.6
PRK03893	496	putative sialic acid transporter; Provisional	98.59
PLN00028	476	nitrate transmembrane transporter; Provisional	98.59
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.57
TIGR00901	356	2A0125 AmpG-related permease.	98.57
PRK10133	438	L-fucose transporter; Provisional	98.57
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.56
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.56
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.56
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.53
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.52
PRK10429	473	melibiose:sodium symporter; Provisional	98.51
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.5
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.48
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.45
KOG3810	433	consensus Micronutrient transporters (folate trans	98.44
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.44
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.43
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.43
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.43
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.42
KOG2615	451	consensus Permease of the major facilitator superf	98.4
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.38
KOG0569	485	consensus Permease of the major facilitator superf	98.37
PRK11462	460	putative transporter; Provisional	98.37
COG2211	467	MelB Na+/melibiose symporter and related transport	98.36
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.35
TIGR00898	505	2A0119 cation transport protein.	98.32
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.31
TIGR00805	633	oat sodium-independent organic anion transporter.	98.3
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.25
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.25
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.24
COG0477	338	ProP Permeases of the major facilitator superfamil	98.23
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.21
PF12832	77	MFS_1_like: MFS_1 like family	98.19
PTZ00207	591	hypothetical protein; Provisional	98.08
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.04
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.0
KOG0254	513	consensus Predicted transporter (major facilitator	97.98
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.94
KOG2532	466	consensus Permease of the major facilitator superf	97.89
KOG3762	618	consensus Predicted transporter [General function	97.85
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.82
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.81
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.79
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.72
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.7
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.69
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.54
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.44
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	97.4
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.38
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.29
KOG2533	495	consensus Permease of the major facilitator superf	97.19
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.11
KOG3097	390	consensus Predicted membrane protein [Function unk	97.09
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	96.93
KOG2563	480	consensus Permease of the major facilitator superf	96.7
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	96.56
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.43
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	95.95
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	95.9
PF12832	77	MFS_1_like: MFS_1 like family	95.78
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	95.73
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	95.66
KOG2816	463	consensus Predicted transporter ADD1 (major facili	95.18
KOG3880	409	consensus Predicted small molecule transporter inv	94.87
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	94.75
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	94.34
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	93.08
KOG0637	498	consensus Sucrose transporter and related proteins	92.77
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	91.59
PRK03612	521	spermidine synthase; Provisional	90.93
COG0477	338	ProP Permeases of the major facilitator superfamil	90.64
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	90.2
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	90.19
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	89.67
KOG3098	461	consensus Uncharacterized conserved protein [Funct	88.16
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	87.75
COG3202	509	ATP/ADP translocase [Energy production and convers	86.5
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	83.48
PRK03612	521	spermidine synthase; Provisional	81.77
KOG3626	735	consensus Organic anion transporter [Secondary met	80.56

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.3e-41  Score=284.20  Aligned_cols=425  Identities=87%  Similarity=1.411  Sum_probs=375.1

Q ss_pred             CcchhhHHHHHHHHHHHHHhhccccccCCCCCCccchhhHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCcchhHHHHHH
Q 012965            1 MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIA   80 (452)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~g~s~~~~g~~~~~   80 (452)
                      ||.|||++++++..+|+.+|+++.++++.+.++.+.+++..++.++.+++.++|+++|++.++++.||....++|.++..
T Consensus         1 MevfyylvFggl~a~vagLELSk~nkdRintsssFnsFknnyllVyslmmAgDWLQgPYvYyLYstYgFgkG~IgqLfia   80 (454)
T KOG4332|consen    1 MEVFYYLVFGGLAAVVAGLELSKCNKDRINTSSSFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGDIGQLFIA   80 (454)
T ss_pred             CeeeehHHHHHHHHHHHHhhhhhcccccccCchhHHHHhhhHHHHHHHHHhhhhhcCceeeeeehhcCccCCccceeeec
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhccccccccccccCcchHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc-ccccch
Q 012965           81 GFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFE  159 (452)
Q Consensus        81 ~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~-~~r~~~  159 (452)
                      ++...++++.+.|.++||-|||+.-+.-++.+.++++.-.++.|..++++|.+.|++.+..+.+-.+|++.|+ ++|+..
T Consensus        81 GfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~Fe  160 (454)
T KOG4332|consen   81 GFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFE  160 (454)
T ss_pred             ccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCCh
Confidence            9999999999999999999999998888888888888899999999999999999999999999999999999 699999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHh
Q 012965          160 QQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGA  239 (452)
Q Consensus       160 ~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (452)
                      ..+....++-....|+.+-.+++++.+..+.++.+.|...+|...+.+..+...+....|.|+.+++.+.++..++.+..
T Consensus       161 qqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~~W~ENygdps~~kdlltqf~ga  240 (454)
T KOG4332|consen  161 QQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSENYGDPSENKDLLTQFKGA  240 (454)
T ss_pred             HhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhhccCChhhhHHHHHHhhHh
Confidence            99999999989989999999999999999999999999999999888888888777778999988888888777888888


Q ss_pred             hHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCchHHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHH
Q 012965          240 AVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIV  319 (452)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~  319 (452)
                      .+.+..|++...+..+..++...+|.++..|.|..-.+..+.+.|.+++.++..+++|+-+..++..|-..|.+..+.+.
T Consensus       241 a~aiaSD~ki~LLG~iqsLFE~smytFVFLWTPaLspn~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqiv  320 (454)
T KOG4332|consen  241 ARAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIV  320 (454)
T ss_pred             HHHHhcchHHHHHHHHHHHHhhhhheeeeeecccCCCCcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHH
Confidence            88899999999999999999999999999999998877777778999999999999999999998888776766678888


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhhhhHH
Q 012965          320 FVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIF  399 (452)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~  399 (452)
                      +.+....+.++...... .|..   .++    ...+++++++..+.|..||...-+-++..|++.|++.+.+++.+.+.+
T Consensus       321 f~vs~a~l~Lpilt~~v-sP~k---es~----~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLnif  392 (454)
T KOG4332|consen  321 FLVSIAALLLPILTSSV-SPSK---ESP----SESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNIF  392 (454)
T ss_pred             HHHHHHHHHHHHHHhcc-CCCc---CCc----hHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhHh
Confidence            88777777777665543 2221   122    245889999999999999999999999999999999999999999998


Q ss_pred             HHHHHhc--cccCCc--hHHHHHHHHHHHHHHHHHHhh
Q 012965          400 VCVVLYN--VDAFPI--TVMFGMCSIFLLVASVLQRRL  433 (452)
Q Consensus       400 ~~~~l~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~  433 (452)
                      +...++.  ....+.  ...+.+|......+.+..++.
T Consensus       393 vClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~~~~L  430 (454)
T KOG4332|consen  393 VCLVLYNLHVDAFPTTTRNMFGICSAFLFVASILQRRL  430 (454)
T ss_pred             hhhhheecccccCccccchhhhhhHHHHHHHHHHHHHH
Confidence            8877754  233333  477888887777766655544

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=100.00  E-value=1.3e-36  Score=270.27  Aligned_cols=335  Identities=63%  Similarity=1.067  Sum_probs=295.9

Q ss_pred             hhhHHHHHHHHHHHHHhhccccccCCCCCCccchhhHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCcchhHHHHHHHHh
Q 012965            4 FFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFG   83 (452)
Q Consensus         4 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~   83 (452)
                      |||++|++++.+|+.+|+.++++++..+++.++++|+.++.++.+...+|++|+|++..+++++|++..|++.++..++.
T Consensus         1 ~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~f~~Fqr~yl~vY~La~~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~   80 (354)
T PF05631_consen    1 FYYLVFGVLAAVCAALELSKRTKDRASTNPAFRRFQRKYLLVYLLAMAADWLQGPYLYALYESYGFSEHQIAILFVAGFA   80 (354)
T ss_pred             CchhHHHHHHHHHHHHheecccccccccChHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHH
Confidence            79999999999999999999988888888899999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccccccccccCcchHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhcccccchhhHH
Q 012965           84 SSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWL  163 (452)
Q Consensus        84 ~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~  163 (452)
                      .+.+.+++.|.++||+|||+.-+..++++++++++-..++++.++++|++.|++.+..+.+-.+|++.|+++|+....+.
T Consensus        81 Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L  160 (354)
T PF05631_consen   81 SSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWL  160 (354)
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            99999999999999999999999999999999988889999999999999999999999999999999998899888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHh
Q 012965          164 SITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAI  243 (452)
Q Consensus       164 ~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (452)
                      ...++.....++++-.+.++.++..+.+..+.+...||.....+..++.+++...|+|+.++.++..+..++.++..+.+
T Consensus       161 ~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~~~~~a~~~i  240 (354)
T PF05631_consen  161 SDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSSLSGSFREAWRAI  240 (354)
T ss_pred             HHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccccchHHHHHHHHHHH
Confidence            88777655577888888889999988887777778999999998888888888889998877555555566777778889


Q ss_pred             hcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCchHHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHH
Q 012965          244 ASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVS  323 (452)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~  323 (452)
                      .+||+.+.+.....++.+.+|.++..|.|.+..++.+.+.|.+++.+++..++|+.+..++..|- .|.+..+.....+.
T Consensus       241 ~~d~ril~LG~~qslFE~smy~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~-~~~e~~l~~v~~~a  319 (354)
T PF05631_consen  241 LSDPRILLLGLIQSLFEGSMYLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLGSSLFSRLLSKS-LRPESLLRYVFAVA  319 (354)
T ss_pred             HcCchhHHHHHHHHHHHHHHHHheeeeeceecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence            99999999999999999999999999999988666677779999999999999999997766554 46666667777777


Q ss_pred             HHHHHHHHHHhhhcCC
Q 012965          324 SVSLLLPIVTSFLVAP  339 (452)
Q Consensus       324 ~~~~~~~~~~~~~~~~  339 (452)
                      ++++..+........|
T Consensus       320 a~~l~~pv~~~~~~~p  335 (354)
T PF05631_consen  320 AVSLAIPVVTHIFGQP  335 (354)
T ss_pred             HHHHHHHHHHhhccCC
Confidence            7777777666444333

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=8.4e-30  Score=232.40  Aligned_cols=349  Identities=16%  Similarity=0.196  Sum_probs=245.5

Q ss_pred             HHHhhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHH
Q 012965           49 MMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKIL  127 (452)
Q Consensus        49 ~~~~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l  127 (452)
                      ....+.+..+.+|++.+|+|+|..+.|+..+.+..+..+++|+...+.||+.||++++..+.++.++. ++++++||+.+
T Consensus        25 igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~L  104 (394)
T COG2814          25 IGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVL  104 (394)
T ss_pred             HHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            33456666999999999999999999999999888888999999999999999999999999999986 78999999999


Q ss_pred             HHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHH
Q 012965          128 MIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAA  204 (452)
Q Consensus       128 ~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~  204 (452)
                      +++|++.|++.|..++...+ +..+.   ++|++..+...        .|..++.++|.+++.++.+.  ||||..|...
T Consensus       105 l~aR~~~g~a~G~f~~i~~~-~a~~lvpp~~~~~Aiaiv~--------~G~tlA~v~GvPLGt~ig~~--~GWR~~F~~i  173 (394)
T COG2814         105 LLARALAGLAHGVFWSIAAA-LAARLVPPGKRGRALALVF--------TGLTLATVLGVPLGTFLGQL--FGWRATFLAI  173 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHcCccchhhHHHHHH--------HHHHHHHHHhccHHHHHHHH--hhHHHHHHHH
Confidence            99999999999999998855 65555   55666555332        23444445555555555533  6788999999


Q ss_pred             HHHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch-
Q 012965          205 ACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH-  283 (452)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-  283 (452)
                      +.+.++.....+...|+++ ++++.+..    .++..+.+|+|+.+.......+...+.+.. .+|.-.++++..+.+. 
T Consensus       174 a~l~ll~~~~~~~~lP~~~-~~~~~~~~----~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~-ftYi~P~L~~v~g~s~~  247 (394)
T COG2814         174 AVLALLALLLLWKLLPPSE-ISGSLPGP----LRTLLRLLRRPGVLLGLLATFLFMTGHFAL-YTYIRPFLESVAGFSVS  247 (394)
T ss_pred             HHHHHHHHHHHHHhCCCcc-CCCCCCcc----hhHHHHHhcCchHHHHHHHHHHHHcchhhh-HHhHHHHHHHccCCCHh
Confidence            9999988888887888111 11111111    112235678899998888888888877774 6666667777777655 


Q ss_pred             --HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHH
Q 012965          284 --GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTF  361 (452)
Q Consensus       284 --~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (452)
                        +.....++++.++|+.++|++.|| +.|+  .+.....+.......+.+....              .+.......++
T Consensus       248 ~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~--~l~~~~~l~a~~~l~l~~~~~~--------------~~~~~~~~~~w  310 (394)
T COG2814         248 AVSLVLLAFGIAGFIGNLLGGRLADR-GPRR--ALIAALLLLALALLALTFTGAS--------------PALALALLFLW  310 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccc-cchh--HHHHHHHHHHHHHHHHHHhcch--------------HHHHHHHHHHH
Confidence              577788899999999999999999 6555  2444444444444443333332              13445555557


Q ss_pred             HHHhhchhhHHHHHHhhcCCcccccchhhhhhhhh------hHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHhhh
Q 012965          362 EACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPL------NIFVCVVLYNVDAFPITVMFGMCSIFLLVASVLQRRLM  434 (452)
Q Consensus       362 g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (452)
                      ++......+..+....+.. ++.+..+.+++....      +..+|+.+.+.  +++......+++..+.+..+.....
T Consensus       311 g~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~--~g~~~~~~~~a~l~~~a~~~~~~~~  386 (394)
T COG2814         311 GFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDA--LGYAATGWVGAALLLLALLLALLSA  386 (394)
T ss_pred             HHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777666666666666633 445677776665543      34666777777  5555555555555555554444333

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.98  E-value=2.1e-29  Score=243.68  Aligned_cols=333  Identities=14%  Similarity=0.145  Sum_probs=202.7

Q ss_pred             hHHHHHHHHHHHHhhhhh----hhhHHHHHhhcC---CCcch---hHHHHHHHHhhhhhccccccccccccCcchHHHHH
Q 012965           39 KNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYG---FGKGE---IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTY  108 (452)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~----~p~l~~i~~~~g---~s~~~---~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~  108 (452)
                      +++.+....+....+++|    ....|.+.++++   .+..+   .+.+++..++...++++++|+++||+||||++..+
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~   99 (432)
T PRK10406         20 RIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLIS   99 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            344455555556666666    444566778874   44443   34566677776778888999999999999999999


Q ss_pred             HHHHHHHH-HHhcCccHH--------HHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHH
Q 012965          109 CLTYILSC-ITKHSPQYK--------ILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNG  176 (452)
Q Consensus       109 ~~~~~i~~-l~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~  176 (452)
                      ..+++++. ++++++++.        .+++.|+++|++.|..++...+ +++|+   ++|++..+    ....+...|..
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~-~i~e~~p~~~rg~~~~----~~~~~~~~G~~  174 (432)
T PRK10406        100 VCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSAT-YMSEVAVEGRKGFYAS----FQYVTLIGGQL  174 (432)
T ss_pred             HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHH-HHHHhCCCCcccHHHH----HHHHHHHHHHH
Confidence            99999976 678888764        5899999999999999998866 88888   33443333    23333344444


Q ss_pred             HHHHHHHhhhhhhhc--ccCCCcchhhHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHH
Q 012965          177 LVAILSGLFGNLLVD--SFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGA  254 (452)
Q Consensus       177 ig~~~~~~l~~~l~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (452)
                      +++.+...+...+.+  ...|+||.+|.+.++..++..++ ....||+++.++++    ++.+.+.++++|+++.+....
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~-~~~~~e~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~  249 (432)
T PRK10406        175 LALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWL-RRQLDETSQQETRA----LKEAGSLKGLWRNRRAFIMVL  249 (432)
T ss_pred             HHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHH-HhcCCCCchHHHhh----hcccccHHHHHhhHHHHHHHH
Confidence            444443333322211  12578999998877766654333 22445543221111    011223556777887776655


Q ss_pred             HHHhh-hchhhhhhhhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHH
Q 012965          255 IQSLF-EGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLP  330 (452)
Q Consensus       255 ~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~  330 (452)
                      ...+. ....+. ...|.|.++++..+.+.   +.......+...++..+.|+++||++||+.  +.....+..+.....
T Consensus       250 ~~~~~~~~~~~~-~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~--~~~~~~~~~~~~~~~  326 (432)
T PRK10406        250 GFTAAGSLCFYT-FTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTS--MLCFGSLAALFTVPI  326 (432)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH--HHHHHHHHHHHHHHH
Confidence            54443 333343 57899998876666544   445555566778888899999999998873  333322222222111


Q ss_pred             HHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          331 IVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      ...... .      .+.    ........+..+..+...+..+.+.+|.+|++.|++++|+.+..
T Consensus       327 ~~~~~~-~------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~  380 (432)
T PRK10406        327 LSALQN-V------SSP----YAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAV  380 (432)
T ss_pred             HHHHHc-C------CcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHH
Confidence            111111 0      000    11112222222333334456778899999999999999987654

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.97  E-value=3e-29  Score=244.87  Aligned_cols=336  Identities=16%  Similarity=0.034  Sum_probs=210.2

Q ss_pred             hhhHHHHHHHHHHHHhhhhh----hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHH
Q 012965           37 SFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTY  112 (452)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~----~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~  112 (452)
                      |..+..+..+++......++    ++..|.+.+|+|+|..+.|++.+..+....++.++.|+++||+|||+++..+.++.
T Consensus        25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~  104 (467)
T PRK09556         25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILS  104 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHH
Confidence            33344455555555554544    67788999999999999999988888888888999999999999999998888877


Q ss_pred             HHHH-HH-----hcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 012965          113 ILSC-IT-----KHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSG  183 (452)
Q Consensus       113 ~i~~-l~-----~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~  183 (452)
                      ++.. +.     +.++|++.+++.|+++|++.+...|.... +++|+   ++|++..+.....    ..    +|+.+++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~-~i~~~~~~~~rg~a~gi~~~~----~~----lG~~l~~  175 (467)
T PRK09556        105 AICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYS-TITRWTPRRKRGRFLGFWNIS----HN----LGGAGAG  175 (467)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHH-HHHHHcCccceeeeEEeeecc----cc----hhhhHHH
Confidence            6643 32     34789999999999999999998888766 78877   4577766644332    22    3444444


Q ss_pred             hhhhhhhccc-CCCcchhhHHHHHHHHHHHHHHHhcc---ccccCCCCc------c---hhH---HHH--HHHh-hHHhh
Q 012965          184 LFGNLLVDSF-SLGPVAPFDAAACFLAIGMVIILSSW---TENYGDPSE------S---KDL---LTQ--FRGA-AVAIA  244 (452)
Q Consensus       184 ~l~~~l~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~---~~~~~~~~~------~---~~~---~~~--~~~~-~~~~~  244 (452)
                      .+..++.+.. +.+|+..|...+++.++..++.....   ||+.+..++      .   ++.   .++  ..+. .+..+
T Consensus       176 ~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  255 (467)
T PRK09556        176 GVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVL  255 (467)
T ss_pred             HHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHH
Confidence            4444333321 22467777766655554433333222   322110000      0   000   000  0111 22367


Q ss_pred             cchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHH
Q 012965          245 SDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFV  321 (452)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~  321 (452)
                      +++.++...+...+.....+. ...|.|.|+++..|.+.   +.......++.+++.++.|+++||++||+.  ......
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~-~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~--~~~~~~  332 (467)
T PRK09556        256 KNPVIWLLCFANIFLYIVRIG-IDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRA--LVACIA  332 (467)
T ss_pred             cChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch--HHHHHH
Confidence            888888887776666665554 58899999987777755   455566778899999999999999998873  222222


Q ss_pred             HHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhhhh
Q 012965          322 VSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLN  397 (452)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~  397 (452)
                      ........... ... .       +    .+...+..++.|+..............|.+|++.|+++.|+.+...+
T Consensus       333 ~~~~~~~~~~~-~~~-~-------~----~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~  395 (467)
T PRK09556        333 LALIIFTLGVY-QHA-T-------S----EYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAY  395 (467)
T ss_pred             HHHHHHHHHHH-Hhc-C-------c----HHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Confidence            22222111111 111 0       0    01233444444543322223334667799999999999999876533

>PRK03545 putative arabinose transporter; Provisional

Probab=99.97  E-value=4.2e-28  Score=231.73  Aligned_cols=338  Identities=15%  Similarity=0.129  Sum_probs=223.1

Q ss_pred             hhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHH
Q 012965           55 LQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRIL  133 (452)
Q Consensus        55 ~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l  133 (452)
                      ...|++|.+.+|+|.|+++.|++.+...+...+++++.|+++||+||||++..+..+.+++. .+++++|++.+++.|++
T Consensus        27 ~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~  106 (390)
T PRK03545         27 VPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIG  106 (390)
T ss_pred             HHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            34677899999999999999999888887777888899999999999999999999998876 67899999999999999


Q ss_pred             HHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHH
Q 012965          134 GGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAI  210 (452)
Q Consensus       134 ~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~  210 (452)
                      +|++.+...+...+ ++.|.   ++|++..+..    +    .+..+|..+++.+++.+.++  ++||..|.+.+++.++
T Consensus       107 ~G~~~~~~~~~~~~-~i~~~~~~~~r~~~~g~~----~----~~~~~g~~ig~~l~~~l~~~--~gw~~~f~~~~~~~~l  175 (390)
T PRK03545        107 IAFAHAIFWSITAS-LAIRVAPAGKKAQALSLL----A----TGTALAMVLGLPLGRVIGQY--LGWRTTFLAIGGGALI  175 (390)
T ss_pred             HHHHHHHHHHHHHH-HHHHhCChhhhhhHHHHH----H----HHHHHHHHHHhhHHHHHHHH--hcHHHHHHHHHHHHHH
Confidence            99999988887756 66665   4555544432    2    23445556666666655543  4667788887776665


Q ss_pred             HHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HHHH
Q 012965          211 GMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIF  287 (452)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~  287 (452)
                      .........||+++++++   .    .++.++.+|+++++.......+.....+. ...+.|.+.++..+.+.   +...
T Consensus       176 ~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~g~s~~~~~~~~  247 (390)
T PRK03545        176 TLLLLIKLLPLLPSEHSG---S----LKSLPLLFRRPALVSLYLLTVVVVTAHFT-AYSYIEPFVQQVAGLSENFATLLL  247 (390)
T ss_pred             HHHHHHHhCCCCCCCCcc---h----HHHHHHHHhCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccHHHHHH
Confidence            555444444543322111   1    12344567778776554444333333333 34566666665555433   5666


Q ss_pred             HHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhc
Q 012965          288 ATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGI  367 (452)
Q Consensus       288 ~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  367 (452)
                      ....+++++++++.+++.||+++|+   +..+..+..............              .+...+...+.|++.+.
T Consensus       248 ~~~~~~~~~g~~~~g~l~dr~~~~~---~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~~~~l~g~~~~~  310 (390)
T PRK03545        248 LLFGGAGIIGSVLFSRLGNRHPSGF---LLIAIALLLVCLLLLLPAANS--------------EWHLSVLSIFWGIAIMC  310 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhhccchhH---HHHHHHHHHHHHHHHHHHhch--------------HHHHHHHHHHHHHHHhc
Confidence            7778899999999999999998765   333333333332222111111              02445566777777776


Q ss_pred             hhhHHHHHHhhcCCcccccchhhhhhhh------hhHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHH
Q 012965          368 FWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNVDAFPITVMFGMCSIFLLVASVLQR  431 (452)
Q Consensus       368 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (452)
                      ..+.......|..|+ .|++++|+.+..      .++.+++.+.+..  ++...+...+.+.+++.....
T Consensus       311 ~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~--g~~~~~~~~~~~~~~~~~~~~  377 (390)
T PRK03545        311 IGLAMQVKVLKLAPD-ATDVAMALFSGIFNIGIGAGALLGNQVSLHL--GLSSIGYVGAALALAALVWSI  377 (390)
T ss_pred             chHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ChhHHHHHHHHHHHHHHHHHH
Confidence            667777888888774 678887766543      3556677777763  444555555544444444433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.97  E-value=2.7e-28  Score=234.62  Aligned_cols=330  Identities=18%  Similarity=0.158  Sum_probs=212.9

Q ss_pred             chhhHHHHHHHHHHHHhhhhh----hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHH
Q 012965           36 NSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLT  111 (452)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~----~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~  111 (452)
                      ++++|..+..+....+.++++    ++..|.+.+|+|.|+.+.|++.+...+...+++++.|+++||+|||+++..+.++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   89 (406)
T PRK11551         10 SSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVAL   89 (406)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence            345666666666666666655    6777888999999999999999998888888899999999999999999999988


Q ss_pred             HHHHH-HHhcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012965          112 YILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGN  187 (452)
Q Consensus       112 ~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~  187 (452)
                      ..++. ++.++++++.+++.|++.|++.+...+...+ ++.|.   ++|++..+..    .    .+..+|..+++.++.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~----~----~~~~~g~~~~~~~~~  160 (406)
T PRK11551         90 FGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIA-LTSEAVGPRLRGTAVSLM----Y----CGVPFGGALASVIGV  160 (406)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHcCHHHHHHHHHHH----H----HHHHHHHHHHHHHHH
Confidence            88865 6688999999999999999999998887756 77776   3344443322    2    234455556666655


Q ss_pred             hhhcccCCCcchhhHHHHHHHHHHHHHHHhccccccCCCCcc--hhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhh
Q 012965          188 LLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSES--KDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYT  265 (452)
Q Consensus       188 ~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (452)
                      .+.+  .++|+..|.+.+++.++.........||++++++++  ++..++..+...+..++++.+............ +.
T Consensus       161 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  237 (406)
T PRK11551        161 LAAG--DAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEGRATATLLLWISYFFTLIV-LY  237 (406)
T ss_pred             HHcc--ccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHH-HH
Confidence            5543  356777887766555544444443456543221111  111111111111111112222222222222222 22


Q ss_pred             hhhhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 012965          266 FVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNV  342 (452)
Q Consensus       266 ~~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (452)
                      ....|.|.+.++ .+.+.   +.......++.++++++.|++.||+|||+.  +........+...........      
T Consensus       238 ~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~--~~~~~~~~~~~~~~~~~~~~~------  308 (406)
T PRK11551        238 FLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRV--VLLIYAGILASLAALAAAPSF------  308 (406)
T ss_pred             HHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHhcCcH------
Confidence            346678887765 34433   677777788999999999999999998773  333222222222222111111      


Q ss_pred             CCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          343 KSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                               +...+..++.+++.+...+..+++.+|.+|+++|+++.|+.+..
T Consensus       309 ---------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  352 (406)
T PRK11551        309 ---------AGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAV  352 (406)
T ss_pred             ---------HHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHh
Confidence                     23445556667777767788899999999999999999887764

>PRK09952 shikimate transporter; Provisional

Probab=99.97  E-value=5.4e-28  Score=233.82  Aligned_cols=335  Identities=15%  Similarity=0.082  Sum_probs=198.6

Q ss_pred             hhHHHHHHHHHHHHhhhhh----hhhHHH-HHhhc--CCCcchhHHHH-----HHHHhhhhhccccccccccccCcchHH
Q 012965           38 FKNNYLLVYSLMMAGDWLQ----GPYVYY-LYSTY--GFGKGEIGQLF-----IAGFGSSMLFGTIVGSLADKQGRKRAC  105 (452)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~----~p~l~~-i~~~~--g~s~~~~g~~~-----~~~~~~~~l~~~~~G~l~Dr~Grr~~l  105 (452)
                      ++++.....++....+++|    +.+.+. +.+++  +.++. .+.+.     ...++...+++++.|+++||+|||+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l   97 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence            3455666666677777777    333333 33455  66665 45432     345554557777899999999999999


Q ss_pred             HHHHHHHHHHH-HHhcCccHH--------HHHHHHHHHHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHH
Q 012965          106 VTYCLTYILSC-ITKHSPQYK--------ILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNG  176 (452)
Q Consensus       106 ~~~~~~~~i~~-l~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~  176 (452)
                      ..+.++++++. ++++++|++        .++++|+++|++.|..++.... ++.|+.+++++..     .......|..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~-~~~e~~p~~~rg~-----~~~~~~~g~~  171 (438)
T PRK09952         98 MLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAAL-LAVESAPKNKKAF-----YSSGVQVGYG  171 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHH-HHHHhCCCCCCcH-----HHHHHHHHHH
Confidence            99999999976 779999987        5889999999999999998855 8888833333321     1112233444


Q ss_pred             HHHHHHHhhhhhhhcc------cCCCcchhhHHHHHHHHHHHHHHHhccccccCCCCcchhH--HHHHHHhhHHhhcchh
Q 012965          177 LVAILSGLFGNLLVDS------FSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDL--LTQFRGAAVAIASDEK  248 (452)
Q Consensus       177 ig~~~~~~l~~~l~~~------~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  248 (452)
                      +|..++..+...+...      ..|+||.+|.+.++..++..+ .....||+++..++.++.  .++..+..+.++++++
T Consensus       172 ~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~-l~~~~~es~~~~~~~~~~~~~~~~~~~~~~l~~~~~  250 (438)
T PRK09952        172 VGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALW-VRNGMEESAEFEQQQHEQAAAKKRIPVIEALLRHPG  250 (438)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHH-HHHhCCCChhHHHHHhhcccccccCCHHHHHHHchH
Confidence            5555544443332211      247899999887766544332 222345543211110000  0000111223556676


Q ss_pred             HHHHHHHHHhhhchhhhhhhhhccccccCCCCCchHH---HHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHH
Q 012965          249 IALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGF---IFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSV  325 (452)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~  325 (452)
                      .+.......+.....+.....|.|.|.++..+.+...   .....++...++.++.|+++||+|||+.  +..+.....+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~--~~~~~~~~~~  328 (438)
T PRK09952        251 AFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRV--YITGALIGTL  328 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH--HHHHHHHHHH
Confidence            6665443333322223335678888887666766542   3334456677888899999999999873  3333332222


Q ss_pred             HHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhh
Q 012965          326 SLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFR  393 (452)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~  393 (452)
                      ........... .+.          .+......++.+++.+...+..+++..|.+|++.|+++.|+..
T Consensus       329 ~~~~~~~~~~~-~~~----------~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~  385 (438)
T PRK09952        329 SAFPFFMALEA-QSI----------FWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGY  385 (438)
T ss_pred             HHHHHHHHHHc-CCh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHH
Confidence            22111111111 000          0233344555667777777888999999999999988877743

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.97  E-value=1.2e-28  Score=221.65  Aligned_cols=340  Identities=15%  Similarity=0.124  Sum_probs=242.3

Q ss_pred             CCccchhhHHHHHHHHHHHHhhhhh----hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHH
Q 012965           32 SSAFNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVT  107 (452)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~----~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~  107 (452)
                      ++.++++|++++...++.+.+.++.    .-..|.+.+|.++|.+|+|.+.+..++...+.-.+.|.++||.+.|+.+..
T Consensus        20 ~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~   99 (448)
T COG2271          20 DKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAF   99 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehH
Confidence            4456788888888888888877766    556679999999999999977777776666777789999999999999999


Q ss_pred             HHHHHHHHH-HHhcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 012965          108 YCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSG  183 (452)
Q Consensus       108 ~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~  183 (452)
                      ++++.++.. +++++++.+.+.+..+++|...|...|.+.. .++.+   ++||...+    .++...++|.++.+.+..
T Consensus       100 gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~-~i~~Wfsr~eRG~~~s----iWn~shNiGGal~~~~~~  174 (448)
T COG2271         100 GLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCAR-TITHWFSRKERGTWWS----IWNTSHNIGGALAPLVAL  174 (448)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHH-HHHHHcCccccCceEE----EehhhhhcccchHHHHHH
Confidence            999999975 7799999999999999999999999999977 66666   56776666    345455555544444432


Q ss_pred             hhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHhccccccCC----------CCcchh-HH-------HHHHHhhHHhhc
Q 012965          184 LFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGD----------PSESKD-LL-------TQFRGAAVAIAS  245 (452)
Q Consensus       184 ~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~-~~-------~~~~~~~~~~~~  245 (452)
                      .  +.+..  .++||..|+..+++.++..++.+...++++++          +|+.+. .+       ...+.-.+.+++
T Consensus       175 l--a~~~~--~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~  250 (448)
T COG2271         175 L--AFFAF--HGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLK  250 (448)
T ss_pred             H--HHHHh--ccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHc
Confidence            2  55443  34788999999988887776666444443321          011110 00       011123456899


Q ss_pred             chhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccC--CCCchhHHHHHH
Q 012965          246 DEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARS--PPRVESYMQIVF  320 (452)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~--g~~~~~~~~~~~  320 (452)
                      ||..|.+++...+....-++ +..|.|.|+.|..|.+.   +...+.+-.++++|++++|+++||+  |||.  ...+.+
T Consensus       251 Nk~iW~la~a~vfvYivR~g-i~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~--p~~~i~  327 (448)
T COG2271         251 NKLIWLLALANVFVYVVRYG-INDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRG--PMALIF  327 (448)
T ss_pred             ChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccc--hHHHHH
Confidence            99999999999999999887 69999999988777755   5677778899999999999999996  4444  122222


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          321 VVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      .+....++. .+.... +      .    ..++..+.+++.|+......-..-..+.|..|++..|++.|+....
T Consensus       328 ~~~i~~~~~-~~w~~~-~------~----~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf  390 (448)
T COG2271         328 MLLITASLV-LYWLAP-N------G----SYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLF  390 (448)
T ss_pred             HHHHHHHHH-HHHcCC-C------c----cHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhH
Confidence            222222222 111111 0      1    1135555666666665555555667889999999999999887754

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.97  E-value=8.4e-28  Score=229.40  Aligned_cols=316  Identities=16%  Similarity=0.177  Sum_probs=205.0

Q ss_pred             hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHH
Q 012965           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G  135 (452)
                      .|.+|.+.+|+|+|.++.|++.+...+...+++++.|+++||+|||+++..+..+++++. ++++++|++.+++.|+++|
T Consensus        29 ~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~G  108 (393)
T PRK09705         29 GPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGG  108 (393)
T ss_pred             chhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHH
Confidence            899999999999999999999999888888999999999999999999999999999987 7799999999999999999


Q ss_pred             hHhhhhhhhhhhhhhhhc--ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHH
Q 012965          136 IATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMV  213 (452)
Q Consensus       136 ~~~~~~~~~~~~~~i~e~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~  213 (452)
                      ++.+...+.... ++.|+  ++|++..+    .++.+...|..+|+.+++    .+.++. .+||..+...++..++...
T Consensus       109 ig~~~~~~~~~~-~~~~~~~~~~~~~~g----~~~~~~~~g~~~g~~~~~----~l~~~~-~~w~~~~~~~~~~~~~~~~  178 (393)
T PRK09705        109 VGIGIIQAVMPS-VIKRRFQQRTPLVMG----LWSAALMGGGGLGAAITP----WLVQHS-ETWYQTLAWWALPAVVALF  178 (393)
T ss_pred             hHHHHHhhhhhH-HHHHHccccchhHHH----HHHHHHHHHHHHHHHHHH----HHHHhc-CCHHHHHHHHHHHHHHHHH
Confidence            999998887755 66766  33333333    333344444555554444    433322 2566655443333332222


Q ss_pred             HHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HHHHHHH
Q 012965          214 IILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATF  290 (452)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~  290 (452)
                      ......+++++ ++++++      ...++.+++++.+.......+.... +.....|.|.++++ .+.+.   +......
T Consensus       179 ~~~~~~~~~~~-~~~~~~------~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~  249 (393)
T PRK09705        179 AWWWQSAREVA-SSHKTT------TTPVRVVFTPRAWTLGVYFGLINGG-YASLIAWLPAFYIE-IGASAQYSGSLLALM  249 (393)
T ss_pred             HHHHHhcCCCc-cccCCC------cCCcccccCHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-cCCChhhhhHHHHHH
Confidence            22211111111 111111      0112345667776665555444444 33357788888875 45543   6677888


Q ss_pred             HHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhh
Q 012965          291 MLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWP  370 (452)
Q Consensus       291 ~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  370 (452)
                      .++.++++++.+++.||++||+.  ...+..+..+...........                .......+.+++.+...|
T Consensus       250 ~i~~i~g~~~~g~l~~r~~~~~~--~~~~~~l~~~~~~~~~~~~~~----------------~~~~~~~l~g~g~g~~~~  311 (393)
T PRK09705        250 TLGQAAGALLMPAMARHQDRRKL--LMLALVLQLVGFCGFIWLPLQ----------------LPVLWAMVCGLGLGGAFP  311 (393)
T ss_pred             HHHHHHHHHHHHHHHhhccchHH--HHHHHHHHHHHHHHHHHccch----------------HHHHHHHHHHHhccchHH
Confidence            89999999999999999998873  344433333333322211111                011223456777777778


Q ss_pred             HHHHHHhhcCC-cccccchhhhhhhh------hhHHHHHHHhcccc
Q 012965          371 SIMKMRSQYIP-EEARSTIMNFFRIP------LNIFVCVVLYNVDA  409 (452)
Q Consensus       371 ~~~~~~~~~~p-~~~r~~~~g~~~~~------~~~~~~~~l~~~~~  409 (452)
                      .......+..+ ++++++.+|+.+..      .++.+.+++.+..+
T Consensus       312 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g  357 (393)
T PRK09705        312 LCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG  357 (393)
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            77777777775 66788888876653      24455566666544

>PRK15075 citrate-proton symporter; Provisional

Probab=99.97  E-value=7.2e-28  Score=233.04  Aligned_cols=336  Identities=16%  Similarity=0.217  Sum_probs=199.2

Q ss_pred             hHHHHHHHHHHHHhhhhh----hhhHHHHHhhcCCCcchhHHHH-HH-----HHhhhhhccccccccccccCcchHHHHH
Q 012965           39 KNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLF-IA-----GFGSSMLFGTIVGSLADKQGRKRACVTY  108 (452)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~----~p~l~~i~~~~g~s~~~~g~~~-~~-----~~~~~~l~~~~~G~l~Dr~Grr~~l~~~  108 (452)
                      |++.....++..+.+.+|    .+..|.+.+|++.++.+.+... +.     .++...+++++.|+++||+||||+++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~   92 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT   92 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence            444566666677777776    7788899999999888765432 21     2222235567899999999999999999


Q ss_pred             HHHHHHHH-HHhcCccHH--------HHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHH
Q 012965          109 CLTYILSC-ITKHSPQYK--------ILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNG  176 (452)
Q Consensus       109 ~~~~~i~~-l~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~  176 (452)
                      ..++.++. +++++++++        .++++|+++|++.+...+.... +++|+   ++|++..+......+.+..+|..
T Consensus        93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~-~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~  171 (434)
T PRK15075         93 LSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSV-YLAEIATPGRKGFYTSWQSASQQVAVVFAAL  171 (434)
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHH-HHHhhCCcccchHHHHHHHHHHHHHHHHHHH
Confidence            99998876 778999987        4689999999999998887755 88887   55666555444433333333333


Q ss_pred             HHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHH
Q 012965          177 LVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQ  256 (452)
Q Consensus       177 ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (452)
                      +|..+...+.....  ..++||.+|.+......+ ........||+++..++  +..++.++..+...++++.+......
T Consensus       172 ~g~~l~~~~~~~~~--~~~gWr~~f~~~~~~~~~-~~~~~~~~~e~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (434)
T PRK15075        172 LGYLLNQWLSPAQM--AEWGWRIPFLIGCLIVPF-IFLIRRSLEETEEFLAR--KHRPSMREIFRSLAANWRIVLAGMLM  246 (434)
T ss_pred             HHHHHHHhCCHHHH--hccchHHHHHHHHHHHHH-HHHHHHhcCCCHHHHHh--hhccccccHHHHHHHhHHHHHHHHHH
Confidence            33333322222212  356788888775443322 22222223332110000  00001111222334455554443333


Q ss_pred             HhhhchhhhhhhhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHH
Q 012965          257 SLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVT  333 (452)
Q Consensus       257 ~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~  333 (452)
                      .+.....+.....|.|.|+++..+.+.   +.......++++++.++.|+++||+|||+.  ........... ..+...
T Consensus       247 ~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~--~~~~~~~~~~~-~~~~~~  323 (434)
T PRK15075        247 VAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPV--LIAFTVLAILT-AYPALS  323 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH--HHHHHHHHHHH-HHHHHH
Confidence            333333344468889999887666644   344556667889999999999999998873  33322222211 111111


Q ss_pred             hhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhh
Q 012965          334 SFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFR  393 (452)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~  393 (452)
                      .....      ++.    ........+.+++.+...+..+.+..|.+|++.|+++.|+.+
T Consensus       324 ~~~~~------~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~  373 (434)
T PRK15075        324 WLVAA------PSF----ARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAY  373 (434)
T ss_pred             HHHcC------Cch----HHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHH
Confidence            11101      000    112233344556666666777788999999999999988753

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.97  E-value=6.6e-28  Score=226.65  Aligned_cols=306  Identities=14%  Similarity=0.089  Sum_probs=197.9

Q ss_pred             hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHHHH-hcCccHHHHHHHHHHHH
Q 012965           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCIT-KHSPQYKILMIGRILGG  135 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~l~-~~~~~~~~l~~~r~l~G  135 (452)
                      .|.+|.+.+|+|+|++|.|++.+..++...+++++.|+++||+|||+++..+......+.+. ...+|++.+++.|+++|
T Consensus        11 ~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G   90 (368)
T TIGR00903        11 SPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAA   90 (368)
T ss_pred             HhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            78889999999999999999988888878888899999999999998876555544444433 33479999999999999


Q ss_pred             hHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHH
Q 012965          136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM  212 (452)
Q Consensus       136 ~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~  212 (452)
                      ++.+... .... .++|+   ++|++..+.        ...+..+|..+++.++..+.+  .++||..|.+.+++.++..
T Consensus        91 ~g~~~~~-~~~~-~~~~~~~~~~r~~a~~~--------~~~~~~lG~~l~~~~~~~l~~--~~gWr~~f~~~~~l~~~~~  158 (368)
T TIGR00903        91 LGQPFLL-NAFA-PAASQIREERRDLVISL--------LSFAMYLGIIFALAAGLKIYT--AGGLQLLIIPIAAVAAAGI  158 (368)
T ss_pred             hHhHHHH-HHHH-HHHHHcCHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH--ccchHHHHHHHHHHHHHHH
Confidence            9998653 3324 45665   334443332        223445566666666666654  3677888888777766665


Q ss_pred             HHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch--HHHHHHH
Q 012965          213 VIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH--GFIFATF  290 (452)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~~~~~  290 (452)
                      ++.....||+++++++..+. ++..++.++++++|.++.......+.....+. ..+|.|.|+++ .+.+.  +..... 
T Consensus       159 ~~~~~~lp~~p~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~-~~~wlp~~L~~-~g~s~~~~~~~~l-  234 (368)
T TIGR00903       159 ILVLAALPALPFQAAEGFGF-KDAVKEFGALAGRKDLWIIGAILGFGVALFDN-LAIWLEAALRP-AGLEDIAGDAVAL-  234 (368)
T ss_pred             HHHHHHcCCCCCCCCCCcch-HHHHHHHHHHHcChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-CCCChHHHHHHHH-
Confidence            55555677755432221111 12223466788999998888877777777666 58899999975 34433  223333 


Q ss_pred             HHHHHHHhHHHHHHhccCCCCchhHH-HH-HHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhch
Q 012965          291 MLASMLGSSLASRLMARSPPRVESYM-QI-VFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIF  368 (452)
Q Consensus       291 ~i~~~~~~~~~g~l~dr~g~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  368 (452)
                        ....+.+..++++||..||+.+.. .. .....++.+...   ....++            ........+.+++....
T Consensus       235 --~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~---~~~~~~------------~~~~~~~~l~~~~~~~~  297 (368)
T TIGR00903       235 --AILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLAL---AFELNR------------LALFAFIGIAGLLMLPA  297 (368)
T ss_pred             --HHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHH---HHcccc------------HHHHHHHHHHHHhhhhh
Confidence              333344445788888765432112 11 222222222121   111000            13344455566666667


Q ss_pred             hhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          369 WPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       369 ~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      ++..+++.+|.+|++.|+++.|+.+..
T Consensus       298 ~~~~~~~~~~~~p~~~rgt~~G~~~~~  324 (368)
T TIGR00903       298 YAIIMDWIGKFCDKELHGKAAGAIGFT  324 (368)
T ss_pred             HHHHHHHHHHhcchhhcCcccchhhHH
Confidence            777889999999999999999998874

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.97  E-value=1.4e-27  Score=234.23  Aligned_cols=332  Identities=18%  Similarity=0.174  Sum_probs=200.5

Q ss_pred             HHHHHHHHHHHHhhhhh----hhhHHHHHhhcCCCcch----hHH--HHHHHHhhhhhccccccccccccCcchHHHHHH
Q 012965           40 NNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGE----IGQ--LFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC  109 (452)
Q Consensus        40 ~~~~~~~~~~~~~~~~~----~p~l~~i~~~~g~s~~~----~g~--~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~  109 (452)
                      ++.+....+..+.+++|    +...|.+.++++.+.++    ++.  .++..++...+++++.|+++||+|||+++..+.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            34455556666667776    45566777888644322    222  245666767788889999999999999999999


Q ss_pred             HHHHHHH-HHhcCccHHH--------HHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHH
Q 012965          110 LTYILSC-ITKHSPQYKI--------LMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGL  177 (452)
Q Consensus       110 ~~~~i~~-l~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~i  177 (452)
                      ++++++. ++++++|++.        ++++|+++|++.|..++.... ++.|+   ++|++..+.    ...+..+|..+
T Consensus        95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~-~~~e~~p~~~Rg~~~~~----~~~~~~~G~~l  169 (490)
T PRK10642         95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASI-FVAEYSPDRKRGFMGSW----LDFGSIAGFVL  169 (490)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHH-HHHHhCCCCCCcHHHHH----HHHHHHHHHHH
Confidence            9999976 7799999875        899999999999999998866 88887   445554443    33333444444


Q ss_pred             HHHHHHhhhhhhhc--ccCCCcchhhHHHHHHHHHHHHHHHhccccccCCCCcchh----HH----HHHHHhhHHhhc-c
Q 012965          178 VAILSGLFGNLLVD--SFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKD----LL----TQFRGAAVAIAS-D  246 (452)
Q Consensus       178 g~~~~~~l~~~l~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~-~  246 (452)
                      |..+...+...+.+  ...|+||++|++.++..++..++ ....||+++..++.++    ..    ++.+.+.+++++ +
T Consensus       170 g~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (490)
T PRK10642        170 GAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYL-RHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKH  248 (490)
T ss_pred             HHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHH-HHcCCCChhHHHHHHhhhhhccccccccccCCHHHHHHHh
Confidence            44444444333221  13578999998877655544333 3355664321100000    00    000112333333 2


Q ss_pred             hhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHH
Q 012965          247 EKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVS  323 (452)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~  323 (452)
                      ++.+.......+.....+.....|.|.++++..+.+.   +.......++..++.++.|+++||+|||+.  +..+....
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~--~~~~~~~~  326 (490)
T PRK10642        249 WRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPF--VILGSVAL  326 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH--HHHHHHHH
Confidence            3333333222222223333357789998876556544   344455567788899999999999999873  33333222


Q ss_pred             HHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhh
Q 012965          324 SVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNF  391 (452)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~  391 (452)
                      .+........... +       +    .....++.++.+++.+...+....+..|.+|++.|++++|+
T Consensus       327 ~~~~~~~~~~~~~-~-------~----~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~  382 (490)
T PRK10642        327 FVLAIPAFILINS-N-------V----IGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAA  382 (490)
T ss_pred             HHHHHHHHHHHhC-C-------C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHH
Confidence            2221111111111 0       0    02334455666666666667778888999999999998886

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.96  E-value=1.3e-27  Score=233.27  Aligned_cols=340  Identities=13%  Similarity=0.077  Sum_probs=206.8

Q ss_pred             hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHH
Q 012965           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G  135 (452)
                      .|.+|.+.+|+|+|.++.+++.+...+...++.++.|+++||+|||+++..+.++.+++. +++++++++.+++.|++.|
T Consensus        56 ~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G  135 (476)
T PLN00028         56 APLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIG  135 (476)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            788889999999999999988777777666778899999999999999999998888876 5688999999999999999


Q ss_pred             hHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc---cCCCcchhhHHHHHHHH
Q 012965          136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS---FSLGPVAPFDAAACFLA  209 (452)
Q Consensus       136 ~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~---~~~~~~~~f~~~~~~~~  209 (452)
                      ++.+...+ ... +++|+   ++|+...+..    .....+|..+++.+.+.+...+.+.   ...+||..|.+.+++.+
T Consensus       136 ~~~~~~~~-~~~-~i~~~~~~~~rg~a~g~~----~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l  209 (476)
T PLN00028        136 FSLATFVS-CQY-WMSTMFNGKIVGTANGIA----AGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHI  209 (476)
T ss_pred             HHHHhhHH-HHH-HHHHhcChhheeHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Confidence            99886543 323 56776   3455554432    2233345555555555544433221   11468888988777766


Q ss_pred             HHHHHHHhccccccCCCC--cch----hHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch
Q 012965          210 IGMVIILSSWTENYGDPS--ESK----DLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH  283 (452)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  283 (452)
                      +..+.... .++++++.+  +.+    ...++..+..++.++++++|...+.........+. ...+.|.|+.+..+.+.
T Consensus       210 ~~~l~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~l~~~~g~s~  287 (476)
T PLN00028        210 IMGILVLT-LGQDLPDGNYRELKKSGTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELT-MDNIIAEYFYDRFGLSL  287 (476)
T ss_pred             HHHHHHHH-HcCcCCCCchhhHHhcCccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHH-HHhHHHHHHHHhcCCCH
Confidence            55444432 222221110  000    00011123345567788877766554444333333 46678888766566654


Q ss_pred             ---HHHHHHHHHHHHHHhHHHHHHhccCCCCch----hHHH-HHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHH
Q 012965          284 ---GFIFATFMLASMLGSSLASRLMARSPPRVE----SYMQ-IVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQL  355 (452)
Q Consensus       284 ---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (452)
                         +...+...++.++++++.|+++||++||+.    +... ....+.++.+...   ....        +    .+...
T Consensus       288 ~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~---~~~~--------~----~~~~~  352 (476)
T PLN00028        288 ETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWL---GRAN--------S----LGAAI  352 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHh---cccc--------h----HHHHH
Confidence               556667778899999999999999986521    1111 1111111211111   1110        0    01334


Q ss_pred             HHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhhh--hHHHHHHHhcccc-CCchHHHHHHH
Q 012965          356 LGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPL--NIFVCVVLYNVDA-FPITVMFGMCS  420 (452)
Q Consensus       356 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~--~~~~~~~l~~~~~-~~~~~~~~~~~  420 (452)
                      +..++.+++.+...+..+++..+..| +.++++.|+.+...  +..+++.+.+..+ .++...+...+
T Consensus       353 ~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~  419 (476)
T PLN00028        353 VVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMG  419 (476)
T ss_pred             HHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHH
Confidence            44555566655555666666777654 67899998877642  3444555544322 23444444433

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.96  E-value=1.3e-27  Score=231.14  Aligned_cols=361  Identities=12%  Similarity=0.011  Sum_probs=215.7

Q ss_pred             hhhHHHHHHHHHHHHhhhhh----hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHH
Q 012965           37 SFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTY  112 (452)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~----~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~  112 (452)
                      ++++.......+.....+++    .+.+|.+.+++|+|+.+.|++.+...+...+++++.|+++||+|||+++..+.++.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~   98 (434)
T PRK11663         19 YWRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIAT   98 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHH
Confidence            34445444444444444433    67788999999999999999988888888899999999999999999999999999


Q ss_pred             HHHH-HHhcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012965          113 ILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL  188 (452)
Q Consensus       113 ~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~  188 (452)
                      +++. ++++++|++.+++.|++.|++.|...+.... ++.|+   ++|++..+..    +    .+..+|..+++.+.+.
T Consensus        99 ~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~-~~~~~~~~~~rg~~~~~~----~----~~~~~g~~~~~~~~~~  169 (434)
T PRK11663         99 GIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAK-LLTAWYSRTERGGWWAIW----N----TAHNVGGALIPLVVGA  169 (434)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHH-HHHHhCCHHHHHHHHHHH----H----HHHHHHHHHHHHHHHH
Confidence            8876 6688999999999999999999988887755 77776   3344444322    2    2334555666666666


Q ss_pred             hhcccCCCcchhhHHHHHHHHHHHHHHHhccccccCCC---------CcchhH-H--H----HHHHhh-HHhhcchhHHH
Q 012965          189 LVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDP---------SESKDL-L--T----QFRGAA-VAIASDEKIAL  251 (452)
Q Consensus       189 l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~--~----~~~~~~-~~~~~~~~~~~  251 (452)
                      +.+.  ++||..|.+.+++.++..+......+|++++.         ++.++. .  +    +.++.. +..+++++++.
T Consensus       170 l~~~--~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (434)
T PRK11663        170 IALH--YGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWL  247 (434)
T ss_pred             HHHc--ccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHH
Confidence            6543  56778887776655443333332334322110         000000 0  0    011111 12456777777


Q ss_pred             HHHHHHhhhchhhhhhhhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCC--CCchhHHHHHHHHHHHH
Q 012965          252 LGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSP--PRVESYMQIVFVVSSVS  326 (452)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g--~~~~~~~~~~~~~~~~~  326 (452)
                      ......+...... ....|.|.|+++..+.+.   +...+...+++.+++++.|+++||+.  +|+. ............
T Consensus       248 ~~~~~~~~~~~~~-~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~-~~~~~~~~~~~~  325 (434)
T PRK11663        248 LSFSYVLVYVVRA-AINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGP-MNLIFAAGILLS  325 (434)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccH-HHHHHHHHHHHH
Confidence            6655444444333 357789999866566654   55666777889999999999999983  2331 111111111111


Q ss_pred             HHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhhh------hHHH
Q 012965          327 LLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPL------NIFV  400 (452)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~------~~~~  400 (452)
                      ..........         +.    .......+..+++.............|..|++.|+++.|+.+...      ++..
T Consensus       326 ~~~~~~~~~~---------~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~  392 (434)
T PRK11663        326 VGSLWLMPFA---------SY----VMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYP  392 (434)
T ss_pred             HHHHHHcccc---------cH----HHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhccc
Confidence            1111111111         00    111222222333222222334566789999999999999887642      2233


Q ss_pred             HHHHhccccCCchHHHHHHHHHHHH
Q 012965          401 CVVLYNVDAFPITVMFGMCSIFLLV  425 (452)
Q Consensus       401 ~~~l~~~~~~~~~~~~~~~~~~~~~  425 (452)
                      .+.+.+..+  +...+...+++.++
T Consensus       393 ~g~l~~~~g--~~~~f~~~~~~~~~  415 (434)
T PRK11663        393 LAKVLEIWH--WTGFFVVISIAAGI  415 (434)
T ss_pred             HHHHHHhcc--cHHHHHHHHHHHHH
Confidence            345555533  44444444444433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.96  E-value=1.2e-26  Score=221.29  Aligned_cols=331  Identities=15%  Similarity=0.157  Sum_probs=212.4

Q ss_pred             hhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHH
Q 012965           55 LQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRIL  133 (452)
Q Consensus        55 ~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l  133 (452)
                      ...+.+|++.+|+|.++++.|...+.......+++++.|+++||+|||+++..+.++.+++. ++++++|++.+++.|++
T Consensus        38 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  117 (394)
T PRK10213         38 LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRAC  117 (394)
T ss_pred             HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence            33667889999999999999998888888888899999999999999999999999999876 66889999999999999


Q ss_pred             HHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHH
Q 012965          134 GGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMV  213 (452)
Q Consensus       134 ~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~  213 (452)
                      +|++.+...+...+ ++.|+.+++++..... ...    .+..+|..+++.+++.+.+.  ++||..|.+.+++.++...
T Consensus       118 ~G~~~g~~~~~~~~-~i~~~~~~~~~~~a~~-~~~----~~~~~g~~ig~~l~~~l~~~--~gw~~~f~~~~~l~~~~~l  189 (394)
T PRK10213        118 LGLALGGFWAMSAS-LTMRLVPPRTVPKALS-VIF----GAVSIALVIAAPLGSFLGEL--IGWRNVFNAAAVMGVLCIF  189 (394)
T ss_pred             HHHhhHHHHHHHHH-HHHHHcCHhHHHHHHH-HHH----HHHHHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHH
Confidence            99999998888756 7777732222222111 122    23345556666666666643  5677788877766665544


Q ss_pred             HHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhc-cccccCCCCCch---HHHHHH
Q 012965          214 IILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWT-PALSPNDEEIPH---GFIFAT  289 (452)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~---~~~~~~  289 (452)
                      ......||+++++++.       .+...+.+|+|+++.......+.....+.. ..+. |.+.+ ..|.+.   +.....
T Consensus       190 ~~~~~~p~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~-~~g~s~~~~g~~~~~  260 (394)
T PRK10213        190 WIIKSLPSLPGEPSHQ-------KQNTFRLLQRPGVMAGMIAIFMSFAGQFAF-FTYIRPVYMN-LAGFGVDGLTLVLLS  260 (394)
T ss_pred             HHHHHCCCCCcccccc-------hhHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-hcCCChhHHHHHHHH
Confidence            4444456543222111       112235677788776654444444433332 3444 55554 334443   566777


Q ss_pred             HHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchh
Q 012965          290 FMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFW  369 (452)
Q Consensus       290 ~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  369 (452)
                      .+++.+++..+.+++.||.+++.   +.....+.......+......              .+......++.|++.+...
T Consensus       261 ~~~~~iig~~~~~~l~~r~~~~~---l~~~~~~~~~~~~~l~~~~~~--------------~~~~~~~~~l~G~~~~~~~  323 (394)
T PRK10213        261 FGIASFVGTSLSSFILKRSVKLA---LAGAPLVLAVSALVLTLWGSD--------------KIVATGVAIIWGLTFALVP  323 (394)
T ss_pred             HHHHHHHHHHHHHHHHhccchhH---HHHHHHHHHHHHHHHHHHhhh--------------HHHHHHHHHHHHHHHHhhh
Confidence            78889999999999999954332   333322222222222111111              0345567788888998888


Q ss_pred             hHHHHHHhhcCCcccccchhh----hhhh--hhhHHHHHHHhccccCCchHHHHHHHHH
Q 012965          370 PSIMKMRSQYIPEEARSTIMN----FFRI--PLNIFVCVVLYNVDAFPITVMFGMCSIF  422 (452)
Q Consensus       370 ~~~~~~~~~~~p~~~r~~~~g----~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~  422 (452)
                      +...+.+++..|++ +++..+    ..+.  ..+..+++.+.+..  +....+..+++.
T Consensus       324 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~--g~~~~~~~~~~~  379 (394)
T PRK10213        324 VGWSTWITRSLADQ-AEKAGSIQVAVIQLANTCGAAIGGYALDNI--GLTSPLMLSGTL  379 (394)
T ss_pred             HHHHHHHHHHCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ChhhHHHHHHHH
Confidence            88888899988854 333332    2222  25667777777763  344444444433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.96  E-value=1.5e-27  Score=230.10  Aligned_cols=338  Identities=17%  Similarity=0.098  Sum_probs=217.6

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHh-
Q 012965           42 YLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK-  119 (452)
Q Consensus        42 ~~~~~~~~~~~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~-  119 (452)
                      ++....+..++.++..+.+|...++++.++.+.|++.+...+...+++++.|+++||+|||+++..+..+.+++. ..+ 
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~  101 (417)
T PRK10489         22 VFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLAL  101 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHH
Confidence            334445666677777888888888999999999999999888888999999999999999999999887776653 222 


Q ss_pred             ----cCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCC
Q 012965          120 ----HSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSL  195 (452)
Q Consensus       120 ----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~  195 (452)
                          ..++++.+++.|++.|++.+...+...+ ++.|..+++++.... ....    .+..+|..+++.+++.+.+..+|
T Consensus       102 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~----~~~~~g~~~g~~l~g~l~~~~~~  175 (417)
T PRK10489        102 NAFLPEPSLLAIYLLGLWDGFFGSLGVTALLA-ATPALVGRENLMQAG-AITM----LTVRLGSVISPALGGLLIAAGGV  175 (417)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhh-hhhhccCHHHHHHHH-HHHH----HHHhHHHHhHHHHHHHHHHHHhh
Confidence                2678899999999999998887777655 666653222222211 1122    23445556666666666554455


Q ss_pred             CcchhhHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccc
Q 012965          196 GPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALS  275 (452)
Q Consensus       196 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  275 (452)
                      +  +.+...++..++..+... ..|+++++++++++..++.++..+..+++|.++.......+.. .... ...+.|.|.
T Consensus       176 ~--~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~p~~~  250 (417)
T PRK10489        176 A--WNYGLAAAGTFITLLPLL-RLPALPPPPQPREHPLRSLLAGFRFLLASPVVGGIALLGGLLT-MASA-VRVLYPALA  250 (417)
T ss_pred             H--HHHHHHHHHHHHHHHHHH-hCCCCCCCCcccccchHHHHHHHHHHHcChHHHHHHHHHHHHH-HHHh-HHHhhHHHH
Confidence            4  456555555444433333 4555433322222223344445566777777655443333222 2222 466788888


Q ss_pred             cCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchh
Q 012965          276 PNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGS  352 (452)
Q Consensus       276 ~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (452)
                      ++..+.+.   +...+...++.+++.++.+++.||.++++  .+..+..+..+.........+.               +
T Consensus       251 ~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~---------------~  313 (417)
T PRK10489        251 DEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGL--LMLLSTLGSFLAVGLFGLMPMW---------------I  313 (417)
T ss_pred             HhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcch--HHHHHHHHHHHHHHHHHccchH---------------H
Confidence            77566544   56677778889999999999999865554  2444444433333332211111               2


Q ss_pred             hHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh------hhHHHHHHHhcc
Q 012965          353 LQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNV  407 (452)
Q Consensus       353 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~  407 (452)
                      ...+..++.+++.+...+...++.+|..|++.|++++|+.+..      .+..+.+.+.+.
T Consensus       314 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~  374 (417)
T PRK10489        314 LAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM  374 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH
Confidence            4456667777777777778889999999999999999887653      344555666665

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.96  E-value=9.4e-27  Score=223.28  Aligned_cols=348  Identities=16%  Similarity=0.099  Sum_probs=210.2

Q ss_pred             HHHHHHHHHHhhhhhhhhHHH-HHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHh
Q 012965           42 YLLVYSLMMAGDWLQGPYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK  119 (452)
Q Consensus        42 ~~~~~~~~~~~~~~~~p~l~~-i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~  119 (452)
                      .....++..++.++..|++|. +.+++|.|+.+.|++.+...+...+.+++.|+++||+||||++..+.++.+++. .+.
T Consensus        20 l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~   99 (399)
T PRK05122         20 IVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYL   99 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHH
Confidence            344445555677777888886 568899999999999999999889999999999999999999999998887653 332


Q ss_pred             ---cCc-----cHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012965          120 ---HSP-----QYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL  188 (452)
Q Consensus       120 ---~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~  188 (452)
                         +.+     +++.+++.|+++|++.+...+.... ++.|.   ++|++..+..    +..    ...|..+++.+++.
T Consensus       100 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~----~~~----~~~g~~~g~~l~~~  170 (399)
T PRK05122        100 LAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSIL-WGIGRVGALHTGRVISWN----GIA----TYGALAIGAPLGVL  170 (399)
T ss_pred             HhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHH-HHHhhcChhhhccchhhh----hhh----hhHHHHHHHHHHHH
Confidence               222     5678899999999999998888755 55554   4555544432    222    33444555555555


Q ss_pred             hhcccCCCcchhhHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhh
Q 012965          189 LVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVF  268 (452)
Q Consensus       189 l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (452)
                      +.+.  ++|+..+.+..++.++..... ...|++++++++ +   ++.++..+..      +.......+.... +....
T Consensus       171 l~~~--~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~---~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~  236 (399)
T PRK05122        171 LYHW--GGLAGLGLLIMLLALLGLLLA-RPRPAVPPVKGE-R---LPFRRVLGRV------WPYGMGLALASIG-FGTIA  236 (399)
T ss_pred             HHHc--ccHHHHHHHHHHHHHHHHHHH-hcCCCCCCCCcc-c---hhHHHHHHHH------HHHHHHHHHHHHH-HHHHH
Confidence            5543  456666666555544333322 223332221111 1   1111111111      1111111111111 22234


Q ss_pred             hhccccccCCCCC-chHHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCc
Q 012965          269 LWTPALSPNDEEI-PHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGI  347 (452)
Q Consensus       269 ~~~p~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (452)
                      .+.|.+.++. +. +.+.......++.++++++.+++.||+++|+  .+..+..+..+.........+.           
T Consensus       237 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----------  302 (399)
T PRK05122        237 TFITLYYAAR-GWDGAALALTLFGVAFVGARLLFGNLINRLGGLR--VAIVSLLVEILGLLLLWLAPSP-----------  302 (399)
T ss_pred             HHHHHHHHHc-ccccchHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHhccH-----------
Confidence            4556555432 22 2355666777888999999999999999876  2434444434333333222111           


Q ss_pred             ccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhhh------hHHHHHHHhccccCCchHHHHHHHH
Q 012965          348 SFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPL------NIFVCVVLYNVDAFPITVMFGMCSI  421 (452)
Q Consensus       348 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~  421 (452)
                          +...+..++.|++.+..++.......|..|+++|+++.|+.+...      +..+.+.+.+.  .++...+...++
T Consensus       303 ----~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~--~g~~~~~~~~~~  376 (399)
T PRK05122        303 ----WMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW--FGYPSIFLAAAL  376 (399)
T ss_pred             ----HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCHHHHHHHHHH
Confidence                244566778888888888888888889999999999998877642      22333444444  345455555544


Q ss_pred             HHHHHHHHHHh
Q 012965          422 FLLVASVLQRR  432 (452)
Q Consensus       422 ~~~~~~~~~~~  432 (452)
                      +.+++......
T Consensus       377 ~~~~~~~~~~~  387 (399)
T PRK05122        377 AALLGLALTWL  387 (399)
T ss_pred             HHHHHHHHHHH
Confidence            44444443333

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.96  E-value=4.9e-27  Score=225.28  Aligned_cols=332  Identities=15%  Similarity=0.124  Sum_probs=212.6

Q ss_pred             hhhHHHHHHHHHHHHhhhhh----hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHH
Q 012965           37 SFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTY  112 (452)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~----~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~  112 (452)
                      |.+|+.....++....+.++    +...|.+.+|+|+|..++|++.+..++...+++++.|+++||+|||+++..+.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~   83 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW   83 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence            44566666666666666666    56667888999999999999999888888899999999999999999999999999


Q ss_pred             HHHH-HHhcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012965          113 ILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL  188 (452)
Q Consensus       113 ~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~  188 (452)
                      +++. ++++++|++.+++.|+++|++.+...+.... ++.|+   ++|++..+.    ++    .+..+|..+++.+++.
T Consensus        84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~-~~~~~~~~~~rg~~~~~----~~----~~~~~g~~~~~~~~~~  154 (412)
T TIGR02332        84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILL-YLTFWFPAYFRARANAL----FM----IAMPVTMALGLILSGY  154 (412)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHcCHHHHHHHHHH----HH----HHHHHHHHHHHHHHHH
Confidence            9876 6789999999999999999999999887755 77887   334554442    22    2334555555555555


Q ss_pred             hhcc----cCCCcchhhHHHHHHHHHHHHHHHhccccccCCCC---c-chhHH-HHH---------------------HH
Q 012965          189 LVDS----FSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPS---E-SKDLL-TQF---------------------RG  238 (452)
Q Consensus       189 l~~~----~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~-~~~---------------------~~  238 (452)
                      +.+.    ..++||..|.+.++..++...+.....||++++.+   + +++.. ++.                     ++
T Consensus       155 l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (412)
T TIGR02332       155 ILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRS  234 (412)
T ss_pred             HHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHH
Confidence            5432    23678888988777766555555445566543211   1 00000 000                     01


Q ss_pred             hhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccC-CCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchh
Q 012965          239 AAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPN-DEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVES  314 (452)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~  314 (452)
                      ..++++ ++.++.......+.....+. ...|.|.++++ +.+.+.   +.......++.+++.++.++++||+++|+. 
T Consensus       235 ~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~-  311 (412)
T TIGR02332       235 MLREIF-TPAIMLYTLAYFCLTNTLSA-INIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKH-  311 (412)
T ss_pred             HHHHhc-ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHH-
Confidence            112222 35555555444444444343 57899999976 234332   566677788899999999999999987762 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhh
Q 012965          315 YMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRI  394 (452)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~  394 (452)
                      ..........+..... . ... .         .   ........+.+++.....+..+....|.+|++.|++++|+.+.
T Consensus       312 ~~~~~~~~~~~~~~~~-~-~~~-~---------~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~  376 (412)
T TIGR02332       312 HTALPYLFAAAGWLLA-S-ATD-H---------N---LIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINA  376 (412)
T ss_pred             HHHHHHHHHHHHHHHH-H-hcC-C---------H---HHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHH
Confidence            1222222222222111 1 111 0         0   1112222233333333334455666788999999999998887


Q ss_pred             h
Q 012965          395 P  395 (452)
Q Consensus       395 ~  395 (452)
                      .
T Consensus       377 ~  377 (412)
T TIGR02332       377 T  377 (412)
T ss_pred             h
Confidence            5

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.96  E-value=2e-27  Score=237.82  Aligned_cols=178  Identities=18%  Similarity=0.188  Sum_probs=128.9

Q ss_pred             cchhhHHHHHHHHHHHHhhhhh----hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHH
Q 012965           35 FNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCL  110 (452)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~----~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~  110 (452)
                      ..+++|.++.++.+..+.++++    ++.+|.+.+++|++..+.+++.+..+++..++++++|+++||+|||++++++++
T Consensus       161 ~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~li  240 (742)
T TIGR01299       161 HGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLS  240 (742)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            4566777777777777766664    677888889999999999999888888888888999999999999999999999


Q ss_pred             HHHHHH-HHhcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhcc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012965          111 TYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHN---KRGFEQQWLSITFSKAIFLGNGLVAILSGLFG  186 (452)
Q Consensus       111 ~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~~---~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~  186 (452)
                      +.+++. +++++++++.++++|++.|++.+...+.... ++.|..   +|+...+......    .    +|.++++.++
T Consensus       241 l~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~-~isE~~p~~~Rg~~~g~~~~~~----~----iG~ila~~la  311 (742)
T TIGR01299       241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFS-YFAEFLAQEKRGEHLSWLCMFW----M----IGGIYAAAMA  311 (742)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHH----H----HHHHHHHHHH
Confidence            888875 6688999999999999999999999888755 888873   3444444333322    2    3333333333


Q ss_pred             hhhhcccC-----------CCcchhhHHHHHHHHHHHHHHHhccccc
Q 012965          187 NLLVDSFS-----------LGPVAPFDAAACFLAIGMVIILSSWTEN  222 (452)
Q Consensus       187 ~~l~~~~~-----------~~~~~~f~~~~~~~~~~~~~~~~~~~~~  222 (452)
                      ..+....+           ++||+.+++.++..++..+. .+..||.
T Consensus       312 ~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~-~~~lPES  357 (742)
T TIGR01299       312 WAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGA-LTFMPES  357 (742)
T ss_pred             HHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHH-HHHcCCC
Confidence            33322222           35788777766655544333 3356664

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.96  E-value=2.9e-27  Score=227.43  Aligned_cols=348  Identities=14%  Similarity=0.094  Sum_probs=217.7

Q ss_pred             cchhhHHHHHHHHHHHHhhhhh----hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHH
Q 012965           35 FNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCL  110 (452)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~----~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~  110 (452)
                      .++.+|+.+..+.+....+.++    .+..|.+.+++|.|+.+.|++.+...+...+++++.|+++||+|||+++..+.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   85 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV   85 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            3445666666666666666555    778888999999999999999999998888999999999999999999999999


Q ss_pred             HHHHHH-HHhcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012965          111 TYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG  186 (452)
Q Consensus       111 ~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~  186 (452)
                      +.+++. +++++++++.+++.|++.|++.+...+...+ ++.|.   ++|++..+..    .    .+..+|..+++.++
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~----~----~~~~~g~~~~~~l~  156 (405)
T TIGR00891        86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAA-YVIESWPKHLRNKASGLL----I----SGYAVGAVVAAQVY  156 (405)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHH-HHHHhCChhhhhHHHHHH----H----HHHHHHHHHHHHHH
Confidence            988876 6688999999999999999999999888766 77776   3444444322    2    23345555555555


Q ss_pred             hhhhcccCCCcchhhHHHHHHHHHHHHHHHhccccccCCCCcch---hHHHHHHH---h---hHH--------h----hc
Q 012965          187 NLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESK---DLLTQFRG---A---AVA--------I----AS  245 (452)
Q Consensus       187 ~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~---~~~--------~----~~  245 (452)
                      +.+.+..+.+||..|.+.++..++..+ .....||+++.+++++   +..+..++   .   .+.        .    .+
T Consensus       157 ~~l~~~~~~~w~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (405)
T TIGR00891       157 SLVVPVWGDGWRALFFISILPIIFALW-LRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGK  235 (405)
T ss_pred             HHHHHhcCccHHHHHHHHHHHHHHHHH-HHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhh
Confidence            555544444578888776555444433 3335566432111100   00000000   0   000        0    00


Q ss_pred             chh-HHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHH
Q 012965          246 DEK-IALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFV  321 (452)
Q Consensus       246 ~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~  321 (452)
                      ++. +........+...... ....+.|.+..+..+.+.   +.......++.+++.++.+++.||++||+.  +..+..
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~--~~~~~~  312 (405)
T TIGR00891       236 RWPTFVYLVVLVLFANLYSH-PIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKA--YVCSLL  312 (405)
T ss_pred             hhHHHHHHHHHHHHHHHHHh-hhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhh--hHHHHH
Confidence            011 1111112222222222 245677877765555544   566677788899999999999999998873  333333


Q ss_pred             HHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh------
Q 012965          322 VSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------  395 (452)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------  395 (452)
                      ...............              .+...+...+.++..+...+....+.+|.+|+++|++++|+.+..      
T Consensus       313 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~  378 (405)
T TIGR00891       313 AGQLLIIPVFAIGAN--------------VAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGA  378 (405)
T ss_pred             HHHHHHHHHHHhCCc--------------hHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHH
Confidence            222222211111111              023334445555666666777888999999999999999887653      


Q ss_pred             hhHHHHHHHhcccc
Q 012965          396 LNIFVCVVLYNVDA  409 (452)
Q Consensus       396 ~~~~~~~~l~~~~~  409 (452)
                      .++.+++.+.+..+
T Consensus       379 ~g~~~~g~l~~~~g  392 (405)
T TIGR00891       379 LAPIIGALLAQRLD  392 (405)
T ss_pred             HHHHHHHHHHHhcc
Confidence            33355556666544

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.96  E-value=1.2e-27  Score=227.79  Aligned_cols=338  Identities=14%  Similarity=0.052  Sum_probs=215.7

Q ss_pred             hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHH
Q 012965           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G  135 (452)
                      .++.|.+.+|+|+|.+++|++.+...+...+++++.|+++||+|||+++..+.++.+++. ++++++|++.+++.|++.|
T Consensus        23 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  102 (377)
T TIGR00890        23 TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLAS  102 (377)
T ss_pred             hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            788899999999999999999999999888999999999999999999999999998876 6789999999999999999


Q ss_pred             hHhhhhhhhhhhhhhhhc--ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHH
Q 012965          136 IATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMV  213 (452)
Q Consensus       136 ~~~~~~~~~~~~~~i~e~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~  213 (452)
                      ++.+...+.... .+.|+  ++|++..+.        ...+..+|..+++.+.+.+.+  .++||..|.+.+++.++...
T Consensus       103 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~~g~~~~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~  171 (377)
T TIGR00890       103 AGVGIAYGIALN-TAVKWFPDKRGLASGI--------IIGGYGLGSFILSPLITSVIN--LEGVPAAFIYMGIIFLLVIV  171 (377)
T ss_pred             HHHHHHHHhHHH-HHHHHcCcccHHHHHH--------HHHhcchhHhHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHH
Confidence            999988777655 56664  444443332        223344555444444444443  34677888887776665544


Q ss_pred             HHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HHHHHHH
Q 012965          214 IILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATF  290 (452)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~  290 (452)
                      ......++++++++++++..++.++..++..++++.+............... ...+.+.+.++ .+.+.   +......
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~  249 (377)
T TIGR00890       172 LGAFLIGYPPGQLIKTNIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLL-LIGLYKPYGQS-LGLSDGFLVLAVSIS  249 (377)
T ss_pred             HHHHheecCchhccccCcccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHH-HHHHHHHHHHH-cCCCHHHHHHHHHHH
Confidence            4433333222111111111111122344667777777655444433333222 23344445433 33333   5666777


Q ss_pred             HHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhh
Q 012965          291 MLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWP  370 (452)
Q Consensus       291 ~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  370 (452)
                      .++.++++++.+++.||++||+.  +..+.....+...........           .  .........+.+++.+...+
T Consensus       250 ~~~~~~~~~~~g~l~dr~g~~~~--~~~~~~~~~~~~~~~~~~~~~-----------~--~~~~~~~~~~~g~~~g~~~~  314 (377)
T TIGR00890       250 SIFNGGGRPFLGALSDKIGRQKT--MSIVFGISAVGMAAMLFIPML-----------N--DVLFLATVALVFFTWGGTIS  314 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHcccc-----------h--hHHHHHHHHHHHHHhccchh
Confidence            88899999999999999998873  444444444433332221111           0  01233445566777777777


Q ss_pred             HHHHHHhhcCCcccccchhhhhhhhh------hHHHHHHHhccccCCchHHHHHHHHHHH
Q 012965          371 SIMKMRSQYIPEEARSTIMNFFRIPL------NIFVCVVLYNVDAFPITVMFGMCSIFLL  424 (452)
Q Consensus       371 ~~~~~~~~~~p~~~r~~~~g~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~  424 (452)
                      ....+..|.+|+++|+++.|+.+...      +..+.+.+.+..  ++...+..++++.+
T Consensus       315 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~--g~~~~f~~~~~~~~  372 (377)
T TIGR00890       315 LFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI--GFEYTFIVTGAFAL  372 (377)
T ss_pred             ccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh--chhhHHHHHHHHHH
Confidence            77889999999999999999887642      223334444443  34444444444433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.96  E-value=2.3e-26  Score=221.42  Aligned_cols=356  Identities=18%  Similarity=0.147  Sum_probs=217.6

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHhhcCCCcch-----hHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH
Q 012965           42 YLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGE-----IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC  116 (452)
Q Consensus        42 ~~~~~~~~~~~~~~~~p~l~~i~~~~g~s~~~-----~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~  116 (452)
                      .....++...+.....|++|.+.+++|.+..+     .|.+.+...+...+.+++.|+++||+|||+++..+..+.+++.
T Consensus        19 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   98 (408)
T PRK09874         19 AWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVM   98 (408)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHH
Confidence            33444445556666689999999999998765     3777888888888999999999999999999999988888875


Q ss_pred             -HHhcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 012965          117 -ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS  192 (452)
Q Consensus       117 -l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~  192 (452)
                       ++.+.++++.+++.|++.|++.+. .+.... ++.|.   ++|++..+.    ..    .+..+|..+++.+++.+.+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~----~~----~~~~~g~~~~~~~~~~l~~~  168 (408)
T PRK09874         99 VLMGLAQNIWQFLILRALLGLLGGF-VPNANA-LIATQVPRNKSGWALGT----LS----TGGVSGALLGPLAGGLLADS  168 (408)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhhhh-HHhHHH-HHHHhcCHhhhhHHHHH----HH----HHHHHHHHHHHHHHHHHHHH
Confidence             567889999999999999998654 455544 55554   334443332    22    23345555556666665543


Q ss_pred             cCCCcchhhHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhcc
Q 012965          193 FSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTP  272 (452)
Q Consensus       193 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  272 (452)
                        ++|+..|.+.+++.++..+......||++++++++++  .+. ++..+..++++.+.......+...........+.|
T Consensus       169 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (408)
T PRK09874        169 --YGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEM--LHM-REVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILT  243 (408)
T ss_pred             --hCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhh--hHH-HHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence              4567778777766655554444344543322111111  111 12223456666554322222221111222344455


Q ss_pred             ccccCCCCC-c-----hHHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCC
Q 012965          273 ALSPNDEEI-P-----HGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGG  346 (452)
Q Consensus       273 ~~~~~~~~~-~-----~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (452)
                      .|..+..+. +     .+.......++.+++.+..+++.||++||+.  +..+.....+...........          
T Consensus       244 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~--~~~~~~~~~~~~~~~~~~~~~----------  311 (408)
T PRK09874        244 LYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKI--LITALIFSVLLLIPMSFVQTP----------  311 (408)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHHHhccH----------
Confidence            555432221 1     1334455567788888999999999998873  333333333323222211111          


Q ss_pred             cccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh------hhHHHHHHHhccccCCchHHHHHHH
Q 012965          347 ISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNVDAFPITVMFGMCS  420 (452)
Q Consensus       347 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~  420 (452)
                           +...+...+.|++.+...|...+...+..|+++|++.++..+..      .++.+++.+.+..  ++...+...+
T Consensus       312 -----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~--g~~~~f~~~~  384 (408)
T PRK09874        312 -----LQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY--GFRAVFLVTA  384 (408)
T ss_pred             -----HHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc--chhHHHHHHH
Confidence                 34556667788888888898999999999999999998876553      3445556665553  4555555555


Q ss_pred             HHHHHHHHHHH
Q 012965          421 IFLLVASVLQR  431 (452)
Q Consensus       421 ~~~~~~~~~~~  431 (452)
                      ++.++..+...
T Consensus       385 ~~~l~~~~~~~  395 (408)
T PRK09874        385 GVVLFNAVYSW  395 (408)
T ss_pred             HHHHHHHHHHH
Confidence            55544444433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.96  E-value=1.9e-26  Score=221.54  Aligned_cols=317  Identities=15%  Similarity=0.191  Sum_probs=207.8

Q ss_pred             hhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHH
Q 012965           56 QGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILG  134 (452)
Q Consensus        56 ~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~  134 (452)
                      ..|.+|.+.+|+|.|+.+.++..+...+...+..++.|+++||+||||++..+..+.+++. ++.++++++.+++.|+++
T Consensus        32 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  111 (406)
T PRK15402         32 IQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQ  111 (406)
T ss_pred             HhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            3778888999999999999988888888788888999999999999999999998888876 668889999999999999


Q ss_pred             HhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHH
Q 012965          135 GIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVI  214 (452)
Q Consensus       135 G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~  214 (452)
                      |++.+...+...+ .+.|..++..+...... ..    .+..++..++|.+++.+.++.  +||..|++.++..++....
T Consensus       112 G~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~-~~----~~~~~~~~~g~~i~~~l~~~~--~w~~~~~~~~~~~~~~~~~  183 (406)
T PRK15402        112 GIGLCFIGAVGYA-AIQESFEEADAIKITAL-MA----NVALLAPLLGPLVGAALIHVL--PWRGMFVLFAALAALSFFG  183 (406)
T ss_pred             HhHhhhHHHHHHH-HHHHHhChhHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHcc--CccHHHHHHHHHHHHHHHH
Confidence            9999887776655 66665222222221111 11    123345566666666666544  5667777766666655554


Q ss_pred             HHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HHHHHHHH
Q 012965          215 ILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFM  291 (452)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~  291 (452)
                      .....||++++++++. ..++..++.++.+++|+++.......+....... ...+.|.+.++..+.++   +.......
T Consensus       184 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~g~~~~~~g~~~~~~~  261 (406)
T PRK15402        184 LWRAMPETAGRVGEKL-SLKELGRDYKLVLKNRRFVAGALALGLVSLPLLA-WIALSPVILISGEQLSSYEYGLLQVPVF  261 (406)
T ss_pred             HHHhCCCCCccccccc-cHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHhCCCHHHHHHHHHHHH
Confidence            4445666543322211 1233445566788888888776655544433332 34556777665555544   44445555


Q ss_pred             HHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhH
Q 012965          292 LASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPS  371 (452)
Q Consensus       292 i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  371 (452)
                      ++..++.++.+++.||+++|+  .+..+.....++............      .+    .+.......+.+++.+...+.
T Consensus       262 ~~~~~g~~~~g~l~~r~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~------~~----~~~~~~~~~~~g~g~~~~~~~  329 (406)
T PRK15402        262 GALIAGNLTLARLTSRRPLRS--LIRMGLWPMVAGLLLAALATVISS------HA----YLWLTAGLSLYAFGIGLANAG  329 (406)
T ss_pred             HHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHHHHHHHHHHHHccc------cc----HHHHHHHHHHHHHHHHHHhhh
Confidence            678889999999999998876  244444443333333332221100      00    123456677788888877776


Q ss_pred             HHHHHhhcCCcccccchhhhhhhh
Q 012965          372 IMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       372 ~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      .+...... ++++|++..+..++.
T Consensus       330 ~~~~~~~~-~~~~~g~~~~~~~~~  352 (406)
T PRK15402        330 LYRLTLFS-SDVSKGTVSAAMGML  352 (406)
T ss_pred             HHHHHhhh-ccccccHHHHHHHHH
Confidence            66655444 447789888877664

>PRK10133 L-fucose transporter; Provisional

Probab=99.96  E-value=2e-26  Score=222.16  Aligned_cols=315  Identities=12%  Similarity=0.141  Sum_probs=202.6

Q ss_pred             hhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HH---hcCccHHHH
Q 012965           52 GDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT---KHSPQYKIL  127 (452)
Q Consensus        52 ~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~---~~~~~~~~l  127 (452)
                      ......+.+|.+.+++|+|+.+.|+..+...+...+.+++.|+++||+||||++..+..+++++. ++   ..+++++.+
T Consensus        41 ~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~l  120 (438)
T PRK10133         41 ANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLF  120 (438)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            44444888899999999999999999888888888999999999999999999999999999976 43   568999999


Q ss_pred             HHHHHHHHhHhhhhhhhhhhhhhhhcccc---cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------------hc
Q 012965          128 MIGRILGGIATSLLFSAFESWLVAEHNKR---GFEQQWLSITFSKAIFLGNGLVAILSGLFGNLL-------------VD  191 (452)
Q Consensus       128 ~~~r~l~G~~~~~~~~~~~~~~i~e~~~r---~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l-------------~~  191 (452)
                      +++|+++|++.+...+...+ ++.|..++   ++..+..    +....+|..+|+.+++.+....             .+
T Consensus       121 l~~r~l~G~g~g~~~~~~~~-~v~~~~~~~~~~~~~s~~----~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~  195 (438)
T PRK10133        121 LVGLFIIAAGLGCLETAANP-FVTVLGPESSGHFRLNLA----QTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPE  195 (438)
T ss_pred             HHHHHHHHHHHHHHHhhHHH-HHHHhCChhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChh
Confidence            99999999999999888866 66665222   2223333    3333344444444443322100             00


Q ss_pred             -ccCC------CcchhhHHHH-HHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchh
Q 012965          192 -SFSL------GPVAPFDAAA-CFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSM  263 (452)
Q Consensus       192 -~~~~------~~~~~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (452)
                       ..+|      +||.+|.... +..++..+......||.++++++ ++..++..+..++++++|+++...+...+.....
T Consensus       196 ~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~  274 (438)
T PRK10133        196 QLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHS-DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQ  274 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc-cccccchhhhHHHHHhCchHHHHHHHHHHHHHHH
Confidence             0123      5666775433 33333333333344543221111 1111122234456778888776554444444443


Q ss_pred             hhhhhhhccccc-cCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCC
Q 012965          264 YTFVFLWTPALS-PNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAP  339 (452)
Q Consensus       264 ~~~~~~~~p~~~-~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (452)
                      +. ...|.+.|+ ++..+.++   +..+....++.++++++.+++.||+++|+.  +..+..+....+....... .   
T Consensus       275 ~~-~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~--l~~~~~~~~~~~~~~~~~~-~---  347 (438)
T PRK10133        275 TA-CWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV--LAAYALIAMALCLISAFAG-G---  347 (438)
T ss_pred             HH-HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH--HHHHHHHHHHHHHHHHHcC-C---
Confidence            33 355677764 55566655   567788889999999999999999998872  4444333333332222111 1   


Q ss_pred             CCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhh
Q 012965          340 SNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFF  392 (452)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~  392 (452)
                                  ......+.+.+++.+..+|..++...|..|++ .+++.++.
T Consensus       348 ------------~~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~  387 (438)
T PRK10133        348 ------------HVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFI  387 (438)
T ss_pred             ------------hHHHHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHH
Confidence                        12355677889999999999999999998875 44444443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.96  E-value=9.9e-27  Score=220.42  Aligned_cols=327  Identities=15%  Similarity=0.106  Sum_probs=223.4

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhc
Q 012965           42 YLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH  120 (452)
Q Consensus        42 ~~~~~~~~~~~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~  120 (452)
                      ++...++..+++....+.+|...+|++.++.++|++.+...+...+.+++.|+++||+||||++..+..+.+++. +..+
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~   83 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF   83 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence            344455566667777788888888999999999999999988888999999999999999999999988887754 4455


Q ss_pred             Cc-----cHHHHHHHHHHHHhHhhhhhhhhhhhhhhhcc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 012965          121 SP-----QYKILMIGRILGGIATSLLFSAFESWLVAEHN---KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS  192 (452)
Q Consensus       121 ~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~~---~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~  192 (452)
                      .+     +++.+++.|++.|++.+...+...+ ++.|..   +|++..+.    .+.    +..+|..+++.+++.+.+.
T Consensus        84 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~----~~~~g~~~g~~l~~~l~~~  154 (365)
T TIGR00900        84 VALLGGLNIWQVYVLAGILAIAQAFFTPAYQA-MLPDLVPEEQLTQANSL----SQA----VRSLFYIVGPGIGGLMYAT  154 (365)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCHHHHHHHHhH----HHH----HHHHHHHHHHHHHHHHHHH
Confidence            55     9999999999999999999888866 777773   33443332    222    3345555555666665543


Q ss_pred             cCCCcchhhHHHHHHHHHHHHHHHh-ccccccCCCCcc-h-hHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhh
Q 012965          193 FSLGPVAPFDAAACFLAIGMVIILS-SWTENYGDPSES-K-DLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFL  269 (452)
Q Consensus       193 ~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (452)
                        ++|+..|...++..++....... ..||++++++++ + +..++.++..++.+|+|+++.......+...........
T Consensus       155 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (365)
T TIGR00900       155 --LGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVA  232 (365)
T ss_pred             --hhHHHHHHHHHHHHHHHHHHHHhcccccCCCccccccchhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence              35667777766555544333332 233332212111 1 222334455667788888877666555555444433336


Q ss_pred             hccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCC
Q 012965          270 WTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGG  346 (452)
Q Consensus       270 ~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (452)
                      +.|.+.++..+.+.   +.......++.+++.++.+++.||.+||+.  +..+....++...........          
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----------  300 (365)
T TIGR00900       233 LFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMAL--MTGAIFVIGLAILVVGLTPPN----------  300 (365)
T ss_pred             HhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHH--HHHHHHHHHHHHHHHHhhchh----------
Confidence            77887776445443   666777788899999999999999988762  333333333333332222110          


Q ss_pred             cccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          347 ISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       347 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                          .+...+..++.+++.+...+...++..|..|+++|+++.|+.+..
T Consensus       301 ----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (365)
T TIGR00900       301 ----FPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSL  345 (365)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence                135567778889999988899999999999999999999987764

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.96  E-value=1.5e-26  Score=223.89  Aligned_cols=343  Identities=16%  Similarity=0.124  Sum_probs=211.2

Q ss_pred             hhhHHHHHHHHHHHHhhhhh----hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHH
Q 012965           37 SFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTY  112 (452)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~----~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~  112 (452)
                      +.+++.+..+.+....++++    .+..|.+.+++|+|+.+.+.+.+...+...+++++.|+++||+|||+++..+.++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~   93 (426)
T PRK12307         14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY   93 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            45555555555665555555    77778888999999999999888888888888999999999999999999999999


Q ss_pred             HHHH-HHhcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012965          113 ILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL  188 (452)
Q Consensus       113 ~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~  188 (452)
                      +++. +++++++++.++++|+++|++.+...+.... ++.|.   ++|++..+.        ...+..+|..+++.+...
T Consensus        94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~-~~~~~~~~~~r~~~~~~--------~~~~~~lg~~~~~~l~~~  164 (426)
T PRK12307         94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACAST-YAVESWPKHLKSKASAF--------LVSGFGIGNIIAAYFMPS  164 (426)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHhCCHhHhhHhhhH--------HHHHHhHHHHHHHHHHHH
Confidence            9976 6688999999999999999999988888756 77776   334443332        223445566666666665


Q ss_pred             hhcccCCCcchhhHHHHHHHHHHHHHHHhccccccCCCC-----cc---hhHHHHHHHhhHHhhcchhHHHHHHHHH--h
Q 012965          189 LVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPS-----ES---KDLLTQFRGAAVAIASDEKIALLGAIQS--L  258 (452)
Q Consensus       189 l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  258 (452)
                      +.+.  ++||..|.+.....++.. ......||+++.++     +.   ++..+..+...++.+++++++.......  +
T Consensus       165 l~~~--~~w~~~f~i~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (426)
T PRK12307        165 FAEA--YGWRAAFFVGLLPVLLVI-YIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLF  241 (426)
T ss_pred             Hccc--CCHHHHHHHHHHHHHHHH-HHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHH
Confidence            5543  466777776543333322 22223344321100     00   0000111123456677766654322211  1


Q ss_pred             hhchhhhhhhhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 012965          259 FEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSF  335 (452)
Q Consensus       259 ~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (452)
                      ...........+.|.+.++. +.+.   +.......++.++++++.+++.||++||+.  ...+.....+..........
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~--~~~~~~~~~~~~~~~~~~~~  318 (426)
T PRK12307        242 SIFGANWPIFGLLPTYLAGE-GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKT--FSIGLLMSFLFIFPLFRIPQ  318 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH--HHHHHHHHHHHHHHHHHHcc
Confidence            11111112356778777643 4433   555667778899999999999999998872  33333333332222211111


Q ss_pred             hcCCCCcCCCCcccchhhHHHHHHHHHHHh--hchhhHHHHHHhhcCCcccccchhhhhhhh------hhHHHHHHHhcc
Q 012965          336 LVAPSNVKSGGISFSGSLQLLGFCTFEACV--GIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNV  407 (452)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~  407 (452)
                      .               .......++++.+.  ....+..+.++.|.+|++.|++++|+.+..      .++.+.+++.+.
T Consensus       319 ~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~  383 (426)
T PRK12307        319 D---------------NYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGIT  383 (426)
T ss_pred             c---------------cHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHc
Confidence            1               01122223333322  223456677889999999999999876653      333455555555


Q ss_pred             cc
Q 012965          408 DA  409 (452)
Q Consensus       408 ~~  409 (452)
                      .+
T Consensus       384 ~g  385 (426)
T PRK12307        384 MG  385 (426)
T ss_pred             cc
Confidence            43

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.96  E-value=2.8e-26  Score=218.43  Aligned_cols=327  Identities=14%  Similarity=0.146  Sum_probs=210.7

Q ss_pred             hhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHH
Q 012965           52 GDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIG  130 (452)
Q Consensus        52 ~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~  130 (452)
                      +..+..|.+|.+.+++|+|+.+.+.+.+...+...+++++.|+++||+|||+++..+.++.+++. ++.++++++.+++.
T Consensus         6 ~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   85 (377)
T PRK11102          6 AIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYM   85 (377)
T ss_pred             HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence            33444788999999999999999999888888888889999999999999999999999998876 66888999999999


Q ss_pred             HHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHH
Q 012965          131 RILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACF  207 (452)
Q Consensus       131 r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~  207 (452)
                      |++.|++.+...+...+ ++.|.   ++|++..+.    ..    .+..+|..+++.+++.+.+.  ++|+..|.+.+.+
T Consensus        86 ~~l~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~----~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~~~~~  154 (377)
T PRK11102         86 RFLHGLAAAAASVVINA-LMRDMFPKEEFSRMMSF----VT----LVMTIAPLLAPIIGGWLLVW--FSWHAIFWVLALA  154 (377)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHhcCHHHHHHHHHH----HH----HHHHHHHHHHHHHHHHHHHH--cChHHHHHHHHHH
Confidence            99999999988887756 77776   334443332    22    23345555666666666543  4667788777766


Q ss_pred             HHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---H
Q 012965          208 LAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---G  284 (452)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~  284 (452)
                      .++.........||+++++++++...++..++.++.+++++.+.......+.....+. ...+.|.+..+..+.++   +
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g  233 (377)
T PRK11102        155 AILAAALVFFFIPETLPKERRQPFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFS-FLTAGPFVYIELNGVSPQNFG  233 (377)
T ss_pred             HHHHHHHHHHhCCccCcccccCCCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH-HHHcCHHHHHHHhCCCHHHHH
Confidence            6665555444556644332222212222234455677888877665554444444333 35566666655455443   5


Q ss_pred             HHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHH
Q 012965          285 FIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEAC  364 (452)
Q Consensus       285 ~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  364 (452)
                      .......++.+++.++.+++.||+|+|+.  +..+..+..+.............       +    .+...+...+...+
T Consensus       234 ~~~~~~~~~~~~~~~~~g~l~~r~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~~~~~~  300 (377)
T PRK11102        234 YYFALNIVFLFVMTIINSRFVRRVGALNM--LRFGLWIQFIMGIWLVVSALLDL-------G----FWALVVGVAAFVGC  300 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHHHHHHHHHHHHHHHHHHhh-------h----HHHHHHHHHHHHHH
Confidence            67777788899999999999999998873  33333322222111111111100       0    02233344444445


Q ss_pred             hhchhhHHHHHHhhcCCcccccchhhhhhhh---hhHHHHHHH
Q 012965          365 VGIFWPSIMKMRSQYIPEEARSTIMNFFRIP---LNIFVCVVL  404 (452)
Q Consensus       365 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~---~~~~~~~~l  404 (452)
                      .+...+.......|..| +.++++.++.+..   .+..++...
T Consensus       301 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~  342 (377)
T PRK11102        301 VSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL  342 (377)
T ss_pred             HHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence            55555556667788776 6788888776543   334444444

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.96  E-value=6.4e-26  Score=215.89  Aligned_cols=334  Identities=13%  Similarity=0.094  Sum_probs=208.1

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhc
Q 012965           42 YLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH  120 (452)
Q Consensus        42 ~~~~~~~~~~~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~  120 (452)
                      +....+..........|.+|.+.+|+|.|.++.|++.+...+...+++++.|+++||+|||+++..+..+.+++. ++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~   87 (382)
T PRK10091          8 LALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTL   87 (382)
T ss_pred             HHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHH
Confidence            333334444455555888899999999999999999888888888999999999999999999999999999876 6789


Q ss_pred             CccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchh
Q 012965          121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAP  200 (452)
Q Consensus       121 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~  200 (452)
                      ++|++.+++.|++.|++.+...+.... ++.|..+++++....+     ....+..+|..+++.+++.+.+.  ++||+.
T Consensus        88 ~~~~~~l~~~r~l~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~g~~l~~~l~~~--~gwr~~  159 (382)
T PRK10091         88 SSSYLMLAIGRLVSGFPHGAFFGVGAI-VLSKIIKPGKVTAAVA-----GMVSGMTVANLLGIPLGTYLSQE--FSWRYT  159 (382)
T ss_pred             hCcHHHHHHHHHHHHhhhHHHHHHHHH-HHHHhCChHHhhHHHH-----HHHHHHHHHHHHhccHHHHHhhh--ccHHHH
Confidence            999999999999999999988776644 6666633333222111     12234556666666777766643  567788


Q ss_pred             hHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCC
Q 012965          201 FDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEE  280 (452)
Q Consensus       201 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  280 (452)
                      |.+.+++.++.........||.++++++  +.    ++.. +..++++.+.......+.....+. ...+.+.+.++..|
T Consensus       160 f~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g  231 (382)
T PRK10091        160 FLLIAVFNIAVLASIYFWVPDIRDEAKG--GL----REQF-HFLRSPAPWLIFAATMFGNAGVFA-WFSYIKPYMMFISG  231 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCccccc--CH----HHHH-HHhcChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcC
Confidence            8887776665554444456664322211  11    1112 235666666554433333333222 23445555555455


Q ss_pred             Cch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHH
Q 012965          281 IPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLG  357 (452)
Q Consensus       281 ~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (452)
                      .++   +.......++.++++++.+++.||+++|+.  +.....+..+..+........           .   +...+.
T Consensus       232 ~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~--~~~~~~~~~i~~~~~~~~~~~-----------~---~~~~~~  295 (382)
T PRK10091        232 FSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRI--AAVTDFIIVLALLMLFFFGGM-----------K---TASLIF  295 (382)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhH--HHHHHHHHHHHHHHHHHHHhh-----------H---HHHHHH
Confidence            543   566777888999999999999999998873  444444444433332221111           0   123334


Q ss_pred             HHHHHHHhhchhhH-HHHHHhhcCCcccccchhhh--hhh--hhhHHHHHHHhcc
Q 012965          358 FCTFEACVGIFWPS-IMKMRSQYIPEEARSTIMNF--FRI--PLNIFVCVVLYNV  407 (452)
Q Consensus       358 ~~~~g~~~~~~~~~-~~~~~~~~~p~~~r~~~~g~--~~~--~~~~~~~~~l~~~  407 (452)
                      .++.+.+.....+. ......+..|++.++.+.+.  .+.  ..++.+++.+.+.
T Consensus       296 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Gp~~~G~l~~~  350 (382)
T PRK10091        296 AFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAIGAYCGGMMLTL  350 (382)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHhHHHHHc
Confidence            44445554433433 33445555566666654321  111  2455666666664

>PRK12382 putative transporter; Provisional

Probab=99.96  E-value=1.1e-25  Score=215.30  Aligned_cols=348  Identities=16%  Similarity=0.143  Sum_probs=210.2

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhHHH-HHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-
Q 012965           39 KNNYLLVYSLMMAGDWLQGPYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-  116 (452)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~p~l~~-i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-  116 (452)
                      .+......++..+..++..|.+|. +.+|+|.|+.++|.+.+...+...+.+++.|+++||+||||++..+.+...++. 
T Consensus        17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~   96 (392)
T PRK12382         17 LFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGL   96 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHH
Confidence            333444444555566666888875 468999999999999999999899999999999999999999999888776542 


Q ss_pred             ---HHhc-----CccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012965          117 ---ITKH-----SPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLF  185 (452)
Q Consensus       117 ---l~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l  185 (452)
                         +++.     .++++.+++.|+++|++.+...+...+ ++.|.   ++|++..+..    +.+    ...|..+++.+
T Consensus        97 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~-~~~~~~~~~~r~~a~~~~----~~~----~~~g~~~g~~~  167 (392)
T PRK12382         97 AYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALT-WGLGLVGPKHSGKVMSWN----GMA----MYGALAAGAPL  167 (392)
T ss_pred             HHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCCccccchhhhHH----HHH----HHHHHHHHHHH
Confidence               1222     357889999999999999988777655 55554   5566655532    222    33444555556


Q ss_pred             hhhhhcccCCCcchhhHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhh
Q 012965          186 GNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYT  265 (452)
Q Consensus       186 ~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (452)
                      ++.+.+.  ++|+..+.+..+..++..... +..||+++++++ ++   +.++..+..++ +...     ..+.... +.
T Consensus       168 ~~~l~~~--~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~---~~~~~~~~~~~-~~~~-----~~l~~~~-~~  233 (392)
T PRK12382        168 GLLLHSH--FGFAALALTTMVLPLLAWAFN-GTVRKVPAHAGE-RP---SLWSVVGLIWK-PGLG-----LALQGVG-FA  233 (392)
T ss_pred             HHHHHhc--cChHHHHHHHHHHHHHHHHHH-HhccCCCCCccc-Cc---hHHHHHHHHHH-hHHH-----HHHHHHH-Hh
Confidence            5555543  456665555444433332222 233433222111 11   11111122111 1111     1111111 22


Q ss_pred             hhhhhccccccCCCCCc-hHHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCC
Q 012965          266 FVFLWTPALSPNDEEIP-HGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKS  344 (452)
Q Consensus       266 ~~~~~~p~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (452)
                      ....+.|.+.++. +.+ .+.......++.++++++.+++.||+|+|+.  +..+..+..+...........        
T Consensus       234 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~--~~~~~~~~~~~~~~~~~~~~~--------  302 (392)
T PRK12382        234 VIGTFVSLYFASK-GWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKV--AIVSLLVETVGLLLLWLAPTA--------  302 (392)
T ss_pred             HHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCee--hHHHHHHHHHHHHHHHHcccH--------
Confidence            2345556665542 332 3555566677788999999999999998873  444444444443332221111        


Q ss_pred             CCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh------hhHHHHHHHhccccCCchHHHHH
Q 012965          345 GGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNVDAFPITVMFGM  418 (452)
Q Consensus       345 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~~~~~~~~  418 (452)
                             +.......+.+++.+...+...+...|..|+++|+++.|+.+..      .+..+.+.+.+..+  +...+..
T Consensus       303 -------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g--~~~~~~~  373 (392)
T PRK12382        303 -------WVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG--YPSVFLA  373 (392)
T ss_pred             -------HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chHHHHH
Confidence                   24455667778888877888888899999999999999987764      23345555556533  4444444


Q ss_pred             HHHHHHHHHHH
Q 012965          419 CSIFLLVASVL  429 (452)
Q Consensus       419 ~~~~~~~~~~~  429 (452)
                      .+.+.++....
T Consensus       374 ~~~~~~~~~~~  384 (392)
T PRK12382        374 GAISAVLGIIV  384 (392)
T ss_pred             HHHHHHHHHHH
Confidence            44444444333

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.96  E-value=2.2e-26  Score=223.72  Aligned_cols=358  Identities=11%  Similarity=0.038  Sum_probs=207.1

Q ss_pred             chhhHHHHHHHHHHHHhhhhh----hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHH
Q 012965           36 NSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLT  111 (452)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~----~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~  111 (452)
                      ++.+|..+..+++.......+    .+.+|.+.++ |+|+.+.|++.+...+...+++++.|+++||+|||+++..+.++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~  102 (452)
T PRK11273         24 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL  102 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHH
Confidence            344455444444444444433    4556777777 99999999999998888889999999999999999999999998


Q ss_pred             HHHHH-HHhcC----ccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 012965          112 YILSC-ITKHS----PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSG  183 (452)
Q Consensus       112 ~~i~~-l~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~  183 (452)
                      .+++. ++++.    ++++.+++.|++.|++.+...+.... .+.|+   ++|++..+.    .+.+..+|..   ..++
T Consensus       103 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~-~~~~~~~~~~r~~~~~~----~~~~~~~g~~---~~~~  174 (452)
T PRK11273        103 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGR-TMVHWWSQKERGGIVSV----WNCAHNVGGG---LPPL  174 (452)
T ss_pred             HHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHH-HHHHhCChHHHHHHHHH----HHHHHHhhhh---HHHH
Confidence            88865 44553    47888999999999999988776655 55655   334444432    2222222221   2222


Q ss_pred             hhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHhccccccCCC---Ccch-------------hHHHHHHHh-hHHhhcc
Q 012965          184 LFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDP---SESK-------------DLLTQFRGA-AVAIASD  246 (452)
Q Consensus       184 ~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------------~~~~~~~~~-~~~~~~~  246 (452)
                      ..+..+...  .+||..|++.+.+.++..++.....||++++.   ++++             +..++.++. .+..+|+
T Consensus       175 l~~~~~~~~--~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (452)
T PRK11273        175 LFLLGMAWF--NDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPN  252 (452)
T ss_pred             HHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcC
Confidence            222111111  26777888776665554444433444432210   0000             000001111 1236678


Q ss_pred             hhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCC--CCchhHHHHHHH
Q 012965          247 EKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSP--PRVESYMQIVFV  321 (452)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g--~~~~~~~~~~~~  321 (452)
                      +.++...+...+.....+. ...|.|.|+++..+.+.   +.......++.+++.++.|+++||++  ||+. .......
T Consensus       253 ~~~~~~~l~~~~~~~~~~~-~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~-~~~~~~~  330 (452)
T PRK11273        253 KLLWYIAIANVFVYLLRYG-ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA-TGVFFMT  330 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcch-HHHHHHH
Confidence            8888776666666655454 57799999987655543   45556667888899999999999984  3331 1111112


Q ss_pred             HHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhhh-----
Q 012965          322 VSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPL-----  396 (452)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~-----  396 (452)
                      +..+..... .....        .+.    +.........+.......+....+..|.+|++.|+++.|+.+...     
T Consensus       331 l~~~~~~~~-~~~~~--------~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~  397 (452)
T PRK11273        331 LVTIATIVY-WLNPA--------GNP----TVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS  397 (452)
T ss_pred             HHHHHHHHH-HHhcc--------cCh----HHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHH
Confidence            222221111 11111        000    122233333343332223334556789999999999999876531     


Q ss_pred             --hHHHHHHHhccccCCchHHHHHHHH
Q 012965          397 --NIFVCVVLYNVDAFPITVMFGMCSI  421 (452)
Q Consensus       397 --~~~~~~~l~~~~~~~~~~~~~~~~~  421 (452)
                        ++.+.+.+.+..+  +...+..+..
T Consensus       398 ~~g~~v~g~l~~~~g--~~~~f~~~~~  422 (452)
T PRK11273        398 VAASAIVGYTVDFFG--WDGGFMVMIG  422 (452)
T ss_pred             HhhhhhHHHHHHHhc--chHHHHHHHH
Confidence              2234455556544  4444433333

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.96  E-value=1.4e-25  Score=214.23  Aligned_cols=317  Identities=14%  Similarity=0.095  Sum_probs=215.7

Q ss_pred             hhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHH
Q 012965           52 GDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIG  130 (452)
Q Consensus        52 ~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~  130 (452)
                      +.....|.+|.+.+|+|.|+.+.+++.+...+...+++++.|+++||+|||+++..+..+.+++. ++.++++++.+++.
T Consensus        20 ~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (385)
T TIGR00710        20 GIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVL   99 (385)
T ss_pred             HHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence            44455888899999999999999999888888888889999999999999999999999988876 66889999999999


Q ss_pred             HHHHHhHhhhhhhhhhhhhhhhccc---ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHH
Q 012965          131 RILGGIATSLLFSAFESWLVAEHNK---RGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACF  207 (452)
Q Consensus       131 r~l~G~~~~~~~~~~~~~~i~e~~~---r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~  207 (452)
                      |++.|++.+...+...+ ++.|..+   |++..+.    .+..    ..+|..+++.+++.+.++  ++||..+.+.+..
T Consensus       100 ~~l~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~----~~~g~~~g~~~~~~l~~~--~~~~~~~~~~~~~  168 (385)
T TIGR00710       100 RFVQAFGASAGSVISQA-LVRDIYPGEELSRIYSI----LMPV----LALAPAVAPLLGGYILVW--LSWHAIFAFLSLA  168 (385)
T ss_pred             HHHHHcchhHHHHHHHH-HHHHhcCcHHHHHHHHH----HHHH----HHHHHHHHHHHHHHHHHH--cCHHHHHHHHHHH
Confidence            99999999998888766 7777633   3333332    2222    334455555555555543  4667778777666


Q ss_pred             HHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---H
Q 012965          208 LAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---G  284 (452)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~  284 (452)
                      .++.........||+++++++.  ..++..+..++.+++++++...+...+.....+. ...+.|.+.++..+.++   +
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~g  245 (385)
T TIGR00710       169 GILLSALIFFILPETLPYEARI--QISTYFETFLLLLKSKMFWGYALIYGASFGGFFA-FFSGAPFVYIDIMGVSPSVFG  245 (385)
T ss_pred             HHHHHHHHHHhCCCCCCCcccC--CHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHH-HHHcChHHHHHHcCCCHHHHH
Confidence            6655555444556554333221  1122234556678888887766655544444343 46677877765555544   5


Q ss_pred             HHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHH
Q 012965          285 FIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEAC  364 (452)
Q Consensus       285 ~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  364 (452)
                      .......++.+++.++.+++.||+++|+.  +..+.....+.............      .    ..........+.+++
T Consensus       246 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~g~~  313 (385)
T TIGR00710       246 LLFALNIIAMIFGGFLNGRFIKKWGAKSL--LRMGLILFAVSAVLLEITAILGL------G----SWAMIIGPMMFVGIG  313 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHHHHHHHHHHHhcc------c----hHHHHHHHHHHHHHH
Confidence            66677778899999999999999998773  33343333333333222221100      0    012334456667788


Q ss_pred             hhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          365 VGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       365 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      .+...+.......|..| ++++++.++.+..
T Consensus       314 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~  343 (385)
T TIGR00710       314 NSMISSIAMAYALEDFP-HVAGTASALFGTL  343 (385)
T ss_pred             HHHHHHHHHHHHhccCc-ccchHHHHHHHHH
Confidence            88888888888889887 4688888876653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.95  E-value=2.2e-25  Score=212.47  Aligned_cols=323  Identities=14%  Similarity=0.045  Sum_probs=201.5

Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHh
Q 012965           41 NYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK  119 (452)
Q Consensus        41 ~~~~~~~~~~~~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~  119 (452)
                      .++...++..+++.......+...+|++.++.+.+++.+...+...+.+|+.|+++||+||||+++.+..+.+++. ++.
T Consensus         7 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~   86 (393)
T PRK11195          7 AIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLML   86 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHH
Confidence            3444555555666655455556678999999999999888888888999999999999999999999999998865 455


Q ss_pred             cCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcch
Q 012965          120 HSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVA  199 (452)
Q Consensus       120 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~  199 (452)
                      ++++.   ++.|+++|++.+...|+..+ ++.|..+++++....+ ..+..    ..++..++|.+++.+.+.   .|+.
T Consensus        87 ~~~~~---~~~r~l~G~~~a~~~pa~~a-~i~~~~~~~~~~~a~~-~~~~~----~~~~~~~Gp~lgG~l~~~---~~~~  154 (393)
T PRK11195         87 FGIHP---LLAYGLVGIGAAAYSPAKYG-ILTELLPGEKLVKANG-WMEGS----TIAAILLGTVLGGALADP---HAEA  154 (393)
T ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHcCHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHH---HHHH
Confidence            55553   78899999999999999877 8888733333332222 12222    334555555666655542   3566


Q ss_pred             hhHHHHHHHHHHHHHHHhccccccCCCCcc----hhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccc
Q 012965          200 PFDAAACFLAIGMVIILSSWTENYGDPSES----KDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALS  275 (452)
Q Consensus       200 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  275 (452)
                      .+.+.+...++..+ .....||+++++++.    .+..++.++..+.++++|..........+....... .....|.+.
T Consensus       155 ~~~i~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  232 (393)
T PRK11195        155 ALAVCALIYLLAAL-FNLFIPRLGARRPGQSWNPIALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGAT-LRFLVLAWA  232 (393)
T ss_pred             HHHHHHHHHHHHHH-HHhcCCCCcccccccCCCHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            66655544433322 223556543222111    111233334455677777665443333332222222 233344455


Q ss_pred             cCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchh
Q 012965          276 PNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGS  352 (452)
Q Consensus       276 ~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (452)
                      ++..+.++   |.......++.+++++..+++.||.++++  .+..+. ..+............               +
T Consensus       233 ~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~--~~~~g~-~~~~~~~~~~~~~~~---------------~  294 (393)
T PRK11195        233 PVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLR--VLPAGI-LMGLVVLLMALQHSL---------------L  294 (393)
T ss_pred             HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc--hHHHHH-HHHHHHHHHHHHhHH---------------H
Confidence            54445443   67777888899999999999999988776  233332 222222222111111               2


Q ss_pred             hHHHHHHHHHHHhhchhhHHHHHHhhcCCccc-ccchhhhhhhh
Q 012965          353 LQLLGFCTFEACVGIFWPSIMKMRSQYIPEEA-RSTIMNFFRIP  395 (452)
Q Consensus       353 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~-r~~~~g~~~~~  395 (452)
                      .......+.|++.+...+..++..+|..|++. +|++.++.++.
T Consensus       295 ~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~  338 (393)
T PRK11195        295 PAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFN  338 (393)
T ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHH
Confidence            34556667888888878878888888766655 78888887764

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.95  E-value=8.3e-26  Score=221.95  Aligned_cols=331  Identities=15%  Similarity=0.030  Sum_probs=221.6

Q ss_pred             HHHHHHHHHHHHhhhhh----hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHH
Q 012965           40 NNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILS  115 (452)
Q Consensus        40 ~~~~~~~~~~~~~~~~~----~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~  115 (452)
                      |..+....+..+...++    ...+|.+.+|+|.+.++.+++.+...+......++.|+++||+|||+++..+..+++++
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~   84 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLA   84 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            33444444444444444    67788999999999999999988877777778889999999999999999999999997


Q ss_pred             H-HHhcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 012965          116 C-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD  191 (452)
Q Consensus       116 ~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~  191 (452)
                      . ++++++|++.++++|+++|++.+...+.....+..+.   ++|++..+.    .    ..+..+|..++|.+++.+.+
T Consensus        85 ~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~----~----~~~~~~g~~~gp~lgg~l~~  156 (495)
T PRK14995         85 SLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGV----W----AAVGSGGAAFGPLVGGILLE  156 (495)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH----H----HHHHHHHHHHHHHHHHHhhc
Confidence            6 7799999999999999999999998887655232332   334443332    2    22344666777777777776


Q ss_pred             ccCCCcchhhHHHHHHHHHHHHHHHhccccccCCCCcchhHHHH-------------H----------------------
Q 012965          192 SFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQ-------------F----------------------  236 (452)
Q Consensus       192 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~----------------------  236 (452)
                      +.  +||+.|++...+.++...+.....|+++++++++.+....             .                      
T Consensus       157 ~~--gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (495)
T PRK14995        157 HF--YWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGAL  234 (495)
T ss_pred             cC--ChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence            54  5667788877666666555554556543322221111000             0                      


Q ss_pred             ------HHh--------hHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HHHHHHHHHHHHHHhH
Q 012965          237 ------RGA--------AVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSS  299 (452)
Q Consensus       237 ------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~  299 (452)
                            ..+        ..+++|+|.+........+.....+. ...+.|.|+++..+.++   +.......++..++.+
T Consensus       235 ~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~  313 (495)
T PRK14995        235 LLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVG-FELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGP  313 (495)
T ss_pred             HHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence                  000        01345666655544444444444343 46678888876666654   6777777888999999


Q ss_pred             HHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhc
Q 012965          300 LASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQY  379 (452)
Q Consensus       300 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  379 (452)
                      +.|++.||+|+|+  .+..+..+..+...........        .+    .+......++.|++.+...+.....+.+.
T Consensus       314 ~~g~l~~r~g~~~--~~~~g~~~~~~~~~~l~~~~~~--------~~----~~~~~~~~~l~G~g~g~~~~~~~~~~~~~  379 (495)
T PRK14995        314 IAGILVSRLGLRL--VATGGMALSALSFYGLAMTDFS--------TQ----QWQAWGLMALLGFSAASALLASTSAIMAA  379 (495)
T ss_pred             HHHHHHHHcCchH--HHHHHHHHHHHHHHHHHHhcCC--------Cc----hHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence            9999999999876  3444444443333332222111        00    02345567788999998888888899999


Q ss_pred             CCcccccchhhhhhhh
Q 012965          380 IPEEARSTIMNFFRIP  395 (452)
Q Consensus       380 ~p~~~r~~~~g~~~~~  395 (452)
                      .|+++++.+.++.++.
T Consensus       380 ~~~~~~g~~~~~~~~~  395 (495)
T PRK14995        380 APPEKAAAAGAIETMA  395 (495)
T ss_pred             CCHHhcchHHHHHHHH
Confidence            9999999998887764

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.95  E-value=1.4e-25  Score=213.53  Aligned_cols=353  Identities=17%  Similarity=0.135  Sum_probs=215.2

Q ss_pred             HHHHHHHHhhhhhhhhHHHH-HhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHH-HHHHHHHH-HHhc
Q 012965           44 LVYSLMMAGDWLQGPYVYYL-YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTY-CLTYILSC-ITKH  120 (452)
Q Consensus        44 ~~~~~~~~~~~~~~p~l~~i-~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~-~~~~~i~~-l~~~  120 (452)
                      ...++..++.+...|.+|.. .+++|.|+.++|++.+...+.+.+.+++.|+++||+||||.++.. ....+++. ++++
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~   83 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW   83 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh
Confidence            34455566677778888764 578999999999998888888889999999999999999876654 44445554 6688


Q ss_pred             CccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcch
Q 012965          121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVA  199 (452)
Q Consensus       121 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~  199 (452)
                      ++|++.+++.|++.|.+.+...|...+ +..|. +++++.......    ....+..+|..+++.+++.+.+.  ++||.
T Consensus        84 ~~~~~~l~~~~~~~g~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~ig~~~~~~l~~~--~~~~~  156 (375)
T TIGR00899        84 NRNYFLLLVLGVLLSSFASTANPQLFA-LAREHADRTGREAVMFSS----VMRAQISLAWVIGPPLAFWLALG--FGFTV  156 (375)
T ss_pred             cchHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHhhhcchhhHHHHH----HHHHHHhHHHHHhhhHHHHHHHh--cccHH
Confidence            999999999999999887777777655 66665 333332221111    12223345666666666666643  46778


Q ss_pred             hhHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCC
Q 012965          200 PFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDE  279 (452)
Q Consensus       200 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  279 (452)
                      .|.+.+...++..+......||.+++++++++     +.+.++..++++.+.......+.... ......+.|.+.++..
T Consensus       157 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  230 (375)
T TIGR00899       157 MFLTAALAFVLCGVLVWLFLPSYPRGAPGALT-----RLEVRGLLASRDTRLLFVACTLMWGC-NILYIINMPLLIIHEL  230 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccCcccccC-----cchhhhhhcCcchHHHHHHHHHHHHH-HHHHHhhhHHHHHHHc
Confidence            88887776665555554445664432221111     11222345566655443333332222 2223456677766555


Q ss_pred             CCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHH
Q 012965          280 EIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLL  356 (452)
Q Consensus       280 ~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (452)
                      +.++   +...........++.++.+++.||++||+.  +........+...........               +....
T Consensus       231 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~--~~~~~~~~~~~~~~~~~~~~~---------------~~~~~  293 (375)
T TIGR00899       231 GLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRL--MLLAALAGVAFYTGLAADNSL---------------WALLM  293 (375)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHHHH---------------HHHHH
Confidence            5544   444444455677788899999999998873  333333322222221111111               23445


Q ss_pred             HHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh------hhHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Q 012965          357 GFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNVDAFPITVMFGMCSIFLLVASVL  429 (452)
Q Consensus       357 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  429 (452)
                      ...+.+++.+...+....+.+|..|++ +++++|+.+..      .+..+++.+.+..  ++...+...++..++....
T Consensus       294 ~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~  369 (375)
T TIGR00899       294 LQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERW--SYHAVYWFAIVMLIVALFC  369 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHH
Confidence            566677778877788888999998875 56888876653      2334445555543  3444455544444444333

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.95  E-value=1.4e-25  Score=214.29  Aligned_cols=333  Identities=17%  Similarity=0.117  Sum_probs=212.6

Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHHH-HhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-H
Q 012965           40 NNYLLVYSLMMAGDWLQGPYVYYL-YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-I  117 (452)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~p~l~~i-~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l  117 (452)
                      +..+...++...+.....|+++.. .+++|.|+.++|.+.+...+...+.+++.|+++||+|||+++..+..+.+++. +
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~   92 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFAT   92 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            344455556666666667777654 47899999999999998888888888999999999999999999999999876 6


Q ss_pred             HhcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccC
Q 012965          118 TKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS  194 (452)
Q Consensus       118 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~  194 (452)
                      +.++++++.+++.|+++|++.+...+...+ ++.|.   ++|++..+..+.    ...    +|..+++.+++.+.   .
T Consensus        93 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~----~~~----~g~~ig~~l~g~l~---~  160 (400)
T PRK11646         93 MAIAHEPWLLWLSCILSGLGGTLFDPPRTA-LVIKLIRPHQRGRFFSLLMM----QDS----AGAVIGALLGSWLL---Q  160 (400)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHH----HHH----HHHHHHHHHHHHHH---H
Confidence            678899999999999999999888777756 66655   445554443222    333    44444555555544   2


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhcccc
Q 012965          195 LGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPAL  274 (452)
Q Consensus       195 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  274 (452)
                      ++|+..|++.++..++..+......||.++++ +.    ++.+++.++.+++++++............ +.....+.|.+
T Consensus       161 ~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~  234 (400)
T PRK11646        161 YDFRLVCATGAVLFVLAAAFNAWLLPAYKLST-VR----TPVREGMTRVLRDKRFVTYVLTLTGYYML-AVQVMLMLPIM  234 (400)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCcccccc-cc----hhhHHHHHHHHcCchHHHHHHHHHHHHHH-HHHHHHhhhhh
Confidence            46778888776665554444333445432211 11    12233455677888876654433322222 22235578888


Q ss_pred             ccCCCCCch--HHHHHHHHHHHHHHhHHHHHHhcc-CCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccch
Q 012965          275 SPNDEEIPH--GFIFATFMLASMLGSSLASRLMAR-SPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSG  351 (452)
Q Consensus       275 ~~~~~~~~~--~~~~~~~~i~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (452)
                      .++..+.+.  +...+...+....+....+++.|| ++.++  .+..+..+.++...........               
T Consensus       235 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~~~~~~~~l~~~~~~---------------  297 (400)
T PRK11646        235 VNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEH--RLMAGLLIMSLSMFPIGMVSNL---------------  297 (400)
T ss_pred             HHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHhhhH---------------
Confidence            776544322  555555555555555555666654 54343  2334443444333332222111               


Q ss_pred             hhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhhh------hHHHHHHHhcc
Q 012965          352 SLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPL------NIFVCVVLYNV  407 (452)
Q Consensus       352 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~------~~~~~~~l~~~  407 (452)
                      +...+...+++.+.+...|...++..|..|+++|++++|+.+...      ++.+++.+.+.
T Consensus       298 ~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~  359 (400)
T PRK11646        298 QQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL  359 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence            233445566777777777888999999999999999999888642      33455566554

>PRK03699 putative transporter; Provisional

Probab=99.95  E-value=1.3e-25  Score=214.70  Aligned_cols=321  Identities=12%  Similarity=0.064  Sum_probs=200.1

Q ss_pred             hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHH
Q 012965           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G  135 (452)
                      ++.+|++.+++|+|.++.+.+.+...+...++.++.|++.||+|||+++..+.++.+++. +++++++++.+++.|+++|
T Consensus        27 g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G  106 (394)
T PRK03699         27 GMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLG  106 (394)
T ss_pred             hhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence            777889999999999999998888888777888899999999999999999999888876 6788999999999999999


Q ss_pred             hHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHH
Q 012965          136 IATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVII  215 (452)
Q Consensus       136 ~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~  215 (452)
                      ++.+...+...+ ++.|..+++++..... ...    .+..+|..++|.+.+.+.+ ..++||..|.+.+++.++..++.
T Consensus       107 ~~~g~~~~~~~~-~i~~~~~~~~r~~~~~-~~~----~~~~~g~~~~~~~~~~l~~-~~~gw~~~f~~~~~~~~~~~~~~  179 (394)
T PRK03699        107 VVSGITMSIGTF-LITHVYEGKQRGSRLL-FTD----SFFSMAGMIFPIIAAYLLA-RSIEWYWVYACIGLVYVAIFILT  179 (394)
T ss_pred             HhhHhhccchhH-HhhhhcccchHHHHHH-HHH----HHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHH
Confidence            999988877655 6666632222221111 111    2233455555555555443 23577888887666655544433


Q ss_pred             Hh-ccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HHHHHHHH
Q 012965          216 LS-SWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFM  291 (452)
Q Consensus       216 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~  291 (452)
                      .. ..|+.++++++  +..    +..+. ..+++++.......+.....+. ...|.|.|.++..+.+.   +...+...
T Consensus       180 ~~~~~p~~~~~~~~--~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~l~~~~g~s~~~~~~~~~~~~  251 (394)
T PRK03699        180 LFSEFPALGKHAPK--ADK----PVAKE-KWGIGVLFLAIAALLYILAQLT-FISWVPEYAQKKFGMSLEDAGNLVSNFW  251 (394)
T ss_pred             HhcCCccccccCcc--ccC----ccccc-cCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCChHHhhHHHHHHH
Confidence            32 22321111111  000    00111 1234455444444433333333 57899999977666654   56667777


Q ss_pred             HHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhH
Q 012965          292 LASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPS  371 (452)
Q Consensus       292 i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  371 (452)
                      ++..+++++.++++||+++|+.  +.....+..+......   ...+        .    .......+..|++.+..++.
T Consensus       252 ~~~~ig~~~~g~l~dr~~~~~~--l~~~~~~~~~~~~~~~---~~~~--------~----~~~~~~~~~~G~~~~~~~~~  314 (394)
T PRK03699        252 MAYMVGMWIFSFIVRFFDLQRI--LTVLAGLALVLMYLFV---NTDD--------P----SHLLYAILGLGFFSSAIYTT  314 (394)
T ss_pred             HHHHHHHHHHHHHHHHhchhhH--HHHHHHHHHHHHHHHH---HcCC--------c----hHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999998873  3333333222222211   1100        0    13344556677777777788


Q ss_pred             HHHHHhhcCCcccccchhhhhhhh------hhHHHHHHHhccccC
Q 012965          372 IMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNVDAF  410 (452)
Q Consensus       372 ~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~  410 (452)
                      ..+...|..|++ +++..|.....      .++.+.+.+.+..++
T Consensus       315 ~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~  358 (394)
T PRK03699        315 IITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGL  358 (394)
T ss_pred             HHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCc
Confidence            888888877654 44455444332      344455556555443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.95  E-value=3.4e-25  Score=212.51  Aligned_cols=321  Identities=14%  Similarity=0.132  Sum_probs=201.6

Q ss_pred             hhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHH
Q 012965           52 GDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIG  130 (452)
Q Consensus        52 ~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~  130 (452)
                      ...+..|.+|.+.+++|.+.++.++..+..++...+++++.|+++||+|||+++..+..+++++. ++++++|++.++++
T Consensus        31 ~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~  110 (413)
T PRK15403         31 TTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIA  110 (413)
T ss_pred             HHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            33444888999999999999999988888888888889999999999999999999999998876 67889999999999


Q ss_pred             HHHHHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHH
Q 012965          131 RILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAI  210 (452)
Q Consensus       131 r~l~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~  210 (452)
                      |+++|++.+...+.... ++.|..+++++..... ....    +..+++.+++.+++.+.++  ++||..|++.++..++
T Consensus       111 r~l~Gi~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~g~~lg~~l~~~--~gw~~~f~~~~~~~~i  182 (413)
T PRK15403        111 RFIQGTSICFIATVGYV-TVQEAFGQTKGIKLMA-IITS----IVLVAPIIGPLSGAALMHF--VHWKVLFAIIAVMGLI  182 (413)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHhcCHHHHHHHHH-HHHH----HHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHH
Confidence            99999998865554433 5666533222222111 1222    2345556666666665543  5678888887777666


Q ss_pred             HHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HHHH
Q 012965          211 GMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIF  287 (452)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~  287 (452)
                      ..+...+..||++++++++ ...++..++.++++|||+++.......+.....+. ...+.|.+.++..+.++   +...
T Consensus       183 ~~~~~~~~lp~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~-~~~~~P~~l~~~~g~s~~~~gl~~  260 (413)
T PRK15403        183 AFVGLLLAMPETVKRGAVP-FSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMS-WVAVSPVILIDAGGMTTSQFAWTQ  260 (413)
T ss_pred             HHHHHHHhCCCCccccCCC-CChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-HHHhChHHHHHhcCCCHHHHHHHH
Confidence            6555454567754432221 12223345667788999998876666555555444 46678988887767655   4444


Q ss_pred             HHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhc
Q 012965          288 ATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGI  367 (452)
Q Consensus       288 ~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  367 (452)
                      .....+.+++..+.+++.+|..+++.  ......+..++............      +.    .+......++.+++.+.
T Consensus       261 ~~~~~~~~i~~~l~~~~~~~~~~~~~--~~~~~~~~~ig~~l~~~~~~~~~------~~----~~~~~~~~~l~~~G~~~  328 (413)
T PRK15403        261 VPVFGAVIVANAIVARFVKDPTEPRF--IWRAVPIQLVGLALLIVGNLLWP------HV----WLWSVLGTSLYAFGIGL  328 (413)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCchhH--HHHHHHHHHHHHHHHHHHHHHcc------cc----HHHHHHHHHHHHHHHHH
Confidence            44556677777777776655443331  21111111111111111110000      00    01245677778888888


Q ss_pred             hhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          368 FWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       368 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      ..|......-+.. +..+|++.++.+..
T Consensus       329 ~~p~~~~~al~~~-~~~~G~a~a~~~~~  355 (413)
T PRK15403        329 IFPTLFRFTLFSN-NLPKGTVSASLNMV  355 (413)
T ss_pred             HhHHHHHHHhccC-CCCCcHHHHHHHHH
Confidence            8777775433222 22356666655543

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.95  E-value=2.7e-25  Score=212.32  Aligned_cols=364  Identities=15%  Similarity=0.148  Sum_probs=211.6

Q ss_pred             ccchhhHHHHHHHHHHHHhhhhhhhhHHHH-HhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHH-HHHHH
Q 012965           34 AFNSFKNNYLLVYSLMMAGDWLQGPYVYYL-YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACV-TYCLT  111 (452)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i-~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~-~~~~~  111 (452)
                      .+++..+..++..++...+..+..|.++.. .+|+|.|++++|.+.+.....+.+.+++.|.++||+||||.++ .+.+.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~   91 (393)
T PRK15011         12 SFDLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLL   91 (393)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Confidence            344444556666677777777777877664 5789999999999877666666777766655599999998755 44555


Q ss_pred             HHHHH-HHhcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 012965          112 YILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLL  189 (452)
Q Consensus       112 ~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l  189 (452)
                      .+++. +.+++++++.+++.+.+.|...+...|.... +..|+ ++|++..+....    ....+..+|..+++.+++.+
T Consensus        92 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~lg~~~g~~i~~~l  166 (393)
T PRK15011         92 GVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFA-LAREHADKTGREAVMFSS----FLRAQVSLAWVIGPPLAYAL  166 (393)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHhhhccchHHHHHH----HHHHHHHHHHHHhhHHHHHH
Confidence            55554 5678899998776655555444556666644 66665 444443332222    22334456667777777777


Q ss_pred             hcccCCCcchhhHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchh-HHHHHHHHHhhhchhhhhhh
Q 012965          190 VDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEK-IALLGAIQSLFEGSMYTFVF  268 (452)
Q Consensus       190 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  268 (452)
                      .++  ++||..|...++..++..+......||.++++++.++..    +   ...++++ .+.......... ..+....
T Consensus       167 ~~~--~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~  236 (393)
T PRK15011        167 AMG--FSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLATGTL----E---APRRNRRDTLLLFVICTLMW-GTNSLYI  236 (393)
T ss_pred             HHh--cChHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccccc----c---ccccccccHHHHHHHHHHHH-HHHHHHH
Confidence            653  467788888777666655555545666543322211110    1   1122222 222222222222 2233345


Q ss_pred             hhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCC
Q 012965          269 LWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSG  345 (452)
Q Consensus       269 ~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (452)
                      .+.|.|.++..+.+.   +.......+..+++.++.|+++||++||+.  +..........+.........         
T Consensus       237 ~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~--~~~~~~~~~~~~~~~~~~~~~---------  305 (393)
T PRK15011        237 INMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFL--MRVAAVAGVCFYAGMLMAHSP---------  305 (393)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH--HHHHHHHHHHHHHHHHHHhhH---------
Confidence            678888876666654   455555556678889999999999998872  333322222222211111111         


Q ss_pred             CcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh------hhHHHHHHHhccccCCchHHHHHH
Q 012965          346 GISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNVDAFPITVMFGMC  419 (452)
Q Consensus       346 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~  419 (452)
                            +..+....+.++..+...+....+.+|..|++ |+++.++.+..      .+..+++.+.+..  ++...+..+
T Consensus       306 ------~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~--g~~~~~~~~  376 (393)
T PRK15011        306 ------AILLGLQLLNAIYIGILGGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIW--NYHAVFWFA  376 (393)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHH
Confidence                  23344445555566655666677888998865 88888776553      3335555666543  454555555


Q ss_pred             HHHHHHHHHHHHh
Q 012965          420 SIFLLVASVLQRR  432 (452)
Q Consensus       420 ~~~~~~~~~~~~~  432 (452)
                      .+..++..+...+
T Consensus       377 ~~~~~~~~~~~~~  389 (393)
T PRK15011        377 LVMIIATLFCLLR  389 (393)
T ss_pred             HHHHHHHHHHHHh
Confidence            5554444444443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.95  E-value=1.8e-25  Score=220.63  Aligned_cols=352  Identities=14%  Similarity=0.079  Sum_probs=205.9

Q ss_pred             CccchhhHHHHHHHHHHHHhhhhh----hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHH
Q 012965           33 SAFNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTY  108 (452)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~----~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~  108 (452)
                      +..++.+|+.+....+..+.+.++    .+.+|.+.+++|.|+.+.+++.+...+...+++++.|+++||+|||+++..+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~   91 (496)
T PRK03893         12 RHLNRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVIS   91 (496)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            333455665555555555444444    7778889999999999999988888888888889999999999999999999


Q ss_pred             HHHHHHHH-HHhcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012965          109 CLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGL  184 (452)
Q Consensus       109 ~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~  184 (452)
                      .++.+++. ++++++|++.+++.|++.|++.+...+.... ++.|.   ++|++..+.    .    ..+..+|..+++.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~----~----~~~~~~g~~~~~~  162 (496)
T PRK03893         92 IVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSAT-YVIESWPKHLRNKASGF----L----ISGFSIGAVVAAQ  162 (496)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCHHHHHHHHHH----H----HHHHHHHHHHHHH
Confidence            99988876 6688999999999999999999988888756 67776   333333332    2    2334466666666


Q ss_pred             hhhhhhcccCCCcchhhHHHHHHHHHHHHHHHhccccccCCCC--cchhHHHHHHHh----hHHh---------------
Q 012965          185 FGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPS--ESKDLLTQFRGA----AVAI---------------  243 (452)
Q Consensus       185 l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~---------------  243 (452)
                      +.+.+.+.  ++||..|.+..+..++. ++.....||+++.++  +.++..++..+.    .+..               
T Consensus       163 ~~~~l~~~--~~w~~~f~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (496)
T PRK03893        163 VYSLVVPV--WGWRALFFIGILPIIFA-LWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWF  239 (496)
T ss_pred             HHHHHhcc--CCHHHHHHHHHHHHHHH-HHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence            66666643  56677776644433332 222334455322110  000000000000    0000               


Q ss_pred             -h------------------------------cchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HHHHHH
Q 012965          244 -A------------------------------SDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFAT  289 (452)
Q Consensus       244 -~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~  289 (452)
                       .                              ++++.........+...........+.|.|+++..+.+.   +...+.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~  319 (496)
T PRK03893        240 CFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFF  319 (496)
T ss_pred             HHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence             0                              000000000000000000000134577888865556544   667777


Q ss_pred             HHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchh
Q 012965          290 FMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFW  369 (452)
Q Consensus       290 ~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  369 (452)
                      ..++.+++.++.+++.||++||+.  +..+..+..+...........         +    .+......+..+.......
T Consensus       320 ~~~~~~~g~~~~g~l~dr~g~~~~--~~~~~~~~~~~~~~~~~~~~~---------~----~~~~~~~~~~~~~~~~~~~  384 (496)
T PRK03893        320 SGFGAAVGCCVGGFLGDWLGTRKA--YVCSLLISQLLIIPVFAIGGA---------N----VWVLGLLLFFQQMLGQGIS  384 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchHH--HHHHHHHHHHHHHHHhhcccc---------H----HHHHHHHHHHHHHHhcccc
Confidence            888899999999999999998873  333333323222221111110         0    0112222222222222234


Q ss_pred             hHHHHHHhhcCCcccccchhhhhhhh------hhHHHHHHHhccccCC
Q 012965          370 PSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNVDAFP  411 (452)
Q Consensus       370 ~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~  411 (452)
                      +...++.+|.+|++.|++++|+.+..      .++.+++.+.+..+++
T Consensus       385 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~  432 (496)
T PRK03893        385 GLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLG  432 (496)
T ss_pred             hhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChH
Confidence            66778899999999999999886653      3445556666654433

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.95  E-value=6.3e-25  Score=210.24  Aligned_cols=317  Identities=13%  Similarity=0.079  Sum_probs=202.8

Q ss_pred             HhhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHH
Q 012965           51 AGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMI  129 (452)
Q Consensus        51 ~~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~  129 (452)
                      +......|.+|.+.+++|.|+.+.+++.+...+...+++++.|+++||+|||+++..+..+..++. ++.++++++.+++
T Consensus        22 ~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~  101 (394)
T PRK11652         22 MAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIA  101 (394)
T ss_pred             HHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence            344555788899999999999999999888888888899999999999999999999999888875 6678899999999


Q ss_pred             HHHHHHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHH
Q 012965          130 GRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLA  209 (452)
Q Consensus       130 ~r~l~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~  209 (452)
                      .|++.|++.+...+.... +..|..++.++..     .......+..++..++|.+++.+.+.  ++||..|.+.++..+
T Consensus       102 ~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~i~~~l~~~--~g~~~~f~~~~~~~~  173 (394)
T PRK11652        102 ASAIQGLGTGVGGVMART-LPRDLYEGTQLRH-----ANSLLNMGILVSPLLAPLIGGLLTTL--FGWRACYLFLLLLGA  173 (394)
T ss_pred             HHHHHHhhhhHHHHHHHH-HHHHhcCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhc--cChHHHHHHHHHHHH
Confidence            999999998877666544 5666522222221     11122344556666666776666643  467777877666555


Q ss_pred             HHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HHH
Q 012965          210 IGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFI  286 (452)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~  286 (452)
                      +.........||+++++++++    +.++..++.+++++.+.............. ....+.+.+.++..+.+.   +..
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~  248 (394)
T PRK11652        174 GVTFSMARWMPETRPADARRT----RVLASYRTLLSNRRFNCYLLMLIGTLAGIA-VFEACSGVLMGAVLGLSSMTVSIL  248 (394)
T ss_pred             HHHHHHHHhCCccCccccchh----HHHHHHHHHHcChHHHHHHHHHHHHHHHHH-HHHHhChHHHHHHcCCCHHHHHHH
Confidence            444444335566543322211    234456667788877654433332222222 224455666666556554   455


Q ss_pred             HHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhh
Q 012965          287 FATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVG  366 (452)
Q Consensus       287 ~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  366 (452)
                      .....++.+++..+.+++.||.+++.    ......................          ...+.......+.+++.+
T Consensus       249 ~~~~~~~~~~g~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~  314 (394)
T PRK11652        249 FILPIPAAFFGAWFAGRPNKRFSTLM----WQSVICCLLAGLLMWIPGWFGV----------MNVWTLLVPAALFFFGAG  314 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcc----------ccHHHHHHHHHHHHHHHH
Confidence            55566778888888888888886222    1221111111111111111100          001345566778888888


Q ss_pred             chhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          367 IFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       367 ~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      ...|...++..|..|+ ++++..++.+..
T Consensus       315 ~~~~~~~~~~~~~~~~-~~g~~~~~~~~~  342 (394)
T PRK11652        315 MLFPLATSGAMEPFPY-LAGTAGALLGGL  342 (394)
T ss_pred             HHHHHHHHHHHhhccc-cchHHHHHHHHH
Confidence            8889999999999875 678887776653

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.95  E-value=9.1e-25  Score=208.99  Aligned_cols=332  Identities=14%  Similarity=0.103  Sum_probs=202.5

Q ss_pred             HHHHHHHhhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCcc
Q 012965           45 VYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQ  123 (452)
Q Consensus        45 ~~~~~~~~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~  123 (452)
                      .......+.....+.+|.+.+++|.|+.+.++..+...+...++.++.|+++||+|||+.+..+.++..++. ++..+++
T Consensus        11 ~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~   90 (392)
T PRK10473         11 LVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAET   90 (392)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCc
Confidence            333333444444788899999999999999988888887777888999999999999999999999988876 6688899


Q ss_pred             HHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchh
Q 012965          124 YKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAP  200 (452)
Q Consensus       124 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~  200 (452)
                      ++.+++.|+++|++.+...+...+ ++.|.   ++|++..+..    +.    ...++..+++.+++.+.+.  ++|+..
T Consensus        91 ~~~~~~~~~l~g~~~~~~~~~~~~-~i~~~~~~~~r~~~~~~~----~~----~~~i~~~~~~~i~~~l~~~--~g~~~~  159 (392)
T PRK10473         91 SSLFLAGRFLQGIGAGCCYVVAFA-ILRDTLDDRRRAKVLSLL----NG----ITCIIPVLAPVLGHLIMLK--FPWQSL  159 (392)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHH-HHHHHcCHHHHHHHHHHH----HH----HHHHHHHHHHHHHHHHHhC--cChHHH
Confidence            999999999999999988777655 77776   3333333322    21    2334555566666655533  466777


Q ss_pred             hHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCC
Q 012965          201 FDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEE  280 (452)
Q Consensus       201 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  280 (452)
                      +.+.+.+.++...+.....||++++++++++   +..+..++.+++++++.......+....... ...+.|.+.++..+
T Consensus       160 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g  235 (392)
T PRK10473        160 FYTMAAMGILVLLLSLFILKETRPARAPAAS---SKPRENSESLLNRFFLSRLVITTLSVTVILT-FVNTSPVLLMEQMG  235 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCcccCCcc---chHHHHHHHHhCHHHHHHHHHHHHHHHHHHH-HHHhCHHHHHHHcC
Confidence            8777666665555544455665433221111   1122334556777766544443333332222 34556666655555


Q ss_pred             Cch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHH
Q 012965          281 IPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLG  357 (452)
Q Consensus       281 ~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (452)
                      .+.   +.......++.+++..+.+++.||+|||+.  ...+.....+...........               ......
T Consensus       236 ~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~--~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~  298 (392)
T PRK10473        236 FSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTL--MLTSQVLFLAAGITLALSPSH---------------AVSLFG  298 (392)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHHHHHHHHHHHH---------------HHHHHH
Confidence            544   556667778899999999999999998773  444444434333333322222               122333


Q ss_pred             HHHHHHHhhchhhHHHHHHhhcCCccccc-chhhhhhhh--hhHHHHHHHhccccC
Q 012965          358 FCTFEACVGIFWPSIMKMRSQYIPEEARS-TIMNFFRIP--LNIFVCVVLYNVDAF  410 (452)
Q Consensus       358 ~~~~g~~~~~~~~~~~~~~~~~~p~~~r~-~~~g~~~~~--~~~~~~~~l~~~~~~  410 (452)
                      ..+.+.+.+...+..  ...+..|.++|+ .+.++.++.  .+..+++++.+..+.
T Consensus       299 ~~l~~~g~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~~~g~  352 (392)
T PRK10473        299 ITLICAGFSVGFGVA--MSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAVLGI  352 (392)
T ss_pred             HHHHHHHHHHHhHHH--HHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            344444444444333  334555655443 333333322  344555555554343

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.95  E-value=2.5e-25  Score=213.17  Aligned_cols=343  Identities=15%  Similarity=0.079  Sum_probs=216.7

Q ss_pred             hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHH
Q 012965           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G  135 (452)
                      ++..|.+.+++|.|+.+.|++.+...+...+.+++.|+++||+|||+++..+.++.+++. ++++++|++.+++.|++.|
T Consensus        14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g   93 (399)
T TIGR00893        14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLG   93 (399)
T ss_pred             hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            556678889999999999999999988888999999999999999999999999988876 6688999999999999999


Q ss_pred             hHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHH
Q 012965          136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM  212 (452)
Q Consensus       136 ~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~  212 (452)
                      ++.+...+.... ++.|.   ++|++..+..    .    .+..+|..+++.+++.+.+..  +|++.|...++..++..
T Consensus        94 ~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~----~----~~~~~g~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~  162 (399)
T TIGR00893        94 AAEAPFFPGIIL-IVASWFPASERATAVSIF----N----SAQGLGGIIGGPLVGWILIHF--SWQWAFIIEGVLGIIWG  162 (399)
T ss_pred             HHHHhhhhHHHH-HHHHhCCHHHHHHHHHHH----H----HhchHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHH
Confidence            999999888756 78876   3344433322    2    234455566666666655444  56777877666655554


Q ss_pred             HHHHhccccccCCCCcch-hHHH-----------------HHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhcccc
Q 012965          213 VIILSSWTENYGDPSESK-DLLT-----------------QFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPAL  274 (452)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~-~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  274 (452)
                      +......||+++++++.+ +.++                 +..+..++.+++|+++.......+....... ...+.|.+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  241 (399)
T TIGR00893       163 VLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGF-FLTWFPTY  241 (399)
T ss_pred             HHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHH-HHHHHHHH
Confidence            444433444332211100 0000                 0011234567778877766665555555443 57788888


Q ss_pred             ccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHH--HHHHHHHHHHHHhhhcCCCCcCCCCccc
Q 012965          275 SPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFV--VSSVSLLLPIVTSFLVAPSNVKSGGISF  349 (452)
Q Consensus       275 ~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (452)
                      .++..+.+.   +.......++.+++.++.+++.||++||+.........  ............... .      +.   
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~---  311 (399)
T TIGR00893       242 LVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNY-V------NI---  311 (399)
T ss_pred             HHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcc-c------hh---
Confidence            876666543   56667777889999999999999999885211111111  111111111111110 0      00   


Q ss_pred             chhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhhh------hHHHHHHHhccccCCchHHHHHHHHHH
Q 012965          350 SGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPL------NIFVCVVLYNVDAFPITVMFGMCSIFL  423 (452)
Q Consensus       350 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~  423 (452)
                       .+.......+.+.+.+ ..+..+++.+|.+|+++|+++.|+.+...      ++.+.+.+.+..+ ++...+...++..
T Consensus       312 -~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g-~~~~~~~~~~~~~  388 (399)
T TIGR00893       312 -PYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG-SFAGALMVVAALA  388 (399)
T ss_pred             -HHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC-chhHHHHHHHHHH
Confidence             0122222333333333 67889999999999999999998887642      2234444555433 1334444444333


Q ss_pred             H
Q 012965          424 L  424 (452)
Q Consensus       424 ~  424 (452)
                      +
T Consensus       389 ~  389 (399)
T TIGR00893       389 L  389 (399)
T ss_pred             H
Confidence            3

>PRK10504 putative transporter; Provisional

Probab=99.95  E-value=2.1e-25  Score=218.66  Aligned_cols=319  Identities=13%  Similarity=0.069  Sum_probs=207.2

Q ss_pred             hhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHH
Q 012965           54 WLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRI  132 (452)
Q Consensus        54 ~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~  132 (452)
                      ....+.+|.+.+|+|.|+.+.+++.+...+...++.++.|+++||+|||+++..+..+.+++. +++++++++.+++.|+
T Consensus        27 ~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  106 (471)
T PRK10504         27 TIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARV  106 (471)
T ss_pred             HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            344788889999999999999988877777667888899999999999999999988888875 5678899999999999


Q ss_pred             HHHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHH
Q 012965          133 LGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM  212 (452)
Q Consensus       133 l~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~  212 (452)
                      ++|++.+...+.... ++.|..+++++.....     ....+..+|..+++.+++.+.++  ++||+.|.+......+..
T Consensus       107 l~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~g~~~~g~l~~~--~gw~~~f~~~~~~~~l~~  178 (471)
T PRK10504        107 LQGVGGAMMVPVGRL-TVMKIVPREQYMAAMT-----FVTLPGQVGPLLGPALGGLLVEY--ASWHWIFLINIPVGIIGA  178 (471)
T ss_pred             HHHhhhHHHHHHHHH-HHHHHcCHHHHHHHHH-----HHHHHHHHHHHhhhHHHHHHHhh--ccHHHHHHHHHHHHHHHH
Confidence            999999999888755 6777644333332111     12223345666666777666654  456777877666555554


Q ss_pred             HHHHhccccccCCCCcchhH-------------------H-------------------------HHHH--H--hhHHhh
Q 012965          213 VIILSSWTENYGDPSESKDL-------------------L-------------------------TQFR--G--AAVAIA  244 (452)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~-------------------~-------------------------~~~~--~--~~~~~~  244 (452)
                      .......|+.+.++++.+..                   .                         ++.+  +  ...+++
T Consensus       179 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  258 (471)
T PRK10504        179 IATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSLKLF  258 (471)
T ss_pred             HHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHh
Confidence            44443334322111110000                   0                         0000  0  011356


Q ss_pred             cchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHH
Q 012965          245 SDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFV  321 (452)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~  321 (452)
                      |||++........+.... +.....+.|.|.++..+.++   +.......++.+++..+.+++.||+|+|+.  +..+..
T Consensus       259 ~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~--~~~~~~  335 (471)
T PRK10504        259 RTRTFSLGLAGSFAGRIG-SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRV--LVATTL  335 (471)
T ss_pred             cccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH--HHHHHH
Confidence            677766655444444433 33345677877775555544   556666667788888999999999998872  444444


Q ss_pred             HHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          322 VSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      +..+...........        . +   .+.......+.|++.+...+..+....+..|++.+++++|+.++.
T Consensus       336 ~~~~~~~~~~~~~~~--------~-~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  397 (471)
T PRK10504        336 GLALVSLLFMLVALL--------G-W---YYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMI  397 (471)
T ss_pred             HHHHHHHHHHhcccc--------c-c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHH
Confidence            444433332221111        0 0   012334456667788878888899999999999999999887764

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.95  E-value=2e-25  Score=216.74  Aligned_cols=337  Identities=9%  Similarity=0.063  Sum_probs=211.2

Q ss_pred             CCCccchhhHHHHHHHHHHHHhhhhh----hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHH
Q 012965           31 TSSAFNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACV  106 (452)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~  106 (452)
                      ++++...++|.++..+++.......+    +.+++++.+++|.+.++.+++.+.......+++++.|+++||+|||++++
T Consensus         9 ~~~~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~   88 (455)
T TIGR00892         9 GPPPDGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVI   88 (455)
T ss_pred             CCCCCCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHH
Confidence            33344556676666655554433222    56678889999999999999988887777888899999999999999999


Q ss_pred             HHHHHHHHHH-HHhcCccHHHHHH-HHHHHHhHhhhhhhhhhhhhhhhc--ccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 012965          107 TYCLTYILSC-ITKHSPQYKILMI-GRILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILS  182 (452)
Q Consensus       107 ~~~~~~~i~~-l~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~~~i~e~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~  182 (452)
                      .+.++.+++. +++++++++.+++ .|++.|++.+...+.... ++.++  ++|++..+        ....+..+|..++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~-~~~~~~~~~r~~a~g--------~~~~~~~~g~~~~  159 (455)
T TIGR00892        89 AGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLT-MLGKYFYRRRPLANG--------LAMAGSPVFLSTL  159 (455)
T ss_pred             hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHH-HHHHHHHhhHHHHHH--------HHHhcccHHHHHH
Confidence            9998888876 6688899998865 579999999876555544 55555  33444333        2223344555666


Q ss_pred             HhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHhccccccC----CCC-------c-chhH------HHHHHHh-hHHh
Q 012965          183 GLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYG----DPS-------E-SKDL------LTQFRGA-AVAI  243 (452)
Q Consensus       183 ~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~----~~~-------~-~~~~------~~~~~~~-~~~~  243 (452)
                      +.+++.+.+.  ++||+.|.+.+++.++..+......++.+.    +++       + ..+.      .++.++. ..+.
T Consensus       160 ~~l~~~l~~~--~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (455)
T TIGR00892       160 APLNQYLFES--FGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSL  237 (455)
T ss_pred             HHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHH
Confidence            6666666643  467788888776655443332222221110    000       0 0000      0011110 1145


Q ss_pred             hcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHH-
Q 012965          244 ASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIV-  319 (452)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~-  319 (452)
                      +++|+++.......+.....+. ...+.|.|.++ .+.+.   +...+..+++.++++++.+++.||...++.+..... 
T Consensus       238 ~~~~~~~~~~~~~~l~~~~~~~-~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  315 (455)
T TIGR00892       238 FTHRGFLVYLSGNVIMFLGFFA-PIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSF  315 (455)
T ss_pred             hcCchHHHHHHHHHHHHHHccc-hHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHH
Confidence            6778777665555444444333 45677777654 35443   566777788889999999999998432221112222 


Q ss_pred             -HHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          320 -FVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       320 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                       ....++..+........               +...+..++.|++.+...+...+.+.|.+|++++++++|+.+..
T Consensus       316 ~~~~~~l~~ll~~~~~~~---------------~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  377 (455)
T TIGR00892       316 ALLFNGLTHLLCALAGDY---------------TGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIV  377 (455)
T ss_pred             HHHHHHHHHHHHHHhchH---------------HHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHH
Confidence             12222222221111111               34556677888888888898999999999999999999888765

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.95  E-value=4.8e-25  Score=209.92  Aligned_cols=346  Identities=13%  Similarity=0.120  Sum_probs=207.6

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhc
Q 012965           42 YLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH  120 (452)
Q Consensus        42 ~~~~~~~~~~~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~  120 (452)
                      ++...++.........|++|.+.+++|.|..++|++.+...+...+++++.|+++||+|||+++..+.++.+++. .+++
T Consensus        11 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~   90 (381)
T PRK03633         11 LLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGL   90 (381)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444455566899999999999999999999999998888999999999999999999999999998876 6688


Q ss_pred             CccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCc
Q 012965          121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGP  197 (452)
Q Consensus       121 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~  197 (452)
                      ++|++.+++.|+++|++.+...+...+ .+.+.   ++|++..+.    ...+    ..+|..+++.+++.+.+..  .+
T Consensus        91 ~~~~~~l~~~~~l~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~----~~~g~~~g~~~~~~l~~~~--~~  159 (381)
T PRK03633         91 MVGFWSWLAWRFVAGIGCAMIWVVVES-ALMCSGTSRNRGRLLAA----YMMV----YYLGTVLGQLLVSKVSTEL--MS  159 (381)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCHHHHHHHHHH----HHHH----HHHHHHHHHHHHhcccccc--cc
Confidence            999999999999999999988887655 33333   344444332    2223    3345555555555544321  11


Q ss_pred             chhhHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccC
Q 012965          198 VAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPN  277 (452)
Q Consensus       198 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  277 (452)
                      ...+...... .........+.++++++ ++ +      .++.++.+++++++........ ....+.....+.|.|.++
T Consensus       160 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~-~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~lp~~~~~  229 (381)
T PRK03633        160 VLPWVTGLVL-AAILPLLFTRILNQQAE-NH-D------STSIWPMLKLRQARLGVNGCII-SGIVLGSLYGLMPLYLNH  229 (381)
T ss_pred             hHHHHHHHHH-HHHHHHHHhcccCCCCC-CC-C------CCCHHHHHHhcchHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            2222221111 11111122122322111 11 0      0122334566665543222222 222222235567887765


Q ss_pred             CCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhH
Q 012965          278 DEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQ  354 (452)
Q Consensus       278 ~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (452)
                      . +.+.   +.......++.++++...+++.||+++|+  .+..+.....++.....  ...                ..
T Consensus       230 ~-g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~--~l~~~~~~~~~~~~~~~--~~~----------------~~  288 (381)
T PRK03633        230 Q-GMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLL--VLRVQVFVVILGSIAML--SQA----------------AM  288 (381)
T ss_pred             c-CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHH--HHHHHHHHHHHHHHHHh--hhH----------------HH
Confidence            3 4433   56666777889999999999999999886  24434333333332221  111                12


Q ss_pred             HHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh------hhHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Q 012965          355 LLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNVDAFPITVMFGMCSIFLLVASV  428 (452)
Q Consensus       355 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  428 (452)
                      .....+.+.+.....|...+.+.|..|+++++...+..+..      .++.+++++.+..+  ....+...+.+.++...
T Consensus       289 ~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g--~~~~f~~~~~~~l~~~~  366 (381)
T PRK03633        289 APALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS--DNLLFIMIASVSFIYLL  366 (381)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHH
Confidence            23445556665666788999999999988776665553332      45566666666533  44444444444444433


Q ss_pred             HHH
Q 012965          429 LQR  431 (452)
Q Consensus       429 ~~~  431 (452)
                      ...
T Consensus       367 ~~~  369 (381)
T PRK03633        367 MLL  369 (381)
T ss_pred             HHH
Confidence            333

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.95  E-value=2.3e-26  Score=216.79  Aligned_cols=330  Identities=21%  Similarity=0.285  Sum_probs=217.7

Q ss_pred             HHHHHHHhhhhhhhhHH-HHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCc
Q 012965           45 VYSLMMAGDWLQGPYVY-YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSP  122 (452)
Q Consensus        45 ~~~~~~~~~~~~~p~l~-~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~  122 (452)
                      ..++..+......|.+| .+.+++|.|+.+++++.+...+...+.+++.|+++||+|||+++..+.++.+++. +..+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~   83 (352)
T PF07690_consen    4 AFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFAS   83 (352)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhh
Confidence            34455556666688888 7889999999999999999988888999999999999999999999999999884 445668


Q ss_pred             cHHHHHHHHHHHHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhH
Q 012965          123 QYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFD  202 (452)
Q Consensus       123 ~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~  202 (452)
                      |.+.+++.|++.|++.+...+...+ ++.|..+++++....+     ....+..+|..+++.+++.+.+.  ++||..|+
T Consensus        84 ~~~~~~~~~~l~g~~~~~~~~~~~~-~i~~~~~~~~~~~~~~-----~~~~~~~~g~~~g~~l~~~l~~~--~~~~~~~~  155 (352)
T PF07690_consen   84 NFWLLLIARFLLGIGSGFFSPASNA-LIADWFPPEERGRAFG-----ILSAGFSLGSILGPLLGGFLISY--FGWRWAFL  155 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCTCCHHHHHH-----HHHHHHHHHHHHHHHHHHHCCCH--CHHCCHHH
T ss_pred             hHHHHhhhccccccccccccccccc-cccccchhhhhhhccc-----cccchhhhhhhcccchhhhhhhc--cccccccc
Confidence            8889999999999999999998866 8888733322222111     22223446666666777766643  45677788


Q ss_pred             HHHHHHHHHHHHHHhccccccCCCCcc---hh---HHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhcccccc
Q 012965          203 AAACFLAIGMVIILSSWTENYGDPSES---KD---LLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSP  276 (452)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  276 (452)
                      +.+++.++..++.....+++++++++.   ++   .+++..+..+.+++++..+..... .+.....+.....+.|.|.+
T Consensus       156 ~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~  234 (352)
T PF07690_consen  156 ISAILSLIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWILLIA-FFLFFFVFSGFSFFLPLYLQ  234 (352)
T ss_dssp             HHHHHHHHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHH-HHHHHHHHHHHHHHHHHHCC
T ss_pred             cccchhhhhhhhHhhhhhhcccccccccccccccccccccccccccccccchhhhhhhh-hhHHHHHHHHhhcccchhhh
Confidence            888877776654333333332222111   11   111111225566676766522222 22222223335778888876


Q ss_pred             CCCCCc-h---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchh
Q 012965          277 NDEEIP-H---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGS  352 (452)
Q Consensus       277 ~~~~~~-~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (452)
                      +..+.+ .   +.......+...++.++.+++.||+++|+.  .........+............+            ..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------------~~  300 (352)
T PF07690_consen  235 EVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRR--LLIAILLLILGALGLLLLPFSSS------------PV  300 (352)
T ss_dssp             HHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHHCCSHHHCH------------HH
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH--HHHHHHHHHHHHHHHHHHHHhhh------------HH
Confidence            666665 3   455677778888889999999999987663  22222222222222211111100            02


Q ss_pred             hHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhhhh
Q 012965          353 LQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLN  397 (452)
Q Consensus       353 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~  397 (452)
                      .......+.|++.+...+...++..|..|+++|+++.|+.+...+
T Consensus       301 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  345 (352)
T PF07690_consen  301 WLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGS  345 (352)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            445567778889998899999999999999999999999886543

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.95  E-value=7.4e-25  Score=208.50  Aligned_cols=335  Identities=12%  Similarity=0.068  Sum_probs=223.8

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHH-HHH-H-HH
Q 012965           42 YLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTY-ILS-C-IT  118 (452)
Q Consensus        42 ~~~~~~~~~~~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~-~i~-~-l~  118 (452)
                      .....+....+.++..|++|...+|+|.|.+++|.+.+...+...+.++++|+++||+|||+......... .+. . .+
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~   88 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFS   88 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            33444555556677799999999999999999999999988888899999999999999854432222211 121 2 33


Q ss_pred             hcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCc
Q 012965          119 KHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGP  197 (452)
Q Consensus       119 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~  197 (452)
                      ..+++++.+++.|.++|.+.+...|...+ +..|+ ++|++..+..+.        +..+|..+++.+++.+.++.  +|
T Consensus        89 ~~~~~~~~l~~~~~l~~~~~~~~~p~~~a-l~~~~~~~~~~~~g~~~~--------~~slG~~~g~~l~g~l~~~~--g~  157 (382)
T TIGR00902        89 AGAHNAWLLFIAIGLFALFFSAGMPIGDA-LANTWQKQFGLDYGKVRL--------IGSAAFIIGSALFGGLIGMF--DE  157 (382)
T ss_pred             HhhhhHHHHHHHHHHHHHHHccchhHHHH-HHHHHHHHcCCCccHHHH--------HHHHHHHHHHHHHHHHHHHc--Ch
Confidence            56889999999999999998888888766 55554 555665553322        23366677777777777554  55


Q ss_pred             chhhHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccC
Q 012965          198 VAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPN  277 (452)
Q Consensus       198 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  277 (452)
                      |..|.+......+... .....|+.+++++++++. ++..++.++++|+|+++.......+....... ...+.|.+.++
T Consensus       158 ~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~-~~~~~~~~l~~  234 (382)
T TIGR00902       158 QNILAILTAGLAFMLI-GFLIKPTIPPKDAIPEDE-SQGDSAFIALLKNPMNLRFLAAVCLIQGAHAA-YYGFSAIYWQA  234 (382)
T ss_pred             hHHHHHHHHHHHHHHH-HHHcCCCCCCCccccccc-cccchhHHHHHcChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            6667665444332222 221222211111111111 11123355778899988887766666655444 46677888765


Q ss_pred             CCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhH
Q 012965          278 DEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQ  354 (452)
Q Consensus       278 ~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (452)
                       .|.+.   |..+....++.+++..+.+++.||+|+|+  .+..+.....+...........               +..
T Consensus       235 -~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~--~l~~~~~~~~~~~~~~~~~~~~---------------~~~  296 (382)
T TIGR00902       235 -AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARD--LLLISAIACVGRWAIIGAIEAF---------------PLI  296 (382)
T ss_pred             -CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHH--HHHHHHHHHHHHHHHHHhHhhH---------------HHH
Confidence             55554   56667777888999999999999999877  3555555555554444332222               356


Q ss_pred             HHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhh-h------hhHHHHHHHhcccc
Q 012965          355 LLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRI-P------LNIFVCVVLYNVDA  409 (452)
Q Consensus       355 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~-~------~~~~~~~~l~~~~~  409 (452)
                      +....+.++.++...+....++++. |+++|+++.++++. .      .+..+++.+.+..+
T Consensus       297 ~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g  357 (382)
T TIGR00902       297 FLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG  357 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            7778999999999999999999998 99999988888663 2      24566777777643

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.94  E-value=1.8e-24  Score=212.72  Aligned_cols=341  Identities=14%  Similarity=0.083  Sum_probs=199.7

Q ss_pred             cchhhHHHHHHHHHHHHhhhhh----hhhHHHHHhhc--------CCCcchhHHHHHHHHhhhhhccccccccccccCcc
Q 012965           35 FNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTY--------GFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRK  102 (452)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~----~p~l~~i~~~~--------g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr  102 (452)
                      .++++++..+...+..+.++++    ++..|.+.+++        +.++.+.+++.+...++..++++++|+++||+|||
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr   85 (479)
T PRK10077          6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR   85 (479)
T ss_pred             cchHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            3445666666666666666666    56666677666        88889999998988888889999999999999999


Q ss_pred             hHHHHHHHHHHHHH-HHhcC------------ccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHH
Q 012965          103 RACVTYCLTYILSC-ITKHS------------PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSIT  166 (452)
Q Consensus       103 ~~l~~~~~~~~i~~-l~~~~------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~  166 (452)
                      +++..+..+++++. .+++.            ++++.++++|+++|++.|...+...+ +++|+   ++|++..+.    
T Consensus        86 ~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~-~i~e~~~~~~rg~~~~~----  160 (479)
T PRK10077         86 DSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPM-YIAEIAPAHIRGKLVSF----  160 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHH-HHHhhCChhhhhHHHHH----
Confidence            99999999988765 44432            22567889999999999999998866 88888   345554443    


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhh--cccCCCcchhhHHHHHHHHHHHHHHHhccccccCC---CCcchh---HHH----
Q 012965          167 FSKAIFLGNGLVAILSGLFGNLLV--DSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGD---PSESKD---LLT----  234 (452)
Q Consensus       167 ~~~~~~~g~~ig~~~~~~l~~~l~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~----  234 (452)
                      .+.+..+|..+++.++..+.....  ....++||++|.+.++..++..+.. ...||+++.   +++.++   ..+    
T Consensus       161 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~-~~l~~s~~~l~~~~~~~~~~~~~~~~~~  239 (479)
T PRK10077        161 NQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLL-YFVPETPRYLMSRGKQEQAEGILRKIMG  239 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHH-HcCCCCcHHHHHcCCHHHHHHHHHHHcC
Confidence            333333333333333222211000  0124678888888776666554433 356765421   111110   000    


Q ss_pred             -----HHHHhhHHhhc-----chhHHHH---HH-----HHHhhhchhhhhhhhhccccccCCCCCc---hHHHHHHHHHH
Q 012965          235 -----QFRGAAVAIAS-----DEKIALL---GA-----IQSLFEGSMYTFVFLWTPALSPNDEEIP---HGFIFATFMLA  293 (452)
Q Consensus       235 -----~~~~~~~~~~~-----~~~~~~~---~~-----~~~~~~~~~~~~~~~~~p~~~~~~~~~~---~~~~~~~~~i~  293 (452)
                           +..++.++..+     .++.+..   ..     ...+.+...+....++.|.+.++ .+.+   ........++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~  318 (479)
T PRK10077        240 NTLATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT-LGASTDIALLQTIIVGVI  318 (479)
T ss_pred             ChhHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-cCCCCchHHHHHHHHHHH
Confidence                 00001111111     1111100   00     01111111122234455665443 3332   23444556678


Q ss_pred             HHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchh-hHH
Q 012965          294 SMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFW-PSI  372 (452)
Q Consensus       294 ~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~  372 (452)
                      .+++.++.++++||+|||+  .+..+..+..+.............        ..   .....+.++++.+.+..+ |..
T Consensus       319 ~~i~~~~~g~l~dr~g~r~--~~i~~~~~~~v~~~~l~~~~~~~~--------~~---~~~~~~~~~~~~~~~~~~~~~~  385 (479)
T PRK10077        319 NLTFTVLAIMTVDKFGRKP--LQIIGALGMAIGMFSLGTAFYTQA--------PG---IVALLSMLFYVAAFAMSWGPVC  385 (479)
T ss_pred             HHHHHHHHHHHHHHhcChH--HHHHhHHHHHHHHHHHHHHHhcCc--------cc---HHHHHHHHHHHHHHhccccchh
Confidence            8899999999999999887  344444444444433322221100        00   123334455555555433 778


Q ss_pred             HHHHhhcCCcccccchhhhhhhh
Q 012965          373 MKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       373 ~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      +.+++|.+|++.|+++.|+.+..
T Consensus       386 ~~~~~e~~p~~~r~~~~g~~~~~  408 (479)
T PRK10077        386 WVLLSEIFPNAIRGKALAIAVAA  408 (479)
T ss_pred             HHHhHhhCChhHHHHHHHHHHHH
Confidence            99999999999999999987664

>PRK10054 putative transporter; Provisional

Probab=99.94  E-value=1e-24  Score=208.06  Aligned_cols=356  Identities=14%  Similarity=0.080  Sum_probs=222.0

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhHHHHH-hhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-
Q 012965           39 KNNYLLVYSLMMAGDWLQGPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-  116 (452)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~p~l~~i~-~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-  116 (452)
                      .+.++...++...+.+...|+++... +++|+|..++|++.+...+.+.+.+++.|+++||+|||+++..+.++.+++. 
T Consensus         9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~   88 (395)
T PRK10054          9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFI   88 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHH
Confidence            34444555555666667678776554 6899999999999998888888899999999999999999999998888876 


Q ss_pred             HHhcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 012965          117 ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSF  193 (452)
Q Consensus       117 l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~  193 (452)
                      +.+++++++.+++.|.+.|.+.+...+...+ +..|.   ++|++..+.    ....    ..+|..++|.+++.+.+  
T Consensus        89 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~----~~~~----~~lg~~igp~l~~~l~~--  157 (395)
T PRK10054         89 AIPLVNNVTLVVLFFALINCAYSVFSTVLKA-WFADNLSSTSKTKIFSL----NYTM----LNIGWTVGPPLGTLLVM--  157 (395)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCHhHHHHHHHH----HHHH----HHHHHHHHHHHHHHHHH--
Confidence            5688999999999999998887777666655 55654   233443332    2222    23455555566665543  


Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccc
Q 012965          194 SLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPA  273 (452)
Q Consensus       194 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  273 (452)
                       ++|+.+|...+++.++..+......||++++++++++  +  ..+.++.+|+|+++.......+....... ...+.+.
T Consensus       158 -~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~  231 (395)
T PRK10054        158 -QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATETG--S--VWSPSVLLQDKALLWFTCSGFLASFVSGA-FASCISQ  231 (395)
T ss_pred             -hccCcHHHHHHHHHHHHHHHHHHHHhccccccccchh--h--hhhhhhhccCceehHHHHHHHHHHHHHHH-hhhhHHH
Confidence             3567788877766665544443334444322221111  1  11225667888887766554444333222 2233444


Q ss_pred             ccc--CCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcc
Q 012965          274 LSP--NDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGIS  348 (452)
Q Consensus       274 ~~~--~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (452)
                      +..  ++.+.+.   +.......+.........+++.||.++|+  .+..+..+..+...........            
T Consensus       232 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~------------  297 (395)
T PRK10054        232 YVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRP--LMTAGTLCFVIGLVGFIFSGNS------------  297 (395)
T ss_pred             HHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchh--HHHHHHHHHHHHHHHHHHcchH------------
Confidence            432  2223322   44555555556666778899999998877  2444444444443333221111            


Q ss_pred             cchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhh-----hhhHHHHHHHhccccCCchHHHHHHHHHH
Q 012965          349 FSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRI-----PLNIFVCVVLYNVDAFPITVMFGMCSIFL  423 (452)
Q Consensus       349 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  423 (452)
                        .+...+...+.+++.+...|...+.+.+..|++.|++..+..+.     ..++..++.+.+..  ++...+.+.+...
T Consensus       298 --~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~Gp~~~G~l~~~~--g~~~~~~~~~~~~  373 (395)
T PRK10054        298 --LLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQSLGWLGAAINPLVSGVILTTL--PPWSLFVILALAI  373 (395)
T ss_pred             --HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHHHHHHHHHHHHHHHHHHHHHc--ChhhHHHHHHHHH
Confidence              02345566788888887778889999999999999998775543     24556667777763  4444444444444


Q ss_pred             HHHHHH
Q 012965          424 LVASVL  429 (452)
Q Consensus       424 ~~~~~~  429 (452)
                      .+..++
T Consensus       374 ~~~~~~  379 (395)
T PRK10054        374 VAAWLL  379 (395)
T ss_pred             HHHHHH
Confidence            433333

>PRK11043 putative transporter; Provisional

Probab=99.94  E-value=4.4e-24  Score=204.90  Aligned_cols=315  Identities=13%  Similarity=0.119  Sum_probs=204.7

Q ss_pred             hhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHH
Q 012965           52 GDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIG  130 (452)
Q Consensus        52 ~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~  130 (452)
                      ......|.+|.+.+++|.++++.++..+...+...+++++.|+++||+|||+++..+..+.+++. ++.++++++.+++.
T Consensus        21 ~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  100 (401)
T PRK11043         21 ATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVL  100 (401)
T ss_pred             HHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            44444788888899999999999999998888888899999999999999999999998888876 66889999999999


Q ss_pred             HHHHHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHH
Q 012965          131 RILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAI  210 (452)
Q Consensus       131 r~l~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~  210 (452)
                      |+++|++.+...+...+ ++.|..++++..+..+..     .....++..+++.+++.+.+.  ++||..|.+.+...++
T Consensus       101 ~~l~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~i~~~l~~~--~g~~~~~~~~~~~~~~  172 (401)
T PRK11043        101 RFVQAVGVCSAAVIWQA-LVIDRYPAQKANRVFATI-----MPLVALSPALAPLLGAWLLNH--FGWQAIFATLFAITLL  172 (401)
T ss_pred             HHHHHhhhHHHHHHHHH-HHHHhcCcHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHH
Confidence            99999998877766545 677764444333322221     122335556666777766654  4567778776666655


Q ss_pred             HHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HHHH
Q 012965          211 GMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIF  287 (452)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~  287 (452)
                      ..+... ..+|+++++++ +    +.+++.++.+|+++.+.............+. ...+.|.+.++ .+.+.   +...
T Consensus       173 ~~~~~~-~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~-~g~s~~~~g~~~  244 (401)
T PRK11043        173 LILPTL-RLKPSKKARKQ-S----QDALTFKQLLKSKTYLGNVLIFAACSAAFFA-WLTGSPFILEQ-MGYSPADIGLSY  244 (401)
T ss_pred             HHHHHH-HcCCCCCcccc-c----hHHHHHHHHHcChhHHHHHHHHHHHHHHHHH-HHHHhHHHHHH-cCCCHHHHHHHH
Confidence            544443 33443322211 1    1123455667777776554444333333333 35667777654 45544   4555


Q ss_pred             HHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhc
Q 012965          288 ATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGI  367 (452)
Q Consensus       288 ~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  367 (452)
                      ....++..++....+++.||+++|+.  .........+.............      ++.    +.......+.+++.+.
T Consensus       245 ~~~~~~~~~g~~~~~~l~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~~  312 (401)
T PRK11043        245 VPQTIAFLVGGYGCRAALQKWGGEQL--LPWLLVLFAVSVIAIWLASLLSH------PSL----VPLLIPFCVMAAANGA  312 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHH--HHHHHHHHHHHHHHHHHHHHhcc------CcH----HHHHHHHHHHHHHHHH
Confidence            55667788899999999999987763  22222222222222111111100      000    2344556677888888


Q ss_pred             hhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          368 FWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       368 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      .+|...+...|..|+ +++++.|+.+..
T Consensus       313 ~~~~~~~~~~~~~~~-~~g~~~g~~~~~  339 (401)
T PRK11043        313 IYPIVVAQALRPFPQ-ATGKAAALQNTL  339 (401)
T ss_pred             HHHHHHHHHhhhCcc-cChHHHHHHHHH
Confidence            888888888887765 689998887764

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.94  E-value=1.7e-24  Score=204.96  Aligned_cols=300  Identities=13%  Similarity=0.036  Sum_probs=192.1

Q ss_pred             hhhHHHHHh-hcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcC-----ccHHHHHH
Q 012965           57 GPYVYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS-----PQYKILMI  129 (452)
Q Consensus        57 ~p~l~~i~~-~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~-----~~~~~l~~  129 (452)
                      +|..+.+.+ |+|+|++|.+++.+...+.+.+..++.|++.||+|.|+++..+.++.++.. +++++     ++++.+++
T Consensus        54 ~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli  133 (462)
T PRK15034         54 SAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIV  133 (462)
T ss_pred             HHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHH
Confidence            777777766 899999999999998888888888889999999999999999999998865 55665     89999999


Q ss_pred             HHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhcccC-----------
Q 012965          130 GRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL-LVDSFS-----------  194 (452)
Q Consensus       130 ~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~-l~~~~~-----------  194 (452)
                      .|++.|++ +..++.... .++++   ++|++..+...    ...+.|..++..+.|.+... +.+..+           
T Consensus       134 ~r~l~Gig-g~~f~~~~~-~vs~wfp~~~rG~A~Gi~~----g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~  207 (462)
T PRK15034        134 IALLCGFA-GANFASSMG-NISFFFPKAKQGSALGING----GLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSV  207 (462)
T ss_pred             HHHHHHHH-HHhHHHHHH-HHHHHCCHhHhHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccch
Confidence            99999998 556677656 67776   44666555433    23344555555555554321 111111           


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhcccc
Q 012965          195 LGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPAL  274 (452)
Q Consensus       195 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  274 (452)
                      .+|+..+.+..++.++..++.++..++.+++ +  . .    .++..+.+|+|+.|..++...+....+.. ...+.|.|
T Consensus       208 ~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~-~--~-~----~~~~~~vlk~~~~Wllslly~~tFG~fvg-~s~~lp~~  278 (462)
T PRK15034        208 MSLANAAWIWVPLLAIATIAAWSGMNDIASS-R--A-S----IADQLPVLQRLHLWLLSLLYLATFGSFIG-FSAGFAML  278 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCcccc-c--c-C----HHHHHHHhCCCchhHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            2255555555555544444444333332211 1  1 1    22344578999999998888776666554 47789988


Q ss_pred             ccCCCCCchH-HHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhh
Q 012965          275 SPNDEEIPHG-FIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSL  353 (452)
Q Consensus       275 ~~~~~~~~~~-~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (452)
                      .++.++.... .......+...+.++++|+++||+|+++.  +..+.....+........ ....    ++.+    .+.
T Consensus       279 ~~~~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~v--l~~~~i~~~i~~~~~~l~-lp~~----~~~~----~~~  347 (462)
T PRK15034        279 AKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRV--TLINFIFMAIFSALLFLT-LPGT----GSGN----FIA  347 (462)
T ss_pred             HHHHcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHH--HHHHHHHHHHHHHHHHHH-hccc----cccH----HHH
Confidence            8776543222 22333457788889999999999998873  444443333332221111 1100    0011    124


Q ss_pred             HHHHHHHHHHHhhchhhHHHHHHhhcCCc
Q 012965          354 QLLGFCTFEACVGIFWPSIMKMRSQYIPE  382 (452)
Q Consensus       354 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~  382 (452)
                      ....++...++.|..+...+-++.+.+|+
T Consensus       348 ~~~~~~~l~~~~G~gngsvfk~ip~~f~~  376 (462)
T PRK15034        348 FYAVFMGLFLTAGLGSGSTFQMIAVIFRQ  376 (462)
T ss_pred             HHHHHHHHHHHhcccchHHHHhhHHHHhh
Confidence            44555555566677777777788887774

>TIGR00897 2A0118 polyol permease family

Probab=99.94  E-value=3.1e-24  Score=205.71  Aligned_cols=362  Identities=11%  Similarity=0.122  Sum_probs=213.6

Q ss_pred             chhhHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHH
Q 012965           36 NSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILS  115 (452)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~  115 (452)
                      +|......+...+...+++...++++.+.+|+|.|+++.|++.+...+...+++++.|+++||+||||++..+..+.+++
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~   91 (402)
T TIGR00897        12 PLNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVG   91 (402)
T ss_pred             CchhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            33333445555566667777777777888999999999999988888888899999999999999999999999988876


Q ss_pred             H-HH---hc-CccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHH-HHHHhhh
Q 012965          116 C-IT---KH-SPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVA-ILSGLFG  186 (452)
Q Consensus       116 ~-l~---~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~-~~~~~l~  186 (452)
                      . ++   +. .++++.+++.|+++|++.+...+.... .+.+.   ++|++..+..+..        ..+|. .+++.++
T Consensus        92 ~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~-~~~~~~~~~~~g~~~g~~~~~--------~~~g~~~~g~~~~  162 (402)
T TIGR00897        92 HAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLV-WVVYNTKQDNLSSAVGWFWAV--------YSIGIGVFGSYYS  162 (402)
T ss_pred             HHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHH-HHHHhCCHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence            4 32   33 368889999999999998877666545 44443   5556655533322        23333 3455566


Q ss_pred             hhhhcccCCCcchhhHHHHHHHHHHHHHHHhccccccCCC-CcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhh
Q 012965          187 NLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDP-SESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYT  265 (452)
Q Consensus       187 ~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (452)
                      +.+.+..+|  +..++.......+...+.....++.++++ +++++..++..+..+.++|+|+++.......+.....+.
T Consensus       163 ~~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (402)
T TIGR00897       163 SYAIPAFGE--MNTLWSALAFVLTGGVIALFSNKDIFTPQHMQTREKFSELGKAATILFTNPNVLLGGMVRIINTIGLFG  240 (402)
T ss_pred             Hhcccccch--HHHHHHHHHHHHHHHHHHHhccCCCCCcccccCCcchhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHH
Confidence            665544443  22222222111111112221222221111 111111222334456778888888776665554444444


Q ss_pred             hhhhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 012965          266 FVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNV  342 (452)
Q Consensus       266 ~~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (452)
                       ...|.|.|.++ .+.+.   +.......+++.++++..|+++||++||+. ..........+.............+   
T Consensus       241 -~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~-~~~~~~l~~~~~~~~l~~~~~~~~~---  314 (402)
T TIGR00897       241 -FAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNT-VRWFGGVGCGIFTLALYYIPQHFGH---  314 (402)
T ss_pred             -HHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH-HHHHHHHHHHHHHHHHHHHHHccCC---
Confidence             47788888764 55544   455566678899999999999999998773 1111222222222222111111000   


Q ss_pred             CCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhhh------hHHHHHHHhccccCCchHHH
Q 012965          343 KSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPL------NIFVCVVLYNVDAFPITVMF  416 (452)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~------~~~~~~~l~~~~~~~~~~~~  416 (452)
                         +    .+...+..++.|++.+...+ ......|..| ++|++++|+.+...      ++.+++.+.+..  +....+
T Consensus       315 ---~----~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~--g~~~~~  383 (402)
T TIGR00897       315 ---S----FAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFF--GAIGVV  383 (402)
T ss_pred             ---c----HHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--chHHHH
Confidence               0    12344556666776665444 3455667655 57999999888752      334555555553  444444


Q ss_pred             HHHHHHHHH
Q 012965          417 GMCSIFLLV  425 (452)
Q Consensus       417 ~~~~~~~~~  425 (452)
                      ..++++.++
T Consensus       384 ~~~a~~~~i  392 (402)
T TIGR00897       384 WIFAALYVV  392 (402)
T ss_pred             HHHHHHHHH
Confidence            444444433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.94  E-value=3.9e-25  Score=217.82  Aligned_cols=319  Identities=15%  Similarity=0.130  Sum_probs=216.8

Q ss_pred             hhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHH
Q 012965           52 GDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIG  130 (452)
Q Consensus        52 ~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~  130 (452)
                      ......+.+|.+.+++|.+..+.+++.+...+...++.++.|+++||+|||+++..+.++..++. ++++++|++.+++.
T Consensus        17 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   96 (485)
T TIGR00711        17 DSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIF   96 (485)
T ss_pred             HHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            34444788899999999999999999888888888888999999999999999999999999876 77899999999999


Q ss_pred             HHHHHhHhhhhhhhhhhhhhhhcc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHH
Q 012965          131 RILGGIATSLLFSAFESWLVAEHN---KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACF  207 (452)
Q Consensus       131 r~l~G~~~~~~~~~~~~~~i~e~~---~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~  207 (452)
                      |+++|++.+...+...+ ++.|..   +|++..+.        ...+..+|..+++.+++.+.++  ++||+.|++.+.+
T Consensus        97 ~~~~G~~~~~~~~~~~~-~i~~~~~~~~r~~~~~~--------~~~~~~~g~~~g~~~~~~l~~~--~~w~~~f~~~~~~  165 (485)
T TIGR00711        97 RVIQGFGGGPLIPLSFS-TLLNIYPPEKRGRAMAI--------WGLTVLVAPALGPTLGGWIIEN--YHWRWIFLINVPI  165 (485)
T ss_pred             HHHHHhhhhhHHHHHHH-HHHHHCCHHHHHHHHHH--------HHHHHHHHhhhhhccHhHhccC--cCceehhhhhhHH
Confidence            99999999998888766 777773   33333332        2234456667777777777754  4566677776665


Q ss_pred             HHHHHHHHHhccccccCCCCcchhHH----------------------------------------------HHHHH---
Q 012965          208 LAIGMVIILSSWTENYGDPSESKDLL----------------------------------------------TQFRG---  238 (452)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~~---  238 (452)
                      .++.........||++++++++.+..                                              ++.++   
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (485)
T TIGR00711       166 GIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNP  245 (485)
T ss_pred             HHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            55554444434454332211110000                                              00000   


Q ss_pred             -hhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchh
Q 012965          239 -AAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVES  314 (452)
Q Consensus       239 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~  314 (452)
                       ...+.+++++++.......+.....+. ...+.|.|+++..+.++   +.......++.+++.++.+++.||++||+  
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~--  322 (485)
T TIGR00711       246 LVDLRLFKYRNFTIGCVYMSLLGLGLYG-SFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRK--  322 (485)
T ss_pred             ccCHHHHcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHH--
Confidence             011345666666665555544444443 46778888877666654   56667777889999999999999999877  


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhh
Q 012965          315 YMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRI  394 (452)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~  394 (452)
                      .+..+..+..+........... +      .+    .+.......+.|++.+...+.......+..|+++|+++.|+.+.
T Consensus       323 ~~~~g~~~~~~~~~~~~~~~~~-~------~~----~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  391 (485)
T TIGR00711       323 LVTIGLILYAVGFYWRAFTFTP-D------TP----FLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNF  391 (485)
T ss_pred             HHHHHHHHHHHHHHHHhccCCC-C------CC----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHH
Confidence            2444444443333332211111 0      00    12345557788888888887777888888999999999988776


Q ss_pred             h
Q 012965          395 P  395 (452)
Q Consensus       395 ~  395 (452)
                      .
T Consensus       392 ~  392 (485)
T TIGR00711       392 T  392 (485)
T ss_pred             H
Confidence            4

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.94  E-value=1.7e-24  Score=213.24  Aligned_cols=344  Identities=12%  Similarity=-0.026  Sum_probs=198.8

Q ss_pred             CCCccchhhHHHHHHHHHHHHhhhhh----hhhHHHHHhhc-----CCCcchhHHHHHHHHhhhhhccccccccccccCc
Q 012965           31 TSSAFNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTY-----GFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGR  101 (452)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~l~~i~~~~-----g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Gr  101 (452)
                      ++.++.++++..+.++.+..+.++++    +...|.+.+++     +.+..+.+++.+...+...+++++.|+++||+||
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Gr   85 (502)
T TIGR00887         6 DTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGR   85 (502)
T ss_pred             hccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            44567778888887778887877777    44455544432     3445566777777777777888999999999999


Q ss_pred             chHHHHHHHHHHHHH-HHhcCcc------HHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHH
Q 012965          102 KRACVTYCLTYILSC-ITKHSPQ------YKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAI  171 (452)
Q Consensus       102 r~~l~~~~~~~~i~~-l~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~  171 (452)
                      |+++..+.++..++. +++++++      ++.++++|+++|++.|...+.... ++.|.   ++|++..+....    ..
T Consensus        86 r~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~-~~~e~~p~~~Rg~~~~~~~~----~~  160 (502)
T TIGR00887        86 KRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAI-ITSEFATKKWRGAMMAAVFA----MQ  160 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhcChhhHHHHHHHHHH----HH
Confidence            999999999998875 5566655      789999999999999999888855 88888   445554443333    33


Q ss_pred             HHHHHHHHHHHHhhhhhhhc-----------------ccCCCcchhhHHHHHHHHHHHHHHHhccccccC------CCCc
Q 012965          172 FLGNGLVAILSGLFGNLLVD-----------------SFSLGPVAPFDAAACFLAIGMVIILSSWTENYG------DPSE  228 (452)
Q Consensus       172 ~~g~~ig~~~~~~l~~~l~~-----------------~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~  228 (452)
                      .+|..+|+.++..+.....+                 ..+|+||.++.+.++..++..+.. +..||+++      ++++
T Consensus       161 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~-~~lpESpr~l~~~~~~~~  239 (502)
T TIGR00887       161 GFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFR-LTIPETPRYTADVAKDVE  239 (502)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHhCcchH
Confidence            34444444444333221110                 124689999977766655544443 36677532      1111


Q ss_pred             -chhHHH----------------------HHHHhhHHhhcc---hhHHHH---HHHHHhhhchhhhhhhhhccccccCCC
Q 012965          229 -SKDLLT----------------------QFRGAAVAIASD---EKIALL---GAIQSLFEGSMYTFVFLWTPALSPNDE  279 (452)
Q Consensus       229 -~~~~~~----------------------~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~p~~~~~~~  279 (452)
                       +.+..+                      +.+..+++++++   ++.+..   .....+.....+.....|.|.++++ .
T Consensus       240 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~  318 (502)
T TIGR00887       240 QAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-I  318 (502)
T ss_pred             HHHHHHHHHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-H
Confidence             000000                      001123334331   121111   1111122222222245667776642 2


Q ss_pred             CCch---H-----------H-HHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCC
Q 012965          280 EIPH---G-----------F-IFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKS  344 (452)
Q Consensus       280 ~~~~---~-----------~-~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (452)
                      |.+.   +           . ......++.+++.++.++++||+|||+.  +..+..+.++++........... .    
T Consensus       319 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~--l~~~~~~~~~~~~~l~~~~~~~~-~----  391 (502)
T TIGR00887       319 GYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPI--QLMGFFILTVLFFVLGFAYNHLS-T----  391 (502)
T ss_pred             cCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhH--HHHHHHHHHHHHHHHHHHHHhcc-h----
Confidence            2211   0           0 1223335667788999999999999983  44444444444433332221100 0    


Q ss_pred             CCcccchhhHHHHHHHHHHH-hhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          345 GGISFSGSLQLLGFCTFEAC-VGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       345 ~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                         .    .......+.... .....+..+.+..|.+|++.|+++.|+.+..
T Consensus       392 ---~----~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~  436 (502)
T TIGR00887       392 ---H----GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAAS  436 (502)
T ss_pred             ---h----HHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHH
Confidence               0    111111121222 2224467788899999999999999987764

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.94  E-value=7.5e-24  Score=205.46  Aligned_cols=357  Identities=18%  Similarity=0.199  Sum_probs=239.0

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHH-H-H--
Q 012965           42 YLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILS-C-I--  117 (452)
Q Consensus        42 ~~~~~~~~~~~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~-~-l--  117 (452)
                      +.....+..++++++...++-+..+..-|+..++.+.....+...+.++++|.++||++|||+++.+.++.++. . +  
T Consensus        15 lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~   94 (524)
T PF05977_consen   15 LWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAV   94 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH
Confidence            45556777888888855555566667778889999999999999999999999999999999999998877653 2 2  


Q ss_pred             Hhc--CccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCC
Q 012965          118 TKH--SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSL  195 (452)
Q Consensus       118 ~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~  195 (452)
                      ...  ..+.+.+++.-++.|++.+...|+.++ ++.|.-+|+...... ...+...++...+||.+++.+...    .  
T Consensus        95 l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A-~ip~lV~~~~L~~A~-al~s~~~niar~iGPalgG~Lva~----~--  166 (524)
T PF05977_consen   95 LAFFGLLSPWLLLILTFLLGIGSAFFNPAWQA-IIPELVPKEDLPAAN-ALNSISFNIARIIGPALGGILVAF----F--  166 (524)
T ss_pred             HHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccHhhHHHHH-HHHHHHHHHHHhccchHHHHHHHH----H--
Confidence            122  357889999999999999999999877 888774444433322 234444455555555554444332    2  


Q ss_pred             CcchhhHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccc
Q 012965          196 GPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALS  275 (452)
Q Consensus       196 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  275 (452)
                      +-...|.+.++..++....+....++.++++.++++..++.++..+.+.++|..........++...... ....+|.+.
T Consensus       167 G~~~~f~inalsfl~~i~~l~~~~~~~~~~~~~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a-~~aLlPl~a  245 (524)
T PF05977_consen  167 GAAAAFLINALSFLISILALLRWKPPPPPSSLPRERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASA-VWALLPLFA  245 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccccccccccchhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhH-HHHhhhHHH
Confidence            3345677666655554444332222222223333445566677777777777766554433333333222 345678887


Q ss_pred             cCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchh
Q 012965          276 PNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGS  352 (452)
Q Consensus       276 ~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (452)
                      ++..+.++   |.+.+..+++.++|.++.+++.+|+++++  .+..+....++......+....               +
T Consensus       246 ~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~--lv~~~~~~~a~~~~~lal~~~~---------------~  308 (524)
T PF05977_consen  246 RDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRR--LVLLASLLFALALLLLALSPSF---------------W  308 (524)
T ss_pred             HHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcch--hhHHHHHHHHHHHHHHhcchHH---------------H
Confidence            76666544   78888999999999999999999987766  3445555555544444433333               4


Q ss_pred             hHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh------hhHHHHHHHhccccCCchHHHHHHHHHHHHH
Q 012965          353 LQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNVDAFPITVMFGMCSIFLLVA  426 (452)
Q Consensus       353 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  426 (452)
                      ...+..++.|++.........+..++..|++.||+++|++++.      .+..+.+.+.+.  .+....+.++++..++.
T Consensus       309 ~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~--~g~~~al~~a~~~lll~  386 (524)
T PF05977_consen  309 LALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH--FGVRTALLIAGAALLLS  386 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHH
Confidence            6677788888888888888999999999999999999988764      334555555555  34444444444443333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00895 2A0115 benzoate transport

Probab=99.94  E-value=1.5e-24  Score=208.00  Aligned_cols=330  Identities=20%  Similarity=0.205  Sum_probs=207.5

Q ss_pred             chhhHHHHHHHHHHHHhhhhh----hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHH
Q 012965           36 NSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLT  111 (452)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~----~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~  111 (452)
                      ++.++..+..+....+.++++    .+..|.+.+++|.++.+.+++.+...+...+++++.|+++||+|||+.+..+..+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~   91 (398)
T TIGR00895        12 SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL   91 (398)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence            344555444444444433332    6677888899999999999998888887888889999999999999999999988


Q ss_pred             HHHHH-HHhcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012965          112 YILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGN  187 (452)
Q Consensus       112 ~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~  187 (452)
                      .+++. +..++++++.+++.|++.|++.+...+...+ ++.|.   ++|++..+..    .    .+..+|..+++.+++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~----~----~~~~~g~~~~~~~~~  162 (398)
T TIGR00895        92 FSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNA-LVSEYAPKRFRGTAVGLM----F----CGYPIGAAVGGFLAG  162 (398)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHH-HHHHHcCHHhhchhHhhH----h----hHHHHHHHHHHHHHH
Confidence            88876 6688899999999999999999998888766 77776   3455544422    2    233455555556666


Q ss_pred             hhhcccCCCcchhhHHHHHHHHHHHHHHHhccccccCC---C--Ccc----------------------hhHHHHHHHhh
Q 012965          188 LLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGD---P--SES----------------------KDLLTQFRGAA  240 (452)
Q Consensus       188 ~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~----------------------~~~~~~~~~~~  240 (452)
                      .+.+.  ++|+..+.+.+.+..+.........||+++.   +  ++.                      ++..++.++..
T Consensus       163 ~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (398)
T TIGR00895       163 WLIPV--FGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVF  240 (398)
T ss_pred             HHhhc--ccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHH
Confidence            65544  3556667666544444433333344443210   0  000                      00000001111


Q ss_pred             HHhhcc---hhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchh
Q 012965          241 VAIASD---EKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVES  314 (452)
Q Consensus       241 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~  314 (452)
                      +..+++   ++.+.......+.... +.....|.|.+.+ ..+.+.   +.......++.+++.++.+++.||+++|+  
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--  316 (398)
T TIGR00895       241 KALFQGKTARITVLLWLLYFMLLVG-VYFLTNWLPKLMV-ELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRV--  316 (398)
T ss_pred             HHHhcchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH--
Confidence            112222   2222222222222222 3334667774443 334433   56667778889999999999999999874  


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhh
Q 012965          315 YMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRI  394 (452)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~  394 (452)
                       ......+.++...........              .+......++.+++.+...+..+++..|.+|++.|+++.|+.+.
T Consensus       317 -~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  381 (398)
T TIGR00895       317 -TALLLLLGAVFAVLVGSTLFS--------------PTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIG  381 (398)
T ss_pred             -HHHHHHHHHHHHHHHHHHhhC--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence             333333333333222221111              02456667788888888889999999999999999999988776


Q ss_pred             h
Q 012965          395 P  395 (452)
Q Consensus       395 ~  395 (452)
                      .
T Consensus       382 ~  382 (398)
T TIGR00895       382 I  382 (398)
T ss_pred             H
Confidence            4

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.94  E-value=6.4e-24  Score=205.79  Aligned_cols=334  Identities=13%  Similarity=0.081  Sum_probs=194.2

Q ss_pred             hhHHHHHHHHHHHHhhhhh----hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHH
Q 012965           38 FKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYI  113 (452)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~----~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~  113 (452)
                      .++..+....+.......+    ....|.+. +.|+|+++.++..+...+...++.++.|+++||+|||+++..+.++.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~  102 (438)
T TIGR00712        24 LRWQVFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSA  102 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHhhhHHHH-HcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHH
Confidence            3344444444444443332    23344444 469999999999999888888999999999999999999999988888


Q ss_pred             HHH-HHhcC----ccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012965          114 LSC-ITKHS----PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLF  185 (452)
Q Consensus       114 i~~-l~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l  185 (452)
                      ++. +++..    ++++.+.+.|++.|++.+...+.... .+.|+   ++|++..+.    .+..    ..+|..+++.+
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~-~i~~~~~~~~rg~~~~~----~~~~----~~~g~~~~~~l  173 (438)
T TIGR00712       103 AVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGR-TMVHWWSQSERGTIVSI----WNCA----HNIGGGIPPLL  173 (438)
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHH-HHHHhcCcccchhHHHH----HHHH----HHhHhHHHHHH
Confidence            875 44443    56778889999999999988777655 66666   344554442    2222    33444444444


Q ss_pred             hhhhhcccCCCcchhhHHHHHHHHHHHHHHHhccccccCCC---C-c--------c--hhHHH--HHHHh-hHHhhcchh
Q 012965          186 GNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDP---S-E--------S--KDLLT--QFRGA-AVAIASDEK  248 (452)
Q Consensus       186 ~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~-~--------~--~~~~~--~~~~~-~~~~~~~~~  248 (452)
                      .+...+ ...+||..|++.+++.++..+......||+++++   + +        +  ++..+  +.++. .+..+|+++
T Consensus       174 ~~~~~~-~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (438)
T TIGR00712       174 VLLGMA-WFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKL  252 (438)
T ss_pred             HHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCch
Confidence            333222 1236778888877666654444333344432110   0 0        0  00000  01111 123577888


Q ss_pred             HHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHH
Q 012965          249 IALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSV  325 (452)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~  325 (452)
                      ++.......+.....+. ...|.|.|+++..+.+.   +.......+.+++++++.+++.||+++++.. . .+......
T Consensus       253 ~~~~~~~~~~~~~~~~~-~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~-~-~~~~~~~~  329 (438)
T TIGR00712       253 LWYIAIANVFVYLLRYG-VLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRG-A-TGVFFMTL  329 (438)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc-H-HHHHHHHH
Confidence            87776665555544444 46789999987666544   5666777788999999999999999654321 2 22111111


Q ss_pred             HHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          326 SLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      .............      .+.    +......+..+++.............|.+|++.|++++|+.+..
T Consensus       330 ~~~~~~~~~~~~~------~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  389 (438)
T TIGR00712       330 VTIAVIVYWMNPA------GNP----LVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLF  389 (438)
T ss_pred             HHHHHHHHHhcCC------Cch----HHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchH
Confidence            1111111111100      000    12222233333332222222345678999999999999987653

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.94  E-value=1.2e-24  Score=206.29  Aligned_cols=324  Identities=14%  Similarity=0.122  Sum_probs=202.7

Q ss_pred             HhhhhhhhhHHH-HHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCc-cHHHH
Q 012965           51 AGDWLQGPYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSP-QYKIL  127 (452)
Q Consensus        51 ~~~~~~~p~l~~-i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~-~~~~l  127 (452)
                      .......|++|. +.+++|+|+.+.+++.+...+...+.+++.|+++||+|||+.+..+.++..++. ++++++ +++.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~   94 (366)
T TIGR00886        15 SVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVL   94 (366)
T ss_pred             HHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            333444888885 889999999999999999888888999999999999999999999999998876 668888 99999


Q ss_pred             HHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc----CCCcchh
Q 012965          128 MIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSF----SLGPVAP  200 (452)
Q Consensus       128 ~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~----~~~~~~~  200 (452)
                      ++.|+++|++.+.. +...+ ++.|+   ++|++..+..    .....+|..+++.+++.+.....+..    ..+||+.
T Consensus        95 ~~~~~~~g~~~~~~-~~~~~-~~~~~~~~~~r~~~~~~~----~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~  168 (366)
T TIGR00886        95 LLLRLFIGIAGGSF-ASCMP-WISFFFPKKIQGTALGLA----AGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWA  168 (366)
T ss_pred             HHHHHHHHHhchhh-HhHHH-HHHHhcCHhhhhHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHhcccccccccccch
Confidence            99999999986654 44445 67776   3455544433    22334455566666655554332211    2245666


Q ss_pred             h-HHHHHHHHHHHHHHHhccccccCCCCcchh-HH--------HHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhh
Q 012965          201 F-DAAACFLAIGMVIILSSWTENYGDPSESKD-LL--------TQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLW  270 (452)
Q Consensus       201 f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (452)
                      + ...+.+..+...+.....+|++++++++++ ..        ++..+...+.+++|+++.............+. ...+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  247 (366)
T TIGR00886       169 FVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLG-VSSI  247 (366)
T ss_pred             hHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHHHHHHHHHHHHHH-HHHH
Confidence            6 332333332222222233332221111110 00        00111344567778877766555544444333 4677


Q ss_pred             ccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCc
Q 012965          271 TPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGI  347 (452)
Q Consensus       271 ~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (452)
                      .|.|.++..+.+.   +.......+.+++++++.+++.||+|+|+.  ......................       .+ 
T Consensus       248 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~--~~~~~~~~~~~~~~~~~~~~~~-------~~-  317 (366)
T TIGR00886       248 FAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARK--LLMSFLGVAMGAFLVVLGLVSP-------LS-  317 (366)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchh--HHHHHHHHHHHHHHHHhcCCCc-------ch-
Confidence            8888877666544   455666778889999999999999998873  3333333222222222111110       00 


Q ss_pred             ccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          348 SFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       348 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                         .+.......+..+..+...+..++...|..| +++++++|+.+..
T Consensus       318 ---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~  361 (366)
T TIGR00886       318 ---LAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAI  361 (366)
T ss_pred             ---HHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHh
Confidence               1233445555666777777778888888887 5789999887654

>TIGR00898 2A0119 cation transport protein

Probab=99.94  E-value=1.8e-24  Score=214.04  Aligned_cols=309  Identities=13%  Similarity=0.034  Sum_probs=198.0

Q ss_pred             hhHHHHHhhcCCC---cchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHH
Q 012965           58 PYVYYLYSTYGFG---KGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRIL  133 (452)
Q Consensus        58 p~l~~i~~~~g~s---~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l  133 (452)
                      +..+.+.+|+|++   ..+.+++.+..+++..+++++.|+++||+|||+++..+.++.+++. ++++++|++.+++.|++
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  189 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL  189 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            5667888999999   8889999888888888999999999999999999999999998876 66899999999999999


Q ss_pred             HHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHH
Q 012965          134 GGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMV  213 (452)
Q Consensus       134 ~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~  213 (452)
                      .|++.+...+.... ++.|..+++++...     ......+..+|.++++.++..+.     +||..+.+.++..++..+
T Consensus       190 ~G~~~~~~~~~~~~-~~~e~~~~~~r~~~-----~~~~~~~~~~g~~~~~~~~~~~~-----~wr~~~~~~~i~~~~~~~  258 (505)
T TIGR00898       190 VGMGIGGIWVQAVV-LNTEFLPKKQRAIV-----GTLIQVFFSLGLVLLPLVAYFIP-----DWRWLQLAVSLPTFLFFL  258 (505)
T ss_pred             HHhhccchHHHHHH-HhheecChhhhHHH-----HHHHHHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHH
Confidence            99999998888856 88887333322221     11123344556666666554433     267778777666655544


Q ss_pred             HHHhccccccC------CCCcchhHH---------------------HH---H--HHhhHHhhcchhHHHHHHHHHhhhc
Q 012965          214 IILSSWTENYG------DPSESKDLL---------------------TQ---F--RGAAVAIASDEKIALLGAIQSLFEG  261 (452)
Q Consensus       214 ~~~~~~~~~~~------~~~~~~~~~---------------------~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~  261 (452)
                      .. ...||+++      +.+++++..                     ++   .  +...++++++|+.+...+...+...
T Consensus       259 ~~-~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  337 (505)
T TIGR00898       259 LS-WFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWF  337 (505)
T ss_pred             HH-HhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHH
Confidence            44 35566432      111110000                     00   0  0133456666766555444332222


Q ss_pred             hhhhhhhhhccccccCCCCCchHHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 012965          262 SMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSN  341 (452)
Q Consensus       262 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (452)
                      .. ....+..+.+. +..+.+........++..+++.++.+++.||+|||+.  +.....+.++.++........     
T Consensus       338 ~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~--~~~~~~~~~~~~l~~~~~~~~-----  408 (505)
T TIGR00898       338 TT-AFSYYGLVLDL-GNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYT--MAASLLLAGVALLLLLFVPVD-----  408 (505)
T ss_pred             HH-HHHHHHHhccc-cccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH--HHHHHHHHHHHHHHHHHcCCC-----
Confidence            21 11111122222 2333444455556677888999999999999998873  444444444444433322111     


Q ss_pred             cCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          342 VKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                          .    .+......++.+++.+..++..+.+.+|.+|++.|++++|+.+..
T Consensus       409 ----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~  454 (505)
T TIGR00898       409 ----L----YFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTM  454 (505)
T ss_pred             ----c----hHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHH
Confidence                0    023344455566666777788899999999999999999887764

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.93  E-value=3.6e-24  Score=209.46  Aligned_cols=310  Identities=12%  Similarity=-0.002  Sum_probs=194.6

Q ss_pred             hcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HH--hcCccHHHHHHHHHHHHhHhhhhh
Q 012965           66 TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT--KHSPQYKILMIGRILGGIATSLLF  142 (452)
Q Consensus        66 ~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~--~~~~~~~~l~~~r~l~G~~~~~~~  142 (452)
                      |++++..+.|.+.+.......+++++.|+++||+|||+++..+.++.+++. ++  +...+++.+++.|+++|++.+...
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~  149 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS  149 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence            789999999999888888888999999999999999999999999888865 44  334678889999999999999999


Q ss_pred             hhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHhccccc
Q 012965          143 SAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTEN  222 (452)
Q Consensus       143 ~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  222 (452)
                      +.... ++.|+.+++++..     .......+..+|..+++.+++.+.+.. .+||.+|.+.++..++..++.....+|+
T Consensus       150 ~~~~~-~~~~~~~~~~r~~-----~~~~~~~~~~~g~~i~~~l~~~l~~~~-~gw~~~f~i~~~~~~~~~~~~~~~~~~~  222 (465)
T TIGR00894       150 PATHK-IIVKWAPPKERSR-----LLGMSTSGFQLGTFIFLPISGWLCESW-GGWPMIFYVFGIVGCAWSLLWFVFPADD  222 (465)
T ss_pred             hhHHH-HHHhcCCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence            98866 8888844333332     112233345566677777777766431 2667788877766655444333233333


Q ss_pred             cCCCCc-chhHHHHH-------------HHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HH
Q 012965          223 YGDPSE-SKDLLTQF-------------RGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GF  285 (452)
Q Consensus       223 ~~~~~~-~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~  285 (452)
                      ++++++ .++.++..             +...++++++++++.............+. ...|.|.|+++..+.+.   +.
T Consensus       223 p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lp~~l~~~~g~s~~~~g~  301 (465)
T TIGR00894       223 PSIHPCISKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTI-LPTYLPTFISWVLRVSGKENGL  301 (465)
T ss_pred             cccCCCCCHHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCcChHHhHH
Confidence            221111 11110000             11255677788888777666665555554 57899999877666644   56


Q ss_pred             HHHHHHHHHHHHhHHHHHHhccCCCCchhH-H-H--HHHHHHHHHHHHHH-HHhhhcCCCCcCCCCcccchhhHHHHHHH
Q 012965          286 IFATFMLASMLGSSLASRLMARSPPRVESY-M-Q--IVFVVSSVSLLLPI-VTSFLVAPSNVKSGGISFSGSLQLLGFCT  360 (452)
Q Consensus       286 ~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~-~-~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (452)
                      ..+...++..++.++.|+++||.++|+... . .  ....+......... .......       +    .+..+....+
T Consensus       302 ~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~l  370 (465)
T TIGR00894       302 LSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSA-------A----FYLTIIILTL  370 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------c----hHHHHHHHHH
Confidence            667778889999999999999876443110 0 0  11111111111111 1111100       0    0123344444


Q ss_pred             HHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          361 FEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       361 ~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      .+.+.+...+..+....|..|+ .+|.+.|+.+..
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~  404 (465)
T TIGR00894       371 ANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLP  404 (465)
T ss_pred             HHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHH
Confidence            4555554555566666677766 789888888775

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.93  E-value=2.3e-24  Score=194.55  Aligned_cols=346  Identities=19%  Similarity=0.164  Sum_probs=230.7

Q ss_pred             hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcC---ccHHHHHHHHH
Q 012965           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS---PQYKILMIGRI  132 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~---~~~~~l~~~r~  132 (452)
                      +|..+.+.+|+|+|++|.+++.....+.+.+...+.|.+.||+|.|++...+.++..+-+ ..+++   ++++.+++.++
T Consensus        34 s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gl  113 (417)
T COG2223          34 SPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGL  113 (417)
T ss_pred             HHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHH
Confidence            777778889999999999999999999999999999999999999999999999998854 44554   45569999999


Q ss_pred             HHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCC-CcchhhHHHHHHH
Q 012965          133 LGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSL-GPVAPFDAAACFL  208 (452)
Q Consensus       133 l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~-~~~~~f~~~~~~~  208 (452)
                      +.|++.+... +..+ +++++   +++|...++    +. .-++|..+...++|.+...    .++ .|+....+..+..
T Consensus       114 l~G~~GasFa-v~m~-~~s~~fP~~~qG~AlGI----~g-~GN~G~av~q~~~P~v~~~----~g~~~w~~~~~i~~~~l  182 (417)
T COG2223         114 LLGLAGASFA-VGMP-NASFFFPKEKQGLALGI----AG-AGNLGVAVAQLVAPLVAVA----FGFLAWRNVAGIYVVAL  182 (417)
T ss_pred             HHhcccceeh-cccc-cccccCChhhhhHHHHH----hc-cccccHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHH
Confidence            9999977664 4446 77777   455555553    33 4445566666666665544    332 2555555555555


Q ss_pred             HHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HH
Q 012965          209 AIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GF  285 (452)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~  285 (452)
                      ++..+..+....+.++.+++.++...   ...+.+.++++.|.+++.+....+.+.. ...++|.|++++++.+.   +.
T Consensus       183 ~v~~v~~~~~~~d~p~~r~~~~~~~~---~~~~~v~~~~~~W~lsllY~~tFG~Fvg-fs~~l~~~~~~~fg~~~~~Ag~  258 (417)
T COG2223         183 AIAAVLAWLGMNDVPEHRASVKPQLP---AQLKAVFSNKDTWLLSLLYFATFGGFVG-FSAYLPMYLVTQFGLSPVTAGL  258 (417)
T ss_pred             HHHHHHHHHHhCCChhhhccccccch---hHHHHHhcCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCChhhHHH
Confidence            55444444343333221111111110   4556778899999999888877777666 59999999999888865   56


Q ss_pred             HHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHh
Q 012965          286 IFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACV  365 (452)
Q Consensus       286 ~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  365 (452)
                      ........+.+.++.+|+++||+|.+|.  +...+..+.++.............        ....+.....++...+..
T Consensus       259 ~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv--~~~~f~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~l~l~~~~  328 (417)
T COG2223         259 IAFLFPLIGALARPLGGWLSDRIGGRRV--TLAVFVGMALAAALLSLFLTGFGH--------GGSFVVFVAVFLALFVFA  328 (417)
T ss_pred             HHHHHHHHHHHHHhccchhhhhccchhH--HHHHHHHHHHHHHHHHcccccccc--------CcchHHHHHHHHHHHHHh
Confidence            6667778889999999999999998883  555555555555554433322110        111134555566667777


Q ss_pred             hchhhHHHHHHhhcCCcccccchhhhhhhhhhH------HHHHHHhccccCCchHHHHHHHHHHHHHHHH
Q 012965          366 GIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNI------FVCVVLYNVDAFPITVMFGMCSIFLLVASVL  429 (452)
Q Consensus       366 ~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  429 (452)
                      |..+...+.++..++|++ .|.+.|+.....+.      ..-+...+.++ .+...+.......+++...
T Consensus       329 G~GnGsvfk~Ip~if~~~-~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg-~~~~~f~~~~~~~~~a~v~  396 (417)
T COG2223         329 GLGNGSVFKMIPVIFPKE-TGAVTGIVGAIGGLGGFFLPLAFGVSLDLTG-SYTGAFMLLLAFYLVALVL  396 (417)
T ss_pred             ccCcchheeechHHHHhh-hhHHHHHHHHhccccccchhHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHH
Confidence            777777888888888774 56677766654222      22233344444 4555555555444444443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.93  E-value=5e-24  Score=204.01  Aligned_cols=330  Identities=17%  Similarity=0.195  Sum_probs=194.1

Q ss_pred             hhHHHHHhhcC--CCcchhHHHH-----HHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHH----
Q 012965           58 PYVYYLYSTYG--FGKGEIGQLF-----IAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYK----  125 (452)
Q Consensus        58 p~l~~i~~~~g--~s~~~~g~~~-----~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~----  125 (452)
                      +..+.+.+++.  .++.+.+...     ...++...+++++.|+++||+||||++..+.++..++. +++++++++    
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~   93 (394)
T TIGR00883        14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGI   93 (394)
T ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHH
Confidence            33345555543  4455665433     33444445677889999999999999999999998876 678888875    


Q ss_pred             ----HHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc--ccCCC
Q 012965          126 ----ILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD--SFSLG  196 (452)
Q Consensus       126 ----~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~--~~~~~  196 (452)
                          .+++.|+++|++.+...+.... ++.|.   ++|++..+    ..+.+..+|..+++.++..+...+.+  ...++
T Consensus        94 ~~~~~~~~~r~l~G~~~~~~~~~~~~-~~~~~~~~~~r~~~~~----~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~  168 (394)
T TIGR00883        94 WAPILLLLARLIQGFSLGGEWGGAAL-YLAEYAPPGKRGFYGS----FQQVGAPVGLLLAALTVLLLSYLLGDDALLEWG  168 (394)
T ss_pred             HHHHHHHHHHHHHHhhccccccccHH-HhhhcCCcccchHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccc
Confidence                4889999999999998888756 77777   34444333    23333333443444333332221111  13578


Q ss_pred             cchhhHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchh--HHHHHHHHHhhhchhhhhhhhhcccc
Q 012965          197 PVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEK--IALLGAIQSLFEGSMYTFVFLWTPAL  274 (452)
Q Consensus       197 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~  274 (452)
                      ||.+|.+.+++.++..... ...||++++++++++ .++.+++.++..++++  ++.......+.... +.....+.|.+
T Consensus       169 w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  245 (394)
T TIGR00883       169 WRIPFLVSAVLVLIGLYLR-RNLEETPVFEKAQEK-HKKKRGPIRETLTKHRKPFLLGLGLVIATTTT-FYLITTYLPTY  245 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHH-HhcCCChhHHHHHhc-cccccCCHHHHHHhchHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            8888887766655544332 244543321111110 0111222334444444  44443333333333 33356788888


Q ss_pred             ccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHH-HHHHHHhhhcCCCCcCCCCcccc
Q 012965          275 SPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSL-LLPIVTSFLVAPSNVKSGGISFS  350 (452)
Q Consensus       275 ~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  350 (452)
                      .++..+.+.   +.......+...++.++.+++.||+|||+.  +.....+..... ......... .       +    
T Consensus       246 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~--~~~~~~~~~~~~~~~~~~~~~~-~-------~----  311 (394)
T TIGR00883       246 LTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPV--LIIFTVLAALLAVPLLMALLDS-G-------S----  311 (394)
T ss_pred             HHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH--HHHHHHHHHHHHHHHHHHHhcC-C-------c----
Confidence            865555543   455666678889999999999999998873  332222222221 111111111 0       0    


Q ss_pred             hhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhh-hh------hhHHHHHHHhcccc
Q 012965          351 GSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFR-IP------LNIFVCVVLYNVDA  409 (452)
Q Consensus       351 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~------~~~~~~~~l~~~~~  409 (452)
                      .+......++.+++.+...+..+++..|.+|++.|+++.|+.. ..      .++.+++.+.+..+
T Consensus       312 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g  377 (394)
T TIGR00883       312 FTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG  377 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence            1244556677778888888889999999999999999887632 21      23455566666544

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.93  E-value=1.2e-23  Score=206.80  Aligned_cols=319  Identities=15%  Similarity=0.125  Sum_probs=184.3

Q ss_pred             hhhHHHHHhhcCCC--------cchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhc---CccH
Q 012965           57 GPYVYYLYSTYGFG--------KGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH---SPQY  124 (452)
Q Consensus        57 ~p~l~~i~~~~g~s--------~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~---~~~~  124 (452)
                      .+..+.+.++++.+        ..+.+++.+...+...+++++.|+++||+|||+++..+.++.+++. ++.+   ..++
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (481)
T TIGR00879        48 GGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSV  127 (481)
T ss_pred             hhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccch
Confidence            56666777777666        7889999999999888999999999999999999999999998875 4433   4456


Q ss_pred             HHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhcccCCCcc
Q 012965          125 KILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG---NLLVDSFSLGPV  198 (452)
Q Consensus       125 ~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~---~~l~~~~~~~~~  198 (452)
                      +.+++.|+++|++.+...+.... ++.|.   ++|++..+..    +.    +..+|..+++.++   ....  ...+||
T Consensus       128 ~~~~~~r~l~G~~~~~~~~~~~~-~i~~~~~~~~r~~~~~~~----~~----~~~~G~~~~~~~~~~~~~~~--~~~~w~  196 (481)
T TIGR00879       128 EMLIVGRVLLGIGVGIASALVPM-YLSEIAPKALRGALTSLY----QL----AITFGILVAYGFGSGKVSLN--NTLGWR  196 (481)
T ss_pred             HHHHHHHHHHHhhhhHHHhHHHH-HHHccCChhhhhhhhhHH----HH----HHHHHHHHHHHHHHHhhcCC--CCccHH
Confidence            68999999999999999887755 78887   4455544422    22    2334455555554   3322  234677


Q ss_pred             hhhHHHHHHHHHHHHHHHhccccccC------CCCcchhHHHH-----------HH-----------------HhhHHhh
Q 012965          199 APFDAAACFLAIGMVIILSSWTENYG------DPSESKDLLTQ-----------FR-----------------GAAVAIA  244 (452)
Q Consensus       199 ~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-----------~~-----------------~~~~~~~  244 (452)
                      +.|.+.+...++..... ...||++.      +.++.++..++           .+                 +..++.+
T Consensus       197 ~~f~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (481)
T TIGR00879       197 IPLGLQLIPAGLLFLGL-FFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLF  275 (481)
T ss_pred             HHHHHHHHHHHHHHHHH-hcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHH
Confidence            88877555544443333 34555321      10000000000           00                 0001111


Q ss_pred             cc-----hhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHH
Q 012965          245 SD-----EKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYM  316 (452)
Q Consensus       245 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~  316 (452)
                      +.     ++.........+...........+.|.+.++ .+.+.   +.......++.+++.++.+++.||++||+.  +
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~--~  352 (481)
T TIGR00879       276 SSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPL--L  352 (481)
T ss_pred             hcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH--H
Confidence            11     1222222222222222223335556665543 23333   456666778889999999999999998873  4


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhch-hhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          317 QIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIF-WPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      ..+..+..++............+    +.+.. ..........++..+.+.. .+....+..|.+|++.|++++|+.+..
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  427 (481)
T TIGR00879       353 LIGAAGMAICLFVLGILGASFVT----GSSKS-SGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAA  427 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccC----Ccccc-hhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHH
Confidence            44444444433333221111000    00000 0012233333333344433 366778889999999999999887765

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00896 CynX cyanate transporter

Probab=99.93  E-value=4.8e-24  Score=201.17  Aligned_cols=318  Identities=15%  Similarity=0.123  Sum_probs=200.6

Q ss_pred             hhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Q 012965           56 QGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGG  135 (452)
Q Consensus        56 ~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~l~~~~~~~~~l~~~r~l~G  135 (452)
                      ..|.+|.+.+|+|+|+++.|+..+...+...+++++.|+++||+||||++..+.++..++.+...+++.+.+++.|++.|
T Consensus        19 ~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g   98 (355)
T TIGR00896        19 VGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIRSAPGTALLFAGTALIG   98 (355)
T ss_pred             CcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            37899999999999999999999999998889999999999999999999999888877653227789999999999999


Q ss_pred             hHhhhhhhhhhhhhhhhc--ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHH
Q 012965          136 IATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMV  213 (452)
Q Consensus       136 ~~~~~~~~~~~~~~i~e~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~  213 (452)
                      ++.+...+.... ++.|.  ++|++..+    ..+.+..    +|..+++.++..+.+..+.+||..|...++..++...
T Consensus        99 ~g~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~----~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~  169 (355)
T TIGR00896        99 VGIAIINVLLPS-LIKRDFPQRVGLMTG----LYSMALM----GGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL  169 (355)
T ss_pred             HHHHHHhccchH-HHHHhCcchhhHHHH----HHHHHHH----HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            999987766644 66665  33333333    2333333    4444444444444443444578777665544433322


Q ss_pred             HHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HHHHHHH
Q 012965          214 IILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATF  290 (452)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~  290 (452)
                      .   ..|+.+++++++++.   .+...++.+|+|+.+.......+.....+. ...|.|.+.++ .+.+.   +...+..
T Consensus       170 ~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lp~~~~~-~g~~~~~~g~~~~~~  241 (355)
T TIGR00896       170 A---WIPQVRRRVAANQTT---TRLTPVRIWRSPLAWQVTVFFGLQSGLYYS-LIGWLPAILIS-HGASAATAGSLLALM  241 (355)
T ss_pred             H---HhhhhccccCCCCCC---CCCCCchhhcCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-cCCCHHHHHHHHHHH
Confidence            2   223322211111110   011234566777777665544443344333 46788888865 35543   5677778


Q ss_pred             HHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhh
Q 012965          291 MLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWP  370 (452)
Q Consensus       291 ~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  370 (452)
                      .++.++++++.+++.||+++|+. .+..+..+..++..........                .......+.|++.+...|
T Consensus       242 ~~~~i~~~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~g~~~g~~~~  304 (355)
T TIGR00896       242 QLAQAASALLIPALARRVKDQRG-IVAVLAVLQLVGLCGLLFAPMH----------------GLWAWALVLGLGQGGAFP  304 (355)
T ss_pred             HHHHHHHHHhHHHHHhhhccchH-HHHHHHHHHHHHHHHHHHhhhh----------------HHHHHHHHHHHhhhhHhH
Confidence            89999999999999999965442 2333333333333332222111                111245677888888888


Q ss_pred             HHHHHHhhcCC-cccccchhhhhhhh------hhHHHHHHHhcc
Q 012965          371 SIMKMRSQYIP-EEARSTIMNFFRIP------LNIFVCVVLYNV  407 (452)
Q Consensus       371 ~~~~~~~~~~p-~~~r~~~~g~~~~~------~~~~~~~~l~~~  407 (452)
                      ...+...+..+ ++++++..++.+..      .++.+.+.+.+.
T Consensus       305 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~  348 (355)
T TIGR00896       305 LALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDI  348 (355)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87777765554 55667777765532      244455555554

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.93  E-value=2e-24  Score=205.59  Aligned_cols=315  Identities=14%  Similarity=0.089  Sum_probs=200.8

Q ss_pred             hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHH
Q 012965           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G  135 (452)
                      .+..|.+.+++|.|..+.|++.+...+...+++++.|+++||+|||+++..+.++.+++. +++++++++.+++.|++.|
T Consensus        15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   94 (379)
T TIGR00881        15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNG   94 (379)
T ss_pred             hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            556678889999999999999999888888999999999999999999999999998876 6688999999999999999


Q ss_pred             hHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhcccCCCcchhhHHHHHHHHHH
Q 012965          136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSG-LFGNLLVDSFSLGPVAPFDAAACFLAIG  211 (452)
Q Consensus       136 ~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~-~l~~~l~~~~~~~~~~~f~~~~~~~~~~  211 (452)
                      ++.+...+...+ ++.|.   ++|++..+..+.    ..    .+|..+++ .++..+.+  .++|+..|.+.+.+.++.
T Consensus        95 ~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~----~~----~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  163 (379)
T TIGR00881        95 IFQGMGWPPCGR-TVTKWFSRSERGTWVSFWNC----SH----NVGGGLLPPLVLFGIAE--LYSWHWVFIVPGIIAIIV  163 (379)
T ss_pred             hhccccCCchHH-HHHHhcCHhhheeeEeehhc----cc----hhHHHHHHHHHHHHHHh--cCCchhHHHHHHHHHHHH
Confidence            999998888766 77776   445555553333    22    33444444 23333333  346677787776665554


Q ss_pred             HHHHHhccccccCCC----------Ccc-------hhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhcccc
Q 012965          212 MVIILSSWTENYGDP----------SES-------KDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPAL  274 (452)
Q Consensus       212 ~~~~~~~~~~~~~~~----------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  274 (452)
                      .+......||+++++          ++.       ++..++.+...++.+++|.++...+...+....... ...+.|.+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  242 (379)
T TIGR00881       164 SLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTG-ILDWSPLY  242 (379)
T ss_pred             HHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            444443344322110          000       000011122345567778877766665555544443 46788888


Q ss_pred             ccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccch
Q 012965          275 SPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSG  351 (452)
Q Consensus       275 ~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (452)
                      .++..+.+.   +.......++.+++.++.+++.||..+|+................. ...... .      .+    .
T Consensus       243 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~------~~----~  310 (379)
T TIGR00881       243 LTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLL-VYWLNP-A------AN----P  310 (379)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH-HHhcCc-c------hh----H
Confidence            876666543   5667777788999999999999986433311121111111111111 111100 0      00    0


Q ss_pred             hhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          352 SLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       352 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      +.........+.......+....+..|..|++.|+++.|+.+..
T Consensus       311 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  354 (379)
T TIGR00881       311 LMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFF  354 (379)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHh
Confidence            12334444555544445566678899999999999999988764

>TIGR00901 2A0125 AmpG-related permease

Probab=99.93  E-value=1.1e-23  Score=198.85  Aligned_cols=322  Identities=15%  Similarity=0.042  Sum_probs=200.2

Q ss_pred             hhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhcccccccccccc-----CcchHH-HHHHHHHHHHH-HHhcC---ccHH
Q 012965           56 QGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-----GRKRAC-VTYCLTYILSC-ITKHS---PQYK  125 (452)
Q Consensus        56 ~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~-----Grr~~l-~~~~~~~~i~~-l~~~~---~~~~  125 (452)
                      ..+.+|.+.+|+|+|.+|+|...... ....+ .+++|+++||+     ||||.+ +.+.++.++.. .+++.   .+.+
T Consensus         7 ~~~~~~~~~~~~g~s~~~~g~~~~~~-~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~   84 (356)
T TIGR00901         7 VGNTLPYWLRSKNVSLKTIGFFSLVG-LPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLP   84 (356)
T ss_pred             HHhHHHHHHHHcCCCHHHHHHHHHHH-HHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHH
Confidence            35677889999999999999885443 32333 77899999998     899975 56666666654 45565   4666


Q ss_pred             HHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccC------CC
Q 012965          126 ILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS------LG  196 (452)
Q Consensus       126 ~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~------~~  196 (452)
                      .+....++.+.+.+...++..+ ++.|.   ++|++..+..    +    .+..+|.++++.++..+.++.+      |+
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~~a-~~~~~~~~~~r~~~~~~~----~----~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~  155 (356)
T TIGR00901        85 LLAGLAFLIAFFSATQDIALDA-WRLEILSDEELGYGSTIY----I----VGYRAGMLLSGSLALVLASPEFANTGLITL  155 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHhCCHhhhchHHHHH----H----HHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence            7777888888888888787766 77776   4455444422    2    2333444444455544443333      56


Q ss_pred             cchhhHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchh---HHHHHHHHHhhhchhhhhhhhhccc
Q 012965          197 PVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEK---IALLGAIQSLFEGSMYTFVFLWTPA  273 (452)
Q Consensus       197 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~  273 (452)
                      ||.+|.+.++..++..+......||+++++++.++..++.++..++++++++   .+.......+.....+ ....+.|.
T Consensus       156 wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  234 (356)
T TIGR00901       156 WGYIFFWTALLILPGLLVTLFLAKEPQEDASVPKPLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDS-AATVLTTL  234 (356)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            8999988887766655444433455332211111122233445566667664   5555444444444433 35677888


Q ss_pred             cccCCCCCchH---HHHHHHH-HHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCccc
Q 012965          274 LSPNDEEIPHG---FIFATFM-LASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISF  349 (452)
Q Consensus       274 ~~~~~~~~~~~---~~~~~~~-i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (452)
                      |.++ .|.+..   ......+ +..+++.++++++.||+|+|+.  +..+..+..+......+.....+.    +.....
T Consensus       235 ~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~--l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  307 (356)
T TIGR00901       235 FLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYA--LLLFGIVQALTNAGFVWLASNGHH----DGITFP  307 (356)
T ss_pred             HHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHHHHHHHHHhcCcc----cccccc
Confidence            8776 666553   3444444 5678899999999999998773  444444444433333222111000    000000


Q ss_pred             chhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhhh
Q 012965          350 SGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPL  396 (452)
Q Consensus       350 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~  396 (452)
                      ..+......++.+++.+..++...++.+|.+|+++|++.+|+.+...
T Consensus       308 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  354 (356)
T TIGR00901       308 HLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLS  354 (356)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence            11345556677788889999999999999999999999999876543

>TIGR00889 2A0110 nucleoside transporter

Probab=99.93  E-value=2.8e-23  Score=199.35  Aligned_cols=350  Identities=12%  Similarity=0.040  Sum_probs=212.5

Q ss_pred             HHHHHHHhhhhhhhhH-HHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCc-chHHHHHHHHHHHHH-HHhcC
Q 012965           45 VYSLMMAGDWLQGPYV-YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGR-KRACVTYCLTYILSC-ITKHS  121 (452)
Q Consensus        45 ~~~~~~~~~~~~~p~l-~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Gr-r~~l~~~~~~~~i~~-l~~~~  121 (452)
                      ..+..+...+...|.+ +.+.+++|++..|+|++.+...+...++++++|+++||+|| |+++..+.++.+++. +..+.
T Consensus        10 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~   89 (418)
T TIGR00889        10 MSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQV   89 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence            3344445555554444 44557799999999999999999999999999999999965 778887777776665 66788


Q ss_pred             ccHHHHHHHHHHHHhHhhhhhhhhhhhh---hh-------hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 012965          122 PQYKILMIGRILGGIATSLLFSAFESWL---VA-------EHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD  191 (452)
Q Consensus       122 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~---i~-------e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~  191 (452)
                      ++++.+++.|++.|++.+...+...++.   ..       +..+|.+..+          .    +|..+++.+++.+. 
T Consensus        90 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G----------~----lG~~ig~~l~g~l~-  154 (418)
T TIGR00889        90 TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG----------T----IGFIAAMWAVSLLD-  154 (418)
T ss_pred             cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh----------h----HHHHHHHHHHHHhc-
Confidence            9999999999999998877777665522   11       1112222111          1    34444444544432 


Q ss_pred             ccCCCcchhhHHHHHHHHHHHHHHHhccccccCCCCcc-hhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhh
Q 012965          192 SFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSES-KDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLW  270 (452)
Q Consensus       192 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (452)
                       ....|+ +|++.+++.++..+.. ...||++++++++ ++..++.+.+.++.+|+|+++.+.....+...... ....+
T Consensus       155 -~~~~~~-~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~-~~~~~  230 (418)
T TIGR00889       155 -IELSNI-QLYITAGSSALLGVFA-LTLPDIPVAKSTAKMSIKVMLGLDAFILFKNKRMAIFFFFSMLLGAPLQ-ITNIF  230 (418)
T ss_pred             -ccchhH-HHHHHHHHHHHHHHHH-hcCCCCCCCccccccCHHHHhhhhHHHHhcCCCeeeHHHHHHHHHhHHH-HHHHh
Confidence             122333 4555555555444433 3566653222211 11112112234467888887766555554433322 23445


Q ss_pred             ccccccCC-CC--------C-chHHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 012965          271 TPALSPND-EE--------I-PHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPS  340 (452)
Q Consensus       271 ~p~~~~~~-~~--------~-~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (452)
                      .|.+.++. .+        . ..+...+...+..+++.+..+++.||+|+|+  .+..+..+.++...........    
T Consensus       231 ~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~--~l~~~~~~~~v~~~l~~~~~~~----  304 (418)
T TIGR00889       231 GNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKK--VMLLSLVAWALRFGFFAYGDPE----  304 (418)
T ss_pred             HHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH--HHHHHHHHHHHHHHHHHHcCcc----
Confidence            55555431 11        1 1266777777889999999999999999887  3444444444443333221110    


Q ss_pred             CcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhh-hh------hhHHHHHHHhcccc----
Q 012965          341 NVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFR-IP------LNIFVCVVLYNVDA----  409 (452)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~------~~~~~~~~l~~~~~----  409 (452)
                             ....+..++..++.+++.+...+....++.|.+|++.|++++|+.+ ..      .++.+++.+.+..+    
T Consensus       305 -------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~  377 (418)
T TIGR00889       305 -------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGT  377 (418)
T ss_pred             -------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccC
Confidence                   0001244556778888888788888899999999999999998886 32      34455666666533    


Q ss_pred             CCchHHHHHHHHHHHHH
Q 012965          410 FPITVMFGMCSIFLLVA  426 (452)
Q Consensus       410 ~~~~~~~~~~~~~~~~~  426 (452)
                      .++...+..++++.+++
T Consensus       378 ~~~~~~f~~~~~~~~i~  394 (418)
T TIGR00889       378 FDWQTMWLFFAGYIAIL  394 (418)
T ss_pred             CchHHHHHHHHHHHHHH
Confidence            34555555444444333

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.93  E-value=9.3e-23  Score=195.56  Aligned_cols=362  Identities=15%  Similarity=0.050  Sum_probs=212.5

Q ss_pred             HHHHhhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhcccccccccccc-----Ccch-HHHHHHHHHHHHH-HHhc
Q 012965           48 LMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-----GRKR-ACVTYCLTYILSC-ITKH  120 (452)
Q Consensus        48 ~~~~~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~-----Grr~-~l~~~~~~~~i~~-l~~~  120 (452)
                      .-....++..+.+|...++.|+|.+|+|.+......  .+..+++|+++||+     |||| .+..+..+.+++. .+++
T Consensus        10 ~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~   87 (402)
T PRK11902         10 ASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAF   87 (402)
T ss_pred             HHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHh
Confidence            333445555788888999999999999988655553  47778999999999     8876 6777777777664 4455


Q ss_pred             C---ccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhccc---ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccC
Q 012965          121 S---PQYKILMIGRILGGIATSLLFSAFESWLVAEHNK---RGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS  194 (452)
Q Consensus       121 ~---~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~~~---r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~  194 (452)
                      .   ++++.+++..++.+...+...+...+ ++.|..+   |++..+..        ..|..+|..+++.++..+.+. .
T Consensus        88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a-l~~~~~~~~~r~~~~~~~--------~~g~~~g~i~g~~l~~~l~~~-~  157 (402)
T PRK11902         88 CPPHAALWPLAGLAVLVAFLSASQDIVFDA-YSTDVLHPEERGAGAAVK--------VLGYRLAMLVSGGLALWLADR-V  157 (402)
T ss_pred             cCccchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcChhhhhHHHHHH--------HHHHHHHHHHHhHHHHHHHhc-c
Confidence            4   45778888888888888888888766 7787733   44433322        234445555555555555542 2


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhcccc
Q 012965          195 LGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPAL  274 (452)
Q Consensus       195 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  274 (452)
                      ++||..|.+.+++.++..... ...||++.+++++++..++.+++.++++|+|+++.......+........ ..+.+.+
T Consensus       158 ~gw~~~f~i~a~~~l~~~l~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~~  235 (402)
T PRK11902        158 LGWGNTYLLMAGLMLAGALTT-LWAPEPEVPARPPRSLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFA-GSLSTTF  235 (402)
T ss_pred             cCHHHHHHHHHHHHHHHHHHH-HhcCCCcccccccchhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHH-HHHHHHH
Confidence            478888988777665544433 34555433322222222234556677888888776655544443322211 2233334


Q ss_pred             ccCCCCCch---HHHHHHHH-HHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccc
Q 012965          275 SPNDEEIPH---GFIFATFM-LASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFS  350 (452)
Q Consensus       275 ~~~~~~~~~---~~~~~~~~-i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (452)
                      ..+..|.+.   +......+ ++.+++..+.+++.||+++|+.  +........+............+       +.   
T Consensus       236 l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~--l~~~~~~~~l~~l~~~~~~~~~~-------~~---  303 (402)
T PRK11902        236 LIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRS--LMLFGVLQAVSNLGYWVLAVTPK-------HL---  303 (402)
T ss_pred             HHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHhcCC-------cH---
Confidence            444456555   34443333 4578899999999999998772  33333333322222211111100       00   


Q ss_pred             hhhHHHHH----HHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhh---hhhHHHHHHHhccccCCchHHHHHHHHHH
Q 012965          351 GSLQLLGF----CTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRI---PLNIFVCVVLYNVDAFPITVMFGMCSIFL  423 (452)
Q Consensus       351 ~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  423 (452)
                       +......    +..+++.+...+....++++.+|.+.++...++.+.   ..+ .+++.+.+..  ++...+...+++.
T Consensus       304 -~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~G~l~~~~--G~~~~f~~~~~~~  379 (402)
T PRK11902        304 -WTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVG-PTSGYLVEAY--GWPGFYLMTVVIA  379 (402)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh--ChHHHHHHHHHHH
Confidence             2223332    345556666677788888888888776643333222   233 3566677763  4555555555555


Q ss_pred             HHHHHHHHhhhhhhCC
Q 012965          424 LVASVLQRRLMVIADK  439 (452)
Q Consensus       424 ~~~~~~~~~~~~~~~~  439 (452)
                      ++.....++.+++.++
T Consensus       380 ~~~~~~~~~~~~~~~~  395 (402)
T PRK11902        380 LPGLALLWLMRGTIGR  395 (402)
T ss_pred             HHHHHHHHHHhhhccc
Confidence            5555555554444443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.93  E-value=3.6e-23  Score=196.98  Aligned_cols=329  Identities=13%  Similarity=0.086  Sum_probs=211.4

Q ss_pred             HHHHHHhhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcc----hHHHHHHHHHHHHH-HHhc
Q 012965           46 YSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRK----RACVTYCLTYILSC-ITKH  120 (452)
Q Consensus        46 ~~~~~~~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr----~~l~~~~~~~~i~~-l~~~  120 (452)
                      .+....+.++..|++|...+|+|.|..++|.+.+...+...+.+++.|+++||+|||    +.+.....+  ... ....
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~--~~~~~~~~   90 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLL--FAVAFWFG   90 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHH--HHHHHHHh
Confidence            344445667778999999999999999999999999988889999999999999994    333222211  122 2345


Q ss_pred             CccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcch
Q 012965          121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVA  199 (452)
Q Consensus       121 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~  199 (452)
                      ++++|.+++.|++.|++.+...|...+ +..++ ++|++..+..+..        ..+|..++|.+++.+.++  ++||.
T Consensus        91 ~~~~~~l~i~~~l~g~~~~~~~~~~~a-~~~~~~~~~~~a~~~~~~~--------~~lg~~igp~lgg~l~~~--~g~~~  159 (382)
T PRK11128         91 AHSFWLLFVAIGLFNLFFSPLVPLTDA-LANTWQKQIGLDYGKVRLW--------GSIAFVIGSALTGKLVSW--FGEQA  159 (382)
T ss_pred             cccHHHHHHHHHHHHHHHcccccHHHH-HHHHHHhhccCCcchHHHH--------HHHHHHHHHHHHHHHHHH--cChhH
Confidence            789999999999999998888887655 55555 4455544433322        235666666777766654  46677


Q ss_pred             hhHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCC
Q 012965          200 PFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDE  279 (452)
Q Consensus       200 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  279 (452)
                      .|+..++..++..+... ..||+++++++++ ..++..++.++++|+|+++.......+....... ...+.|.|.++ .
T Consensus       160 ~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~-~  235 (382)
T PRK11128        160 ILWILTAGVASMLLGQL-LRPTIMPQGESRQ-QESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAA-YYGFSAIYWQA-A  235 (382)
T ss_pred             HHHHHHHHHHHHHHHHH-ccCCCCCcccccc-ccccccchHHHHHcChhHHHHHHHHHHHHHHhHh-HHHHHHHHHHH-C
Confidence            78766654444333322 3444332221111 1111133566788999888776655555444322 34556666654 4


Q ss_pred             CCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHH
Q 012965          280 EIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLL  356 (452)
Q Consensus       280 ~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (452)
                      |.+.   +...+...++.++...+.+++.||+++|+.  +..+....++...........               +..++
T Consensus       236 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~--l~~~~~~~~~~~~~~~~~~~~---------------~~~~~  298 (382)
T PRK11128        236 GYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDL--LLLSAICGVVRWGLMGSTTAL---------------PWLIV  298 (382)
T ss_pred             CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHHHHHhhhhH---------------HHHHH
Confidence            4443   666666677888889999999999988872  444444444433332222211               35566


Q ss_pred             HHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh-------hhHHHHHHHhcccc
Q 012965          357 GFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP-------LNIFVCVVLYNVDA  409 (452)
Q Consensus       357 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-------~~~~~~~~l~~~~~  409 (452)
                      ..++.+++.+...+....+..+. +++++++..+..+..       .+..+++.+.+..+
T Consensus       299 ~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g  357 (382)
T PRK11128        299 IQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG  357 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            78888888888888888888887 555567777766522       34566677777644

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.93  E-value=9e-23  Score=195.06  Aligned_cols=329  Identities=9%  Similarity=0.058  Sum_probs=212.7

Q ss_pred             HhhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HH---hcCccHHH
Q 012965           51 AGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT---KHSPQYKI  126 (452)
Q Consensus        51 ~~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~---~~~~~~~~  126 (452)
                      +.+++..|.+|.+.+++|.|+.+.|++.+..+....+++++.|++.||+|||+++..+..+++++. +.   +..++++.
T Consensus        17 ~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~   96 (410)
T TIGR00885        17 FANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTL   96 (410)
T ss_pred             HHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence            455666899999999999999999999999999888999999999999999999999999998875 43   23578999


Q ss_pred             HHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc------------
Q 012965          127 LMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD------------  191 (452)
Q Consensus       127 l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~------------  191 (452)
                      +++.|++.|+|.+...+...+ ++.+.   ++|+++.+..    +....+|..+|+.+++.+.....+            
T Consensus        97 ~l~~~~l~G~g~g~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~  171 (410)
T TIGR00885        97 FLVGLFILTAGLGFLETAANP-YILVMGPESTATRRLNLA----QSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSP  171 (410)
T ss_pred             HHHHHHHHHhhHHHHHhhhhH-HHHHHCCHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCH
Confidence            999999999999999888766 65554   3444444433    334444555555555444221100            


Q ss_pred             --------ccCCCcchhhHHHHHHHHHHHHHHH-hccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhch
Q 012965          192 --------SFSLGPVAPFDAAACFLAIGMVIIL-SSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGS  262 (452)
Q Consensus       192 --------~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (452)
                              ....+||.+|.+.+++.++..++.. ...||.++++++ +   ++.+++.++.+|+|+++......++....
T Consensus       172 ~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~l~~f~yvg~  247 (410)
T TIGR00885       172 EELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNHSDAK-Q---ISFSASLSRLARIRHYREGVIAQFFYVGV  247 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc-c---ccchhhHHHHHhChhHHHHHHHHHHHHHH
Confidence                    0113588889877766655443332 234442221111 1   11122334667888877765555554444


Q ss_pred             hhhhhhhhccccccCC-CCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcC
Q 012965          263 MYTFVFLWTPALSPND-EEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVA  338 (452)
Q Consensus       263 ~~~~~~~~~p~~~~~~-~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (452)
                      ... ...+.+.|.++. .+.+.   +...+.......+|+++++++.||+++|+  .+........+.+++......   
T Consensus       248 e~~-~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~--~l~i~~~~~~~~~ll~~~~~~---  321 (410)
T TIGR00885       248 QIM-CWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHK--VLMAYAIIGMALCLGSIFAGG---  321 (410)
T ss_pred             HHH-HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH--HHHHHHHHHHHHHHHHHHcCC---
Confidence            333 466777777542 23332   23344455678899999999999998776  344444444443333322111   


Q ss_pred             CCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhh----hhhHHHHHHHhcc
Q 012965          339 PSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRI----PLNIFVCVVLYNV  407 (452)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~----~~~~~~~~~l~~~  407 (452)
                                   ........+.+++.+..+|..++...+..+++.+....++...    ...+.+.+.+.|.
T Consensus       322 -------------~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~~Gga~~p~l~G~~~d~  381 (410)
T TIGR00885       322 -------------HVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAIIGGGIVPPLQGFIIDM  381 (410)
T ss_pred             -------------hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhccchHHHHHHHHHHH
Confidence                         1346677788889999999999999999998875434333222    2333444555553

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.92  E-value=6e-22  Score=193.79  Aligned_cols=353  Identities=14%  Similarity=0.083  Sum_probs=207.5

Q ss_pred             HHHhhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhcccccccccccc-----CcchH-HHHHHHHHHHHH-HHhcC
Q 012965           49 MMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-----GRKRA-CVTYCLTYILSC-ITKHS  121 (452)
Q Consensus        49 ~~~~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~-----Grr~~-l~~~~~~~~i~~-l~~~~  121 (452)
                      ......+..+.+|...++.|.|.+++|........  .+..+++|+++||+     ||||. +..+.+..+++. .+++.
T Consensus        24 ~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~  101 (491)
T PRK11010         24 SGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQA--YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFL  101 (491)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            33455555888888899999999999976333322  25667899999999     99986 556666666664 44553


Q ss_pred             ---ccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCC
Q 012965          122 ---PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSL  195 (452)
Q Consensus       122 ---~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~  195 (452)
                         ++++.+.+.+++.|++.+...+...+ +..|+   ++|++..+        ....|..+|.++++.++..+.+. .+
T Consensus       102 ~~~~~l~~l~~~~~l~~~~~a~~~i~~~a-~~~~~~~~~~rg~~~~--------i~~~g~~lG~llg~~l~~~l~~~-~~  171 (491)
T PRK11010        102 EPGTQLRWLAALAVVIAFCSASQDIVFDA-WKTDVLPAEERGAGAA--------ISVLGYRLAMLVSGGLALWLADR-YL  171 (491)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcChhhhHHHHH--------HHHHHHHHHHHHHHHHHHHHHhc-cc
Confidence               57888999999999999988888766 77877   33333333        22234455666666666665541 25


Q ss_pred             CcchhhHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccc
Q 012965          196 GPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALS  275 (452)
Q Consensus       196 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  275 (452)
                      +||..|++.+++.++..+... ..||++++++++++..++..++.++.+++++.+.......+...... ....+.+.|+
T Consensus       172 GWr~~f~i~a~l~ll~~l~~~-~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~-~~~~~~~~~l  249 (491)
T PRK11010        172 GWQGMYWLMAALLIPCIIATL-LAPEPTDTIPVPKTLEQAVVAPLRDFFGRNNAWLILLLIVLYKLGDA-FAMSLTTTFL  249 (491)
T ss_pred             CHHHHHHHHHHHHHHHHHHHH-hcCCCccccccccchhhhHHHHHHHHHcCcCHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            788999888777666544443 35554322111111111222345566666666655444433333322 2355666676


Q ss_pred             cCCCCCch---HHHHH-HHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccch
Q 012965          276 PNDEEIPH---GFIFA-TFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSG  351 (452)
Q Consensus       276 ~~~~~~~~---~~~~~-~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (452)
                      .+..|.+.   +.... ...++.+++.++.|+++||+|+|+.  +.....+..+........... .++          .
T Consensus       250 ~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~--l~i~~~l~~l~~l~~~~l~~~-~~~----------~  316 (491)
T PRK11010        250 IRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRA--LMIFGILQGVSNAGYWLLSIT-DKN----------L  316 (491)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHhc-ccc----------H
Confidence            55556655   34443 3346889999999999999998762  333333323222221111111 000          0


Q ss_pred             hhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhhhhH------HHHHHHhccccCCchHHHHHHHHHHHH
Q 012965          352 SLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNI------FVCVVLYNVDAFPITVMFGMCSIFLLV  425 (452)
Q Consensus       352 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~  425 (452)
                      +......++..+..+...+..+++..+..|++.+++.+|+.+...+.      .+++.+.+..+  +...+...+++.+.
T Consensus       317 ~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G--~~~~f~~~~~~~l~  394 (491)
T PRK11010        317 YSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG--WPTFYLFSVAAAVP  394 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--hHHHHHHHHHHHHH
Confidence            12233444444445555566788888999998888888777653221      23455555533  44445544444444


Q ss_pred             HHHHH
Q 012965          426 ASVLQ  430 (452)
Q Consensus       426 ~~~~~  430 (452)
                      +.+..
T Consensus       395 ~l~~~  399 (491)
T PRK11010        395 GLLLL  399 (491)
T ss_pred             HHHHH
Confidence            44333

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.92  E-value=5.5e-23  Score=198.41  Aligned_cols=352  Identities=14%  Similarity=0.073  Sum_probs=193.4

Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHh-hcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH--H
Q 012965           41 NYLLVYSLMMAGDWLQGPYVYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC--I  117 (452)
Q Consensus        41 ~~~~~~~~~~~~~~~~~p~l~~i~~-~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~--l  117 (452)
                      ......++...+.+...|+++...+ ++|+|+.++|.+.+...+...+.+++.|+++||+||||++..+..+.++..  .
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~   93 (420)
T PRK09528         14 IFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPF   93 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            3334444444445555777766654 599999999999999999999999999999999999999988766655432  1


Q ss_pred             Hh--cCc-----cHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 012965          118 TK--HSP-----QYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLL  189 (452)
Q Consensus       118 ~~--~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l  189 (452)
                      ..  .++     ......++++..|.+.....+.... +..+. +++++..+..+.    .    ..+|..+++.+++.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~----~----~~~g~~i~~~~~g~l  164 (420)
T PRK09528         94 FIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEA-YIERVSRRSGFEYGRARM----W----GSLGWALCAFIAGIL  164 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhh-HHHHHHhhccccchhhHH----h----hhHHHHHHHHHHHHH
Confidence            11  111     1111223333334333333333322 22222 223333232222    2    234555555666655


Q ss_pred             hcccCCCcchhhHHHHHHHHHHHHHHHhccccccCCC---Ccc-hhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhh
Q 012965          190 VDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDP---SES-KDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYT  265 (452)
Q Consensus       190 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (452)
                      .+   .+|+.+|+..+++.++.........+|+++++   +++ ++..+...++..+.+|+|+++............ +.
T Consensus       165 ~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~-~~  240 (420)
T PRK09528        165 FN---INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGANASAVSLKDALALLKLPKFWFLVLYVIGVACF-YD  240 (420)
T ss_pred             Hh---cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccchhcccccccHHHHHHHccCCCeEeehHHHHHHHHH-HH
Confidence            43   35667787777666555544443333332221   100 001111122344567788766554433322222 22


Q ss_pred             hhhhhccccccCC---CCCc---hHHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCC
Q 012965          266 FVFLWTPALSPND---EEIP---HGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAP  339 (452)
Q Consensus       266 ~~~~~~p~~~~~~---~~~~---~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (452)
                      ....+.|.+..+.   .+.+   .+...+...+...++.++.|++.||+|+|+.  +..+..+.++......+....   
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~--~~~~~~l~~~~~~l~~~~~~~---  315 (420)
T PRK09528        241 VFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNA--LLLAGTIMAVRIIGSGFATGP---  315 (420)
T ss_pred             HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh--hHHHHHHHHHHHHHHHhcccH---
Confidence            2233455544321   1222   2566777778888999999999999999883  444444444433333222111   


Q ss_pred             CCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhh-hhh------hhhHHHHHHHhccccCCc
Q 012965          340 SNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNF-FRI------PLNIFVCVVLYNVDAFPI  412 (452)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~-~~~------~~~~~~~~~l~~~~~~~~  412 (452)
                                  +..+....+.+.+.+...+....+..|.+|++.+++..+. .++      ..+..+.+++.+..+  +
T Consensus       316 ------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G--~  381 (420)
T PRK09528        316 ------------LEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG--F  381 (420)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC--c
Confidence                        2445556666777776667777888999999999887654 232      134455566666543  4


Q ss_pred             hHHHHHHHHHHH
Q 012965          413 TVMFGMCSIFLL  424 (452)
Q Consensus       413 ~~~~~~~~~~~~  424 (452)
                      ...+..++++.+
T Consensus       382 ~~~f~~~~~~~~  393 (420)
T PRK09528        382 QGTYLILGGIVL  393 (420)
T ss_pred             hHHHHHHHHHHH
Confidence            444444444333

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.91  E-value=2.3e-22  Score=189.28  Aligned_cols=322  Identities=24%  Similarity=0.303  Sum_probs=222.6

Q ss_pred             HHHHhhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHH
Q 012965           48 LMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKI  126 (452)
Q Consensus        48 ~~~~~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~  126 (452)
                      ..........+..|...+++|.++.+.+.+.+...+...+.+++.|+++||+|||+.+..+..+..++. ...+.++++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~   89 (352)
T cd06174          10 LSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWL   89 (352)
T ss_pred             HHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHH
Confidence            333445555788888889999999999999999988888999999999999999999999999998876 6677899999


Q ss_pred             HHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHH
Q 012965          127 LMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDA  203 (452)
Q Consensus       127 l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~  203 (452)
                      +++.|++.|++.+...+...+ ++.|.   ++|++..+..    .    .+..+|..+++.+++.+.+..+  |+..+.+
T Consensus        90 ~~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~----~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~  158 (352)
T cd06174          90 LLVGRFLLGLGGGALYPAAAA-LIAEWFPPKERGRALGLF----S----AGFGLGALLGPLLGGLLAESLG--WRWLFLI  158 (352)
T ss_pred             HHHHHHHHHcccccccHhHHH-HHHHhCCccchhhhhhHH----H----HHHHHHHHHHHHHHHHHHHHhh--HHHHHHH
Confidence            999999999999998888866 77777   3444444422    2    2334555555566666555443  5677777


Q ss_pred             HHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch
Q 012965          204 AACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH  283 (452)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  283 (452)
                      .+...++...... ..+                          |+.+............... ...+.|.+.++..+.+.
T Consensus       159 ~~~~~~~~~~~~~-~~~--------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  210 (352)
T cd06174         159 LAILGLLLALLLL-FLL--------------------------RLLLLLALAFFLLSFGYYG-LLTYLPLYLQEVLGLSA  210 (352)
T ss_pred             HHHHHHHHHHHHH-HHH--------------------------HHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCCH
Confidence            6666655544433 222                          3344444444444444333 46677777766544433


Q ss_pred             ---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHH
Q 012965          284 ---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCT  360 (452)
Q Consensus       284 ---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (452)
                         +.......++..++.++.+++.||++||+. .+..+.....+...........               +...+...+
T Consensus       211 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~---------------~~~~~~~~~  274 (352)
T cd06174         211 AEAGLLLSLFGLGGILGALLGGLLSDRLGRRRL-LLLIGLLLAALGLLLLALAPSL---------------ALLLVALLL  274 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhccH---------------HHHHHHHHH
Confidence               667777889999999999999999988761 2444444444444443332221               356778888


Q ss_pred             HHHHhhchhhHHHHHHhhcCCcccccchhhhhhhhh------hHHHHHHHhccccCCchHHHHHHHHHHHHH
Q 012965          361 FEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPL------NIFVCVVLYNVDAFPITVMFGMCSIFLLVA  426 (452)
Q Consensus       361 ~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  426 (452)
                      .+++.+...+...++..|..|+++|++.+|+.+...      +..+.+.+.+.  .++...+...++..++.
T Consensus       275 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~--~~~~~~~~~~~~~~~i~  344 (352)
T cd06174         275 LGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT--GGYGGVFLILAALALLA  344 (352)
T ss_pred             HHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCcchHHHHHHHHHHHH
Confidence            999999999999999999999999999999887742      22344444443  34444444444444433

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.91  E-value=7.3e-22  Score=189.10  Aligned_cols=355  Identities=14%  Similarity=0.068  Sum_probs=207.7

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhHHHHH-hhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-
Q 012965           39 KNNYLLVYSLMMAGDWLQGPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-  116 (452)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~p~l~~i~-~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-  116 (452)
                      -|......++...+.+...|++|... +++|.|+.+.|.+.+...+...+.+++.|+++||+|||+.++.+....+++. 
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~   83 (396)
T TIGR00882         4 FWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFA   83 (396)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            34444555666666667778887665 5689999999999999999999999999999999999999998777665532 


Q ss_pred             H---HhcCc-----cHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012965          117 I---TKHSP-----QYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGN  187 (452)
Q Consensus       117 l---~~~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~  187 (452)
                      .   ..+.+     .+..+.+.|++.|++.+...+.... +..|. ++++...+..+.    .    ..+|..+++.+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~----~----~~~g~~~g~~~~g  154 (396)
T TIGR00882        84 PFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEA-YIEKVSRNSNFEYGKARM----F----GCVGWALCASIAG  154 (396)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHH-HHHHhhhhcccccchhhh----h----cccHHHHHHHHHh
Confidence            1   12222     2334567788899888888777755 55554 222222222211    2    2345555556655


Q ss_pred             hhhcccCCCcchhhHHHHHHHHHHHHHHHhccccccCCCCcch----hHHHHHHHhhHHhhcchhHHHHHHHHHhhhchh
Q 012965          188 LLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESK----DLLTQFRGAAVAIASDEKIALLGAIQSLFEGSM  263 (452)
Q Consensus       188 ~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (452)
                      .+.+   ++|+.+|.+.+.+.++..++.....||+++++++++    +..++..++.++.+|||+++............ 
T Consensus       155 ~l~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~-  230 (396)
T TIGR00882       155 ILFS---IDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVANALGANASAFSLKLALELFRQRKFWMFVLYVVGVACV-  230 (396)
T ss_pred             hhhc---cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhcccccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHH-
Confidence            5443   477888988777666655444433333221111000    00011123456778888877665444333322 


Q ss_pred             hhhhhhhccccccCCC---CCc---hHHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhc
Q 012965          264 YTFVFLWTPALSPNDE---EIP---HGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLV  337 (452)
Q Consensus       264 ~~~~~~~~p~~~~~~~---~~~---~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (452)
                      +.....+.|.|.++..   +.+   .+...+...+...++....+++.||+|+|+.  +..+..+.++........... 
T Consensus       231 ~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~--l~~~~~l~~l~~~~~~~~~~~-  307 (396)
T TIGR00882       231 YDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNA--LLIAGTIMSVRIIGSSFATTA-  307 (396)
T ss_pred             HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh--HHHHHHHHHHHHHHHHhcCCh-
Confidence            2223334555543322   221   2566677777888888999999999998883  444444444433332211111 


Q ss_pred             CCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhh-hhhh------hhHHHHHHHhccccC
Q 012965          338 APSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNF-FRIP------LNIFVCVVLYNVDAF  410 (452)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~-~~~~------~~~~~~~~l~~~~~~  410 (452)
                                    +......++.+++..........+..+..|++.+++..+. .+..      .+..+++++.+..  
T Consensus       308 --------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~--  371 (396)
T TIGR00882       308 --------------LEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI--  371 (396)
T ss_pred             --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc--
Confidence                          2345556666666655545555677788888888876655 2321      3335556666653  


Q ss_pred             CchHHHHHHHHHHHH
Q 012965          411 PITVMFGMCSIFLLV  425 (452)
Q Consensus       411 ~~~~~~~~~~~~~~~  425 (452)
                      ++...+...+++..+
T Consensus       372 G~~~~f~~~~~~~~i  386 (396)
T TIGR00882       372 GFQGAYLVLGCIVLL  386 (396)
T ss_pred             ccHHHHHHHHHHHHH
Confidence            444444444444433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.91  E-value=9e-22  Score=191.22  Aligned_cols=313  Identities=13%  Similarity=0.109  Sum_probs=193.3

Q ss_pred             HHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccc----cCcch-HHHHHHHHHHHHH-HHhcCcc------HHHHH
Q 012965           61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK----QGRKR-ACVTYCLTYILSC-ITKHSPQ------YKILM  128 (452)
Q Consensus        61 ~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr----~Grr~-~l~~~~~~~~i~~-l~~~~~~------~~~l~  128 (452)
                      +.+.+++|+++.++|.+.+...+...+..|+.|+++||    +|||| .++.+....+++. ++...++      ...++
T Consensus        24 ~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  103 (437)
T TIGR00792        24 FFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAY  103 (437)
T ss_pred             HHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHH
Confidence            34446899999999999999999999999999999997    67755 5666777777664 4444443      45667


Q ss_pred             HHHHHHHhHhhhhhhhhhhhhhhhc----ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-ccCCCcchhhHH
Q 012965          129 IGRILGGIATSLLFSAFESWLVAEH----NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD-SFSLGPVAPFDA  203 (452)
Q Consensus       129 ~~r~l~G~~~~~~~~~~~~~~i~e~----~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~-~~~~~~~~~f~~  203 (452)
                      +.+++.+++.+...+...+ +..|.    ++|++..+.    ......+|..++..+.+.+...+.+ ...++|+..+.+
T Consensus       104 ~~~~~~~~~~~~~~~~~~a-l~~~~~~~~~~R~~~~~~----~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i  178 (437)
T TIGR00792       104 ITYILLGLFYSFVNIPYWS-LVPAITLDPRERESLSTF----RRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALV  178 (437)
T ss_pred             HHHHHHHHHHHhhcccHhh-CcccccCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHH
Confidence            7888888888876555444 44443    344444332    2233334444443333333222211 124578888888


Q ss_pred             HHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCc-
Q 012965          204 AACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIP-  282 (452)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-  282 (452)
                      .+++.++..+......||+++++++.++.+.+.++..++++++|+++.......+.....+. ...+.+.+.++..+.+ 
T Consensus       179 ~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  257 (437)
T TIGR00792       179 LALIGVVSLIICFFGTKERYSEIPKNIEKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNI-KNGVQVYYFTYVLGDPE  257 (437)
T ss_pred             HHHHHHHHHHHHHcCCEecCCCCCcccccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HcchhheeEeeecCChH
Confidence            77777766665555566654221111111123455667788888887766655555444333 3444555555444422 


Q ss_pred             -hHHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHH
Q 012965          283 -HGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTF  361 (452)
Q Consensus       283 -~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (452)
                       .+.......++.+++.++.+++.||+|+|+.  ...+..+..+...........              .+...+..++.
T Consensus       258 ~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~--~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~  321 (437)
T TIGR00792       258 LFSYMGSIAIVAGLIGVLLFPRLVKKFGRKIL--FAGGILLMVLGYLIFFFAGSN--------------LPLILVLIILA  321 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH--HHHHHHHHHHHHHHHHHcchh--------------HHHHHHHHHHH
Confidence             2445556678899999999999999998773  444444444333332221111              02445566777


Q ss_pred             HHHhhchhhHHHHHHhhcCC-------cccccchhhhhhhh
Q 012965          362 EACVGIFWPSIMKMRSQYIP-------EEARSTIMNFFRIP  395 (452)
Q Consensus       362 g~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~  395 (452)
                      +++.+...+..+++.+|..|       ++.+|+..|+.++.
T Consensus       322 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~  362 (437)
T TIGR00792       322 GFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFV  362 (437)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHH
Confidence            88888888889999998875       44567777877763

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.90  E-value=5e-21  Score=186.37  Aligned_cols=335  Identities=13%  Similarity=0.113  Sum_probs=191.6

Q ss_pred             hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccc-cCcchHHHHHHHHHHHHH-HHhcCccHHH-HHHHHHH
Q 012965           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCLTYILSC-ITKHSPQYKI-LMIGRIL  133 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr-~Grr~~l~~~~~~~~i~~-l~~~~~~~~~-l~~~r~l  133 (452)
                      .....++.+++|.+.++.+++.........+..+++|+++|| +||||++..+.++++++. +++++++... ++++|.+
T Consensus        35 ~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l  114 (489)
T PRK10207         35 GILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGT  114 (489)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            344445568899999999888777776677777889999999 999999999999999986 6677766444 5589999


Q ss_pred             HHhHhhhhhhhhhhhhhhhc-cccc-chhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHH
Q 012965          134 GGIATSLLFSAFESWLVAEH-NKRG-FEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIG  211 (452)
Q Consensus       134 ~G~~~~~~~~~~~~~~i~e~-~~r~-~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~  211 (452)
                      +|+|.|...|...+ ++.|. +++. ++.+..+ .+..+.+    +|..++|.+++++.++.  +||+.|.+.++..++.
T Consensus       115 ~~ig~g~~~~~~~~-li~~~~p~~~~~~~~~~~-~~~~~~n----ig~~~g~~l~g~l~~~~--gw~~~F~i~~i~~~~~  186 (489)
T PRK10207        115 IAVGNGLFKANPAS-LLSKCYPPKDPRLDGAFT-LFYMSIN----IGSLISLSLAPVIADKF--GYSVTYNLCGAGLIIA  186 (489)
T ss_pred             HHhccccccCCHHH-HHHHhcCCCchhhhcchh-HHHHHHH----HHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence            99999999888866 77775 2221 2222111 2333444    45555555555555544  5667787754433322


Q ss_pred             HHHHH--hccccccC-CCCc-chhHHH-------------------H---H-----------------H--HhhHHhhcc
Q 012965          212 MVIIL--SSWTENYG-DPSE-SKDLLT-------------------Q---F-----------------R--GAAVAIASD  246 (452)
Q Consensus       212 ~~~~~--~~~~~~~~-~~~~-~~~~~~-------------------~---~-----------------~--~~~~~~~~~  246 (452)
                      .....  ++..++.+ ++++ +.+...                   +   .                 .  ...++..|+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~~~~~r~  266 (489)
T PRK10207        187 LLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKLDKTGRN  266 (489)
T ss_pred             HHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            22221  11111111 1111 000000                   0   0                 0  000112232


Q ss_pred             hhHHHHHHH-HHhhhchhhhhhhhhccccccCC-------CCCchHHHHHHHHHHHHHHhHHHHHHhccCCCCch-----
Q 012965          247 EKIALLGAI-QSLFEGSMYTFVFLWTPALSPND-------EEIPHGFIFATFMLASMLGSSLASRLMARSPPRVE-----  313 (452)
Q Consensus       247 ~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~-----  313 (452)
                      |.+....+. ........+....+..+.+.++.       ...+++.....+.+..++..++.+++.||.++|+.     
T Consensus       267 r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~  346 (489)
T PRK10207        267 KMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMP  346 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcH
Confidence            322222111 12222222333334444444321       12233555566667777888888999999987751     


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhh
Q 012965          314 SYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFR  393 (452)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~  393 (452)
                      ..+..+..+.++++.............   +.  ....+..+...++.+++.+...|...+.+.+..|++.++.++|+.+
T Consensus       347 ~k~~~G~~l~~~~~~~~~~~~~~~~~~---~~--~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~  421 (489)
T PRK10207        347 MKFTLGMFLCSLGFLTAAAAGMWFADA---QG--LTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWF  421 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCC---CC--ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHH
Confidence            114445555454443322111100000   00  1122456678889999999999999999999999999999999987


Q ss_pred             hh--hhHHHHHHH
Q 012965          394 IP--LNIFVCVVL  404 (452)
Q Consensus       394 ~~--~~~~~~~~l  404 (452)
                      +.  .+..+++.+
T Consensus       422 l~~~ig~~lg~~l  434 (489)
T PRK10207        422 LTQAAAFLLGGYV  434 (489)
T ss_pred             HHHHHHHHHHHHH
Confidence            64  333444433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.90  E-value=9.4e-24  Score=191.99  Aligned_cols=334  Identities=15%  Similarity=0.129  Sum_probs=204.4

Q ss_pred             hHHHHHHHHHHHHhhhhh----hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHH
Q 012965           39 KNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL  114 (452)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~----~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i  114 (452)
                      .++.+.+.++..+.+.++    ....+.+.+.+|++++..|.+.+...+..++++|+.|+++|||+||+++..|..++.+
T Consensus        31 ~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~  110 (493)
T KOG1330|consen   31 PTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTL  110 (493)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHH
Confidence            445566666777766666    3355677789999999999888888888889999999999999999999999999999


Q ss_pred             HH-HHhcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 012965          115 SC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLV  190 (452)
Q Consensus       115 ~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~  190 (452)
                      +. +++++..+|++.++|.+.|+|.+...|.+.+ +++|.   ++|++..++    +......|.++|.+.    +..+.
T Consensus       111 Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s-~IaD~f~~~~Rs~~~~i----fy~~ipvGsglG~vv----gs~va  181 (493)
T KOG1330|consen  111 AVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPS-LIADSFPDDKRSRVLGI----FYFAIPVGSGLGYVV----GSVVA  181 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhhhcccchh-HhhhcCcchhhhHHHHH----hhhhcccccceeEEe----eeeec
Confidence            86 7799999999999999999999999999977 99987   455554442    444455555555544    44444


Q ss_pred             cccCCCcchhhHHHHHHHHHHHHHHHhccccccCC-CCcchh------HHHHHHHhhHHhhcchhHHHHHHHHHhhhchh
Q 012965          191 DSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGD-PSESKD------LLTQFRGAAVAIASDEKIALLGAIQSLFEGSM  263 (452)
Q Consensus       191 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (452)
                      ++.+| ||+.|...+++.++..++.....+|.++. .++.+.      ......++.+...+++.+....+.....+...
T Consensus       182 ~~~~~-Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~  260 (493)
T KOG1330|consen  182 SLTFW-WRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVI  260 (493)
T ss_pred             cCccc-eEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhc
Confidence            44555 88999999988888877776555554321 111111      11222344445555444433333333222222


Q ss_pred             hhhhhhhcccccc-----CCCCCchH-HHHHHHHHHHHHHhHHHHHHhccCCCC--chhHHHHH--HHHHHHHHHHHH--
Q 012965          264 YTFVFLWTPALSP-----NDEEIPHG-FIFATFMLASMLGSSLASRLMARSPPR--VESYMQIV--FVVSSVSLLLPI--  331 (452)
Q Consensus       264 ~~~~~~~~p~~~~-----~~~~~~~~-~~~~~~~i~~~~~~~~~g~l~dr~g~~--~~~~~~~~--~~~~~~~~~~~~--  331 (452)
                      -. ...|.|.+..     .+.+.+.+ ....+...++.+|.+.+|.++||+.|+  +.......  ....++...++.  
T Consensus       261 Gs-~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~  339 (493)
T KOG1330|consen  261 GS-LSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLF  339 (493)
T ss_pred             cc-cchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHH
Confidence            21 2445555442     12222334 444566677888888899888884221  10011111  111111111111  


Q ss_pred             HHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhc-hhhHHHHHHhhcCCcccccchhhhhhh
Q 012965          332 VTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGI-FWPSIMKMRSQYIPEEARSTIMNFFRI  394 (452)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~r~~~~g~~~~  394 (452)
                      ........      +     ....+.+++.|..... .+....-+..|.+|+++|.+++++...
T Consensus       340 ~~~~~~~~------s-----~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~  392 (493)
T KOG1330|consen  340 LFPAFTSS------S-----MIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTV  392 (493)
T ss_pred             HHHhhhhH------H-----HHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHH
Confidence            11111000      0     1222223333333222 235556678899999999999887665

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.90  E-value=5.4e-21  Score=207.50  Aligned_cols=311  Identities=15%  Similarity=0.048  Sum_probs=196.0

Q ss_pred             hhhHHHHHhhcCCCcch--hHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH----HHhcCccHHHHHHH
Q 012965           57 GPYVYYLYSTYGFGKGE--IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC----ITKHSPQYKILMIG  130 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~--~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~----l~~~~~~~~~l~~~  130 (452)
                      ..+.+.+.++++.+.+.  .+++.++..+...++++++|+++||+|||++++.+.++..+..    ++...++++.+++.
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  109 (1146)
T PRK08633         30 ILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAV  109 (1146)
T ss_pred             HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence            44445566667665433  5677777777777889999999999999999999887665532    23456789999999


Q ss_pred             HHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--------cCCCcch
Q 012965          131 RILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS--------FSLGPVA  199 (452)
Q Consensus       131 r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~--------~~~~~~~  199 (452)
                      |+++|++.+...++..+ ++.|.   ++|++..+..+.    +.    .+|.++++.+++.+.+.        .+| |.+
T Consensus       110 r~l~G~~~~~~~~~~~~-~i~~~~~~~~r~~~~~~~~~----~~----~ig~~lg~~l~~~l~~~~~~~~~~~~~~-~~~  179 (1146)
T PRK08633        110 TFLLGAQSAIYSPAKYG-IIPELVGKENLSRANGLLEA----FT----IVAILAGTALFSFLFESVNGNTPSEILG-RIA  179 (1146)
T ss_pred             HHHHHHHHHhhchHHHh-hhHHhcCcccchhhhhHHHH----HH----HHHHHHHHHHHHHHHHhhcccccccccc-chH
Confidence            99999999999888866 77776   456665554333    22    34444444444444432        112 222


Q ss_pred             hhHHHHHHHHHHHHHHHhccccccCCCCc-----chhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhcccc
Q 012965          200 PFDAAACFLAIGMVIILSSWTENYGDPSE-----SKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPAL  274 (452)
Q Consensus       200 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  274 (452)
                      .+....+...+..++.....|+.+.+.++     .....++..+..+.+++++.++...+...+.....+. ...+.|.+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  258 (1146)
T PRK08633        180 PAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQL-AQANFPAY  258 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH-HHHhhHHH
Confidence            22222222222222222244554322111     1112223344566677877777665554444443333 46677777


Q ss_pred             ccCCCCCch----HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccc
Q 012965          275 SPNDEEIPH----GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFS  350 (452)
Q Consensus       275 ~~~~~~~~~----~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (452)
                      ..+..+.+.    +.+.+...++.+++.++.+++.||+++++.  +.++..+.+++..........              
T Consensus       259 ~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------------  322 (1146)
T PRK08633        259 AKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGL--VPLGALGLALSLFLLPTAPSL--------------  322 (1146)
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccc--hhHHHHHHHHHHHHHHHhhhH--------------
Confidence            765555432    566677778899999999999999987762  434444443333333222221              


Q ss_pred             hhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          351 GSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       351 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                       +..++..++++++.+...+...+++.+..|++.||+++|+.++.
T Consensus       323 -~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~  366 (1146)
T PRK08633        323 -ASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFL  366 (1146)
T ss_pred             -HHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHH
Confidence             35566778888888888888999999999999999999887764

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.90  E-value=3.2e-21  Score=208.55  Aligned_cols=308  Identities=15%  Similarity=0.065  Sum_probs=191.9

Q ss_pred             hhHHHHHHHHhhhhhccccccccccccCcchHHHHHHH---HHHHHH-HHhcCccHHHHHHHHHHHHhHhhhhhhhhhhh
Q 012965           73 EIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCL---TYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESW  148 (452)
Q Consensus        73 ~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~---~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~  148 (452)
                      ..++..+...+...++++++|+++||+|||+++.....   ...+.. .+...++++.++++|+++|++.+...|+..+ 
T Consensus        53 ~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a-  131 (1140)
T PRK06814         53 LVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS-  131 (1140)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH-
Confidence            35666667777778999999999999999998644222   222222 3334589999999999999999999998877 


Q ss_pred             hhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHhccccccCC
Q 012965          149 LVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGD  225 (452)
Q Consensus       149 ~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  225 (452)
                      ++.+.   +++++..+..+.        +..+|.++++.+++++.+..  +|+..|....+..++. ++.....|+.+.+
T Consensus       132 ~l~~~~~~~~~~~a~~~~~~--------~~~ig~~igp~l~g~l~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  200 (1140)
T PRK06814        132 ILPDHLNKDELLGANALVEA--------GTFIAILLGTIIGGLATISG--NFVILVALLMGIAVLG-WLASLFIPKTGNA  200 (1140)
T ss_pred             hhHhhcCccccchhhHHHHH--------HHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHH-HHHHhhCCCCCCC
Confidence            77776   445554443322        34455566666666666544  4556663333333333 3333345544322


Q ss_pred             CCcc---hhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HHHHHHHHHHHHHHhH
Q 012965          226 PSES---KDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSS  299 (452)
Q Consensus       226 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~  299 (452)
                      +++.   .+..++.....+.+.+++.++...+...+....... ...+.|.|.++.++.+.   +.+.+...++.+++.+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~  279 (1140)
T PRK06814        201 APDLKIDRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAV-VLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSF  279 (1140)
T ss_pred             CCCCeeccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHH
Confidence            2111   112233445667788888888876666655555443 46789999887666654   6777888899999999


Q ss_pred             HHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhh-cCCCCcC--C--CCcccchhhHHHHHHHHHHHhhchhhHHHH
Q 012965          300 LASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFL-VAPSNVK--S--GGISFSGSLQLLGFCTFEACVGIFWPSIMK  374 (452)
Q Consensus       300 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  374 (452)
                      +.+++.||..+++.  +..+.++.++..+.+.+.... ..+....  -  -......+...+..+++|++.+...+...+
T Consensus       280 ~~g~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  357 (1140)
T PRK06814        280 LASKLSEGRITLLY--VPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFA  357 (1140)
T ss_pred             HHHHHhCCceeeee--ehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHH
Confidence            99999988765552  333333333332222221000 0000000  0  000011245566777888888888888999


Q ss_pred             HHhhcCCcccccchhhhhhhh
Q 012965          375 MRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       375 ~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      ++++..|++.||+++|+.++.
T Consensus       358 ~~~~~~p~~~~G~v~g~~~~~  378 (1140)
T PRK06814        358 ALQAWANPAHRARVIAANNVL  378 (1140)
T ss_pred             HHHhhCCcccceeeeHHHHHH
Confidence            999999999999999988764

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.89  E-value=5.6e-20  Score=165.10  Aligned_cols=303  Identities=18%  Similarity=0.204  Sum_probs=216.1

Q ss_pred             HhhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HH---hcCccHHH
Q 012965           51 AGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT---KHSPQYKI  126 (452)
Q Consensus        51 ~~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~---~~~~~~~~  126 (452)
                      +.+....+.+|.+.+.++++..|.+.+....+....+.+++.|++.+|+|+|+.++.++.++++++ +.   +...++..
T Consensus        27 ~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~  106 (422)
T COG0738          27 FITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGF  106 (422)
T ss_pred             HHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence            345555889999999999999999999888888888899999999999999999999999999986 43   35778999


Q ss_pred             HHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-----------
Q 012965          127 LMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS-----------  192 (452)
Q Consensus       127 l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~-----------  192 (452)
                      ++.+-++.|.|.+....++.+ +++..   ++..++....+..+        ++|..++|.+++.+..+           
T Consensus       107 FL~~lFila~Gi~~LetaaNp-~v~~lg~~~~a~~rlnl~q~fn--------~lGa~~gp~~g~~lils~~~~~~~~~~~  177 (422)
T COG0738         107 FLVALFILASGIGLLETAANP-YVTLLGKPESAAFRLNLAQAFN--------GLGAILGPLLGSSLILSGVALTMSAAQI  177 (422)
T ss_pred             HHHHHHHHHhhhHHHHhccch-HHHHhCCchhHHHHHHHHHHhh--------hhHHHHHHHHHHHHHHhhhhhccCHHHH
Confidence            999999999999999999878 76554   33455555555543        35555555555555431           


Q ss_pred             cC------CCcchhhHHHHHHHHHHHHHHH-hccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhh
Q 012965          193 FS------LGPVAPFDAAACFLAIGMVIIL-SSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYT  265 (452)
Q Consensus       193 ~~------~~~~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (452)
                      ..      -.++.+|...+...++..+... .+.|+.+..+++..+..   .....+++|+|+.+...+..++..+.-..
T Consensus       178 ~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~~---~~~~~~l~~~~~~~~gvl~~FlYVG~Eva  254 (422)
T COG0738         178 LAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGASG---SAGLSSLFQNKHLRLGVLAIFLYVGAEVA  254 (422)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccccccc---cchHHHHHhChHHHHHHHHHHHHHhHHHH
Confidence            00      1256777776655554444333 34455443322222111   11345678888888888777777666555


Q ss_pred             hhhhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 012965          266 FVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNV  342 (452)
Q Consensus       266 ~~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (452)
                       ...|.+.|+.+..+.+.   +...+....+.++|++++.++.+|+...+  .+.....+..+.+....+....      
T Consensus       255 -~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k--~Laf~a~~~ill~~~~~l~~g~------  325 (422)
T COG0738         255 -IGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEK--YLAFYALIAILLLLAVALIGGV------  325 (422)
T ss_pred             -HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH--HHHHHHHHHHHHHHHHHHhcCh------
Confidence             58889998887656544   45667778899999999999999995444  4555444444444444433332      


Q ss_pred             CCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCccc
Q 012965          343 KSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEA  384 (452)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~  384 (452)
                                ..+.+..+.|+..+..+|..++...+..|++.
T Consensus       326 ----------v~~~~l~~ig~F~simfPTIfslal~~l~~~t  357 (422)
T COG0738         326 ----------VALYALFLIGLFNSIMFPTIFSLALKNLGEHT  357 (422)
T ss_pred             ----------HHHHHHHHHHHHhHHHHHHHHHHHHhccCccc
Confidence                      56777888999999999999999999999443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.89  E-value=5.6e-21  Score=180.17  Aligned_cols=322  Identities=17%  Similarity=0.200  Sum_probs=189.1

Q ss_pred             hhcC--CCcchhH----HHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-H---HhcCccHHHHHHHHHHH
Q 012965           65 STYG--FGKGEIG----QLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-I---TKHSPQYKILMIGRILG  134 (452)
Q Consensus        65 ~~~g--~s~~~~g----~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l---~~~~~~~~~l~~~r~l~  134 (452)
                      +.+|  .+.++..    .+.+...+++++++...|.++||+|||..+..+.++..++. +   +...+++..++++|++.
T Consensus        47 ~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~  126 (485)
T KOG0569|consen   47 ERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIV  126 (485)
T ss_pred             HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            4456  4444444    44455667777888889999999999999999988887753 2   24578999999999999


Q ss_pred             HhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhcccCCCcchhhHHHHHHHHHHHH
Q 012965          135 GIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL-LVDSFSLGPVAPFDAAACFLAIGMV  213 (452)
Q Consensus       135 G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~-l~~~~~~~~~~~f~~~~~~~~~~~~  213 (452)
                      |+..|...... +.++.|..+.+.++. .+.....+..    +|..++..++.. +.. ..-.|.+.+....+..++...
T Consensus       127 Gl~~gl~~~~~-pmyl~E~sP~~~RG~-~g~~~~~~~~----~g~ll~~~~~l~~ilG-t~~~W~~l~~~~~i~~~~~l~  199 (485)
T KOG0569|consen  127 GLACGLSTGLV-PMYLTEISPKNLRGA-LGTLLQIGVV----IGILLGQVLGLPSLLG-TEDLWPYLLAFPLIPALLQLA  199 (485)
T ss_pred             HHHhHHHHHHH-HHHHhhcChhhhccH-HHHHHHHHHH----HHHHHHHHHccHHhcC-CCcchHHHHHHHHHHHHHHHH
Confidence            99999987776 668999854444432 1222333333    333333333221 111 112456666666666665554


Q ss_pred             HHHhccccccC-------CCCcchhHHHH-----------------H---------HHhhHHhhcchhHHH----HHHHH
Q 012965          214 IILSSWTENYG-------DPSESKDLLTQ-----------------F---------RGAAVAIASDEKIAL----LGAIQ  256 (452)
Q Consensus       214 ~~~~~~~~~~~-------~~~~~~~~~~~-----------------~---------~~~~~~~~~~~~~~~----~~~~~  256 (452)
                      ..+ +.||+++       +++++++..+.                 .         +.+.++++++++...    .....
T Consensus       200 ~l~-~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~  278 (485)
T KOG0569|consen  200 LLP-FLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVS  278 (485)
T ss_pred             HHh-cCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHH
Confidence            444 7788543       22222111100                 0         002345666644333    22233


Q ss_pred             Hhhhchhhhhhhhhcccccc-CCCCCch-HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 012965          257 SLFEGSMYTFVFLWTPALSP-NDEEIPH-GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTS  334 (452)
Q Consensus       257 ~~~~~~~~~~~~~~~p~~~~-~~~~~~~-~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~  334 (452)
                      ...+.........|...+++ .+...+. .......++...+.++++.++.||.|||+.  ++.+..++.+..++.....
T Consensus       279 ~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpL--ll~~~~~~~~~~~~~~~~~  356 (485)
T KOG0569|consen  279 FAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPL--LLISLSLMAVALLLMSIAL  356 (485)
T ss_pred             HHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH--HHHHHHHHHHHHHHHHHHH
Confidence            33333333334455555444 3333333 345556678899999999999999999983  5555444444443333222


Q ss_pred             hhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchh-hHHHHHHhhcCCcccccchhhhhhhh---hhHHHHH
Q 012965          335 FLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFW-PSIMKMRSQYIPEEARSTIMNFFRIP---LNIFVCV  402 (452)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~p~~~r~~~~g~~~~~---~~~~~~~  402 (452)
                      ...+.    ..  .+..+..+.+.+++.+.++... |+.+-+.+|++|++.|+++.+.....   .+..++.
T Consensus       357 ~l~~~----~~--~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~  422 (485)
T KOG0569|consen  357 FLSNS----FG--SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGF  422 (485)
T ss_pred             HHHHH----hh--hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHH
Confidence            22110    00  1112344566666777776664 99999999999999999998775543   4444443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.88  E-value=2.3e-19  Score=174.77  Aligned_cols=339  Identities=13%  Similarity=0.125  Sum_probs=197.5

Q ss_pred             HhhhhhhhhHHHHHh-h--cCCCcchhHHHHHHHHhhhhhccccccccccc-cCcchHHHHHHHHHHHHH-HHhcCccHH
Q 012965           51 AGDWLQGPYVYYLYS-T--YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCLTYILSC-ITKHSPQYK  125 (452)
Q Consensus        51 ~~~~~~~p~l~~i~~-~--~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr-~Grr~~l~~~~~~~~i~~-l~~~~~~~~  125 (452)
                      ++.....+.+|...+ +  +|++..+.|.+.+.......++.+++|+++|| +|||+++..+.++.+++. +.+++++++
T Consensus        24 ~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~  103 (475)
T TIGR00924        24 FSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPD  103 (475)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHh
Confidence            344444666665554 4  89999999999888888888999999999999 899999999999999986 668888889


Q ss_pred             HHHHHHHHHHhHhhhhhhhhhhhhhhhcccc---cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhH
Q 012965          126 ILMIGRILGGIATSLLFSAFESWLVAEHNKR---GFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFD  202 (452)
Q Consensus       126 ~l~~~r~l~G~~~~~~~~~~~~~~i~e~~~r---~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~  202 (452)
                      .++++|.+.|++.|...+...+ +++|..++   +++....+ .....    ..+|..+++.+++.+.++.  +|+..|.
T Consensus       104 ~~~~~~~l~g~g~g~~~~~~~~-~~a~~~~~~~~~~r~~~~~-~~~~~----~niG~~ig~~l~g~l~~~~--g~~~~f~  175 (475)
T TIGR00924       104 LIFYGLGTIAVGSGLFKANPSS-MVGKLYERGDMPRRDGGFT-LFYMS----INIGSFISPLLAGVIAENY--GYHVGFN  175 (475)
T ss_pred             HHHHHHHHHHhccccccCCHHH-HHHHhcCCCCcccccceeh-hHHHH----HHHHHHHHHHHHHHHHHhc--ChHHHHH
Confidence            9999999999999988887755 76665211   12222111 22223    3355555556666655433  5677787


Q ss_pred             HHHHHHHHHHHHHHhc---cccccCCCCc--ch--hHHHHH---------------------------------------
Q 012965          203 AAACFLAIGMVIILSS---WTENYGDPSE--SK--DLLTQF---------------------------------------  236 (452)
Q Consensus       203 ~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~--~~~~~~---------------------------------------  236 (452)
                      +.++..++..+.....   .++.++++++  .+  +..++.                                       
T Consensus       176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (475)
T TIGR00924       176 LAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFF  255 (475)
T ss_pred             HHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            7665444333222211   1111111110  00  000000                                       


Q ss_pred             ---HH-hhHHhhcch--hHHHHHHHHHhhhchhhhhhhhhccccccCC-------CCCchHHHHHHHHHHHHHHhHHHHH
Q 012965          237 ---RG-AAVAIASDE--KIALLGAIQSLFEGSMYTFVFLWTPALSPND-------EEIPHGFIFATFMLASMLGSSLASR  303 (452)
Q Consensus       237 ---~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~g~  303 (452)
                         .+ ..+...|++  .+..+ +.........|....+..+.+.++.       .+.+.+...+.+.+..++.+++..+
T Consensus       256 ~~~~~~~~~~~~~~~~~~~l~l-~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~  334 (475)
T TIGR00924       256 RLAFKPRLDAVARNKMYAYIVL-FLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAM  334 (475)
T ss_pred             HHHHhccCCHHHHhHHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHH
Confidence               00 000011111  11111 2222222233443344445444332       2234577888888777777766554


Q ss_pred             ----Hhcc-CCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhh
Q 012965          304 ----LMAR-SPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQ  378 (452)
Q Consensus       304 ----l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  378 (452)
                          +.|| .+.+....+..+..+.++++..........+      .......+..+...++.+++.....|..+++..|
T Consensus       335 ~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~  408 (475)
T TIGR00924       335 IWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFAD------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTK  408 (475)
T ss_pred             HHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcC------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence                4444 2222211135556666555555433221111      0011223567888999999999999999999999


Q ss_pred             cCCcccccchhhhhhhh--hhHHHHHHH
Q 012965          379 YIPEEARSTIMNFFRIP--LNIFVCVVL  404 (452)
Q Consensus       379 ~~p~~~r~~~~g~~~~~--~~~~~~~~l  404 (452)
                      ..|++.||+.+|+....  .+..+++.+
T Consensus       409 ~aP~~~~g~~~g~~~l~~~~g~~l~~~~  436 (475)
T TIGR00924       409 IAPQRLMGQMLGMWFLAQAMGSLLGGYL  436 (475)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998764  333444443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.87  E-value=3.3e-20  Score=182.93  Aligned_cols=327  Identities=17%  Similarity=0.154  Sum_probs=199.0

Q ss_pred             hhhhhHHHHHhhc-----CCCc--chhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHH
Q 012965           55 LQGPYVYYLYSTY-----GFGK--GEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKI  126 (452)
Q Consensus        55 ~~~p~l~~i~~~~-----g~s~--~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~  126 (452)
                      ...+....+.++.     ..+.  .+.+++.+...+++.+++++.|+++|++|||++++.+.+.+.++. ++++++|++.
T Consensus        65 ~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~  144 (513)
T KOG0254|consen   65 GISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQ  144 (513)
T ss_pred             cchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            4466665555432     2222  244788888888888999999999999999999999999999987 7799999999


Q ss_pred             HHHHHHHHHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHH
Q 012965          127 LMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAAC  206 (452)
Q Consensus       127 l~~~r~l~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~  206 (452)
                      ++++|++.|+|.|...... +.+++|..++..|..... ..+....+|..+|.    ..+.. .++..++||.++.+..+
T Consensus       145 l~~GR~l~G~g~G~~~~~~-piy~sEiap~~~RG~l~~-~~~l~~~~Gi~~~~----~~~~~-~~~~~~~Wr~~~~~~~i  217 (513)
T KOG0254|consen  145 LIVGRILTGLGVGGASVLA-PVYISEIAPAHIRGTLVS-LYQLFITIGILLGY----CINYG-TSKVYAGWRIPLGLALI  217 (513)
T ss_pred             HHHHHHHhccchhhhhhcc-hhhHhhcCChhhhHHHHH-HHHHHHHHHHHHHH----HHhhh-hccCCccHHHHHHHHHH
Confidence            9999999999999998776 658999844433333221 23333333333332    22222 21112678988887777


Q ss_pred             HHHHHHHHHHhccccccC------CCCcchhHHHHHHH----------------------------hhHHhhc--c-hhH
Q 012965          207 FLAIGMVIILSSWTENYG------DPSESKDLLTQFRG----------------------------AAVAIAS--D-EKI  249 (452)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~----------------------------~~~~~~~--~-~~~  249 (452)
                      ..++..+. ....||+++      +.+++++..++.+.                            ..+++.+  . ++.
T Consensus       218 ~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  296 (513)
T KOG0254|consen  218 PAVILALG-MLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRL  296 (513)
T ss_pred             HHHHHHHH-HHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHH
Confidence            66666555 446666432      22111111111100                            0111111  1 122


Q ss_pred             HHHHHHHHhhhchhhhhhhhhccccccCCCCCch-HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHH
Q 012965          250 ALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH-GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLL  328 (452)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~  328 (452)
                      ........+.+...+....+|.+.+++.....+. .......++...++..+...+.||+|||+  .++.+.....++..
T Consensus       297 ~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~--lll~s~~~m~~~~~  374 (513)
T KOG0254|consen  297 IIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRK--LLLFGAAGMSICLV  374 (513)
T ss_pred             HHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHhHHHHHHHHH
Confidence            2234444555556666667777777664332222 44445556778888888899999999998  35555555555555


Q ss_pred             HHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchh-hHHHHHHhhcCCcccccchhhhhhh
Q 012965          329 LPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFW-PSIMKMRSQYIPEEARSTIMNFFRI  394 (452)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~p~~~r~~~~g~~~~  394 (452)
                      +...........   ........+..+...+++-..++..+ |..+.+.+|.+|.+.|+++.++...
T Consensus       375 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~  438 (513)
T KOG0254|consen  375 ILAVVGVFALYY---PNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVA  438 (513)
T ss_pred             HHHHHHHHhccC---CCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHH
Confidence            544433321110   00112222444555555555555545 7788899999999999999887554

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.87  E-value=1.9e-19  Score=169.91  Aligned_cols=348  Identities=18%  Similarity=0.178  Sum_probs=217.6

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccC-cchHHHHHHHHHHHHH-
Q 012965           39 KNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQG-RKRACVTYCLTYILSC-  116 (452)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~G-rr~~l~~~~~~~~i~~-  116 (452)
                      +.++....++-.+..+...|+++...++.|.|..|+|.+.+...+...+..+++|.++||++ +||.+.+..++.++.. 
T Consensus         4 ~~rLs~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~   83 (400)
T PF03825_consen    4 KFRLSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALL   83 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHH
Confidence            44555555666666677789998888999999999999999999988888899999999986 5777777666666654 


Q ss_pred             HHhcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc-ccccchhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhcccC
Q 012965          117 ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAIL-SGLFGNLLVDSFS  194 (452)
Q Consensus       117 l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~-~~~l~~~l~~~~~  194 (452)
                      .....++++.++...++..+......|..++ +.-+. ++++...+..+..-+.+..    ++... +..+.+.    .+
T Consensus        84 ~~~~~~~f~~~~~~~~l~~~~~~p~~pl~ds-i~~~~~~~~~~~YG~iRlwGSiGf~----~~~~~~~~~~~~~----~~  154 (400)
T PF03825_consen   84 LLAFSSSFWWLFVIMLLFSFFFSPTMPLSDS-IALSYLGDRGKDYGRIRLWGSIGFI----VAALAFGGLLGGY----LG  154 (400)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHccHHHHHHH-HHHHHcccccCCCCcchhhhhHHHH----HHHHHHHHHHHhh----hc
Confidence            4567888998888888888887777777766 53333 4455555555554343332    22211 1112221    22


Q ss_pred             CCc-chhhHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccc
Q 012965          195 LGP-VAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPA  273 (452)
Q Consensus       195 ~~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  273 (452)
                      ++. ...+++.+...++...... ..|+.+.+++++++.+++..++..+++|+|+++.+.+...+.+... .....+.+.
T Consensus       155 ~~~~~~~~~i~~~~~~ll~~~~l-~lp~~~~~~~~~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~-~~~~~f~~~  232 (400)
T PF03825_consen  155 ISGTSLIFYIAAILSLLLAGFAL-FLPKTPPKRSAKESVKKLLGLDALKLLKNPRFLVFLLAAFLIGISH-AAYYTFFSI  232 (400)
T ss_pred             cccccHHHHHHHHHHHHHHHHHH-hCCCCccccccCCCcccccchHHHHHhcCccHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            221 2334444443333222222 3455442222222212222223346888998887766655554443 334667777


Q ss_pred             cccCCCCCc---hHHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccc
Q 012965          274 LSPNDEEIP---HGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFS  350 (452)
Q Consensus       274 ~~~~~~~~~---~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (452)
                      |+++..+.+   .+..++...+.+++.-...+++.+|+|.++  .+.++.....+=..+......+          ++..
T Consensus       233 yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~--ll~~a~~~~~vR~~l~a~~~~~----------~~~~  300 (400)
T PF03825_consen  233 YLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKW--LLLLALVAYAVRWLLYAYFSDP----------WPFI  300 (400)
T ss_pred             HHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHHHHHHHHHhcCC----------cHHH
Confidence            777654332   255666777889999999999999998776  3555554444444443332111          0100


Q ss_pred             hhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh-------hhHHHHHHHhcccc
Q 012965          351 GSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP-------LNIFVCVVLYNVDA  409 (452)
Q Consensus       351 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-------~~~~~~~~l~~~~~  409 (452)
                      .........+.|..++..+.....++.+..|++.|+++.++++..       .+..++|++.+..+
T Consensus       301 ~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g  366 (400)
T PF03825_consen  301 VALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG  366 (400)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence            112233345689999999999999999999999999999887753       23356677776544

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.87  E-value=1.4e-20  Score=179.92  Aligned_cols=303  Identities=12%  Similarity=0.078  Sum_probs=201.4

Q ss_pred             HHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHH-HHHhcCccHHHHHHHHHHHHhHhhh
Q 012965           62 YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILS-CITKHSPQYKILMIGRILGGIATSL  140 (452)
Q Consensus        62 ~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~-~l~~~~~~~~~l~~~r~l~G~~~~~  140 (452)
                      .+.+|.+....+.+.+.++.+++..++.++.|.+.||++-.+.+....+.+++- .+....+|++.+++.|++.|+.++.
T Consensus        71 g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~  150 (495)
T KOG2533|consen   71 GLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESG  150 (495)
T ss_pred             CCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcc
Confidence            445888888888887777777766688889999999999888888888888774 4666799999999999999999999


Q ss_pred             hhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc----ccCCCcchhhHHHHHHHHHHHH
Q 012965          141 LFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD----SFSLGPVAPFDAAACFLAIGMV  213 (452)
Q Consensus       141 ~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~----~~~~~~~~~f~~~~~~~~~~~~  213 (452)
                      .+|.... +++.+   ++|+.+.+....    ...+|+    +++++++..+.+    ..-.+||+.|++.+++.++..+
T Consensus       151 ~wP~~~~-~lg~wy~~~e~g~r~~~~~a----~~~~g~----i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi  221 (495)
T KOG2533|consen  151 GWPGVVA-ILGNWYGKSERGLRMGIWYA----SASLGN----IFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGI  221 (495)
T ss_pred             cchHHHH-HHHhhcChhhhhhhHHHHHH----hcchhh----HHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHh
Confidence            9999966 88877   556666664333    333344    444444443221    1234778889999988888877


Q ss_pred             HHHhccccccCCC---Ccchh--HHH-------------HHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccc
Q 012965          214 IILSSWTENYGDP---SESKD--LLT-------------QFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALS  275 (452)
Q Consensus       214 ~~~~~~~~~~~~~---~~~~~--~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  275 (452)
                      +.++.+|+++.+.   ++.++  ..+             ......++.+++|+.|..++...+.....+. ..+|+|.++
T Consensus       222 ~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~-~~~~lpl~l  300 (495)
T KOG2533|consen  222 VVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYG-FSYWLPLYL  300 (495)
T ss_pred             eEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhcccc-HHHHHHHHH
Confidence            7776777655421   11110  001             1123456788999999999999888888776 599999999


Q ss_pred             cCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCC---CCchhHHHHHHHHHHHHH-HHHHHHhhhcCCCCcCCCCcc
Q 012965          276 PNDEEIPH---GFIFATFMLASMLGSSLASRLMARSP---PRVESYMQIVFVVSSVSL-LLPIVTSFLVAPSNVKSGGIS  348 (452)
Q Consensus       276 ~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  348 (452)
                      ++..+.+.   ..+.....++++++.+++|.++||..   .++. .......+..... .........            
T Consensus       301 ~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~-~~~~~~~~~~~~g~~~l~~~~~~------------  367 (495)
T KOG2533|consen  301 KSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRL-LFIVFLCLYAIIGAISLLAAAVL------------  367 (495)
T ss_pred             HcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHHHHHhhccc------------
Confidence            88544543   56667778999999999999999952   2221 1112222222111 221111111            


Q ss_pred             cchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhh
Q 012965          349 FSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMN  390 (452)
Q Consensus       349 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g  390 (452)
                         ............+.....+......++....+.|.....
T Consensus       368 ---~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~  406 (495)
T KOG2533|consen  368 ---PGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTV  406 (495)
T ss_pred             ---hHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHH
Confidence               122333333444455566777888888887766554443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.87  E-value=4.4e-19  Score=169.57  Aligned_cols=346  Identities=13%  Similarity=-0.001  Sum_probs=194.6

Q ss_pred             hhhhhhHHHHHhhcCCCcchhHHH--HHHHHhhhhhccccc-cccccccCcchHHHHHHHHH-HH-HHHHh---cCcc-H
Q 012965           54 WLQGPYVYYLYSTYGFGKGEIGQL--FIAGFGSSMLFGTIV-GSLADKQGRKRACVTYCLTY-IL-SCITK---HSPQ-Y  124 (452)
Q Consensus        54 ~~~~p~l~~i~~~~g~s~~~~g~~--~~~~~~~~~l~~~~~-G~l~Dr~Grr~~l~~~~~~~-~i-~~l~~---~~~~-~  124 (452)
                      ++..|++|...+|.|.|.+++|..  ....+....+.+|+. ++..||+||||..++.+.+. +. ....+   ...+ .
T Consensus        18 ~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~   97 (390)
T TIGR02718        18 GLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGA   97 (390)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhH
Confidence            444899999999999999999986  355677777888888 55899999999976665332 22 11122   2222 3


Q ss_pred             HHHHHHHHHHHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHH
Q 012965          125 KILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAA  204 (452)
Q Consensus       125 ~~l~~~r~l~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~  204 (452)
                      ..++..-++.++..+...+..+. +..|.. |++..+..+.    ....|..+|..+++...+.+.++  ++||.+|++.
T Consensus        98 ~~~~~~~~~~~~~~a~~d~~~d~-~~~~~~-~~~~~~~~~~----~~~~g~~lG~~~g~~~~~~l~~~--~gw~~~f~~~  169 (390)
T TIGR02718        98 GWAVGLLACASLASATQDIATDG-MAAEHF-NGRTLAKGNA----VQIAGVMIGFFGGGAGTLVLFGK--FGQRPAFLLV  169 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHhC-CHhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHH
Confidence            33444445555666666666655 444442 2232232222    33344556666666666666643  4677889888


Q ss_pred             HHHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch-
Q 012965          205 ACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH-  283 (452)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-  283 (452)
                      +++.++.........|++++++++++    +..++.++.+|+|+.+.......+....... ...+.+.|.+| .+.+. 
T Consensus       170 a~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~~-~G~s~~  243 (390)
T TIGR02718       170 ACVPLASLVCVLWLKDRAVASPEAPL----ARRASLFRFFRRPLAWSLLALALLSAMTAVS-GFGLSKLYLVD-AGWPLE  243 (390)
T ss_pred             HHHHHHHHHHHHHcCCCCcCccccch----hhHHHHHHHHcCcCHHHHHHHHHHHHHHHHH-HHHHhhHHHHh-cCCCHH
Confidence            87766555544433333222111111    1123455677888776655554444443333 35566777765 46655 


Q ss_pred             --HHHHHHHH-HHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHH
Q 012965          284 --GFIFATFM-LASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCT  360 (452)
Q Consensus       284 --~~~~~~~~-i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (452)
                        +....... ...+++..+.|++.||+|+|+.  +..+..+................         ............+
T Consensus       244 ~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~--l~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~  312 (390)
T TIGR02718       244 WIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRT--FILGVGLAGSLALLWFAQAAFWL---------APGIAVAWSCSAF  312 (390)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHccc---------CCcHHHHHHHHHH
Confidence              44444444 3566778899999999998873  33333333222222111111100         0001122333344


Q ss_pred             HHHHhhchhhHHHHHHhhcCCc-ccccchhhhhhhh------hhHHHHHHHhccccCCchHHHHHHHHHHHHH
Q 012965          361 FEACVGIFWPSIMKMRSQYIPE-EARSTIMNFFRIP------LNIFVCVVLYNVDAFPITVMFGMCSIFLLVA  426 (452)
Q Consensus       361 ~g~~~~~~~~~~~~~~~~~~p~-~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  426 (452)
                      .++..+...+...+...+..++ +.+++.++..+..      .+..+++.+.+..  ++...+..++++.+++
T Consensus       313 ~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~--G~~~~f~~~~~~~l~a  383 (390)
T TIGR02718       313 GSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRF--GYAGGFLSGTVLAVLA  383 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHH
Confidence            4556677777777777777766 7789888776653      3445566666653  3444444444444443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.87  E-value=2.6e-19  Score=166.55  Aligned_cols=330  Identities=13%  Similarity=0.097  Sum_probs=199.6

Q ss_pred             cchhhHHHHHHHHHHHHhhhhh--hhhHHHHHhhcCCCcch-hHHHHHHHHhhhhhccccccccccccCcchHHHHHHHH
Q 012965           35 FNSFKNNYLLVYSLMMAGDWLQ--GPYVYYLYSTYGFGKGE-IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLT  111 (452)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~--~p~l~~i~~~~g~s~~~-~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~  111 (452)
                      .+.+++..+.+|....+.+.=.  .-..|.+.+|+|+|.+| .|.+++..+....+..++.|+++||+|.|+++..+.+.
T Consensus        22 ~~~W~~~~~~lC~fGF~~e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~  101 (511)
T TIGR00806        22 LKSWRVLVLYLCFYGFMAQFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALS  101 (511)
T ss_pred             hcchhHHHHHHHHHHHHHHhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            3455555555555544432211  33346777899999999 88887777777778888999999999999999999999


Q ss_pred             HHHHH-HHhcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012965          112 YILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGN  187 (452)
Q Consensus       112 ~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~  187 (452)
                      +++.. +.+++++++.+.+.|++.|++.|... +... ++..+   ++|++..+.    .    ..|..+|.++++++++
T Consensus       102 Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~s-yI~~WfP~kER~ratsi----~----~sg~~vG~~Ia~~L~q  171 (511)
T TIGR00806       102 FVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSS-YIFSLVPPSRYQRAAAY----S----RAAVLLGVFLSSVLGQ  171 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHCCHHHHHHHHHH----H----HHHHHHHHHHHHHHHH
Confidence            99976 77899999999999999999999998 6545 77777   444444332    2    3344455566666666


Q ss_pred             hhhcccCCCcchhh---HHHHHHHHHHHHHHHhccccccC------C---------------CCc---ch--------hH
Q 012965          188 LLVDSFSLGPVAPF---DAAACFLAIGMVIILSSWTENYG------D---------------PSE---SK--------DL  232 (452)
Q Consensus       188 ~l~~~~~~~~~~~f---~~~~~~~~~~~~~~~~~~~~~~~------~---------------~~~---~~--------~~  232 (452)
                      .+.   +++||...   ++......+++++.+ .+|..++      +               +++   ..        ..
T Consensus       172 ll~---s~gWr~y~~Ln~Isl~s~~~a~~~a~-~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (511)
T TIGR00806       172 LLV---TLGWISYSTLNIISLVFMTFSVFLAL-FLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSF  247 (511)
T ss_pred             HHH---hcCchhHHHHHHHHHHHHHHHHHHHH-hCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHH
Confidence            522   23454433   233322223222222 3331110      0               000   00        00


Q ss_pred             HHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCC----CCchHHHHHHHHHHHHHHhHHHHHHhccC
Q 012965          233 LTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDE----EIPHGFIFATFMLASMLGSSLASRLMARS  308 (452)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~g~l~dr~  308 (452)
                      .+......+...+|++.+...+-..+...+ |..+.+|.-.+-++..    +. -|.+-++..+.+.+..+..|++-.++
T Consensus       248 ~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g-~~qv~~Y~Q~LW~~v~~~~~~y-NG~veA~~tllga~~a~~ag~~~~~w  325 (511)
T TIGR00806       248 LVRMLSELVTIYRNPQLLLWSLWWVFNSAG-YYLITYYVHTLWGTLDESLNKY-NGAVDAASTLLGAITSFIAGFVNIRW  325 (511)
T ss_pred             HHHHHHHHHHHhcCcchhhhhHHHHHHhhH-HHHHHHHHHHHHHHcCCCcccc-CCHHHHHHHHHHHHHHHHHHhhcCCc
Confidence            112233444556666665555444443333 3333444333222111    12 25666666677788888899886665


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccch
Q 012965          309 PPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTI  388 (452)
Q Consensus       309 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~  388 (452)
                      .+.....+.+...+.+..+++.....+               .|...++.++++..+....++....+++....+.-|..
T Consensus       326 ~~~~~l~l~v~s~~~~gll~~m~~t~~---------------Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLv  390 (511)
T TIGR00806       326 ARWSKLLIAVVSAIQAGLVFWMSQSHD---------------IWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALV  390 (511)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhhhcccc---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEE
Confidence            332221222222222222222222112               26889999999999999999999999999888888999


Q ss_pred             hhhhhhh
Q 012965          389 MNFFRIP  395 (452)
Q Consensus       389 ~g~~~~~  395 (452)
                      .|++++.
T Consensus       391 FGiNtfv  397 (511)
T TIGR00806       391 FGINTFV  397 (511)
T ss_pred             EecHHHH
Confidence            9986653

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.86  E-value=7.6e-19  Score=155.49  Aligned_cols=320  Identities=15%  Similarity=0.129  Sum_probs=222.8

Q ss_pred             hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHh
Q 012965           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGI  136 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~l~~~~~~~~~l~~~r~l~G~  136 (452)
                      +|.++++.+|+|+|.++.|.+.+...+.-.+++|+..+++.|+|.++.+..++++.+++.+.-...+.+.++.+-.+.|.
T Consensus        32 gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~~~~~L~~gt~l~G~  111 (395)
T COG2807          32 GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLGGLPLLFLGTLLAGA  111 (395)
T ss_pred             hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence            89999999999999999999999998888899999999999999999999999999999876433488889999999999


Q ss_pred             HhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHH
Q 012965          137 ATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIIL  216 (452)
Q Consensus       137 ~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~  216 (452)
                      +.+........ .+.++-+  ++.+.....++....++..+++.+.+++...    . .+||.....-+...++.++.- 
T Consensus       112 gIav~nVLLPs-lIK~~Fp--k~~~~mtglYs~sl~~~aaLaa~lavpla~~----~-~gW~~aL~~WAl~allAl~~W-  182 (395)
T COG2807         112 GIAVINVLLPS-LIKRDFP--KRVGLMTGLYSTSLGAGAALAAALAVPLAQH----S-GGWRGALGFWALLALLALLIW-  182 (395)
T ss_pred             hHHHHHHhhhH-HHHhhcc--cchhhHHhHHHHHHHHHHHHHhhhhhHHHHh----h-ccHHHHHHHHHHHHHHHHHHH-
Confidence            99998877744 6666522  2333344467777777777777777777654    2 356666666565555544432 


Q ss_pred             hccccc-cCC-CCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCC-CCCc-hHHHHHHHHH
Q 012965          217 SSWTEN-YGD-PSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPND-EEIP-HGFIFATFML  292 (452)
Q Consensus       217 ~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~-~~~~~~~~~i  292 (452)
                        +|.. +++ .+.+.+     ..+...++|+|..|.+.+...+.....|. ...|+|.++.|. .+.. .|...+...+
T Consensus       183 --lPq~~r~~~~~~~~~-----~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~-~~~WLP~ili~~G~sa~~aG~llsl~~l  254 (395)
T COG2807         183 --LPQALREQAASIATK-----LVSVRKVWRSPLAWQVTLFMGLQSLLYYI-VIGWLPAILIDRGLSAAEAGSLLSLMQL  254 (395)
T ss_pred             --hhhcccccccccccc-----cccccccccCchhHHHHHHHHhhHHHHHH-HHHHHHHHHHHcCCCHHHhhhHHHHHHH
Confidence              3332 111 111111     11223578999999999998888888776 699999988653 3332 2788888889


Q ss_pred             HHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHH
Q 012965          293 ASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSI  372 (452)
Q Consensus       293 ~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  372 (452)
                      .+++.++....+.+|...++. .......+..++.+...+.+..                ..+...++.|++.|..+|..
T Consensus       255 ~~~~~~ll~P~la~R~~n~r~-~~~~~~~~~l~G~~G~~~~P~~----------------~~~lw~~llG~G~G~~F~la  317 (395)
T COG2807         255 AQLPTALLIPLLARRSKNQRP-LVVLALLLMLVGLVGLLLAPGQ----------------LPILWALLLGLGQGGAFPLA  317 (395)
T ss_pred             HHHHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHHHHHHhhhh----------------HHHHHHHHHhCccchHHHHH
Confidence            999999999999998644442 2333333333333333333322                22333688999999999999


Q ss_pred             HHHHhhcCCcccccch-hhhhhh------hhhHHHHHHHhccccC
Q 012965          373 MKMRSQYIPEEARSTI-MNFFRI------PLNIFVCVVLYNVDAF  410 (452)
Q Consensus       373 ~~~~~~~~p~~~r~~~-~g~~~~------~~~~~~~~~l~~~~~~  410 (452)
                      ...+.+..++.+.+.. .|+.+-      +.++...+.+.|.++.
T Consensus       318 L~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gs  362 (395)
T COG2807         318 LTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGS  362 (395)
T ss_pred             HHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCC
Confidence            9999988877664432 333332      3566667777777553

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.86  E-value=3.6e-18  Score=167.31  Aligned_cols=317  Identities=15%  Similarity=0.110  Sum_probs=180.9

Q ss_pred             HHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccc-cCcchHHHHHHHHHHHHH-HHhcCc-cHHHHHHHHHHHHhH
Q 012965           61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCLTYILSC-ITKHSP-QYKILMIGRILGGIA  137 (452)
Q Consensus        61 ~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr-~Grr~~l~~~~~~~~i~~-l~~~~~-~~~~l~~~r~l~G~~  137 (452)
                      .++.+++|++.++.+++.+..........+++|+++|| +|||+++..+.++.+++. ++++++ +.+.+.++|.++|++
T Consensus        46 ~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig  125 (500)
T PRK09584         46 VYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVG  125 (500)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            34458899999888877665544444445679999999 599999999999998875 566664 566777889999999


Q ss_pred             hhhhhhhhhhhhhhhc-c-cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHH---
Q 012965          138 TSLLFSAFESWLVAEH-N-KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM---  212 (452)
Q Consensus       138 ~~~~~~~~~~~~i~e~-~-~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~---  212 (452)
                      .|...+...+ ++.|. + ++.++.+..    + ....+..+|..++|.+++++.++  ++||+.|.+.++...+..   
T Consensus       126 ~g~~~~~~~~-l~~~~f~~~~~~~~~~~----~-~~~~~~~iG~~~gp~i~g~l~~~--~g~~~~F~i~~i~~~i~~i~~  197 (500)
T PRK09584        126 NGLFKANPSS-LLSTCYEKDDPRLDGAF----T-MYYMSINIGSFFSMLATPWLAAK--YGWSVAFALSVVGMLITVVNF  197 (500)
T ss_pred             hhcccCCHHH-HHHHhcCCCchhhhhcc----h-HHHHHHHHHHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHHH
Confidence            9988877655 77775 2 222222211    1 12234456666677777777654  456777877665333322   


Q ss_pred             HHHHhccccccCCCCc-chhHHHH---------------------------------------HHH--hhHHhhcchhHH
Q 012965          213 VIILSSWTENYGDPSE-SKDLLTQ---------------------------------------FRG--AAVAIASDEKIA  250 (452)
Q Consensus       213 ~~~~~~~~~~~~~~~~-~~~~~~~---------------------------------------~~~--~~~~~~~~~~~~  250 (452)
                      +......+|+.+++++ +.+..+.                                       .++  ..++.. +++.+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  276 (500)
T PRK09584        198 AFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAFAMKGAA-RRKMI  276 (500)
T ss_pred             HHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhcCHHH-HHHHH
Confidence            2222233332111111 0000000                                       000  000111 12222


Q ss_pred             HHHHHHHhhhchhhhhhhhhcccccc----C-------CCCCchHHHHHHHHHHHHHHhHHHHHHhccCCCC--chhHHH
Q 012965          251 LLGAIQSLFEGSMYTFVFLWTPALSP----N-------DEEIPHGFIFATFMLASMLGSSLASRLMARSPPR--VESYMQ  317 (452)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~p~~~~----~-------~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~--~~~~~~  317 (452)
                      .. +...+.....+. .....|..+.    +       +...+.+...+...+..++..++.+++-+|.++|  ..+.+.
T Consensus       277 ~~-~~~~~~~i~f~~-~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~  354 (500)
T PRK09584        277 VA-FILMLEAIIFFV-LYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFA  354 (500)
T ss_pred             HH-HHHHHHHHHHHH-HHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHH
Confidence            21 111111222121 2222333211    1       1122356677777777666666664444444433  222466


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhh
Q 012965          318 IVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRI  394 (452)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~  394 (452)
                      ++..+.++++..........+++    .  ....+......++.+++.....|...+++.+..|++.||+.+|....
T Consensus       355 ~G~~l~~l~f~~l~~~~~~~~~~----~--~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l  425 (500)
T PRK09584        355 IGMVLCSGAFLVLPLGAKFANDA----G--IVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFL  425 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCC----C--ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            66777777766654433321100    1  12224677788999999999999999999999999999999998654

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.86  E-value=3.7e-20  Score=176.72  Aligned_cols=235  Identities=22%  Similarity=0.200  Sum_probs=176.5

Q ss_pred             hhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHh--cCccHHHHHHHHHHHHhHhhhh
Q 012965           65 STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK--HSPQYKILMIGRILGGIATSLL  141 (452)
Q Consensus        65 ~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~--~~~~~~~l~~~r~l~G~~~~~~  141 (452)
                      .++++|+.|.|.+++..+.+..+...+.|+++||+|.|+++..+.++.+++. +..  ...+++.+++.|+++|++.|..
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~  145 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL  145 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence            4688999999999999988888888999999999999999999999999975 553  4456678899999999999999


Q ss_pred             hhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHhc
Q 012965          142 FSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSS  218 (452)
Q Consensus       142 ~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  218 (452)
                      +|+... +.++|   ++|++..+        ....|..+|.+++.++++.+.+. .+||+..|++.+.+.++..++....
T Consensus       146 ~pa~~~-i~~~W~P~~Ers~~~a--------il~~g~q~g~v~~mp~sg~lc~s-~~GW~sifY~~g~~g~i~~~~w~~~  215 (466)
T KOG2532|consen  146 FPAIGS-ILAKWAPPNERSTFIA--------ILTAGSQLGTIITMPVSGLLCES-SLGWPSIFYVFGIVGLIWFILWFLF  215 (466)
T ss_pred             Hhhhhc-eeeeECCHHHHHHHHH--------HHHHHHHHHHHHHHHhHHHHhcc-CCCCchHHHHHHHHHHHHHHHHHHH
Confidence            999866 77877   34555433        22334557777777788887764 5788899999888777655443333


Q ss_pred             cccccCCCC---cchhH--H-----HH----HHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch-
Q 012965          219 WTENYGDPS---ESKDL--L-----TQ----FRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH-  283 (452)
Q Consensus       219 ~~~~~~~~~---~~~~~--~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-  283 (452)
                      ..|++.+++   ++|..  .     ++    ...+++++++++.+|...+.........+. ...|.|.|+++.++.+. 
T Consensus       216 ~~d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~-l~~y~PtY~~~VL~f~v~  294 (466)
T KOG2532|consen  216 YSDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYL-LLTYLPTYLKEVLGFDVR  294 (466)
T ss_pred             hcCCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHhCCChh
Confidence            333222211   11110  0     00    122577889999999888777777777665 69999999998887754 


Q ss_pred             --HHHHHHHHHHHHHHhHHHHHHhccCCC
Q 012965          284 --GFIFATFMLASMLGSSLASRLMARSPP  310 (452)
Q Consensus       284 --~~~~~~~~i~~~~~~~~~g~l~dr~g~  310 (452)
                        |...++..+.+.+..+++|.++||..+
T Consensus       295 ~~G~~salP~l~~~~~k~~~g~lsD~l~~  323 (466)
T KOG2532|consen  295 ETGFLSALPFLAMAIVKFVAGQLSDRLTF  323 (466)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence              788888889999999999999999865

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.85  E-value=2.4e-19  Score=173.32  Aligned_cols=332  Identities=14%  Similarity=0.162  Sum_probs=231.0

Q ss_pred             chhhHHHHHHHHHHHH-hhhhh---hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHH
Q 012965           36 NSFKNNYLLVYSLMMA-GDWLQ---GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLT  111 (452)
Q Consensus        36 ~~~~~~~~~~~~~~~~-~~~~~---~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~  111 (452)
                      ..+.|.+....++... .+++.   +.+.+.+.++++.+.++++++.++......+.+|+.+.+.||+|.|++.+.+.++
T Consensus        41 GG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v  120 (509)
T KOG2504|consen   41 GGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLV  120 (509)
T ss_pred             CCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHH
Confidence            4456666555555544 34443   5566788899999999999999999988889999999999999999999999999


Q ss_pred             HHHHH-HHhcCccHHHHHHH-HHHHHhHhhhhhhhhhhhhhhhc--ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012965          112 YILSC-ITKHSPQYKILMIG-RILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGN  187 (452)
Q Consensus       112 ~~i~~-l~~~~~~~~~l~~~-r~l~G~~~~~~~~~~~~~~i~e~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~  187 (452)
                      ..++. +.++++++|.+++. -++.|+|.+..+..... ++..+  ++|+..        +.....|.++|..+-|.+..
T Consensus       121 ~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiv-iv~~YF~kkR~lA--------~Gia~~GsG~G~~~~~~l~~  191 (509)
T KOG2504|consen  121 AALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVV-ILGTYFEKKRALA--------TGIAVSGTGVGTVVFPPLLK  191 (509)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhh-hhhhHhHHHHHHH--------HhhhhccCCcceeeHHHHHH
Confidence            99997 67999999877655 78999999999888755 77777  444443        33455678899999999999


Q ss_pred             hhhcccCCCcchhhHHHHHHHHHHHHHHHhccccccC-----------------------------CCCcch--------
Q 012965          188 LLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYG-----------------------------DPSESK--------  230 (452)
Q Consensus       188 ~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~--------  230 (452)
                      .+.+..||  |..+++.+.+.+-.........|...+                             +.+...        
T Consensus       192 ~l~~~~G~--r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (509)
T KOG2504|consen  192 YLLSKYGW--RGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLA  269 (509)
T ss_pred             HHHHHhCc--HHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchh
Confidence            98876655  455655554444333333333340000                             000000        


Q ss_pred             ------hHHH--HHHHhh----HHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HHHHHHHHHHHH
Q 012965          231 ------DLLT--QFRGAA----VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASM  295 (452)
Q Consensus       231 ------~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~  295 (452)
                            +..+  ..+...    .++++++.++.+.+...+...+.+. ...++|.+.++ .+.+.   +...++.++..+
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~-p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i  347 (509)
T KOG2504|consen  270 TLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNV-PFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDI  347 (509)
T ss_pred             hhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHH-HHHHHHHHHhh-cCCChhhhHHHHHHHHHhhh
Confidence                  0000  111111    4678888888888877777777555 47778887763 33332   678888899999


Q ss_pred             HHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHH
Q 012965          296 LGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKM  375 (452)
Q Consensus       296 ~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  375 (452)
                      +++++.|++.|+...++.....++.+..++...........               +.......++|+..|.........
T Consensus       348 ~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~---------------~~l~~~~~~fG~~~g~~~~l~~~i  412 (509)
T KOG2504|consen  348 IGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTY---------------VGLIVFSILFGFCVGSFSSLTPVI  412 (509)
T ss_pred             hhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccH---------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999987555333344444444444332222222               366777888899999877888889


Q ss_pred             HhhcCCcccccchhhhhhhh
Q 012965          376 RSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       376 ~~~~~p~~~r~~~~g~~~~~  395 (452)
                      +.|..+.++-..+.|+..+.
T Consensus       413 ~~~~~g~~~l~~a~Gl~l~~  432 (509)
T KOG2504|consen  413 LVDLVGLEKLSNAYGLLLLF  432 (509)
T ss_pred             HHHHcChhhcchHHHHHHHH
Confidence            99999999988888886664

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.85  E-value=1.2e-17  Score=159.57  Aligned_cols=380  Identities=15%  Similarity=0.095  Sum_probs=216.7

Q ss_pred             HHhhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhcccccccccc----ccCcchHHHHHHHHH-HHHH-HHhcCcc
Q 012965           50 MAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLAD----KQGRKRACVTYCLTY-ILSC-ITKHSPQ  123 (452)
Q Consensus        50 ~~~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~D----r~Grr~~l~~~~~~~-~i~~-l~~~~~~  123 (452)
                      .++..++.++++++.+++|.+..+.+.+.....+.+.+..|+.|+++|    |+||||.++.+..+. +++. +++++++
T Consensus        17 q~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~   96 (477)
T TIGR01301        17 QFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAAD   96 (477)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCch
Confidence            345566688888888999999999999999999999999999999999    599999998864444 4454 5566665


Q ss_pred             HH-----------------HHHHHHHHHHhHhhhhhhhhhhhhhhhcc-cccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012965          124 YK-----------------ILMIGRILGGIATSLLFSAFESWLVAEHN-KRGFEQQWLSITFSKAIFLGNGLVAILSGLF  185 (452)
Q Consensus       124 ~~-----------------~l~~~r~l~G~~~~~~~~~~~~~~i~e~~-~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l  185 (452)
                      .+                 ..+++-.+..++.....+...+ +++|.. ++.++.+......+....+|..+|..++...
T Consensus        97 ~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rA-LiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~  175 (477)
T TIGR01301        97 IGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRA-FLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYS  175 (477)
T ss_pred             hhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43                 2233333444577766666655 788772 2222222222223333444444444444332


Q ss_pred             h--h---hh----hcccCCCcchhhHHHHHHHHHHHHHHHhccccccCCCCcc-------hh----HHHHHHHhhHHhhc
Q 012965          186 G--N---LL----VDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSES-------KD----LLTQFRGAAVAIAS  245 (452)
Q Consensus       186 ~--~---~l----~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----~~~~~~~~~~~~~~  245 (452)
                      .  .   ..    .+....+.+..|.+.+++.++...+.....+|++..+++.       +.    ..+..++-++.+.+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  255 (477)
T TIGR01301       176 GLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHGEEAFFGELFGAFKY  255 (477)
T ss_pred             hHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccchhhhHHHHHHHHHH
Confidence            1  0   00    0011125577888888888877777776777754311110       00    01111222233333


Q ss_pred             c-hhHHHHHHHHHhhhchhhhhhhhhccccc-cCCCCC--------chH-----HHHHHHHHHHHHHhHHHHHHhccCCC
Q 012965          246 D-EKIALLGAIQSLFEGSMYTFVFLWTPALS-PNDEEI--------PHG-----FIFATFMLASMLGSSLASRLMARSPP  310 (452)
Q Consensus       246 ~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~--------~~~-----~~~~~~~i~~~~~~~~~g~l~dr~g~  310 (452)
                      - +..+.++...++...+.+.+ ..|.+.+. ++.++.        +.|     +....+++...+.+++..++.+|+|+
T Consensus       256 mP~~m~~l~~vqffsW~a~f~~-~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~  334 (477)
T TIGR01301       256 LPRPVWILLLVTCLNWIAWFPF-ILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGA  334 (477)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH-HHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3 34555666666666665554 44444443 222221        122     23344455566777888999999986


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHhhhcC---CCCcCCCCcc---cchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCccc
Q 012965          311 RVESYMQIVFVVSSVSLLLPIVTSFLVA---PSNVKSGGIS---FSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEA  384 (452)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~  384 (452)
                      |+. ....+..+.++++....+.....+   +.+.++..+.   ...+..++.+...|+..+..+...++++++..|++.
T Consensus       335 ~k~-~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~  413 (477)
T TIGR01301       335 GKR-LWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLG  413 (477)
T ss_pred             chh-HHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccC
Confidence            441 234554455555555443332110   1000001111   112466777888999999999999999999999644


Q ss_pred             --ccchhhhhhhhhhH------HHHHHHhccccCCchHHHHHHHHHHHHHHHHHHh
Q 012965          385 --RSTIMNFFRIPLNI------FVCVVLYNVDAFPITVMFGMCSIFLLVASVLQRR  432 (452)
Q Consensus       385 --r~~~~g~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (452)
                        .|..+|+.|...-.      +..+.+....+.+....+.+.++..+++.+...+
T Consensus       414 ~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~  469 (477)
T TIGR01301       414 AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALI  469 (477)
T ss_pred             CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHH
Confidence              57888998875221      2233344444444555666666666555554443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=5.6e-20  Score=163.92  Aligned_cols=231  Identities=20%  Similarity=0.216  Sum_probs=171.6

Q ss_pred             hhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHHhHhhhhhh
Q 012965           65 STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFS  143 (452)
Q Consensus        65 ~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~  143 (452)
                      .+.+-+++++|+++..-.+...+.+|+.|.+.||+|+|..+++|..++..++ +.++.++++.++++|.+||+|.+....
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t  178 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT  178 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence            4566678899999999888899999999999999999999999999999976 779999999999999999999999999


Q ss_pred             hhhhhhhhhc----ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHhcc
Q 012965          144 AFESWLVAEH----NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSW  219 (452)
Q Consensus       144 ~~~~~~i~e~----~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  219 (452)
                      +..+ +++|.    ++|++.++..-.        +.++|..++|++++.+.+..|.  +.+|.+.+.+.++...+.+...
T Consensus       179 sgla-mlAd~f~~d~er~~vmGialg--------fislG~lvgPpfGGilYe~~Gk--~aPFlVL~~v~Lld~~L~l~vi  247 (464)
T KOG3764|consen  179 SGLA-MLADVFPEDNERGSVMGIALG--------FISLGVLVGPPFGGILYEFAGK--SAPFLVLAIVLLLDGALQLLVI  247 (464)
T ss_pred             hhHH-HHHHHcccchhhhHHHHHHHH--------HHhccceecCCcccchHhhcCC--cCcHHHHHHHHHHHHHHHHhee
Confidence            8877 76665    445665553322        3457778888999988876544  6899999998888877776555


Q ss_pred             ccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCC---chHHHHHHHHHHHHH
Q 012965          220 TENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEI---PHGFIFATFMLASML  296 (452)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~---~~~~~~~~~~i~~~~  296 (452)
                      +.++.++++.++     ..+.++++++|..+.........+.. ..+..--++.+..|....   ..|..+....+...+
T Consensus       248 ~p~~~~~~~~~~-----~~~~~~Ll~dP~I~~~agai~~~n~~-lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~i  321 (464)
T KOG3764|consen  248 EPTEMDPDSTEQ-----GTPMWSLLMDPYILLIAGAITFSNSS-LAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAI  321 (464)
T ss_pred             CccccCcccccc-----CccHHHHHhCchHhhhhcchhhccch-HHHhCcccHHHHHHhccCCCcceeeeecccccchhc
Confidence            443333322111     22345678888887776665555544 333344444444454442   336777777788999


Q ss_pred             HhHHHHHHhccCCCCc
Q 012965          297 GSSLASRLMARSPPRV  312 (452)
Q Consensus       297 ~~~~~g~l~dr~g~~~  312 (452)
                      ++.+.|.+.||++..+
T Consensus       322 g~~lfg~la~k~~~~~  337 (464)
T KOG3764|consen  322 GTNLFGKLADKYPHLR  337 (464)
T ss_pred             cCchHHHHHHhcCchh
Confidence            9999999999998555

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.84  E-value=8.9e-20  Score=182.54  Aligned_cols=265  Identities=13%  Similarity=0.140  Sum_probs=175.9

Q ss_pred             hhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCc----------
Q 012965           54 WLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSP----------  122 (452)
Q Consensus        54 ~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~----------  122 (452)
                      ++..+.++.+.++++++..+.|++.+...+...+..++.|++.||+||||.+.++.++++++. +.++.+          
T Consensus        50 g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~  129 (633)
T TIGR00805        50 GLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYST  129 (633)
T ss_pred             HHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccc
Confidence            344777888999999999999988888888777888899999999999999999999999986 545432          


Q ss_pred             -----------------------------------------cHHHHHHHHHHHHhHhhhhhhhhhhhhhhhcccccchhh
Q 012965          123 -----------------------------------------QYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQ  161 (452)
Q Consensus       123 -----------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~~~r~~~~~  161 (452)
                                                               .+..++++|+++|+|.+..++...+ ++.|+.++.++..
T Consensus       130 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~-~i~d~~~~~~~~~  208 (633)
T TIGR00805       130 TVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS-YIDDFAKSKNSPL  208 (633)
T ss_pred             cccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch-hhhccCCccccHH
Confidence                                                     2457789999999999999999866 8998833333222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc-C-----------------C--CcchhhHHHHHHHHHHHHHHHhcccc
Q 012965          162 WLSITFSKAIFLGNGLVAILSGLFGNLLVDSF-S-----------------L--GPVAPFDAAACFLAIGMVIILSSWTE  221 (452)
Q Consensus       162 ~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~-~-----------------~--~~~~~f~~~~~~~~~~~~~~~~~~~~  221 (452)
                      ..+ .....    ..+|+.+++.+++.+.+.. +                 |  .|+..|++.+++.++..+... ..|+
T Consensus       209 ~~~-i~~~~----~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~-~~p~  282 (633)
T TIGR00805       209 YIG-ILESI----AVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF-FFPK  282 (633)
T ss_pred             HHH-HHHHH----HHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH-hCcc
Confidence            222 22223    3344444445444443321 1                 1  266778777766665544333 3343


Q ss_pred             ccCCC----C----cch--------------hHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCC
Q 012965          222 NYGDP----S----ESK--------------DLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDE  279 (452)
Q Consensus       222 ~~~~~----~----~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  279 (452)
                      +.+++    +    +.+              +..++..+..+.++++|.++...+...+.....+. ...|.|.|+++.+
T Consensus       283 ~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~-~~~~lP~yl~~~~  361 (633)
T TIGR00805       283 ALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNG-YITFLPKYLENQY  361 (633)
T ss_pred             ccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHc
Confidence            22111    0    000              00112233456788999988888777777766665 5889999999888


Q ss_pred             CCchH---HHHHHHHH-HHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHH
Q 012965          280 EIPHG---FIFATFML-ASMLGSSLASRLMARSPPRVESYMQIVFVVSSVS  326 (452)
Q Consensus       280 ~~~~~---~~~~~~~i-~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~  326 (452)
                      +.++.   .+.....+ +.+++.+++|+++||++.+..+.+..+.....+.
T Consensus       362 g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~  412 (633)
T TIGR00805       362 GISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLS  412 (633)
T ss_pred             CCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHH
Confidence            88763   44444444 5678999999999999866544444444433333

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.83  E-value=6.9e-19  Score=155.07  Aligned_cols=329  Identities=14%  Similarity=0.094  Sum_probs=195.9

Q ss_pred             cchhhHHHHHHHHHHHHhhhhh----hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHH
Q 012965           35 FNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCL  110 (452)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~----~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~  110 (452)
                      +.+++|..........+.+.+.    .-+.|...+.+|.+..|...+....+....+++..+|.++|++|||+.+.....
T Consensus        72 fgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l  151 (528)
T KOG0253|consen   72 FGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFL  151 (528)
T ss_pred             cccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHH
Confidence            4567777766666666665555    334455567889888888888777777777888899999999999999999998


Q ss_pred             HHHHH-HHHhcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012965          111 TYILS-CITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG  186 (452)
Q Consensus       111 ~~~i~-~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~  186 (452)
                      ...+. .+.+.++|+..+.+.|.+.|+|.|+ .|...+ +-.|.   .+|....-..         .-..+|.+....+.
T Consensus       152 ~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~-~yle~lp~~~r~~~~V~~---------~~waig~v~ea~la  220 (528)
T KOG0253|consen  152 VTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSA-IYLEFLPSSHRWLLTVMS---------FFWAIGQVFEALLA  220 (528)
T ss_pred             HHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHH-HHHHhccCcCCCcchhHH---------HHHHHHHHHHHHHH
Confidence            88874 5779999999999999999999999 677656 44444   3344322211         23456667776776


Q ss_pred             hhhhcccCCCcchhhHHHHHHHHHHHHHHHhccccccC------CCCcchhHHHHHH-----------------------
Q 012965          187 NLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYG------DPSESKDLLTQFR-----------------------  237 (452)
Q Consensus       187 ~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-----------------------  237 (452)
                      -....+.||+|++.+.. ..+.+.+ . ..++.||.++      +++++-+..+++.                       
T Consensus       221 w~vm~~~gwr~~l~~~~-~pl~~~a-~-f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e  297 (528)
T KOG0253|consen  221 WGVMSNFGWRYLLFTSS-TPLMFAA-R-FLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQE  297 (528)
T ss_pred             HHHHHhhhHHHHHHHHH-hHHHHHH-H-HHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhh
Confidence            66666677776643332 2222222 2 2235566432      1111111111100                       


Q ss_pred             ----------------HhhHHhhcchhHHHH---HHHHHhhhchhhhhhh-----------------hhccccccCCC--
Q 012965          238 ----------------GAAVAIASDEKIALL---GAIQSLFEGSMYTFVF-----------------LWTPALSPNDE--  279 (452)
Q Consensus       238 ----------------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----------------~~~p~~~~~~~--  279 (452)
                                      .....++. |++...   .....+.+...|+...                 ...|...+...  
T Consensus       298 ~~~~~~~~~~a~ke~rg~~~nLls-p~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c  376 (528)
T KOG0253|consen  298 ESDLDDSKSSAAKEVRGGTTNLLS-PKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANC  376 (528)
T ss_pred             hhchhhhhhccccccccchHhhcC-hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcC
Confidence                            00011111 111111   1111111111111111                 12222222110  


Q ss_pred             CCc-h-H-HHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHH
Q 012965          280 EIP-H-G-FIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLL  356 (452)
Q Consensus       280 ~~~-~-~-~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (452)
                      ..+ . . .-........++|.++.+++.||+|||++  +.....+.++....+......               ....+
T Consensus       377 ~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkT--Mal~l~~f~iflfll~~c~~r---------------n~~tv  439 (528)
T KOG0253|consen  377 PLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKT--MALSLILFGIFLFLLTTCKTR---------------NAYTV  439 (528)
T ss_pred             CccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHhcCc---------------chhHH
Confidence            111 1 1 12234567899999999999999999984  555555555544443322211               13345


Q ss_pred             HHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          357 GFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       357 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      ..+...++....+...+.|..|.+|+..|+++.|..+..
T Consensus       440 llf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsm  478 (528)
T KOG0253|consen  440 LLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSM  478 (528)
T ss_pred             HHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhH
Confidence            556666677777788899999999999999999887754

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.82  E-value=1.2e-20  Score=171.16  Aligned_cols=374  Identities=13%  Similarity=0.070  Sum_probs=207.7

Q ss_pred             HHHHHHHHHHHhhhhh-------hhhHHHHHh-hc----CCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHH
Q 012965           41 NYLLVYSLMMAGDWLQ-------GPYVYYLYS-TY----GFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTY  108 (452)
Q Consensus        41 ~~~~~~~~~~~~~~~~-------~p~l~~i~~-~~----g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~  108 (452)
                      ..+.+.....+.|.++       .|++..++- ..    ++++...+.+..+.+++..+++++.|++.||+|||+++...
T Consensus        41 k~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~  120 (538)
T KOG0252|consen   41 KAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKE  120 (538)
T ss_pred             HHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHH
Confidence            3555556666677777       344333331 11    14444556676777776777778999999999999999999


Q ss_pred             HHHHHHHH-HHhcCc-------cHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHH
Q 012965          109 CLTYILSC-ITKHSP-------QYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGL  177 (452)
Q Consensus       109 ~~~~~i~~-l~~~~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~i  177 (452)
                      ++++.+++ +++++.       -.+++...|++.|+|.|+.+|...+ +.+|.   ++|+...+..-.....+...|..+
T Consensus       121 liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAt-I~SE~an~~~RGa~iaavFa~Qg~GilaG~iv  199 (538)
T KOG0252|consen  121 LIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSAT-IMSESANKKTRGAFIAAVFAMQGFGILAGGIV  199 (538)
T ss_pred             HHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHH-HhhhhhhhccccceeEEEEEecchhHhhccHH
Confidence            99999876 555532       2358889999999999999999844 88988   567777766666666666666655


Q ss_pred             HHHHHHhhhhhhhc-----ccCCCcchhhHHHHHHHHHHHHHHHhccccccCCC-----C--cc-hhHHHHHH-------
Q 012965          178 VAILSGLFGNLLVD-----SFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDP-----S--ES-KDLLTQFR-------  237 (452)
Q Consensus       178 g~~~~~~l~~~l~~-----~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~-~~~~~~~~-------  237 (452)
                      +.++...+-..+.+     +.+.-||..+.+.++..+..+...+ .+||++.-+     +  .+ ++.++...       
T Consensus       200 t~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl-~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~  278 (538)
T KOG0252|consen  200 ALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRL-KMPETARYTALVSKKLKQAAGDMKKVLSVDIEAES  278 (538)
T ss_pred             HHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcchhHHHHhhcCHhhhhhccccccccccchhh
Confidence            55554444333222     1223489888888777777666655 677754321     0  00 00000000       


Q ss_pred             ----------Hh---hHHhhcc---hhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch-----------HHHHHHH
Q 012965          238 ----------GA---AVAIASD---EKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH-----------GFIFATF  290 (452)
Q Consensus       238 ----------~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-----------~~~~~~~  290 (452)
                                +.   +...+..   ++.+..+...++.....|.. ..+....+++ .+..+           +....+.
T Consensus       279 ~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~-nL~~s~I~~~-ig~~~~~~~~~~~~~vA~~~~ii  356 (538)
T KOG0252|consen  279 TAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQ-NLFQSVIFSA-IGVIPSANTYHELFKVAEGNLII  356 (538)
T ss_pred             ccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-ccHHHHHHHh-hccCCCcchHHHHHHHHHHHHHH
Confidence                      00   0011111   12222233333334444442 3333333321 11111           1111111


Q ss_pred             -HHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHH-HHhhch
Q 012965          291 -MLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFE-ACVGIF  368 (452)
Q Consensus       291 -~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~  368 (452)
                       ..+.++|..+...++|++||+.  +.+.++.+..+..+......+..       ...    ....+...+.. ++.-..
T Consensus       357 a~~~~vPGyw~tv~~id~iGRk~--iq~~GF~~~~i~~~~~~~~y~~~-------~~~----~Gf~v~y~l~~ff~NFGP  423 (538)
T KOG0252|consen  357 AVCSTVPGYWFTVYFIDIIGRKY--IQLMGFFIMTIFFFVIAGPYNQL-------ENT----IGFVVLYSLTFFFGNFGP  423 (538)
T ss_pred             HHHccCCceeEEEEEeehhhhHH--HHHhhHHHHHHHHHHHcCCcccc-------ccc----CceeehHHHHHHHHhcCC
Confidence             2335557777888999999988  35556666555555543322210       011    12222222222 233334


Q ss_pred             hhHHHHHHhhcCCcccccchhhhhhhh--hhHHHHHHH--hccc-----cCCchHHHHHHHHHHHHHHHHHH
Q 012965          369 WPSIMKMRSQYIPEEARSTIMNFFRIP--LNIFVCVVL--YNVD-----AFPITVMFGMCSIFLLVASVLQR  431 (452)
Q Consensus       369 ~~~~~~~~~~~~p~~~r~~~~g~~~~~--~~~~~~~~l--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  431 (452)
                      ......+.+|.+|.+.|++..|+....  .+..++...  ....     ..+....+.+.+.+.....+...
T Consensus       424 n~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~  495 (538)
T KOG0252|consen  424 NATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTL  495 (538)
T ss_pred             CceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeE
Confidence            466677889999999999999987764  344444322  2211     23445555555555555444433

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.82  E-value=8.7e-19  Score=155.47  Aligned_cols=308  Identities=16%  Similarity=0.153  Sum_probs=173.5

Q ss_pred             hHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhh
Q 012965           74 IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAE  152 (452)
Q Consensus        74 ~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e  152 (452)
                      .|.+.+...+...+.++.+|.++||+|||++++++++..+++. +.+.+.|+..+.++|++.|+..|...+.. + +++|
T Consensus        70 aGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~r-A-iisd  147 (451)
T KOG2615|consen   70 AGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIR-A-IISD  147 (451)
T ss_pred             hhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHH-H-HHHh
Confidence            3455555556666888999999999999999999999999986 66999999777777999999999886654 5 8777


Q ss_pred             c---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHH----HHHHHHHHHHHHhccccccCC
Q 012965          153 H---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAA----ACFLAIGMVIILSSWTENYGD  225 (452)
Q Consensus       153 ~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~----~~~~~~~~~~~~~~~~~~~~~  225 (452)
                      .   +.|+..++..+..++    +|..+||++|+.+..+. +..+   +++|...    .++..........+.||+-+.
T Consensus       148 V~sek~r~l~ms~v~~a~~----lGfilGPmIGgyla~f~-~~~g---~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~  219 (451)
T KOG2615|consen  148 VVSEKYRPLGMSLVGTAFG----LGFILGPMIGGYLAQFS-SISG---SYPFALPCLLVFILAAGDVTFFPWFLPETLPL  219 (451)
T ss_pred             hcChhhccceeeeeehhhh----cchhhcchhhhHHHhhH-hhhc---cCchHHHHHHHHHHHHHHHHHHHHhCCccccc
Confidence            6   667777765555444    33334444444433321 1122   2334332    222222233334467775433


Q ss_pred             CCcc---hhHH------HHHHH----hhHHhhcchhHHH------HHHHHHhhhchhhhhhhhhccccccCCCCCch---
Q 012965          226 PSES---KDLL------TQFRG----AAVAIASDEKIAL------LGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---  283 (452)
Q Consensus       226 ~~~~---~~~~------~~~~~----~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---  283 (452)
                      +++.   .+..      ++..+    ......||++...      .....-+.+...+....++.+.+.+++++.++   
T Consensus       220 rk~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~  299 (451)
T KOG2615|consen  220 RKRNDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQ  299 (451)
T ss_pred             hhhcccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhh
Confidence            2222   1000      00000    0111233433222      11111122222233334444555566677655   


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHH
Q 012965          284 GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEA  363 (452)
Q Consensus       284 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  363 (452)
                      |.++...++.+.+.+....+..||....     ..+.....+.++.+.+......+      .    ...+..+..+..+
T Consensus       300 G~vl~~tGl~m~~~ql~~~~~l~~~~~~-----~~a~l~~~l~~~vP~~llls~~~------~----~~~l~~~s~l~sf  364 (451)
T KOG2615|consen  300 GKVLSTTGLLMLVIQLALVPILPRYKGN-----IKAVLLFSLLLIVPAFLLLSLAR------T----PVVLYLGSTLKSF  364 (451)
T ss_pred             eeeeehhhHHHHHHHHhccccccccccc-----hhhHHHHHHHHHHHHHHHHhccc------c----chhhhHHHHHHHH
Confidence            5566666666665555555555554311     11222222222222222211100      0    0356777888888


Q ss_pred             HhhchhhHHHHHHhhcCCcccccchhhhhhhh------hhHHHHHHHhc
Q 012965          364 CVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYN  406 (452)
Q Consensus       364 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~  406 (452)
                      ......+....+.....|+++||+.+|+.+..      .++++++....
T Consensus       365 ~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  365 STASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             HHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            88888899999999999999999999987764      45566655543

>PRK09669 putative symporter YagG; Provisional

Probab=99.81  E-value=3.1e-17  Score=159.35  Aligned_cols=297  Identities=13%  Similarity=0.106  Sum_probs=170.9

Q ss_pred             HHHhhcCCCcchhHHHHHHHHhhhhhccccccccccc----cCcchH-HHHHHHHHHHHH-HHhcCcc------HHHHHH
Q 012965           62 YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK----QGRKRA-CVTYCLTYILSC-ITKHSPQ------YKILMI  129 (452)
Q Consensus        62 ~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr----~Grr~~-l~~~~~~~~i~~-l~~~~~~------~~~l~~  129 (452)
                      ...+++|+|+.++|.++++..+...+..|+.|.++||    +||||. ++.+.+..+++. ++...++      .+.+++
T Consensus        35 ~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~  114 (444)
T PRK09669         35 FYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACV  114 (444)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHH
Confidence            3447899999999999999999999999999999998    787555 445666666654 3333332      345556


Q ss_pred             HHHHHHhHhhhhhhhhhhhhhhhc----ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-ccCCCcchhhHHH
Q 012965          130 GRILGGIATSLLFSAFESWLVAEH----NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD-SFSLGPVAPFDAA  204 (452)
Q Consensus       130 ~r~l~G~~~~~~~~~~~~~~i~e~----~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~-~~~~~~~~~f~~~  204 (452)
                      ...+.+.+.......-.+ +.+|.    ++|.+..+    .......+|..+++.+..++...+.+ ....+|+..+.+.
T Consensus       115 ~~~l~~~~~t~~~ip~~a-l~~~~t~~~~eR~~l~~----~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~  189 (444)
T PRK09669        115 TYILLSLVYTAINVPYCA-MPGAITNDPRERHSLQS----WRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVM  189 (444)
T ss_pred             HHHHHHHHHHhhcchHHH-hHHHhcCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence            666666665555544434 66555    33333222    23334445555555544444443321 1124667667666


Q ss_pred             HHHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch-
Q 012965          205 ACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH-  283 (452)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-  283 (452)
                      +++..+..+......+|+..+++++   .++..+..+..+|||+++.+.....+...... ......+.|.+...+.+. 
T Consensus       190 ~ii~~v~~~~~~~~~~e~~~~~~~~---~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~  265 (444)
T PRK09669        190 GLLGVVLFFCCFFMTKERYTPEVDN---SSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVV-TRGGATLYYVNYVLLRPDL  265 (444)
T ss_pred             HHHHHHHHHHHhCCeEEecCCCCcC---CCCHHHHHHHHhCCchHHHHHHHHHHHHHHHH-HHhhhhheeeeeecCCHHH
Confidence            6666655554444445543222211   12234566778888887776555443332221 112223333333333222 


Q ss_pred             -HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHH
Q 012965          284 -GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFE  362 (452)
Q Consensus       284 -~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  362 (452)
                       +.......+..+++.++.+++.||+|+|+.  ...+.....+...........         +    .+...+..++.+
T Consensus       266 ~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~--~~~~~~~~~~~~~~~~~~~~~---------~----~~~~~~~~~i~g  330 (444)
T PRK09669        266 ATLFLVTGMIAGLFGALLSERLLGKFDRVRA--FKWTIVAFVILSALIFFIPPS---------N----VWLIFALNILFN  330 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChHHH--HHHHHHHHHHHHHHHHHhCcc---------h----HHHHHHHHHHHH
Confidence             334444456778888999999999998873  333333222222211111110         0    124566677889


Q ss_pred             HHhhchhhHHHHHHhhcCCc
Q 012965          363 ACVGIFWPSIMKMRSQYIPE  382 (452)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~p~  382 (452)
                      ++.+...+..+++.+|..+.
T Consensus       331 ~~~~~~~~~~~am~ad~~d~  350 (444)
T PRK09669        331 FIQNLTTPLQWSMFSDVVDY  350 (444)
T ss_pred             HHHHHHHHHHHHHHHhhhhh
Confidence            99998889999999999863

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.79  E-value=4.6e-17  Score=150.90  Aligned_cols=338  Identities=13%  Similarity=0.068  Sum_probs=189.4

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHhh-cCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHH--HH-H
Q 012965           42 YLLVYSLMMAGDWLQGPYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL--SC-I  117 (452)
Q Consensus        42 ~~~~~~~~~~~~~~~~p~l~~i~~~-~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i--~~-l  117 (452)
                      .-...+...+..+...|+.+.-.++ .|+|.+|+|.+++...+...+.+|+.|.++||+|.||-++.......+  +. .
T Consensus        12 ~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff   91 (412)
T PF01306_consen   12 LSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFF   91 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence            3334444444555557887666664 899999999999999999999999999999999977766555433322  32 1


Q ss_pred             H-hcC----ccHH-HHHHHHHHHHhHhhhhhhhhhhhhhhhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 012965          118 T-KHS----PQYK-ILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLV  190 (452)
Q Consensus       118 ~-~~~----~~~~-~l~~~r~l~G~~~~~~~~~~~~~~i~e~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~  190 (452)
                      . .+.    .|.+ ..+++-...|+......|..++ +..+. ++.+...+..+..-+        +|.+++..+++.+.
T Consensus        92 ~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea-~~er~sr~~~feYG~~R~wGS--------ig~ai~s~~~G~L~  162 (412)
T PF01306_consen   92 IYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEA-YAERVSRRNGFEYGRARMWGS--------IGFAIASLLAGILF  162 (412)
T ss_dssp             HHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHH-HHHHHHHHHSS-HHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH-HHHHHHHHhcCCcchHHHHhh--------HHHHHHHHHhheee
Confidence            1 222    2322 2233333334444444444444 43333 333444444443322        44444445555544


Q ss_pred             cccCCCcchhhHHHHHHHHHHHHHHHhccccccCCC--Ccc--hhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhh
Q 012965          191 DSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDP--SES--KDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTF  266 (452)
Q Consensus       191 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (452)
                      +.   +....|++.....++...+.....|+++++.  ++.  .+..+...++..+++|+|++|.+.+........... 
T Consensus       163 ~i---~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~v-  238 (412)
T PF01306_consen  163 NI---NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDV-  238 (412)
T ss_dssp             HH---HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------HHHHHHHTTSHHHHHHHHHHHHHHHHHHH-
T ss_pred             ee---CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHH-
Confidence            32   2345666655554444444443333322211  111  111111123456788999999887665544443332 


Q ss_pred             hhhhccccccCCCCC-----c-hHHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 012965          267 VFLWTPALSPNDEEI-----P-HGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPS  340 (452)
Q Consensus       267 ~~~~~p~~~~~~~~~-----~-~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (452)
                      .....|.|.....+.     . .|...+...+.+++.-.+.+++.+|+|.|+  .+++...+..+=.....+....    
T Consensus       239 fdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~--~Lllag~i~~iRi~~~~~~~~~----  312 (412)
T PF01306_consen  239 FDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKN--LLLLAGVIMAIRIIGSGFATNP----  312 (412)
T ss_dssp             HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHT--SH----
T ss_pred             HHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHh--HHHHHHHHHHHHHHHHhhhcch----
Confidence            222234444322221     1 266777777889999999999999999887  3666655555555554433333    


Q ss_pred             CcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhh-hhh------hHHHHHHHhcccc
Q 012965          341 NVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFR-IPL------NIFVCVVLYNVDA  409 (452)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~------~~~~~~~l~~~~~  409 (452)
                                 +.+...-.+.++-.........-++.+.+|++..++...+.. ++.      -...++.++|..|
T Consensus       313 -----------~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G  377 (412)
T PF01306_consen  313 -----------WVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG  377 (412)
T ss_dssp             -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC
Confidence                       577788889999999888889999999999999888776642 321      1244566677644

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.79  E-value=4e-17  Score=157.87  Aligned_cols=312  Identities=17%  Similarity=0.146  Sum_probs=198.9

Q ss_pred             HHHhhcCCCcchhHHHHHHHHhhhhhcccccccccc----ccCcchHHH-HHHHHHHHHH-HHhcC-c-------cHHHH
Q 012965           62 YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLAD----KQGRKRACV-TYCLTYILSC-ITKHS-P-------QYKIL  127 (452)
Q Consensus        62 ~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~D----r~Grr~~l~-~~~~~~~i~~-l~~~~-~-------~~~~l  127 (452)
                      ...+..|+++..+|.+....-+...+..|+.|.++|    |+||||..+ .+....+++. ++... +       ....+
T Consensus        27 f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~  106 (428)
T PF13347_consen   27 FYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWL  106 (428)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHH
Confidence            344667999999999999999999999999999999    899777665 5666667765 43333 3       22345


Q ss_pred             HHHHHHHHhHhhhhhhhhhhhhhhhc----ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccC-CCcchhhH
Q 012965          128 MIGRILGGIATSLLFSAFESWLVAEH----NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS-LGPVAPFD  202 (452)
Q Consensus       128 ~~~r~l~G~~~~~~~~~~~~~~i~e~----~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~-~~~~~~f~  202 (452)
                      .+.-++..++.........+ +..|.    ++|.+..+.    ......+|..+...+.+.+...+.+... .+|+....
T Consensus       107 ~~~~~l~~~~~t~~~i~~~a-l~~~lt~~~~~R~~l~~~----~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~  181 (428)
T PF13347_consen  107 FVFYILFDIAYTFVQIPYNA-LIPELTPDPDERTRLSSW----RMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMAL  181 (428)
T ss_pred             HHHHHHHHHhhhhccCchhh-cCccccccHhhhhhHHHH----HHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHH
Confidence            66666677777777666545 55554    444444332    2333334443444444444433332222 25777777


Q ss_pred             HHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCc
Q 012965          203 AAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIP  282 (452)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  282 (452)
                      +.+++..+.........+|++++.++ ++.+.+.++..+++++||+++.+.....+....... .....+.|.++..+.+
T Consensus       182 v~~iv~~v~~~i~~~~~ke~~~~~~~-~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~-~~~~~~y~~~~vl~~~  259 (428)
T PF13347_consen  182 VLAIVGLVFFLITFFFVKERSVEVTE-QEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFAL-MNTFLPYYFTYVLGNE  259 (428)
T ss_pred             HHHHHHHHHhhhhhheeeeccccccc-cccccccccchhhhcccchHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHhcCc
Confidence            77777777666666566773222222 222334566777888998888776666555444332 3444455555444433


Q ss_pred             --hHHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHH
Q 012965          283 --HGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCT  360 (452)
Q Consensus       283 --~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (452)
                        .+.......+..+++.++.++++||+|+|+.  ...+..+..+......+.... +            .+...+...+
T Consensus       260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~--~~~~~~~~~~~~~~~~~~~~~-~------------~~~~~i~~~l  324 (428)
T PF13347_consen  260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKV--YIIGLLLAALGFLLLFFLGPG-S------------PWLVLILFIL  324 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHccceee--hhhhHHHHHHHHHHHHHHHhh-h------------HHHHHHHHHH
Confidence              2555666778899999999999999999983  555555555555554444311 0            1477788889


Q ss_pred             HHHHhhchhhHHHHHHhhcCCccc-------ccchhhhhhhh
Q 012965          361 FEACVGIFWPSIMKMRSQYIPEEA-------RSTIMNFFRIP  395 (452)
Q Consensus       361 ~g~~~~~~~~~~~~~~~~~~p~~~-------r~~~~g~~~~~  395 (452)
                      .+++.+..+...+++.+|..+.++       .|..+|+.++.
T Consensus       325 ~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~  366 (428)
T PF13347_consen  325 AGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFF  366 (428)
T ss_pred             hHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhh
Confidence            999999999999999999987543       34445665553

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.78  E-value=1.3e-15  Score=146.59  Aligned_cols=343  Identities=12%  Similarity=0.087  Sum_probs=199.5

Q ss_pred             HHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHH-HH-HHhc-Ccc-HHHHHHHHHHHHhHhhhhhhhhhhhhh
Q 012965           75 GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL-SC-ITKH-SPQ-YKILMIGRILGGIATSLLFSAFESWLV  150 (452)
Q Consensus        75 g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i-~~-l~~~-~~~-~~~l~~~r~l~G~~~~~~~~~~~~~~i  150 (452)
                      +...++..+...+..|+.|.++|+-|+||.++.......+ ++ ...+ .++ ++...+.-++.-++.+.......+ ++
T Consensus        73 ~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna-~L  151 (477)
T PF11700_consen   73 LYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA-YL  151 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence            4556677777778889999999999988877766655544 43 3333 344 433344444444454444444433 55


Q ss_pred             hhcccccchh-hH---------------------HHHHHHHHHHHHHHHHHHHHHhhhhhhhcc------cCCCcchhhH
Q 012965          151 AEHNKRGFEQ-QW---------------------LSITFSKAIFLGNGLVAILSGLFGNLLVDS------FSLGPVAPFD  202 (452)
Q Consensus       151 ~e~~~r~~~~-~~---------------------~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~------~~~~~~~~f~  202 (452)
                      .|..++.... +.                     .....+.+...|+ +|.++.-.+.-.+...      ..+.-|..+.
T Consensus       152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy-~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~  230 (477)
T PF11700_consen  152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGY-IGGLVALLISLLLVISPGSTASNTWAIRVAFL  230 (477)
T ss_pred             HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHH-HHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence            5541111110 00                     0112333333333 3333322222221111      1234566777


Q ss_pred             HHHHHHHHHHHHHHhccccccC-CCCc-ch----hHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhcccccc
Q 012965          203 AAACFLAIGMVIILSSWTENYG-DPSE-SK----DLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSP  276 (452)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  276 (452)
                      ..++..++..+......||+++ ++.+ .+    ...++..+..+++.|+|....+.+..++..-+... +......|.+
T Consensus       231 ~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~t-i~~~~~i~a~  309 (477)
T PF11700_consen  231 IVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNT-IISFAGIYAT  309 (477)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            7776666655555556666654 2111 11    22455666777888888888887777777666555 5777777888


Q ss_pred             CCCCCchH---HHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHH--HhhhcCCCCcCCCCcccch
Q 012965          277 NDEEIPHG---FIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIV--TSFLVAPSNVKSGGISFSG  351 (452)
Q Consensus       277 ~~~~~~~~---~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  351 (452)
                      +..+.+..   .......+.+++|+++.+++.||+|.|+.+.+........+..+...+  ......         ....
T Consensus       310 ~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g---------~~~~  380 (477)
T PF11700_consen  310 EVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFG---------LKSP  380 (477)
T ss_pred             HhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccC---------cccH
Confidence            78888764   334455688999999999999999998433344444333232222221  111100         0011


Q ss_pred             hhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh------hhHHHHHHHhccccCCchHHHHHHHHHHHH
Q 012965          352 SLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNVDAFPITVMFGMCSIFLLV  425 (452)
Q Consensus       352 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  425 (452)
                      +.+.+...+.|+..|..++..-++.+|+.|+++.+.-+|++++.      .++++.+.+.+.++. ....+....++.++
T Consensus       381 ~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~-~r~g~~~l~~lf~~  459 (477)
T PF11700_consen  381 WEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS-QRYGFLFLLVLFLI  459 (477)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-chhHHHHHHHHHHH
Confidence            46677788899999999999999999999999999999998874      455555556555442 33334444444444


Q ss_pred             HHHHH
Q 012965          426 ASVLQ  430 (452)
Q Consensus       426 ~~~~~  430 (452)
                      ...+.
T Consensus       460 gl~ll  464 (477)
T PF11700_consen  460 GLILL  464 (477)
T ss_pred             HHHHH
Confidence            44333

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK09848 glucuronide transporter; Provisional

Probab=99.78  E-value=2.3e-16  Score=153.56  Aligned_cols=315  Identities=11%  Similarity=0.025  Sum_probs=175.5

Q ss_pred             hhhhHHHH-HhhcCCCcchhHHHHHHHHhhhhhcccccccccccc----CcchHH-HHHHHHHHHHH-HH-h----cCcc
Q 012965           56 QGPYVYYL-YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ----GRKRAC-VTYCLTYILSC-IT-K----HSPQ  123 (452)
Q Consensus        56 ~~p~l~~i-~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~----Grr~~l-~~~~~~~~i~~-l~-~----~~~~  123 (452)
                      ..++++.. .+.+|+++.++|.+.+...+...+..|+.|+++||.    ||||.. ..+.+...+.. ++ .    .+++
T Consensus        27 ~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (448)
T PRK09848         27 GALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHS  106 (448)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcc
Confidence            34544333 356799999999999999998999999999999986    777755 45555444432 22 1    1122


Q ss_pred             --HHHHHHHHHHHHhHhhhhhhhhhhhhhhhc----ccccchhhHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhcccCCC
Q 012965          124 --YKILMIGRILGGIATSLLFSAFESWLVAEH----NKRGFEQQWLSITFSK-AIFLGNGLVAILSGLFGNLLVDSFSLG  196 (452)
Q Consensus       124 --~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~----~~r~~~~~~~~~~~~~-~~~~g~~ig~~~~~~l~~~l~~~~~~~  196 (452)
                        .+..+..-.+.+++.+...+...+ +..|.    ++|.+..+......+. +...+..+++.+++..++.    ...+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~a-l~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~----~~~~  181 (448)
T PRK09848        107 SKVVYAYLTYMGLGLCYSLVNIPYGS-LATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEE----MVSV  181 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccHhh-hhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc----hhhh
Confidence              223444556677777777665544 33332    3444332222111111 1223333344333322211    0111


Q ss_pred             cchhhHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhcccccc
Q 012965          197 PVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSP  276 (452)
Q Consensus       197 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  276 (452)
                      |.....+.+++..+..+......||+.++++++    ++.++..+.++|||+++.......+....... .....|.|.+
T Consensus       182 ~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~~----~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~  256 (448)
T PRK09848        182 YHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQ----PSLKISLQTLKRNRPLFMLCIGALCVLISTFA-VSASSLFYVR  256 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcEeccCCCccC----CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HhhhheeeEe
Confidence            111112223333333333333445543322221    13344567788999988876666655554443 3556777777


Q ss_pred             CCCCCch--HHHH-HHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhh
Q 012965          277 NDEEIPH--GFIF-ATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSL  353 (452)
Q Consensus       277 ~~~~~~~--~~~~-~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (452)
                      +..+.+.  +... ....++.+++.++.+++.||+|+|+  .+..+..+..++.....+....         +    .+.
T Consensus       257 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~--~~~~g~~~~~i~~~~~~~~~~~---------~----~~~  321 (448)
T PRK09848        257 YVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKN--TFLIGALLGTCGYLLFFWVSVW---------S----LPV  321 (448)
T ss_pred             eecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH--HHHHHHHHHHHHHHHHHHcCch---------h----HHH
Confidence            7666644  2222 2234567788899999999999877  3445544444443333221100         0    124


Q ss_pred             HHHHHHHHHHHhhchhhHHHHHHhhcCCccc-------ccchhhhhhhh
Q 012965          354 QLLGFCTFEACVGIFWPSIMKMRSQYIPEEA-------RSTIMNFFRIP  395 (452)
Q Consensus       354 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~-------r~~~~g~~~~~  395 (452)
                      ......+.+++.+...+..+++.+|..|+++       +|...|+.++.
T Consensus       322 ~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~  370 (448)
T PRK09848        322 ALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFT  370 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHH
Confidence            4556677888999888999999999887543       46667776664

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.77  E-value=3.8e-16  Score=151.48  Aligned_cols=313  Identities=13%  Similarity=0.050  Sum_probs=181.0

Q ss_pred             hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHH
Q 012965           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G  135 (452)
                      ...++.+.+|+|-+ ....|+.....+...+..++.|+++|.+|||..++.+.++..+|. +++-++|...++.+..+.|
T Consensus        64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~G  142 (599)
T PF06609_consen   64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYG  142 (599)
T ss_pred             HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHH
Confidence            56678899999876 455566666666677888899999999999999999999999987 7799999999999999999


Q ss_pred             hHhhhhhhhhhhhhhhhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHH
Q 012965          136 IATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVI  214 (452)
Q Consensus       136 ~~~~~~~~~~~~~~i~e~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~  214 (452)
                      +|.|...... . .++|. .+|.|..+.  ....    .........++.++..+..+.  +||+.|++..+...+.++.
T Consensus       143 vgaG~~~~~~-~-~isEl~p~k~R~~~~--~~~~----~~~i~~~~~~~~ia~~~~~~~--~WRw~~~~~~i~~~i~~vl  212 (599)
T PF06609_consen  143 VGAGVQELAA-L-AISELVPNKWRGLGL--AIAS----IPFIITTWISPLIAQLFAAHS--GWRWIFYIFIIWSGIALVL  212 (599)
T ss_pred             HhhHHHHHHH-H-HHHHhcccchhhhHh--HHHH----HHHHhhhcccHHHHHHhccCC--CcchHHHHHHHHHHHHHHH
Confidence            9988776432 3 57887 333332221  1111    122222234455555544434  4555666665554444333


Q ss_pred             HH-hccccccCCC-CcchhHHHHHHHh-----------------------------------------------------
Q 012965          215 IL-SSWTENYGDP-SESKDLLTQFRGA-----------------------------------------------------  239 (452)
Q Consensus       215 ~~-~~~~~~~~~~-~~~~~~~~~~~~~-----------------------------------------------------  239 (452)
                      .. +..|+++++. .+..+.++..++-                                                     
T Consensus       213 ~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~  292 (599)
T PF06609_consen  213 IFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEW  292 (599)
T ss_pred             HHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhh
Confidence            22 2344332211 1111111111110                                                     


Q ss_pred             ---------hHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCC------chHHHHHHHHHHHHHHhHHHHHH
Q 012965          240 ---------AVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEI------PHGFIFATFMLASMLGSSLASRL  304 (452)
Q Consensus       240 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~g~l  304 (452)
                               ..+++|++|.+...+...+.....|.....+.|......++.      ..+......+.+...+..+.+.+
T Consensus       293 ~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l  372 (599)
T PF06609_consen  293 FGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLL  372 (599)
T ss_pred             hccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHH
Confidence                     013455545444433333333333333445555543332222      12455666778888888889999


Q ss_pred             hccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCccc
Q 012965          305 MARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEA  384 (452)
Q Consensus       305 ~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~  384 (452)
                      ..|++|-|. .+..+.....+.+.... .....+.        .    ..+...++.+++.|....+....++-..|++.
T Consensus       373 ~~~ir~~Kw-~li~~~~~~ta~~Gama-~~~~~n~--------~----~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~  438 (599)
T PF06609_consen  373 FSKIRHIKW-QLIFGSVLMTAFCGAMA-AVRPDNK--------N----AAIAFLVLAGFGIGGILVPAIVIAQLIVPDED  438 (599)
T ss_pred             HHHccchhH-HHHHHHHHHHHHHHHHH-HccCCCc--------c----hHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH
Confidence            988865552 22333333333222222 2222111        1    23455667777777777777777778889998


Q ss_pred             ccchhhhhhh
Q 012965          385 RSTIMNFFRI  394 (452)
Q Consensus       385 r~~~~g~~~~  394 (452)
                      -+++.|+...
T Consensus       439 ig~a~gL~~s  448 (599)
T PF06609_consen  439 IGTATGLTGS  448 (599)
T ss_pred             HHHHHHHHHH
Confidence            8877665443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.76  E-value=1.1e-15  Score=149.43  Aligned_cols=308  Identities=14%  Similarity=0.131  Sum_probs=169.7

Q ss_pred             hhhHHHHH-hhcCCCcchhHHHHHHHHhhhhhcccccccccc----ccCcc-hHHHHHHHHHHHHH-HHhcCc----c--
Q 012965           57 GPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLAD----KQGRK-RACVTYCLTYILSC-ITKHSP----Q--  123 (452)
Q Consensus        57 ~p~l~~i~-~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~D----r~Grr-~~l~~~~~~~~i~~-l~~~~~----~--  123 (452)
                      .++++..+ +.+|+++.++|.++.+.-+...+..|+.|.++|    |+||| +.++.+.+..+++. ++...+    +  
T Consensus        26 ~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~  105 (473)
T PRK10429         26 YMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQ  105 (473)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHH
Confidence            55554555 567999999999999999999999999999999    66984 55556666667764 332222    1  


Q ss_pred             HHHHHHHHHHHHhHhhhhhhhhhhhhhhhc----ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-ccCCCcc
Q 012965          124 YKILMIGRILGGIATSLLFSAFESWLVAEH----NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD-SFSLGPV  198 (452)
Q Consensus       124 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~----~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~-~~~~~~~  198 (452)
                      +..+++.-.+.+++.........+ +..|.    ++|.+..+....    ...+|..+++.+...+.....+ ...-+|+
T Consensus       106 ~~~~~~~~~l~~~~~t~~~ip~~a-l~~~lt~~~~eR~~l~~~~~~----~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~  180 (473)
T PRK10429        106 YVFVCVTYILWGMTYTIMDIPFWS-LVPTLTLDKREREQLVPYPRF----FASLAGFVTAGFTLPFVNYVGGGDRGFGFQ  180 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHcchHHh-hhHHhCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence            334555556667766666555544 44443    445554443222    2222222222222222111111 0111344


Q ss_pred             hhhHHHHHHHHHHHHHHHhccccccCCCC--cchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhcccccc
Q 012965          199 APFDAAACFLAIGMVIILSSWTENYGDPS--ESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSP  276 (452)
Q Consensus       199 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  276 (452)
                      ....+.+++.++..+......+|++.+++  ++++.+.+.++..+.+++||+++.+.....+.....+. ...+.+.|.+
T Consensus       181 ~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~-~~~~~~y~~~  259 (473)
T PRK10429        181 MFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSHLTLKDIVALIYKNDQLSCLLGMALAYNIASNI-INGFAIYYFT  259 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHcCceecCCccccccccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HhhheeeEEE
Confidence            44455555544444444434555432111  11111123455566677888877766555555443332 3445555554


Q ss_pred             CCCCCch--HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhH
Q 012965          277 NDEEIPH--GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQ  354 (452)
Q Consensus       277 ~~~~~~~--~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (452)
                      ...+...  +.......++.+++.++.+++.||+|+|+.  +..+..+..+.............      .+    .+..
T Consensus       260 y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~--~~~~~~~~~~~~~~~~~~~~~~~------~~----~~~~  327 (473)
T PRK10429        260 YVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRIL--WAGASIFPVLSCGVLLLMGLAAP------HN----ALLI  327 (473)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH--HHHHHHHHHHHHHHHHHHhccCc------hh----HHHH
Confidence            4333222  344455567888999999999999998873  33333332322222221111100      00    1344


Q ss_pred             HHHHHHHHHHhhchhhHHHHHHhhcCCc
Q 012965          355 LLGFCTFEACVGIFWPSIMKMRSQYIPE  382 (452)
Q Consensus       355 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~  382 (452)
                      ++...+.+++.+..++..+++.+|..+.
T Consensus       328 ~i~~~l~g~~~~~~~~~~~am~ad~id~  355 (473)
T PRK10429        328 VIAGILLNIGTALFWVLQVIMVADTVDY  355 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            5566778888888888899999999763

>TIGR00788 fbt folate/biopterin transporter

Probab=99.76  E-value=1e-15  Score=148.81  Aligned_cols=332  Identities=14%  Similarity=0.059  Sum_probs=189.5

Q ss_pred             hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccC-----cchHHHHHHHHHH-HHH-HHhcCccHHHH-H
Q 012965           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQG-----RKRACVTYCLTYI-LSC-ITKHSPQYKIL-M  128 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~G-----rr~~l~~~~~~~~-i~~-l~~~~~~~~~l-~  128 (452)
                      .+..+.+.+++|+|+++++...+...+...+ .+++|+++||++     ||+.++++.++.. +.. ..+..++.... .
T Consensus        46 ~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~  124 (468)
T TIGR00788        46 LPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAA  124 (468)
T ss_pred             hhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence            4555566678999999998777777765555 556999999998     7777777776663 333 33444554444 4


Q ss_pred             HHHHHHHhHhhhhhhhhhhhhhhhc--ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHH
Q 012965          129 IGRILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAAC  206 (452)
Q Consensus       129 ~~r~l~G~~~~~~~~~~~~~~i~e~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~  206 (452)
                      +.+++.+++.+...++..+ +..|.  ++++...+.....+. .    ..+|..+++.+++.+.+.  ++|+..|.+.+.
T Consensus       125 ~~~~l~~~~~a~~dv~~da-~~~e~~~~~~~~~~~~~s~~~~-~----~~~G~~vg~~l~G~l~~~--~~~~~~f~~~a~  196 (468)
T TIGR00788       125 AFIFLAALAKALYDVLVDS-LYSERIRESPSAGPSLVSWMWG-A----SATGGLISSLLGGPLLDK--TLTRILFLITAA  196 (468)
T ss_pred             HHHHHHHHHHHHHHHhHHH-HHhhhhhcCCCcCCCeeeHHHH-H----HHHHHHHHHHHHHHHHHh--cCcchHHHHHHH
Confidence            4889999999999888877 76665  333332222222222 1    224555555556555543  456788888777


Q ss_pred             HHHHHHHHHHhccccccC--CCCcchh--------------HHHHHHHhhHHhhcchhHHHHHHHHHh-hhchhhhhhhh
Q 012965          207 FLAIGMVIILSSWTENYG--DPSESKD--------------LLTQFRGAAVAIASDEKIALLGAIQSL-FEGSMYTFVFL  269 (452)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~--~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  269 (452)
                      +.++... .....+|+++  +++..++              ..++..++....+++|..+.......+ .... ......
T Consensus       197 l~ll~~~-~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~-~~~~~~  274 (468)
T TIGR00788       197 LLLLQLF-VSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANL-PGASGS  274 (468)
T ss_pred             HHHHHHH-HHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhc-CCCCce
Confidence            7666533 3335666531  1111000              011111233444666776664443333 1111 111111


Q ss_pred             hccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCC
Q 012965          270 WTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGG  346 (452)
Q Consensus       270 ~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (452)
                      +. .+..+..|.++   |......+++.+++....+++.+|++.|+  .+..+..+..++...........+.. ...++
T Consensus       275 ~f-~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~--~l~~~~~l~~~~~~~~~~l~~~~~~~-~gi~~  350 (468)
T TIGR00788       275 VF-CATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRL--LFGVTTLLYTLSSLFDLILVKRWNLA-FGISD  350 (468)
T ss_pred             eE-EEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHH--HHHHHHHHHHHHHhCceeeeeccccc-cCCCC
Confidence            10 12223445444   67777788999999999999999998776  24444433333332211110000000 00000


Q ss_pred             cccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhhh------hHHHHHHHhcc
Q 012965          347 ISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPL------NIFVCVVLYNV  407 (452)
Q Consensus       347 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~------~~~~~~~l~~~  407 (452)
                          .+.......+.+++.+..+.....++++..|++.+++.+++.+...      +..+++.+.+.
T Consensus       351 ----~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~  413 (468)
T TIGR00788       351 ----EVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMET  413 (468)
T ss_pred             ----eeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                1234455667777888888778999999999999999988877642      23455555443

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.75  E-value=5.2e-22  Score=193.63  Aligned_cols=302  Identities=21%  Similarity=0.226  Sum_probs=175.2

Q ss_pred             hhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCc---cHHHHHHHHHHHHhHhhhhhhhhhhh
Q 012965           73 EIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSP---QYKILMIGRILGGIATSLLFSAFESW  148 (452)
Q Consensus        73 ~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~  148 (452)
                      +.++..+..+++..+++++.|.++||+|||+.+..+..+..++. +.++++   |++.+.++|++.|++.|...+.... 
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~-  125 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPI-  125 (451)
T ss_pred             HHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence            45677788888888888999999999999999999999999986 678898   9999999999999999999888845 


Q ss_pred             hhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc-CCCcchhhHHHHHHHHHHHHHHHhcccccc-
Q 012965          149 LVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSF-SLGPVAPFDAAACFLAIGMVIILSSWTENY-  223 (452)
Q Consensus       149 ~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~-  223 (452)
                      ++.|.   ++|++.....+.    ...    +|..++..++....+.. .+.||..+....+..++..+.. ...||.+ 
T Consensus       126 ~~~E~~~~~~R~~~~~~~~~----~~~----~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~-~~~pESP~  196 (451)
T PF00083_consen  126 YISEIAPPKHRGFLSSLFQL----FWA----LGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLR-FFLPESPR  196 (451)
T ss_pred             cccccccccccccccccccc----ccc----cccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            88898   445544443332    223    33333333332222212 3568888877766665443333 3566642 


Q ss_pred             -----CCCCcchhHHHHH-----------------HH------hhHHhhcchh----HHHHHHHHHhhhchhhhhhhhhc
Q 012965          224 -----GDPSESKDLLTQF-----------------RG------AAVAIASDEK----IALLGAIQSLFEGSMYTFVFLWT  271 (452)
Q Consensus       224 -----~~~~~~~~~~~~~-----------------~~------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  271 (452)
                           ++++++++..++.                 ++      ..++++++++    .........+.....+.....+.
T Consensus       197 wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~  276 (451)
T PF00083_consen  197 WLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYS  276 (451)
T ss_pred             eecccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccc
Confidence                 2222222211110                 00      1223344322    22222222233333333345555


Q ss_pred             cccccCCCCCchH-HHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHH--HHhhhcCCCCcCCCCcc
Q 012965          272 PALSPNDEEIPHG-FIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPI--VTSFLVAPSNVKSGGIS  348 (452)
Q Consensus       272 p~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  348 (452)
                      |.+.++ .+.+.. .......+...++.++...+.||+|||+.  +..+.....++.....  .......     +..+.
T Consensus       277 ~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~--~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  348 (451)
T PF00083_consen  277 PSIFEN-AGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKL--LIIGLLLMAICSLILGIIFFLGVSS-----SSWWS  348 (451)
T ss_pred             cccccc-cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-----ccccc
Confidence            655543 333333 22233445667777788899999999973  4444444444433332  1111100     00001


Q ss_pred             cchhhHHHHHHHHHHHhhc-hhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          349 FSGSLQLLGFCTFEACVGI-FWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       349 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                         ...+....+.....+. ..+..+.+..|.+|++.|+++.|+....
T Consensus       349 ---~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~  393 (451)
T PF00083_consen  349 ---ILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAV  393 (451)
T ss_pred             ---cccceeeeecccccccccccccccccccccccccccccccccccc
Confidence               1222333333333332 3477778999999999999999887764

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.75  E-value=4e-15  Score=143.00  Aligned_cols=329  Identities=16%  Similarity=0.107  Sum_probs=181.3

Q ss_pred             HHHhhcCCCcchhHHHHHHHHhhhhhcccccccccccc-CcchHHHHHHHHHHHHH-HHhcCc-cHHHHHHHHHHHHhHh
Q 012965           62 YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCLTYILSC-ITKHSP-QYKILMIGRILGGIAT  138 (452)
Q Consensus        62 ~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~-Grr~~l~~~~~~~~i~~-l~~~~~-~~~~l~~~r~l~G~~~  138 (452)
                      .+.+++|+++.+.+.+.........+..+++|+++||+ ||||++..+.++.+++. +++..+ +...+.++..+.+++.
T Consensus        35 yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~  114 (493)
T PRK15462         35 YLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGY  114 (493)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc
Confidence            33467899999999887777777778888999999999 99999999999998875 444433 2233444444555666


Q ss_pred             hhhhhhhhhhhhhhc-ccc-cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHH
Q 012965          139 SLLFSAFESWLVAEH-NKR-GFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIIL  216 (452)
Q Consensus       139 ~~~~~~~~~~~i~e~-~~r-~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~  216 (452)
                      |...+...+ +++|. +++ .++.+.    ++..+..++ +|..++|.+.+++.+.  ++|+..|.+.++..++..+...
T Consensus       115 G~~~~~~~a-lv~elfp~~~~~R~sg----f~i~Y~~~n-lG~~iap~l~g~L~~~--~Gw~~~F~iaaigm~l~li~~~  186 (493)
T PRK15462        115 GLFKSNVSC-LLGELYEPTDPRRDGG----FSLMYAAGN-VGSIIAPIACGYAQEE--YSWAMGFGLAAVGMIAGLVIFL  186 (493)
T ss_pred             ccccccHHH-HHHHHCCCCCccccce----ehHHHHHHH-HHHHHHHHHHHHHHhh--hChHHHHHHHHHHHHHHHHHHH
Confidence            666565534 77775 221 122221    222233333 5667777777777654  4567778776544443333222


Q ss_pred             h---ccccccC-CCCcchhHHHH---------------------HHHhh---------------------HHh-hcchhH
Q 012965          217 S---SWTENYG-DPSESKDLLTQ---------------------FRGAA---------------------VAI-ASDEKI  249 (452)
Q Consensus       217 ~---~~~~~~~-~~~~~~~~~~~---------------------~~~~~---------------------~~~-~~~~~~  249 (452)
                      .   ..++..+ ++++.++....                     ..+..                     +.. ..+|+-
T Consensus       187 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~r  266 (493)
T PRK15462        187 CGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQRKE  266 (493)
T ss_pred             HhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhh
Confidence            1   1122111 11111000000                     00000                     000 001221


Q ss_pred             HHHHHHHHhhh---chhhhhhhhhccccccCC-------CCCchHHHHHHHHHHHHHHhHHHHHHhccCCCC-c----hh
Q 012965          250 ALLGAIQSLFE---GSMYTFVFLWTPALSPND-------EEIPHGFIFATFMLASMLGSSLASRLMARSPPR-V----ES  314 (452)
Q Consensus       250 ~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~-~----~~  314 (452)
                      ....+...+..   ...|.+..+-+..|.++.       .+.++++.-+.+.+..++.+++.+++-.|..|| +    ..
T Consensus       267 ~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~  346 (493)
T PRK15462        267 LGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWG  346 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHH
Confidence            11111111111   111222222222232221       234567777888887777777777665554221 1    11


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhh
Q 012965          315 YMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRI  394 (452)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~  394 (452)
                      -..++..+.++++..+.......+++    .  ....++.+....+.+.+.-...|+..+.+++..|++.||..+|....
T Consensus       347 Kfa~g~~~~g~~f~~l~~~~~~~~~~----~--~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l  420 (493)
T PRK15462        347 KFALGLGLMSAGFCILTLSARWSAMY----G--HSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYML  420 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCC----C--CcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHH
Confidence            25566667777766554433321111    1  12334677888889999999999999999999999999999998754


Q ss_pred             ---hhhHHHHHHH
Q 012965          395 ---PLNIFVCVVL  404 (452)
Q Consensus       395 ---~~~~~~~~~l  404 (452)
                         ..+..+++.+
T Consensus       421 ~~~~~~~~~~g~~  433 (493)
T PRK15462        421 LSGAIANYLAGVI  433 (493)
T ss_pred             HHHHHHHHHHHHH
Confidence               2344444444

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.74  E-value=2.8e-15  Score=140.47  Aligned_cols=307  Identities=17%  Similarity=0.173  Sum_probs=197.6

Q ss_pred             hhhHHHHH-hhcCCCcchhHHHHHHHHhhhhhcccccccccc----ccCcchHH-HHHHHHHHHHH-HHhcCc------c
Q 012965           57 GPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLAD----KQGRKRAC-VTYCLTYILSC-ITKHSP------Q  123 (452)
Q Consensus        57 ~p~l~~i~-~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~D----r~Grr~~l-~~~~~~~~i~~-l~~~~~------~  123 (452)
                      .-++...+ +..|+++...|.++.+.-+.-.+..|+.|.++|    |+||||.. +.+.+..++.+ ++-.++      +
T Consensus        32 ~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k  111 (467)
T COG2211          32 VLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGK  111 (467)
T ss_pred             HHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcc
Confidence            34444444 678999999999999999999999999999999    57876554 55557777654 444444      3


Q ss_pred             HHHHHHHHHHHHhHhhhhhhhhhhhhhhh----cccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc-CCCcc
Q 012965          124 YKILMIGRILGGIATSLLFSAFESWLVAE----HNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSF-SLGPV  198 (452)
Q Consensus       124 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~e----~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~-~~~~~  198 (452)
                      ....++.-.+.+++.......-.+ +.+|    .++|.+..++-+.    ...+|..+...+.+++.....+.. .++|+
T Consensus       112 ~~ya~vtY~l~~l~YT~vniPy~a-l~~~iT~d~~ER~~l~s~R~~----~~~~g~~l~~~~~~plv~~~g~~~~~~g~~  186 (467)
T COG2211         112 LIYALVTYMLLGLGYTLVNIPYGA-LGPEITQDPQERASLTSWRMV----FASLGGLLVAVLFPPLVKLFGGGDKALGYQ  186 (467)
T ss_pred             hHHHHHHHHHHHHHHHheeCchhh-cchhhcCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCcchhhHH
Confidence            445566677788877766555434 4333    3566665554333    344444444455545555444433 56777


Q ss_pred             hhhHHHHHHHHHHHHHHHhccccccCCCCcchh-HHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccC
Q 012965          199 APFDAAACFLAIGMVIILSSWTENYGDPSESKD-LLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPN  277 (452)
Q Consensus       199 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  277 (452)
                      ....+.+++..+..++.++..+|+..+.++.++ .+.+.++.....++|+++...+....+.... +.........|.+.
T Consensus       187 ~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~-~~i~~s~~~yy~~y  265 (467)
T COG2211         187 GTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIA-FNIRGSIMVYYVTY  265 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHHHHHHHccchHHHHHHHHHHHHHH-HHHHhhhhheeEEE
Confidence            777777777777766666666665543332222 3344555666788898888877644443333 44445566666665


Q ss_pred             CCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhH
Q 012965          278 DEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQ  354 (452)
Q Consensus       278 ~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (452)
                      ..+.+.   .........+.+.+.++..++.+|+|+|+  ....+..+..++.....+....             ..+..
T Consensus       266 ~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~--~~~~~~~~~~i~~~~~~f~~~~-------------~~~l~  330 (467)
T COG2211         266 VLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKK--LFLIGLLLLAVGYLLLYFTPAG-------------SVVLI  330 (467)
T ss_pred             EcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHH--HHHHHHHHHHHHHHHHHhhcCc-------------chHHH
Confidence            555544   34445555667777899999999999888  3555555555555554443311             01356


Q ss_pred             HHHHHHHHHHhhchhhHHHHHHhhcCCccc
Q 012965          355 LLGFCTFEACVGIFWPSIMKMRSQYIPEEA  384 (452)
Q Consensus       355 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~  384 (452)
                      ++..++.+++.+..++..+++++|..+-++
T Consensus       331 ~~~~~i~~~g~~~~~~l~wam~~d~vDyge  360 (467)
T COG2211         331 VVALIIAGVGTGIANPLPWAMVADTVDYGE  360 (467)
T ss_pred             HHHHHHHHHHhhccccccHHHhcchhhHHH
Confidence            667788899999999999999999976544

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.74  E-value=5.3e-16  Score=153.97  Aligned_cols=301  Identities=15%  Similarity=0.064  Sum_probs=186.0

Q ss_pred             HhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHHhHhhhhh
Q 012965           64 YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLF  142 (452)
Q Consensus        64 ~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~  142 (452)
                      .+.+..+........++.+++..+++.++|+++||+|||++++.++++..++. ..++++|++.+++.|++.|++.+...
T Consensus       110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~  189 (521)
T KOG0255|consen  110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPL  189 (521)
T ss_pred             hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchh
Confidence            34556566666666666666666777789999999999999999999999965 77999999999999999999999998


Q ss_pred             hhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHhcc
Q 012965          143 SAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSW  219 (452)
Q Consensus       143 ~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  219 (452)
                      ..... ++.|.   ++|+.....         ......++.+++..++++.+    +||+.+++......+..+. +...
T Consensus       190 ~~~~~-~~~E~~~~~~R~~~~~~---------~~~~~~~~~~~~~~~a~~~~----~Wr~~~~~~~~~~~~~~~~-~~l~  254 (521)
T KOG0255|consen  190 TVGFG-LVAEIVSPKQRGLALTL---------GGFFFVGGLMLPAGAAYITR----DWRWLFWIISIPSGLFLLL-WFLP  254 (521)
T ss_pred             HHhHh-hheeecCcchhhHHHHH---------HHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHH-HHcc
Confidence            88855 78888   334443221         11233455666666666664    6677777766666654444 2223


Q ss_pred             cccc------CCCCcchhHHHHHH--------------H----------------hhHHhhcchhHHHHHHHHHhhhchh
Q 012965          220 TENY------GDPSESKDLLTQFR--------------G----------------AAVAIASDEKIALLGAIQSLFEGSM  263 (452)
Q Consensus       220 ~~~~------~~~~~~~~~~~~~~--------------~----------------~~~~~~~~~~~~~~~~~~~~~~~~~  263 (452)
                      ||.+      ++.+++.+..++..              .                ...+.++.++.........+.. ..
T Consensus       255 ~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~-~~  333 (521)
T KOG0255|consen  255 PESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIW-FV  333 (521)
T ss_pred             CcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHH-HH
Confidence            3422      22222111111110              0                0112233333222222222111 11


Q ss_pred             hhhhhhhccccccCCCCCchHHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcC
Q 012965          264 YTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVK  343 (452)
Q Consensus       264 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (452)
                      +. ..++.-.+.....+.+........+..........+...||.|||.  .......+..++++...+......     
T Consensus       334 ~~-~~y~gl~~~~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~--~~~~~~~~~~~~~~~~~~~~~~~~-----  405 (521)
T KOG0255|consen  334 FS-LVYYGLSLNVSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRP--PLFLSLFLAGIGLLLFGWLPDDLG-----  405 (521)
T ss_pred             Hh-HHHHhhhhhhhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHH--HHHHHHHHHHHHHHHHHHhhccch-----
Confidence            11 1223333334456666666666666678888888899999998887  355555555666665554443311     


Q ss_pred             CCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          344 SGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                        .     +...+...+..++.+..+...+.+..|.+|+..|..+.+..+..
T Consensus       406 --~-----~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~  450 (521)
T KOG0255|consen  406 --G-----WLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAA  450 (521)
T ss_pred             --h-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence              0     13344445555566666666799999999999999998887764

>PTZ00207 hypothetical protein; Provisional

Probab=99.73  E-value=9.8e-16  Score=149.59  Aligned_cols=105  Identities=12%  Similarity=0.057  Sum_probs=83.7

Q ss_pred             hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcC------ccHHHHHH
Q 012965           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS------PQYKILMI  129 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~------~~~~~l~~  129 (452)
                      +.+.+++.+++|+|.++++++.+.+...+ ...++.|++.||+|||+++.++.+++.++. +++++      ++++.+.+
T Consensus        47 sv~s~~L~~~lgls~~~l~~i~svg~~~g-~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l  125 (591)
T PTZ00207         47 NLISGAMQARYNLTQRDLSTITTVGIAVG-YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSV  125 (591)
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence            55567888999999999998887755543 456678999999999999999999999986 55665      68999999


Q ss_pred             HHHHHHhHhhhhhhhhhhhhhhhc--ccccchhhHH
Q 012965          130 GRILGGIATSLLFSAFESWLVAEH--NKRGFEQQWL  163 (452)
Q Consensus       130 ~r~l~G~~~~~~~~~~~~~~i~e~--~~r~~~~~~~  163 (452)
                      .|++.|++.+...+.... .+.++  ++|+...+..
T Consensus       126 ~r~l~G~G~~~~~~~~~~-~i~~~Fp~~RG~a~Gi~  160 (591)
T PTZ00207        126 YNGLMTLGCMLFDLGAVV-TVLSVFPSNRGAVVAIM  160 (591)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHhChhhhHHHHHHH
Confidence            999999999888777655 55666  5566655533

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.68  E-value=2.7e-14  Score=130.43  Aligned_cols=340  Identities=16%  Similarity=0.173  Sum_probs=197.5

Q ss_pred             chhhHHHHHHHHHHHHhhhhh----hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHH
Q 012965           36 NSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLT  111 (452)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~----~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~  111 (452)
                      -+.||.+++.+.+....++++    +|.-.+..+-|| +....-+...+...++...+.++-|+.||+|-|...+++..+
T Consensus        40 y~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~l  118 (480)
T KOG2563|consen   40 YPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVL  118 (480)
T ss_pred             chhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHH
Confidence            345777888888888888777    666555566778 444444665666666778888899999999999999999999


Q ss_pred             HHHHHHH---hcC----ccHH--HHHHHHHHHHhHhhhhhhhhhhhhhhhc----ccccchhhHHHHHHHHHHHHHHHHH
Q 012965          112 YILSCIT---KHS----PQYK--ILMIGRILGGIATSLLFSAFESWLVAEH----NKRGFEQQWLSITFSKAIFLGNGLV  178 (452)
Q Consensus       112 ~~i~~l~---~~~----~~~~--~l~~~r~l~G~~~~~~~~~~~~~~i~e~----~~r~~~~~~~~~~~~~~~~~g~~ig  178 (452)
                      ..++...   +..    +.++  ....+..+.+.+.-...... + -+++.    ++|.....    ....+..+|.++|
T Consensus       119 n~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lP-s-kiA~~WF~~~qra~A~~----~~v~~n~LGvavg  192 (480)
T KOG2563|consen  119 NGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLP-S-KIAAVWFPPDQRAIATV----LGVMGNPLGVAVG  192 (480)
T ss_pred             HHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccc-c-HHHHhhCCcchhhhhhh----HHHhcchHHHHHH
Confidence            9997532   222    2344  55667777776665554442 2 33433    33333222    2222333445555


Q ss_pred             HHHHHhhhhhhhcccCCCcch--hhHHHHHHHHHHHHHHHhccccccCCCCcchhHHH---HHHHhhHHhhcchhHHHHH
Q 012965          179 AILSGLFGNLLVDSFSLGPVA--PFDAAACFLAIGMVIILSSWTENYGDPSESKDLLT---QFRGAAVAIASDEKIALLG  253 (452)
Q Consensus       179 ~~~~~~l~~~l~~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  253 (452)
                      .++.|++...--+..+..|..  .|.....+..+.+.+.....+++++.++......+   +..+..+..++++++..+.
T Consensus       193 ~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~~~~f~~si~~~~~n~~F~il~  272 (480)
T KOG2563|consen  193 FLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQDASFPKSIKSCFKNRQFIILA  272 (480)
T ss_pred             hhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhhcCcHHHHHHHHHcCccHHHHH
Confidence            555554443321112333432  34444444444333333333333332222222222   2566777889999999888


Q ss_pred             HHHHhhhchhhhhhhhhcc-ccccCCCC-CchHHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHH
Q 012965          254 AIQSLFEGSMYTFVFLWTP-ALSPNDEE-IPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPI  331 (452)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~p-~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~  331 (452)
                      +......+.++.. .+.+. ..-..++. ...|.......+++++++.+.|.+.||.++-++ ..........+....+.
T Consensus       273 ~~ygi~~g~F~~l-~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~-~~~v~~~~~~v~~~~l~  350 (480)
T KOG2563|consen  273 ICYGIGLGLFNSL-STLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKL-TTLVLYLFALVGTLMLL  350 (480)
T ss_pred             HHHhhhHHHHHHH-HHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHH-HHHHHHHHHHHHHHHHH
Confidence            8877766666653 33332 22223332 345888888889999999999999999854442 22222222222212211


Q ss_pred             HHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          332 VTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      .......      .     .+.......++|++.....|+...+..|..=|..-++..|+.++.
T Consensus       351 ~~t~~~~------~-----~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~  403 (480)
T KOG2563|consen  351 TCTLFLG------D-----SVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLS  403 (480)
T ss_pred             HhhccCC------c-----eEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEee
Confidence            1111101      1     134555666777777778899898989985554555666666654

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.68  E-value=9e-15  Score=132.82  Aligned_cols=338  Identities=13%  Similarity=0.131  Sum_probs=199.9

Q ss_pred             HHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHH-HH-HHhcCcc--HH-HHHHHHHHHHhHhhhhhhhhhhhh
Q 012965           75 GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL-SC-ITKHSPQ--YK-ILMIGRILGGIATSLLFSAFESWL  149 (452)
Q Consensus        75 g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i-~~-l~~~~~~--~~-~l~~~r~l~G~~~~~~~~~~~~~~  149 (452)
                      |...++..+...+.+|+.|.++|+.|+||..........+ +. ...++++  ++ ..++.-.+..++.......-.+ +
T Consensus        61 gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds-~  139 (438)
T COG2270          61 GYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDS-M  139 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhh-H
Confidence            4555556666668889999999999988777766665554 33 4455443  44 4455566677766666555545 6


Q ss_pred             hhhcccccchhhHHHHHHHHHHHHHHHHHHHHH--Hhhhh----hh------hcccCCCcchhhHHHHHHHHHHHHHHHh
Q 012965          150 VAEHNKRGFEQQWLSITFSKAIFLGNGLVAILS--GLFGN----LL------VDSFSLGPVAPFDAAACFLAIGMVIILS  217 (452)
Q Consensus       150 i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~--~~l~~----~l------~~~~~~~~~~~f~~~~~~~~~~~~~~~~  217 (452)
                      +.+..++.+....-+..+..+.. |..+-.++.  ....+    ..      -+..+-.-|..+.+.++-.++..+.+..
T Consensus       140 L~~~~~k~~~~riS~lg~~~gyl-gs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~  218 (438)
T COG2270         140 LPRLTTKDNMGRISGLGWALGYL-GSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMIL  218 (438)
T ss_pred             hhhhcCccccCcccccccccccc-cchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHh
Confidence            55543332222111111221111 111111110  00000    00      0012334466666666666655555444


Q ss_pred             ccccccCCC-Cc---chhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCchH---HHHHHH
Q 012965          218 SWTENYGDP-SE---SKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHG---FIFATF  290 (452)
Q Consensus       218 ~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~---~~~~~~  290 (452)
                      ..++.++.. ++   -.+..++..++.++.++++....+.+...+..-+..+ .......|..+.+|.+..   ......
T Consensus       219 ~v~~~~~~~~~~~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~t-il~~~~~fg~~~~gls~~~lll~g~~~  297 (438)
T COG2270         219 NVHDAEKISSPPPTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNT-ILAMGGVFGAADLGLSSTELLLIGIAL  297 (438)
T ss_pred             cccccccccccchHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHH-HHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence            444433221 11   1234456667888888888888887777777766555 466677777777887663   344556


Q ss_pred             HHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhh
Q 012965          291 MLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWP  370 (452)
Q Consensus       291 ~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  370 (452)
                      .+..++|+++.|++.||+|.|+  ++..+.++....++...+....               ....+..++.|...|..+.
T Consensus       298 ~vvA~lg~ii~g~Ld~rfg~k~--vl~~~lvi~~~~~~~~~~~~~~---------------~~f~i~gll~g~s~G~~qA  360 (438)
T COG2270         298 SVVAALGAIIAGFLDERFGSKP--VLMIGLVILSIAALYLIFLEGE---------------LDFWILGLLVGTSLGGAQA  360 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhCCce--eehHHHHHHHHHHHHHHHcccc---------------HHHHHHHHHHHHhcchHHH
Confidence            6889999999999999999887  3556665555555554443332               2556667888999999999


Q ss_pred             HHHHHHhhcCCcccccchhhhhhhh------hhHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHhh
Q 012965          371 SIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNVDAFPITVMFGMCSIFLLVASVLQRRL  433 (452)
Q Consensus       371 ~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (452)
                      ..-++..+.+|+++-++.+|++++.      .++..-+...+.++. ....+....++..+......+.
T Consensus       361 ~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~-~r~g~~~i~vll~iGl~~L~~v  428 (438)
T COG2270         361 SSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS-SRAGVLSIIVLLLIGLLLLLRV  428 (438)
T ss_pred             HHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHhhHhhEEee
Confidence            9999999999999999999999885      333333444444443 3333333333444444444333

>TIGR01272 gluP glucose/galactose transporter

Probab=99.66  E-value=1.4e-14  Score=133.00  Aligned_cols=234  Identities=12%  Similarity=0.064  Sum_probs=144.2

Q ss_pred             cCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc---
Q 012965          120 HSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSF---  193 (452)
Q Consensus       120 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~---  193 (452)
                      ...+++.++++-++.|.|.+...+...+ ++++.   +++.++.+..+..        +++|..++|.+++.+....   
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~-~v~~~~~~~~~~~~l~~~~~~--------~~~G~~~gP~i~~~~i~~~~~~   76 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANP-YVSILGPIETAASRLALTQAF--------NKLGTTVAPLFGGSLILSGAGD   76 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHH-HHHHHCCcchHHHHHHHHHHH--------hhhHHHHHHHHHHHHHhcCCcc
Confidence            4578999999999999999999999978 87655   4455555544444        3355555555555544211   


Q ss_pred             -----------CCCcchhhHHHHHHHHHHH-HHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhc
Q 012965          194 -----------SLGPVAPFDAAACFLAIGM-VIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEG  261 (452)
Q Consensus       194 -----------~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (452)
                                 .++|+.+|.+.+.+..+.. .+.....||.+++++++.+..++  .+.+..+++|+.+...+..++..+
T Consensus        77 ~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~f~yvg  154 (310)
T TIGR01272        77 LSMQVATANAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVARVSSGDT--TQKTSAFQFTHLVLGALGIFVYVG  154 (310)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccccccccccc--cchhhHHhhHHHHHHHHHHHHHHH
Confidence                       1467888886554444333 33333455543332221111111  112235666776665444444443


Q ss_pred             hhhhhhhhhccccccCC--CCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 012965          262 SMYTFVFLWTPALSPND--EEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFL  336 (452)
Q Consensus       262 ~~~~~~~~~~p~~~~~~--~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (452)
                      .... ...|.+.|+++.  .+.++   +...+....+.++|+++.+++.||+++|+  .+..+..+..+...+... ...
T Consensus       155 ~e~~-~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~--~l~~~~~l~~~~~~l~~~-~~~  230 (310)
T TIGR01272       155 AEVS-AGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR--YLAFNAFLAVLLSIGAAL-THG  230 (310)
T ss_pred             HHHH-HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH--HHHHHHHHHHHHHHHHHH-cCC
Confidence            4333 588999998643  45544   56777888899999999999999999777  244443333333322211 111


Q ss_pred             cCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcc
Q 012965          337 VAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEE  383 (452)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~  383 (452)
                                     ........+.+++.+..+|...+...+..|++
T Consensus       231 ---------------~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~  262 (310)
T TIGR01272       231 ---------------YVAMWFVLALGLFNSIMFPTIFSLALNALGRH  262 (310)
T ss_pred             ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence                           12344666888999999999999999988875

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK11462 putative transporter; Provisional

Probab=99.66  E-value=5.4e-13  Score=129.76  Aligned_cols=293  Identities=15%  Similarity=0.135  Sum_probs=157.2

Q ss_pred             HhhcCCCcchhHHHHHHHHhhhhhccccccccccc----cCcchHHH-HHHHHHHHHH-HHhcCcc------HHHHHHHH
Q 012965           64 YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK----QGRKRACV-TYCLTYILSC-ITKHSPQ------YKILMIGR  131 (452)
Q Consensus        64 ~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr----~Grr~~l~-~~~~~~~i~~-l~~~~~~------~~~l~~~r  131 (452)
                      .+..|+++..+|.++.+.-+...+..|+.|.++||    +||||..+ .+.+..+++. ++-..++      ...+.+.-
T Consensus        37 t~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~  116 (460)
T PRK11462         37 TDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITY  116 (460)
T ss_pred             HHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence            36789999999999999999999999999999995    79876665 4556667665 3333332      33455555


Q ss_pred             HHHHhHhhhhhhhhhhhhhhhc----ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-ccCCCcchhhHHHHH
Q 012965          132 ILGGIATSLLFSAFESWLVAEH----NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD-SFSLGPVAPFDAAAC  206 (452)
Q Consensus       132 ~l~G~~~~~~~~~~~~~~i~e~----~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~-~~~~~~~~~f~~~~~  206 (452)
                      .+..++.......-.+ +..|.    ++|.+..++    ...+..+|..+++.+..++.....+ ....+|+....+.++
T Consensus       117 ~~~~~~~t~~~ipy~a-l~~~lt~d~~eRt~l~s~----r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~i  191 (460)
T PRK11462        117 TLLTLLYTVVNIPYCA-LGGVITNDPTQRISLQSW----RFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSV  191 (460)
T ss_pred             HHHHHHHHHHhccHHH-HHHHhcCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence            5666666666555434 44443    555554443    3333444444444444333322211 111345554555555


Q ss_pred             HHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhch--hhhhhhhhccccccCCCCCchH
Q 012965          207 FLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGS--MYTFVFLWTPALSPNDEEIPHG  284 (452)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~  284 (452)
                      +..++..+.....+|+.++++++.    +.++..+...+|+.++.+.....+....  .......|...|..+. ....+
T Consensus       192 i~~i~~~i~~~~~kE~~~~~~~~~----~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~  266 (460)
T PRK11462        192 VAFMMLAFCFFTTKERVEAPPTTT----SMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFV  266 (460)
T ss_pred             HHHHHHHHHHhcceeccCCCccCC----CHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHH
Confidence            554444444433454432222111    2345566778887776654333222221  1111223333333211 11123


Q ss_pred             HHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHH
Q 012965          285 FIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEAC  364 (452)
Q Consensus       285 ~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  364 (452)
                      .......+..+++.+++++++||+++|+.  .........+......+....         +    .+...+..++.+++
T Consensus       267 ~~l~~~~i~~iig~~l~~~l~~r~gkk~~--~~~~~~~~~~~~~~~~~~~~~---------~----~~~~~~~~~l~g~~  331 (460)
T PRK11462        267 AFLTTYCVGNLIGSALAKPLTDWKCKVTI--FWWTNALLAVISLAMFFVPMQ---------A----SITMFVFIFVIGVL  331 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhChHHH--HHHHHHHHHHHHHHHHHhchh---------H----HHHHHHHHHHHHHH
Confidence            45556667888899999999999998762  222222222222221111111         0    01223344556777


Q ss_pred             hhchhhHHHHHHhhcCC
Q 012965          365 VGIFWPSIMKMRSQYIP  381 (452)
Q Consensus       365 ~~~~~~~~~~~~~~~~p  381 (452)
                      .+...+..+++..|..+
T Consensus       332 ~~~~~~l~~~m~ad~~d  348 (460)
T PRK11462        332 HQLVTPIQWVMMSDTVD  348 (460)
T ss_pred             HHHHHHHHHHHHHHhHh
Confidence            66666777888888766

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.64  E-value=6.3e-15  Score=125.74  Aligned_cols=315  Identities=14%  Similarity=0.119  Sum_probs=177.7

Q ss_pred             HhhcCCCcchhHHHHHHHHhhhhhccccccccccc-cCcchHHHHHHHHHHHH-H---HHhcCccHHHHHHHHHHHHhHh
Q 012965           64 YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCLTYILS-C---ITKHSPQYKILMIGRILGGIAT  138 (452)
Q Consensus        64 ~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr-~Grr~~l~~~~~~~~i~-~---l~~~~~~~~~l~~~r~l~G~~~  138 (452)
                      ..|.+++.++..++++.......+...++|++.|| +|-|..-++-+....++ .   ..+..+.+|.+..+|++.|+|.
T Consensus        71 k~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGg  150 (459)
T KOG4686|consen   71 KLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGG  150 (459)
T ss_pred             hcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCc
Confidence            35677778888888888777777888889999996 67666544444444444 2   2256899999999999999986


Q ss_pred             hhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccC-C-----CcchhhHHH-HHHH
Q 012965          139 SLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS-L-----GPVAPFDAA-ACFL  208 (452)
Q Consensus       139 ~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~-~-----~~~~~f~~~-~~~~  208 (452)
                      -..-.+- ..+..-+   ++-+...+.+.+..-    +|..+-..+.+.+........+ -     |-...+-.- ....
T Consensus       151 ESlAVaQ-N~yav~wFKGKELn~vfGlqlSvAR----~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~s  225 (459)
T KOG4686|consen  151 ESLAVAQ-NKYAVYWFKGKELNFVFGLQLSVAR----LGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQS  225 (459)
T ss_pred             hhhhhhh-cceeEEEecCccccchhhHHHHHHH----hhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence            6664444 4364444   344444444333322    2222222223333222221111 0     100111110 0111


Q ss_pred             HHHHHHHHhccccccCCCCcchhHHHHHHH------hhHHh-hcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCC
Q 012965          209 AIGMVIILSSWTENYGDPSESKDLLTQFRG------AAVAI-ASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEI  281 (452)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  281 (452)
                      +++....  .+.+++     +++..++...      ...+. --.|++|.+.....+.....+.+ ....|.++++.+|.
T Consensus       226 lical~l--g~~D~r-----Aerilh~e~g~~Ge~pkLtdv~~f~ppfw~~~iicv~yyva~fPF-i~lg~~fF~~rfGl  297 (459)
T KOG4686|consen  226 LICALSL--GLSDDR-----AERILHLEEGFLGEEPKLTDVNTFYPPFWVLVIICVLYYVAWFPF-ITLGPMFFQKRFGL  297 (459)
T ss_pred             HHHHHHh--hhhhhH-----HHHHHhhhcCcccCCcccccccccCccHHHHHHHHHHHHHHHHHH-hhhhHHHHHHhhCC
Confidence            1111111  111111     1111000000      00011 11367888777776666665553 66778888888888


Q ss_pred             ch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHH
Q 012965          282 PH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGF  358 (452)
Q Consensus       282 ~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (452)
                      ++   +.+.+..-..+.+.+++.|.++||.|++-.  .....++..+..-...++...                --..++
T Consensus       298 S~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~--wv~~a~~~tl~~H~~l~Ft~l----------------sPy~~m  359 (459)
T KOG4686|consen  298 SAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLW--WVASACILTLLGHSGLFFTFL----------------SPYTSM  359 (459)
T ss_pred             ChhhccchhhhhhhhhhhhhhhHHHhHhhhcceeh--hHHHHHHHHHHHhhhHHhhhc----------------cHHHHH
Confidence            76   445555556677788899999999998762  333333333222222222222                236778


Q ss_pred             HHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhhhhH------HHHHHHhcccc
Q 012965          359 CTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNI------FVCVVLYNVDA  409 (452)
Q Consensus       359 ~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~------~~~~~l~~~~~  409 (452)
                      .+.|..+.......|..++..+|+++-|+++|+.+...|.      ++.+.+.+..+
T Consensus       360 ~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g  416 (459)
T KOG4686|consen  360 TFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG  416 (459)
T ss_pred             HHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence            8888888877777899999999999999999888765433      44555555544

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.57  E-value=1.5e-12  Score=121.19  Aligned_cols=328  Identities=18%  Similarity=0.186  Sum_probs=196.3

Q ss_pred             hhhhhhhhHHHHHhhcC----CCcchhHHHHHHHHhhhhhcccccccccccc-CcchHHHHHHHHHHHHH-HHhcC--cc
Q 012965           52 GDWLQGPYVYYLYSTYG----FGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCLTYILSC-ITKHS--PQ  123 (452)
Q Consensus        52 ~~~~~~p~l~~i~~~~g----~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~-Grr~~l~~~~~~~~i~~-l~~~~--~~  123 (452)
                      -++++.++..+++.+++    +|.++...+++.....-.+...++|+++||+ |+|+++.++.++..+|- +.+.+  .+
T Consensus        37 yYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~  116 (498)
T COG3104          37 YYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSG  116 (498)
T ss_pred             hhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccc
Confidence            45566777777777766    8888887766666555666777899999995 99999999999999995 45655  47


Q ss_pred             HHHHHHHHHHHHhHhhhhhhhhhhhhhhhc----ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcch
Q 012965          124 YKILMIGRILGGIATSLLFSAFESWLVAEH----NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVA  199 (452)
Q Consensus       124 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~----~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~  199 (452)
                      ...++++-.+.++|.|..-+...+ ++.|.    ++|  +.+-    ++. ...+..+|..++|.+.+++.++.+  |..
T Consensus       117 ~~gl~i~L~~I~iG~Gl~K~NiS~-llg~ly~~~Dpr--rD~g----Ft~-fY~~iNiGsl~~p~i~~~~~~~~g--~~~  186 (498)
T COG3104         117 PGGLYIGLALIIVGTGLFKPNISS-LLGELYPKDDPR--RDGG----FTL-FYMGINIGSLIAPIITGLLAINYG--WHV  186 (498)
T ss_pred             ccHHHHHHHHHHhccccccccHHH-HHHHhcCCCCcc--cCCC----ccE-EEEEeehHHHHHHHHHHHHHHhhC--HHH
Confidence            888999999999999999988866 77776    333  2221    221 122344666777777777776555  456


Q ss_pred             hhHHHHHHHHHHHHHHHhc---cccccCCCCcchhHHHHH---------------------HHhh---------------
Q 012965          200 PFDAAACFLAIGMVIILSS---WTENYGDPSESKDLLTQF---------------------RGAA---------------  240 (452)
Q Consensus       200 ~f~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---------------------~~~~---------------  240 (452)
                      .|...++-..+.++..+..   ...+..++++.....+..                     .+..               
T Consensus       187 gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~  266 (498)
T COG3104         187 GFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIY  266 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777766666555444321   111111111110000000                     0000               


Q ss_pred             -HHh------hcchhHHHHHHHHHhhhchhhh---hh----hhhccccccCC---CCCchHHHHHHHHHHHHHHhHHHHH
Q 012965          241 -VAI------ASDEKIALLGAIQSLFEGSMYT---FV----FLWTPALSPND---EEIPHGFIFATFMLASMLGSSLASR  303 (452)
Q Consensus       241 -~~~------~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~p~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~g~  303 (452)
                       .+.      ..+|+-....+..++....++.   +.    ..+.....+.+   .+.++++.-+.+.+.-++..++..+
T Consensus       267 ~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~  346 (498)
T COG3104         267 FAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAA  346 (498)
T ss_pred             HHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHH
Confidence             000      0222222222222222222121   11    12222222222   3345678888888888888877777


Q ss_pred             HhccCCCCc---h--hHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhh
Q 012965          304 LMARSPPRV---E--SYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQ  378 (452)
Q Consensus       304 l~dr~g~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  378 (452)
                      +..|.++++   .  .-..++..+++.+++.+.........     ++-..+.++.+..+++.+++.-+..|...+++.+
T Consensus       347 l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~-----~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~  421 (498)
T COG3104         347 LWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGG-----PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTK  421 (498)
T ss_pred             HHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcC-----CCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            777744331   1  12445556666666655544222111     1123334678888999999999999999999999


Q ss_pred             cCCcccccchhhhhhh
Q 012965          379 YIPEEARSTIMNFFRI  394 (452)
Q Consensus       379 ~~p~~~r~~~~g~~~~  394 (452)
                      ..|++..+..++..-.
T Consensus       422 laP~~~~s~~ma~wfL  437 (498)
T COG3104         422 LAPPALKSFIMAMWFL  437 (498)
T ss_pred             hChHHHHHHHHHHHHH
Confidence            9999988888876544

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.53  E-value=2.8e-12  Score=120.66  Aligned_cols=186  Identities=19%  Similarity=0.129  Sum_probs=121.0

Q ss_pred             ccchhhHHHHHHHHHHHHhhhhh----hhhHHHHHh--hcCCCcchhHHHHHHHHhhhhhccccccccccccCc-chHHH
Q 012965           34 AFNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYS--TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGR-KRACV  106 (452)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~----~p~l~~i~~--~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Gr-r~~l~  106 (452)
                      +.++.+|+.+.+..+..+....+    .|-.++-.+  |.+.+.+..|++.+..-++..+.++..|.+..|.++ |+.++
T Consensus        27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli  106 (488)
T KOG2325|consen   27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLI  106 (488)
T ss_pred             cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHH
Confidence            33455666555555555444444    333333333  577888888999998888888999999999999986 88888


Q ss_pred             HHHHHHHHHH-H--H-hc-Cc-cHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHH
Q 012965          107 TYCLTYILSC-I--T-KH-SP-QYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGL  177 (452)
Q Consensus       107 ~~~~~~~i~~-l--~-~~-~~-~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~i  177 (452)
                      .+.++..++. +  + .. .+ .-+.++++|++.|+|.+..... .+ |+++.   ++|.+..+.    .+.+..+|..+
T Consensus       107 ~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~l-R~-Y~a~~s~~~dR~rA~a~----~~~~~vlg~il  180 (488)
T KOG2325|consen  107 VSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVL-RA-YIADASTVEDRPRAFAA----TSGGFVLGIIL  180 (488)
T ss_pred             HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHH-HH-HHHhccCccchHHHHHH----hhhHHHHHHHH
Confidence            8988888874 2  2 23 33 5778999999999998887444 35 77775   555555553    33345566666


Q ss_pred             HHHHHHhhhhhhhcccC----CC---cchhhHHHHHHHHHHHHHHHhccccccCC
Q 012965          178 VAILSGLFGNLLVDSFS----LG---PVAPFDAAACFLAIGMVIILSSWTENYGD  225 (452)
Q Consensus       178 g~~~~~~l~~~l~~~~~----~~---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  225 (452)
                      |+.+.+.+++...+-..    ..   +..+-++.+++.++..+++....+|.+.+
T Consensus       181 Gp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~  235 (488)
T KOG2325|consen  181 GPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRG  235 (488)
T ss_pred             hHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccC
Confidence            66666666554332111    11   23455677777776666666666665443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.48  E-value=2.5e-10  Score=104.49  Aligned_cols=349  Identities=16%  Similarity=0.132  Sum_probs=199.1

Q ss_pred             HHhhcCCCcchhHHHHHHHHhhhhhccccccccccccC-----cchHHHHHHHHH-HHHH-HHh-----cCc-------c
Q 012965           63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQG-----RKRACVTYCLTY-ILSC-ITK-----HSP-------Q  123 (452)
Q Consensus        63 i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~G-----rr~~l~~~~~~~-~i~~-l~~-----~~~-------~  123 (452)
                      +..|++++..-.+.+....+.. ....+.+|+.+|+.+     ||..++....+. ..+. +..     ++.       +
T Consensus         6 MIvEL~vpA~lv~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~   84 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP   84 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence            3468999988888888888773 345778999999999     888777654433 3332 211     222       2


Q ss_pred             HH----HHHHHHHHHHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCC-Ccc
Q 012965          124 YK----ILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSL-GPV  198 (452)
Q Consensus       124 ~~----~l~~~r~l~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~-~~~  198 (452)
                      .+    ...+.-.+.|+|.+.......+ +++|..+++++.+.....+. ...    +|.+++....+.+.+.++- +-.
T Consensus        85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lA-Ll~D~~~e~~R~~~v~ivw~-Mli----~G~iv~ai~~g~lL~~~s~~rL~  158 (403)
T PF03209_consen   85 FWLGLALAALAFLLYGLGVHASGTSFLA-LLADLAPEERRPRVVAIVWV-MLI----VGIIVSAIVFGRLLDPFSPERLI  158 (403)
T ss_pred             cHHHHHHHHHHHHHHHhhHhHhHHHHHH-HHHhcCCHhhhhhhHHHHHH-HHH----HHHHHHHHHHHHHccccCHHHHH
Confidence            22    3345566777777777666645 67776333333333333333 233    3444444555544432221 111


Q ss_pred             hhhHHHHHHHHHHHHHHHhccccccCC--CCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhcccccc
Q 012965          199 APFDAAACFLAIGMVIILSSWTENYGD--PSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSP  276 (452)
Q Consensus       199 ~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  276 (452)
                      ..+...+++.....++.... .|++.+  .++.++...+.++.++++.++|+...+.....+.....+.. ...+-.|-.
T Consensus       159 ~v~~~~a~i~~~l~~ia~wg-~E~r~~~~~~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~Q-D~iLEPygg  236 (403)
T PF03209_consen  159 QVIQGVALIALLLNLIALWG-QEPRRSRRAAAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQ-DVILEPYGG  236 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-cccCCcccccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhh-HHHcCCchh
Confidence            12222222222222222212 222211  11122233345566777778888777766655555554442 445555777


Q ss_pred             CCCCCchH---HHHHHHHHHHHHHhHHHHHHhcc-CCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchh
Q 012965          277 NDEEIPHG---FIFATFMLASMLGSSLASRLMAR-SPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGS  352 (452)
Q Consensus       277 ~~~~~~~~---~~~~~~~i~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (452)
                      +.++.+.+   .+......+.+++-...+++..| .++++  ....+......++..+.......+            .+
T Consensus       237 ~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~--~a~~G~~~~~~~f~lii~a~~~~~------------~~  302 (403)
T PF03209_consen  237 EVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKR--TAALGCLLGALAFALIILAGPLGS------------PW  302 (403)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchH--HHHHHHHHHHHHHHHHHHHHhccc------------ch
Confidence            77888775   34455567788888888887774 44444  344555555555554444333311            14


Q ss_pred             hHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh------hhHHHHHHHhcc--------ccCCchHHHHH
Q 012965          353 LQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNV--------DAFPITVMFGM  418 (452)
Q Consensus       353 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~--------~~~~~~~~~~~  418 (452)
                      .+....+++|++.|.......+...+..++++.|..+|....+      .+...++.+.|.        ...+|..+|..
T Consensus       303 ~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~l  382 (403)
T PF03209_consen  303 LFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFAL  382 (403)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHH
Confidence            7888899999999998888889999999888888887776653      333555554321        22356666766


Q ss_pred             HHHHHHHHHHHHHhhh
Q 012965          419 CSIFLLVASVLQRRLM  434 (452)
Q Consensus       419 ~~~~~~~~~~~~~~~~  434 (452)
                      =++..+++..+..+..
T Consensus       383 Ea~ll~~a~~ll~~l~  398 (403)
T PF03209_consen  383 EAVLLLAALVLLGRLD  398 (403)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            6666666665555443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.44  E-value=6.5e-12  Score=120.83  Aligned_cols=165  Identities=13%  Similarity=0.128  Sum_probs=110.2

Q ss_pred             hhhHHHHHhhcCCCc--------chhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhc-Cc---c
Q 012965           57 GPYVYYLYSTYGFGK--------GEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH-SP---Q  123 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~--------~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~-~~---~  123 (452)
                      ..+.+...++.|.++        ++.+...+...+...++.++.|+++||+|||+++..+.++.+++. +... .+   +
T Consensus       228 ~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~  307 (418)
T TIGR00889       228 NIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFG  307 (418)
T ss_pred             HHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhh
Confidence            344445556666553        455777777776677777889999999999999999999888864 4443 22   2


Q ss_pred             HHHHHHHHHHHHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccC----CCcch
Q 012965          124 YKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS----LGPVA  199 (452)
Q Consensus       124 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~----~~~~~  199 (452)
                      ++.+++.+++.|++.+...+.... ++.|..+++.+....    +........+|..++|.+++.+.++.+    ++|+.
T Consensus       308 ~~~l~l~~~l~g~~~~~~~~~~~~-~i~~~~p~~~~g~~~----g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~  382 (418)
T TIGR00889       308 YALLFLSMIVYGCAFDFFNISGSV-FVEKEVPVHIRASAQ----GLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQT  382 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHH----HHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHH
Confidence            456778899999999888777644 777764333333322    212122344566666677777766544    67888


Q ss_pred             hhHHHHHHHHHHHHHHHhccccccCCC
Q 012965          200 PFDAAACFLAIGMVIILSSWTENYGDP  226 (452)
Q Consensus       200 ~f~~~~~~~~~~~~~~~~~~~~~~~~~  226 (452)
                      .|.+.+++.++..++..+.++|++++.
T Consensus       383 ~f~~~~~~~~i~~~l~~~~~~~~~~~~  409 (418)
T TIGR00889       383 MWLFFAGYIAILAVLFMIFFKYSHNAI  409 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence            888877777766666666677665443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.27  E-value=6.5e-09  Score=99.48  Aligned_cols=281  Identities=17%  Similarity=0.128  Sum_probs=161.9

Q ss_pred             HhhhhhccccccccccccCcchHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHhHhh--hhhhhhhhhhhhhc---ccc
Q 012965           82 FGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATS--LLFSAFESWLVAEH---NKR  156 (452)
Q Consensus        82 ~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~l~~~~~~~~~l~~~r~l~G~~~~--~~~~~~~~~~i~e~---~~r  156 (452)
                      .+.+.+.++..|.++||+|||..+........+...+....++|.++    +.|+..+  .......+ +++|.   ++|
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~~~~~~----~~~l~g~~~~~~s~~~a-~vadis~~~~R  146 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQGYWFFL----LLGLSGGFSAIFSVGFA-YVADISSEEER  146 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhh----hcccccchhhhhhhhhh-heeeccchhHH
Confidence            34466778889999999999999999999888876443333354444    4444322  22233334 66666   344


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHhccccccCCCCcc-------
Q 012965          157 GFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSES-------  229 (452)
Q Consensus       157 ~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  229 (452)
                      ....+.....        ...+..++|.+++.+.+..  +.-.+|.+..+...+.........||+..++++.       
T Consensus       147 ~~~~gll~~~--------~~~~~~~~p~~~~~~~~~~--~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~  216 (463)
T KOG2816|consen  147 SSSIGLLSGT--------FGAGLVIGPALGGYLVKFL--GIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLREL  216 (463)
T ss_pred             HHHHHHHHHH--------HHHHHhHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHhhccccccCcccccccccccc
Confidence            4444433222        2344455555666555443  3346788888888877777777788865544332       


Q ss_pred             ---hhHHHHHHHhh---HHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HHHHHHHHHHHHHHhHH
Q 012965          230 ---KDLLTQFRGAA---VAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSL  300 (452)
Q Consensus       230 ---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~  300 (452)
                         +.......+..   ....++|..+.+.....+....-.....-..+.|++..++.+.   +...+..+....++..+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~  296 (463)
T KOG2816|consen  217 TPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLL  296 (463)
T ss_pred             CCCcccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHH
Confidence               11111111111   1222344444444444444333222112134667777777765   45556666666777665


Q ss_pred             HH-HHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhc
Q 012965          301 AS-RLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQY  379 (452)
Q Consensus       301 ~g-~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  379 (452)
                      .. .+...+|.|+  ....+...-.+......+....               |. ...............|...+..+..
T Consensus       297 ~~~~l~~~l~~~~--~i~lGl~~~~~~~~~~af~~~~---------------w~-~~~~~v~~~~~~~~~pa~~s~~s~~  358 (463)
T KOG2816|consen  297 LLPLLSSILGEKR--LISLGLLSEFLQLLLFAFATET---------------WM-MFAAGVVVALAGIVFPAIRAFASIL  358 (463)
T ss_pred             HHHHHHHHHhhhh--HhhHHHHHHHHHHHHHHHhccc---------------hh-hhHHHHHHHhhcchhHHHHhHHHhh
Confidence            55 6777777666  3444444444444444333333               22 3333444556666789999999999


Q ss_pred             CCcccccchhhhhhhh
Q 012965          380 IPEEARSTIMNFFRIP  395 (452)
Q Consensus       380 ~p~~~r~~~~g~~~~~  395 (452)
                      .+++++|+++++.+..
T Consensus       359 v~~~e~g~v~~~is~i  374 (463)
T KOG2816|consen  359 VSPEEQGKVFGIISGI  374 (463)
T ss_pred             cccccccchhhHHHHH
Confidence            9999999999887764

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.24  E-value=1.5e-10  Score=111.92  Aligned_cols=145  Identities=12%  Similarity=0.054  Sum_probs=100.5

Q ss_pred             hhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHHhHhhhhhh
Q 012965           65 STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFS  143 (452)
Q Consensus        65 ~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~  143 (452)
                      ++.+.+..+.|.+.+...+...++.++.|++.||+|||+.+..+..+.+++. +.+++++.+.+++.+++.|++.+...+
T Consensus       255 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~  334 (420)
T PRK09528        255 ATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLV  334 (420)
T ss_pred             hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            3446666778887777766666777889999999999999999888888875 567889999999999999998887766


Q ss_pred             hhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHH
Q 012965          144 AFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIIL  216 (452)
Q Consensus       144 ~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~  216 (452)
                      .... ++.|..+++.+..    ....+...+..+|..+++.+.+++.+..  +|+..|...+++.++...+..
T Consensus       335 ~~~~-~~~~~~~~~~~a~----~~~~~~~~~~~lg~~ig~~~~G~l~~~~--G~~~~f~~~~~~~~i~~~~~~  400 (420)
T PRK09528        335 GVFK-YITLNFDVRLSAT----IYLVGFQFAKQLGAVFLSTLAGNLYDSI--GFQGTYLILGGIVLLFTLISV  400 (420)
T ss_pred             HHHH-HHHHHcCccceee----eeeehHHHHHHHHHHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHHHHHH
Confidence            6544 6666522222211    1111122345567777778888877654  567778776666655444443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.24  E-value=8.1e-10  Score=105.32  Aligned_cols=155  Identities=11%  Similarity=0.090  Sum_probs=113.3

Q ss_pred             HhhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHH
Q 012965           51 AGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMI  129 (452)
Q Consensus        51 ~~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~  129 (452)
                      ........+.|...+|.|.++.++|.+.....+...+..++.|++.||+|+|+.+..+.+..++.. +.++++|.+.+++
T Consensus       219 ~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  298 (382)
T TIGR00902       219 GAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFL  298 (382)
T ss_pred             HHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Confidence            333333455566667899999999988887777777777889999999999999999999999886 6688999999999


Q ss_pred             HHHHHHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHH
Q 012965          130 GRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLA  209 (452)
Q Consensus       130 ~r~l~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~  209 (452)
                      .+++.|+..+...+.... ++.+. ++..+.. .   ++.....+.++|..+++.+++.+.++.+  + ..|...+.+.+
T Consensus       299 ~q~l~g~~~~~~~~~~~~-~i~~~-~~~~~~~-~---q~~~~~~~~g~g~~~g~~~~G~l~~~~g--~-~~~~~~~~~~~  369 (382)
T TIGR00902       299 LQILHCGTFAVCHLAAMR-YIAAQ-PGSEIAK-L---QALYNALAMGGLIAIFTAFAGFIYPTLG--A-GTFVFMAIIAA  369 (382)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHhC-CHhhHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHhcc--H-HHHHHHHHHHH
Confidence            999999999999999866 77765 3333222 1   2222223456777778888888887554  3 44666666665


Q ss_pred             HHHHH
Q 012965          210 IGMVI  214 (452)
Q Consensus       210 ~~~~~  214 (452)
                      +..++
T Consensus       370 ~~~~~  374 (382)
T TIGR00902       370 AAFFL  374 (382)
T ss_pred             HHHHH
Confidence            55443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.21  E-value=1.4e-09  Score=104.19  Aligned_cols=151  Identities=12%  Similarity=0.078  Sum_probs=98.0

Q ss_pred             hhHHHH-HhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHH
Q 012965           58 PYVYYL-YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (452)
Q Consensus        58 p~l~~i-~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G  135 (452)
                      ...|.. .+++|.++.+.+.+.+.......++.++.|+++||+|||+.+..+.....+.. .....++.+.+++.+++.+
T Consensus       237 ~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  316 (393)
T PRK15011        237 INMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNA  316 (393)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            334443 46789999899877766666566677889999999999998877766555444 3355678888888999888


Q ss_pred             hHhhhhhhhhhhhhhhhc--ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHH
Q 012965          136 IATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMV  213 (452)
Q Consensus       136 ~~~~~~~~~~~~~~i~e~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~  213 (452)
                      ++.+...+.... +..|.  ++++...+.    .+..    ..+|..+++.+++.+.++  ++|+..|.+..+..++..+
T Consensus       317 ~~~g~~~~~~~~-~~~~~~p~~~g~~~~~----~~~~----~~lg~~~g~~l~G~i~~~--~g~~~~~~~~~~~~~~~~~  385 (393)
T PRK15011        317 IYIGILGGIGML-YFQDLMPGQAGSATTL----YTNT----SRVGWIIAGSLAGIVAEI--WNYHAVFWFALVMIIATLF  385 (393)
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCcchHHHH----HHHH----HHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHH
Confidence            887776665533 55665  334443332    2222    234555555666666654  4567778777766666555


Q ss_pred             HHHhccc
Q 012965          214 IILSSWT  220 (452)
Q Consensus       214 ~~~~~~~  220 (452)
                      ... +.|
T Consensus       386 ~~~-~~~  391 (393)
T PRK15011        386 CLL-RIK  391 (393)
T ss_pred             HHH-hhc
Confidence            544 444

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.17  E-value=4.7e-08  Score=90.83  Aligned_cols=330  Identities=15%  Similarity=0.128  Sum_probs=183.6

Q ss_pred             hHHHHHHHHHHHHhhhhh-hhhHHHH-Hh-hcCCCcchhH-H---HHHHHHhhhhhccccccccccccCcchHHHHHHHH
Q 012965           39 KNNYLLVYSLMMAGDWLQ-GPYVYYL-YS-TYGFGKGEIG-Q---LFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLT  111 (452)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~-~p~l~~i-~~-~~g~s~~~~g-~---~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~  111 (452)
                      ++..+.+|....+-+.=. -|++.+. .+ +.|++..|+. -   +.+-.++   ..-.+...+.|..+.|++++++.+.
T Consensus         4 ~~~~~llc~~gf~~~frPsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl---~~l~~vflltd~l~Ykpviil~~~~   80 (412)
T PF01770_consen    4 KKITLLLCLFGFFKEFRPSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYL---AFLLPVFLLTDYLRYKPVIILQALS   80 (412)
T ss_pred             hHHHHHHHHHHHHHhcCCCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            334444444443332222 4555333 34 4899988886 2   2223333   2333688999999999999999998


Q ss_pred             HHHHH-HHhcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 012965          112 YILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLV  190 (452)
Q Consensus       112 ~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~  190 (452)
                      ..+.. +.-+.++.+.+-+..++.|++.+....-. + ++-...++++.....+ .......+|..++.++|    ..+.
T Consensus        81 ~i~t~~lll~~~sv~~mq~~q~~yg~~~a~evay~-s-Yiys~v~~~~yq~vts-~~raa~l~g~~~s~~lg----Qllv  153 (412)
T PF01770_consen   81 YIITWLLLLFGTSVLAMQLMQFFYGLATAAEVAYY-S-YIYSVVDKEHYQKVTS-YTRAATLVGRFISSLLG----QLLV  153 (412)
T ss_pred             HHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHH-H-HheeecCHHHHHHHHH-HHHHHHHHHHHHHHHHH----HHHH
Confidence            88875 66888999999999999999998875443 4 4332222222222111 12223344444444444    4444


Q ss_pred             cccCCCcchhhHHHHHHHHHHHHHHHhccccccC-------------------CC-Cc---ch---------------hH
Q 012965          191 DSFSLGPVAPFDAAACFLAIGMVIILSSWTENYG-------------------DP-SE---SK---------------DL  232 (452)
Q Consensus       191 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-------------------~~-~~---~~---------------~~  232 (452)
                      ...+...+....+......++.++.. .+|..++                   ++ ++   .+               +.
T Consensus       154 s~~~~sy~~L~~isl~~~~~a~~~~~-fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (412)
T PF01770_consen  154 SFGGVSYFQLNYISLASVSLALLIAL-FLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSV  232 (412)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHH-HcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHH
Confidence            32334444444444333333322222 1221000                   00 00   00               01


Q ss_pred             HHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCC---CC--CchHHHHHHHHHHHHHHhHHHHHHhcc
Q 012965          233 LTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPND---EE--IPHGFIFATFMLASMLGSSLASRLMAR  307 (452)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~--~~~~~~~~~~~i~~~~~~~~~g~l~dr  307 (452)
                      .++..++.++..++|+.+...+-..+...+ +..+.+|....-++.   .+  .--|.+-+...+.+.++.+..|++..+
T Consensus       233 l~~l~~~~~~~y~~~~ll~WSlWWa~atcg-y~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~  311 (412)
T PF01770_consen  233 LRLLWKDFKSCYSNPRLLLWSLWWAFATCG-YYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVN  311 (412)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHhH-HHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcc
Confidence            112233445556677776666555544444 333344433332222   11  112777777778888888999998666


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccc
Q 012965          308 SPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARST  387 (452)
Q Consensus       308 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~  387 (452)
                      +.+..+..+.....+.+..+.+.....+.               |...++.++++..+....++....++....++.-+.
T Consensus       312 w~~~~~l~l~~~S~l~a~~L~lm~~t~~I---------------wv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaL  376 (412)
T PF01770_consen  312 WDRWGELALGVFSLLQAGLLFLMSFTGNI---------------WVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYAL  376 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceee
Confidence            66554323333333334444443333333               678888999998888888888888888888888899


Q ss_pred             hhhhhhhh
Q 012965          388 IMNFFRIP  395 (452)
Q Consensus       388 ~~g~~~~~  395 (452)
                      .+|++.+.
T Consensus       377 VFGiNtf~  384 (412)
T PF01770_consen  377 VFGINTFV  384 (412)
T ss_pred             eeeeHHHH
Confidence            98885543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.16  E-value=1.6e-08  Score=97.36  Aligned_cols=323  Identities=15%  Similarity=0.060  Sum_probs=161.8

Q ss_pred             hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccC-----cchHHHHHHHHHHHHH-HHhc----CccHHH
Q 012965           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQG-----RKRACVTYCLTYILSC-ITKH----SPQYKI  126 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~G-----rr~~l~~~~~~~~i~~-l~~~----~~~~~~  126 (452)
                      .+..|.+.+++|+++++.........+.. ..-|+.|.++|.+-     ||+-++++.++.+++. ..+.    ..+...
T Consensus        10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~   88 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI   88 (433)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence            44556778999999999987766665533 44678999999763     4444555655554443 2222    346667


Q ss_pred             HHHHHHHHHhHhhhhhhhhhhhhhhhcccc-cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHH
Q 012965          127 LMIGRILGGIATSLLFSAFESWLVAEHNKR-GFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAA  205 (452)
Q Consensus       127 l~~~r~l~G~~~~~~~~~~~~~~i~e~~~r-~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~  205 (452)
                      ..+.-++..+|.......+.+ ++.|..+| ....+..++.....    ..+|.+++..+++.+.+..+  ++..|.+.+
T Consensus        89 ~~~~l~la~~g~a~~DV~aDa-~vvE~~~~~p~~~g~lqS~~~~~----~~~G~lv~~~l~G~l~~~~~--~~~~f~i~~  161 (433)
T PF03092_consen   89 AVVLLFLASFGYAFADVAADA-LVVELARREPESRGDLQSFVWGV----RSVGSLVGSLLSGPLLDSFG--PQGVFLISA  161 (433)
T ss_pred             HHHHHHHHHHHHHHHHHhhhH-HHHHHhhcCCchhHHHHHHHHHH----HHHHHHHHHHhhhhhhhcCC--CeEEehHHH
Confidence            777788889999999888877 77776222 22233333333333    33455555566666665444  455566666


Q ss_pred             HHHHHHHHHHHhccccccCCC--------Cc-chhH---HHHHHHhhHHhhcchhHHHHHH-HHHhhhchhhhh-h-hhh
Q 012965          206 CFLAIGMVIILSSWTENYGDP--------SE-SKDL---LTQFRGAAVAIASDEKIALLGA-IQSLFEGSMYTF-V-FLW  270 (452)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~-~~~  270 (452)
                      .+..+..+......+|++.++        ++ .+..   .++.....++.++++..+.... ..++........ . ..|
T Consensus       162 ~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy  241 (433)
T PF03092_consen  162 ALPLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFY  241 (433)
T ss_pred             HHHHHHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEE
Confidence            555554443333334311111        00 0000   1222334455566666665544 222222111110 0 111


Q ss_pred             ccccccCCCCCchH---HHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHH-HHHhhhcCCCCcCCCC
Q 012965          271 TPALSPNDEEIPHG---FIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLP-IVTSFLVAPSNVKSGG  346 (452)
Q Consensus       271 ~p~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  346 (452)
                      ......++.+.++.   ....+..++.++|..+..+...+..-|+   +.....+......+. .......+..- .-++
T Consensus       242 ~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~---~~~~t~~~~~~~~l~~~~lv~~~n~~~-Gi~d  317 (433)
T PF03092_consen  242 FQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRR---IFVVTTLVSVLASLFDLLLVTRWNLDL-GIPD  317 (433)
T ss_pred             EEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH---HHHHHHHHHHHHhcccEEEEEEEeeee-CcCC
Confidence            11111113335553   3334444556666666666555554443   222222222111111 00000000000 0000


Q ss_pred             cccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          347 ISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       347 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      .    +..+.-..+.....+..+-+...+++|+.|+..-|+.+++....
T Consensus       318 ~----~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~  362 (433)
T PF03092_consen  318 Q----WFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASF  362 (433)
T ss_pred             e----EEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence            0    12233344455555555556778899999999999888776654

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.15  E-value=2.3e-09  Score=102.87  Aligned_cols=147  Identities=20%  Similarity=0.252  Sum_probs=92.8

Q ss_pred             hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHH
Q 012965           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G  135 (452)
                      .++++...++.|.+  +.+.......+...++.++.|++.||+|||+.+..+..+.+++. +..+.++.+.+++.+++.|
T Consensus       236 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  313 (399)
T PRK05122        236 ATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTG  313 (399)
T ss_pred             HHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            34444555566653  33433344444445666789999999999999988888777775 5567788888888999999


Q ss_pred             hHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHH
Q 012965          136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM  212 (452)
Q Consensus       136 ~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~  212 (452)
                      ++.+...+.... ...|.   ++|++..+    ..+..    ..+|..+++.+.+.+.+.  ++|+..+...+...++..
T Consensus       314 ~~~~~~~~~~~~-~~~~~~~~~~~g~~~g----~~~~~----~~~g~~~~~~~~g~l~~~--~g~~~~~~~~~~~~~~~~  382 (399)
T PRK05122        314 FGFSLVFPALGV-EAVKRVPPQNRGAALG----AYSVF----LDLSLGITGPLAGLVASW--FGYPSIFLAAALAALLGL  382 (399)
T ss_pred             HhHHHHHHHHHH-HHHHhCCHHHHHHHHH----HHHHH----HHHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHH
Confidence            999988776544 44444   33344333    22222    334444445555565543  456677777766666555


Q ss_pred             HHHH
Q 012965          213 VIIL  216 (452)
Q Consensus       213 ~~~~  216 (452)
                      ....
T Consensus       383 ~~~~  386 (399)
T PRK05122        383 ALTW  386 (399)
T ss_pred             HHHH
Confidence            4444

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.14  E-value=4.2e-09  Score=100.15  Aligned_cols=144  Identities=14%  Similarity=0.169  Sum_probs=95.4

Q ss_pred             HHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHHhHhhhh
Q 012965           63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLL  141 (452)
Q Consensus        63 i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~  141 (452)
                      +.+++|.++.+.+.+.........++.++.|++.||+|||+.+..+.+...+.. ...+.++.+.+.+.+++.|++.+..
T Consensus       226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  305 (375)
T TIGR00899       226 IIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGIL  305 (375)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346789999999877666655555666789999999999999888776655544 3455678888888999999998887


Q ss_pred             hhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHH
Q 012965          142 FSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVII  215 (452)
Q Consensus       142 ~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~  215 (452)
                      .+.... +..|..++++. . .....+..    ..+|..+++.+.+.+.+..  +|+..|...++..++..+..
T Consensus       306 ~~~~~~-~~~~~~~~~~~-~-~~~~~~~~----~~~g~~~g~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~  370 (375)
T TIGR00899       306 AGIGML-YFQDLMPGRAG-A-ATTLYTNT----GRVGWIIAGSVGGILAERW--SYHAVYWFAIVMLIVALFCL  370 (375)
T ss_pred             HHHHHH-HHHHhCcchhh-H-HHHHHHHH----HHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHH
Confidence            776644 66665322221 1 11122222    2255566666666666543  55677777776666555444

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.13  E-value=5.9e-09  Score=99.41  Aligned_cols=148  Identities=12%  Similarity=0.101  Sum_probs=103.5

Q ss_pred             hhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHHh
Q 012965           58 PYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGI  136 (452)
Q Consensus        58 p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~  136 (452)
                      .+.+...+|.|.++.+.|...+.......+...+.|++.||+|+|+.+..+....+++. +.+..++.+.+++..++.|+
T Consensus       226 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  305 (382)
T PRK11128        226 GFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCG  305 (382)
T ss_pred             HHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            34445557899999999988887777677777889999999999999999988888875 55788999999999999999


Q ss_pred             HhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHH
Q 012965          137 ATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVI  214 (452)
Q Consensus       137 ~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~  214 (452)
                      +.+...+.... ++.+.+ +++....    .+.....+...|..+++.+++.+.+..++   ..+...+.+.++....
T Consensus       306 ~~~~~~~~~~~-~~~~~~-~~~~~~~----~~~~~~~~~~~g~~ig~~i~G~l~~~~g~---~~~~~~~~~~~~~~~~  374 (382)
T PRK11128        306 TFTVCHLAAMR-YIAARP-GSEVIRL----QALYSALAMGGSIAIMTVLSGFLYQHLGA---GVFWVMALVALPALFI  374 (382)
T ss_pred             HHHHHHHHHHH-HHHHCC-HhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHH
Confidence            99988777655 666542 2222221    22222233445666777778887765543   3455555555544433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.13  E-value=6e-09  Score=99.68  Aligned_cols=160  Identities=14%  Similarity=0.086  Sum_probs=98.4

Q ss_pred             hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHh-cCccHHHHHHHHHHH
Q 012965           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK-HSPQYKILMIGRILG  134 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~-~~~~~~~l~~~r~l~  134 (452)
                      ...+|...+++|.+..+.|...+...+.+.++.+..|++.||+|||+.+..+..+..++. +.. +.++...+.  -++.
T Consensus       225 ~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~l~  302 (393)
T PRK09705        225 IAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW--AMVC  302 (393)
T ss_pred             HHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH--HHHH
Confidence            444566667789999999988787777777888899999999999999988877776664 333 333333222  3456


Q ss_pred             HhHhhhhhhhhhhhhhhhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHH
Q 012965          135 GIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMV  213 (452)
Q Consensus       135 G~~~~~~~~~~~~~~i~e~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~  213 (452)
                      |++.+...+.... ...+. .+++.+...    .+.....+ .++..++|.+.+++.+..+ ++...|.+.++..++...
T Consensus       303 g~g~g~~~~~~~~-~~~~~~~~~~~~g~~----~g~~~~~~-~~~~~~gp~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~  375 (393)
T PRK09705        303 GLGLGGAFPLCLL-LALDHSVQPAIAGKL----VAFMQGIG-FIIAGLAPWFSGVLRSISG-NYLMDWAFHALCVVGLMI  375 (393)
T ss_pred             HHhccchHHHHHH-HHHhhcCCHHHHHHH----HHHHHHHH-HHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHH
Confidence            7887777776544 33333 222222222    22222222 2445566677777776544 245666666666655555


Q ss_pred             HHHhccccccCC
Q 012965          214 IILSSWTENYGD  225 (452)
Q Consensus       214 ~~~~~~~~~~~~  225 (452)
                      ......||++++
T Consensus       376 ~~~~~~~~~~~~  387 (393)
T PRK09705        376 ITLRFAPARFPQ  387 (393)
T ss_pred             HHHHhccccccc
Confidence            555456665544

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.12  E-value=4.3e-09  Score=101.37  Aligned_cols=150  Identities=18%  Similarity=0.133  Sum_probs=97.0

Q ss_pred             hhhHHHHHhhcCCCcchh----HHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHH
Q 012965           57 GPYVYYLYSTYGFGKGEI----GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGR  131 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~~----g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r  131 (452)
                      .+.++...++.+.+..+.    +.+.....+.+.+..+..|++.||+|||+.+..+..+..++. ...+.++.+.+.+.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (408)
T PRK09874        239 APILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILR  318 (408)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            455555445543333332    334344445555677789999999999999998888777765 456678888889999


Q ss_pred             HHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHH
Q 012965          132 ILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFL  208 (452)
Q Consensus       132 ~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~  208 (452)
                      ++.|++.+...+...+ .+.+.   +++++..+....    ...    +|..++|.+++.+.+.  ++|+..|.+.+++.
T Consensus       319 ~~~g~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~----~~~----~g~~~gp~~~G~l~~~--~g~~~~f~~~~~~~  387 (408)
T PRK09874        319 FLLGAADGALLPAVQT-LLVYNSSNQIAGRIFSYNQS----FRD----IGNVTGPLMGAAISAN--YGFRAVFLVTAGVV  387 (408)
T ss_pred             HHHHhhhHhhHHHHHH-HHHHhCCcccceeeehHHHH----HHH----HHHHhhHHHHHHHHhh--cchhHHHHHHHHHH
Confidence            9999999988887655 54443   345555443322    223    4445555666665543  45677888887777


Q ss_pred             HHHHHHHHh
Q 012965          209 AIGMVIILS  217 (452)
Q Consensus       209 ~~~~~~~~~  217 (452)
                      ++..+....
T Consensus       388 l~~~~~~~~  396 (408)
T PRK09874        388 LFNAVYSWN  396 (408)
T ss_pred             HHHHHHHHH
Confidence            766655543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.11  E-value=7.7e-09  Score=99.90  Aligned_cols=156  Identities=17%  Similarity=0.073  Sum_probs=100.4

Q ss_pred             hhHHHHHhh-cCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHH
Q 012965           58 PYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (452)
Q Consensus        58 p~l~~i~~~-~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G  135 (452)
                      ..+|...++ +|.++.+.|.+.+...+...+++++.|++.||.++|+.+..+..+.+++. +..+.++.+...++.++.|
T Consensus       244 ~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  323 (417)
T PRK10489        244 VLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFG  323 (417)
T ss_pred             HhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence            344555565 89999999988777777677778889999999888888888877777765 5577888888888899999


Q ss_pred             hHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHH
Q 012965          136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM  212 (452)
Q Consensus       136 ~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~  212 (452)
                      ++.+...+...+ ++.|.   +.|++..+.    .+....    +|..+++.+.+.+.+..  +.+..+...+...++..
T Consensus       324 ~~~~~~~~~~~~-~~~~~~p~~~~g~~~g~----~~~~~~----~g~~~g~~l~G~l~~~~--g~~~~~~~~~~~~~~~~  392 (417)
T PRK10489        324 YLSAISSLLQYT-LLQTQTPDEMLGRINGL----WTAQNV----TGDAIGAALLGGLGAMM--TPVASASASGFGLLIIG  392 (417)
T ss_pred             HHHHHHHHHHHH-HHHhhCCHHHHHHHHHH----HHHHHh----hhHhHHHHHHHHHHHHh--chhhHHHHHHHHHHHHH
Confidence            988877665544 66655   334444432    222333    34444455555555433  44455655555444443


Q ss_pred             HHHHhccccccC
Q 012965          213 VIILSSWTENYG  224 (452)
Q Consensus       213 ~~~~~~~~~~~~  224 (452)
                      .......|+.++
T Consensus       393 ~~~~~~~~~~~~  404 (417)
T PRK10489        393 VLLLLVLGELRR  404 (417)
T ss_pred             HHHHHhcccccc
Confidence            444334455443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.10  E-value=1.2e-08  Score=97.33  Aligned_cols=149  Identities=17%  Similarity=0.151  Sum_probs=98.6

Q ss_pred             hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHh
Q 012965           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGI  136 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~l~~~~~~~~~l~~~r~l~G~  136 (452)
                      ..++|...++.|.++++.|...+...+...+++.+.|++.||+|+|+++..+..+.+++.+... + ........++.|+
T Consensus       220 ~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~l~g~  297 (381)
T PRK03633        220 YGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-S-QAAMAPALFILGA  297 (381)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-h-hHHHHHHHHHHHH
Confidence            3455666677899998999877777777778888899999999999999888877777643222 2 2344457788888


Q ss_pred             HhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHH
Q 012965          137 ATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVII  215 (452)
Q Consensus       137 ~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~  215 (452)
                      +.....|...+ .+.|..++++..+..    + ....+..+|..++|.+++.+.++.+  ++..|.+.+.+.++.....
T Consensus       298 ~~~~~~p~~~~-~~~~~~~~~~~~~~~----~-~~~~~~~lG~~igp~~~G~l~~~~g--~~~~f~~~~~~~l~~~~~~  368 (381)
T PRK03633        298 AGFTLYPVAMA-WACEKVEHHELVAMN----Q-ALLLSYTVGSLLGPSFTAMLMQNYS--DNLLFIMIASVSFIYLLML  368 (381)
T ss_pred             HHHhHHHHHHH-HHHccCCHHHHHHHH----H-HHHHHHHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHH
Confidence            77777777755 566653333322211    1 2223455677777788887776554  4566777666665544443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.09  E-value=3.3e-09  Score=100.77  Aligned_cols=142  Identities=15%  Similarity=0.108  Sum_probs=95.2

Q ss_pred             hHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccH--HHHHHHHHHHH
Q 012965           59 YVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQY--KILMIGRILGG  135 (452)
Q Consensus        59 ~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~--~~l~~~r~l~G  135 (452)
                      ..+...+++|.++.+.+...+...+...++.++.|++.||+|||+.+..+..+.+++. +..+.++.  ..+....++.|
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  306 (377)
T TIGR00890       227 LYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVF  306 (377)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHH
Confidence            3445567889888888887777777777888899999999999999999888887765 44555532  33456678888


Q ss_pred             hHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHH
Q 012965          136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIG  211 (452)
Q Consensus       136 ~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~  211 (452)
                      ++.+...+.... ++.|.   ++|++..+..    +    ....+|..+++.+.+.+.++.  +|+..|.+.+++.+++
T Consensus       307 ~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~----~----~~~~~g~~~~~~~~g~l~~~~--g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       307 FTWGGTISLFPS-LVSDIFGPANSAANYGFL----Y----TAKAVAGIFGGLIASHALTEI--GFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHhccchhccHH-HHHHHhhhhhhhhHhHHH----H----HHHHHHHHHHHHHHHHHHhhh--chhhHHHHHHHHHHHh
Confidence            888777665534 66665   4444444322    2    223456666666666666544  4567777766655543

>PRK03545 putative arabinose transporter; Provisional

Probab=99.08  E-value=1.2e-08  Score=97.70  Aligned_cols=141  Identities=14%  Similarity=0.066  Sum_probs=91.2

Q ss_pred             HhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHH-H-HHhcCccHHHHHHHHHHHHhHhhhh
Q 012965           64 YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILS-C-ITKHSPQYKILMIGRILGGIATSLL  141 (452)
Q Consensus        64 ~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~-~-l~~~~~~~~~l~~~r~l~G~~~~~~  141 (452)
                      .+++|.|..+.+.+.+...+.+.+++++.|++.||+|||+.. .+..+..++ . +....++.+.+.+..++.|++.+..
T Consensus       233 ~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~  311 (390)
T PRK03545        233 QQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCI  311 (390)
T ss_pred             HHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcc
Confidence            455799998898887777777778888899999999988654 444444443 2 3356778888888999999988766


Q ss_pred             hhhhhhhhhhhc--ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHH
Q 012965          142 FSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIIL  216 (452)
Q Consensus       142 ~~~~~~~~i~e~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~  216 (452)
                      .+.... .+.|.  ++|++..+    ..+....    +|..+++.+++.+.++  ++++..|...+.+.++......
T Consensus       312 ~~~~~~-~~~~~~~~~~~~~~g----~~~~~~~----~g~~~G~~~~G~~~~~--~g~~~~~~~~~~~~~~~~~~~~  377 (390)
T PRK03545        312 GLAMQV-KVLKLAPDATDVAMA----LFSGIFN----IGIGAGALLGNQVSLH--LGLSSIGYVGAALALAALVWSI  377 (390)
T ss_pred             hHHHHH-HHHHhCCCcHHHHHH----HHHHHHH----HHHHHHHHHHHHHHhc--cChhHHHHHHHHHHHHHHHHHH
Confidence            665544 55554  23333222    2332333    3444455666666644  5667778777777666555544

>PRK03699 putative transporter; Provisional

Probab=99.07  E-value=5.8e-09  Score=99.89  Aligned_cols=145  Identities=12%  Similarity=0.082  Sum_probs=96.8

Q ss_pred             hhHHHHH-hhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHH
Q 012965           58 PYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (452)
Q Consensus        58 p~l~~i~-~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G  135 (452)
                      ..+|... +++|+|+.+.+.+.+...+...++.++.|+++||+|||+.+.....+..+.. +....++.+.+.+..++.|
T Consensus       226 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  305 (394)
T PRK03699        226 SWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLG  305 (394)
T ss_pred             HHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            4455555 6789999999988777777777888889999999999999888777666654 4456777777777788899


Q ss_pred             hHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHH
Q 012965          136 IATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIG  211 (452)
Q Consensus       136 ~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~  211 (452)
                      ++.+...+...+ +..|..++.. ...    .+... ....+|..++|.+.+.+.+..+  ++..++..+++.++.
T Consensus       306 ~~~~~~~~~~~~-~~~~~~~~~~-~~~----~g~~~-~~~~~g~~i~p~~~G~l~~~~g--~~~~~~~~~~~~~~~  372 (394)
T PRK03699        306 FFSSAIYTTIIT-LGSQQTKVAS-PKL----VNFIL-TCGTIGTMLTFVVTSPIVAHFG--LQAALLTANGLYAVV  372 (394)
T ss_pred             HHHHHHHHHHHH-HHHHHccCCC-HHH----HHHHH-HhhhHHHHHHHHHHHHHHHHhC--chhhhhhhHHHHHHH
Confidence            888877776544 4444422111 111    11111 2234677777788887776544  456666555554444

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.07  E-value=7.4e-09  Score=99.65  Aligned_cols=147  Identities=15%  Similarity=0.127  Sum_probs=98.2

Q ss_pred             hHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHHhH
Q 012965           59 YVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIA  137 (452)
Q Consensus        59 ~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~  137 (452)
                      ..|...++.|.++.+.+.......+.+.+++++.|++.||+|||+.+..+.....++. +..+.++.+.+.+..++.|++
T Consensus       242 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  321 (406)
T PRK11551        242 WLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLF  321 (406)
T ss_pred             HHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            4566778889999999988888777778888899999999999999888766666654 446677888787888888888


Q ss_pred             hhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHH
Q 012965          138 TSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVI  214 (452)
Q Consensus       138 ~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~  214 (452)
                      .+...+...+ +..|.   ++|++..+..+.        ...+|..+++.+.+.+.++. .+|...+.......++..+.
T Consensus       322 ~~~~~~~~~~-~~~~~~p~~~~g~~~g~~~~--------~~~~g~~~g~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~  391 (406)
T PRK11551        322 VVGGQSVLYA-LAPLFYPTQVRGTGVGAAVA--------VGRLGSMAGPLLAGQLLALG-RSTVGVIGASIPVILVAALA  391 (406)
T ss_pred             HHhHHHHHHH-HHHHHcchhhhhhhhhHHHH--------hhhHHHHHHhhhHhhhhccC-CchHHHHHHHHHHHHHHHHH
Confidence            7776666544 55665   344554442222        23355566667777666532 23444455444444444333


Q ss_pred             H
Q 012965          215 I  215 (452)
Q Consensus       215 ~  215 (452)
                      .
T Consensus       392 ~  392 (406)
T PRK11551        392 A  392 (406)
T ss_pred             H
Confidence            3

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.04  E-value=8.6e-09  Score=101.56  Aligned_cols=267  Identities=15%  Similarity=0.155  Sum_probs=163.8

Q ss_pred             HHHHHHHHHHhhhhh----hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-
Q 012965           42 YLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-  116 (452)
Q Consensus        42 ~~~~~~~~~~~~~~~----~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-  116 (452)
                      ++.+..+..+.+.+.    ...+..+-+.++++.++.|.+.+..-+...+...+..+..-|.-|-|.+-.++++++++. 
T Consensus        98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsl  177 (735)
T KOG3626|consen   98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSL  177 (735)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHH
Confidence            344444444444443    333445667899999998877666555555665678899999888889999999998875 


Q ss_pred             HHhcC--------------------c-----------------------------c--HH-HHHHHHHHHHhHhhhhhhh
Q 012965          117 ITKHS--------------------P-----------------------------Q--YK-ILMIGRILGGIATSLLFSA  144 (452)
Q Consensus       117 l~~~~--------------------~-----------------------------~--~~-~l~~~r~l~G~~~~~~~~~  144 (452)
                      ++++-                    +                             +  ++ .++++.++.|+|....++.
T Consensus       178 l~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl  257 (735)
T KOG3626|consen  178 LFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL  257 (735)
T ss_pred             HHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC
Confidence            43321                    0                             0  22 6678899999999999999


Q ss_pred             hhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc---------cC--C--CcchhhHHHHHHHHHH
Q 012965          145 FESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS---------FS--L--GPVAPFDAAACFLAIG  211 (452)
Q Consensus       145 ~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~---------~~--~--~~~~~f~~~~~~~~~~  211 (452)
                      ..+ |+.|..+++.-.-.++..+. ...+|-++|.+++++...+-.+.         .+  |  .|..-|++.+.+.++.
T Consensus       258 Gis-YiDDnvk~~~SplYlgi~~~-~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~  335 (735)
T KOG3626|consen  258 GIS-YIDDNVKKKNSPLYLGILYS-MAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFS  335 (735)
T ss_pred             CCc-cccccccccCCcHHHHHHHH-HHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence            977 99998555444443333332 33334444444444433322222         01  1  2445566666666655


Q ss_pred             HHHHHhccccccCCCC-------------------cch---hHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhh
Q 012965          212 MVIILSSWTENYGDPS-------------------ESK---DLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFL  269 (452)
Q Consensus       212 ~~~~~~~~~~~~~~~~-------------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (452)
                      .+.++ ..|++.+++.                   +..   +..++..+..+.+++||.+....+...+-.....+ ..+
T Consensus       336 a~p~f-~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G-~~t  413 (735)
T KOG3626|consen  336 AVPLF-FFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITG-YIT  413 (735)
T ss_pred             HHHHH-hCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-HHH
Confidence            55544 3343222110                   001   12234445667788888887777666655555444 689


Q ss_pred             hccccccCCCCCchHHHH---HHHH-HHHHHHhHHHHHHhccCCCCc
Q 012965          270 WTPALSPNDEEIPHGFIF---ATFM-LASMLGSSLASRLMARSPPRV  312 (452)
Q Consensus       270 ~~p~~~~~~~~~~~~~~~---~~~~-i~~~~~~~~~g~l~dr~g~~~  312 (452)
                      |+|.|++.+++.+++..-   ...+ -+..+|.+++|++.+|+..+.
T Consensus       414 FlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~  460 (735)
T KOG3626|consen  414 FLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSA  460 (735)
T ss_pred             hhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccH
Confidence            999999999999775333   2333 346778889999999985444

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.03  E-value=1.1e-09  Score=88.02  Aligned_cols=126  Identities=24%  Similarity=0.385  Sum_probs=86.5

Q ss_pred             hhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccch
Q 012965           84 SSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFE  159 (452)
Q Consensus        84 ~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~  159 (452)
                      ...+.+++.|++.||+|||+.+..+.....++. .....++++.+.+.+++.|++.+...+.... ++.|.   ++|++.
T Consensus        10 ~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~   88 (141)
T TIGR00880        10 GQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAA-LIADIYPPEERGVA   88 (141)
T ss_pred             HHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHCChhhhhHH
Confidence            344677789999999999999999988888775 5577899999999999999999988877755 66666   334443


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHhccc
Q 012965          160 QQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWT  220 (452)
Q Consensus       160 ~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  220 (452)
                      .+.    ...    ...+|..+++.+.+.+.+..  +|+..+........+.........|
T Consensus        89 ~~~----~~~----~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  139 (141)
T TIGR00880        89 LGL----MSA----GIALGPLLGPPLGGVLAQFL--GWRAPFLFLAILALAAFILLAFLLP  139 (141)
T ss_pred             HHH----HHH----hHHHHHHHhHHhHHHHhccc--chHHHHHHHHHHHHHHHHHHhhcCC
Confidence            332    222    23355555556666655433  4566677766665555555443334

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.01  E-value=2.4e-08  Score=98.44  Aligned_cols=160  Identities=15%  Similarity=0.181  Sum_probs=92.2

Q ss_pred             hhhHHHHH-hhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHH-HH--H-HhcCccHHHHHHHH
Q 012965           57 GPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL-SC--I-TKHSPQYKILMIGR  131 (452)
Q Consensus        57 ~p~l~~i~-~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i-~~--l-~~~~~~~~~l~~~r  131 (452)
                      ..++|... +++|.+..+.+.......+...++.++.|+++||+|||+++..+.++..+ +.  + ...+++...+++++
T Consensus       270 ~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (490)
T PRK10642        270 LTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGL  349 (490)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            34555655 56788887766665555565667778899999999999998888765443 22  1 22355677888899


Q ss_pred             HHHHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHH
Q 012965          132 ILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIG  211 (452)
Q Consensus       132 ~l~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~  211 (452)
                      ++.|++.+........ ++.|.-+...+.......++    ++. ++..++|.+.+++.+..+ +|+.++....+..++.
T Consensus       350 ~~~g~~~~~~~g~~~~-~~~~~~p~~~Rg~~~g~~~~----~~~-~~g~~~p~i~g~l~~~~~-~~~~~~~~~~~~~~i~  422 (490)
T PRK10642        350 LMLAVILNCFTGVMAS-TLPAMFPTHIRYSALAAAFN----ISV-LVAGLTPTLAAWLVESTQ-NLMMPAYYLMVVAVIG  422 (490)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHCCCccchHHHHHHHH----HHH-HHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHH
Confidence            9998877665554433 55665333333221222222    222 223445555555554322 3455555444444444


Q ss_pred             HHHHHhccccccC
Q 012965          212 MVIILSSWTENYG  224 (452)
Q Consensus       212 ~~~~~~~~~~~~~  224 (452)
                      .+... ..||+++
T Consensus       423 ~~~~~-~~pes~~  434 (490)
T PRK10642        423 LITGV-TMKETAN  434 (490)
T ss_pred             HHHHH-HhccccC
Confidence            33333 4577654

>PRK10054 putative transporter; Provisional

Probab=99.00  E-value=1.1e-08  Score=97.91  Aligned_cols=130  Identities=10%  Similarity=0.093  Sum_probs=86.5

Q ss_pred             hHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHH
Q 012965          248 KIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSS  324 (452)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~  324 (452)
                      .++.+.....+...+ +.....+.|.++++..|.+.   |...+...+...+++++.|+++||+|||+  .+..+.....
T Consensus         8 ~~~~l~~~~~~~~~g-~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~--~~~~~~~~~~   84 (395)
T PRK10054          8 STSALLASSLLLTIG-RGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKR--YMLLAITAFA   84 (395)
T ss_pred             hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHH
Confidence            344444444444333 33356778888877667655   66777777888999999999999999987  3444444444


Q ss_pred             HHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          325 VSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      +......+..+.               +..++...+.+.+.+...+...++..|..|+++|++++|+.+..
T Consensus        85 ~~~~~~~~~~~~---------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  140 (395)
T PRK10054         85 SGFIAIPLVNNV---------------TLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTM  140 (395)
T ss_pred             HHHHHHHHHhHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Confidence            444443332222               23344455566666666788899999999999999998877654

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.99  E-value=9.5e-09  Score=100.50  Aligned_cols=160  Identities=14%  Similarity=0.113  Sum_probs=103.7

Q ss_pred             hcchhHHHHHHHHHhhhchhhhhhhhhccccccCC--CCCch---HHHHHHHHHHHHHHhHHHHHHhcc-CCCCchhHHH
Q 012965          244 ASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPND--EEIPH---GFIFATFMLASMLGSSLASRLMAR-SPPRVESYMQ  317 (452)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr-~g~~~~~~~~  317 (452)
                      +++|+.........+.....++....++|.|+++.  .|.+.   +...+...++..++.+++|+++|| +|||+.  +.
T Consensus         6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~--l~   83 (475)
T TIGR00924         6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKT--MV   83 (475)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHH--HH
Confidence            34555555444444454444444678888888654  66644   677788888999999999999999 899883  55


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCccc---ccchhhhhhh
Q 012965          318 IVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEA---RSTIMNFFRI  394 (452)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~---r~~~~g~~~~  394 (452)
                      .+..+..++..........               +...++..+.+++.+...|...++..|.+|+++   |+++.++.+.
T Consensus        84 ~~~~~~~~g~~~~~~~~~~---------------~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~  148 (475)
T TIGR00924        84 LGGIVLMLGHFMLAMSIYP---------------DLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYM  148 (475)
T ss_pred             HHHHHHHHHHHHHHhcccH---------------hHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHH
Confidence            5555555554443322111               245566777888888888999999999998764   7778777665


Q ss_pred             h------hhHHHHHHHhccccCCchHHHHHHHHH
Q 012965          395 P------LNIFVCVVLYNVDAFPITVMFGMCSIF  422 (452)
Q Consensus       395 ~------~~~~~~~~l~~~~~~~~~~~~~~~~~~  422 (452)
                      .      .++.+++.+.+.  .++...+..+++.
T Consensus       149 ~~niG~~ig~~l~g~l~~~--~g~~~~f~~~~~~  180 (475)
T TIGR00924       149 SINIGSFISPLLAGVIAEN--YGYHVGFNLAAVG  180 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHh--cChHHHHHHHHHH
Confidence            4      233444555544  3444555444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK12382 putative transporter; Provisional

Probab=98.98  E-value=4.2e-08  Score=93.95  Aligned_cols=147  Identities=22%  Similarity=0.340  Sum_probs=95.0

Q ss_pred             hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHH
Q 012965           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G  135 (452)
                      ..+.+...++.+.+.  .+...........++.++.|++.||+|+||.+..+..+.+++. +..+.++.+.+++.+++.|
T Consensus       236 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  313 (392)
T PRK12382        236 GTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTG  313 (392)
T ss_pred             HHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            344445556666654  3433333334445667789999999999999999888888775 5567788888888999999


Q ss_pred             hHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHH
Q 012965          136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM  212 (452)
Q Consensus       136 ~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~  212 (452)
                      ++.+...+.... .+.|.   ++|++..+.    .+..    ..+|..+++.+.+.+.++.  +|+..|...+.+.++..
T Consensus       314 ~~~~~~~~~~~~-~~~~~~~~~~~g~~~g~----~~~~----~~~g~~ig~~~~g~l~~~~--g~~~~~~~~~~~~~~~~  382 (392)
T PRK12382        314 AGCSLIFPALGV-EVVKRVPSQVRGTALGG----YAAF----QDIAYGVSGPLAGMLATSF--GYPSVFLAGAISAVLGI  382 (392)
T ss_pred             HHHHhHHHHHHH-HHHHhcCHHHHHHHHHH----HHHH----HHHHHHHHHHHHHHHHHHh--CchHHHHHHHHHHHHHH
Confidence            999887776544 54554   334443332    2222    3345555666666666544  45667777666666555


Q ss_pred             HHHH
Q 012965          213 VIIL  216 (452)
Q Consensus       213 ~~~~  216 (452)
                      ....
T Consensus       383 ~~~~  386 (392)
T PRK12382        383 IVTI  386 (392)
T ss_pred             HHHH
Confidence            5444

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.96  E-value=8.9e-08  Score=88.58  Aligned_cols=163  Identities=25%  Similarity=0.287  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHhhhhhhhhH-HHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH--HH
Q 012965           42 YLLVYSLMMAGDWLQGPYV-YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC--IT  118 (452)
Q Consensus        42 ~~~~~~~~~~~~~~~~p~l-~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~--l~  118 (452)
                      .+....+.+.+.+....|+ |.+.+..|.|.+.++++....-+.+.+++.+.|+++|| +.|+.+.....+.++..  +.
T Consensus       216 ~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~  294 (394)
T COG2814         216 GLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALT  294 (394)
T ss_pred             HHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444 34456789999999988877777778888999999999 99999998888887764  34


Q ss_pred             hcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc--ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCC
Q 012965          119 KHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLG  196 (452)
Q Consensus       119 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~  196 (452)
                      ...++.+..++.-++.|++.......... -+++.  +.++...+.    +....++|..+|.    .+++.+.++  ++
T Consensus       295 ~~~~~~~~~~~~~~~wg~a~~~~~~~~~~-~~a~~~p~~~~~a~sl----~~aa~nlgia~GA----~lGG~v~~~--~g  363 (394)
T COG2814         295 FTGASPALALALLFLWGFAFSPALQGLQT-RLARLAPDAADLAGSL----NVAAFNLGIALGA----ALGGLVLDA--LG  363 (394)
T ss_pred             HhcchHHHHHHHHHHHHHHhhhhhhHHHH-HhcccCCCchHHHHHH----HHHHHHHHHHHHH----HHHHHHHHh--hc
Confidence            55667777777777777776655444323 34442  344444443    3334444444444    445555544  56


Q ss_pred             cchhhHHHHHHHHHHHHHHH
Q 012965          197 PVAPFDAAACFLAIGMVIIL  216 (452)
Q Consensus       197 ~~~~f~~~~~~~~~~~~~~~  216 (452)
                      +....+..+++.+++..+..
T Consensus       364 ~~~~~~~~a~l~~~a~~~~~  383 (394)
T COG2814         364 YAATGWVGAALLLLALLLAL  383 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            66777887777777666654

>PRK09952 shikimate transporter; Provisional

Probab=98.96  E-value=5.5e-08  Score=94.43  Aligned_cols=152  Identities=16%  Similarity=0.079  Sum_probs=92.9

Q ss_pred             HhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HH--hc-C-ccHHHHHHHHHHHHhHh
Q 012965           64 YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT--KH-S-PQYKILMIGRILGGIAT  138 (452)
Q Consensus        64 ~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~--~~-~-~~~~~l~~~r~l~G~~~  138 (452)
                      .+++|.+..+...+.......+.++.++.|+++||+|||+++..+.++..++. ..  .. . ++.+.+++..++.+++.
T Consensus       278 ~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  357 (438)
T PRK09952        278 TQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAH  357 (438)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            46788887655444333444455666789999999999999988876655542 11  11 2 33445555667778887


Q ss_pred             hhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHhc
Q 012965          139 SLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSS  218 (452)
Q Consensus       139 ~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  218 (452)
                      +...+...+ ++.|.-+.+.+..    ..+....++..++..++|.+.+++.+..+.+|+.++...+...++..+... .
T Consensus       358 ~~~~~~~~~-~~~e~~p~~~r~t----g~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~-~  431 (438)
T PRK09952        358 DMVVCVQQP-MFTEMFGASYRYS----GAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTAL-L  431 (438)
T ss_pred             HHHHHHHHH-HHHHHCCcchhHH----HHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH-H
Confidence            777666544 7777633333222    233334455556777777888877765444567777666666555544443 3


Q ss_pred             ccc
Q 012965          219 WTE  221 (452)
Q Consensus       219 ~~~  221 (452)
                      .+|
T Consensus       432 ~~~  434 (438)
T PRK09952        432 MKD  434 (438)
T ss_pred             ccc
Confidence            444

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.95  E-value=2.7e-08  Score=96.17  Aligned_cols=159  Identities=12%  Similarity=0.125  Sum_probs=95.5

Q ss_pred             HHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccC-CCCchhHHHHHHHHHHH
Q 012965          250 ALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARS-PPRVESYMQIVFVVSSV  325 (452)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~  325 (452)
                      +.............|. ...++|.|+++..+.+.   +...........++.+++|+++||+ |||+.  +..+..+..+
T Consensus        12 ~~l~~~~~~e~fs~Yg-~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~--iliG~il~~l   88 (493)
T PRK15462         12 YYVVALQIWEYFSFYG-MRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMA--VMLGALLMAI   88 (493)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHH--HHHHHHHHHH
Confidence            3333333333444444 57889999887777665   4555666677788999999999999 98883  5555555554


Q ss_pred             HHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcc--cccchhhhhhhhhh------
Q 012965          326 SLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEE--ARSTIMNFFRIPLN------  397 (452)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~--~r~~~~g~~~~~~~------  397 (452)
                      +...+......  +            ....++..+..++.|...+...++..|.+|++  +|.++.++.....+      
T Consensus        89 g~lll~~~~~~--~------------~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~ia  154 (493)
T PRK15462         89 GHVVLGASEIH--P------------SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIA  154 (493)
T ss_pred             HHHHHHHhhcc--h------------hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHH
Confidence            44332211110  0            12334444555677776787889999999986  68888887776533      


Q ss_pred             HHHHHHHhccccCCchHHHHHHHHHHHHHH
Q 012965          398 IFVCVVLYNVDAFPITVMFGMCSIFLLVAS  427 (452)
Q Consensus       398 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  427 (452)
                      +.+.+++.+.  .++...+..+++..+++.
T Consensus       155 p~l~g~L~~~--~Gw~~~F~iaaigm~l~l  182 (493)
T PRK15462        155 PIACGYAQEE--YSWAMGFGLAAVGMIAGL  182 (493)
T ss_pred             HHHHHHHHhh--hChHHHHHHHHHHHHHHH
Confidence            2344444444  345555555544444333

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.94  E-value=9.7e-11  Score=114.78  Aligned_cols=257  Identities=12%  Similarity=0.097  Sum_probs=3.0

Q ss_pred             hhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhc----Cc-----
Q 012965           53 DWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH----SP-----  122 (452)
Q Consensus        53 ~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~----~~-----  122 (452)
                      .++....+..+.+.|+++.++.|.+.+..-+...+..++..++.+|..|-|.+-.+.++.++++ +.++    .+     
T Consensus        19 ~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~   98 (539)
T PF03137_consen   19 SGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYE   98 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccc
Confidence            3343555567889999999999999888888888888889999999888888888888888875 3231    00     


Q ss_pred             -----------------------------------------cHHHHHHHHHHHHhHhhhhhhhhhhhhhhhcccccchhh
Q 012965          123 -----------------------------------------QYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQ  161 (452)
Q Consensus       123 -----------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~~~r~~~~~  161 (452)
                                                               -+..++++.++.|+|....++...+ |+.|..+++...-
T Consensus        99 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~t-YiDDnv~~~~spl  177 (539)
T PF03137_consen   99 EASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGIT-YIDDNVSKKNSPL  177 (539)
T ss_dssp             -----------------------------------------------------SSS------------------------
T ss_pred             cccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceee-eeccccccccCcc
Confidence                                                     0237788999999999999999977 9999844333332


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--------------cCC--CcchhhHHHHHHHHHHHHHHH---hccccc
Q 012965          162 WLSITFSKAIFLGNGLVAILSGLFGNLLVDS--------------FSL--GPVAPFDAAACFLAIGMVIIL---SSWTEN  222 (452)
Q Consensus       162 ~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~--------------~~~--~~~~~f~~~~~~~~~~~~~~~---~~~~~~  222 (452)
                      ..+. ......+|.++|.++++.....-.+.              ..|  .|..-|.+.+.+.++..+.+.   +.+|++
T Consensus       178 YiGi-~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~  256 (539)
T PF03137_consen  178 YIGI-LYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGT  256 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             chhh-hhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence            2222 22233333333333333322221111              011  244555555555554443332   233333


Q ss_pred             cCCCC-------cch----h-------------HHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCC
Q 012965          223 YGDPS-------ESK----D-------------LLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPND  278 (452)
Q Consensus       223 ~~~~~-------~~~----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  278 (452)
                      ++.++       +.+    +             ..++..+..+.+++||.+....+..........+ ..++.|.|++.+
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G-~~tF~pKylE~Q  335 (539)
T PF03137_consen  257 SERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSG-FATFLPKYLESQ  335 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            10000       000    0             0111122345567777777776666655555444 588999999999


Q ss_pred             CCCchHHHH---HHHH-HHHHHHhHHHHHHhccCCCCc
Q 012965          279 EEIPHGFIF---ATFM-LASMLGSSLASRLMARSPPRV  312 (452)
Q Consensus       279 ~~~~~~~~~---~~~~-i~~~~~~~~~g~l~dr~g~~~  312 (452)
                      ++.+++...   .... .+.++|.+++|++.+|++-+.
T Consensus       336 F~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~  373 (539)
T PF03137_consen  336 FGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSA  373 (539)
T ss_dssp             --------------------------------------
T ss_pred             hCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcH
Confidence            988764332   2222 357788999999999985443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.94  E-value=3.7e-08  Score=95.58  Aligned_cols=110  Identities=15%  Similarity=0.194  Sum_probs=80.0

Q ss_pred             hhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCC
Q 012965          268 FLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKS  344 (452)
Q Consensus       268 ~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (452)
                      ..+.|.+.++ .+.+.   +...+...++..+++++.|++.||+|||+  .+..+..+.++...........        
T Consensus        43 ~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~--~~~~~~~~~~~~~~~~~~~~~~--------  111 (434)
T PRK11663         43 NAAMPEMLAD-LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARY--FMGIGLIATGIINILFGFSSSL--------  111 (434)
T ss_pred             HHhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCch--hHHHHHHHHHHHHHHHHHHhHH--------
Confidence            5566766654 55544   67777888899999999999999999987  3555555555554443332222        


Q ss_pred             CCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          345 GGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       345 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                             +...+..++.+++.+..++....++.|.+|+++|++++|+.+..
T Consensus       112 -------~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~  155 (434)
T PRK11663        112 -------WAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTA  155 (434)
T ss_pred             -------HHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence                   24455566778888888899999999999999999999887764

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.94  E-value=6.7e-08  Score=92.45  Aligned_cols=150  Identities=14%  Similarity=0.080  Sum_probs=87.5

Q ss_pred             hhhhhhhHHHHHhhcCCCcchhHHHHHHHHh-hhhhccccccccccccCcchHHHHHHHHHHHHH-HH-h-----cCccH
Q 012965           53 DWLQGPYVYYLYSTYGFGKGEIGQLFIAGFG-SSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT-K-----HSPQY  124 (452)
Q Consensus        53 ~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~-~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~-~-----~~~~~  124 (452)
                      ......+.+...+|.|++++++|.+...... ...++..+.|++.||+|+|+.+..+..+.++.. .. .     ..++.
T Consensus       224 ~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (390)
T TIGR02718       224 AVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGI  303 (390)
T ss_pred             HHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcH
Confidence            3333344555667789999999988766543 333455679999999999999988776653322 11 1     12344


Q ss_pred             HHHHHHHHHHHhHhhhhhhhhhhhhhhhc-c---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchh
Q 012965          125 KILMIGRILGGIATSLLFSAFESWLVAEH-N---KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAP  200 (452)
Q Consensus       125 ~~l~~~r~l~G~~~~~~~~~~~~~~i~e~-~---~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~  200 (452)
                      +.+.....+.++..+...+...+ ...+. .   .++...+.    .+...    .+|..+++.+++.+.+..  +++..
T Consensus       304 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~g~~~~~----~~~~~----~lg~~~g~~~~G~l~~~~--G~~~~  372 (390)
T TIGR02718       304 AVAWSCSAFGSLITGITSVAIYT-AFMRFAGDGDQAGTDVTA----VQSTR----DLGELIASSIAGYLTDRF--GYAGG  372 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCcccchHHHHHH----HHHHH----HHHHHHHHHHHHHHHHHH--ccHHH
Confidence            44455555666666666555544 33333 2   22333332    22222    355566666666666544  45667


Q ss_pred             hHHHHHHHHHHHH
Q 012965          201 FDAAACFLAIGMV  213 (452)
Q Consensus       201 f~~~~~~~~~~~~  213 (452)
                      |...+++.++...
T Consensus       373 f~~~~~~~l~a~~  385 (390)
T TIGR02718       373 FLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHH
Confidence            7776666555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.92  E-value=6.9e-08  Score=90.67  Aligned_cols=148  Identities=23%  Similarity=0.288  Sum_probs=108.5

Q ss_pred             hhhHHHHHhhc-CCCcchhHHHHHHHHhhhhhccccccccccccCcch-HHHHHHHHHHHHH-HHhcCccHHHHHHHHHH
Q 012965           57 GPYVYYLYSTY-GFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKR-ACVTYCLTYILSC-ITKHSPQYKILMIGRIL  133 (452)
Q Consensus        57 ~p~l~~i~~~~-g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~-~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l  133 (452)
                      ....+...++. |.++.+.+.......+...++.++.|++.||+|||+ .+..+..+..++. .....++.+...+..++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  274 (352)
T cd06174         195 LTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLL  274 (352)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            45556666554 899999998888888888888899999999999999 9999988888876 56778889999999999


Q ss_pred             HHhHhhhhhhhhhhhhhhhcc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHH
Q 012965          134 GGIATSLLFSAFESWLVAEHN---KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAI  210 (452)
Q Consensus       134 ~G~~~~~~~~~~~~~~i~e~~---~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~  210 (452)
                      .|++.+...+.... ++.|..   +|++..+    ..+.    ...++..+++.+.+.+.+.  .+|+..+.+.+++.++
T Consensus       275 ~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~----~~~~~~~i~~~i~g~l~~~--~~~~~~~~~~~~~~~i  343 (352)
T cd06174         275 LGFGLGFAFPALLT-LASELAPPEARGTASG----LFNT----FGSLGGALGPLLAGLLLDT--GGYGGVFLILAALALL  343 (352)
T ss_pred             HHHHHhccchhHHH-HHHhhcCHHHHHHHHH----HHHH----HHHHHHHHHHHHHHHHhcc--cCcchHHHHHHHHHHH
Confidence            99999999888756 777663   3333333    2222    2345556666666666643  4566777777777666


Q ss_pred             HHHHH
Q 012965          211 GMVII  215 (452)
Q Consensus       211 ~~~~~  215 (452)
                      ..+..
T Consensus       344 ~~i~~  348 (352)
T cd06174         344 AALLL  348 (352)
T ss_pred             HHHHh
Confidence            55443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.91  E-value=2e-07  Score=88.97  Aligned_cols=143  Identities=13%  Similarity=0.050  Sum_probs=90.3

Q ss_pred             HHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HH-hcCccHHHHHHHHHHHHhHhh
Q 012965           62 YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT-KHSPQYKILMIGRILGGIATS  139 (452)
Q Consensus        62 ~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~-~~~~~~~~l~~~r~l~G~~~~  139 (452)
                      .+.+.+|.++.+.+...+...+...++.++.|++.||+|+|+.+..+..+.+++. +. ...++.+...+..++.+.+..
T Consensus       225 ~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~  304 (382)
T PRK10091        225 YMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLF  304 (382)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            4445689999999988888777788888999999999999999998888877765 33 345566666666677777665


Q ss_pred             hhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHH
Q 012965          140 LLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM  212 (452)
Q Consensus       140 ~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~  212 (452)
                      ...+........+. .+++..+..  ..    .....+|..++|.+++.+.+. .++|+..+...+++.++..
T Consensus       305 ~~~~~~~~~~~~~~-~~~~~~~~~--~~----~~~~~~g~~~Gp~~~G~l~~~-~~~~~~~~~~~~~~~~~~~  369 (382)
T PRK10091        305 ALSAPLQILLLQNA-KGGELLGAA--GG----QIAFNLGSAIGAYCGGMMLTL-GLAYNYVALPAALLSFAAM  369 (382)
T ss_pred             hhhHHHHHHHHHhC-CcchHHHHH--HH----HHHHHHHHHHHHHHhHHHHHc-ccCcchHHHHHHHHHHHHH
Confidence            55444333233332 222222211  01    123446667777777777763 2345566666555444433

>PRK10504 putative transporter; Provisional

Probab=98.90  E-value=8.5e-08  Score=94.23  Aligned_cols=121  Identities=22%  Similarity=0.242  Sum_probs=78.0

Q ss_pred             HHHHHh-hcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhc---CccHHHHHHHHHHH
Q 012965           60 VYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH---SPQYKILMIGRILG  134 (452)
Q Consensus        60 l~~i~~-~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~---~~~~~~l~~~r~l~  134 (452)
                      .|...+ .+|.++.+.+.......+...+..++.|++.||+|||+++..+..+.+++. +..+   .++.+.+.+..++.
T Consensus       284 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (471)
T PRK10504        284 TPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQ  363 (471)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence            344444 588898888877766666566666889999999999999998888777754 3333   23444455567788


Q ss_pred             HhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012965          135 GIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLF  185 (452)
Q Consensus       135 G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l  185 (452)
                      |++.+...+.... +..+.   +.++...+..    +....+|..+|+.+++.+
T Consensus       364 g~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~----~~~~~~g~~ig~~i~g~l  412 (471)
T PRK10504        364 GMVNSTRFSSMNT-LTLKDLPDNLASSGNSLL----SMIMQLSMSIGVTIAGLL  412 (471)
T ss_pred             HHHHHHHHHHHHH-HHHHcCCHHhccchHHHH----HHHHHHHHHHHHHHHHHH
Confidence            8888877776644 44443   4455554433    333444444555444433

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.90  E-value=7.6e-08  Score=92.30  Aligned_cols=138  Identities=12%  Similarity=0.111  Sum_probs=93.2

Q ss_pred             CCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHHhHhhhhhhhhh
Q 012965           68 GFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFE  146 (452)
Q Consensus        68 g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~  146 (452)
                      +.+..+.|...+...+...+..+..|++.||+|||+.+..+..+.+++. +...++|.+.+++.+++.|++.........
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  329 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF  329 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555667777777766666777789999999999999999988888875 447788999899999999988765544332


Q ss_pred             hhhhhhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHH
Q 012965          147 SWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMV  213 (452)
Q Consensus       147 ~~~i~e~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~  213 (452)
                      . +..+. ++|.....     .+.+......+|..+++.+++++.+..  +++..|.+.+++.++...
T Consensus       330 ~-~~~~~~~~~~~at~-----~~~~~~~~~~lg~~~~~~l~G~l~~~~--G~~~~f~~~~~~~~i~~~  389 (396)
T TIGR00882       330 K-YITSQFDVRLSATI-----YLIGFQFAKQLAMIFLSTLAGNMYDSI--GFQGAYLVLGCIVLLFTL  389 (396)
T ss_pred             H-HHHHhCCcceEEEe-----ehHHHHHHHHHHHHHHHHhHHHHHHhc--ccHHHHHHHHHHHHHHHH
Confidence            3 44433 33332211     111222345567777777888877644  567778777666655443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.89  E-value=3.3e-08  Score=94.75  Aligned_cols=136  Identities=8%  Similarity=0.057  Sum_probs=91.3

Q ss_pred             hhhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcC
Q 012965          267 VFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVK  343 (452)
Q Consensus       267 ~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (452)
                      ...+.|.++++..+.+.   |...+...+...+.+++.|+++||+|||+  .+..+.....+.........+.       
T Consensus        29 ~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~--~l~~~~~~~~~~~~~~~~~~~~-------   99 (400)
T PRK11646         29 VFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKP--MIVTGMLMRAAGFATMAIAHEP-------   99 (400)
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchH--HHHHHHHHHHHHHHHHHHhccH-------
Confidence            45667777766666655   56666667777888899999999999887  3555555555544443322211       


Q ss_pred             CCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh------hhHHHHHHHhccccCCchHHHH
Q 012965          344 SGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNVDAFPITVMFG  417 (452)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~~~~~~~  417 (452)
                              +...+...+.+++.+...|...+++.|.+|+++|++++|+.+..      .++.+++.+. .  +++...+.
T Consensus       100 --------~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~--~g~~~~f~  168 (400)
T PRK11646        100 --------WLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-Q--YDFRLVCA  168 (400)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--hhHHHHHH
Confidence                    35566677778888877888999999999999999999887664      3445555555 2  34444444


Q ss_pred             HHHHH
Q 012965          418 MCSIF  422 (452)
Q Consensus       418 ~~~~~  422 (452)
                      ..++.
T Consensus       169 ~~~~~  173 (400)
T PRK11646        169 TGAVL  173 (400)
T ss_pred             HHHHH
Confidence            44433

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.89  E-value=3.5e-08  Score=94.13  Aligned_cols=108  Identities=15%  Similarity=0.071  Sum_probs=77.7

Q ss_pred             hccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCC
Q 012965          270 WTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGG  346 (452)
Q Consensus       270 ~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (452)
                      ..|.+. ++.+.+.   +...+...++..++.++.|++.||+|||+  .+..+..+..+...........          
T Consensus        27 ~~p~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~--~~~~~~~~~~~~~~~~~~~~~~----------   93 (385)
T TIGR00710        27 AFPEIA-ADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRP--VLLLGLFIFALSSLGLALSNNI----------   93 (385)
T ss_pred             cHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChH--HHHHHHHHHHHHHHHHHHHccH----------
Confidence            344443 3355544   67777788899999999999999999987  3555544444444443332222          


Q ss_pred             cccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          347 ISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       347 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                           +...+..++.+++.+...+...++..|.+|+++|++.+|..+..
T Consensus        94 -----~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (385)
T TIGR00710        94 -----ETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPV  137 (385)
T ss_pred             -----HHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence                 35566778888888888899999999999999999998887664

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.87  E-value=2.1e-06  Score=81.34  Aligned_cols=311  Identities=15%  Similarity=0.065  Sum_probs=159.4

Q ss_pred             HHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhccccc
Q 012965           78 FIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRG  157 (452)
Q Consensus        78 ~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~~~r~  157 (452)
                      ..+.|..-.+.+.+.+.+.|+.|.|+.+.++...+..--+.-+-+|-+.++.+-.+.|+|.+..+..-.. +++|+..|.
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~GqG~-ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQGG-YLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheecccce-ehhhcCChh
Confidence            4455555556777899999999999999999998887655556677888999999999999998877655 888885555


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc---CCCcc-h----------hhHHHHHHHHHHHHHHH--hcccc
Q 012965          158 FEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSF---SLGPV-A----------PFDAAACFLAIGMVIIL--SSWTE  221 (452)
Q Consensus       158 ~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~---~~~~~-~----------~f~~~~~~~~~~~~~~~--~~~~~  221 (452)
                      ..-+..+..++.+.. +..+|+++--.+... .+..   .-+.+ .          ...+..++..+..+...  .+.|.
T Consensus       135 tie~Nisi~Wai~~~-~li~Ggi~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~  212 (461)
T KOG3098|consen  135 TIERNISIFWAIGQS-SLIIGGIILFIYFQF-SSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPS  212 (461)
T ss_pred             hHHHHHHHHHHHHHH-HHHhhhHhheeeeEe-cccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCc
Confidence            555444444443222 222222221111110 0000   00110 0          01111111111111111  12222


Q ss_pred             ccCCC-Ccch-hHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhcccccc--CCCCCch----HHHHHHHHHH
Q 012965          222 NYGDP-SESK-DLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSP--NDEEIPH----GFIFATFMLA  293 (452)
Q Consensus       222 ~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~----~~~~~~~~i~  293 (452)
                      +.... .+.. ....+..+..-+..++++.+.+..... ..+....+.....|.-..  ...+.+.    +......+++
T Consensus       213 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~ml~L~~~f~-~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g  291 (461)
T KOG3098|consen  213 KDVVNCKSSSETSFSELLKLTFKLLKTPKMLLLFPFFF-YTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLG  291 (461)
T ss_pred             cchhhhhhhccccHHHHHHHHHHHhcCHhHHHHHHHHH-HHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHH
Confidence            11110 1111 011111222334456666655543332 222223333444454332  1222222    3333444566


Q ss_pred             HHHHhHHHHHHhcc---CCCCchhHHHHHHHHHHHHHHHHHHHhhhcC---CCCcCCCCcccchhhHHHHHHHHHHHhhc
Q 012965          294 SMLGSSLASRLMAR---SPPRVESYMQIVFVVSSVSLLLPIVTSFLVA---PSNVKSGGISFSGSLQLLGFCTFEACVGI  367 (452)
Q Consensus       294 ~~~~~~~~g~l~dr---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  367 (452)
                      .+.+....+.+.||   +|+++.  +..+..+....+.+.........   ++++++..+........+...+.|++...
T Consensus       292 ~v~~g~~~~~l~~rir~fg~~~~--~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~  369 (461)
T KOG3098|consen  292 EVIGGLDFSILSKRIRGFGRKPT--VLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDAC  369 (461)
T ss_pred             HHHHHHHHHHHhhhhhhcccCcc--hhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHH
Confidence            77777777777765   465652  44444443333333322222211   11111112222234667778889999998


Q ss_pred             hhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          368 FWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       368 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      .+...+..+.+.+|+ .|..+.++..+-
T Consensus       370 ~~t~~~~ii~~~~~~-~~~~~fsi~kfy  396 (461)
T KOG3098|consen  370 FNTQRYVIIALLYPD-DRAQAFSLFKFY  396 (461)
T ss_pred             HHHHHHHHHHHHhcC-chHHHHHHHHHH
Confidence            889999999999954 577777666653

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.87  E-value=5e-08  Score=95.54  Aligned_cols=161  Identities=12%  Similarity=0.133  Sum_probs=99.6

Q ss_pred             cchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCchH---HHHHHHHHHHHHHhHHHHHHhcc-CCCCchhHHHHHH
Q 012965          245 SDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHG---FIFATFMLASMLGSSLASRLMAR-SPPRVESYMQIVF  320 (452)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~g~l~dr-~g~~~~~~~~~~~  320 (452)
                      ++|+-....+...+.....|+....+++.|+++..|.+..   .....+........+++|+++|| +|||+.  +..+.
T Consensus        11 ~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~--~~~g~   88 (489)
T PRK10207         11 QQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRT--IVLGA   88 (489)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHH--HHHHH
Confidence            3444444443333444333444577788888777776653   34444555566667799999999 999983  55666


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCccc--ccchhhhhhhhh--
Q 012965          321 VVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEA--RSTIMNFFRIPL--  396 (452)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~--r~~~~g~~~~~~--  396 (452)
                      .+..++..........   +           ....++..+.+++.+...|...+++.|.+|+++  |+++++...+..  
T Consensus        89 ~~~~~g~~~~~~~~~~---~-----------~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~ni  154 (489)
T PRK10207         89 IVLAIGYFMTGMSLLK---P-----------DLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINI  154 (489)
T ss_pred             HHHHHHHHHHHHhccc---h-----------hHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHH
Confidence            5555555444332211   0           134466777889999888999999999998874  466666666543  


Q ss_pred             ----hHHHHHHHhccccCCchHHHHHHHHHH
Q 012965          397 ----NIFVCVVLYNVDAFPITVMFGMCSIFL  423 (452)
Q Consensus       397 ----~~~~~~~l~~~~~~~~~~~~~~~~~~~  423 (452)
                          ++.+++++.+..  ++...|.++.+..
T Consensus       155 g~~~g~~l~g~l~~~~--gw~~~F~i~~i~~  183 (489)
T PRK10207        155 GSLISLSLAPVIADKF--GYSVTYNLCGAGL  183 (489)
T ss_pred             HHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence                334556666554  4455555544333

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.86  E-value=3e-08  Score=93.30  Aligned_cols=111  Identities=22%  Similarity=0.272  Sum_probs=80.6

Q ss_pred             hhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCC
Q 012965          268 FLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKS  344 (452)
Q Consensus       268 ~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (452)
                      ....|.+..+.++.+.   +...+...++..++.++.|+++||+|||+  .+..+..+..+......+..+.        
T Consensus        16 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~--~l~~~~~~~~~~~~~~~~~~~~--------   85 (352)
T PF07690_consen   16 SPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRR--VLIIGLLLFALGSLLLAFASNF--------   85 (352)
T ss_dssp             HHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHH--HHHHHHHHHHHHHHHHHHHCCH--------
T ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCee--eEeehhhhhhhHHHHhhhhhhH--------
Confidence            3445534444455433   77788888999999999999999999887  3555555555553333322222        


Q ss_pred             CCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          345 GGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       345 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                             +..++..++.|++.+...+....++.|.+|+++|++.+|..+..
T Consensus        86 -------~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  129 (352)
T PF07690_consen   86 -------WLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAG  129 (352)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHH
T ss_pred             -------HHHhhhccccccccccccccccccccccchhhhhhhccccccch
Confidence                   36677888999999999999999999999999999999887764

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.86  E-value=3.2e-08  Score=94.55  Aligned_cols=130  Identities=13%  Similarity=0.164  Sum_probs=87.9

Q ss_pred             hhhHHHHH-hhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHH-HH--HHhc--CccHHHHHHH
Q 012965           57 GPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL-SC--ITKH--SPQYKILMIG  130 (452)
Q Consensus        57 ~p~l~~i~-~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i-~~--l~~~--~~~~~~l~~~  130 (452)
                      ..++|... +++|.+..+.+.......+...+..++.|+++||+|||+.+.....+..+ +.  +..+  .++.+.+...
T Consensus       239 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (394)
T TIGR00883       239 TTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFL  318 (394)
T ss_pred             HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence            45555665 67899998888887777777778888999999999999988765554433 31  2222  3567777788


Q ss_pred             HHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccC
Q 012965          131 RILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS  194 (452)
Q Consensus       131 r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~  194 (452)
                      .++.|++.+...+...+ ++.|.   ++|++..+.       ....+..+|..++|.+++.+.++.+
T Consensus       319 ~~~~g~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~-------~~~~~~~~g~~~~p~~~g~l~~~~g  377 (394)
T TIGR00883       319 VLGLALIGGMYTGPMGS-FLPELFPTEVRYTGASL-------AYNLAGAIFGGFAPYIAAALVAMTG  377 (394)
T ss_pred             HHHHHHHHHHHhhhHHH-HHHHhCCccceeeEeee-------hhHhHHHHHhhHHHHHHHHHHHHcC
Confidence            88999988888777755 77776   334443332       1223344566666777777776554

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.86  E-value=7.3e-08  Score=92.21  Aligned_cols=135  Identities=15%  Similarity=0.225  Sum_probs=91.1

Q ss_pred             hccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCC
Q 012965          270 WTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGG  346 (452)
Q Consensus       270 ~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (452)
                      ..|.+.+ ..+.+.   +...+...++..+++++.|++.||+|||+  .+..+..+.++.........+.          
T Consensus        42 ~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~--~~~~~~~~~~~~~~~~~~~~~~----------  108 (394)
T PRK10213         42 LLTPMAQ-DLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRY--VVILFAVLLTLSCLLVSFANSF----------  108 (394)
T ss_pred             hHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHH--HHHHHHHHHHHHHHHHHHHChH----------
Confidence            4555444 345544   56667778889999999999999999988  3555555555544443332222          


Q ss_pred             cccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh------hhHHHHHHHhccccCCchHHHHHHH
Q 012965          347 ISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNVDAFPITVMFGMCS  420 (452)
Q Consensus       347 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~  420 (452)
                           +..++.-.+.|++.+...|...+++.|.+|+++|+++.+.....      .++.+++.+.+.  .++...+...+
T Consensus       109 -----~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~--~gw~~~f~~~~  181 (394)
T PRK10213        109 -----SLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL--IGWRNVFNAAA  181 (394)
T ss_pred             -----HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCHHHHHHHHH
Confidence                 46677778889999988899999999999999999998876653      233445555554  34444444444


Q ss_pred             HHHH
Q 012965          421 IFLL  424 (452)
Q Consensus       421 ~~~~  424 (452)
                      +..+
T Consensus       182 ~l~~  185 (394)
T PRK10213        182 VMGV  185 (394)
T ss_pred             HHHH
Confidence            3333

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.85  E-value=2.6e-08  Score=95.71  Aligned_cols=110  Identities=11%  Similarity=0.042  Sum_probs=79.3

Q ss_pred             hhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCC
Q 012965          268 FLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKS  344 (452)
Q Consensus       268 ~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (452)
                      ....|.+. +.++.+.   +...+...++..++.++.|+++||+|||+.  +..+..+..+......+....        
T Consensus        32 ~~~~~~l~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~--~~~~~~~~~~~~~~~~~~~~~--------  100 (405)
T TIGR00891        32 ALVLAEVA-GEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLP--MVTSIVLFSAGTLACGFAPGY--------  100 (405)
T ss_pred             HHHHHHHH-HHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH--HHHHHHHHHHHHHHHHHhccH--------
Confidence            34445443 3345443   677778889999999999999999999983  444544444444443332222        


Q ss_pred             CCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          345 GGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       345 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                             +..++..++.|++.+...+...+++.|.+|+++|+++.++.+..
T Consensus       101 -------~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  144 (405)
T TIGR00891       101 -------ITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISG  144 (405)
T ss_pred             -------HHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHH
Confidence                   35667788889999988899999999999999999999887764

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.85  E-value=8.7e-08  Score=92.25  Aligned_cols=110  Identities=14%  Similarity=0.095  Sum_probs=81.0

Q ss_pred             hhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCC
Q 012965          268 FLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKS  344 (452)
Q Consensus       268 ~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (452)
                      ....| .++++++.+.   +...+...++..+++++.|++.||+|||+  .+..+..+.++......+..+.        
T Consensus        28 ~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~--~~~~~~~~~~~~~~~~~~~~~~--------   96 (412)
T TIGR02332        28 GFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARR--WIAGIMVLWGIASTATMFATGP--------   96 (412)
T ss_pred             HHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHH--HHHHHHHHHHHHHHHHHHhcCH--------
Confidence            34445 4455566654   66777888899999999999999999998  3555555555544444332222        


Q ss_pred             CCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          345 GGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       345 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                             +...+.-++.|++.+...|....++.|.+|+++|++++|+.+..
T Consensus        97 -------~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~  140 (412)
T TIGR02332        97 -------ESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIA  140 (412)
T ss_pred             -------HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence                   35667778889999988898889999999999999999888764

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.84  E-value=1.7e-07  Score=85.97  Aligned_cols=111  Identities=19%  Similarity=0.272  Sum_probs=88.9

Q ss_pred             hhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCC
Q 012965          268 FLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKS  344 (452)
Q Consensus       268 ~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (452)
                      ..-.|...++. +.+.   |.+.+...+..-++..+.|.++||.+.|.  .+..+..+.++..++..+....        
T Consensus        49 ~~a~p~l~e~~-~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~--fm~~gLilsai~nil~Gfs~s~--------  117 (448)
T COG2271          49 NLAMPALIEDG-GLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRY--FMAFGLILSAIVNILFGFSPSL--------  117 (448)
T ss_pred             hhccHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCce--eehHHHHHHHHHHHHHhhhhHH--------
Confidence            33455555543 3433   78888889999999999999999999887  3666777777777776665544        


Q ss_pred             CCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhhh
Q 012965          345 GGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPL  396 (452)
Q Consensus       345 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~  396 (452)
                             +...+...+.|...|..+|.....+...+|+++||+..|+-|.+-
T Consensus       118 -------~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~sh  162 (448)
T COG2271         118 -------FLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSH  162 (448)
T ss_pred             -------HHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhh
Confidence                   477788889999999999999999999999999999999988863

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.84  E-value=7.6e-08  Score=94.35  Aligned_cols=151  Identities=11%  Similarity=-0.009  Sum_probs=91.0

Q ss_pred             hHHH-HHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-H--HhcCccHHHHHHHHHHH
Q 012965           59 YVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-I--TKHSPQYKILMIGRILG  134 (452)
Q Consensus        59 ~l~~-i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l--~~~~~~~~~l~~~r~l~  134 (452)
                      .+|. +.+++|+|..+.+.......+.+.++.++.|+++||+|||+.+.....+..++. +  ....++.+...+.+++.
T Consensus       280 ~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (467)
T PRK09556        280 WSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFAL  359 (467)
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3443 446799999998888777777777888999999999999988776554444332 2  23456676777888888


Q ss_pred             HhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc----------cCCCcchhhHHH
Q 012965          135 GIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS----------FSLGPVAPFDAA  204 (452)
Q Consensus       135 G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~----------~~~~~~~~f~~~  204 (452)
                      |+........... ...|.-+++.+..    ..+.....++..|..++|.+.+.+.+.          ...+|+..|.+.
T Consensus       360 G~~~~~~~~~~~~-~~~~~~p~~~~g~----a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~  434 (467)
T PRK09556        360 GFLVFGPQLLIGV-AAVGFVPKKAIGV----ANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAAL  434 (467)
T ss_pred             HHHHhhHHHHHHH-HHHhhcchhhHHH----HHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHH
Confidence            8654332222112 4445533322222    222233334434656777777777761          023567777766


Q ss_pred             HHHHHHHHHH
Q 012965          205 ACFLAIGMVI  214 (452)
Q Consensus       205 ~~~~~~~~~~  214 (452)
                      .+..+++.+.
T Consensus       435 ~~~~~~~~~~  444 (467)
T PRK09556        435 DIAAIGCICL  444 (467)
T ss_pred             HHHHHHHHHH
Confidence            5555554433

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.83  E-value=2.3e-07  Score=91.28  Aligned_cols=147  Identities=15%  Similarity=0.203  Sum_probs=86.2

Q ss_pred             HHHhhcCCCcchhHHHH-HHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH----HHhcC-ccHHHHHHHHHHHH
Q 012965           62 YLYSTYGFGKGEIGQLF-IAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC----ITKHS-PQYKILMIGRILGG  135 (452)
Q Consensus        62 ~i~~~~g~s~~~~g~~~-~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~----l~~~~-~~~~~l~~~r~l~G  135 (452)
                      .+.+++|.|..+.+... ....+...++.++.|+++||+|+|+.+..+.++.+++.    ..+.. ++.+.+...-++..
T Consensus       248 ~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~  327 (491)
T PRK11010        248 FLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFEN  327 (491)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            34467899999999876 45556677777889999999999998877666554432    12333 45555555556644


Q ss_pred             hHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHH
Q 012965          136 IATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVII  215 (452)
Q Consensus       136 ~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~  215 (452)
                      +..+...+...+ +..+..++....... ...+.    ...+|..+++.+.+.+.+..  +|+..|.+.+++.+...+..
T Consensus       328 ~~~g~~~~~~~a-~~~~l~~~~~~~t~~-gl~~s----~~~lg~~~~~~~~G~l~~~~--G~~~~f~~~~~~~l~~l~~~  399 (491)
T PRK11010        328 LCGGMGTAAFVA-LLMTLCNKSFSATQF-ALLSA----LSAVGRVYVGPVAGWFVEAH--GWPTFYLFSVAAAVPGLLLL  399 (491)
T ss_pred             HHHHHHHHHHHH-HHHHHcCCCCcHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHH
Confidence            444444443333 444442222222211 12221    23455556666777777644  56677777666666655444


Q ss_pred             H
Q 012965          216 L  216 (452)
Q Consensus       216 ~  216 (452)
                      .
T Consensus       400 ~  400 (491)
T PRK11010        400 L  400 (491)
T ss_pred             H
Confidence            3

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.83  E-value=7.4e-08  Score=97.79  Aligned_cols=95  Identities=13%  Similarity=0.151  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHH
Q 012965          284 GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEA  363 (452)
Q Consensus       284 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  363 (452)
                      +.+.+...++.+++.++.|+++||+|||+.  +..+..+.+++.++..+....               +.++++-++.|+
T Consensus       205 g~l~s~~~lG~iiG~li~G~LsDR~GRR~~--lii~lil~~i~~ll~afa~s~---------------~~llv~R~l~G~  267 (742)
T TIGR01299       205 GMLGLIVYLGMMVGAFFWGGLADKLGRKQC--LLICLSVNGFFAFFSSFVQGY---------------GFFLFCRLLSGF  267 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHHH--HHHHHHHHHHHHHHHHHHhhH---------------HHHHHHHHHHHH
Confidence            567777889999999999999999999983  444444444444443332222               356777888999


Q ss_pred             HhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          364 CVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       364 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      +.+...|...+++.|.+|++.|++.++..+..
T Consensus       268 g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~  299 (742)
T TIGR01299       268 GIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMF  299 (742)
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999998876653

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.83  E-value=8.9e-08  Score=93.14  Aligned_cols=83  Identities=17%  Similarity=0.155  Sum_probs=61.8

Q ss_pred             CcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcC-ccHHHHHHHHHHHHhHhhhhhhhhhh
Q 012965           70 GKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS-PQYKILMIGRILGGIATSLLFSAFES  147 (452)
Q Consensus        70 s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~  147 (452)
                      ++.+.+.+.....+...++.+++++++||+|||+++..+..+.+++. ...+. ++.+.+.+..++.|++.+...+...+
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  334 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA  334 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666666667677888889999999999999999988877765 33333 46677778888899998888777655


Q ss_pred             hhhhhc
Q 012965          148 WLVAEH  153 (452)
Q Consensus       148 ~~i~e~  153 (452)
                       +++|.
T Consensus       335 -~~~~~  339 (437)
T TIGR00792       335 -LVADT  339 (437)
T ss_pred             -HHhhh
Confidence             55543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.83  E-value=3.9e-07  Score=86.58  Aligned_cols=165  Identities=16%  Similarity=0.222  Sum_probs=106.2

Q ss_pred             hhhhhhhhHHHHHhhcC-CCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcC-ccHHHHH
Q 012965           52 GDWLQGPYVYYLYSTYG-FGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS-PQYKILM  128 (452)
Q Consensus        52 ~~~~~~p~l~~i~~~~g-~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~-~~~~~l~  128 (452)
                      .......+.+...+|.| .+....|.+.+.+.+.-...-...+++..|+|.|+++.++.+.+++=. +.+.. ++.+...
T Consensus       222 ~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~  301 (400)
T PF03825_consen  222 SHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIV  301 (400)
T ss_pred             HHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence            33333344444557777 666777766565555444444468999999999999999999999854 55554 5554433


Q ss_pred             ----HHHHHHHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCC----Ccchh
Q 012965          129 ----IGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSL----GPVAP  200 (452)
Q Consensus       129 ----~~r~l~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~----~~~~~  200 (452)
                          +...+.|+..+..+.+... ++.+..+++.+.+    .++.......++|..++..+++++.++.+-    +|...
T Consensus       302 ~~~~l~q~lhG~tf~~~~~a~~~-yi~~~~p~~~~at----~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~  376 (400)
T PF03825_consen  302 ALQLLGQLLHGLTFGLFHAASVR-YIDRIAPPELRAT----AQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAV  376 (400)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHH-HHHHhCCccchHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence                3355799999999988866 8888755555544    233344455667778888888888776543    34445


Q ss_pred             hHHHHHHHHHHHHHHHhcccc
Q 012965          201 FDAAACFLAIGMVIILSSWTE  221 (452)
Q Consensus       201 f~~~~~~~~~~~~~~~~~~~~  221 (452)
                      +.+.+++.++..++.....+|
T Consensus       377 ~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  377 FLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             HHHHHHHHHHHHHHHHhhccC
Confidence            555555555544444434443

>PRK15075 citrate-proton symporter; Provisional

Probab=98.83  E-value=2.2e-07  Score=90.23  Aligned_cols=134  Identities=13%  Similarity=0.107  Sum_probs=80.9

Q ss_pred             hhhHHHHHh-hcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHH-HH-H---HhcCccHHHHHHH
Q 012965           57 GPYVYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL-SC-I---TKHSPQYKILMIG  130 (452)
Q Consensus        57 ~p~l~~i~~-~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i-~~-l---~~~~~~~~~l~~~  130 (452)
                      ..+.|...+ .+|.+..+.+.......+.+.++.++.|+++||+|||+++..+..+..+ .. .   ....+++......
T Consensus       258 ~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (434)
T PRK15075        258 TVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAV  337 (434)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence            444566655 4799988888776666666777788899999999999998876544432 21 1   1123444444455


Q ss_pred             HHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcc
Q 012965          131 RILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPV  198 (452)
Q Consensus       131 r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~  198 (452)
                      .++.|++.+...+...+ ++.|.   +.|+...+       .....+..++..++|.+.+.+.++.+++|.
T Consensus       338 ~~~~~~~~g~~~~~~~~-~~~e~~p~~~rg~~~g-------~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~  400 (434)
T PRK15075        338 ELWLSFLYGSYNGAMVV-ALTEVMPAEVRTAGFS-------LAYSLATAIFGGFTPAISTWLIHVTGDKAA  400 (434)
T ss_pred             HHHHHHHHHHHHhhHHH-HHHHHCCCCccchhee-------HHHHHHHHHHhhhHHHHHHHHHHhcCCchH
Confidence            55666666665554434 56665   33444322       222334444445566777777766665443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.83  E-value=1.4e-07  Score=86.53  Aligned_cols=200  Identities=16%  Similarity=0.204  Sum_probs=113.3

Q ss_pred             hhHHHHHHHHHHHHHhhccccccCCC-CCCc-------cchhhHHHHHHHHHHHHhhhhh-hhhHHHHH-hhcCCCcchh
Q 012965            5 FYLVFGALGAVVAALELSKTNKDRIN-TSSA-------FNSFKNNYLLVYSLMMAGDWLQ-GPYVYYLY-STYGFGKGEI   74 (452)
Q Consensus         5 ~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~p~l~~i~-~~~g~s~~~~   74 (452)
                      .|++...+..++..+.+...++.+.. ++..       .+..+.+.+.......++.... +..+|... ++|+.++.+.
T Consensus       177 i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~A  256 (417)
T COG2223         177 IYVVALAIAAVLAWLGMNDVPEHRASVKPQLPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTA  256 (417)
T ss_pred             HHHHHHHHHHHHHHHHhCCChhhhccccccchhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhH
Confidence            35555555566666666554442222 1111       1122223333334444444443 44444444 6899999999


Q ss_pred             HHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcC-------ccHH----HHHHHHHHHHhHhhhhh
Q 012965           75 GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS-------PQYK----ILMIGRILGGIATSLLF  142 (452)
Q Consensus        75 g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~-------~~~~----~l~~~r~l~G~~~~~~~  142 (452)
                      |...+.....+.+..|.+|+++||+|.+|++......++++. +..+.       ++..    .++...+..|+|.|..+
T Consensus       257 g~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvf  336 (417)
T COG2223         257 GLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVF  336 (417)
T ss_pred             HHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchhe
Confidence            988788888899999999999999999999999888887754 33332       3333    34555666666666665


Q ss_pred             hhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHH
Q 012965          143 SAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIIL  216 (452)
Q Consensus       143 ~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~  216 (452)
                      -.. +.+-.+  +-+..       ...... ..++|...-|..-+...+..+ .+...|+......+++..+.+
T Consensus       337 k~I-p~if~~--~~G~v-------~G~vga-~G~lGGf~lp~~~g~~~~~tg-~~~~~f~~~~~~~~~a~v~~~  398 (417)
T COG2223         337 KMI-PVIFPK--ETGAV-------TGIVGA-IGGLGGFFLPLAFGVSLDLTG-SYTGAFMLLLAFYLVALVLTW  398 (417)
T ss_pred             eec-hHHHHh--hhhHH-------HHHHHH-hccccccchhHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHH
Confidence            443 212111  11121       111111 223444444555555555444 466777777777666666554

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.81  E-value=3.7e-07  Score=87.45  Aligned_cols=81  Identities=19%  Similarity=0.174  Sum_probs=57.8

Q ss_pred             HHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHHhHhhhh
Q 012965           63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLL  141 (452)
Q Consensus        63 i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~  141 (452)
                      ..+++|.++.+.+.........+.++.++.|++.||+|||+.+..+..+..++. +..+.++.+.....-.+.+.+.+..
T Consensus       230 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  309 (392)
T PRK10473        230 LMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVG  309 (392)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346789999888887777777777888889999999999999999988887765 4455555544444444444444444


Q ss_pred             hh
Q 012965          142 FS  143 (452)
Q Consensus       142 ~~  143 (452)
                      .+
T Consensus       310 ~~  311 (392)
T PRK10473        310 FG  311 (392)
T ss_pred             hH
Confidence            33

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.80  E-value=1.6e-07  Score=91.29  Aligned_cols=113  Identities=19%  Similarity=0.269  Sum_probs=75.6

Q ss_pred             hhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCC
Q 012965          268 FLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKS  344 (452)
Q Consensus       268 ~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (452)
                      ....|.+.+.  |.+.   +...+...++..++.++.|+++||+|||+.  +..+..+.++........... .      
T Consensus        47 ~~~~p~~~~~--g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~--~~~~~~~~~~~~~~~~~~~~~-~------  115 (438)
T TIGR00712        47 ALAMPYLVEQ--GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVF--LPAGLILSAAVMLLMGFVPWA-T------  115 (438)
T ss_pred             HhhhHHHHHc--CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCcee--hHHHHHHHHHHHHHHhccccc-c------
Confidence            3345544433  4433   677778888999999999999999998873  444444444443332221111 0      


Q ss_pred             CCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          345 GGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       345 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                          ...+...+..++.+++.+..++.....+.|.+|+++|++++|+.+..
T Consensus       116 ----~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~  162 (438)
T TIGR00712       116 ----SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCA  162 (438)
T ss_pred             ----chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHH
Confidence                00123445566778888888888889999999999999999987764

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00897 2A0118 polyol permease family

Probab=98.80  E-value=5.1e-07  Score=86.72  Aligned_cols=147  Identities=16%  Similarity=0.199  Sum_probs=93.1

Q ss_pred             hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHH-HHHHHHHHHH-HHh-----cCccHHHHHH
Q 012965           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACV-TYCLTYILSC-ITK-----HSPQYKILMI  129 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~-~~~~~~~i~~-l~~-----~~~~~~~l~~  129 (452)
                      ..+.|...+++|.+..+.+.+.....+.+.++.+..|+++||+|||+.+. .+.+..+++. ...     ..++.+...+
T Consensus       242 ~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~  321 (402)
T TIGR00897       242 AVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALI  321 (402)
T ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHH
Confidence            34556666889999998887777766777788889999999999988764 3333333322 111     2356777788


Q ss_pred             HHHHHHhHhhhhhhhhhhhhhhhc--ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHH
Q 012965          130 GRILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACF  207 (452)
Q Consensus       130 ~r~l~G~~~~~~~~~~~~~~i~e~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~  207 (452)
                      ..++.|++.+...+.. . .+.|.  ++|+...+    ..    +....+|..++|.+.+.+.+.  ++|...+++.+++
T Consensus       322 ~~~~~G~~~~~~~~~~-~-~~~~~~~~~~g~~~g----~~----~~~~~lg~~~gp~i~g~l~~~--~g~~~~~~~~a~~  389 (402)
T TIGR00897       322 IAIALGIFLAGYVPLA-A-VFPTLAPKHKGAAMS----VL----NLSAGLSAFLAPAIAVLFIGF--FGAIGVVWIFAAL  389 (402)
T ss_pred             HHHHHHHHHHHHHHHH-H-HHHhhCcchhHHHHH----HH----HHHHHHHHHHHHHHHHHHHhh--cchHHHHHHHHHH
Confidence            8899999888765432 3 45554  33333333    22    223445566666777776654  4566777777666


Q ss_pred             HHHHHHHH
Q 012965          208 LAIGMVII  215 (452)
Q Consensus       208 ~~~~~~~~  215 (452)
                      .++.....
T Consensus       390 ~~i~~~~~  397 (402)
T TIGR00897       390 YVVSAFLT  397 (402)
T ss_pred             HHHHHHHH
Confidence            65544443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.80  E-value=2.2e-07  Score=87.79  Aligned_cols=95  Identities=15%  Similarity=0.149  Sum_probs=74.8

Q ss_pred             hhHHHHHhh-cCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCc-cHHHHHHHHHHH
Q 012965           58 PYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSP-QYKILMIGRILG  134 (452)
Q Consensus        58 p~l~~i~~~-~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~-~~~~l~~~r~l~  134 (452)
                      ...|...++ +|.++.+.+.+.....+...++.++.|++.||+|||+.+..+..+.+++. +..+.+ +.+.+.+..++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI  311 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence            444565554 89999999988777777777888889999999999999988877776665 445566 488888999999


Q ss_pred             HhHhhhhhhhhhhhhhhhc
Q 012965          135 GIATSLLFSAFESWLVAEH  153 (452)
Q Consensus       135 G~~~~~~~~~~~~~~i~e~  153 (452)
                      |++.+...+...+ ++.|.
T Consensus       312 g~~~~~~~~~~~~-~~~~~  329 (365)
T TIGR00900       312 GVGYGPINVPQGT-LLQRR  329 (365)
T ss_pred             HHHHHHHHHHHHH-HHHHh
Confidence            9999988887755 66665

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.79  E-value=1.8e-07  Score=88.69  Aligned_cols=110  Identities=16%  Similarity=0.147  Sum_probs=78.7

Q ss_pred             hhhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHh-hhcCCCCc
Q 012965          267 VFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTS-FLVAPSNV  342 (452)
Q Consensus       267 ~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  342 (452)
                      ...+.|.+.++.++.+.   +...+...++..++.++.|+++||+|||+.  +..+..+..+......... ..      
T Consensus        20 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~--~~~~~~~~~i~~~~~~~~~~~~------   91 (366)
T TIGR00886        20 FSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYT--TTLSLLLLAIPCLWAGLAVQSY------   91 (366)
T ss_pred             hHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHH--HHHHHHHHHHHHHHHHHHhhhH------
Confidence            46677765666667655   677778889999999999999999999883  5555555555554443333 22      


Q ss_pred             CCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhh
Q 012965          343 KSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRI  394 (452)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~  394 (452)
                               +...+..++.|++.+ ..+....++.|.+|+++|+++.++...
T Consensus        92 ---------~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~  133 (366)
T TIGR00886        92 ---------SVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAG  133 (366)
T ss_pred             ---------HHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHH
Confidence                     345566677777754 456678899999999999999887653

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.77  E-value=2.4e-07  Score=91.26  Aligned_cols=160  Identities=15%  Similarity=0.103  Sum_probs=92.2

Q ss_pred             hHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhc---CccHH-HHHHHHHH
Q 012965           59 YVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH---SPQYK-ILMIGRIL  133 (452)
Q Consensus        59 ~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~---~~~~~-~l~~~r~l  133 (452)
                      +.|.+.++.|.+..+.+.......+...++.++.|+++||+|||+.++.+..+.+++. +.+.   .+..+ ....+.++
T Consensus       293 ~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~  372 (479)
T PRK10077        293 YAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLF  372 (479)
T ss_pred             HHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence            4467778888887666555444445566777789999999999999999998887764 3222   12111 22334444


Q ss_pred             HHhHhhhhh-hhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhcccCCCcchhhHHHHHH
Q 012965          134 GGIATSLLF-SAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG--NLLVDSFSLGPVAPFDAAACF  207 (452)
Q Consensus       134 ~G~~~~~~~-~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~--~~l~~~~~~~~~~~f~~~~~~  207 (452)
                      .+.+.+... +.. ..++.|.   ++|+...+...    ....++..+++.+.|.+.  +++.+  .++|+..|...+++
T Consensus       373 ~~~~~~~~~~~~~-~~~~~e~~p~~~r~~~~g~~~----~~~~~g~~~~~~~~p~~~~~~~~~~--~~~~~~~~~~~~~~  445 (479)
T PRK10077        373 YVAAFAMSWGPVC-WVLLSEIFPNAIRGKALAIAV----AAQWIANYFVSWTFPMMDKNSWLVA--HFHNGFSYWIYGCM  445 (479)
T ss_pred             HHHHHhccccchh-HHHhHhhCChhHHHHHHHHHH----HHHHHHHHHHHHHhHHHHhccchhh--hccCccHHHHHHHH
Confidence            444444322 333 3367776   34455444332    233344555555555444  33333  34556667776666


Q ss_pred             HHHHHHHHHhccccccCC
Q 012965          208 LAIGMVIILSSWTENYGD  225 (452)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~  225 (452)
                      .++..+......||++++
T Consensus       446 ~~~~~~~~~~~~~e~~~~  463 (479)
T PRK10077        446 GVLAALFMWKFVPETKGK  463 (479)
T ss_pred             HHHHHHHHHhccccCCCC
Confidence            666655555456665543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.77  E-value=9.4e-07  Score=85.72  Aligned_cols=154  Identities=16%  Similarity=0.151  Sum_probs=108.9

Q ss_pred             HhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcc--hHHHHHHHHHHHHH-HHhc--------CccHHHHHHHHH
Q 012965           64 YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRK--RACVTYCLTYILSC-ITKH--------SPQYKILMIGRI  132 (452)
Q Consensus        64 ~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr--~~l~~~~~~~~i~~-l~~~--------~~~~~~l~~~r~  132 (452)
                      .+++|++..+...+.....+.+.+++.++|++.||+|.|  +++..+...+.+.. ...+        .++-+.+.+.-+
T Consensus       309 ~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~  388 (477)
T PF11700_consen  309 TEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAV  388 (477)
T ss_pred             HHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHH
Confidence            368999999998887888888889999999999999999  89988888885533 2222        567888999999


Q ss_pred             HHHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHH
Q 012965          133 LGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM  212 (452)
Q Consensus       133 l~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~  212 (452)
                      +.|+..|...+...+ +.+|.-++++....++. +...    .-....++|.+.+.+.+..+ +-|..+....++.++..
T Consensus       389 ~~G~~~G~~qs~sRs-~~~~LiP~g~e~efFgl-y~i~----gk~ss~lGPll~g~i~~~tg-~~r~g~~~l~~lf~~gl  461 (477)
T PF11700_consen  389 LIGLFMGGIQSASRS-LFSRLIPPGREAEFFGL-YAIT----GKASSWLGPLLFGLITDATG-SQRYGFLFLLVLFLIGL  461 (477)
T ss_pred             HHHHHhhhHHHHHHH-HHHHhCCCchhhHHHHH-HHHH----HHHHHHHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHH
Confidence            999999999999977 88888666665442222 3322    22445566666666665443 24566666666666665


Q ss_pred             HHHHhccccccCC
Q 012965          213 VIILSSWTENYGD  225 (452)
Q Consensus       213 ~~~~~~~~~~~~~  225 (452)
                      ++.. ..++++++
T Consensus       462 ~ll~-~v~~~~g~  473 (477)
T PF11700_consen  462 ILLF-FVDVEKGR  473 (477)
T ss_pred             HHHh-hccchhhh
Confidence            5554 45544443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.76  E-value=9.7e-07  Score=86.60  Aligned_cols=145  Identities=21%  Similarity=0.241  Sum_probs=100.3

Q ss_pred             hhHHHHH-hhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHH
Q 012965           58 PYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG  135 (452)
Q Consensus        58 p~l~~i~-~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G  135 (452)
                      ..+|.+. +++|.++...|.+.+...+++.+++.+.+++.+|+++++.+..+.+.++++. ..+++++.+...+.-++.|
T Consensus       239 aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G  318 (524)
T PF05977_consen  239 ALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAG  318 (524)
T ss_pred             HhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            3445555 5789999999998888888777888889999999999999999988888876 6699999999999999999


Q ss_pred             hHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHH
Q 012965          136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM  212 (452)
Q Consensus       136 ~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~  212 (452)
                      ++.........+ .+.+.   +.||+..+..+    .....+..+|..+.+.+    .+..  +.+..+.+.++..++..
T Consensus       319 ~~~~~~~~~~~t-~~Q~~~P~~~~GRv~si~~----~~~~g~~~lGsll~G~l----a~~~--g~~~al~~a~~~lll~~  387 (524)
T PF05977_consen  319 AAWIIANSSLNT-LVQLSVPDWVRGRVFSIYQ----MVFFGGMPLGSLLWGFL----ADHF--GVRTALLIAGAALLLSA  387 (524)
T ss_pred             HHHHHHHHHHHH-HHHHhCCHHHHhHHHHHHH----HHHHHHHHHHHHHHHHH----HHHh--CHHHHHHHHHHHHHHHH
Confidence            998887766644 44433   45666555433    33334444555444444    3333  33455555555444433


Q ss_pred             H
Q 012965          213 V  213 (452)
Q Consensus       213 ~  213 (452)
                      .
T Consensus       388 ~  388 (524)
T PF05977_consen  388 L  388 (524)
T ss_pred             H
Confidence            3

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.76  E-value=7.9e-07  Score=85.57  Aligned_cols=123  Identities=12%  Similarity=0.049  Sum_probs=79.5

Q ss_pred             HhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhc-----CccHHHHHHHHHHHHhH
Q 012965           64 YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH-----SPQYKILMIGRILGGIA  137 (452)
Q Consensus        64 ~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~-----~~~~~~l~~~r~l~G~~  137 (452)
                      .+++|.++.+.+...........++.++.|+++||+|+|+.+..+.++..++. +...     .++.+.+.+..++.|++
T Consensus       243 ~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g  322 (406)
T PRK15402        243 ISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFG  322 (406)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH
Confidence            46789999888877665555566777889999999999999988887776654 3222     34566778888999999


Q ss_pred             hhhhhhhhhhhh-hhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccC
Q 012965          138 TSLLFSAFESWL-VAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS  194 (452)
Q Consensus       138 ~~~~~~~~~~~~-i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~  194 (452)
                      .+...+...... ..+.+++++..+    ..+....    ++..+++.+.+.+.+..+
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~----~~~~~g~~~~~~l~~~~~  372 (406)
T PRK15402        323 IGLANAGLYRLTLFSSDVSKGTVSA----AMGMLSM----LIFTVGIELSKHAYLGGG  372 (406)
T ss_pred             HHHHhhhHHHHHhhhccccccHHHH----HHHHHHH----HHHHHHHHHHHhcccCCc
Confidence            988766543312 222245555444    2333333    344455555555554333

>PRK09848 glucuronide transporter; Provisional

Probab=98.75  E-value=1.8e-07  Score=91.25  Aligned_cols=119  Identities=8%  Similarity=0.018  Sum_probs=75.1

Q ss_pred             hhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcC--ccHHHHHHHHHHHHhHhhhh
Q 012965           65 STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS--PQYKILMIGRILGGIATSLL  141 (452)
Q Consensus        65 ~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~--~~~~~l~~~r~l~G~~~~~~  141 (452)
                      +.+|.++...+.......+...+..++.+++.||+|+|+++..+.++.+++. +..+.  ++.+.+.+..++.|+|.+..
T Consensus       257 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~  336 (448)
T PRK09848        257 YVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVT  336 (448)
T ss_pred             eecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence            3466554433333333344455677889999999999999999988887765 33443  36777777888999999988


Q ss_pred             hhhhhhhhhhhc---c--cc-cchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012965          142 FSAFESWLVAEH---N--KR-GFEQQWLSITFSKAIFLGNGLVAILSGL  184 (452)
Q Consensus       142 ~~~~~~~~i~e~---~--~r-~~~~~~~~~~~~~~~~~g~~ig~~~~~~  184 (452)
                      .+...+ +..|.   +  ++ .+..+......+....+|..+|+.+.+.
T Consensus       337 ~~~~~a-l~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~  384 (448)
T PRK09848        337 MTVMWA-LEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAF  384 (448)
T ss_pred             HHHHHH-HHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877655 55443   1  11 1233444444555555555555554443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.74  E-value=1.6e-07  Score=91.57  Aligned_cols=147  Identities=12%  Similarity=0.011  Sum_probs=95.5

Q ss_pred             hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhcccccccccccc--CcchHHHHH--HHHHHHHH-HHhcCccHHHHHHHH
Q 012965           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ--GRKRACVTY--CLTYILSC-ITKHSPQYKILMIGR  131 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~--Grr~~l~~~--~~~~~i~~-l~~~~~~~~~l~~~r  131 (452)
                      ..+++...+++|.+..+.+.+.+...+...++.++.|+++||.  ++|+....+  .+..+++. ++...++++.+++.+
T Consensus       261 ~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~  340 (455)
T TIGR00892       261 IIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYC  340 (455)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence            3445566678899999999888887777778888899999984  344434333  23333443 446778899999999


Q ss_pred             HHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHH
Q 012965          132 ILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFL  208 (452)
Q Consensus       132 ~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~  208 (452)
                      ++.|++.+...+...+ ++.|.   ++++...+.        ......+|..++|.+++.+.+..+ +|+..|.+.+++.
T Consensus       341 ~~~G~~~g~~~~~~~~-~~~~~~~~~~~g~~~g~--------~~~~~~lg~~igp~i~G~l~~~~g-~~~~~f~~~~~~~  410 (455)
T TIGR00892       341 IFFGLSFGSVGALLFE-VLMDLVGAQRFSSAVGL--------VTIVECCAVLIGPPLAGRLVDATK-NYKYIFYASGSIV  410 (455)
T ss_pred             HHHHHHhchHHHHHHH-HHHHHhhHHHHhhHHhH--------HHHHHHHHHHccccceeeeehhcC-CcchHHHHhhHHH
Confidence            9999998888777655 65655   333433332        222344666677777777665432 3566676666555


Q ss_pred             HHHHH
Q 012965          209 AIGMV  213 (452)
Q Consensus       209 ~~~~~  213 (452)
                      ++..+
T Consensus       411 li~~~  415 (455)
T TIGR00892       411 VSAGL  415 (455)
T ss_pred             HHHHH
Confidence            54443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.74  E-value=4.1e-07  Score=89.41  Aligned_cols=156  Identities=12%  Similarity=0.010  Sum_probs=91.6

Q ss_pred             hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHh---c--Cc------cH
Q 012965           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK---H--SP------QY  124 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~---~--~~------~~  124 (452)
                      ..+.|...+++|.+..+.+.......+.+.++.++.|+++||+|||+.+..+..+.+++. +.+   .  .+      +.
T Consensus       304 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (481)
T TIGR00879       304 MYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGN  383 (481)
T ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhH
Confidence            344566778899998777777777777777888889999999999999998877776654 333   1  22      22


Q ss_pred             HHHHHHHHHHHhHhhhhhhhhhhhhhhhcc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhh
Q 012965          125 KILMIGRILGGIATSLLFSAFESWLVAEHN---KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPF  201 (452)
Q Consensus       125 ~~l~~~r~l~G~~~~~~~~~~~~~~i~e~~---~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f  201 (452)
                      ..+....+..+.......+.. ..++.|..   +|+...+.    .+    ....+|..+++.+.+.+.++.+  |+..|
T Consensus       384 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~----~~----~~~~lg~~i~~~~~~~~~~~~~--~~~~f  452 (481)
T TIGR00879       384 VAIVFILLFIAFFAMGWGPVP-WVIVSEIFPLSLRPKGISI----AV----AANWLANFIVGFLFPTMLESIG--VGGVF  452 (481)
T ss_pred             HHHHHHHHHHHHHHccccCee-hhhhhccCChHHHHHHHHH----HH----HHHHHHHHHHHHHHHHHHHhcC--cccee
Confidence            233333333332222232333 32556652   33333332    22    2233556666666666665444  45667


Q ss_pred             HHHHHHHHHHHHHHHhcccccc
Q 012965          202 DAAACFLAIGMVIILSSWTENY  223 (452)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~  223 (452)
                      .+.+++.++..+......||++
T Consensus       453 ~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       453 IFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             hhHHHHHHHHHHHHheecccCC
Confidence            7766666666555554556544

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.73  E-value=1.6e-06  Score=81.84  Aligned_cols=148  Identities=14%  Similarity=0.067  Sum_probs=98.9

Q ss_pred             HhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch--HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHH
Q 012965          242 AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH--GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIV  319 (452)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~  319 (452)
                      +++.+++...+.+...+ .+.....+.+++--++++..+.+.  |...+..-.+.++.-+..+++.+|+|+-+  ++.++
T Consensus       366 ~~~~s~~~llff~~av~-mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~--v~~lg  442 (618)
T KOG3762|consen  366 KVFASPHILLFFFVAVV-MGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVN--VMYLG  442 (618)
T ss_pred             HHhcCCCEEehhHHHHH-HHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccc--eeeeh
Confidence            44555554443333222 222233344444445555443332  55555555778888899999999999877  35555


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh----
Q 012965          320 FVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP----  395 (452)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~----  395 (452)
                      ..+...=++......+.               |..+..-++-|+..+..|...-++++...|++.|.++.++.+..    
T Consensus       443 La~~~~Rf~~~S~L~n~---------------W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~Gl  507 (618)
T KOG3762|consen  443 LACNVGRFLYYSYLQNP---------------WMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGL  507 (618)
T ss_pred             hhHHHHHHHHHHHhcCc---------------hheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhccc
Confidence            55555555555444443               57778889999999999999999999999999999998887763    


Q ss_pred             ---hhHHHHHHHhcc
Q 012965          396 ---LNIFVCVVLYNV  407 (452)
Q Consensus       396 ---~~~~~~~~l~~~  407 (452)
                         .|.++|+.+...
T Consensus       508 G~g~GslIGG~~v~~  522 (618)
T KOG3762|consen  508 GKGLGSLIGGFVVER  522 (618)
T ss_pred             Ccchhhhhhhhhhee
Confidence               566777777655

>TIGR00896 CynX cyanate transporter

Probab=98.73  E-value=7.7e-07  Score=83.99  Aligned_cols=131  Identities=12%  Similarity=0.080  Sum_probs=82.0

Q ss_pred             hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhcccccccccccc-CcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHH
Q 012965           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILG  134 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~-Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~  134 (452)
                      ..++|...++.|.+..+.+...+...+...+++++.|++.||+ +||+.+..+..+.+++. ...+.++.+... .-.+.
T Consensus       217 ~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~  295 (355)
T TIGR00896       217 IGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVL  295 (355)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHH
Confidence            4456677778899999999888888887888889999999999 56667777777776664 344444333222 45678


Q ss_pred             HhHhhhhhhhhhhhhhhhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccC
Q 012965          135 GIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS  194 (452)
Q Consensus       135 G~~~~~~~~~~~~~~i~e~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~  194 (452)
                      |++.+...+...+ .+.+. ++++...... ...+   .. ..++..++|.+.+.+.++.+
T Consensus       296 g~~~g~~~~~~~~-~~~~~~~~~~~~g~~~-~~~~---~~-~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       296 GLGQGGAFPLALT-LIGLRSRQAAQAAALS-AMAQ---SI-GYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHhhhhHhHHHHH-HHHHhccCHHHHHHHH-HHHH---HH-HHHHHHHHHHHHHHHHHHhc
Confidence            9999888877645 44332 2222222211 1111   11 22444566666666665443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.72  E-value=2.5e-07  Score=86.56  Aligned_cols=145  Identities=10%  Similarity=0.085  Sum_probs=102.8

Q ss_pred             cchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHHhHhhhhhhhhhhhh
Q 012965           71 KGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWL  149 (452)
Q Consensus        71 ~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~  149 (452)
                      +...|.+.+.+...-.+.-.+..++.+|+|.|+.++++..+.++=. .++++++.+.+.+.+.+.|+-.+....+... |
T Consensus       258 ~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fk-Y  336 (412)
T PF01306_consen  258 NQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFK-Y  336 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            3445666666555555555568999999999999999999998865 7899999999999999999999999888877 8


Q ss_pred             hhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHhccccc
Q 012965          150 VAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTEN  222 (452)
Q Consensus       150 i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  222 (452)
                      +++..+++..    ...+..+...+..+|..+.+.+++.+.|+.|.  +..|++.+.+.+...++..+.++++
T Consensus       337 I~~~fd~rls----At~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~--~~tylimg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  337 ITAHFDKRLS----ATLYLVGFQFAKQIGIIILSPLAGYLYDRIGF--QHTYLIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             HHHHS-GGGH----HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred             HHHhCCHhHH----HHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCc--HHHHHHHHHHHHHHHHHheeeecCC
Confidence            8877333332    22455556667778888888899998876544  5677777776665555555444443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.72  E-value=6.4e-07  Score=82.84  Aligned_cols=101  Identities=22%  Similarity=0.289  Sum_probs=70.2

Q ss_pred             hhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhcccccccccc----ccCcchHHHHHHHHHH-HHH-HHhcCccHH
Q 012965           52 GDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLAD----KQGRKRACVTYCLTYI-LSC-ITKHSPQYK  125 (452)
Q Consensus        52 ~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~D----r~Grr~~l~~~~~~~~-i~~-l~~~~~~~~  125 (452)
                      +...+..++++..++.|++....+.+-..+-+.+.+.+|+.|..+|    |+||||.++....+.. ++. +..++.++.
T Consensus        47 ~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig  126 (498)
T KOG0637|consen   47 GWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIG  126 (498)
T ss_pred             HHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhh
Confidence            4444567777888999999888887778888889999999999999    6899998887766553 354 445544333


Q ss_pred             -----------------HHHHHHHHHHhHhhhhhhhhhhhhhhhc
Q 012965          126 -----------------ILMIGRILGGIATSLLFSAFESWLVAEH  153 (452)
Q Consensus       126 -----------------~l~~~r~l~G~~~~~~~~~~~~~~i~e~  153 (452)
                                       .++++-.+.=++.-.....+.+ ++.|.
T Consensus       127 ~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra-~L~Dl  170 (498)
T KOG0637|consen  127 LLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRA-LLADL  170 (498)
T ss_pred             HHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHH-HHHHh
Confidence                             3334444444455555566656 66665

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.72  E-value=1.3e-06  Score=83.94  Aligned_cols=143  Identities=15%  Similarity=0.232  Sum_probs=84.7

Q ss_pred             HHHhhcCCCcchhHHHHHH-HHhhhhhccccccccccccCcchHHHHHHHHHHHHH----HHhcC-ccHHHHHHHHH---
Q 012965           62 YLYSTYGFGKGEIGQLFIA-GFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC----ITKHS-PQYKILMIGRI---  132 (452)
Q Consensus        62 ~i~~~~g~s~~~~g~~~~~-~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~----l~~~~-~~~~~l~~~r~---  132 (452)
                      .+.+++|+++.+++.+... +.....++.++.|++.||+|||+.+..+..+..+..    ..++. ++.+.+.+.-+   
T Consensus       235 ~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  314 (402)
T PRK11902        235 FLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIEN  314 (402)
T ss_pred             HHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            4556789999999987654 333455667789999999999998877776665542    12344 45565555544   


Q ss_pred             -HHHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHH
Q 012965          133 -LGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIG  211 (452)
Q Consensus       133 -l~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~  211 (452)
                       ..|++.+...+.... ++.+..+ +...+.    .+..    ..++...++.+++.+.+.  ++|+..|...+.+.++.
T Consensus       315 ~~~g~~~~~~~~~~~~-~~~~~~~-~~~~~~----~~~~----~~l~~~~~~~~~G~l~~~--~G~~~~f~~~~~~~~~~  382 (402)
T PRK11902        315 LCGGMGTAAFVALLMA-LCNRSFS-ATQYAL----LSAL----ASVGRVYVGPTSGYLVEA--YGWPGFYLMTVVIALPG  382 (402)
T ss_pred             HHHHHHHHHHHHHHHH-hcCCCCc-HHHHHH----HHHH----HHHHHHHHHHHHHHHHHH--hChHHHHHHHHHHHHHH
Confidence             445555555555433 4554422 111121    1211    223444344567777655  45677788877777666


Q ss_pred             HHHHH
Q 012965          212 MVIIL  216 (452)
Q Consensus       212 ~~~~~  216 (452)
                      .++..
T Consensus       383 ~~~~~  387 (402)
T PRK11902        383 LALLW  387 (402)
T ss_pred             HHHHH
Confidence            55544

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.72  E-value=1.5e-06  Score=83.10  Aligned_cols=142  Identities=12%  Similarity=-0.059  Sum_probs=88.5

Q ss_pred             HHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHHhHhhhh
Q 012965           63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLL  141 (452)
Q Consensus        63 i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~  141 (452)
                      ..+.+|.++.+.|.+.....++..++++..+++.||+++|+++..+... ++.. +.++.++++...+..++.|++.+..
T Consensus       232 ~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~  310 (393)
T PRK11195        232 APVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GLVVLLMALQHSLLPAYPLLILIGALGGFF  310 (393)
T ss_pred             HHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Confidence            3467899999999888877777778888899999999999988877533 3333 4466777777778888999998887


Q ss_pred             hhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHH
Q 012965          142 FSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIG  211 (452)
Q Consensus       142 ~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~  211 (452)
                      .+...+ .+.|..++....+......+....++..++..+...+     +..+.+++..+...+.+....
T Consensus       311 ~~~~~~-~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  374 (393)
T PRK11195        311 VVPMNA-LLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-----VKLGVPVVAVIVGFGLLVALA  374 (393)
T ss_pred             hhhHHH-HHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-----HHcCCCHHHHHHHHHHHHHHH
Confidence            766655 5555422211112222233334444444444333322     234555555555555543333

>TIGR00895 2A0115 benzoate transport

Probab=98.71  E-value=1.5e-07  Score=90.18  Aligned_cols=110  Identities=19%  Similarity=0.237  Sum_probs=78.3

Q ss_pred             hhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCC
Q 012965          268 FLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKS  344 (452)
Q Consensus       268 ~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (452)
                      ....|.+.+ .++.+.   +...+...++.+++.++.|+++||+|||+  .+..+..+..+...........        
T Consensus        37 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~--~~~~~~~~~~~~~~~~~~~~~~--------  105 (398)
T TIGR00895        37 GFAAPAISA-EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKR--VLLWSILLFSVFTLLCALATNV--------  105 (398)
T ss_pred             HhhHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHH--HHHHHHHHHHHHHHHHHHccch--------
Confidence            444555544 345544   56677777889999999999999999887  3444444444444333322211        


Q ss_pred             CCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          345 GGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       345 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                             +...+..++.+++.+...+...++..|.+|+++|+++.|+.+..
T Consensus       106 -------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  149 (398)
T TIGR00895       106 -------TQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCG  149 (398)
T ss_pred             -------HHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhH
Confidence                   35566778888899988999999999999999999999887764

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.71  E-value=1.7e-07  Score=92.44  Aligned_cols=127  Identities=17%  Similarity=0.150  Sum_probs=87.4

Q ss_pred             hhhhccccccCCCCCc---hHHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcC
Q 012965          267 VFLWTPALSPNDEEIP---HGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVK  343 (452)
Q Consensus       267 ~~~~~p~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (452)
                      .....|.+.++ .+.+   .++..+...++..++.++.|++.||+|||+  .+..+..+..+.........+.       
T Consensus        21 ~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~--~~~~~~~~~~~~~~~~~~~~~~-------   90 (485)
T TIGR00711        21 VNVAIPTIAGD-LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRR--LFLISTFAFTLGSLLCGVAPNL-------   90 (485)
T ss_pred             HHHHHHHHHHh-cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHH--HHHHHHHHHHHHHHHHhCcCCH-------
Confidence            34456655543 4443   267778888999999999999999999988  3445544444444433222111       


Q ss_pred             CCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh------hhHHHHHHHhccccCC
Q 012965          344 SGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNVDAFP  411 (452)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~  411 (452)
                              +..++..++.|++.+...+...+++.|.+|+++|+++.++.+..      .+..+++.+.+..+|.
T Consensus        91 --------~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~  156 (485)
T TIGR00711        91 --------ELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWR  156 (485)
T ss_pred             --------HHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCce
Confidence                    35667788889998988899999999999999999999887654      2334445555544443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.71  E-value=1.7e-07  Score=89.64  Aligned_cols=102  Identities=19%  Similarity=0.317  Sum_probs=76.9

Q ss_pred             CCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhh
Q 012965          277 NDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSL  353 (452)
Q Consensus       277 ~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (452)
                      +..+.+.   +...+...++..++.++.|++.||+|||+.  +..+..+..+.........+.               +.
T Consensus        22 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~--~~~~~~~~~~~~~~~~~~~~~---------------~~   84 (399)
T TIGR00893        22 EDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKT--LAVFIVIWGVFTGLQAFAGAY---------------VS   84 (399)
T ss_pred             HhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCccee--eHHHHHHHHHHHHHHHHHcCH---------------HH
Confidence            3445443   677888889999999999999999999983  444444444444443332222               46


Q ss_pred             HHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          354 QLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       354 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      ..+..++.|++.+...+....++.|.+|+++|++.+++.+..
T Consensus        85 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  126 (399)
T TIGR00893        85 LYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSA  126 (399)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            677788899999988999999999999999999999887764

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.70  E-value=2.7e-07  Score=91.07  Aligned_cols=134  Identities=11%  Similarity=0.026  Sum_probs=89.1

Q ss_pred             hhhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcC
Q 012965          267 VFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVK  343 (452)
Q Consensus       267 ~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (452)
                      +..-.|.+.++ +|.+.   ++..+.+.++...+.++.|+++||+|||+  .+..+..+..+.........+.       
T Consensus        25 v~~a~p~i~~~-l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~--~l~~~~~~~~~~~~~~~~a~~~-------   94 (495)
T PRK14995         25 LHVAAPTLSMT-LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKR--LLMLGGTLFGLASLAAAFSPTA-------   94 (495)
T ss_pred             HHHHHHHHHHH-hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHcCCH-------
Confidence            45556776543 44432   67777788888889999999999999998  3555555555555544433222       


Q ss_pred             CCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcC-Ccccccchhhhhhhh------hhHHHHHHHhccccCCchHHH
Q 012965          344 SGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYI-PEEARSTIMNFFRIP------LNIFVCVVLYNVDAFPITVMF  416 (452)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~~~~~~  416 (452)
                              +..+++-.+.|++.+...|.....+.+.+ |+++|++++|+....      .++.+++.+.+..+  +...+
T Consensus        95 --------~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g--wr~~f  164 (495)
T PRK14995         95 --------SWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY--WGSVF  164 (495)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHHHH
Confidence                    35667778889988888887777776665 778899998887664      34455666666544  33344


Q ss_pred             HHHH
Q 012965          417 GMCS  420 (452)
Q Consensus       417 ~~~~  420 (452)
                      ....
T Consensus       165 ~i~~  168 (495)
T PRK14995        165 LINV  168 (495)
T ss_pred             HHHH
Confidence            4433

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.70  E-value=2.3e-07  Score=89.96  Aligned_cols=102  Identities=15%  Similarity=0.100  Sum_probs=76.9

Q ss_pred             CCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhh
Q 012965          277 NDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSL  353 (452)
Q Consensus       277 ~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (452)
                      +..+.+.   +...+...++..++.++.|+++||+|||+  .+..+....+++........+.               +.
T Consensus        46 ~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~--~l~~~~~~~~~~~~~~~~~~~~---------------~~  108 (426)
T PRK12307         46 ADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKP--LMMWSIVAYSVGTGLSGLASGV---------------IM  108 (426)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH--HHHHHHHHHHHHHHHHHHHhHH---------------HH
Confidence            3445443   66777788899999999999999999988  3555555555554444333332               36


Q ss_pred             HHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          354 QLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       354 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      ..+.-.+.|++.+...+....++.|.+|+++|+++.|+....
T Consensus       109 l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  150 (426)
T PRK12307        109 LTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSG  150 (426)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHH
Confidence            677778889998888899999999999999999999887664

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.70  E-value=5.6e-07  Score=88.68  Aligned_cols=159  Identities=11%  Similarity=0.092  Sum_probs=93.2

Q ss_pred             hcchh-HHHHHHHHHhhhchhhhhhhhhccccccCCCCCchH---HHHHHHHHHHHHHhHHHHHHhcc-CCCCchhHHHH
Q 012965          244 ASDEK-IALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHG---FIFATFMLASMLGSSLASRLMAR-SPPRVESYMQI  318 (452)
Q Consensus       244 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~g~l~dr-~g~~~~~~~~~  318 (452)
                      +++|+ ++.......+.... ++....+.|.|+++.+|.+..   ..............+++|+++|| +|||+.  +..
T Consensus        17 ~~~p~~~~~~~~~~~~~~~~-~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~--~~~   93 (500)
T PRK09584         17 FKQPKAFYLIFSIELWERFG-YYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRV--IML   93 (500)
T ss_pred             hcCCchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH--HHH
Confidence            45665 44444344444444 444678899998877777653   33333333334445689999999 598873  555


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCccc--ccchhhhhhhh-
Q 012965          319 VFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEA--RSTIMNFFRIP-  395 (452)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~--r~~~~g~~~~~-  395 (452)
                      +..+..++..........              .....++..+.+++.+...+...++..|.+|++.  |..++++.+.. 
T Consensus        94 g~~~~~ig~~l~~~~~~~--------------~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~  159 (500)
T PRK09584         94 GAIVLAIGYALVAWSGHD--------------AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSI  159 (500)
T ss_pred             HHHHHHHHHHHHHHhccc--------------HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHH
Confidence            555555444333321111              0234556677888888888888899999998654  34456554443 


Q ss_pred             -----hhHHHHHHHhccccCCchHHHHHHHH
Q 012965          396 -----LNIFVCVVLYNVDAFPITVMFGMCSI  421 (452)
Q Consensus       396 -----~~~~~~~~l~~~~~~~~~~~~~~~~~  421 (452)
                           .++.+++++.+..  ++...+...++
T Consensus       160 ~iG~~~gp~i~g~l~~~~--g~~~~F~i~~i  188 (500)
T PRK09584        160 NIGSFFSMLATPWLAAKY--GWSVAFALSVV  188 (500)
T ss_pred             HHHHHHHHHHHHHHHHhh--CHHHHHHHHHH
Confidence                 3445556665543  45555555543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.67  E-value=6.3e-07  Score=86.30  Aligned_cols=130  Identities=11%  Similarity=0.063  Sum_probs=83.1

Q ss_pred             CCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhH
Q 012965          278 DEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQ  354 (452)
Q Consensus       278 ~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (452)
                      .++.+.   +...+.+.++..+++++.|+++||+|||+  .+..+..+..++........+.               +..
T Consensus        45 ~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~--~l~~~~~~~~~~~~~~~~a~~~---------------~~l  107 (413)
T PRK15403         45 DFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRP--VLITGALIFTLACAATLFTTSM---------------TQF  107 (413)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchH--HHHHHHHHHHHHHHHHHHcCCH---------------HHH
Confidence            344444   45667777889999999999999999998  3544544444444433322211               355


Q ss_pred             HHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh------hhHHHHHHHhccccCCchHHHHHHHHHHHHH
Q 012965          355 LLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNVDAFPITVMFGMCSIFLLVA  426 (452)
Q Consensus       355 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  426 (452)
                      +++-++.|++.+...+.......|.+|+++|++.++..+..      .++.+++.+.+.  .++...+...++..++.
T Consensus       108 ~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~--~gw~~~f~~~~~~~~i~  183 (413)
T PRK15403        108 LIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF--VHWKVLFAIIAVMGLIA  183 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHH
Confidence            66677778877765667778899999999988887765553      334555555544  34445555444443333

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.66  E-value=1.5e-06  Score=84.81  Aligned_cols=150  Identities=11%  Similarity=0.028  Sum_probs=78.2

Q ss_pred             hhhHHHHHh-hcCCCcchhHHHHHHHHhhhhhcccccccccccc--CcchHHH-HHHHHHHHHH-HH--hcCccHHHHHH
Q 012965           57 GPYVYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ--GRKRACV-TYCLTYILSC-IT--KHSPQYKILMI  129 (452)
Q Consensus        57 ~p~l~~i~~-~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~--Grr~~l~-~~~~~~~i~~-l~--~~~~~~~~l~~  129 (452)
                      ..++|...+ +.|.+..+.+.......+.+.++.++.|+++||+  |||+... ....+..++. +.  ...++.+...+
T Consensus       273 ~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  352 (452)
T PRK11273        273 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMA  352 (452)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHH
Confidence            445566665 4789988888776666666667778899999999  5554322 2222233332 11  22345555555


Q ss_pred             HHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHH
Q 012965          130 GRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAAC  206 (452)
Q Consensus       130 ~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~  206 (452)
                      ..++.|.+........ ..+..|.   ++|+...+..+.       .+...+...+|.+.+.+.++.+  |+..|.+.+.
T Consensus       353 ~~~~~g~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~-------~~~~g~~~~g~~v~g~l~~~~g--~~~~f~~~~~  422 (452)
T PRK11273        353 CMIVIGFLIYGPVMLI-GLHALELAPKKAAGTAAGFTGL-------FGYLGGSVAASAIVGYTVDFFG--WDGGFMVMIG  422 (452)
T ss_pred             HHHHHHHHHHhHHHHH-HHHHHHHcChhhhhhHHHHHHH-------HHHHHHHHhhhhhHHHHHHHhc--chHHHHHHHH
Confidence            5555555432222222 2234444   334444442222       1221122335566666665544  5667776666


Q ss_pred             HHHHHHHHHH
Q 012965          207 FLAIGMVIIL  216 (452)
Q Consensus       207 ~~~~~~~~~~  216 (452)
                      ..+++.+...
T Consensus       423 ~~~~~~~~~~  432 (452)
T PRK11273        423 GSILAVILLI  432 (452)
T ss_pred             HHHHHHHHHH
Confidence            5555544443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.65  E-value=6.1e-05  Score=71.60  Aligned_cols=114  Identities=19%  Similarity=0.090  Sum_probs=67.1

Q ss_pred             ccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCccc
Q 012965          273 ALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISF  349 (452)
Q Consensus       273 ~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (452)
                      .|+... |.++   |..-+...+.++.++.+.+++.+|+|..+.  -..+...-.. ++.+.........    ++....
T Consensus       283 ~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~--G~~~l~~q~~-~L~~~v~~~~~~~----~~~~~~  354 (432)
T PF06963_consen  283 AYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRA--GLWSLWWQWV-CLALCVVSFWAPG----SPFSSI  354 (432)
T ss_pred             HHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh--HHHHHHHHHH-HHHHHHHHHhcCC----CCchhh
Confidence            344433 5544   455566667899999999999999997763  2233222222 2222211111110    010122


Q ss_pred             chhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhh
Q 012965          350 SGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRI  394 (452)
Q Consensus       350 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~  394 (452)
                      ....++.+..+.-+|.=.......-+.+|.+|+++||+..|.-+.
T Consensus       355 s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~s  399 (432)
T PF06963_consen  355 SAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNS  399 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHH
Confidence            234555566666666655667778889999999999999877443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK11043 putative transporter; Provisional

Probab=98.65  E-value=5.9e-07  Score=86.30  Aligned_cols=135  Identities=13%  Similarity=0.009  Sum_probs=83.2

Q ss_pred             hhhcccc--ccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 012965          268 FLWTPAL--SPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNV  342 (452)
Q Consensus       268 ~~~~p~~--~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (452)
                      ..+.|.+  .++..+.+.   +...+...++..++.++.|+++||+|||+.  +..+..+..+.........+.      
T Consensus        23 ~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~--~~~~~~~~~~~~~~~~~~~~~------   94 (401)
T PRK11043         23 DMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPV--LLAGLSLFALGSLGMLWVESA------   94 (401)
T ss_pred             HHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHH--HHHHHHHHHHHHHHHHHhcCH------
Confidence            4445544  234445544   667777788899999999999999999983  444444444443333322211      


Q ss_pred             CCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh------hhHHHHHHHhccccCCchHHH
Q 012965          343 KSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNVDAFPITVMF  416 (452)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~~~~~~  416 (452)
                               +...+...+.|++.+...+...+...|.+|++++++..+..+..      .++.+++.+.+..  ++...+
T Consensus        95 ---------~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~--g~~~~~  163 (401)
T PRK11043         95 ---------AQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF--GWQAIF  163 (401)
T ss_pred             ---------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--ChHHHH
Confidence                     34555667777777766777788899999998887776655432      3334555555543  343444


Q ss_pred             HHHHH
Q 012965          417 GMCSI  421 (452)
Q Consensus       417 ~~~~~  421 (452)
                      .....
T Consensus       164 ~~~~~  168 (401)
T PRK11043        164 ATLFA  168 (401)
T ss_pred             HHHHH
Confidence            43333

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.65  E-value=4.5e-07  Score=86.30  Aligned_cols=108  Identities=9%  Similarity=0.096  Sum_probs=77.1

Q ss_pred             hccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCC
Q 012965          270 WTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGG  346 (452)
Q Consensus       270 ~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (452)
                      ..|.+.++ .+.+.   +...+...++..++.++.|++.||+|||+  .+..+.....+...........          
T Consensus        13 ~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~--~~~~~~~~~~i~~~~~~~~~~~----------   79 (377)
T PRK11102         13 ALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKP--VILGGTLVFALAAVACALAQTI----------   79 (377)
T ss_pred             cHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChH--HHHHHHHHHHHHHHHHHHHccH----------
Confidence            34444443 45543   56677788889999999999999999887  3555554444444443332222          


Q ss_pred             cccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          347 ISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       347 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                           +...+...+.|++.+...+...++..|.+|+++|++.+++.+..
T Consensus        80 -----~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (377)
T PRK11102         80 -----DQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLV  123 (377)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence                 35566677888888888888999999999999999998887653

>PRK09669 putative symporter YagG; Provisional

Probab=98.63  E-value=6e-07  Score=87.46  Aligned_cols=109  Identities=16%  Similarity=0.124  Sum_probs=69.2

Q ss_pred             HHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHH-HHH-hc-CccHHHHHHHHHHHHhHhhhhhhhhhhhhhhh
Q 012965           76 QLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILS-CIT-KH-SPQYKILMIGRILGGIATSLLFSAFESWLVAE  152 (452)
Q Consensus        76 ~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~-~l~-~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e  152 (452)
                      .+.....+.+.+..+++++++||+|+|+.+..+....++. ... .. .++.+.+++..++.|++.+...+...+ +++|
T Consensus       268 ~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a-m~ad  346 (444)
T PRK09669        268 LFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS-MFSD  346 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH-HHHh
Confidence            4444444555566678899999999999999887766543 322 22 457777888889999999988877755 6554


Q ss_pred             c---c--ccc-chhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012965          153 H---N--KRG-FEQQWLSITFSKAIFLGNGLVAILSGLF  185 (452)
Q Consensus       153 ~---~--~r~-~~~~~~~~~~~~~~~~g~~ig~~~~~~l  185 (452)
                      .   +  +.| ++.+......+....+|.++|+.+++.+
T Consensus       347 ~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l  385 (444)
T PRK09669        347 VVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI  385 (444)
T ss_pred             hhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4   1  112 2333333444444555555555544433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.61  E-value=3.3e-07  Score=87.06  Aligned_cols=108  Identities=18%  Similarity=0.330  Sum_probs=79.2

Q ss_pred             hccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCC
Q 012965          270 WTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGG  346 (452)
Q Consensus       270 ~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (452)
                      ..|.+. +.++.+.   +...+...++..++.++.|+++||+|||+  .+..+..+..+...+.......          
T Consensus        17 ~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~--~~~~~~~~~~~~~~~~~~~~~~----------   83 (379)
T TIGR00881        17 AMPYLV-EEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRV--FLPIGLILCAIVNLFFGFSTSL----------   83 (379)
T ss_pred             hhHHHH-HHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCee--hhHHHHHHHHHHHHHHHHhhhH----------
Confidence            344433 3344433   67778888999999999999999999998  3555555555554444333322          


Q ss_pred             cccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          347 ISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       347 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                           +..++..++.|++.+...+...+++.|.+|+++|+++.++.+..
T Consensus        84 -----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  127 (379)
T TIGR00881        84 -----WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCS  127 (379)
T ss_pred             -----HHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhcc
Confidence                 46667778888999988999999999999999999998877664

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.61  E-value=1.2e-06  Score=83.92  Aligned_cols=107  Identities=9%  Similarity=0.089  Sum_probs=72.0

Q ss_pred             ccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCc
Q 012965          271 TPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGI  347 (452)
Q Consensus       271 ~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (452)
                      .|.+. +..+.+.   +...+...++..++.++.|+++||+|||+.  +..+.....+.........+.           
T Consensus        31 ~~~i~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~--~~~~~~~~~~~~~~~~~~~~~-----------   96 (394)
T PRK11652         31 IADMA-RDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPV--ILVGMSIFILGTLVALFAHSL-----------   96 (394)
T ss_pred             HHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHH--HHHHHHHHHHHHHHHHHHccH-----------
Confidence            44443 3345544   567777888899999999999999999883  444444444333332222111           


Q ss_pred             ccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          348 SFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       348 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                          +...+...+.|++.+...+....+..|.+++++++.+.+..+..
T Consensus        97 ----~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (394)
T PRK11652         97 ----TVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMG  140 (394)
T ss_pred             ----HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence                35566677778887777777788889999988888887776553

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.60  E-value=1e-06  Score=84.45  Aligned_cols=110  Identities=10%  Similarity=-0.063  Sum_probs=74.1

Q ss_pred             ccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCc
Q 012965          271 TPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGI  347 (452)
Q Consensus       271 ~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (452)
                      .+.+.+++++.+.   +...++..++..+.++..|++.||+|.|+.  ...+..+..+......+..+...      +  
T Consensus        57 ~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v--~~~~~ll~~i~~~~~~~a~~~~~------~--  126 (462)
T PRK15034         57 TVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRW--TVFSTAILIIPCVWLGIAVQNPN------T--  126 (462)
T ss_pred             HHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH--HHHHHHHHHHHHHHHHHHHcccC------C--
Confidence            3434444577765   556666778888889999999999999983  44444444444443332211100      0  


Q ss_pred             ccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhh
Q 012965          348 SFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFR  393 (452)
Q Consensus       348 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~  393 (452)
                        ..+..++..++.|++ +..++.....+++.+|+++||+++|+..
T Consensus       127 --s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~  169 (462)
T PRK15034        127 --PFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGING  169 (462)
T ss_pred             --CHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHH
Confidence              013566777777876 6677889999999999999999999874

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.60  E-value=2.1e-06  Score=83.28  Aligned_cols=134  Identities=20%  Similarity=0.231  Sum_probs=93.7

Q ss_pred             HHhhhhhhhhHHHHHh-hcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcC--ccHH
Q 012965           50 MAGDWLQGPYVYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS--PQYK  125 (452)
Q Consensus        50 ~~~~~~~~p~l~~i~~-~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~--~~~~  125 (452)
                      ...........+...+ .+|.+ ...+.......+.+.+..+++++++||+|+|+++..+..+.+++. +..+.  +|.+
T Consensus       238 ~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (428)
T PF13347_consen  238 WLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPW  316 (428)
T ss_pred             HhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHH
Confidence            3344443444444444 34544 556666667777778888899999999999999999999998875 44554  5999


Q ss_pred             HHHHHHHHHHhHhhhhhhhhhhhhhhhc------ccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012965          126 ILMIGRILGGIATSLLFSAFESWLVAEH------NKRGFEQQWLSITFSKAIFLGNGLVAILSGLF  185 (452)
Q Consensus       126 ~l~~~r~l~G~~~~~~~~~~~~~~i~e~------~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l  185 (452)
                      .+++.-++.|++.+...+...+ +++|.      +...++.+......+...-++.+++..+.+.+
T Consensus       317 ~~~i~~~l~gi~~~~~~~~~~a-~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~  381 (428)
T PF13347_consen  317 LVLILFILAGIGYGAFFVIPWA-MLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL  381 (428)
T ss_pred             HHHHHHHHhHhhhccccccccc-ccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence            9999999999999999877755 65554      22234566666666666666666666555443

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.59  E-value=8.2e-07  Score=87.91  Aligned_cols=110  Identities=14%  Similarity=0.067  Sum_probs=78.8

Q ss_pred             hhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCC
Q 012965          268 FLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKS  344 (452)
Q Consensus       268 ~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (452)
                      ....|.+. +.++.+.   +...+...++..++.++.|++.||+|||+  .+..+..+.++.........+.        
T Consensus        40 ~~~~~~i~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~--~~~~~~~~~~~~~~~~~~~~~~--------  108 (496)
T PRK03893         40 TLVLTEVQ-GEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRL--AMVISIVLFSVGTLACGFAPGY--------  108 (496)
T ss_pred             HHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH--HHHHHHHHHHHHHHHHHHHhHH--------
Confidence            34445443 3455544   56667777889999999999999999988  3444544444444444333222        


Q ss_pred             CCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          345 GGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       345 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                             +...+..++.|++.+...+....++.|.+|+++|++++++.+..
T Consensus       109 -------~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  152 (496)
T PRK03893        109 -------WTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISG  152 (496)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence                   35667778888888888888999999999999999988877664

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.59  E-value=1.4e-06  Score=85.52  Aligned_cols=142  Identities=14%  Similarity=0.048  Sum_probs=80.8

Q ss_pred             HHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcch-------HHHHHHHHHHHHH-HHhcCccHHHHHHHHHHH
Q 012965           63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKR-------ACVTYCLTYILSC-ITKHSPQYKILMIGRILG  134 (452)
Q Consensus        63 i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~-------~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~  134 (452)
                      +.+++|.+..+.+.+.+...+.+.++.++.|+++||+|||+       .......+.++.. +....++.+...+.-++.
T Consensus       279 l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~  358 (476)
T PLN00028        279 FYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILF  358 (476)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            34678999999998888877878888899999999998762       2222222223322 335566666666666666


Q ss_pred             HhHhhhhhhhhhhhhhhhcc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHH
Q 012965          135 GIATSLLFSAFESWLVAEHN--KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM  212 (452)
Q Consensus       135 G~~~~~~~~~~~~~~i~e~~--~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~  212 (452)
                      +++.+...+...+ ++.+..  .++...+        ....+..+|+.+++.+.+.   ....+|+..|...+++.+++.
T Consensus       359 ~~~~~~~~~~~~~-~~~~~~~~~~g~~~g--------~~~~~g~lg~~i~~~l~~~---~~~~~y~~~f~~~~~~~~i~~  426 (476)
T PLN00028        359 SIFVQAACGATFG-IVPFVSRRSLGVISG--------LTGAGGNVGAVLTQLLFFT---GSSYSTETGISLMGVMIIACT  426 (476)
T ss_pred             HHHHHHhhhhhcc-cCcccChhhchhhhh--------hhhccccHHHHHHHHHHHh---cCCccHhhHHHHHHHHHHHHH
Confidence            6665554444323 344432  2332222        1223344555555544321   112356677777666655554


Q ss_pred             HHHH
Q 012965          213 VIIL  216 (452)
Q Consensus       213 ~~~~  216 (452)
                      +...
T Consensus       427 ~~~~  430 (476)
T PLN00028        427 LPVA  430 (476)
T ss_pred             HHHH
Confidence            4443

>TIGR01272 gluP glucose/galactose transporter

Probab=98.57  E-value=3.6e-06  Score=77.50  Aligned_cols=126  Identities=13%  Similarity=0.100  Sum_probs=84.5

Q ss_pred             hcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHHhHhhhhhhh
Q 012965           66 TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSA  144 (452)
Q Consensus        66 ~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~  144 (452)
                      ++|+++.+.+..++.......++....+++.||+|+||.+..+..+..++. +....++...+ ..-++.|++.+..+|.
T Consensus       172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~  250 (310)
T TIGR01272       172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPT  250 (310)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHH
Confidence            368999999988888888777888899999999999999888877777654 33444443333 3556889999999999


Q ss_pred             hhhhhhhh-ccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHH
Q 012965          145 FESWLVAE-HNK-RGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAA  204 (452)
Q Consensus       145 ~~~~~i~e-~~~-r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~  204 (452)
                      ..+ ...+ ..+ .+...+    .    . ....+|..+.|.+.+.+.|..+  .+..+++.
T Consensus       251 ~~s-~a~~~~~~~~~~asa----i----~-~~~~~Gg~i~P~l~G~lad~~g--~~~a~~v~  300 (310)
T TIGR01272       251 IFS-LALNALGRHTSQGSG----I----L-CLAIVGGAIVPLLQGSLADCLG--IQLAFALP  300 (310)
T ss_pred             HHH-HHHhhhhhhhhhhHH----H----H-HHHHhcchHHHHHHHHHHHhcc--chHHHHHH
Confidence            766 4433 322 222211    1    1 2233667777777777776544  34555543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00901 2A0125 AmpG-related permease

Probab=98.57  E-value=9.3e-07  Score=83.47  Aligned_cols=96  Identities=18%  Similarity=0.153  Sum_probs=71.4

Q ss_pred             hhhHHHHHhhcCCCcchhHHHHHHHH-hhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhc-C----------cc
Q 012965           57 GPYVYYLYSTYGFGKGEIGQLFIAGF-GSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH-S----------PQ  123 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~~g~~~~~~~-~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~-~----------~~  123 (452)
                      ....|...+++|.++.+.+.+..... ....++.+++|++.||+|||+.+..+.++.+++. +..+ .          ++
T Consensus       229 ~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (356)
T TIGR00901       229 TVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPH  308 (356)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccch
Confidence            34445555679999999987766443 4455666789999999999999988888777654 2222 1          45


Q ss_pred             HHHHHHHHHHHHhHhhhhhhhhhhhhhhhc
Q 012965          124 YKILMIGRILGGIATSLLFSAFESWLVAEH  153 (452)
Q Consensus       124 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~  153 (452)
                      .+.+..+.++.+++.+...+...+ ++.|.
T Consensus       309 ~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~  337 (356)
T TIGR00901       309 LLMLFLTITLEAVTGGLGTVAFVA-FLSKL  337 (356)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHH-HHHHh
Confidence            677888899999999998888866 77766

>PRK10133 L-fucose transporter; Provisional

Probab=98.57  E-value=3.2e-06  Score=81.96  Aligned_cols=135  Identities=11%  Similarity=0.053  Sum_probs=87.2

Q ss_pred             hhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHHhHhhhhhh
Q 012965           65 STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFS  143 (452)
Q Consensus        65 ~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~  143 (452)
                      +++|.++.+.+..+....+...+++++.|++.||+|||+++..+..+.++.. +..+.++.+ -+..-.+.|++.+..+|
T Consensus       288 ~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~P  366 (438)
T PRK10133        288 EIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQYP  366 (438)
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHHH
Confidence            4689999999988888888778888899999999999999988877776654 334455543 24556789999999999


Q ss_pred             hhhhhhhhhc--ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHH
Q 012965          144 AFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIG  211 (452)
Q Consensus       144 ~~~~~~i~e~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~  211 (452)
                      ...+ ...|.  ++.+...+..    . .    ..+|..+++.+.+.+.+..+ +-+..|.+..+..+..
T Consensus       367 ~~~s-~a~~~~~~~~~~as~l~----~-~----~~~g~~~~~~i~G~l~~~~g-~~~~~~~v~~~~~~~~  425 (438)
T PRK10133        367 TIFS-LGIKNLGQDTKYGSSFI----V-M----TIIGGGIVTPVMGFVSDAAG-NIPTAELIPALCFAVI  425 (438)
T ss_pred             HHHH-HHHcccchhhccchhHH----h-H----HhccchHHHHHHHHHHHhcc-chHHHHHHHHHHHHHH
Confidence            9877 54443  2222322221    1 1    22344455555566555433 1345565544444433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.56  E-value=5.6e-06  Score=80.38  Aligned_cols=57  Identities=21%  Similarity=0.318  Sum_probs=43.5

Q ss_pred             hhhHHHHH-hhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHH
Q 012965           57 GPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYI  113 (452)
Q Consensus        57 ~p~l~~i~-~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~  113 (452)
                      ...+|... +++|.+..+.+.........+.+.+++.|+++||+|||+.+..+..+.+
T Consensus       263 ~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~  320 (432)
T PRK10406        263 TTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAA  320 (432)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence            34455554 5689998888877777677677888889999999999998877765543

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.56  E-value=6.3e-08  Score=89.61  Aligned_cols=97  Identities=14%  Similarity=0.238  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHH
Q 012965          284 GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEA  363 (452)
Q Consensus       284 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  363 (452)
                      |.+.....+..++.+++.|++.||++|++  ++..+..+-.++.+...+..+.               |.+.++-.+.|+
T Consensus        71 Gll~~vf~v~~~i~sPl~gyLadryNR~~--v~~vG~~iW~~Av~~~~fs~~F---------------wq~~l~R~~vGi  133 (493)
T KOG1330|consen   71 GLLQTVFIVVFMIASPLFGYLADRYNRKR--VIAVGIFIWTLAVFASGFSNHF---------------WQVLLCRGFVGI  133 (493)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhhcCcce--EEeeHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHhcc
Confidence            78888899999999999999999999998  3666666666666665555444               688889999999


Q ss_pred             HhhchhhHHHHHHhhcCCcccccchhhhhhhhhh
Q 012965          364 CVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLN  397 (452)
Q Consensus       364 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~  397 (452)
                      |.+...|+.+++++|.+|+++|++++++.++..+
T Consensus       134 GeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ip  167 (493)
T KOG1330|consen  134 GEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIP  167 (493)
T ss_pred             chhhhcccchhHhhhcCcchhhhHHHHHhhhhcc
Confidence            9999999999999999999999999999998643

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.56  E-value=1.3e-06  Score=82.57  Aligned_cols=134  Identities=10%  Similarity=0.060  Sum_probs=80.8

Q ss_pred             hhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCC
Q 012965          268 FLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKS  344 (452)
Q Consensus       268 ~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (452)
                      ....|.+.+ +++.+.   +...+...++..++++..|+++||+|||+   +....................        
T Consensus        11 ~~~lp~i~~-~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~---~~~~~~~~~~~~~~~~~~~~~--------   78 (368)
T TIGR00903        11 SPVLSLVAE-DIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRW---FLFGSLATFAAAAGRLLDPFN--------   78 (368)
T ss_pred             HhhHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH---HHHHHHHHHHHHHHHHHHhcc--------
Confidence            334444443 344443   67777778899999999999999999876   333332222222111111011        


Q ss_pred             CCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhhh------hHHHHHHHhccccCCchHHHHH
Q 012965          345 GGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPL------NIFVCVVLYNVDAFPITVMFGM  418 (452)
Q Consensus       345 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~------~~~~~~~l~~~~~~~~~~~~~~  418 (452)
                            ....++.-++.|++.+. .+.......|.+|+++|++++++.+...      +..++..+.+.  .++...+..
T Consensus        79 ------~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~--~gWr~~f~~  149 (368)
T TIGR00903        79 ------YEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA--GGLQLLIIP  149 (368)
T ss_pred             ------HHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cchHHHHHH
Confidence                  13567777788888875 4555666789999999999999877642      22444455544  344445544


Q ss_pred             HHHH
Q 012965          419 CSIF  422 (452)
Q Consensus       419 ~~~~  422 (452)
                      .++.
T Consensus       150 ~~~l  153 (368)
T TIGR00903       150 IAAV  153 (368)
T ss_pred             HHHH
Confidence            3333

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.53  E-value=6.4e-07  Score=71.69  Aligned_cols=90  Identities=11%  Similarity=0.119  Sum_probs=65.0

Q ss_pred             HHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhch
Q 012965          289 TFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIF  368 (452)
Q Consensus       289 ~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  368 (452)
                      ...++..++.++.+++.||+|||+.  +........+...........               +.......+.+++.+..
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~~~--~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~~~~~~   68 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRKPV--LLVGLFIFVLSTAMFALSSNI---------------TVLIIARFLQGFGAAFA   68 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchhHH--HHHHHHHHHHHHHHHHHhccH---------------HHHHHHHHHHHHHHHHH
Confidence            3457788899999999999998873  444443434333332221111               35566778888888888


Q ss_pred             hhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          369 WPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       369 ~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      .+..+.+..|..|+++|+++.+..+..
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (141)
T TIGR00880        69 LVAGAALIADIYPPEERGVALGLMSAG   95 (141)
T ss_pred             HHhHHHHHHHHCChhhhhHHHHHHHHh
Confidence            899999999999999999999887764

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.52  E-value=2.2e-06  Score=74.26  Aligned_cols=140  Identities=16%  Similarity=0.201  Sum_probs=87.7

Q ss_pred             HhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH--HHhcCccHHHHHHHHHHHHhHhhh-
Q 012965           64 YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC--ITKHSPQYKILMIGRILGGIATSL-  140 (452)
Q Consensus        64 ~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~--l~~~~~~~~~l~~~r~l~G~~~~~-  140 (452)
                      .+.+|+|+...+.+.+..+..+...+|+.|.++||+|++...+.+..+..+..  ...+  +.+.=+.+..+.|++... 
T Consensus       292 ~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysll  369 (459)
T KOG4686|consen  292 QKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLL  369 (459)
T ss_pred             HHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHH
Confidence            47899999999999999999999999999999999999998888877665532  2232  222223445566665443 


Q ss_pred             ---hhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccC-CCcchhhHH-HHHHHHHHHHHH
Q 012965          141 ---LFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS-LGPVAPFDA-AACFLAIGMVII  215 (452)
Q Consensus       141 ---~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~-~~~~~~f~~-~~~~~~~~~~~~  215 (452)
                         .+|.. +.++.| ++-|...+..+...+        +|..+.+++++.+.+..+ +.|.-.|.. .+.+.+....+.
T Consensus       370 AcslWP~v-a~~vpE-~qLGTaygf~qsIqN--------Lgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil  439 (459)
T KOG4686|consen  370 ACSLWPCV-ASLVPE-EQLGTAYGFIQSIQN--------LGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGIL  439 (459)
T ss_pred             HHHHhhhh-hhhCCH-HHhcchHHHHHHHHh--------hhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence               44444 324555 445555554444333        455556677777776554 556444443 344444433333

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.51  E-value=2e-06  Score=84.42  Aligned_cols=120  Identities=13%  Similarity=0.075  Sum_probs=74.4

Q ss_pred             hhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHh-----cCccHHHHHHHHHHHHhHh
Q 012965           65 STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK-----HSPQYKILMIGRILGGIAT  138 (452)
Q Consensus        65 ~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~-----~~~~~~~l~~~r~l~G~~~  138 (452)
                      +....+....+.+.....+...++.+++++++||+|+|+.+..+..+..++. ...     ..++.+.+++.-++.|++.
T Consensus       259 ~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~  338 (473)
T PRK10429        259 TYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGT  338 (473)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence            3333344555555555545566777889999999999999998887766543 221     1445677777788889988


Q ss_pred             hhhhhhhhhhhhhhc------ccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012965          139 SLLFSAFESWLVAEH------NKRGFEQQWLSITFSKAIFLGNGLVAILSGLF  185 (452)
Q Consensus       139 ~~~~~~~~~~~i~e~------~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l  185 (452)
                      +...+...+ +++|.      +...++.+......+...-++.++|+.+.+.+
T Consensus       339 ~~~~~~~~a-m~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~  390 (473)
T PRK10429        339 ALFWVLQVI-MVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV  390 (473)
T ss_pred             HHHHHHHHH-HHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888776644 65554      12223344444445555555555555544433

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.50  E-value=6.6e-06  Score=90.19  Aligned_cols=101  Identities=15%  Similarity=0.141  Sum_probs=78.3

Q ss_pred             HHHhhcCCCcc-hhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHHhHhh
Q 012965           62 YLYSTYGFGKG-EIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATS  139 (452)
Q Consensus        62 ~i~~~~g~s~~-~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~  139 (452)
                      ...+++|.+.. +.|++.+...++..+++++.|++.||+++|+.+.++.++.+++. +..+.++.+.+++..++.|++.+
T Consensus       258 ~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  337 (1146)
T PRK08633        258 YAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAG  337 (1146)
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            33467899988 88888877777777888899999999999999988888777765 55667788888889999999999


Q ss_pred             hhhhhhhhhhhhhc---ccccchhhHH
Q 012965          140 LLFSAFESWLVAEH---NKRGFEQQWL  163 (452)
Q Consensus       140 ~~~~~~~~~~i~e~---~~r~~~~~~~  163 (452)
                      ...+...+ ++.+.   +.|+...+..
T Consensus       338 ~~~~~~~~-~~~~~~p~~~rg~~~~~~  363 (1146)
T PRK08633        338 LFIVPLNA-LIQFRAPEKELGKVLAAN  363 (1146)
T ss_pred             HhhHHHHH-HHhhcCCccchhhhhHHH
Confidence            88777655 65554   4455555533

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.48  E-value=5e-06  Score=72.76  Aligned_cols=111  Identities=22%  Similarity=0.199  Sum_probs=81.9

Q ss_pred             hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HH--hc-----CccHHHHH
Q 012965           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT--KH-----SPQYKILM  128 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~--~~-----~~~~~~l~  128 (452)
                      +.+-|++.+.+|+|.+|...+....-++.. .+++.|.+.||+|+|.++.++.+...+|. ..  ..     ..++|.+.
T Consensus        22 s~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~-~G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~  100 (250)
T PF06813_consen   22 SAYSPQLKSRLGYSQSQLNTLSTAGDIGSY-FGILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMC  100 (250)
T ss_pred             hhhhHHHHHHhCCCHHHHHHHHHHHHHHhh-ccHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHH
Confidence            566678999999999999988877777555 47889999999999999999999888874 22  21     24778888


Q ss_pred             HHHHHHHhHhhhhhhhhhhhhhhhc-ccccchhhHHHHHHH
Q 012965          129 IGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFS  168 (452)
Q Consensus       129 ~~r~l~G~~~~~~~~~~~~~~i~e~-~~r~~~~~~~~~~~~  168 (452)
                      +..++.|.+.+....++...-+.+. ++||...+......+
T Consensus       101 ~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~G  141 (250)
T PF06813_consen  101 LFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFG  141 (250)
T ss_pred             HHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHH
Confidence            8888888876665454423234444 678887776655433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.45  E-value=3.3e-06  Score=83.68  Aligned_cols=101  Identities=7%  Similarity=0.012  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHH
Q 012965          284 GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEA  363 (452)
Q Consensus       284 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  363 (452)
                      +.+.+...++.+++.++.++++||+|||+.  +..+..+..+...........        .+ ....+..++.-++.|+
T Consensus        59 ~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~--~~~~~~~~~v~~~~~~~~~~~--------~~-~~~~~~~~~~r~l~G~  127 (502)
T TIGR00887        59 AAVNGSASIGTLAGQLFFGWLADKLGRKRV--YGMELIIMIIATVASGLSPGS--------SP-KSVMATLCFWRFWLGV  127 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccHHH--HHHHHHHHHHHHHHHHHccCc--------cc-chHHHHHHHHHHHHHH
Confidence            566777788999999999999999999983  444444444433332222111        00 0011356788889999


Q ss_pred             HhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          364 CVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       364 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      +.+...+....+..|.+|++.|+++.++.+..
T Consensus       128 ~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~  159 (502)
T TIGR00887       128 GIGGDYPLSAIITSEFATKKWRGAMMAAVFAM  159 (502)
T ss_pred             HHhhhhHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence            99999999999999999999999999887764

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.44  E-value=2.4e-05  Score=69.96  Aligned_cols=301  Identities=13%  Similarity=0.062  Sum_probs=163.6

Q ss_pred             hhcCCCcchhH----HHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHHhHhh
Q 012965           65 STYGFGKGEIG----QLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATS  139 (452)
Q Consensus        65 ~~~g~s~~~~g----~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~  139 (452)
                      .+.+++..|+.    -+-+-.++...+   +.=.+.|..--|++++.-.+...... +.-+.++.+.+=+.-++.|...+
T Consensus        34 p~~NlT~~~l~~evyPvwTYSYLv~Lv---pvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA  110 (433)
T KOG3810|consen   34 PDKNLTEDQLTNEVYPVWTYSYLVGLV---PVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA  110 (433)
T ss_pred             CCCCccHHHHhcccccchhHHHHHHHH---HHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH
Confidence            45667766654    122223332222   34456898888888887776666665 55889999999889999999887


Q ss_pred             hhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHH
Q 012965          140 LLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIIL  216 (452)
Q Consensus       140 ~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~  216 (452)
                      ....-- + ++-+.   ++..+..+.-+.    ....|...|..++..    +.....+.....=.+......+...+..
T Consensus       111 aEIAYy-s-YIYs~Vd~~~Yqrvt~y~Ra----A~L~g~~~g~vlaQl----Lvs~~~~sy~~LN~ISL~~~~ia~~~A~  180 (433)
T KOG3810|consen  111 AEIAYY-S-YIYSKVDPEMYKRVTGYCRA----AFLVGKFVGSVLAQL----LVSLETLSYTTLNYISLAEVTIAVLLAL  180 (433)
T ss_pred             HHHhhh-h-eeeeecCHHHHHHHHHHhHH----HHHHHhHHHhHHHHH----HhhhcccchhhhchhhHHHHHHHHHHHh
Confidence            774332 3 44333   333333332222    333344444444443    3332333333222333332223322222


Q ss_pred             hccccccC-------CCC-------cc--h----h----HHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhcc
Q 012965          217 SSWTENYG-------DPS-------ES--K----D----LLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTP  272 (452)
Q Consensus       217 ~~~~~~~~-------~~~-------~~--~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  272 (452)
                       .+|..++       +++       +.  +    +    ......++..+..++|+.+...+-..+...+ +..+.+|.-
T Consensus       181 -fLP~v~rSl~f~~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg-~~QV~nY~Q  258 (433)
T KOG3810|consen  181 -FLPRVKRSLYFHRLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCG-YYQVTNYTQ  258 (433)
T ss_pred             -hCCCCchhhhhhcccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhch-hHHHHHHHH
Confidence             3332221       000       00  0    0    0111223444556677776666555555544 333455544


Q ss_pred             ccccCCCCCch----HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcc
Q 012965          273 ALSPNDEEIPH----GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGIS  348 (452)
Q Consensus       273 ~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (452)
                      ..-++....+.    |..=+...+.++++.+..|.+--++.|+....+..+....+.......   ..        ++  
T Consensus       259 ~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~---~t--------~~--  325 (433)
T KOG3810|consen  259 ILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMA---QT--------QH--  325 (433)
T ss_pred             HHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhh---cc--------cc--
Confidence            43333221111    555566667788888999998777776654333333222222222211   11        11  


Q ss_pred             cchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          349 FSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       349 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                        .|...++..++...+....++....+++...++.-|..+|++.+.
T Consensus       326 --Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFv  370 (433)
T KOG3810|consen  326 --IWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFV  370 (433)
T ss_pred             --eehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHH
Confidence              257889999999999988888888888988999999999985543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.44  E-value=7.9e-06  Score=80.20  Aligned_cols=152  Identities=13%  Similarity=0.006  Sum_probs=84.1

Q ss_pred             hhHHHHH-hhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHH--------HHHHHHH--HHHHH-Hhc-CccH
Q 012965           58 PYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRAC--------VTYCLTY--ILSCI-TKH-SPQY  124 (452)
Q Consensus        58 p~l~~i~-~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l--------~~~~~~~--~i~~l-~~~-~~~~  124 (452)
                      ..+|... +++|.+..+.|...+..++.+.+++++.|+++||+++|+..        ..+....  ++..+ ... ..+.
T Consensus       282 ~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (465)
T TIGR00894       282 TYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAF  361 (465)
T ss_pred             HHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence            3445554 56899999999888888888888889999999998755321        1111111  11111 122 3344


Q ss_pred             HHHHHHHHHHHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCC-cchhhHH
Q 012965          125 KILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLG-PVAPFDA  203 (452)
Q Consensus       125 ~~l~~~r~l~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~-~~~~f~~  203 (452)
                      ...++.-.+.+.+.+...+.... ...|..++  ..+.    ..........+++.++|.+.+.+.+..+++ |+..|.+
T Consensus       362 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~--~~g~----~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~  434 (465)
T TIGR00894       362 YLTIIILTLANAVSSGPLAGVLI-NSLDLAPR--FLGF----IKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLI  434 (465)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhh-chhhcChh--HHHH----HHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHH
Confidence            44444444555444444333211 22232222  2222    222333344577788888877776644443 6777877


Q ss_pred             HHHHHHHHHHHHH
Q 012965          204 AACFLAIGMVIIL  216 (452)
Q Consensus       204 ~~~~~~~~~~~~~  216 (452)
                      .++..++..++..
T Consensus       435 ~~~~~~i~~i~~~  447 (465)
T TIGR00894       435 MAFVNILCVIFYL  447 (465)
T ss_pred             HHHHHHHHHHHee
Confidence            7766666554433

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.43  E-value=3.2e-06  Score=83.03  Aligned_cols=93  Identities=15%  Similarity=0.173  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHH
Q 012965          284 GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEA  363 (452)
Q Consensus       284 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  363 (452)
                      .++.....++..++.++.|+++|.+|||.  ..+.+..+..++.++.....+.               -..+.+..+.|+
T Consensus        81 ~w~~~~~~l~~av~~~~~G~LSDlfGRr~--~~i~g~~l~vvG~Iv~atA~~~---------------~~~iag~~l~Gv  143 (599)
T PF06609_consen   81 SWFSTAWTLASAVSFPFVGRLSDLFGRRY--FFIIGSLLGVVGSIVCATAQNM---------------NTFIAGMVLYGV  143 (599)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhcchH--HHHHHHHHHHhHHHHhhcCCcH---------------HHHHHHHHHHHH
Confidence            56667777889999999999999999998  3445555555555543322222               256788889898


Q ss_pred             HhhchhhHHHHHHhhcCCcccccchhhhhhh
Q 012965          364 CVGIFWPSIMKMRSQYIPEEARSTIMNFFRI  394 (452)
Q Consensus       364 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~  394 (452)
                      +.|... .....++|..|.+.|..+.++...
T Consensus       144 gaG~~~-~~~~~isEl~p~k~R~~~~~~~~~  173 (599)
T PF06609_consen  144 GAGVQE-LAALAISELVPNKWRGLGLAIASI  173 (599)
T ss_pred             hhHHHH-HHHHHHHHhcccchhhhHhHHHHH
Confidence            877544 456668999999999877765554

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.43  E-value=2.8e-06  Score=78.21  Aligned_cols=147  Identities=16%  Similarity=0.084  Sum_probs=99.7

Q ss_pred             hhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHHH-HhcCccHHHHHHHHHHHHhHhhhhhh
Q 012965           65 STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCI-TKHSPQYKILMIGRILGGIATSLLFS  143 (452)
Q Consensus        65 ~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~l-~~~~~~~~~l~~~r~l~G~~~~~~~~  143 (452)
                      +++|++..++..+.....+.+.+++.+.|++.||+|.|+++..+.++..+.++ .-+...-..+.++-.+.|.+.|....
T Consensus       281 ~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA  360 (438)
T COG2270         281 ADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQA  360 (438)
T ss_pred             HHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHH
Confidence            58999999998887777788889999999999999999999999999988663 34455556667777899999999999


Q ss_pred             hhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHhccc
Q 012965          144 AFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWT  220 (452)
Q Consensus       144 ~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  220 (452)
                      .+.+ +..+.   ++.++..+    .+++.--    .+..++|.+.+.+.+..+ .-|.-+....++..+...... +.|
T Consensus       361 ~SRS-y~~~lvp~~k~~~fFg----lyaltgr----a~S~~gp~lv~v~t~iTg-~~r~g~~~i~vll~iGl~~L~-~v~  429 (438)
T COG2270         361 SSRS-YLARLVPKGKEGRFFG----LYALTGR----AASFLGPFLVAVITQITG-SSRAGVLSIIVLLLIGLLLLL-RVK  429 (438)
T ss_pred             HHHH-HHHHhCCCccccceee----hhhhhhh----HHHHHHHHHHHHHHHHhc-chhhHHHHHHHHHHhhHhhEE-eec
Confidence            9988 76665   44444444    2333333    334455555554444333 235445544444444444333 444


Q ss_pred             cc
Q 012965          221 EN  222 (452)
Q Consensus       221 ~~  222 (452)
                      ++
T Consensus       430 ~~  431 (438)
T COG2270         430 VP  431 (438)
T ss_pred             CC
Confidence            43

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.43  E-value=7.9e-05  Score=69.62  Aligned_cols=302  Identities=17%  Similarity=0.117  Sum_probs=148.7

Q ss_pred             HHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc
Q 012965           75 GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH  153 (452)
Q Consensus        75 g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~  153 (452)
                      +.+...-.+.+.+.-..+.+..+|...+.-......+..++. +.++++|.+.=+++-.+.+++.|........ +.+-.
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~-lt~~y  140 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLS-LTHFY  140 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHH-HHHhc
Confidence            344444444555555567778888876555666666777776 5589999998889999999998887776645 54433


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHhcc--ccccCCC-----
Q 012965          154 NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSW--TENYGDP-----  226 (452)
Q Consensus       154 ~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~--~~~~~~~-----  226 (452)
                      +++. ..     .++.    |.+.++++|+..-..+.+ .++..|..+.....+.++.....+..+  |+.+.+.     
T Consensus       141 ~~~~-l~-----~wss----GTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~  209 (402)
T PF02487_consen  141 GKSS-LS-----AWSS----GTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESES  209 (402)
T ss_pred             Cccc-cc-----cccC----CcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCC
Confidence            3221 11     2332    344444444444333333 456556666665554433322222122  2211100     


Q ss_pred             -Ccchh-HHH----------HHHHhhH-HhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch----HHHHHH
Q 012965          227 -SESKD-LLT----------QFRGAAV-AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH----GFIFAT  289 (452)
Q Consensus       227 -~~~~~-~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~----~~~~~~  289 (452)
                       ++.++ ..+          +.+...+ +..+-++.+...+-....+..-|.......|...-.....+.    ......
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~~  289 (402)
T PF02487_consen  210 EDEAEDDLLESETSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQLL  289 (402)
T ss_pred             CCcccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHHH
Confidence             00000 000          0000111 111112222233333444444444333344443321112222    233344


Q ss_pred             HHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchh
Q 012965          290 FMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFW  369 (452)
Q Consensus       290 ~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  369 (452)
                      +.++..+++--...+  |+  |+...+.+.-.+-.+.++.-......            ...|...+..+.-|+.-|..+
T Consensus       290 YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fi------------psi~ivf~lif~eGLlGGa~Y  353 (402)
T PF02487_consen  290 YQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFI------------PSIWIVFVLIFYEGLLGGASY  353 (402)
T ss_pred             HHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHh------------hHHHHHHHHHHHHHHhhhHHH
Confidence            556655555332221  23  33212211111212222221111111            112456666777788888888


Q ss_pred             hHHHHHHhhcCCcccccchhhhhhhh--hhHHHHHHH
Q 012965          370 PSIMKMRSQYIPEEARSTIMNFFRIP--LNIFVCVVL  404 (452)
Q Consensus       370 ~~~~~~~~~~~p~~~r~~~~g~~~~~--~~~~~~~~l  404 (452)
                      ...+..+.|..|+++|--++|..+.+  .|+.+++.+
T Consensus       354 VNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll  390 (402)
T PF02487_consen  354 VNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLL  390 (402)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            88888889999999999988887765  555555544

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.42  E-value=5.8e-06  Score=79.44  Aligned_cols=113  Identities=12%  Similarity=0.099  Sum_probs=79.8

Q ss_pred             hhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCC
Q 012965          268 FLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKS  344 (452)
Q Consensus       268 ~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (452)
                      ....|.+ ++.++.+.   +...+...++..++++..+++.||+|||+.  +..+..+..++..........        
T Consensus        23 ~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~--~~~g~~l~~~g~~l~~~~~~~--------   91 (410)
T TIGR00885        23 NPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAG--ILLGLFLYALGAFLFWPAAEI--------   91 (410)
T ss_pred             HHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH--HHHHHHHHHHHHHHHHHHHhh--------
Confidence            3455555 44556554   677788889999999999999999999983  555555555554443222111        


Q ss_pred             CCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          345 GGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       345 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      ++    .+..++..++.|++.+...+..+.++.+..|+++|++..++.+..
T Consensus        92 ~~----~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (410)
T TIGR00885        92 MN----YTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSF  138 (410)
T ss_pred             cc----HHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHH
Confidence            00    135667778889999999999999999999999888887776553

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.40  E-value=5.1e-06  Score=75.21  Aligned_cols=105  Identities=19%  Similarity=0.133  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHH
Q 012965          284 GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEA  363 (452)
Q Consensus       284 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  363 (452)
                      |.+.+.+++...+.++.+|.++||+|||+.  +..+.....+...+.. ...+.              ..++++=++.|+
T Consensus        71 GflGSsF~ilQ~~sS~~~G~~SD~yGRkpv--ll~c~~~va~s~ll~~-~S~~F--------------~afv~aR~l~Gi  133 (451)
T KOG2615|consen   71 GFLGSSFSILQFISSPLWGCLSDRYGRKPV--LLACLIGVALSYLLWA-LSRNF--------------AAFVLARFLGGI  133 (451)
T ss_pred             hhHhhHHHHHHHHhhhhhhhhhhhhCchHH--HHHHHHHHHHHHHHHH-HHHHH--------------HHHHHHHHhhhh
Confidence            788889999999999999999999999983  4444444344333322 22220              133333455555


Q ss_pred             HhhchhhHHHHHHhhcCCcccccchhhhhhhh------hhHHHHHHHhc
Q 012965          364 CVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYN  406 (452)
Q Consensus       364 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~  406 (452)
                      .-+ ...+..++++|.+++++|+.+++..+.+      .|+.+|+.+..
T Consensus       134 ~kg-nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  134 FKG-NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             ccC-chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            555 4467889999999999999999887774      45577777655

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.38  E-value=8e-05  Score=75.05  Aligned_cols=154  Identities=14%  Similarity=0.216  Sum_probs=99.8

Q ss_pred             hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccc-cCcchHHHHHHHHHHHHH-HHhcCc--------cHHH
Q 012965           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCLTYILSC-ITKHSP--------QYKI  126 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr-~Grr~~l~~~~~~~~i~~-l~~~~~--------~~~~  126 (452)
                      ..+...+.+.+|.+.++...++........+.+.++|.++|+ +||++++..+.++..++. +.+++.        ....
T Consensus         8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~   87 (654)
T TIGR00926         8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL   87 (654)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence            344445667789888888777766666677777889999996 699999999999988875 444321        1234


Q ss_pred             HHHHHHHHHhHhhhhhhhhhhhhhhhc-cc--ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc-----CCCcc
Q 012965          127 LMIGRILGGIATSLLFSAFESWLVAEH-NK--RGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSF-----SLGPV  198 (452)
Q Consensus       127 l~~~r~l~G~~~~~~~~~~~~~~i~e~-~~--r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~-----~~~~~  198 (452)
                      .+++-.+..+|.|+.-|...+ ...|. ++  +.++.+.    ++..+.. ..+|..+++.+..++.+..     .++|.
T Consensus        88 ~l~gLaLia~G~GgiKp~vsa-f~gdqf~~~~~~~~~s~----F~~fY~~-iNiGSlis~~i~~~l~~~~~~fg~~~~~~  161 (654)
T TIGR00926        88 DLLGLALIALGTGGIKPCVSA-FGGDQFEERQLSLRSRF----FSFFYFA-INAGSLISTIITPILRGDVGCFGCQDCYP  161 (654)
T ss_pred             HHHHHHHHHhhccccccCchh-hhHhhcCccchhHHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHhhcccccCcchH
Confidence            567778888899998888756 77765 22  2233333    3333332 2355555555555544321     13577


Q ss_pred             hhhHHHHHHHHHHHHHHH
Q 012965          199 APFDAAACFLAIGMVIIL  216 (452)
Q Consensus       199 ~~f~~~~~~~~~~~~~~~  216 (452)
                      ..|.+.++..+++.+...
T Consensus       162 ~aF~i~~i~m~ia~lvf~  179 (654)
T TIGR00926       162 LAFGVPAILMILALIVFM  179 (654)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888888777776655544

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.37  E-value=1.6e-05  Score=76.23  Aligned_cols=162  Identities=18%  Similarity=0.136  Sum_probs=96.1

Q ss_pred             hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHh---c-CccH--H---H
Q 012965           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK---H-SPQY--K---I  126 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~---~-~~~~--~---~  126 (452)
                      .-+...+.++-|++..+..++......+..+...++..+.||+|||+.++.+..+..+.. ++.   + .+..  |   .
T Consensus       290 ~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~  369 (485)
T KOG0569|consen  290 FFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYL  369 (485)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            444457778899998877777666666666777789999999999999999998887753 321   1 1112  1   2


Q ss_pred             HHHHHHHHHhHhhhhhhhhhhh-hhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHH
Q 012965          127 LMIGRILGGIATSLLFSAFESW-LVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAA  205 (452)
Q Consensus       127 l~~~r~l~G~~~~~~~~~~~~~-~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~  205 (452)
                      .+++.++..++.+...... ++ +.+|.-+++.+....+.... ...+.+.+-...-+.+-..      +|- +.|....
T Consensus       370 ~i~~~~~~~~~f~~G~gpi-~~fi~aELf~~~~R~aa~s~~~~-~~w~~~fiv~~~fp~l~~~------~g~-~~filF~  440 (485)
T KOG0569|consen  370 CIAAIFLFIISFAIGPGPI-PWFIGAELFPQSARSAAQSVATA-VNWLSNFIVGFAFPPLQNV------IGP-YVFILFV  440 (485)
T ss_pred             HHHHHHHHHHhhhcCCCch-hHHHHHHhCCccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHH------hcc-hhhHHHH
Confidence            2344455555444432222 33 46777555555543333222 2222232222333333322      332 5566666


Q ss_pred             HHHHHHHHHHHhccccccCCCC
Q 012965          206 CFLAIGMVIILSSWTENYGDPS  227 (452)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~  227 (452)
                      +...+..+..++.+||+++++.
T Consensus       441 i~~~~~~i~~~~~lPETkgr~~  462 (485)
T KOG0569|consen  441 IPLAIFLIYLYRYLPETKGRTP  462 (485)
T ss_pred             HHHHHHHHHHHHhCcccCCCCH
Confidence            6667777777789999987654

>PRK11462 putative transporter; Provisional

Probab=98.37  E-value=4.3e-05  Score=74.62  Aligned_cols=112  Identities=8%  Similarity=-0.060  Sum_probs=61.5

Q ss_pred             hhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHH-HHHHhcC--ccHHHHHHHHHHHHhHhhhhhhhhhhhh
Q 012965           73 EIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL-SCITKHS--PQYKILMIGRILGGIATSLLFSAFESWL  149 (452)
Q Consensus        73 ~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i-~~l~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~~  149 (452)
                      ..+.+.....+.+.++.+++++++||+|+|+.+..+..+.++ +.+..+.  ++.+.+++.-++.|++.+...+...+ +
T Consensus       264 ~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~-m  342 (460)
T PRK11462        264 VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV-M  342 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            344444555555667777899999999999987765554444 2222222  22334445556677776665544333 4


Q ss_pred             hhhc------ccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012965          150 VAEH------NKRGFEQQWLSITFSKAIFLGNGLVAILSGLF  185 (452)
Q Consensus       150 i~e~------~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l  185 (452)
                      ++|.      +...++.+......+...-+|.++|..+++.+
T Consensus       343 ~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~i  384 (460)
T PRK11462        343 MSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWM  384 (460)
T ss_pred             HHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4433      22233334333344455555666666555444

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.36  E-value=1.6e-05  Score=75.43  Aligned_cols=114  Identities=17%  Similarity=0.170  Sum_probs=74.0

Q ss_pred             CCCcchhHHHHHHHHhhhhhc-cccccccccccCcchHHHHHHHHHHHHH-HHhc--CccHHHHHHHHHHHHhHhhhhhh
Q 012965           68 GFGKGEIGQLFIAGFGSSMLF-GTIVGSLADKQGRKRACVTYCLTYILSC-ITKH--SPQYKILMIGRILGGIATSLLFS  143 (452)
Q Consensus        68 g~s~~~~g~~~~~~~~~~~l~-~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~--~~~~~~l~~~r~l~G~~~~~~~~  143 (452)
                      |.+..+........ ..+.+. .+++.++.+|+|+|+++..+.++.+++. +.-+  .++.+.+++..++.+++.+...+
T Consensus       268 g~~~l~~~~~~~~~-~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~  346 (467)
T COG2211         268 GDPELFAYLLLLAS-GAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP  346 (467)
T ss_pred             CChHHHHHHHHHHH-HHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence            33333333343333 334444 5679999999999999999999998875 4333  45788889999999999998887


Q ss_pred             hhhhhhhhhc------ccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 012965          144 AFESWLVAEH------NKRGFEQQWLSITFSKAIFLGNGLVAILSG  183 (452)
Q Consensus       144 ~~~~~~i~e~------~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~  183 (452)
                      ..-+ +++|.      +...++.+...+.++...=+|.+++..+.+
T Consensus       347 l~wa-m~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g  391 (467)
T COG2211         347 LPWA-MVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPG  391 (467)
T ss_pred             ccHH-HhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            7645 54433      334445555555555555555555554433

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.35  E-value=4.1e-06  Score=76.25  Aligned_cols=125  Identities=18%  Similarity=0.164  Sum_probs=94.2

Q ss_pred             CchHHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHH
Q 012965          281 IPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCT  360 (452)
Q Consensus       281 ~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (452)
                      ...|.+++...+.+++.+++.|.+.||+|+|.  .+..+..+.....++..+....               +..+++-.+
T Consensus       106 ~~iG~LFaskA~~qllvnp~~G~l~~~iGy~i--pm~~Gl~vmf~sTilFafg~sy---------------~~l~vAR~L  168 (464)
T KOG3764|consen  106 TQIGLLFASKALVQLLVNPFFGNLIDRIGYKI--PMVAGLFVMFLSTILFAFGNSY---------------PMLFVARSL  168 (464)
T ss_pred             cchhHHHHHHHHHHHHhcccchhhHHHhcccc--HHHHHHHHHHHHHHHHHHcchh---------------HHHHHHHHH
Confidence            34489999999999999999999999999987  3666777766666665554444               477888889


Q ss_pred             HHHHhhchhhHHHHHHhhcCCccc-ccchhhhhhhh------hhHHHHHHHhccccCCchHHHHHHHHHHH
Q 012965          361 FEACVGIFWPSIMKMRSQYIPEEA-RSTIMNFFRIP------LNIFVCVVLYNVDAFPITVMFGMCSIFLL  424 (452)
Q Consensus       361 ~g~~~~~~~~~~~~~~~~~~p~~~-r~~~~g~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  424 (452)
                      .|++.+..+....++++|.+|++. |++++|+.-..      .++.+|+.+++..|..  .-|.+++++++
T Consensus       169 QgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~--aPFlVL~~v~L  237 (464)
T KOG3764|consen  169 QGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKS--APFLVLAIVLL  237 (464)
T ss_pred             hhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCc--CcHHHHHHHHH
Confidence            999999999999999999999887 79988775432      3456678888874443  33444444433

>TIGR00898 2A0119 cation transport protein

Probab=98.32  E-value=6e-06  Score=81.99  Aligned_cols=95  Identities=16%  Similarity=0.277  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHH
Q 012965          284 GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEA  363 (452)
Q Consensus       284 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  363 (452)
                      +...+...++.+++.++.|+++||+|||+  .+..+..+..+..+...+....               +...+..++.|+
T Consensus       130 ~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~--~~~~~~~~~~i~~~~~~~~~~~---------------~~~~~~r~l~G~  192 (505)
T TIGR00898       130 DLTQSCFFVGVLLGSFVFGYLSDRFGRKK--VLLLSTLVTAVSGVLTAFSPNY---------------TVFLVFRLLVGM  192 (505)
T ss_pred             HHHHHHHHHHHHHHHHhHHHhhhhccchH--HHHHHHHHHHHHHHHHHHcccH---------------HHHHHHHHHHHh
Confidence            67778888999999999999999999998  3444444444444443332222               466777888999


Q ss_pred             HhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          364 CVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       364 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      +.+...+...+++.|.+|+++|+.+.++.+..
T Consensus       193 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~  224 (505)
T TIGR00898       193 GIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVF  224 (505)
T ss_pred             hccchHHHHHHHhheecChhhhHHHHHHHHHH
Confidence            99988999999999999999999988876543

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.31  E-value=2.8e-05  Score=85.13  Aligned_cols=105  Identities=10%  Similarity=-0.112  Sum_probs=75.8

Q ss_pred             HHHHH-hhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcC----------------
Q 012965           60 VYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS----------------  121 (452)
Q Consensus        60 l~~i~-~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~----------------  121 (452)
                      +|... +.+|.++.+.|.+.+...++..+++++.|+++||.++++.+..+.++.++.. ...+.                
T Consensus       248 ~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  327 (1140)
T PRK06814        248 LPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILV  327 (1140)
T ss_pred             hHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhh
Confidence            34444 5689999999988888878778888899999998888777666665555432 23322                


Q ss_pred             ----ccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHH
Q 012965          122 ----PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSI  165 (452)
Q Consensus       122 ----~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~  165 (452)
                          ++.+.+.+..++.|++.+...+...+ ++.+.   +.+++..+..+.
T Consensus       328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~p~~~~G~v~g~~~~  377 (1140)
T PRK06814        328 FLSKRHGWRILIDLFGLAAAGGLYIVPLFA-ALQAWANPAHRARVIAANNV  377 (1140)
T ss_pred             hhcccccHHHHHHHHHHHHHHHHhHHHHHH-HHHhhCCcccceeeeHHHHH
Confidence                67788888899999999988877655 65554   566776664443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.30  E-value=2.6e-06  Score=86.07  Aligned_cols=125  Identities=10%  Similarity=0.061  Sum_probs=84.3

Q ss_pred             hhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCc--
Q 012965          268 FLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNV--  342 (452)
Q Consensus       268 ~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  342 (452)
                      ...++.+ ++.++.+.   |.+.+.+.++..++.++.+++.||.|||+  ++..+.++.+++.++.........++..  
T Consensus        53 ~~~l~~i-ek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~--~i~~g~ll~~lg~ll~alphf~~~~y~~~~  129 (633)
T TIGR00805        53 NSSLTTI-ERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPI--VIGIGCAIMGLGSFLLSLPHFLSGRYSYST  129 (633)
T ss_pred             Hhhchhh-hhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcce--EEEecHHHHHHHHHHHhChHHhcCCccccc
Confidence            3344443 34455543   77788888999999999999999999888  3666666666665554332211100000  


Q ss_pred             -----------------------------C-----CCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccch
Q 012965          343 -----------------------------K-----SGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTI  388 (452)
Q Consensus       343 -----------------------------~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~  388 (452)
                                                   +     +.+.......++++-++.|++.+..++...+++.|.+|+++|+..
T Consensus       130 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~  209 (633)
T TIGR00805       130 TVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLY  209 (633)
T ss_pred             cccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHH
Confidence                                         0     000011224566789999999999999999999999999999999


Q ss_pred             hhhhhhh
Q 012965          389 MNFFRIP  395 (452)
Q Consensus       389 ~g~~~~~  395 (452)
                      .|+.+..
T Consensus       210 ~~i~~~~  216 (633)
T TIGR00805       210 IGILESI  216 (633)
T ss_pred             HHHHHHH
Confidence            9887764

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.25  E-value=2.9e-05  Score=73.70  Aligned_cols=104  Identities=7%  Similarity=-0.068  Sum_probs=80.6

Q ss_pred             cccCCCCCch----HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCccc
Q 012965          274 LSPNDEEIPH----GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISF  349 (452)
Q Consensus       274 ~~~~~~~~~~----~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (452)
                      ++.+.++.+.    |.+......+..+..+++|+++||+|.|+  .+....+.-++...+..+....             
T Consensus        51 ~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~--vL~l~~l~Wsl~t~L~~fa~Sl-------------  115 (511)
T TIGR00806        51 YLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKP--VLVLQALSFVCVWLLLLLGTSV-------------  115 (511)
T ss_pred             HHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchH--HHHHHHHHHHHHHHHHHHHHHH-------------
Confidence            3333455543    67788888999999999999999999888  3555555555555555544333             


Q ss_pred             chhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          350 SGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       350 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                        ..+.+.-+++|++.+..+ ....++.+.+|+++|+++.|+.+.+
T Consensus       116 --~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg  158 (511)
T TIGR00806       116 --WHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAA  158 (511)
T ss_pred             --HHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHH
Confidence              467788899999999888 8999999999999999999998875

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00788 fbt folate/biopterin transporter

Probab=98.25  E-value=1.6e-05  Score=77.66  Aligned_cols=93  Identities=16%  Similarity=0.046  Sum_probs=69.7

Q ss_pred             hhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHh-c---------CccHHHHHHHHHH
Q 012965           65 STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK-H---------SPQYKILMIGRIL  133 (452)
Q Consensus        65 ~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~-~---------~~~~~~l~~~r~l  133 (452)
                      +++|.++.++|.+.....+...++....+++.+|++.|+++..+.++.+++. ... .         .++.+.+...-++
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            5789999999988887777777777889999999999999999999988864 221 1         1444455666788


Q ss_pred             HHhHhhhhhhhhhhhhhhhcccccc
Q 012965          134 GGIATSLLFSAFESWLVAEHNKRGF  158 (452)
Q Consensus       134 ~G~~~~~~~~~~~~~~i~e~~~r~~  158 (452)
                      .+++.+........ ++.+..+++.
T Consensus       361 ~~~~~g~~~~~~~~-~~~~~~p~~~  384 (468)
T TIGR00788       361 AEVLAQLKFMPFLV-LLARLCPSGC  384 (468)
T ss_pred             HHHHHHHHHccHHH-HHHHhCCCCc
Confidence            88888887777645 6666633333

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.24  E-value=0.00011  Score=66.51  Aligned_cols=156  Identities=15%  Similarity=0.067  Sum_probs=99.0

Q ss_pred             HhhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhcccccccccccc-CcchHHHHHHHHHHHHH-HHhcCccHHHHH
Q 012965           51 AGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCLTYILSC-ITKHSPQYKILM  128 (452)
Q Consensus        51 ~~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~-Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~  128 (452)
                      ...+....-+|.+..|-|+|..+.|++.+...+.+...+.....+++|. ++|+..+....++.++. -+.+.+.-..+.
T Consensus       222 ~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~l  301 (395)
T COG2807         222 LLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPIL  301 (395)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            3344446677899999999999999888888877777777788888864 56777776666666664 334544333333


Q ss_pred             HHHHHHHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHH
Q 012965          129 IGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFL  208 (452)
Q Consensus       129 ~~r~l~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~  208 (452)
                      . -++.|+|.|..++.+.. ++.+..+..+..+..   ......+|+.+ ...+|.+.+++-|..+ +|+.+........
T Consensus       302 w-~~llG~G~G~~F~laL~-li~~rs~~a~~Aa~L---SgmaQg~GYll-Aa~GP~l~G~lhDa~g-sw~~~~~~l~~~~  374 (395)
T COG2807         302 W-ALLLGLGQGGAFPLALT-LILLRSSDAAIAAAL---SGMAQGVGYLL-AAFGPWLFGFLHDATG-SWSAPLVLLALAT  374 (395)
T ss_pred             H-HHHHhCccchHHHHHHH-HHHhhcCChHHHHHH---HHHhhhhhHHH-HhhhhhhHhHHHHhcC-ChHHHHHHHHHHH
Confidence            2 48999999999999866 666653333333322   22233344433 2566677777766443 4565555544444


Q ss_pred             HHHHH
Q 012965          209 AIGMV  213 (452)
Q Consensus       209 ~~~~~  213 (452)
                      +...+
T Consensus       375 i~m~i  379 (395)
T COG2807         375 LLMLI  379 (395)
T ss_pred             HHHHH
Confidence            44333

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.23  E-value=7.7e-05  Score=68.28  Aligned_cols=102  Identities=25%  Similarity=0.333  Sum_probs=75.4

Q ss_pred             hhhhhhHHHHHhhcCCCc--chhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCcc--HHHHH
Q 012965           54 WLQGPYVYYLYSTYGFGK--GEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQ--YKILM  128 (452)
Q Consensus        54 ~~~~p~l~~i~~~~g~s~--~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~--~~~l~  128 (452)
                      ....+..+...++++.+.  .+.+...........+..++.|.++||+|||+.+..+.....++. ++++.++  .+.++
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (338)
T COG0477          19 GLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLL   98 (338)
T ss_pred             chHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence            333556666777777665  367777677666666666889999999999988888877655543 4455554  89999


Q ss_pred             HHHHHHHhHhhhhhhhhhhhhhhhcccc
Q 012965          129 IGRILGGIATSLLFSAFESWLVAEHNKR  156 (452)
Q Consensus       129 ~~r~l~G~~~~~~~~~~~~~~i~e~~~r  156 (452)
                      +.|+.+|++.+...+...+ ++.|..++
T Consensus        99 ~~~~~~g~~~~~~~~~~~~-~~~~~~~~  125 (338)
T COG0477          99 ILRLLQGLGGGGLLPVASA-LLSEWFPE  125 (338)
T ss_pred             HHHHHHHhhhHHHHHHHHH-HHHHhcCc
Confidence            9999999999988888756 77777443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.21  E-value=1.5e-05  Score=75.18  Aligned_cols=175  Identities=14%  Similarity=0.154  Sum_probs=107.3

Q ss_pred             hhcchhHHHHHHHHHhhhchhhhhhhhhccccc----cCCCCCchHHHH---HHHHHHHHHHhHHHHHHhccC-CCCchh
Q 012965          243 IASDEKIALLGAIQSLFEGSMYTFVFLWTPALS----PNDEEIPHGFIF---ATFMLASMLGSSLASRLMARS-PPRVES  314 (452)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~~~~~---~~~~i~~~~~~~~~g~l~dr~-g~~~~~  314 (452)
                      .+++||-+...+..=+..-..|+.+...+-.|+    .++.+.+++...   ..+..-.-+..+++||++||+ |+|++ 
T Consensus        16 ~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t-   94 (498)
T COG3104          16 FFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT-   94 (498)
T ss_pred             cCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH-
Confidence            355666555555444443222322333333333    334557664333   344444556778999999995 77773 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCccc--ccchhhhh
Q 012965          315 YMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEA--RSTIMNFF  392 (452)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~--r~~~~g~~  392 (452)
                       +..+.++..++.+.+.... ...+            ..+.+++.+.++|.|..-|...++..|.+|++.  |-.++++.
T Consensus        95 -I~lGail~~iGh~~L~~~~-~~~~------------~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~f  160 (498)
T COG3104          95 -IVLGAILMAIGHLVLAISS-VSGP------------GGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLF  160 (498)
T ss_pred             -HHHHHHHHHHHHHHHhccc-cccc------------cHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEE
Confidence             6677777777666655432 0011            267888888889999999999999999998876  45555555


Q ss_pred             hhhh------hHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHhhh
Q 012965          393 RIPL------NIFVCVVLYNVDAFPITVMFGMCSIFLLVASVLQRRLM  434 (452)
Q Consensus       393 ~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (452)
                      .++.      ++.+.+++.+.  +++...|..+++-.....+.....+
T Consensus       161 Y~~iNiGsl~~p~i~~~~~~~--~g~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         161 YMGINIGSLIAPIITGLLAIN--YGWHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             EEEeehHHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHHHHHcc
Confidence            5543      33444555554  5577777777777766665554443

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.19  E-value=3.6e-06  Score=59.02  Aligned_cols=67  Identities=22%  Similarity=0.224  Sum_probs=56.1

Q ss_pred             HHHHHHhhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHH
Q 012965           46 YSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTY  112 (452)
Q Consensus        46 ~~~~~~~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~  112 (452)
                      +++...+.+...|+++...++.|+|+.|+|.+.++......+..|++|.++||+++++..+....+.
T Consensus         9 yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    9 YFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            3444445556689998888999999999999999999999999999999999999999887766543

>PTZ00207 hypothetical protein; Provisional

Probab=98.08  E-value=4.1e-05  Score=75.76  Aligned_cols=116  Identities=13%  Similarity=-0.050  Sum_probs=71.5

Q ss_pred             hhhccccccCCCCCchHHHHHHHHH--HHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCC
Q 012965          268 FLWTPALSPNDEEIPHGFIFATFML--ASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSG  345 (452)
Q Consensus       268 ~~~~p~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (452)
                      ..+.|.+ ++.++.+...+..+..+  ......++.|++.||+|+|+  .+.++.....++.....+....         
T Consensus        47 sv~s~~L-~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~--vllig~ll~~iG~ll~ala~~~---------  114 (591)
T PTZ00207         47 NLISGAM-QARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRP--IFVLSMTVFCLGTLLFALTFQE---------  114 (591)
T ss_pred             HHHHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH--HHHHHHHHHHHHHHHHHHHhcc---------
Confidence            4445543 44566666433322222  22335567899999999988  3556666666655554432111         


Q ss_pred             CcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhhh
Q 012965          346 GISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPL  396 (452)
Q Consensus       346 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~  396 (452)
                      ......+.+.+..++.|++.+..++.....+.+.+| ++||++.|+.....
T Consensus       115 ~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~  164 (591)
T PTZ00207        115 VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFT  164 (591)
T ss_pred             cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHH
Confidence            001112455667778888888777778888899997 56899998877653

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.04  E-value=8.1e-05  Score=72.89  Aligned_cols=149  Identities=17%  Similarity=0.115  Sum_probs=106.2

Q ss_pred             hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccC--cchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHH
Q 012965           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQG--RKRACVTYCLTYILSC-ITKHSPQYKILMIGRIL  133 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~G--rr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l  133 (452)
                      .-++|...++.+.+..+...+.+...+...++.+..|+++|+..  ++.+..++.+..+++. .+.+.++++.+...-.+
T Consensus       318 ~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~  397 (509)
T KOG2504|consen  318 FVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSIL  397 (509)
T ss_pred             HHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            44556777899999999998888888888899999999999988  3445555555556665 66999999999999999


Q ss_pred             HHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHH
Q 012965          134 GGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM  212 (452)
Q Consensus       134 ~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~  212 (452)
                      .|+..|...... +..+.|.-.-.+...    .++ ...+..+++.+++|++++.+.+..+ .|...|+..++..++..
T Consensus       398 fG~~~g~~~~l~-~~i~~~~~g~~~l~~----a~G-l~l~~~gi~~l~gpPiag~~~d~tg-~Y~~~f~~~g~~~~~s~  469 (509)
T KOG2504|consen  398 FGFCVGSFSSLT-PVILVDLVGLEKLSN----AYG-LLLLFQGIGALVGPPIAGLLYDITG-NYDHAFYFCGLCFLLSA  469 (509)
T ss_pred             HHHHHHHHHHHH-HHHHHHHcChhhcch----HHH-HHHHHhHHHHHcCcccceeeeeccC-CeeeehhhcChHHHHHH
Confidence            999999887665 325566522222222    222 2333466788888899888776544 25567777666655554

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.00  E-value=8.8e-05  Score=71.80  Aligned_cols=129  Identities=13%  Similarity=0.162  Sum_probs=72.3

Q ss_pred             hhhhhhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhc----cCCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 012965          264 YTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMA----RSPPRVESYMQIVFVVSSVSLLLPIVTSFL  336 (452)
Q Consensus       264 ~~~~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~d----r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (452)
                      +.....+.+.|++ ..+.+.   +.++....+..++.+++.|+++|    |+|||+. .+..+.....+.+..+.+....
T Consensus        20 ~~l~~~~l~~yl~-~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp-~il~g~~~~~~~l~ll~~~~~~   97 (477)
T TIGR01301        20 WALQLSLLTPYVQ-ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRP-FIAAGAALVAFAVILIGFAADI   97 (477)
T ss_pred             HHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHH-HHHHHHHHHHHHHHHHHhCchh
Confidence            3334555555654 345544   56666777889999999999999    5999983 2222233333333332221111


Q ss_pred             cC--CCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccc--cchhhhhhh
Q 012965          337 VA--PSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEAR--STIMNFFRI  394 (452)
Q Consensus       337 ~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r--~~~~g~~~~  394 (452)
                      ..  .++.++.......+..+++..+..++.+...+...+++.|.+|+++|  +.+.+..+.
T Consensus        98 ~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~  159 (477)
T TIGR01301        98 GHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSF  159 (477)
T ss_pred             hhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH
Confidence            00  00000001111112445555566678887888889999999998865  456665444

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.98  E-value=6.2e-05  Score=74.77  Aligned_cols=95  Identities=18%  Similarity=0.214  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHH
Q 012965          284 GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEA  363 (452)
Q Consensus       284 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  363 (452)
                      +++.+...+++.++.++.|+++|++|||+.  +..+.....++.++.....+.               ....++-++.|+
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~--l~~~~~~~~iG~ii~~~a~~~---------------~~l~~GR~l~G~  154 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRKKT--LLLAVVLFLIGAIIIALAPSW---------------YQLIVGRILTGL  154 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHhhhH---------------HHHHHHHHHhcc
Confidence            677888889999999999999999999983  666666666666665544433               478889999999


Q ss_pred             HhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          364 CVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       364 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      +.|........+.+|..|++.||...+..+..
T Consensus       155 g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~  186 (513)
T KOG0254|consen  155 GVGGASVLAPVYISEIAPAHIRGTLVSLYQLF  186 (513)
T ss_pred             chhhhhhcchhhHhhcCChhhhHHHHHHHHHH
Confidence            99999999999999999999999998887765

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.94  E-value=0.0012  Score=61.26  Aligned_cols=170  Identities=21%  Similarity=0.264  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHH-hhcCCCcchhHHHHHHHHhhhhhcc-cccccccc-ccCcchHHHHHHHHHHHHH-
Q 012965           41 NYLLVYSLMMAGDWLQGPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFG-TIVGSLAD-KQGRKRACVTYCLTYILSC-  116 (452)
Q Consensus        41 ~~~~~~~~~~~~~~~~~p~l~~i~-~~~g~s~~~~g~~~~~~~~~~~l~~-~~~G~l~D-r~Grr~~l~~~~~~~~i~~-  116 (452)
                      +++...++..++..++-+++.+.- +-+|+|..|...+....-. +.+.+ ...|++.. |.++|+.-..++...+++. 
T Consensus       212 ~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~-G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~  290 (403)
T PF03209_consen  212 RFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGG-GTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFA  290 (403)
T ss_pred             HHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Confidence            456666777778888866664444 6799998887655443333 33333 34666555 7788888888888887753 


Q ss_pred             H---HhcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 012965          117 I---TKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLV  190 (452)
Q Consensus       117 l---~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~  190 (452)
                      +   .+..++.+.+...-++.|++.|.....+.+ .+-+.   ++.+.+.+    .+......+.++|..+++.+-+...
T Consensus       291 lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals-~mM~lt~~~~aG~~mG----~WGaaQA~A~Glg~~~GG~~~D~~~  365 (403)
T PF03209_consen  291 LIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALS-LMMDLTSAGRAGLFMG----AWGAAQAIARGLGTFLGGALRDLVR  365 (403)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHH-HHHhCCCCcchhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2   366788999999999999999999887766 43333   45555555    4555555555555555554433222


Q ss_pred             ---c-ccCCCcchhhHHHHHHHHHHHHHHH
Q 012965          191 ---D-SFSLGPVAPFDAAACFLAIGMVIIL  216 (452)
Q Consensus       191 ---~-~~~~~~~~~f~~~~~~~~~~~~~~~  216 (452)
                         + ....++...|.+-++..+++.++..
T Consensus       366 ~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~  395 (403)
T PF03209_consen  366 ALFGNSPALAYGVVFALEAVLLLAALVLLG  395 (403)
T ss_pred             HhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence               1 1223445666666666666555543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.89  E-value=0.00017  Score=69.74  Aligned_cols=125  Identities=21%  Similarity=0.310  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHH
Q 012965          284 GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEA  363 (452)
Q Consensus       284 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  363 (452)
                      +.+++....+.+++.+..+++.||+|.|+  ++..+..+.++..++........             .+.+++.-++.|+
T Consensus        76 ~~i~ss~~~G~i~~~iP~g~l~~k~G~r~--v~~~~~~~sa~~t~l~P~aa~~~-------------~~~~~~~R~lqGl  140 (466)
T KOG2532|consen   76 GLIFSSFFWGYILGQIPGGYLADKFGARR--VFFISGLISALLTLLTPLAASIG-------------FYLLLVLRFLQGL  140 (466)
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHcCchH--HHHHHHHHHHHHHHHHHHHHHhc-------------chhhHHHHHHhHH
Confidence            78899999999999999999999999988  35555555555544433333221             1255778889999


Q ss_pred             HhhchhhHHHHHHhhcCCcccccchhhhhhhh------hhHHHHHHHhcc-ccCCc-hHHHHHHHHHH
Q 012965          364 CVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNV-DAFPI-TVMFGMCSIFL  423 (452)
Q Consensus       364 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~-~~~~~-~~~~~~~~~~~  423 (452)
                      +.+..+|....+..+..|+++|++..++....      .+..+++.+-+. .||+. .+.+...++..
T Consensus       141 ~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~  208 (466)
T KOG2532|consen  141 GQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIW  208 (466)
T ss_pred             HHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHH
Confidence            99999999999999999999999887765543      233455666554 45544 33333333333

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.85  E-value=5.9e-05  Score=71.57  Aligned_cols=155  Identities=18%  Similarity=0.151  Sum_probs=107.5

Q ss_pred             HHhhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHH
Q 012965           50 MAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILM  128 (452)
Q Consensus        50 ~~~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~  128 (452)
                      .++.++...++.--.+|++-.+...|-........-.+.=++.+++.+|+|+-+++..++.+.++=. ..+..+|.|..+
T Consensus       384 G~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vL  463 (618)
T KOG3762|consen  384 GAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVL  463 (618)
T ss_pred             HHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchhee
Confidence            3344444445544458888777777744444444333444568899999999999999999998865 668999999999


Q ss_pred             HHHHHHHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHH
Q 012965          129 IGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFL  208 (452)
Q Consensus       129 ~~r~l~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~  208 (452)
                      ..-+++|+..+..+.+..+ |++...+++.....+......-..+|-++|.    ++++.+.+.  ++-|..|...++.+
T Consensus       464 Pieilqgit~aliWaa~~s-Y~s~vaPp~l~at~Q~l~~g~f~GlG~g~Gs----lIGG~~v~~--fg~~ttf~~~giAc  536 (618)
T KOG3762|consen  464 PIEILQGITHALIWAAIIS-YASHVAPPGLRATAQGLLQGIFHGLGKGLGS----LIGGFVVER--FGARTTFRIFGIAC  536 (618)
T ss_pred             eHHHHHHHHHHHHHHHHHH-HHHhhCCCcchHHHHHHHHHHhcccCcchhh----hhhhhhhee--ehhHHHHHHHHHHH
Confidence            9999999999999999866 8888877777766555555544455555555    555555543  34456666555544


Q ss_pred             HHH
Q 012965          209 AIG  211 (452)
Q Consensus       209 ~~~  211 (452)
                      ++.
T Consensus       537 l~~  539 (618)
T KOG3762|consen  537 LVT  539 (618)
T ss_pred             HHH
Confidence            443

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.82  E-value=3e-05  Score=54.79  Aligned_cols=76  Identities=13%  Similarity=0.129  Sum_probs=64.3

Q ss_pred             hhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHH
Q 012965           53 DWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILM  128 (452)
Q Consensus        53 ~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~  128 (452)
                      -+...|.+|.+.+|.++|.++.|++.+..+++..++++...++.++..+++.+..+.+...+.. .+++.++.+.+.
T Consensus         8 RFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~   84 (85)
T PF06779_consen    8 RFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS   84 (85)
T ss_pred             HHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence            3344899999999999999999999999998777888888999999888888999998888876 778888876543

Note that many members are hypothetical proteins.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.81  E-value=0.0055  Score=59.21  Aligned_cols=55  Identities=11%  Similarity=-0.130  Sum_probs=39.2

Q ss_pred             HHHHhhcCCC-----cchhHHHHHHHHhhhhhc-cccccccccccCcchHHHHHHHHHHHH
Q 012965           61 YYLYSTYGFG-----KGEIGQLFIAGFGSSMLF-GTIVGSLADKQGRKRACVTYCLTYILS  115 (452)
Q Consensus        61 ~~i~~~~g~s-----~~~~g~~~~~~~~~~~l~-~~~~G~l~Dr~Grr~~l~~~~~~~~i~  115 (452)
                      -++.|.+.++     ..++.++.+...+...+. .++.+++++|++|++.+-.....+...
T Consensus        27 R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~   87 (472)
T TIGR00769        27 RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGF   87 (472)
T ss_pred             HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHH
Confidence            4556666663     245667777666655554 678999999999999988877666554

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.79  E-value=0.00017  Score=71.94  Aligned_cols=91  Identities=10%  Similarity=0.036  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHH
Q 012965          284 GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEA  363 (452)
Q Consensus       284 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  363 (452)
                      ....++..++.++|.++.|.++||+|||+  .+..+..+..+..+...+..+.               +...+.-++.|+
T Consensus       121 ~~~~s~~~~G~~vG~~i~g~lsD~~GRk~--~~~~~~~~~~i~~~~~a~a~~~---------------~~~~~~Rfl~G~  183 (521)
T KOG0255|consen  121 ALGQSLFFLGVLVGSLIFGPLSDRFGRKP--VLLVSLLLFIIFGILTAFAPNY---------------WMFLIFRFLSGF  183 (521)
T ss_pred             HHHHHHHHHHHHHHHhhheehHhhcccHH--HHHHHHHHHHHHHHHHHHhCcH---------------HHHHHHHHHHHh
Confidence            45667778999999999999999999998  3555555555544444433333               477888899999


Q ss_pred             HhhchhhHHHHHHhhcCCcccccchhhh
Q 012965          364 CVGIFWPSIMKMRSQYIPEEARSTIMNF  391 (452)
Q Consensus       364 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~  391 (452)
                      +.+......+.+..|.++++.|+.+..+
T Consensus       184 ~~~~~~~~~~~~~~E~~~~~~R~~~~~~  211 (521)
T KOG0255|consen  184 FGSGPLTVGFGLVAEIVSPKQRGLALTL  211 (521)
T ss_pred             hccchhHHhHhhheeecCcchhhHHHHH
Confidence            9999999999999999999999999887

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.72  E-value=0.00074  Score=54.60  Aligned_cols=74  Identities=20%  Similarity=0.217  Sum_probs=60.3

Q ss_pred             HHHHhhhhhccccccccccccCcchHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc
Q 012965           79 IAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH  153 (452)
Q Consensus        79 ~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~  153 (452)
                      ++.+....+..++.+.+.+++|.|+.++++.+.+.+-.+.-+-++.+.++.+-.+.|++.+..+.+... ++.+.
T Consensus        44 ai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~-ylt~~  117 (156)
T PF05978_consen   44 AILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGT-YLTSY  117 (156)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhH-HHHHc
Confidence            344444456666788899999999999999999987665566788999999999999999999988755 77776

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.70  E-value=0.021  Score=52.45  Aligned_cols=325  Identities=12%  Similarity=0.036  Sum_probs=140.5

Q ss_pred             hHHHHHhhcCCCcchhHHHHHHHHhhhhhcccccccccc-----ccCcchHHHH------HHHHHHHHH-H---H---hc
Q 012965           59 YVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLAD-----KQGRKRACVT------YCLTYILSC-I---T---KH  120 (452)
Q Consensus        59 ~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~D-----r~Grr~~l~~------~~~~~~i~~-l---~---~~  120 (452)
                      .+|.+.+.-|.|.++.+.. +..+-.. ..-.++.++.|     |+||||..+.      +.++..++. .   .   +-
T Consensus        52 ~iP~lL~ak~vSyt~~a~f-S~ay~P~-sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~  129 (510)
T KOG3574|consen   52 AIPLLLQAKGVSYTSQAIF-SFAYWPF-SLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGG  129 (510)
T ss_pred             hhHHHhcCCCcchhhhhhh-hhhhhHH-HHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCC
Confidence            5677778788888887643 2222211 11235888888     9999986543      333333332 1   1   12


Q ss_pred             CccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc--ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhcc--cCC
Q 012965          121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGN-LLVDS--FSL  195 (452)
Q Consensus       121 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~-~l~~~--~~~  195 (452)
                      .++...+...-++.-+..+..-.+...|-+.-.  ++-+....    ..+.+...|+.+|..+--.+-. ...+.  .+|
T Consensus       130 ~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST----~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~  205 (510)
T KOG3574|consen  130 LPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYAST----CQSVGQTAGYFLGNVVFLALESPDFCNTYLRSI  205 (510)
T ss_pred             CcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhH----HHHHHHhhhHHhhcceeeEecChhhhhHHHhcC
Confidence            344444544556666666666666655443322  44444333    4444444444444332111100 00000  011


Q ss_pred             C----c---chhhHHHHHHHHHHHHHHHhccccccCC-CCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhh
Q 012965          196 G----P---VAPFDAAACFLAIGMVIILSSWTENYGD-PSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFV  267 (452)
Q Consensus       196 ~----~---~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (452)
                      .    .   ....+..+.+..+...++.+..+|++.+ .+|.+...++..+..+++++-|.....+......-.++.. .
T Consensus       206 P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~e~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a-~  284 (510)
T KOG3574|consen  206 PLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDEELELGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQA-A  284 (510)
T ss_pred             cCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhh-h
Confidence            1    0   0111223333333333333222222221 1222222233334455666666666655444333333222 1


Q ss_pred             hhhccccccCCCCCchHHHHHHHHHHHHHHhHHHHHHhccCC--CCchhHH----HHHHHHHHHHHHHHHHHhhhcCCCC
Q 012965          268 FLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSP--PRVESYM----QIVFVVSSVSLLLPIVTSFLVAPSN  341 (452)
Q Consensus       268 ~~~~p~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  341 (452)
                      ....+.-+.| .|.+.. -.+...+..++.+++.+....|+.  +|+....    ..-.........+........++  
T Consensus       285 da~t~LkLle-~Gv~ke-~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~--  360 (510)
T KOG3574|consen  285 DALTSLKLLE-HGVPKE-ELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHS--  360 (510)
T ss_pred             hhccchHHHH-cCCChh-HheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccC--
Confidence            2233332222 222221 111222444555555555555542  2332111    11111111112222222222111  


Q ss_pred             cCCCCcc-cchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhhh
Q 012965          342 VKSGGIS-FSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPL  396 (452)
Q Consensus       342 ~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~  396 (452)
                        ++... ....+.+....+.+......+....+..+++.|+...|+.+.+.|..-
T Consensus       361 --~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLs  414 (510)
T KOG3574|consen  361 --DGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLS  414 (510)
T ss_pred             --CCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHH
Confidence              11111 111222333444454555455667888899999999999998888753

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.69  E-value=0.00046  Score=64.49  Aligned_cols=98  Identities=9%  Similarity=-0.008  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHH
Q 012965          284 GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEA  363 (452)
Q Consensus       284 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  363 (452)
                      +.+.....++.+.|+++.|++.||+|||+.  .....++..++... .......       ++.....+.+...=.+.|+
T Consensus        87 ~~Vn~~A~vGti~GQl~FG~lgD~~GRK~v--YG~~liImIi~t~~-~~~s~~~-------~~~~~~m~~L~~~R~~LGi  156 (538)
T KOG0252|consen   87 ALVNAAALVGTIFGQLFFGWLGDKFGRKKV--YGKELIIMIICSAL-SGLSVGT-------TSPLGVMMTLCFFRFLLGI  156 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchhh--hhHHHHHHHHHHHH-hccCCCC-------CCCcchhhHHHHHHHHhhc
Confidence            456667778999999999999999999983  22233333222222 1111111       1111122345555677899


Q ss_pred             HhhchhhHHHHHHhhcCCcccccchhhh
Q 012965          364 CVGIFWPSIMKMRSQYIPEEARSTIMNF  391 (452)
Q Consensus       364 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~  391 (452)
                      |.|.-+|...+..+|...++.||+-.+.
T Consensus       157 GIGGDYPlSAtI~SE~an~~~RGa~iaa  184 (538)
T KOG0252|consen  157 GIGGDYPLSATIMSESANKKTRGAFIAA  184 (538)
T ss_pred             cccCCCcchHHHhhhhhhhccccceeEE
Confidence            9999999999999999999999976544

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.54  E-value=0.0024  Score=58.93  Aligned_cols=129  Identities=14%  Similarity=0.141  Sum_probs=87.6

Q ss_pred             hhhHHHHHhh-cCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHH
Q 012965           57 GPYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILG  134 (452)
Q Consensus        57 ~p~l~~i~~~-~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~  134 (452)
                      ..+++...+| .|.+..+.....+..+...+++..++.++..|+...|.+....++..+-+ ..++.++...+. +-++.
T Consensus       256 gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~-~l~~i  334 (422)
T COG0738         256 GSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVALY-ALFLI  334 (422)
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHHH-HHHHH
Confidence            5556666666 77777777776677767666777778888889999999988887776654 557788865554 45778


Q ss_pred             HhHhhhhhhhhhhhhhhhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCC
Q 012965          135 GIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSL  195 (452)
Q Consensus       135 G~~~~~~~~~~~~~~i~e~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~  195 (452)
                      |+..+..+|...+ .-.+. .+.....+        +..+...+|+.+.|.+-+++.|..+.
T Consensus       335 g~F~simfPTIfs-lal~~l~~~ts~~s--------~~l~maivGGAiiP~l~G~i~d~~g~  387 (422)
T COG0738         335 GLFNSIMFPTIFS-LALKNLGEHTSVGS--------GLLVMAIVGGAIIPPLQGVIADMFGI  387 (422)
T ss_pred             HHHhHHHHHHHHH-HHHhccCccccccc--------eeeeeheecchHHHHHHHHHHHhhhh
Confidence            9999999998765 43322 21112111        22223457778888888888876554

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.44  E-value=0.0017  Score=62.25  Aligned_cols=135  Identities=13%  Similarity=0.158  Sum_probs=83.0

Q ss_pred             cchhHHHHHHHHHhhhchhhhh-hhhhccccccC-CCCC--ch-HHHHHHHHHHHHHHhHHHHHHhccCC--CCchhHHH
Q 012965          245 SDEKIALLGAIQSLFEGSMYTF-VFLWTPALSPN-DEEI--PH-GFIFATFMLASMLGSSLASRLMARSP--PRVESYMQ  317 (452)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~-~~~~--~~-~~~~~~~~i~~~~~~~~~g~l~dr~g--~~~~~~~~  317 (452)
                      .++|...+.....+.....+.. .....| |+++ ..+.  +. |++.+...++..+++++.|++..|.+  ||+   +.
T Consensus        31 t~wrsi~l~~~~sfl~~v~~sI~~~s~wp-Yl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~P---li  106 (488)
T KOG2325|consen   31 TNWRSIYLALLNSFLVAVQFSIYLTSMWP-YLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKP---LI  106 (488)
T ss_pred             CchHhHHHHHHHHHHHhhhheEEEeecch-hhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccC---HH
Confidence            4455555555555444433332 122233 3332 1222  22 88888899999999999999999988  555   67


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhh
Q 012965          318 IVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRI  394 (452)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~  394 (452)
                      .+..+..++.++-.......+      .    ..++.+++-++.|++.+ .....-+++++..-.+.|.++++..+.
T Consensus       107 ~s~ii~~~g~llY~~l~~~~~------~----~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~  172 (488)
T KOG2325|consen  107 VSFLIAIIGNLLYLALAYVPN------G----VKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSG  172 (488)
T ss_pred             HHHHHHHHHHHHHHHHHhccc------c----hHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhh
Confidence            777777777666533333311      0    12577788888887776 345677888886666666666655444

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=97.40  E-value=0.022  Score=52.22  Aligned_cols=89  Identities=16%  Similarity=0.174  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHH
Q 012965          284 GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEA  363 (452)
Q Consensus       284 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  363 (452)
                      +.++...-..+++...+.|.++||+|||+.  .+...++..+.++.-. ....               ..++++-++-|+
T Consensus        72 a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~--cl~~cily~~scl~k~-~~~~---------------~~L~~GRvlgGi  133 (354)
T PF05631_consen   72 AILFVAGFASSAIFGTFVGSLADRYGRKKA--CLLFCILYSLSCLTKH-SSNY---------------PVLLLGRVLGGI  133 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCchHH--HHHHHHHHHHHHHHHh-cccc---------------HHHHHHHHHHHH
Confidence            555555556788888899999999999983  3334444444443211 1111               367778888888


Q ss_pred             HhhchhhHHHHH-Hhhc----CCcccccchhh
Q 012965          364 CVGIFWPSIMKM-RSQY----IPEEARSTIMN  390 (452)
Q Consensus       364 ~~~~~~~~~~~~-~~~~----~p~~~r~~~~g  390 (452)
                      +....+...-++ +.|.    +|++..+...+
T Consensus       134 aTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~  165 (354)
T PF05631_consen  134 ATSLLFSAFESWMVHEHNKRGFPQEWLSDTFS  165 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence            888777665553 3443    34444444444

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.38  E-value=0.0043  Score=54.53  Aligned_cols=127  Identities=20%  Similarity=0.134  Sum_probs=69.7

Q ss_pred             HHhhhchhhhhhhhhccccccCCCCCchHHHH---HHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHH
Q 012965          256 QSLFEGSMYTFVFLWTPALSPNDEEIPHGFIF---ATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIV  332 (452)
Q Consensus       256 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~  332 (452)
                      .....+..|.+ ..|.|.+ ++.++.++....   ....++..+ .++.|.+.||+|.+.  .+.++......+......
T Consensus        11 v~~~~Gt~Y~F-s~yS~~L-k~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~--~l~iG~~~~~~GY~~~~l   85 (250)
T PF06813_consen   11 VQLCSGTTYTF-SAYSPQL-KSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWV--VLLIGAVLGFVGYGLLWL   85 (250)
T ss_pred             HHHhcCcccch-hhhhHHH-HHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHH--HHHHHHHHHHHHHHHHHH
Confidence            33444455553 5555554 456777765433   333456555 488899999998776  355555555555544333


Q ss_pred             HhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhhh
Q 012965          333 TSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPL  396 (452)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~  396 (452)
                      .....-        ...+.|...+..++.+.+....+........+.+|+ +||++.|+.-...
T Consensus        86 ~~~~~i--------~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~  140 (250)
T PF06813_consen   86 AVSGRI--------PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFF  140 (250)
T ss_pred             HHhCcc--------CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHH
Confidence            222210        011123444444444444444445555566688986 6999988755433

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.29  E-value=6.3e-06  Score=80.55  Aligned_cols=98  Identities=13%  Similarity=0.171  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHH
Q 012965          284 GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEA  363 (452)
Q Consensus       284 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  363 (452)
                      +...+...++..+|+++.|+++||+|||+.  +..+..+..++.++..+.....+            .+...++-++.|+
T Consensus        49 ~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~--~~~~~~~~~i~~~~~~~~~~~~~------------~~~~~~~R~~~G~  114 (451)
T PF00083_consen   49 SLLTSSFFIGAIVGALIFGFLADRYGRKPA--LIISALLMIIGSILIAFAPSYNN------------FWMLLIGRFLIGF  114 (451)
T ss_pred             HHHHHHHHhhhccccccccccccccccccc--ccccccccccccccccccccccc------------ccccccccccccc
Confidence            566677789999999999999999999983  44554444444444333331100            1366777888999


Q ss_pred             HhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          364 CVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       364 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      +.|...+....++.|..|++.|+...++.+..
T Consensus       115 ~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~  146 (451)
T PF00083_consen  115 GIGGAYVVSPIYISEIAPPKHRGFLSSLFQLF  146 (451)
T ss_pred             cccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999888777764

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.19  E-value=0.0017  Score=63.25  Aligned_cols=89  Identities=9%  Similarity=0.017  Sum_probs=54.7

Q ss_pred             hhhHHHHHhh-cCCCcchhHHHHHHHHhhhhhccccccccccc----cCcchHHHHHHHHHHH-HH-HHhcCccHHHHHH
Q 012965           57 GPYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK----QGRKRACVTYCLTYIL-SC-ITKHSPQYKILMI  129 (452)
Q Consensus        57 ~p~l~~i~~~-~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr----~Grr~~l~~~~~~~~i-~~-l~~~~~~~~~l~~  129 (452)
                      .-.+|.+.++ .|+|..+.+.+.....+.+.++.+++|+++||    ..+|........++.+ +. .....++......
T Consensus       293 ~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~  372 (495)
T KOG2533|consen  293 SYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYG  372 (495)
T ss_pred             HHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhH
Confidence            3344555555 56888888877777777788888899999999    6777777777777655 53 3333333443333


Q ss_pred             HHHHHHhHhhhhhhhh
Q 012965          130 GRILGGIATSLLFSAF  145 (452)
Q Consensus       130 ~r~l~G~~~~~~~~~~  145 (452)
                      .-.....+.....+..
T Consensus       373 ~~~~~~~~~~~~~~~~  388 (495)
T KOG2533|consen  373 AFLIGPYGLIATAIIA  388 (495)
T ss_pred             HHHhcchhhHHHHHHH
Confidence            3333333333333343

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.11  E-value=0.027  Score=53.45  Aligned_cols=106  Identities=13%  Similarity=0.269  Sum_probs=68.8

Q ss_pred             hHHHHHHHHHHHHH-H---HhcCccH------HHHHHHHHHHHhHhhhhhhhhhhhhhhhc-cc--ccchhhHHHHHHHH
Q 012965          103 RACVTYCLTYILSC-I---TKHSPQY------KILMIGRILGGIATSLLFSAFESWLVAEH-NK--RGFEQQWLSITFSK  169 (452)
Q Consensus       103 ~~l~~~~~~~~i~~-l---~~~~~~~------~~l~~~r~l~G~~~~~~~~~~~~~~i~e~-~~--r~~~~~~~~~~~~~  169 (452)
                      |+++.+.+++.+|. +   .+.-++.      +.++++-.+.++|.|..-|...+ +.+|. ++  +.++.+..    + 
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~-~~~dq~~~~~~~~~~~~F----~-   75 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISP-FGADQYDEDDDSRRDSFF----N-   75 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHH-HHHHCSSTTTTTHHHHHH----H-
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHH-HHHHHhcccchhhhhhhH----H-
Confidence            56778888888874 3   2333333      68899999999999999999866 87776 22  23333322    2 


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHH
Q 012965          170 AIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIIL  216 (452)
Q Consensus       170 ~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~  216 (452)
                      ....+..+|..++.....++.++  ++|...|.+.++..+++.....
T Consensus        76 ~fY~~in~G~~~~~~~~~~i~~~--~~~~~~f~i~~~~~~~~~~~f~  120 (372)
T PF00854_consen   76 WFYWGINIGSLFSPTLVPYIQQN--YGWFLGFGIPAIGMLLALIVFL  120 (372)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHC--S-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHhhcccchhhccc--cchhhhhhHHHHHHHHHHHHHH
Confidence            22334556777776777776654  4556778887777776665554

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=97.09  E-value=0.084  Score=47.55  Aligned_cols=90  Identities=20%  Similarity=0.237  Sum_probs=66.9

Q ss_pred             cccccccccCcchHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc-----ccc---------
Q 012965           91 IVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH-----NKR---------  156 (452)
Q Consensus        91 ~~G~l~Dr~Grr~~l~~~~~~~~i~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~-----~~r---------  156 (452)
                      +.+.+..++|-|+++.++...+......=+-+.+..++-.-...|++.+..+..--+ |+++.     +.|         
T Consensus        77 ~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl~pr~~tlVPa~~~~G~aa~p~W~Skgt-YlT~~g~~ya~~~~~q~~~~~~  155 (390)
T KOG3097|consen   77 FMPLLIRFLGTKWTMVLAVFPYALYIAANLEPRYETLVPAGLVLGMAAGPIWASKGT-YLTPMGQNYANQRGEQAGDGMK  155 (390)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHhhcchhHHhhccHHHhhccccccccccCcc-eecHHHHHHHHhhhhhccCcee
Confidence            455889999999999999988887666667788899999999999999998877645 65543     334         


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHH
Q 012965          157 GFEQQWLSITFSKAIFLGNGLVAIL  181 (452)
Q Consensus       157 ~~~~~~~~~~~~~~~~~g~~ig~~~  181 (452)
                      .+..+.....+......|+.+...+
T Consensus       156 ~~ffg~Ffii~~~~qv~gn~issli  180 (390)
T KOG3097|consen  156 VRFFGEFFIIFQCAQVWGNLISSLI  180 (390)
T ss_pred             eeehhHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666666666666555544

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=96.93  E-value=0.0036  Score=57.05  Aligned_cols=122  Identities=13%  Similarity=0.109  Sum_probs=66.0

Q ss_pred             hhhccccccccccccCcchHHHHHHHHHHHHH-HH--hcCccHH--HHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccc
Q 012965           85 SMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT--KHSPQYK--ILMIGRILGGIATSLLFSAFESWLVAEH---NKR  156 (452)
Q Consensus        85 ~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~--~~~~~~~--~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r  156 (452)
                      ..-+.++.+.+.||+|||+++..+.+++++.. +.  ...+|..  .+..+|++...+.    .++.. |..|.   .-|
T Consensus       394 efPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~f----qvaYv-YtPEVyPTavR  468 (528)
T KOG0253|consen  394 EFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAF----QVAYV-YTPEVYPTAVR  468 (528)
T ss_pred             hCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchh----eEEEE-ecCcccchhhh
Confidence            33444579999999999999999999998864 33  3344443  3445565544333    33312 55565   223


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHhccc-cccC
Q 012965          157 GFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWT-ENYG  224 (452)
Q Consensus       157 ~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~-~~~~  224 (452)
                      +...+   .    +.. ..-+|.++.|+++ ...+   -.-..+..+.+.+.+++.+... ..| |+++
T Consensus       469 atgvG---t----cSs-maRIggI~~p~iA-~~~e---~s~sl~i~vy~~~~ilagIavc-ffPiEtkG  524 (528)
T KOG0253|consen  469 ATGVG---T----CSS-MARIGGIFSPVIA-MRAE---LSTSLPIFVYGALFILAGIAVC-FFPIETKG  524 (528)
T ss_pred             hcchh---h----hhh-HHhhhhhhhhHHH-HHhc---cceeehHHHHHHHHHHHHHHhe-eeeeccCC
Confidence            33222   1    111 1336667777766 2221   1223455555555555555554 344 4443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.70  E-value=0.02  Score=53.81  Aligned_cols=111  Identities=14%  Similarity=0.164  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHH
Q 012965          285 FIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEAC  364 (452)
Q Consensus       285 ~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  364 (452)
                      +...++++..++..+.+-|+.||+|-|..  ..++.....++..+=.......-+     +..+-  .+...+..+.+..
T Consensus        83 wlsmIym~v~vp~gf~~mw~ldk~GLR~a--~llgt~ln~iGa~Ir~iss~p~v~-----~~f~~--~l~~~Gq~iaa~A  153 (480)
T KOG2563|consen   83 WLSMIYMVVSVPFGFAAMWILDKFGLRTA--LLLGTVLNGIGAWIRLISSLPFVP-----PLFRR--PLTHTGQSIAAAA  153 (480)
T ss_pred             HHHHHHHHHHHHHhhHHHHhhcccchHHH--HHHHHHHHHHHHHHhhhccCcccc-----ccchh--hhhHHhHHHHHHh
Confidence            55566778889999999999999998874  555555555444432221111000     00110  1445666666655


Q ss_pred             hhchhhHHHHHHhhcCCcccccchhhhhhhh--hhHHHHHHH
Q 012965          365 VGIFWPSIMKMRSQYIPEEARSTIMNFFRIP--LNIFVCVVL  404 (452)
Q Consensus       365 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~--~~~~~~~~l  404 (452)
                      .-.......-...-.+|+++|+++..+..+.  .|..++..+
T Consensus       154 q~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ll  195 (480)
T KOG2563|consen  154 QPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLL  195 (480)
T ss_pred             hhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhc
Confidence            5544444445566679999999998776665  566555544

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=96.56  E-value=0.44  Score=44.77  Aligned_cols=40  Identities=10%  Similarity=0.102  Sum_probs=30.3

Q ss_pred             hhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhh
Q 012965          352 SLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNF  391 (452)
Q Consensus       352 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~  391 (452)
                      +..+....++|+..|-.......++.+.+|++++-.+-.+
T Consensus       344 ~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~  383 (406)
T KOG1479|consen  344 GWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNL  383 (406)
T ss_pred             hHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHH
Confidence            4567778888888887778888889999888876555433

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.43  E-value=0.98  Score=43.71  Aligned_cols=51  Identities=10%  Similarity=0.078  Sum_probs=37.3

Q ss_pred             hhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh--hhHHHHH
Q 012965          352 SLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP--LNIFVCV  402 (452)
Q Consensus       352 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~--~~~~~~~  402 (452)
                      +..++..+++|+..|-.......+..+..++++|..+-.+..+.  .|...|.
T Consensus       373 ~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs  425 (437)
T TIGR00939       373 AYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGA  425 (437)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667788899999988888888899999888887766554443  3444443

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=95.95  E-value=1.7  Score=41.99  Aligned_cols=46  Identities=13%  Similarity=0.190  Sum_probs=33.4

Q ss_pred             hHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhhhhH
Q 012965          353 LQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNI  398 (452)
Q Consensus       353 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~  398 (452)
                      .+++..++..+.....+....+.-+++.+|..-|+.|.+.|+..|.
T Consensus       407 lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNL  452 (544)
T PF13000_consen  407 LVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNL  452 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhc
Confidence            3344455555566666677888999999999999999888875443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=95.90  E-value=0.097  Score=53.23  Aligned_cols=151  Identities=17%  Similarity=0.202  Sum_probs=82.2

Q ss_pred             ccccCCCCCchH---HHHHHHHHHHHHHhHHHHHHhcc-CCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcc
Q 012965          273 ALSPNDEEIPHG---FIFATFMLASMLGSSLASRLMAR-SPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGIS  348 (452)
Q Consensus       273 ~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (452)
                      .|+.+..+.+..   .++.......-+..+++|+++|+ +|+++  .+..+.++..++..++......   .    ....
T Consensus        12 lYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~--tIl~~~ii~~lG~~llai~a~~---~----~~~~   82 (654)
T TIGR00926        12 LYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFK--TILYLSIVYVVGHALLSFGAIP---S----SGHP   82 (654)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHhccCc---c----cccc
Confidence            344444555443   33344444556667788999997 56665  3555555555555444332111   0    0000


Q ss_pred             cchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccc---cchhhhhhhhhhH--HHH----HHHhcc-c----cCCchH
Q 012965          349 FSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEAR---STIMNFFRIPLNI--FVC----VVLYNV-D----AFPITV  414 (452)
Q Consensus       349 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r---~~~~g~~~~~~~~--~~~----~~l~~~-~----~~~~~~  414 (452)
                      ......++++.+...|.|..-|...+...|.++++.+   -+.+.++....|.  +++    .++.+. .    ..++..
T Consensus        83 ~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~  162 (654)
T TIGR00926        83 LHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPL  162 (654)
T ss_pred             hHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHH
Confidence            1112456778888899999999999999999986543   3444444333332  222    222211 1    124666


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 012965          415 MFGMCSIFLLVASVLQRR  432 (452)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~  432 (452)
                      .+.++++..+++.+....
T Consensus       163 aF~i~~i~m~ia~lvf~~  180 (654)
T TIGR00926       163 AFGVPAILMILALIVFMA  180 (654)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            777777666665554443

>PF12832 MFS_1_like: MFS_1 like family

Probab=95.78  E-value=0.049  Score=38.16  Aligned_cols=46  Identities=17%  Similarity=0.168  Sum_probs=36.3

Q ss_pred             hhhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCch
Q 012965          267 VFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVE  313 (452)
Q Consensus       267 ~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~  313 (452)
                      ..-+.|.+.++ .|.+.   |.+.++..+..+++.++.|+++||.++++.
T Consensus        19 ~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~   67 (77)
T PF12832_consen   19 LYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKV   67 (77)
T ss_pred             HHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHH
Confidence            46677777774 45544   677777778899999999999999998883

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=95.73  E-value=1.2  Score=44.72  Aligned_cols=154  Identities=17%  Similarity=0.135  Sum_probs=87.5

Q ss_pred             hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhcccccccccccc-CcchHHHHHHHHHHHHH-H---Hh----cCc-----
Q 012965           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCLTYILSC-I---TK----HSP-----  122 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~-Grr~~l~~~~~~~~i~~-l---~~----~~~-----  122 (452)
                      .+.+.++.++++.+.....-..........+....++.++|-| ||-+++.++.++..++. +   .+    +.+     
T Consensus        58 ~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~  137 (571)
T KOG1237|consen   58 SNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKF  137 (571)
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Confidence            5666677788888876555443433333445555689999975 89999998887776552 1   11    111     


Q ss_pred             ----------c---HHHHHHHHHHHHhHhhhhhhhhhhhhhhhc-c---cccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012965          123 ----------Q---YKILMIGRILGGIATSLLFSAFESWLVAEH-N---KRGFEQQWLSITFSKAIFLGNGLVAILSGLF  185 (452)
Q Consensus       123 ----------~---~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~-~---~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l  185 (452)
                                +   ...++.+.-+..+|.|+.-|...+ +=+|. +   ++++..  ....++ ........|..++..+
T Consensus       138 ~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~-fGadQfd~~~~~~~~~--~~~fFn-W~yf~~~~g~l~a~t~  213 (571)
T KOG1237|consen  138 KPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLA-FGADQFDELDPVEVKG--IPSFFN-WFYFSQNGGALLAQTV  213 (571)
T ss_pred             CCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchh-hcccccCccCcchhhC--cccchh-HHHHHHHHHHHHHHHH
Confidence                      1   125667777777888988887755 54443 2   111111  001122 2223344666666666


Q ss_pred             hhhhhcccCCCcchhhHHHHHHHHHHHHHHH
Q 012965          186 GNLLVDSFSLGPVAPFDAAACFLAIGMVIIL  216 (452)
Q Consensus       186 ~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~  216 (452)
                      ..+.-++.+|.  .-|.+..+...++.++..
T Consensus       214 ~vyiq~~~~w~--lgf~i~~~~~~lai~iF~  242 (571)
T KOG1237|consen  214 LVYIQDNVGWK--LGFGIPTVLNALAILIFL  242 (571)
T ss_pred             HHhhhhcccce--eeccHHHHHHHHHHHHHH
Confidence            66655555554  446666665555544433

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=95.66  E-value=2.4  Score=41.64  Aligned_cols=78  Identities=9%  Similarity=0.047  Sum_probs=43.0

Q ss_pred             HHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCC----ch--HHHHHHHHHHHHHHhHHHHHHhcc
Q 012965          234 TQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEI----PH--GFIFATFMLASMLGSSLASRLMAR  307 (452)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~----~~--~~~~~~~~i~~~~~~~~~g~l~dr  307 (452)
                      ...++..+.++|+|....++.............-..|-. ..++.+..    +.  |......++..++..++++++.+|
T Consensus       267 ~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~-~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~  345 (491)
T PF03219_consen  267 MSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKS-QLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRR  345 (491)
T ss_pred             ccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667778888887776665554444443322122221 12222211    11  444455566666666888999999


Q ss_pred             CCCCc
Q 012965          308 SPPRV  312 (452)
Q Consensus       308 ~g~~~  312 (452)
                      +|-+.
T Consensus       346 ~GW~~  350 (491)
T PF03219_consen  346 FGWRT  350 (491)
T ss_pred             hhHHH
Confidence            88665

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=95.18  E-value=0.12  Score=50.23  Aligned_cols=118  Identities=14%  Similarity=0.137  Sum_probs=67.5

Q ss_pred             HHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchh
Q 012965          290 FMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFW  369 (452)
Q Consensus       290 ~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  369 (452)
                      .++..++.+...|.++||+|||....+.....+....+..  +.. .                ...+ ..-...+.+..+
T Consensus        71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~--~~~-~----------------~~~~-~~~l~g~~~~~~  130 (463)
T KOG2816|consen   71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLL--FQG-Y----------------WFFL-LLGLSGGFSAIF  130 (463)
T ss_pred             hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHH--HHH-H----------------HHhh-hcccccchhhhh
Confidence            3577888899999999999998742222222222221111  111 1                1122 112223445566


Q ss_pred             hHHHHHHhhcCCcccccchhhhhhhhh------hHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Q 012965          370 PSIMKMRSQYIPEEARSTIMNFFRIPL------NIFVCVVLYNVDAFPITVMFGMCSIFLLVASVL  429 (452)
Q Consensus       370 ~~~~~~~~~~~p~~~r~~~~g~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  429 (452)
                      ....++++|...++.|...+|+.+...      ++..++.....  .+....+.+..+........
T Consensus       131 s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~--~~~a~~f~ia~~~~~~~~~y  194 (463)
T KOG2816|consen  131 SVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF--LGIALVFLIAAASGILSLLY  194 (463)
T ss_pred             hhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHH
Confidence            778899999999999999998877632      22333444343  45555555555555544443

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=94.87  E-value=0.68  Score=41.60  Aligned_cols=71  Identities=15%  Similarity=0.148  Sum_probs=46.9

Q ss_pred             HHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHHhHhhhhhhhh
Q 012965           75 GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAF  145 (452)
Q Consensus        75 g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~  145 (452)
                      |.+...-.+...+.-.......||+---.-..+..++.+.+. +.+++++.++-+.+-.+..++.|.....-
T Consensus        65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTF  136 (409)
T KOG3880|consen   65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITF  136 (409)
T ss_pred             chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeeh
Confidence            444444444455555556777888654333444455556665 66999999999999899888888766554

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=94.75  E-value=0.37  Score=46.74  Aligned_cols=107  Identities=15%  Similarity=0.081  Sum_probs=64.6

Q ss_pred             cccCCCCCchHHHHHHHHHHHHH--HhHHHHHHhccC---CCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcc
Q 012965          274 LSPNDEEIPHGFIFATFMLASML--GSSLASRLMARS---PPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGIS  348 (452)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~i~~~~--~~~~~g~l~dr~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (452)
                      ++++.++.+++.......+..++  ..++.|.++|-+   |+||...+.++..+..+............       .+. 
T Consensus        15 ~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~-------~s~-   86 (433)
T PF03092_consen   15 FLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASE-------SSA-   86 (433)
T ss_pred             HHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccccc-------chh-
Confidence            55677888887666666655543  457999999986   55554566666665544444433333210       111 


Q ss_pred             cchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCccc--ccchhhh
Q 012965          349 FSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEA--RSTIMNF  391 (452)
Q Consensus       349 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~--r~~~~g~  391 (452)
                         ....+.+++..++.........++..|...++.  |+...+.
T Consensus        87 ---~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~  128 (433)
T PF03092_consen   87 ---AIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSF  128 (433)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHH
Confidence               234555666777787777888888888764333  4444443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=94.34  E-value=0.51  Score=38.23  Aligned_cols=87  Identities=9%  Similarity=0.059  Sum_probs=59.1

Q ss_pred             HHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhch
Q 012965          289 TFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIF  368 (452)
Q Consensus       289 ~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  368 (452)
                      +.-....+..++.+.+.+++|.|+.  +.++.....+-.... +....               +..+.+..+.|++.+..
T Consensus        45 i~Y~~~~~s~l~~P~iv~~lg~K~s--m~lg~~~y~~y~~~~-~~~~~---------------~~l~~~s~l~G~~~a~l  106 (156)
T PF05978_consen   45 ILYGSFAISCLFAPSIVNKLGPKWS--MILGSLGYAIYIASF-FYPNS---------------YTLYPASALLGFGAALL  106 (156)
T ss_pred             HHHHHHHHHHHhHHHHHHHHhhHHH--HHHHHHHHHHHHHHH-HhhhH---------------HHHHHHHHHHhhhhHHh
Confidence            3334556666778888999988773  444443333222221 12222               46788889999999999


Q ss_pred             hhHHHHHHhhcCCcccccchhhhhh
Q 012965          369 WPSIMKMRSQYIPEEARSTIMNFFR  393 (452)
Q Consensus       369 ~~~~~~~~~~~~p~~~r~~~~g~~~  393 (452)
                      |...-.++.+..+++.+++..|+.-
T Consensus       107 W~aqg~ylt~~s~~~~~~~~~~ifw  131 (156)
T PF05978_consen  107 WTAQGTYLTSYSTEETIGRNTGIFW  131 (156)
T ss_pred             hHhhhHHHHHcCCHHHHhhHHHHHH
Confidence            9999999999998888888776533

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=93.08  E-value=0.019  Score=57.03  Aligned_cols=118  Identities=13%  Similarity=0.130  Sum_probs=2.9

Q ss_pred             ccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCC-----------
Q 012965          275 SPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPS-----------  340 (452)
Q Consensus       275 ~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  340 (452)
                      .++.++.+.   |.+.+..-++.++..++..++.+|.+|.+  ++..+..+.+++.++...-.....++           
T Consensus        29 iErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrpr--wig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~  106 (539)
T PF03137_consen   29 IERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPR--WIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGN  106 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc--eeeecHHHHHHHHHHHhccHhhcCCCccccccccccc
Confidence            345566644   67777788899999988899988865443  57777777766665544322111110           


Q ss_pred             ------------------------CcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhh
Q 012965          341 ------------------------NVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRI  394 (452)
Q Consensus       341 ------------------------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~  394 (452)
                                              ...+.......+.++++.++.|+|....++...+++-|.++++..+...|+...
T Consensus       107 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~  184 (539)
T PF03137_consen  107 SSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYA  184 (539)
T ss_dssp             ---------------------------------------------SSS------------------------------
T ss_pred             cccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhH
Confidence                                    000111222346788899999999999999999999999999998877777665

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=92.77  E-value=0.29  Score=46.40  Aligned_cols=129  Identities=15%  Similarity=0.143  Sum_probs=76.6

Q ss_pred             hhhhhhhccccccCCCCCc---hHHHHHHHHHHHHHHhHHHHHHhcc----CCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 012965          264 YTFVFLWTPALSPNDEEIP---HGFIFATFMLASMLGSSLASRLMAR----SPPRVESYMQIVFVVSSVSLLLPIVTSFL  336 (452)
Q Consensus       264 ~~~~~~~~p~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~g~l~dr----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (452)
                      +..-..+.|.|.++ .|.+   .+.++...-+.+++.+++.|..+||    +||||. .+........+.+.+..+....
T Consensus        48 wA~elsy~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRP-fI~~~s~~i~~~l~Lig~aaDi  125 (498)
T KOG0637|consen   48 WALELSYLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRP-FILAGSLLIAVSLFLIGYAADI  125 (498)
T ss_pred             HHHHhccccHHHHH-cCCCcccccccccccccccceecccccccccccccccccccc-hHHHhhHHHHHHHhhhhhHhhh
Confidence            33345667766653 2332   2555566667788889999999996    688884 3444444444444444333222


Q ss_pred             cC--CCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccc-hhhhhhh
Q 012965          337 VA--PSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARST-IMNFFRI  394 (452)
Q Consensus       337 ~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~-~~g~~~~  394 (452)
                      ..  .+++..+.........++++-+.-+.....+...-++..|...++++.+ +++...+
T Consensus       126 g~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~  186 (498)
T KOG0637|consen  126 GLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSF  186 (498)
T ss_pred             hHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHH
Confidence            11  0000111222334456667777777777788888999999987777666 7666554

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=91.59  E-value=15  Score=36.07  Aligned_cols=48  Identities=8%  Similarity=0.063  Sum_probs=31.6

Q ss_pred             HHHHHHHHHhhchhh-HHHHHHhhcCCcccccchhhhhhhhh--hHHHHHH
Q 012965          356 LGFCTFEACVGIFWP-SIMKMRSQYIPEEARSTIMNFFRIPL--NIFVCVV  403 (452)
Q Consensus       356 ~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~r~~~~g~~~~~~--~~~~~~~  403 (452)
                      +.+...........+ ..|.+++|.+..++..+-+++.+...  +.++++.
T Consensus       133 ~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~  183 (472)
T TIGR00769       133 LFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGR  183 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444445 78999999999999888888877753  3344443

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK03612 spermidine synthase; Provisional

Probab=90.93  E-value=11  Score=37.52  Aligned_cols=32  Identities=6%  Similarity=-0.168  Sum_probs=20.3

Q ss_pred             hhcCCCcchhHHHHHHHHhhhhhccccccccc
Q 012965           65 STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLA   96 (452)
Q Consensus        65 ~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~   96 (452)
                      .-+|.+..+.+.+.++...+..+++.+.|++.
T Consensus        43 ~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~   74 (521)
T PRK03612         43 YLLGDSVTQFSTVIGLMLFAMGVGALLSKYLL   74 (521)
T ss_pred             HHhCchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            45677777777666666665556555566555

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=90.64  E-value=1.4  Score=39.62  Aligned_cols=97  Identities=22%  Similarity=0.249  Sum_probs=60.2

Q ss_pred             hHHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHH
Q 012965          283 HGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFE  362 (452)
Q Consensus       283 ~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  362 (452)
                      .+.......+....+.++.|++.||.|||+.  ....................             ...+.........+
T Consensus        41 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~--~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g  105 (338)
T COG0477          41 YGLLLSAFFLGYAIGSLLAGPLGDRYGRRKV--LIIGLLLFLLGTLLLALAPN-------------VGLALLLILRLLQG  105 (338)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhccccccchHH--HHHHHHHHHHHHHHHHhCcc-------------chHHHHHHHHHHHH
Confidence            4667777777888888999999999988852  33333221222112111111             00124444445577


Q ss_pred             HHhhchhhHHHHHHhhcCCc-ccccchhhhhhh
Q 012965          363 ACVGIFWPSIMKMRSQYIPE-EARSTIMNFFRI  394 (452)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~p~-~~r~~~~g~~~~  394 (452)
                      ++.+...+...++..|..|+ +.|+...+....
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (338)
T COG0477         106 LGGGGLLPVASALLSEWFPEATERGLAVGLVTL  138 (338)
T ss_pred             hhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            88887889999999999998 556666555444

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=90.20  E-value=2.8  Score=39.77  Aligned_cols=113  Identities=18%  Similarity=0.224  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCccc---ccchhhhh
Q 012965          316 MQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEA---RSTIMNFF  392 (452)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~---r~~~~g~~  392 (452)
                      +..+..+..++..++.........      +.........+++.+.++|.|..-|...++..|.++++.   |.+.+..+
T Consensus         4 I~~g~~~~~~G~~ll~l~~~~~~~------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~f   77 (372)
T PF00854_consen    4 ILLGSIVYLLGHVLLTLSAIPPSL------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWF   77 (372)
T ss_dssp             HHHHHHHHHHHHHH--HHHTSSSC------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhHHHHhcchh------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHH
Confidence            555566666665554433333111      001112477888899999999999999999999999874   33444444


Q ss_pred             hhhhhH--HHHHHH--hccccCCchHHHHHHHHHHHHHHHHHHhhh
Q 012965          393 RIPLNI--FVCVVL--YNVDAFPITVMFGMCSIFLLVASVLQRRLM  434 (452)
Q Consensus       393 ~~~~~~--~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (452)
                      ....|.  .++...  ......++...|.++.+..+++.......+
T Consensus        78 Y~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~  123 (372)
T PF00854_consen   78 YWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGR  123 (372)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCC
Confidence            444333  333222  111235777777777777776666554443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=90.19  E-value=15  Score=35.05  Aligned_cols=128  Identities=6%  Similarity=0.007  Sum_probs=68.1

Q ss_pred             hccccccCC-CCCchH----HHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCC
Q 012965          270 WTPALSPND-EEIPHG----FIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKS  344 (452)
Q Consensus       270 ~~p~~~~~~-~~~~~~----~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (452)
                      ++..|+.+. .+.+..    .++-...-..++.-++...+.|..+.|+  .+++..+...+...++.+....        
T Consensus        25 fl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykp--viil~~~~~i~t~~lll~~~sv--------   94 (412)
T PF01770_consen   25 FLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKP--VIILQALSYIITWLLLLFGTSV--------   94 (412)
T ss_pred             cchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHCcH--------
Confidence            344455443 555442    3333334456666778888999998887  2433333333333333332222        


Q ss_pred             CCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh------hhHHHHHHHhccccCCchHH
Q 012965          345 GGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNVDAFPITVM  415 (452)
Q Consensus       345 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~~~~~  415 (452)
                             ...-+.-+.+|...+ .....++++-..+|+++--++.|..+.+      .+.++|..+....+.++...
T Consensus        95 -------~~mq~~q~~yg~~~a-~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L  163 (412)
T PF01770_consen   95 -------LAMQLMQFFYGLATA-AEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQL  163 (412)
T ss_pred             -------HHHHHHHHHHHHHHH-HHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence                   244455555665555 3455667777777887755565555543      33345555544444555444

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=89.67  E-value=7.7  Score=34.23  Aligned_cols=64  Identities=8%  Similarity=0.004  Sum_probs=30.8

Q ss_pred             CcchhhHHHHHHHHHHHHHHHhcccc--ccCCC-C-cchhHHHHHHHhhHHhhcchhHHHHHHHHHhh
Q 012965          196 GPVAPFDAAACFLAIGMVIILSSWTE--NYGDP-S-ESKDLLTQFRGAAVAIASDEKIALLGAIQSLF  259 (452)
Q Consensus       196 ~~~~~f~~~~~~~~~~~~~~~~~~~~--~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (452)
                      .|+..+.+.+++.++.++.....-.|  ...+. + ++++...+.++...+.+|++..|.........
T Consensus        39 ~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~~k~~k~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~w  106 (267)
T PF07672_consen   39 NWQWILSIFILLIFIPLILYIIFGKNFDIYSPKEKQEKENSTLSKKPSYKSILKEKETWKWILIYGIW  106 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccccccccccccchHHHHHccchHHHHHHHHHHH
Confidence            47777777666665544443322111  01111 1 11111112235667788888888766555443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.16  E-value=27  Score=34.01  Aligned_cols=96  Identities=15%  Similarity=0.180  Sum_probs=56.5

Q ss_pred             hcCCCcchhHHHHHHHHhh-hhhccccccc---cccccCcchHHHHHHHHHHHHH-HH--hc---C-------------c
Q 012965           66 TYGFGKGEIGQLFIAGFGS-SMLFGTIVGS---LADKQGRKRACVTYCLTYILSC-IT--KH---S-------------P  122 (452)
Q Consensus        66 ~~g~s~~~~g~~~~~~~~~-~~l~~~~~G~---l~Dr~Grr~~l~~~~~~~~i~~-l~--~~---~-------------~  122 (452)
                      ..+.+...+-.+.+..... ..+++.+.+.   =.+|+||++.+..+..+..++. +.  ..   +             +
T Consensus       272 ~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~  351 (461)
T KOG3098|consen  272 KLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTP  351 (461)
T ss_pred             hccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCccccccccc
Confidence            3444444443333333322 2344444444   4567899999999988887654 32  11   1             2


Q ss_pred             cHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc--ccccchhhH
Q 012965          123 QYKILMIGRILGGIATSLLFSAFESWLVAEH--NKRGFEQQW  162 (452)
Q Consensus       123 ~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~--~~r~~~~~~  162 (452)
                      ++....+.-++.|++.+........ ++.+.  ++|....+.
T Consensus       352 ~~~~~~ii~~l~G~~D~~~~t~~~~-ii~~~~~~~~~~~fsi  392 (461)
T KOG3098|consen  352 SYYLALIIGFLLGFGDACFNTQRYV-IIALLYPDDRAQAFSL  392 (461)
T ss_pred             chhHHHHHHHHHhhHHHHHHHHHHH-HHHHHhcCchHHHHHH
Confidence            4557778889999999988776633 65554  445554443

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=87.75  E-value=10  Score=35.64  Aligned_cols=137  Identities=13%  Similarity=-0.024  Sum_probs=61.4

Q ss_pred             cchhHHHHHHHHHhhhchhhhhhhhhcccccc-CCCCCchHHHHHHHHHHHHHHhHHHHHHhc-----cCCCCchhHHHH
Q 012965          245 SDEKIALLGAIQSLFEGSMYTFVFLWTPALSP-NDEEIPHGFIFATFMLASMLGSSLASRLMA-----RSPPRVESYMQI  318 (452)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~g~l~d-----r~g~~~~~~~~~  318 (452)
                      ++++-..+.+..-+.++.-++. ..-.|.+++ .+.+.+.--.++. .---.---+++..+.|     |+|||+. ++.-
T Consensus        28 ~d~~~illLl~LYllQGiP~GL-~~~iP~lL~ak~vSyt~~a~fS~-ay~P~sLKllWaPiVDs~y~k~~Grrks-Wvvp  104 (510)
T KOG3574|consen   28 GDRSSILLLLFLYLLQGIPLGL-IGAIPLLLQAKGVSYTSQAIFSF-AYWPFSLKLLWAPIVDSVYSKRFGRRKS-WVVP  104 (510)
T ss_pred             hhhhhHHHHHHHHHHcCCchhH-hhhhHHHhcCCCcchhhhhhhhh-hhhHHHHHHHHHhhhHHHHHHhhccccc-eeee
Confidence            3444334434444455554553 447888777 2222222111111 1111112345666666     9999985 4444


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccch
Q 012965          319 VFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTI  388 (452)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~  388 (452)
                      +..+.+..+..+......-...++..++.    ......+++..+..+.-......+......+++-|-+
T Consensus       105 ~q~llG~~mllLs~~v~~~~g~ng~~p~v----~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgya  170 (510)
T KOG3574|consen  105 CQYLLGLFMLLLSYLVDRGLGGNGGLPNV----VALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYA  170 (510)
T ss_pred             hHHHHHHHHHHHhhCCCcccccCCCCcch----HHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCch
Confidence            44555555554433222111111111111    1222234445555554445566666667666665543

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=86.50  E-value=34  Score=33.39  Aligned_cols=68  Identities=15%  Similarity=0.061  Sum_probs=40.2

Q ss_pred             HHHHHhhhhhhhhHHHHHhhcCCC---cchhHHHHHHHHh-hhhhccccccccccccCcchHHHHHHHHHHH
Q 012965           47 SLMMAGDWLQGPYVYYLYSTYGFG---KGEIGQLFIAGFG-SSMLFGTIVGSLADKQGRKRACVTYCLTYIL  114 (452)
Q Consensus        47 ~~~~~~~~~~~p~l~~i~~~~g~s---~~~~g~~~~~~~~-~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i  114 (452)
                      .+.++.-.+...++-.+.+.+.++   +..+..+-..... .+.+..++.+++.+++.|.+++-..+..+..
T Consensus        33 ~Ll~f~I~~ny~~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~  104 (509)
T COG3202          33 ALLFFCILFNYNLLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLG  104 (509)
T ss_pred             HHHHHHHHHHHHHHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence            333333333333444556666554   3344444444444 3445556789999999999988777665544

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=83.48  E-value=43  Score=32.02  Aligned_cols=86  Identities=17%  Similarity=0.287  Sum_probs=54.4

Q ss_pred             CCchHHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHH
Q 012965          280 EIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFC  359 (452)
Q Consensus       280 ~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (452)
                      +.+.+.+.....+-.++..++..+..+|+..+..  ......+..++++...+....               +.-+++..
T Consensus        58 ~~~t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~R--i~~~~~l~~~g~l~va~~~~v---------------~~~l~Gv~  120 (402)
T PF02487_consen   58 SVSTGAVLLADILPSLLVKLIAPFFIHRVPYWIR--ILICVALSAAGMLLVAFSPSV---------------WVRLLGVV  120 (402)
T ss_pred             cccchHHHHHHHHHHHHHHHHhHhhhhhccchHH--HHHHHHHHHHHHhheeeccch---------------hHHHHHHH
Confidence            3445666666667788888899999998865441  334444444444444332222               46678888


Q ss_pred             HHHHHhhchhhHHHHHHhhcCCcc
Q 012965          360 TFEACVGIFWPSIMKMRSQYIPEE  383 (452)
Q Consensus       360 ~~g~~~~~~~~~~~~~~~~~~p~~  383 (452)
                      +.+++.|..-.....+.. .+|+.
T Consensus       121 las~ssg~GE~tfL~lt~-~y~~~  143 (402)
T PF02487_consen  121 LASLSSGLGEVTFLSLTH-FYGKS  143 (402)
T ss_pred             HHhhhhhhhHHHHHHHHH-hcCcc
Confidence            888888877776666654 55554

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK03612 spermidine synthase; Provisional

Probab=81.77  E-value=33  Score=34.27  Aligned_cols=25  Identities=12%  Similarity=0.174  Sum_probs=16.4

Q ss_pred             HHHHHHHHHhhchhhHHHHHHhhcC
Q 012965          356 LGFCTFEACVGIFWPSIMKMRSQYI  380 (452)
Q Consensus       356 ~~~~~~g~~~~~~~~~~~~~~~~~~  380 (452)
                      ...++.++..|+..|....+..+..
T Consensus       115 ~~~~~~~~l~G~~~Pl~~~~~~~~~  139 (521)
T PRK03612        115 VLVLLIGLLIGMEIPLLMRILQRIR  139 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3445567778877787777666543

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=80.56  E-value=2.9  Score=42.74  Aligned_cols=124  Identities=15%  Similarity=0.158  Sum_probs=79.4

Q ss_pred             cCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCC------------
Q 012965          276 PNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPS------------  340 (452)
Q Consensus       276 ~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  340 (452)
                      ++.++.+.   |.+...+-++..+...+..+...|..|.+  ++..+..+.+++.++..+-....+++            
T Consensus       124 ErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr--~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~  201 (735)
T KOG3626|consen  124 ERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPR--WIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVE  201 (735)
T ss_pred             hhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccc--eeeechhHHHHHHHHHhChHHhcCcchhhhhhhhcccc
Confidence            44455433   56666666888888888888888876555  46666666666655544321111111            


Q ss_pred             -C--------------------cCC----CCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          341 -N--------------------VKS----GGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       341 -~--------------------~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                       +                    +..    .+-.....+++.+.++.|+|....++...+++-|.+.+++.+...|+....
T Consensus       202 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~  281 (735)
T KOG3626|consen  202 NPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSM  281 (735)
T ss_pred             CCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHH
Confidence             0                    000    111113346778899999999999999999999999999888888876653


Q ss_pred             --hhHHHH
Q 012965          396 --LNIFVC  401 (452)
Q Consensus       396 --~~~~~~  401 (452)
                        .|+++|
T Consensus       282 ~~lGPaiG  289 (735)
T KOG3626|consen  282 AILGPAIG  289 (735)
T ss_pred             HHhhhHHH
Confidence              455444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	452
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.97
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.96
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.95
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.95
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.91
2xut_A	524	Proton/peptide symporter family protein; transport	99.89
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.12
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.08
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.03
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.91
2xut_A	524	Proton/peptide symporter family protein; transport	98.86
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.77
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.67

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=2.2e-31  Score=257.34  Aligned_cols=329  Identities=13%  Similarity=0.137  Sum_probs=226.5

Q ss_pred             hhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HH---hcCccHHHHHH
Q 012965           54 WLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT---KHSPQYKILMI  129 (452)
Q Consensus        54 ~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~---~~~~~~~~l~~  129 (452)
                      ....|.+|.+.+++|.|..+.|++.+...+...+++++.|+++||+|||+++..+.++.+++. ++   +++++++.+++
T Consensus        43 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  122 (438)
T 3o7q_A           43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLV  122 (438)
T ss_dssp             HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence            344888899999999999999999999999888999999999999999999999999999875 66   78999999999


Q ss_pred             HHHHHHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCC-------------
Q 012965          130 GRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLG-------------  196 (452)
Q Consensus       130 ~r~l~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~-------------  196 (452)
                      +|++.|++.+...+...+ ++.|..+++++....+ ..+    .+..+|..+++.+++.+.+.....             
T Consensus       123 ~~~l~G~~~~~~~~~~~~-~~~~~~~~~~r~~~~~-~~~----~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~  196 (438)
T 3o7q_A          123 GLFIIAAGLGCLETAANP-FVTVLGPESSGHFRLN-LAQ----TFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQ  196 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHHSSCSTTHHHHHH-HHH----HHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHH
T ss_pred             HHHHHHhhHHHhhhhHHH-HHHHHcCchhHHHHHH-HHH----HHHHHHHHHHHHHHHHHHhcccccccccccccCCcch
Confidence            999999999999988866 8888733333322111 222    234455566666666655222222             


Q ss_pred             -----------cchhhHHHHHHHHHHHHHHH-hccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhh
Q 012965          197 -----------PVAPFDAAACFLAIGMVIIL-SSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMY  264 (452)
Q Consensus       197 -----------~~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (452)
                                 ||+.|.+.+...++...+.. ...||+++++++++ ..++.++..++++|+|+++.......+......
T Consensus       197 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (438)
T 3o7q_A          197 LSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDA-KQGSFSASLSRLARIRHWRWAVLAQFCYVGAQT  275 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCS-STTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc-cccchhhhHHHHHhChHHHHHHHHHHHHHHHHH
Confidence                       78888766655554443333 33455443321211 112334456678888888887766665555544


Q ss_pred             hhhhhhcccc-ccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 012965          265 TFVFLWTPAL-SPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPS  340 (452)
Q Consensus       265 ~~~~~~~p~~-~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (452)
                      . ...+.|.| .++..+.+.   +.......++.+++.++.+++.||++||+  .+..+..+..+...........    
T Consensus       276 ~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~----  348 (438)
T 3o7q_A          276 A-CWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK--VLAAYALIAMALCLISAFAGGH----  348 (438)
T ss_dssp             H-HHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH--HHHHHHHHHHHHHHHHHHCCHH----
T ss_pred             H-HHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHHHHcCCc----
Confidence            3 57888888 777666654   56677778889999999999999999887  3444444444443333322221    


Q ss_pred             CcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh-----hhHHHHHHHhcccc
Q 012965          341 NVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP-----LNIFVCVVLYNVDA  409 (452)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-----~~~~~~~~l~~~~~  409 (452)
                                  .......+.+++.+..+|..+++..|.+|++ ++++.++....     .++.+.+.+.+..+
T Consensus       349 ------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g  409 (438)
T 3o7q_A          349 ------------VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVMTIIGGGIVTPVMGFVSDAAG  409 (438)
T ss_dssp             ------------HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHHHTTHHHHHHHHHHHHHHHHHT
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                        3345557788888888999999999999977 67666554432     33344555555544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.97  E-value=3.4e-30  Score=249.91  Aligned_cols=332  Identities=11%  Similarity=0.080  Sum_probs=226.7

Q ss_pred             hhhHHHHHHHHHHHHhhhhh----hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHH
Q 012965           37 SFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTY  112 (452)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~----~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~  112 (452)
                      +.++..+....+..+...+.    .+.+|.+.+++ .+..+.|++.+...+...++++++|+++||+|||+++..+.++.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~  102 (451)
T 1pw4_A           24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA  102 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence            33444444444444444333    78888888999 99999999999999988899999999999999999999999999


Q ss_pred             HHHH-HHhc----CccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhcc---cccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012965          113 ILSC-ITKH----SPQYKILMIGRILGGIATSLLFSAFESWLVAEHN---KRGFEQQWLSITFSKAIFLGNGLVAILSGL  184 (452)
Q Consensus       113 ~i~~-l~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~~---~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~  184 (452)
                      +++. ++++    ++|++.++++|+++|++.+...+...+ ++.|..   +|++..+.    ..    .+..+|..+++.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~-~i~~~~~~~~r~~~~~~----~~----~~~~~g~~~g~~  173 (451)
T 1pw4_A          103 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGR-TMVHWWSQKERGGIVSV----WN----CAHNVGGGIPPL  173 (451)
T ss_dssp             HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHH-HHHTTCTTTHHHHHHHH----HH----HHHHHHHTSHHH
T ss_pred             HHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHH-HHHHHCCchhhhHHHHH----HH----HHHHHHHHHHHH
Confidence            9986 6688    899999999999999999999988866 888873   33333332    22    234455555556


Q ss_pred             hhhhhhcccCCCcchhhHHHHHHHHHHHHHHHhccccccCCCC-----cc-hh-------H---HHHHHH-hhHHhhcch
Q 012965          185 FGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPS-----ES-KD-------L---LTQFRG-AAVAIASDE  247 (452)
Q Consensus       185 l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~-------~---~~~~~~-~~~~~~~~~  247 (452)
                      +++.+.+..+ +||..|++.+++.++..++.....||++++.+     +. ++       .   ..+.++ ..++.++++
T Consensus       174 ~~~~l~~~~g-~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (451)
T 1pw4_A          174 LFLLGMAWFN-DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNK  252 (451)
T ss_dssp             HHHHHHHHTC-CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCH
T ss_pred             HHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCH
Confidence            6655554333 16777888777666655554444555432210     00 00       0   000001 134567788


Q ss_pred             hHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccC--CCCchhHHHHHHHH
Q 012965          248 KIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARS--PPRVESYMQIVFVV  322 (452)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~--g~~~~~~~~~~~~~  322 (452)
                      +++...+...+.....+. ...+.|.+.++..+.+.   +.......++.+++.++.+++.||+  +||+  .+..+..+
T Consensus       253 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~--~~~~~~~~  329 (451)
T 1pw4_A          253 LLWYIAIANVFVYLLRYG-ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG--ATGVFFMT  329 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH--HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch--hHHHHHHH
Confidence            888777666666655444 57889999988777655   5677777889999999999999999  7776  23333333


Q ss_pred             HH-HHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          323 SS-VSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       323 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      .. +.+....   ...+      .    ..+......++.|++.+...+..+.+..|.+|++.|++++|+.+..
T Consensus       330 ~~~~~~~~~~---~~~~------~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  390 (451)
T 1pw4_A          330 LVTIATIVYW---MNPA------G----NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLF  390 (451)
T ss_dssp             HHHHHHHHTT---SCCT------T----CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH---Hhcc------c----CHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHH
Confidence            33 2222211   1100      0    1135566677788888888888899999999999999999887764

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.96  E-value=1.3e-27  Score=234.31  Aligned_cols=339  Identities=14%  Similarity=0.079  Sum_probs=196.2

Q ss_pred             hhHHHHHHHHHHHHhhhhh----hhhHHHHHhhcCCC--------cchhHHHHHHHHhhhhhccccccccccccCcchHH
Q 012965           38 FKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFG--------KGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRAC  105 (452)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~----~p~l~~i~~~~g~s--------~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l  105 (452)
                      +.+.+.++..+..+.+++|    ++.+|.+.++++.+        ..+.|++.+..+++..++++++|+++||+|||+++
T Consensus         9 y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l   88 (491)
T 4gc0_A            9 YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL   88 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            3333434444444445554    55667777666332        33456777777777778888999999999999999


Q ss_pred             HHHHHHHHHHH-HHh------------------cCccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhcc---cccchhhHH
Q 012965          106 VTYCLTYILSC-ITK------------------HSPQYKILMIGRILGGIATSLLFSAFESWLVAEHN---KRGFEQQWL  163 (452)
Q Consensus       106 ~~~~~~~~i~~-l~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~~---~r~~~~~~~  163 (452)
                      ..+.+++.++. +++                  +++|++.++++|+++|++.|...+.... +++|..   +|++..+. 
T Consensus        89 ~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~-~i~E~~p~~~rg~~~~~-  166 (491)
T 4gc0_A           89 KIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPM-YIAELAPAHIRGKLVSF-  166 (491)
T ss_dssp             HHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTSCGGGHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCCHHhhhhhHHh-
Confidence            99999999875 556                  4789999999999999999999998855 999984   34443332 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhh--cccCCCcchhhHHHHHHHHHHHHHHHhccccccC------CCCcchhHHHH
Q 012965          164 SITFSKAIFLGNGLVAILSGLFGNLLV--DSFSLGPVAPFDAAACFLAIGMVIILSSWTENYG------DPSESKDLLTQ  235 (452)
Q Consensus       164 ~~~~~~~~~~g~~ig~~~~~~l~~~l~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  235 (452)
                         .+.....|...+..++........  ....+.||..+....+..++..... ...||.++      +++++++..++
T Consensus       167 ---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~peSp~~L~~~~~~~~a~~~l~~  242 (491)
T 4gc0_A          167 ---NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLL-YTVPESPRWLMSRGKQEQAEGILRK  242 (491)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHG-GGSCCCHHHHHHTTCHHHHHHHHHH
T ss_pred             ---hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhh-hcCCCChHHHHHcCchhHHHHhHHH
Confidence               232333333333333222221110  0112456766666655555444333 36677432      22221111111


Q ss_pred             HHH----------------------hhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch--HHHHHHHH
Q 012965          236 FRG----------------------AAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH--GFIFATFM  291 (452)
Q Consensus       236 ~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~~~~~~  291 (452)
                      ...                      ......+.++.........+.+...+.....|.|.+.++....+.  ........
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (491)
T 4gc0_A          243 IMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVG  322 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred             hcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHH
Confidence            000                      001112223333333444444444444455666665543322211  34445566


Q ss_pred             HHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhch-hh
Q 012965          292 LASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIF-WP  370 (452)
Q Consensus       292 i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~  370 (452)
                      +..+++.++.+++.||+|||+.  +..+.....+++...........+           .+...+...++..+++.. .|
T Consensus       323 ~~~~~~~~~~~~l~dr~Grr~~--~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~  389 (491)
T 4gc0_A          323 VINLTFTVLAIMTVDKFGRKPL--QIIGALGMAIGMFSLGTAFYTQAP-----------GIVALLSMLFYVAAFAMSWGP  389 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHCSHHH--HHHHHHHHHHHHHHHHHHHHTTCC-----------HHHHHHHHHHHHHHHHTTTTH
T ss_pred             HHHHHHHHHHHHHHHhhcCcch--hccchHHHHHHHHHHHHHHhcccc-----------hHHHHHHHHHHHHHHHhHHHH
Confidence            7889999999999999999983  444444444444443333222111           123333344444444433 37


Q ss_pred             HHHHHHhhcCCcccccchhhhhhhh
Q 012965          371 SIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       371 ~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      ..+.+.+|.+|++.|+++.|+.+..
T Consensus       390 ~~~~~~~E~fPt~~R~~~~g~~~~~  414 (491)
T 4gc0_A          390 VCWVLLSEIFPNAIRGKALAIAVAA  414 (491)
T ss_dssp             HHHHHHHHSSCTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHhHHHHHHHHHHHH
Confidence            7889999999999999999987654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.95  E-value=1.6e-26  Score=226.70  Aligned_cols=315  Identities=16%  Similarity=0.089  Sum_probs=194.3

Q ss_pred             cCCCcchhHHHHHHHHhhhhhccccccccccc-cCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHHhHhhhhhhh
Q 012965           67 YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSA  144 (452)
Q Consensus        67 ~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr-~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~  144 (452)
                      +|.|..+.|++.+...+...+++++.|+++|| +|||+++..+.++.+++. ++++++|++.++++|+++|++.+...+.
T Consensus        49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~  128 (491)
T 4aps_A           49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN  128 (491)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence            99999999999999988888999999999999 899999999999999986 6789999999999999999999999888


Q ss_pred             hhhhhhhhccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHhcccc--
Q 012965          145 FESWLVAEHNK-RGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTE--  221 (452)
Q Consensus       145 ~~~~~i~e~~~-r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~--  221 (452)
                      ..+ ++.|..+ +.+..+......+    .+..+|..+++.+++.+.+.  ++||..|.+.++..++..+......++  
T Consensus       129 ~~~-~~~~~~~~~~~~r~~~~~~~~----~~~~~g~~~~~~~~~~l~~~--~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  201 (491)
T 4aps_A          129 VST-LVGTLYDEHDRRRDAGFSIFV----FGINLGAFIAPLIVGAAQEA--AGYHVAFSLAAIGMFIGLLVYYFGGKKTL  201 (491)
T ss_dssp             HHH-HHHHHSSSCTTHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHH-HHHHHcCcccccceeeehHHH----HHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence            866 8888622 2211111111122    33445666666666666654  456777877765555444333311111  


Q ss_pred             -cc-CCCCc--chhHHHHHHHh---------------------------------------------h-------HHhhc
Q 012965          222 -NY-GDPSE--SKDLLTQFRGA---------------------------------------------A-------VAIAS  245 (452)
Q Consensus       222 -~~-~~~~~--~~~~~~~~~~~---------------------------------------------~-------~~~~~  245 (452)
                       ++ +++++  .++..++..+.                                             .       .+..+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (491)
T 4aps_A          202 DPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLR  281 (491)
T ss_dssp             CSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred             cccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence             11 11111  11111110000                                             0       00011


Q ss_pred             chhHHHHHHHHHhhhchhhhhhhhhccccccCCCCC---chHHHHHHHHHHHHHHhHHHHHHhccCCCCchh---HHHHH
Q 012965          246 DEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEI---PHGFIFATFMLASMLGSSLASRLMARSPPRVES---YMQIV  319 (452)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~---~~~~~  319 (452)
                      ....+.......+.... +.....+.|.+.++..+.   +.+.......+..+++.++.+++.||++||+..   .+..+
T Consensus       282 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~  360 (491)
T 4aps_A          282 VVSYIPLFIAAVLFWAI-EEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVG  360 (491)
T ss_dssp             CTTHHHHHHHHHHHHHH-HGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHH
Confidence            11122222222222222 222345556665543333   347777778888888999999999999988531   12233


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          320 FVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      ..+.++++...........++      .....+......++.+++.+...+..+++..|.+|++.|+++.|+.+..
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  430 (491)
T 4aps_A          361 LMFAGLSFLLMAIPGALYGTS------GKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLS  430 (491)
T ss_dssp             HHHHHHHHTTTHHHHHHCCCC------TTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCC------CCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            444444433333322111100      0111235567778888999988899999999999999999999988765

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.95  E-value=8.4e-28  Score=227.38  Aligned_cols=312  Identities=13%  Similarity=0.067  Sum_probs=220.6

Q ss_pred             HHhhhhhhhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHH
Q 012965           50 MAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILM  128 (452)
Q Consensus        50 ~~~~~~~~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~  128 (452)
                      ........|.+|.+.+++|.|+.+.|++.+...+...+++++.|+++||+|||+++..+..+.+++. +.++++|++.++
T Consensus        13 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~   92 (375)
T 2gfp_A           13 QMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLI   92 (375)
T ss_dssp             HHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            3344555888889999999999999999999999888999999999999999999999999999876 668889999999


Q ss_pred             HHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHH
Q 012965          129 IGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAA  205 (452)
Q Consensus       129 ~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~  205 (452)
                      +.|+++|++.+...+...+ ++.|.   ++|++..+..+.        +..+|..+++.+++.+.++  ++||..|.+.+
T Consensus        93 ~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~g~~~~~~~~~~l~~~--~~~~~~~~~~~  161 (375)
T 2gfp_A           93 AASAMQGMGTGVGGVMART-LPRDLYERTQLRHANSLLNM--------GILVSPLLAPLIGGLLDTM--WNWRACYLFLL  161 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHHHHHTSSCCSHHHHHHH--------HHHHHHHHHHHHHHHSSCH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhHHH-HHHHHCCHHHHHHHHHHHHH--------HHHHHHHhhHHHHHHHHHh--ccHHHHHHHHH
Confidence            9999999999999888866 77776   455665543322        3445556666666666643  35778888777


Q ss_pred             HHHHHHHHHHHhccccccCCCCcchhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch--
Q 012965          206 CFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH--  283 (452)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--  283 (452)
                      +..++..+......||++++++++++    .+++.++.+|+|+++.......+....... ...+.|.+.++..+.+.  
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~  236 (375)
T 2gfp_A          162 VLCAGVTFSMARWMPETRPVDAPRTR----LLTSYKTLFGNSGFNCYLLMLIGGLAGIAA-FEACSGVLMGAVLGLSSMT  236 (375)
T ss_dssp             HHHHHHHCCCCCSSCCCSTTTCCCCC----TTTCSTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCSCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcccCCCCccccc----HHHHHHHHhcCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHH
Confidence            76666554344456665544332211    123445667778877776666655555444 57889998877555544  


Q ss_pred             -HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHH-HHHHHH--HHHHHhhhcCCCCcCCCCcccchhhHHHHHH
Q 012965          284 -GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVV-SSVSLL--LPIVTSFLVAPSNVKSGGISFSGSLQLLGFC  359 (452)
Q Consensus       284 -~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (452)
                       +.......++.+++..+.+++.||.++ +   ...+... ......  ........             ..+...+...
T Consensus       237 ~g~~~~~~~~~~~~~~~~~~~l~~r~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~  299 (375)
T 2gfp_A          237 VSILFILPIPAAFFGAWFAGRPNKRFST-L---MWQSVICCLLAGLLMWIPDWFGVM-------------NVWTLLVPAA  299 (375)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHTTTTHHHH-H---HHHHHHHHHHTSSSSSHHHHHHHH-------------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHhhhccc-------------cHHHHHHHHH
Confidence             566677778888899999999998865 2   2222222 111111  11111111             0134556777


Q ss_pred             HHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          360 TFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       360 ~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                      +.+++.+...+...++..|..| ++|+++.|+.+..
T Consensus       300 l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~  334 (375)
T 2gfp_A          300 LFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGL  334 (375)
T ss_dssp             HHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHH
Confidence            8888999889999999999998 7899999988764

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.91  E-value=1.6e-24  Score=207.73  Aligned_cols=351  Identities=13%  Similarity=0.071  Sum_probs=189.6

Q ss_pred             HHHHhhhhhhhhHHHHH-hhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHH---HH-HhcCc
Q 012965           48 LMMAGDWLQGPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILS---CI-TKHSP  122 (452)
Q Consensus        48 ~~~~~~~~~~p~l~~i~-~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~---~l-~~~~~  122 (452)
                      ..........|++|... +++|.|+.+.|.+.+...+...++++++|+++||+||||++..+..+.++.   .. ..+.+
T Consensus        18 ~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~   97 (417)
T 2cfq_A           18 FYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP   97 (417)
T ss_dssp             HHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444467776654 569999999999999988888899999999999999999999988776542   11 12222


Q ss_pred             cHH-HHHHHHHHHHhHhhhhhhhhhh---hhhhhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCc
Q 012965          123 QYK-ILMIGRILGGIATSLLFSAFES---WLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGP  197 (452)
Q Consensus       123 ~~~-~l~~~r~l~G~~~~~~~~~~~~---~~i~e~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~  197 (452)
                      ... .+...+.+.|++.+...+...+   .+..|. ++++...+..+        .+..+|..++|.+++.+.+   ++|
T Consensus        98 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~g~~~~~~l~~~l~~---~~~  166 (417)
T 2cfq_A           98 LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRAR--------MFGCVGWALGASIVGIMFT---INN  166 (417)
T ss_dssp             HHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHS--------SSTTTHHHHHHHHHHHHHH---HCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHH--------HHHHHHHHHHHHHHHHHHH---hch
Confidence            111 1234455555444433332222   123322 22232222211        1233455566666666554   356


Q ss_pred             chhhHHHHHHHHHHHHHHHhccccccCCC--Ccc--hhHHHHHHHhhHHhhcchhHHHHHHHHHhhhchhhhhhhhhccc
Q 012965          198 VAPFDAAACFLAIGMVIILSSWTENYGDP--SES--KDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPA  273 (452)
Q Consensus       198 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  273 (452)
                      +..|++.++..++.........||++++.  +++  ++..+...++.++.+++|+++............ +.....+.|.
T Consensus       167 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  245 (417)
T 2cfq_A          167 QFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT-YDVFDQQFAN  245 (417)
T ss_dssp             HHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHH-HHHHHHHHHH
Confidence            77777665554333333222223321110  110  000001112344567788877655443332222 2223445666


Q ss_pred             cccCCCCCc---h---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCc
Q 012965          274 LSPNDEEIP---H---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGI  347 (452)
Q Consensus       274 ~~~~~~~~~---~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (452)
                      |..+..+..   .   +.......++.+++.++.++++||+|||+.  +..+..+.++.....   ...        ++ 
T Consensus       246 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~--l~~~~~~~~~~~~~~---~~~--------~~-  311 (417)
T 2cfq_A          246 FFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA--LLLAGTIMSVRIIGS---SFA--------TS-  311 (417)
T ss_dssp             HHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH--HHHHHHHHHHHHHHH---TTC--------CS-
T ss_pred             HHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH--HHHHHHHHHHHHHHH---HHh--------cc-
Confidence            554333321   1   455566667788899999999999998872  433443333332221   111        00 


Q ss_pred             ccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhh-hhh------hhHHHHHHHhccccCCchHHHHHHH
Q 012965          348 SFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFF-RIP------LNIFVCVVLYNVDAFPITVMFGMCS  420 (452)
Q Consensus       348 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~------~~~~~~~~l~~~~~~~~~~~~~~~~  420 (452)
                         .+...+...+.+++.+...+..+.+..|.+|++.|+++.+.. +..      .++.+++.+.+.  .++...+...+
T Consensus       312 ---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~--~g~~~~f~~~~  386 (417)
T 2cfq_A          312 ---ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES--IGFQGAYLVLG  386 (417)
T ss_dssp             ---HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH--SHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh--cCcHHHHHHHH
Confidence               023344445556666666677788999999999999988773 432      233444555554  23444555555


Q ss_pred             HHHHHHHHH
Q 012965          421 IFLLVASVL  429 (452)
Q Consensus       421 ~~~~~~~~~  429 (452)
                      ++.++..+.
T Consensus       387 ~~~l~~~~~  395 (417)
T 2cfq_A          387 LVALGFTLI  395 (417)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444333

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.89  E-value=3.6e-22  Score=197.32  Aligned_cols=167  Identities=11%  Similarity=0.165  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHhhhhhhhhHH-HHHhhcC------CCcchhHHHHHHHHhhhhhcccccccccccc-CcchHHHHHHHHHH
Q 012965           42 YLLVYSLMMAGDWLQGPYVY-YLYSTYG------FGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCLTYI  113 (452)
Q Consensus        42 ~~~~~~~~~~~~~~~~p~l~-~i~~~~g------~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~-Grr~~l~~~~~~~~  113 (452)
                      .....++.........+.++ .+.+++|      .++.+.|++.+...+...+++++.|+++||+ |||+++..+.++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~   96 (524)
T 2xut_A           17 IIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYC   96 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            33333333344333334443 4557889      9999999999998888888999999999999 99999999999998


Q ss_pred             HHH-HHhcCc-cHHHHHHHHHHHHhHhhhhhhhhhhhhhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012965          114 LSC-ITKHSP-QYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL  188 (452)
Q Consensus       114 i~~-l~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~  188 (452)
                      ++. ++++++ +++.+++.|++.|++.+...+...+ ++.|.   ++|++..+..+.     ...+..+|..+++.+++.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~-----~~~~~~~g~~~g~~~~~~  170 (524)
T 2xut_A           97 VGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSS-FMGDQFDQSNKSLAQKAFDM-----FYFTINFGSFFASLSMPL  170 (524)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHH-HHHHTCSTTTTTHHHHHHHH-----HHHHHHHHHHHHHHTSTH
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHH-HHHHHcCccchHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence            876 668888 9999999999999999999888866 78887   333333332111     223455666777777777


Q ss_pred             hhcccCCCcchhhHHHHHHHHHHHHHHH
Q 012965          189 LVDSFSLGPVAPFDAAACFLAIGMVIIL  216 (452)
Q Consensus       189 l~~~~~~~~~~~f~~~~~~~~~~~~~~~  216 (452)
                      +.+.  ++|+..|.+.++..++..+...
T Consensus       171 l~~~--~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          171 LLKN--FGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HHHT--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hhcc--ccHHHHHHHHHHHHHHHHHHHH
Confidence            7653  4677888877766665544443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.12  E-value=2.1e-09  Score=103.46  Aligned_cols=152  Identities=12%  Similarity=0.023  Sum_probs=102.8

Q ss_pred             hhhHHHHHhh-cCCCcchhHHHHHHHHhhhhhcccccccccccc--CcchHHHHHHHHHH-HHH-HHhcC--ccHHHHHH
Q 012965           57 GPYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ--GRKRACVTYCLTYI-LSC-ITKHS--PQYKILMI  129 (452)
Q Consensus        57 ~p~l~~i~~~-~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~--Grr~~l~~~~~~~~-i~~-l~~~~--~~~~~l~~  129 (452)
                      ..++|...++ +|.+..+.+.+.+...+...++.++.|++.||+  |||+.+..+..+.. ++. +..+.  ++.+.+.+
T Consensus       272 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (451)
T 1pw4_A          272 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMI  351 (451)
T ss_dssp             HHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence            4555666665 899999999888888887888888999999999  99999988887776 555 44554  47788888


Q ss_pred             HHHHHHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhcccCCCcchhhHHHHHHH
Q 012965          130 GRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGL-VAILSGLFGNLLVDSFSLGPVAPFDAAACFL  208 (452)
Q Consensus       130 ~r~l~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~i-g~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~  208 (452)
                      ..++.|++.+...+.... ++.|..+++.+..    ..+.... ...+ |..+++.+.+.+.+..  +++..|.+.+++.
T Consensus       352 ~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~g~----~~~~~~~-~~~~~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~  423 (451)
T 1pw4_A          352 CMIVIGFLIYGPVMLIGL-HALELAPKKAAGT----AAGFTGL-FGYLGGSVAASAIVGYTVDFF--GWDGGFMVMIGGS  423 (451)
T ss_dssp             HHHHHHHHHTHHHHHHHH-HHHHTSCTTHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHSS--CSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhchHHHHHH-HHHHHhchhhhhh----HHHHHHH-HHHHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHH
Confidence            889999988888776645 6677633222222    1121111 2234 5566666766666544  4566777766666


Q ss_pred             HHHHHHHH
Q 012965          209 AIGMVIIL  216 (452)
Q Consensus       209 ~~~~~~~~  216 (452)
                      ++..+...
T Consensus       424 ~~~~~~~~  431 (451)
T 1pw4_A          424 ILAVILLI  431 (451)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55544443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.08  E-value=1.2e-09  Score=106.40  Aligned_cols=156  Identities=12%  Similarity=0.029  Sum_probs=99.5

Q ss_pred             HHHHHHHHHhhhchhhhhhhhhccccccCC-----CCCch---HHHHHHHHHHHHHHhHHHHHHhcc-CCCCchhHHHHH
Q 012965          249 IALLGAIQSLFEGSMYTFVFLWTPALSPND-----EEIPH---GFIFATFMLASMLGSSLASRLMAR-SPPRVESYMQIV  319 (452)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr-~g~~~~~~~~~~  319 (452)
                      .+.......+.....+. ...+.+.|.++.     ++.+.   +...+...++..++.++.|+++|| +|||+  .+..+
T Consensus        15 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~--~~~~~   91 (491)
T 4aps_A           15 LSTLFMTEMWERFSYYG-MRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP--AVFWG   91 (491)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH--HHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH--HHHHH
Confidence            33333333333334333 456677776654     66655   677788889999999999999999 89988  35555


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCccc--ccchhhhhhhh--
Q 012965          320 FVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEA--RSTIMNFFRIP--  395 (452)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~--r~~~~g~~~~~--  395 (452)
                      ..+..++........+.               +...+..++.|++.+...+...+++.|.+|+++  |+++++..+..  
T Consensus        92 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  156 (491)
T 4aps_A           92 GVLIMLGHIVLALPFGA---------------SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGIN  156 (491)
T ss_dssp             HHHHHHHHHHHHSCCST---------------THHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhH---------------HHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHH
Confidence            55544444443221111               366777888999999999999999999999988  66677665543  


Q ss_pred             ----hhHHHHHHHhccccCCchHHHHHHHHHHH
Q 012965          396 ----LNIFVCVVLYNVDAFPITVMFGMCSIFLL  424 (452)
Q Consensus       396 ----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  424 (452)
                          .++.+++.+.+.  .++...+...++..+
T Consensus       157 ~g~~~~~~~~~~l~~~--~g~~~~f~~~~~~~~  187 (491)
T 4aps_A          157 LGAFIAPLIVGAAQEA--AGYHVAFSLAAIGMF  187 (491)
T ss_dssp             HHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHH
Confidence                233444555554  334444444444333

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.03  E-value=1.2e-08  Score=97.67  Aligned_cols=145  Identities=12%  Similarity=-0.002  Sum_probs=97.7

Q ss_pred             hhhHHHH-Hh-hcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHH
Q 012965           57 GPYVYYL-YS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRIL  133 (452)
Q Consensus        57 ~p~l~~i-~~-~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l  133 (452)
                      ...+|.. .+ .+|.+..+.+...+...+...++.++.|+++||+|||+.+..+.++.+++. +..+.++.+.+... ++
T Consensus       278 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  356 (438)
T 3o7q_A          278 WSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TL  356 (438)
T ss_dssp             HHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HH
T ss_pred             HHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HH
Confidence            3444555 54 459999999988888888788888899999999999999999998888876 55777777655444 88


Q ss_pred             HHhHhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHH
Q 012965          134 GGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIG  211 (452)
Q Consensus       134 ~G~~~~~~~~~~~~~~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~  211 (452)
                      .|++.+...+...+ +..|..++.+..  .   .. ... ...+|..++|.+.+.+.+..+ +++..|.+.++..++.
T Consensus       357 ~g~~~~~~~~~~~~-~~~~~~~~~~~~--~---~~-~~~-~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~  425 (438)
T 3o7q_A          357 CSAFMSIQYPTIFS-LGIKNLGQDTKY--G---SS-FIV-MTIIGGGIVTPVMGFVSDAAG-NIPTAELIPALCFAVI  425 (438)
T ss_dssp             HHHHHTTHHHHHHH-HHHSSCGGGHHH--H---HH-HHH-HTTHHHHHHHHHHHHHHHHHT-SSGGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HHHhhccccccc--h---hh-HHH-HHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHH
Confidence            88998888887755 555552222111  1   11 111 233677777777777776554 1455666555444433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.91  E-value=4e-09  Score=100.51  Aligned_cols=144  Identities=10%  Similarity=0.030  Sum_probs=93.3

Q ss_pred             cchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHHhHhhhhhhhhhhhh
Q 012965           71 KGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWL  149 (452)
Q Consensus        71 ~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~  149 (452)
                      ..+.+...+...+...++.++.|+++||+|||+++..+..+.+++. +.++.++.+.+++..++.+++.+...+.... +
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~  336 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK-Y  336 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH-H
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            3445666565555556667789999999999999998888887765 5577888888888888888887666555544 6


Q ss_pred             hhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHhcccc
Q 012965          150 VAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTE  221 (452)
Q Consensus       150 i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  221 (452)
                      ++|..+.+.+..    ..+.....+..+|..++|.+++.+.+..  ++...|...+++.++..+......||
T Consensus       337 ~~~~~p~~~~g~----~~g~~~~~~~~lg~~~gp~l~G~l~~~~--g~~~~f~~~~~~~l~~~~~~~~~~~~  402 (417)
T 2cfq_A          337 ITSQFEVRFSAT----IYLVCFCFFKQLAMIFMSVLAGNMYESI--GFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHSCHHHHHH----HHHHHHTTTHHHHHHHHTHHHHTHHHHS--HHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred             HHHHCCHHHHHH----HHHHHHHHHHhHHHHHhhhhHHHHHHhc--CcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            777633332222    1221123334466677777777766533  45566777776666665554444444

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.86  E-value=1.6e-08  Score=99.43  Aligned_cols=126  Identities=10%  Similarity=0.023  Sum_probs=86.4

Q ss_pred             hHHHHHHHHHhhhchhhhhhhhhccccccCCCC------Cch---HHHHHHHHHHHHHHhHHHHHHhccC-CCCchhHHH
Q 012965          248 KIALLGAIQSLFEGSMYTFVFLWTPALSPNDEE------IPH---GFIFATFMLASMLGSSLASRLMARS-PPRVESYMQ  317 (452)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~------~~~---~~~~~~~~i~~~~~~~~~g~l~dr~-g~~~~~~~~  317 (452)
                      +++.......+.....+. ...+.|.|+++..+      .+.   +...+...++..++.++.|+++||+ |||+  .+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~--~~~   89 (524)
T 2xut_A           13 QIPYIIASEACERFSFYG-MRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN--TIL   89 (524)
T ss_dssp             CCTHHHHHHHHHHHHHHH-HHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH--HHH
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--HHH
Confidence            444444444444444343 45666666655444      433   6778888899999999999999999 9988  344


Q ss_pred             HHHHHHHHHHHHHHHHh-hhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhh
Q 012965          318 IVFVVSSVSLLLPIVTS-FLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNF  391 (452)
Q Consensus       318 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~  391 (452)
                      .+..+..++........ ..               +..++..++.|++.+...+...+++.|.+|+++|++..+.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  149 (524)
T 2xut_A           90 WLSLIYCVGHAFLAIFEHSV---------------QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA  149 (524)
T ss_dssp             HHHHHHHHHHHHHHHTSSCH---------------HHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccH---------------HHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHH
Confidence            55444444444433322 11               3566778888999999999999999999999999766554

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.77  E-value=3.1e-08  Score=92.75  Aligned_cols=110  Identities=8%  Similarity=0.073  Sum_probs=82.6

Q ss_pred             hhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCC
Q 012965          268 FLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKS  344 (452)
Q Consensus       268 ~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (452)
                      ....|.+.+ +.+.+.   +...+...++..++.++.|+++||+|||+.  +..+.....+.........+.        
T Consensus        20 ~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~--~~~~~~~~~~~~~~~~~~~~~--------   88 (375)
T 2gfp_A           20 IPAIADMAR-DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPV--ILVGMSIFMLATLVAVTTSSL--------   88 (375)
T ss_dssp             HHHHHHHHT-TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCC--CHHHHHHHHHHHHHHHHHHHH--------
T ss_pred             hhhhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHHHHhccH--------
Confidence            444555444 345544   677788889999999999999999999984  555555555555544443333        


Q ss_pred             CCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          345 GGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       345 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                             +...+..++.|++.+...+...++..|.+|+++|+++++..+..
T Consensus        89 -------~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (375)
T 2gfp_A           89 -------TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMG  132 (375)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHH
Confidence                   46677788889999988999999999999999999999887764

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.67  E-value=1e-07  Score=92.65  Aligned_cols=166  Identities=14%  Similarity=0.012  Sum_probs=91.2

Q ss_pred             hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHh----cCccHHHHHHHH
Q 012965           57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK----HSPQYKILMIGR  131 (452)
Q Consensus        57 ~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~----~~~~~~~l~~~r  131 (452)
                      ..+.+.+.++.+.+..+.........+...+..++.+.+.||+|||+.++.+.....++. ..+    ...+.+..++.-
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  376 (491)
T 4gc0_A          297 LYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSM  376 (491)
T ss_dssp             HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence            344566777788777666555445555566777789999999999999998888777653 221    122222222222


Q ss_pred             HHHHhHhhh-hhhhhhhhhhhhcc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHH
Q 012965          132 ILGGIATSL-LFSAFESWLVAEHN---KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACF  207 (452)
Q Consensus       132 ~l~G~~~~~-~~~~~~~~~i~e~~---~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~  207 (452)
                      .+...+.+. ..+.. ..+.+|.-   .|+...+..    +....++..+++.+.|.+.........+++...|++.+++
T Consensus       377 ~~~~~~~~~~~~~~~-~~~~~E~fPt~~R~~~~g~~----~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~  451 (491)
T 4gc0_A          377 LFYVAAFAMSWGPVC-WVLLSEIFPNAIRGKALAIA----VAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCM  451 (491)
T ss_dssp             HHHHHHHHTTTTHHH-HHHHHHSSCTTTHHHHHHHH----HHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHH-HHHHHHhCCHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            222222222 22333 33678873   344433322    2122233334444444332211111223444667777777


Q ss_pred             HHHHHHHHHhccccccCCCC
Q 012965          208 LAIGMVIILSSWTENYGDPS  227 (452)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~  227 (452)
                      .++..++.++..||++++.-
T Consensus       452 ~~~~~i~~~~~~PETkg~tL  471 (491)
T 4gc0_A          452 GVLAALFMWKFVPETKGKTL  471 (491)
T ss_dssp             HHHHHHHHHHHCCCCTTCCH
T ss_pred             HHHHHHHHHheecCCCCCCH
Confidence            77777777778999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	452
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	5e-04
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	0.002

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (91), Expect = 5e-04
 Identities = 36/393 (9%), Positives = 98/393 (24%), Gaps = 18/393 (4%)

Query: 44  LVYSLMMAGDWLQGPYV-YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRK 102
           L +           P+   +L+      K + G +F A    S+LF  + G L+DK G +
Sbjct: 14  LFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLR 73

Query: 103 RACVTYCLTY-ILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQ 161
           +  +       ++           +L    ++G I   +      +           +  
Sbjct: 74  KYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS 133

Query: 162 WLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTE 221
             S        +   +   L      ++    +          A  LA+ +    +    
Sbjct: 134 RRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPS 193

Query: 222 NYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEI 281
           +    +      + F          +      ++  +     Y            +    
Sbjct: 194 SATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFAT 253

Query: 282 PHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSN 341
                     + +M     AS +            +   +++   + + I+ S     + 
Sbjct: 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSAL 313

Query: 342 VKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMN-----FFRIPL 396
                 +                V        K  +        +TI       F ++ +
Sbjct: 314 EVVILKTLHM-----------FEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAM 362

Query: 397 NIFVCVVLYNVDAFPITVMFGMCSIFLLVASVL 429
                +     ++      + +  +  L  +++
Sbjct: 363 IFMSVLAGNMYESIGFQGAYLVLGLVALGFTLI 395

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 47/380 (12%), Positives = 105/380 (27%), Gaps = 24/380 (6%)

Query: 67  YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKH-----S 121
            GF +G++G        +      I+GS++D+   +       +      +        +
Sbjct: 54  QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT 113

Query: 122 PQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAIL 181
               ++ +   L G    + +      +V   ++   E+  +   ++ A  +G G+  +L
Sbjct: 114 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ--KERGGIVSVWNCAHNVGGGIPPLL 171

Query: 182 SGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAV 241
             L      D  +   +  F A    L    ++  +  +       E K+          
Sbjct: 172 FLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKA 231

Query: 242 AIASDEKIALLGAIQS-------LFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLAS 294
                 K   +  +                  +       SP   +    F       A 
Sbjct: 232 EQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAY 291

Query: 295 MLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQ 354
            L                +   +     + V  +  +  + +V   N           + 
Sbjct: 292 FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMI 351

Query: 355 LLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVL-----YNVDA 409
           ++GF      +      I     +  P++A  T   F  +   +   V       Y VD 
Sbjct: 352 VIGF-----LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF 406

Query: 410 FPITVMFGMCSIFLLVASVL 429
           F     F +     ++A +L
Sbjct: 407 FGWDGGFMVMIGGSILAVIL 426

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	452
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.97
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.92
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.09
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.07

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.2e-30  Score=250.34  Aligned_cols=354  Identities=11%  Similarity=0.053  Sum_probs=226.2

Q ss_pred             CccchhhHHHHHHHHHHHHhhhhh----hhhHHHHHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHH
Q 012965           33 SAFNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTY  108 (452)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~----~p~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~  108 (452)
                      +.+++++|..+..+++......++    +...|.+ +|+|+|.+|+|++.+...+...+++++.|+++||+|||+++..+
T Consensus        17 ~~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~-~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~   95 (447)
T d1pw4a_          17 PTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG   95 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            345667777777776666665554    4444444 57899999999999999988889999999999999999999999


Q ss_pred             HHHHHHHH-HHhcC----ccHHHHHHHHHHHHhHhhhhhhhhhhhhhhhcc---cccchhhHHHHHHHHHHHHHHHHHHH
Q 012965          109 CLTYILSC-ITKHS----PQYKILMIGRILGGIATSLLFSAFESWLVAEHN---KRGFEQQWLSITFSKAIFLGNGLVAI  180 (452)
Q Consensus       109 ~~~~~i~~-l~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~~---~r~~~~~~~~~~~~~~~~~g~~ig~~  180 (452)
                      .++.+++. +++++    ++++.+++.|++.|++.+...+.... ++.|+.   +|++..+.    .+....    +|..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~i~~~~~~~~r~~~~~~----~~~~~~----~g~~  166 (447)
T d1pw4a_          96 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGR-TMVHWWSQKERGGIVSV----WNCAHN----VGGG  166 (447)
T ss_dssp             HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHH-HHHTTCTTTHHHHHHHH----HHHHHH----HHHT
T ss_pred             HHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHH-HHHHHHHhhcccccccc----cccccc----hhhh
Confidence            99998875 55554    57889999999999999999888866 888873   34443332    232333    4444


Q ss_pred             HHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHhccccccCCC-----Cc-----chhHHH-------HHHHhhHHh
Q 012965          181 LSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDP-----SE-----SKDLLT-------QFRGAAVAI  243 (452)
Q Consensus       181 ~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~-------~~~~~~~~~  243 (452)
                      +++.++....+.. .+|+..+.+.+.+.++..++.....++.+++.     ++     .++..+       ..+...+..
T Consensus       167 i~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (447)
T d1pw4a_         167 IPPLLFLLGMAWF-NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYV  245 (447)
T ss_dssp             SHHHHHHHHHHHT-CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHT
T ss_pred             hhhhhhhhHhhhh-hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHH
Confidence            4444444433322 35666677766655555444443333321110     00     000000       011123456


Q ss_pred             hcchhHHHHHHHHHhhhchhhhhhhhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHH
Q 012965          244 ASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVF  320 (452)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~  320 (452)
                      ++++..+.......+.....+. ...+.|.++.+..+.+.   +.......+..+++.++.+++.||.+|++....  ..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~  322 (447)
T d1pw4a_         246 LPNKLLWYIAIANVFVYLLRYG-ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT--GV  322 (447)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHH-HHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH--HH
T ss_pred             HcCchHHHHHHHhhhhhhhhhc-chhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccc--cc
Confidence            6777777776666666655554 57788888887777654   566677778899999999999999998763221  11


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhhh---h
Q 012965          321 VVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPL---N  397 (452)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~---~  397 (452)
                      ..................      .    ..+...+..++.+++.+...+....+..|.+|++.|+++.|+.+...   +
T Consensus       323 ~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g  392 (447)
T d1pw4a_         323 FFMTLVTIATIVYWMNPA------G----NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG  392 (447)
T ss_dssp             HHHHHHHHHHHHTTSCCT------T----CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccc------c----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            111221222111111100      1    11355666677787877778889999999999999999998876531   2


Q ss_pred             ----HHHHHHHhccccC
Q 012965          398 ----IFVCVVLYNVDAF  410 (452)
Q Consensus       398 ----~~~~~~l~~~~~~  410 (452)
                          ..+.+.+.+..++
T Consensus       393 ~~~~~~~~g~~~~~~g~  409 (447)
T d1pw4a_         393 SVAASAIVGYTVDFFGW  409 (447)
T ss_dssp             HHHHHHHHHHHHHSSCS
T ss_pred             HHHHHHHHHHHHHHhCh
Confidence                2334455565444

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2.9e-23  Score=195.53  Aligned_cols=354  Identities=13%  Similarity=0.015  Sum_probs=195.7

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhHHH-HHhhcCCCcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-
Q 012965           39 KNNYLLVYSLMMAGDWLQGPYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-  116 (452)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~p~l~~-i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-  116 (452)
                      .|.+....++..+..+...|++|. +.+++|+|++|+|++.+...+...+.+++.|+++||+||||+++.+.....++. 
T Consensus         9 ~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~   88 (417)
T d1pv7a_           9 FWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFA   88 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            344444455555666666788876 456799999999999999999899999999999999999999999988887765 


Q ss_pred             HHhcCccHHHH----HHHHHHHHhHhhhhhhhhhhhhhhhc----ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012965          117 ITKHSPQYKIL----MIGRILGGIATSLLFSAFESWLVAEH----NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL  188 (452)
Q Consensus       117 l~~~~~~~~~l----~~~r~l~G~~~~~~~~~~~~~~i~e~----~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~  188 (452)
                      +..+.++....    ++.+.+.+.+.+..............    +++.....    .......    .+..+++.+++.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~~~  160 (417)
T d1pv7a_          89 PFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFG----RARMFGC----VGWALGASIVGI  160 (417)
T ss_dssp             HHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHH----HHHHHHH----HHHHHHHHHHHH
T ss_pred             HHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHH----HHhhhhc----cccccccccccc
Confidence            45555554443    34444444444444443323121111    12222222    1222222    333444444444


Q ss_pred             hhcccCCCcchhhHHHHHHHHHHHHHHHhccccccCCCCcchhHHHH----HHHhhHHhhcchhHHHHHHHHH---hhhc
Q 012965          189 LVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQ----FRGAAVAIASDEKIALLGAIQS---LFEG  261 (452)
Q Consensus       189 l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~  261 (452)
                      +.+   ++|+..+........+.........+|++.+++++++..++    ..+...+..+++..+.......   ....
T Consensus       161 l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (417)
T d1pv7a_         161 MFT---INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYD  237 (417)
T ss_dssp             HHH---HCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHH
T ss_pred             ccc---ccccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhcccccccccccccccccccchhhhhHHHHHHHH
Confidence            432   34445555555444444444444455443332222211100    0111222233333222222211   1111


Q ss_pred             hhhhhhhhhccccccCCCCCch---HHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcC
Q 012965          262 SMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVA  338 (452)
Q Consensus       262 ~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (452)
                      ........+.+ +..+..+.+.   +.......++..++..+.+++.||.++|+  .+..+..+.++.........+.  
T Consensus       238 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~--  312 (417)
T d1pv7a_         238 VFDQQFANFFT-SFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN--ALLLAGTIMSVRIIGSSFATSA--  312 (417)
T ss_dssp             HHHHHHHHHHT-TSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHH--HHHHHHHHHHHHHHHHHTCCCH--
T ss_pred             hhhcccccccc-ccccccccchhhhcccccccccccccchhhhhhhhccccccc--chhhhHHHHHHhhhcccccccc--
Confidence            11111111222 2222222222   34556666788899999999999998877  3444444444444433222221  


Q ss_pred             CCCcCCCCcccchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhh-hhh------hhHHHHHHHhccccCC
Q 012965          339 PSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFF-RIP------LNIFVCVVLYNVDAFP  411 (452)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~------~~~~~~~~l~~~~~~~  411 (452)
                                   +...+...+.+++.+...+...++.+|.+|++.|+++.|+. ++.      .+..+++.+.+..+  
T Consensus       313 -------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g--  377 (417)
T d1pv7a_         313 -------------LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG--  377 (417)
T ss_dssp             -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC--
T ss_pred             -------------chhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
Confidence                         46677778889999999999999999999999999998864 332      23344555666533  


Q ss_pred             chHHHHHHHHHH
Q 012965          412 ITVMFGMCSIFL  423 (452)
Q Consensus       412 ~~~~~~~~~~~~  423 (452)
                      +...+...+++.
T Consensus       378 ~~~~~~~~~~~~  389 (417)
T d1pv7a_         378 FQGAYLVLGLVA  389 (417)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            433444333333

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=4.1e-10  Score=104.12  Aligned_cols=145  Identities=10%  Similarity=0.031  Sum_probs=102.3

Q ss_pred             CcchhHHHHHHHHhhhhhccccccccccccCcchHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHHhHhhhhhhhhhhh
Q 012965           70 GKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESW  148 (452)
Q Consensus        70 s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~  148 (452)
                      +..+.+.......+...++..+.+++.||+|+|+.+..+..+.+++. +..+.++.+.+++..++.|++.+...+...+ 
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~-  335 (417)
T d1pv7a_         257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK-  335 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             chhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHH-
Confidence            34444555566666667777889999999999999999999998876 6689999999999999999999999888766 


Q ss_pred             hhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHhcccc
Q 012965          149 LVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTE  221 (452)
Q Consensus       149 ~i~e~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  221 (452)
                      ++.|..+++.+..    ..+.....+..+|..+++.+.+.+.++.+  ++..|.+.+++.++..++.....++
T Consensus       336 ~~~~~~~~~~~~~----~~~~~~~~~~~~g~~i~~~~~G~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         336 YITSQFEVRFSAT----IYLVCFCFFKQLAMIFMSVLAGNMYESIG--FQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHHSCGGGHHH----HHHHHHTTTHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHCCHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            7777633333332    22222333455666777777777776554  4566777766666555554434443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=2.5e-09  Score=100.33  Aligned_cols=113  Identities=14%  Similarity=0.245  Sum_probs=81.7

Q ss_pred             hccccccCCCCC-chHHHHHHHHHHHHHHhHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCcc
Q 012965          270 WTPALSPNDEEI-PHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGIS  348 (452)
Q Consensus       270 ~~p~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (452)
                      ..|...+++.+. +.|++.+...++..++.++.|+++||+|||+  .+..+..+.+++............       +  
T Consensus        47 ~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~--~~~~~~~~~~~~~~~~~~~~~~~~-------~--  115 (447)
T d1pw4a_          47 AMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV--FLPAGLILAAAVMLFMGFVPWATS-------S--  115 (447)
T ss_dssp             HHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH--HHHHHHHHHHHHHHHHHHCHHHHS-------S--
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH--HHHHHHHHHHHHHhhccccchhhh-------h--
Confidence            345443333333 2388889999999999999999999999988  355555555555554443322211       0  


Q ss_pred             cchhhHHHHHHHHHHHhhchhhHHHHHHhhcCCcccccchhhhhhhh
Q 012965          349 FSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP  395 (452)
Q Consensus       349 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  395 (452)
                        .+..++..++.|++.+...+....++.|.+|+++|++++|+.+..
T Consensus       116 --~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~  160 (447)
T d1pw4a_         116 --IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCA  160 (447)
T ss_dssp             --SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccc
Confidence              136677788889999989999999999999999999999887764