Citrus Sinensis ID: 012987

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450--

MVGDGHVEKRSKDKKKKKKQKRGGGKKKMTAEQSLAFNSVTEWVYLDQSHSSSSSEDDFGVHQILNRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVSINQG

cccccccccccccHHHHHccccccccccccHHHHHHHccccHHHccccccccccccccccccccccccccccEEEEcccccccccccccHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHcccEEEEEEEEEEEEccccccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHccccccccccccccHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccccccccccccccccccccHHHHHHHHHcccccccccHHHHHHHHcccccccccccHHcccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccc

cccccccEEccccHHcccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccHHccccccccEEEEEccccccccccccHHHHHHHHHHcccEEEEEEcccccccHHHHHHHHHHcccEEEcEEEEEEEEcccccccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHHcccEEEEEcccccHHHHHccccccccccccHHHHHHHHHHHHHcccccccccccccccccccEEccccEcccccccccHccccccHHHHHHHHHHHHHcccccccHHHEEEcccccHccccccccccccHHHHHHHHHccccccccccEHEEEEEHHccEEccc

mvgdghvekrskdkkkkkkqkrgggkkkmtAEQSLAFNSVTEWVYLdqshssssseddfgvhQILNRAVDNNVVFElhshsnfsdgylspsklverahcngvkvlaltdhdtmsgiPEAIETARRFGmkiipgveISTIFCqrgseseepvHILAYysscgpskyEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIagkgvapgRLHVARAMVEAGHVENLKQAFARYLydggpaystgsepLAEVAVQLIHRTGglavlahpwalknpAAIIRKLKDVGlhglevyrsdgklvdvNFLEKIDNFLLLLCLRQITytdladtygllklggsdyhgrgghgeselgsvklpvlvLNDFLKVARPIWCGAIKEILEsyadepsdsnlshitrygrgkmlkrnyplncgkglVDECLSLWLTNEERQSAEFEAIKLKLSHVSINQG

mvgdghvekrskdkkkkkkqkrgggkkkmtaeqsLAFNSVTEWVYLDQSHSSSSSEDDFGVHQILNRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVlaltdhdtmsgIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVyrsdgklvdVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILesyadepsdsnlSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVSINQG

MVGDGHVEkrskdkkkkkkqkrgggkkkMTAEQSLAFNSVTEWVYLDQshsssssEDDFGVHQILNRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMIlklnklklplkWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLggsdyhgrgghgESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVSINQG

************************************FNSVTEWVYL************FGVHQILNRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYA*******LSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNE******FEAIK***********

*************************************************************************VFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYA**********ITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVSINQ*

******************************AEQSLAFNSVTEWVYL************FGVHQILNRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVSINQG

*********************************SLAFNSVTEWVYLD************GVH******VDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKLKLSHVSIN**

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		452	2.2.26 [Sep-21-2011]
P44176		274	Protein TrpH OS=Haemophil	yes	no	0.442	0.729	0.379	2e-27
O54453		293	Protein TrpH OS=Salmonell	yes	no	0.426	0.658	0.381	5e-26
P77766		293	Protein TrpH OS=Escherich	N/A	no	0.426	0.658	0.376	3e-23
Q8EQU6		1428	DNA polymerase III PolC-t	no	no	0.174	0.055	0.358	3e-06
Q73U92		1093	Error-prone DNA polymeras	N/A	no	0.232	0.096	0.351	5e-06
Q7TWL9		1091	Error-prone DNA polymeras	yes	no	0.247	0.102	0.352	6e-06
O50399		1098	Error-prone DNA polymeras	yes	no	0.247	0.102	0.352	6e-06
Q895K2		1427	DNA polymerase III PolC-t	yes	no	0.132	0.042	0.451	7e-06
Q6A780		1134	Error-prone DNA polymeras	no	no	0.214	0.085	0.368	1e-05
Q8RA32		1401	DNA polymerase III PolC-t	no	no	0.132	0.042	0.403	2e-05

>sp\|P44176\|TRPH_HAEIN Protein TrpH OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=trpH PE=3 SV=1	Back alignment and function desciption

 Score =  124 bits (311), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/211 (37%), Positives = 110/211 (52%), Gaps = 11/211 (5%)

Query: 75  FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134
           ++LH HS  SDG LSP++LV RA+  GV VLAL DHDT++GI EA   A+  G+++I GV
Sbjct: 5   YDLHCHSTASDGVLSPTELVHRAYAQGVNVLALCDHDTIAGIDEAEIAAKEVGIELITGV 64

Query: 135 EISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLK 194
           EIST +  RG      +HI+         K   L      +R+ R +   D   KL K  
Sbjct: 65  EISTNWEGRG------IHIVGLNFDKTHPKMTALLQSQKALREKRAVEIGD---KLEKAG 115

Query: 195 LPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAE 254
           +P  ++    +A   V   R H AR +V+ G V N  QAF RYL  G  A+         
Sbjct: 116 IPNAYDGAKALADGEVT--RAHYARYLVQIGKVSNDGQAFKRYLGQGKSAFVKAEWADIP 173

Query: 255 VAVQLIHRTGGLAVLAHPWALKNPAAIIRKL 285
            A++ IH  GG+A++AHP         +RKL
Sbjct: 174 TAIETIHAAGGIAIIAHPLRYNMTGKWVRKL 204

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

>sp\|O54453\|TRPH_SALTY Protein TrpH OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=trpH PE=3 SV=3	Back alignment and function description

>sp\|P77766\|TRPH_ECOLI Protein TrpH OS=Escherichia coli (strain K12) GN=trpH PE=3 SV=1	Back alignment and function description

>sp\|Q8EQU6\|DPO3_OCEIH DNA polymerase III PolC-type OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=polC PE=3 SV=1	Back alignment and function description

>sp\|Q73U92\|DNAE2_MYCPA Error-prone DNA polymerase OS=Mycobacterium paratuberculosis (strain ATCC BAA-968 / K-10) GN=dnaE2 PE=3 SV=1	Back alignment and function description

>sp\|Q7TWL9\|DNAE2_MYCBO Error-prone DNA polymerase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=dnaE2 PE=3 SV=2	Back alignment and function description

>sp\|O50399\|DNAE2_MYCTU Error-prone DNA polymerase OS=Mycobacterium tuberculosis GN=dnaE2 PE=2 SV=4	Back alignment and function description

>sp\|Q895K2\|DPO3_CLOTE DNA polymerase III PolC-type OS=Clostridium tetani (strain Massachusetts / E88) GN=polC PE=3 SV=1	Back alignment and function description

>sp\|Q6A780\|DNAE2_PROAC Error-prone DNA polymerase OS=Propionibacterium acnes (strain KPA171202 / DSM 16379) GN=dnaE2 PE=3 SV=1	Back alignment and function description

>sp\|Q8RA32\|DPO3_THETN DNA polymerase III PolC-type OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=polC PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		452
449438183		443	PREDICTED: protein TrpH-like [Cucumis sa	0.889	0.907	0.701	1e-170
224059026		408	predicted protein [Populus trichocarpa]	0.889	0.985	0.721	1e-168
356524846		458	PREDICTED: protein trpH-like [Glycine ma	0.907	0.895	0.692	1e-165
356512073		455	PREDICTED: protein trpH-like [Glycine ma	0.882	0.876	0.690	1e-158
297836026		434	PHP domain-containing protein [Arabidops	0.898	0.935	0.640	1e-156
18397349		434	Polymerase/histidinol phosphatase-like p	0.893	0.930	0.634	1e-154
15450377		433	At2g13860/F13J11.19 [Arabidopsis thalian	0.893	0.933	0.634	1e-154
359485749		341	PREDICTED: protein trpH-like [Vitis vini	0.727	0.964	0.742	1e-141
296085663		325	unnamed protein product [Vitis vinifera]	0.703	0.978	0.734	1e-135
326497631		426	predicted protein [Hordeum vulgare subsp	0.907	0.962	0.532	1e-128

>gi\|449438183\|ref\|XP_004136869.1\| PREDICTED: protein TrpH-like [Cucumis sativus] gi\|449478899\|ref\|XP_004155448.1\| PREDICTED: protein TrpH-like [Cucumis sativus]	Back alignment and taxonomy information

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 301/429 (70%), Positives = 348/429 (81%), Gaps = 27/429 (6%)

Query: 29  MTAEQSLAFNSVTEWVYLDQSHSSSSSE-----DDFGVHQILNRAVDNNVVFELHSHSNF 83
           MT+EQ  AF  VTEW YLDQS+S +SS      DDFGV + + +     VVFELHSHS  
Sbjct: 31  MTSEQIAAFKYVTEWAYLDQSNSLASSAAASVVDDFGVQKTVGKG-GEKVVFELHSHSKC 89

Query: 84  SDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQR 143
           SDG+L+PSKLVERAH NGVKVLALTDHDTMSGIPEA+E ARRFG+KIIPGVEISTIF   
Sbjct: 90  SDGFLTPSKLVERAHGNGVKVLALTDHDTMSGIPEAVEAARRFGIKIIPGVEISTIFSNG 149

Query: 144 G-SESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHV 202
           G SESEEPVHILAYYSSCGP+K E+LE FL NIR+GRFLRAK+M+ KLN+LKLPLKW+HV
Sbjct: 150 GDSESEEPVHILAYYSSCGPAKIEKLEKFLENIREGRFLRAKNMVSKLNELKLPLKWDHV 209

Query: 203 AKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHR 262
           AKI GKGVAPGRLHVARA+VEAG+VENLKQAF+RYL+DGGPAYSTGSEP A  A+QLIH 
Sbjct: 210 AKITGKGVAPGRLHVARALVEAGYVENLKQAFSRYLFDGGPAYSTGSEPCAAEAIQLIHD 269

Query: 263 TGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQ 322
           TGG+AVLAHPWALKNP A+IR+LKD GLHGLEVYRSDG+L                    
Sbjct: 270 TGGMAVLAHPWALKNPVAVIRRLKDAGLHGLEVYRSDGRLA------------------- 310

Query: 323 ITYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEIL 382
             Y+DLAD YGLLKLGGSD+HGRGGH ESE+GSV LPVL ++DFLK ARP+WC AI++IL
Sbjct: 311 -AYSDLADNYGLLKLGGSDFHGRGGHSESEVGSVNLPVLAMHDFLKAARPVWCSAIRDIL 369

Query: 383 ESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECLSLWLTNEERQSAEFEAIKL 442
           ESY +EPS+SNL+ ITR+GR ++LK       G  L++ CL+LWLTNEE+Q+ EFEAI+L
Sbjct: 370 ESYVEEPSESNLAKITRFGRTRVLKGGSSPGSGNDLIERCLTLWLTNEEKQNDEFEAIRL 429

Query: 443 KLSHVSINQ 451
           KLSH+SINQ
Sbjct: 430 KLSHISINQ 438

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224059026\|ref\|XP_002299681.1\| predicted protein [Populus trichocarpa] gi\|222846939\|gb\|EEE84486.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356524846\|ref\|XP_003531039.1\| PREDICTED: protein trpH-like [Glycine max]	Back alignment and taxonomy information

>gi\|356512073\|ref\|XP_003524745.1\| PREDICTED: protein trpH-like [Glycine max]	Back alignment and taxonomy information

>gi\|297836026\|ref\|XP_002885895.1\| PHP domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi\|297331735\|gb\|EFH62154.1\| PHP domain-containing protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|18397349\|ref\|NP_565360.1\| Polymerase/histidinol phosphatase-like protein [Arabidopsis thaliana] gi\|20197611\|gb\|AAD15431.2\| expressed protein [Arabidopsis thaliana] gi\|20197796\|gb\|AAM15252.1\| expressed protein [Arabidopsis thaliana] gi\|330251170\|gb\|AEC06264.1\| Polymerase/histidinol phosphatase-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|15450377\|gb\|AAK96482.1\| At2g13860/F13J11.19 [Arabidopsis thaliana] gi\|20466107\|gb\|AAM19975.1\| At2g13860/F13J11.19 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|359485749\|ref\|XP_002264419.2\| PREDICTED: protein trpH-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296085663\|emb\|CBI29462.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|326497631\|dbj\|BAK05905.1\| predicted protein [Hordeum vulgare subsp. vulgare]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		452
TAIR\|locus:2043738		434	AT2G13840 [Arabidopsis thalian	0.630	0.656	0.630	2.3e-129
UNIPROTKB\|Q3Z644		287	DET1610 "PHP domain N-terminal	0.462	0.728	0.366	5.2e-33
TIGR_CMR\|DET_1610		287	DET_1610 "PHP domain N-termina	0.462	0.728	0.366	5.2e-33
UNIPROTKB\|Q3A9Z4		278	CHY_2227 "PHP domain protein"	0.471	0.766	0.348	1.8e-30
TIGR_CMR\|CHY_2227		278	CHY_2227 "PHP domain protein"	0.471	0.766	0.348	1.8e-30
UNIPROTKB\|Q8ECV6		286	trpH "PHP family metal-depende	0.473	0.748	0.360	3.5e-27
TIGR_CMR\|SO_3017		286	SO_3017 "TrpH family protein"	0.473	0.748	0.360	3.5e-27
UNIPROTKB\|Q74D71		288	GSU1448 "Metal-dependent phosp	0.513	0.805	0.329	2.6e-24
TIGR_CMR\|GSU_1448		288	GSU_1448 "PHP domain protein"	0.513	0.805	0.329	2.6e-24
UNIPROTKB\|Q60BV5		277	MCA0359 "PHP domain protein" [	0.491	0.801	0.322	1.1e-23

TAIR\|locus:2043738 AT2G13840 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 940 (336.0 bits), Expect = 2.3e-129, Sum P(2) = 2.3e-129
 Identities = 184/292 (63%), Positives = 225/292 (77%)

Query:    29 MTAEQSLAFNSVTEWVYLDQXXXXXXXEDDFGVHQILNRA---VDNNVVFELHSHSNFSD 85
             MT EQS AF S+T+W+ L          DDF V+  +N         VVFELHSHSN SD
Sbjct:    22 MTTEQSEAFKSITDWLILGSSPSLSSSSDDFAVN--INSGSLRCGEKVVFELHSHSNRSD 79

Query:    86 GYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGS 145
             G+LSPSK+VERA+ NGVKVL+LTDHDTM+G+PEA+E  RRFG+KIIPG+EIST+F  R S
Sbjct:    80 GFLSPSKVVERAYNNGVKVLSLTDHDTMAGVPEAVEAGRRFGIKIIPGIEISTLFGLRDS 139

Query:   146 ESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMIXXXXXXXXXXXWEHVAKI 205
              SEEPVHILAYY + GP+ Y+ELE+FL  IRDGRF+R ++M+           WEHV +I
Sbjct:   140 GSEEPVHILAYYGTSGPALYDELEDFLVKIRDGRFVRGREMVLKLNKLKIPLKWEHVTRI 199

Query:   206 AGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGG 265
             AGK VAPGR+HVARA++EAG+VENL+QAF +YL+DGGPAY+TG+EP+AE AV+LI +TGG
Sbjct:   200 AGKDVAPGRMHVARALLEAGYVENLRQAFTKYLHDGGPAYATGTEPMAEEAVKLICKTGG 259

Query:   266 LAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLL 317
             +AVLAHPWALKN   IIR+LKD GLHG+EVYRSDGKL +V F E  D + LL
Sbjct:   260 VAVLAHPWALKNHVGIIRRLKDAGLHGVEVYRSDGKL-EV-FSELADTYNLL 309

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003824 "catalytic activity" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006260 "DNA replication" evidence=IEA;ISS

UNIPROTKB\|Q3Z644 DET1610 "PHP domain N-terminal region family protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]	Back alignment and assigned GO terms

TIGR_CMR\|DET_1610 DET_1610 "PHP domain N-terminal region family protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]	Back alignment and assigned GO terms

UNIPROTKB\|Q3A9Z4 CHY_2227 "PHP domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

TIGR_CMR\|CHY_2227 CHY_2227 "PHP domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8ECV6 trpH "PHP family metal-dependent phosphoesterases TrpH" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

TIGR_CMR\|SO_3017 SO_3017 "TrpH family protein" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

UNIPROTKB\|Q74D71 GSU1448 "Metal-dependent phosphoesterase, PHP family" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_1448 GSU_1448 "PHP domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

UNIPROTKB\|Q60BV5 MCA0359 "PHP domain protein" [Methylococcus capsulatus str. Bath (taxid:243233)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		452
COG0613		258	COG0613, COG0613, Predicted metal-dependent phosph	1e-40
cd07438		155	cd07438, PHP_HisPPase_AMP, Polymerase and Histidin	8e-32
cd07438		155	cd07438, PHP_HisPPase_AMP, Polymerase and Histidin	3e-18
smart00481		67	smart00481, POLIIIAc, DNA polymerase alpha chain l	4e-18
cd07432		129	cd07432, PHP_HisPPase, Polymerase and Histidinol P	2e-16
COG0587		1139	COG0587, DnaE, DNA polymerase III, alpha subunit [	3e-14
pfam02811		174	pfam02811, PHP, PHP domain	1e-13
PRK05672		1046	PRK05672, dnaE2, error-prone DNA polymerase; Valid	5e-13
PRK00448		1437	PRK00448, polC, DNA polymerase III PolC; Validated	3e-12
cd07435		268	cd07435, PHP_PolIIIA_POLC, Polymerase and Histidin	1e-11
cd07309		88	cd07309, PHP, Polymerase and Histidinol Phosphatas	4e-11
cd07431		179	cd07431, PHP_PolIIIA, Polymerase and Histidinol Ph	7e-11
COG2176		1444	COG2176, PolC, DNA polymerase III, alpha subunit (	2e-10
PRK06361		212	PRK06361, PRK06361, hypothetical protein; Provisio	6e-10
TIGR01405		1213	TIGR01405, polC_Gram_pos, DNA polymerase III, alph	2e-09
COG1387		237	COG1387, HIS2, Histidinol phosphatase and related	7e-08
cd07434		260	cd07434, PHP_PolIIIA_DnaE2, Polymerase and Histidi	2e-07
cd12112		235	cd12112, PHP_HisPPase_Chlorobi_like, Polymerase an	2e-07
cd12113		283	cd12113, PHP_PolIIIA_DnaE3, Polymerase and Histidi	2e-06
PRK07374		1170	PRK07374, dnaE, DNA polymerase III subunit alpha;	8e-06
cd12111		226	cd12111, PHP_HisPPase_Thermotoga_like, Polymerase	1e-05
PRK09532		874	PRK09532, PRK09532, DNA polymerase III subunit alp	4e-05
TIGR00594		1022	TIGR00594, polc, DNA-directed DNA polymerase III (	8e-05
PRK06826		1151	PRK06826, dnaE, DNA polymerase III DnaE; Reviewed	8e-05
PRK05673		1135	PRK05673, dnaE, DNA polymerase III subunit alpha;	2e-04
cd07433		277	cd07433, PHP_PolIIIA_DnaE1, Polymerase and Histidi	6e-04
PRK07135		973	PRK07135, dnaE, DNA polymerase III DnaE; Validated	0.001

>gnl\|CDD\|223686 COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]	Back alignment and domain information

 Score =  145 bits (368), Expect = 1e-40
 Identities = 94/281 (33%), Positives = 126/281 (44%), Gaps = 31/281 (11%)

Query: 75  FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIE-TARRFGMKIIPG 133
            +LH H+  SDG L+P ++VERA   GV VLA+TDHDT+ G+ EA      R G+ +IPG
Sbjct: 4   ADLHVHTTASDGGLTPREVVERAKAKGVDVLAITDHDTVRGLLEARRAAGLRLGITVIPG 63

Query: 134 VEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKL 193
           +EIST      +     +HIL           E L   LA  +  R  R +++  +L K 
Sbjct: 64  IEIST------TWGGHIIHILGLGI---DITDEPLVEGLARQQLYREERLEEIKERLGKA 114

Query: 194 KLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLA 253
            +P  +E   K+AG G    R H+AR  VE G+    +  F +YL  G P Y       +
Sbjct: 115 IIPHPFEGARKLAGLGAIT-RAHIARDAVEVGNASTRQGVFNKYLKRGAPKYVPPEWADS 173

Query: 254 EVAVQLIHRTGGLAVLAHPWALKNPA-AIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKID 312
           E  V  IH  GG AVLAHP         ++    D G  G+EV                 
Sbjct: 174 EAHVGAIHGAGGTAVLAHPGRYDLSLKRLVEAFADHGGDGIEVIYGAISP---------- 223

Query: 313 NFLLLLCLRQITYTDLADTYGLLKLGGSDYHGRGG--HGES 351
                    +     LA  +GLL   GSD+H  G    GES
Sbjct: 224 -------NPREVLALLAKEFGLLASVGSDFHTPGDWIEGES 257

Length = 258

>gnl\|CDD\|213993 cd07438, PHP_HisPPase_AMP, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase (HisPPase) AMP bound	Back alignment and domain information

>gnl\|CDD\|213993 cd07438, PHP_HisPPase_AMP, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase (HisPPase) AMP bound	Back alignment and domain information

>gnl\|CDD\|197753 smart00481, POLIIIAc, DNA polymerase alpha chain like domain	Back alignment and domain information

>gnl\|CDD\|213987 cd07432, PHP_HisPPase, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase	Back alignment and domain information

>gnl\|CDD\|223660 COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|217238 pfam02811, PHP, PHP domain	Back alignment and domain information

>gnl\|CDD\|235553 PRK05672, dnaE2, error-prone DNA polymerase; Validated	Back alignment and domain information

>gnl\|CDD\|234767 PRK00448, polC, DNA polymerase III PolC; Validated	Back alignment and domain information

>gnl\|CDD\|213990 cd07435, PHP_PolIIIA_POLC, Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III at PolC gene	Back alignment and domain information

>gnl\|CDD\|213985 cd07309, PHP, Polymerase and Histidinol Phosphatase domain	Back alignment and domain information

>gnl\|CDD\|213986 cd07431, PHP_PolIIIA, Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III	Back alignment and domain information

>gnl\|CDD\|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|180543 PRK06361, PRK06361, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233397 TIGR01405, polC_Gram_pos, DNA polymerase III, alpha chain, Gram-positive type	Back alignment and domain information

>gnl\|CDD\|224305 COG1387, HIS2, Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]	Back alignment and domain information

>gnl\|CDD\|213989 cd07434, PHP_PolIIIA_DnaE2, Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III at DnaE2 gene	Back alignment and domain information

>gnl\|CDD\|213996 cd12112, PHP_HisPPase_Chlorobi_like, Polymerase and Histidinol Phosphatase domain of Chlorobi like	Back alignment and domain information

>gnl\|CDD\|213997 cd12113, PHP_PolIIIA_DnaE3, Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III DnaE3	Back alignment and domain information

>gnl\|CDD\|168927 PRK07374, dnaE, DNA polymerase III subunit alpha; Validated	Back alignment and domain information

>gnl\|CDD\|213995 cd12111, PHP_HisPPase_Thermotoga_like, Polymerase and Histidinol Phosphatase domain of Thermotoga like	Back alignment and domain information

>gnl\|CDD\|181933 PRK09532, PRK09532, DNA polymerase III subunit alpha; Reviewed	Back alignment and domain information

>gnl\|CDD\|233039 TIGR00594, polc, DNA-directed DNA polymerase III (polc)	Back alignment and domain information

>gnl\|CDD\|235868 PRK06826, dnaE, DNA polymerase III DnaE; Reviewed	Back alignment and domain information

>gnl\|CDD\|235554 PRK05673, dnaE, DNA polymerase III subunit alpha; Validated	Back alignment and domain information

>gnl\|CDD\|213988 cd07433, PHP_PolIIIA_DnaE1, Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III DnaE1	Back alignment and domain information

>gnl\|CDD\|235944 PRK07135, dnaE, DNA polymerase III DnaE; Validated	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		452
COG0613		258	Predicted metal-dependent phosphoesterases (PHP fa	100.0
PRK09248		246	putative hydrolase; Validated	99.79
PRK00448		1437	polC DNA polymerase III PolC; Validated	99.78
TIGR00375		374	conserved hypothetical protein TIGR00375. The memb	99.7
PF02811		175	PHP: PHP domain; InterPro: IPR004013 The PHP (Poly	99.68
smart00481		67	POLIIIAc DNA polymerase alpha chain like domain. D	99.67
PRK05672		1046	dnaE2 error-prone DNA polymerase; Validated	99.62
PRK08392		215	hypothetical protein; Provisional	99.6
PRK09532		874	DNA polymerase III subunit alpha; Reviewed	99.58
PRK07328		269	histidinol-phosphatase; Provisional	99.51
PRK07135		973	dnaE DNA polymerase III DnaE; Validated	99.49
PRK05673		1135	dnaE DNA polymerase III subunit alpha; Validated	99.47
TIGR00594		1022	polc DNA-directed DNA polymerase III (polc). This	99.43
PRK06361		212	hypothetical protein; Provisional	99.43
PRK00912		237	ribonuclease P protein component 3; Provisional	99.42
PRK06826		1151	dnaE DNA polymerase III DnaE; Reviewed	99.41
TIGR01856		253	hisJ_fam histidinol phosphate phosphatase HisJ fam	99.41
PRK07279		1034	dnaE DNA polymerase III DnaE; Reviewed	99.39
PRK06920		1107	dnaE DNA polymerase III DnaE; Reviewed	99.38
PRK07945		335	hypothetical protein; Provisional	99.38
PRK08123		270	histidinol-phosphatase; Reviewed	99.36
PRK05898		971	dnaE DNA polymerase III DnaE; Validated	99.35
COG1387		237	HIS2 Histidinol phosphatase and related hydrolases	99.33
PRK07374		1170	dnaE DNA polymerase III subunit alpha; Validated	99.33
COG0587		1139	DnaE DNA polymerase III, alpha subunit [DNA replic	99.33
PRK08609		570	hypothetical protein; Provisional	99.32
TIGR01405		1213	polC_Gram_pos DNA polymerase III, alpha chain, Gra	99.3
COG1379		403	PHP family phosphoesterase with a Zn ribbon [Gener	99.27
PRK05588		255	histidinol-phosphatase; Provisional	99.25
PRK07329		246	hypothetical protein; Provisional	99.03
COG2176		1444	PolC DNA polymerase III, alpha subunit (gram-posit	98.98
PRK06740		331	histidinol-phosphatase; Validated	98.79
COG4464		254	CapC Capsular polysaccharide biosynthesis protein	98.07
PF13263		56	PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3	96.89
PF12228		592	DUF3604: Protein of unknown function (DUF3604); In	90.42
cd01292		275	metallo-dependent_hydrolases Superfamily of metall	86.89
TIGR00010		252	hydrolase, TatD family. Several genomes have multi	86.42
PF10566		273	Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro:	82.48
COG0084		256	TatD Mg-dependent DNase [DNA replication, recombin	81.02

>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=3.9e-39  Score=317.23  Aligned_cols=249  Identities=37%  Similarity=0.507  Sum_probs=227.4

Q ss_pred             ceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHH-HHHHhCCCeEEEEEEEEeEecCCCCCCCCc
Q 012987           72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAI-ETARRFGMKIIPGVEISTIFCQRGSESEEP  150 (452)
Q Consensus        72 ~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~-~~a~~~gi~vI~GiEis~~~~~~~~~~g~~  150 (452)
                      ||++||||||++|||.++|.+++++|++.|++++|||||||+.|+.++. .+....|+.+|||+|+++.|.      +..
T Consensus         1 ~~~~DLHvHSt~Sdg~~~p~~vv~~A~~~g~~vlAiTDHdt~~g~~~a~~~~~~~l~i~vipG~Ei~t~~~------~~~   74 (258)
T COG0613           1 WMKADLHVHTTASDGGLTPREVVERAKAKGVDVLAITDHDTVRGLLEARRAAGLRLGITVIPGIEISTTWG------GHI   74 (258)
T ss_pred             CcceeeeEecccCCCCCCHHHHHHHHHHcCCCEEEECCcccccccHHHHHHhhcCCCceeeccEEeecccC------CeE
Confidence            6899999999999999999999999999999999999999999999987 555567999999999999986      788


Q ss_pred             EEEEEEecCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCccccH
Q 012987          151 VHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENL  230 (452)
Q Consensus       151 vHILgy~~d~~~~~~~~L~~~L~~ir~~R~~R~~~~v~~L~~~Gi~i~~e~v~~~a~~~~~~gr~hia~aLv~~G~v~~~  230 (452)
                      +|+++++++.   ....+.+++.+.+..|.+|.+++.+++...+++..++.+...++.+ .+.|+|++..+++.+++.+.
T Consensus        75 ih~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~h~~~~~~~~~~~~-~~~~~h~~~~~ve~~~~~~~  150 (258)
T COG0613          75 IHILGLGIDI---TDEPLVEGLARQQLYREERLEEIKERLGKAIIPHPFEGARKLAGLG-AITRAHIARDAVEVGNASTR  150 (258)
T ss_pred             EEEEeecccc---cchhhhhhhhhccccHHHHHHHHHHhCCccccCcchHHHHhcCCcc-cchhhhhhhhhhccccccch
Confidence            9999999863   2355888899999999999999999999999999999988877654 46799999999999999999


Q ss_pred             HHHHHHHhhcCCCccccCCCCCHHHHHHHHHHcCCEEEEeCCCCCCCc-HHHHHHHHHcCCcEEEEeCCCCChhhhhhhh
Q 012987          231 KQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNP-AAIIRKLKDVGLHGLEVYRSDGKLVDVNFLE  309 (452)
Q Consensus       231 ~~af~~yL~~g~p~yv~~~~~~~eeaI~~I~~aGGvaVLAHP~~~~~~-~~li~~l~~~GldGIEV~~~~~~~~~~~~l~  309 (452)
                      .+.|++|+..++++|++..+.+.++.|..++.+||++|+|||.++..+ ..++..+.+.|.||||+++...++.+..   
T Consensus       151 ~~~fn~~~~~~~~~~~~~~~~~~~~~i~~~~ga~g~~v~ahp~r~~~~~~~lv~~~~~~~~~~ie~~~~~~~~~~~~---  227 (258)
T COG0613         151 QGVFNKYLKRGAPKYVPPEWADSEAHVGAIHGAGGTAVLAHPGRYDLSLKRLVEAFADHGGDGIEVIYGAISPNPRE---  227 (258)
T ss_pred             HHHHHHHHhccCcccCcccccCHHHHHHHHhhceeEEEeccccccccchhHHHHHHHhcCCCceEEecccCCcchHH---
Confidence            999999999999999999999999999999999999999999988764 6788899999999999999999887654   


Q ss_pred             hhhhHHHHHhhHHHHHHHHHHHcCCeeeeccCCCCCCC
Q 012987          310 KIDNFLLLLCLRQITYTDLADTYGLLKLGGSDYHGRGG  347 (452)
Q Consensus       310 ~~~n~~~l~~~~~~~~~~lA~~~gLl~tgGSDfHg~~~  347 (452)
                                    .+..+++..+++.|+|||||.++.
T Consensus       228 --------------~~~~~~k~~~~l~s~gs~fh~~~~  251 (258)
T COG0613         228 --------------VLALLAKEFGLLASVGSDFHTPGD  251 (258)
T ss_pred             --------------HHHHHHHHhhhhhcccccccCCCc
Confidence                          678999999999999999999864

>PRK09248 putative hydrolase; Validated	Back alignment and domain information

>PRK00448 polC DNA polymerase III PolC; Validated	Back alignment and domain information

>TIGR00375 conserved hypothetical protein TIGR00375	Back alignment and domain information

>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain	Back alignment and domain information

>smart00481 POLIIIAc DNA polymerase alpha chain like domain	Back alignment and domain information

>PRK05672 dnaE2 error-prone DNA polymerase; Validated	Back alignment and domain information

>PRK08392 hypothetical protein; Provisional	Back alignment and domain information

>PRK09532 DNA polymerase III subunit alpha; Reviewed	Back alignment and domain information

>PRK07328 histidinol-phosphatase; Provisional	Back alignment and domain information

>PRK07135 dnaE DNA polymerase III DnaE; Validated	Back alignment and domain information

>PRK05673 dnaE DNA polymerase III subunit alpha; Validated	Back alignment and domain information

>TIGR00594 polc DNA-directed DNA polymerase III (polc)	Back alignment and domain information

>PRK06361 hypothetical protein; Provisional	Back alignment and domain information

>PRK00912 ribonuclease P protein component 3; Provisional	Back alignment and domain information

>PRK06826 dnaE DNA polymerase III DnaE; Reviewed	Back alignment and domain information

>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family	Back alignment and domain information

>PRK07279 dnaE DNA polymerase III DnaE; Reviewed	Back alignment and domain information

>PRK06920 dnaE DNA polymerase III DnaE; Reviewed	Back alignment and domain information

>PRK07945 hypothetical protein; Provisional	Back alignment and domain information

>PRK08123 histidinol-phosphatase; Reviewed	Back alignment and domain information

>PRK05898 dnaE DNA polymerase III DnaE; Validated	Back alignment and domain information

>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]	Back alignment and domain information

>PRK07374 dnaE DNA polymerase III subunit alpha; Validated	Back alignment and domain information

>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK08609 hypothetical protein; Provisional	Back alignment and domain information

>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type	Back alignment and domain information

>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]	Back alignment and domain information

>PRK05588 histidinol-phosphatase; Provisional	Back alignment and domain information

>PRK07329 hypothetical protein; Provisional	Back alignment and domain information

>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK06740 histidinol-phosphatase; Validated	Back alignment and domain information

>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B	Back alignment and domain information

>PF12228 DUF3604: Protein of unknown function (DUF3604); InterPro: IPR022028 This family of proteins is found in bacteria	Back alignment and domain information

>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site	Back alignment and domain information

>TIGR00010 hydrolase, TatD family	Back alignment and domain information

>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3	Back alignment and domain information

>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		452
3e0f_A		301	Crystal Structure Of A Putative Metal-Dependent Pho		8e-17
2yb1_A		292	Structure Of An Amidohydrolase From Chromobacterium		1e-16
3f2b_A		1041	Dna Polymerase Polc From Geobacillus Kaustophilus C		8e-06

>pdb|3E0F|A Chain A, Crystal Structure Of A Putative Metal-Dependent Phosphoesterase (Bad_1165) From Bifidobacterium Adolescentis Atcc 15703 At 2.40 A Resolution Length = 301

Back alignment and structure

Iteration: 1

Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 75/268 (27%), Positives = 116/268 (43%), Gaps = 27/268 (10%) Query: 75 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 +++H H+ FSDG +P LVE+A G+ +A+ DHDT +G EA E + G+ ++ G Sbjct: 15 WDIHCHTVFSDGTETPRTLVEQARKLGLHGVAIADHDTTAGWDEATEASEEIGLPLLLGT 74 Query: 135 EISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMIXXXXXXX 194 EI+ + + + VH LA+ PS E + + AN R R R K + Sbjct: 75 EITAV------DEDVSVHXLAFQYD--PSN-EHISSXFANTRAARLRRTKRXVERLSQDF 125 Query: 195 XXXXWEHVAKIA-GKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLA 253 + +A++ G+ GR H+A A+V AG E AFA + Y P Sbjct: 126 PITWDDVLAQVKEGERTTIGRPHIADALVAAGVYETRSDAFADAVSAKSKYYIPTPSPST 185 Query: 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDV--------GLHGLEVYRSDGKLVDV 305 + + GG+ V AH +P R L D GL GLEV+ Sbjct: 186 HEVIAAVKGAGGVVVAAH---AGDPQRNRRLLSDEQLDAXIADGLDGLEVWHRG------ 236 Query: 306 NFLEKIDNFLLLLCLRQITYTDLADTYG 333 N E+ + L + + T +D +G Sbjct: 237 NPPEQRERLLTIAARHDLLVTGGSDWHG 264

PyMOL of 3e0f

>pdb|2YB1|A Chain A, Structure Of An Amidohydrolase From Chromobacterium Violaceum (Efi Target Efi-500202) With Bound Mn, Amp And Phosphate. Length = 292

Back alignment and structure

>pdb|3F2B|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex With Dna, Dgtp, Mg And Zn Length = 1041

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		452
2yb1_A		292	Amidohydrolase; HET: AMP; 1.90A {Chromobacterium v	1e-97
3o0f_A		301	Putative metal-dependent phosphoesterase; structur	2e-93
2anu_A		255	Hypothetical protein TM0559; predicted metal-depen	2e-13
3e38_A		343	Two-domain protein containing predicted PHP-like d	5e-13
2hnh_A		910	DNA polymerase III alpha subunit; DNA replication,	2e-07
3f2b_A		1041	DNA-directed DNA polymerase III alpha chain; DNA p	7e-07
1m65_A		245	Hypothetical protein YCDX; structural genomics, be	2e-06
2hpi_A		1220	DNA polymerase III alpha subunit; POL-beta-like nu	5e-06
3b0x_A		575	DNA polymerase beta family (X family); structural	2e-04
2yxo_A		267	Histidinol phosphatase; metal-dependent, hydrolase	7e-04

>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A Length = 292	Back alignment and structure

 Score =  293 bits (753), Expect = 1e-97
 Identities = 92/320 (28%), Positives = 138/320 (43%), Gaps = 43/320 (13%)

Query: 77  LHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEI 136
           LH HS  SDG L+P+++++RA      +LALTDHD   G+ EA   A R G+  + GVE+
Sbjct: 6   LHFHSRTSDGALTPTEVIDRAAARAPALLALTDHDCTGGLAEAAAAAARRGIPFLNGVEV 65

Query: 137 STIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLP 196
           S  + +        VHI+             L   L +IR+GR  RA+ M   L    + 
Sbjct: 66  SVSWGRHT------VHIVGLGIDP---AEPALAAGLKSIREGRLERARQMGASLEAAGIA 116

Query: 197 LKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVA 256
             ++   +         R H AR +V++G V++++  F +YL  G P Y +      E A
Sbjct: 117 GCFDGAMRWCDNPEMISRTHFARHLVDSGAVKDMRTVFRKYLTPGKPGYVSHQWASLEDA 176

Query: 257 VQLIHRTGGLAVLAHPWALKNPA----AIIRKLKDVGLHGLEVYRSDGKLVDVNFLEKID 312
           V  I   GG+AV+AHP            +I   +  G  G+EV      L D++      
Sbjct: 177 VGWIVGAGGMAVIAHPGRYDMGRTLIERLILDFQAAGGQGIEVASGSHSLDDMHKFA--- 233

Query: 313 NFLLLLCLRQITYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLKVARP 372
                           AD +GL    GSD+H   G G  ++G  +       D   + RP
Sbjct: 234 --------------LHADRHGLYASSGSDFHAP-GEGGRDVGHTE-------DLPPICRP 271

Query: 373 IWCGAIKEILESYADEPSDS 392
           IW       LE+    P+D+
Sbjct: 272 IW-----RELEARILRPADA 286

PyMOL of 2yb1

>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A* Length = 301	Back alignment and structure

>2anu_A Hypothetical protein TM0559; predicted metal-dependent phosphoesterase (PHP famil structural genomics, joint center for structural genomics; 2.40A {Thermotoga maritima} SCOP: c.6.3.1 Length = 255	Back alignment and structure

>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482} Length = 343	Back alignment and structure

>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A* Length = 910	Back alignment and structure

>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* Length = 1041	Back alignment and structure

>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A Length = 245	Back alignment and structure

>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* Length = 1220	Back alignment and structure

>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A* Length = 575	Back alignment and structure

>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A Length = 267	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		452
3o0f_A		301	Putative metal-dependent phosphoesterase; structur	100.0
2yb1_A		292	Amidohydrolase; HET: AMP; 1.90A {Chromobacterium v	100.0
3e38_A		343	Two-domain protein containing predicted PHP-like d	99.95
2yxo_A		267	Histidinol phosphatase; metal-dependent, hydrolase	99.89
1m65_A		245	Hypothetical protein YCDX; structural genomics, be	99.89
2anu_A		255	Hypothetical protein TM0559; predicted metal-depen	99.88
3qy7_A		262	Tyrosine-protein phosphatase YWQE; TIM barrel, pol	99.73
2wje_A		247	CPS4B, tyrosine-protein phosphatase CPSB; capsule	99.72
2hnh_A		910	DNA polymerase III alpha subunit; DNA replication,	99.72
2w9m_A		578	Polymerase X; SAXS, DNA repair, DNA polymerase, DN	99.72
2hpi_A		1220	DNA polymerase III alpha subunit; POL-beta-like nu	99.65
3b0x_A		575	DNA polymerase beta family (X family); structural	99.63
3f2b_A		1041	DNA-directed DNA polymerase III alpha chain; DNA p	99.47
3dcp_A		283	Histidinol-phosphatase; HISK, histidine biosynthes	99.35
1v77_A		212	PH1877P, hypothetical protein PH1877; RNAse P prot	98.55
2y1h_A		272	Putative deoxyribonuclease tatdn3; hydrolase; 2.50	91.05
1zzm_A		259	Putative deoxyribonuclease YJJV; hydrolaze, zinc,	87.85
3rcm_A		287	TATD family hydrolase; HET: CIT; 2.05A {Pseudomona	83.16
1xwy_A		264	DNAse TATD, deoxyribonuclease TATD; TIM barrael, z	82.2
1yix_A		265	Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW	81.06
3gg7_A		254	Uncharacterized metalloprotein; structural genomic	80.97
2gzx_A		265	Putative TATD related DNAse; deoxyribonuclease, NE	80.9
2xio_A		301	Putative deoxyribonuclease tatdn1; hydrolase; 1.19	80.03

>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A*	Back alignment and structure

Probab=100.00  E-value=1.1e-61  Score=484.93  Aligned_cols=270  Identities=30%  Similarity=0.463  Sum_probs=247.9

Q ss_pred             CCceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEEEEEEEEeEecCCCCCCCC
Q 012987           70 DNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEE  149 (452)
Q Consensus        70 ~~~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~~~~~~~g~  149 (452)
                      ...|++|||+||+||||.++|++++++|++.|+++|||||||++.|+.++.+++++.||.+|+|+||++.+.      +.
T Consensus        10 ~m~~~~DLH~Hs~~SDG~~~~~elv~~A~~~Gl~~iaiTDH~~~~g~~~~~~~~~~~gi~~i~GvEis~~~~------~~   83 (301)
T 3o0f_A           10 PPAQGWDIHCHTVFSDGTETPRTLVEQARKLGLHGVAIADHDTTAGWDEATEASEEIGLPLLLGTEITAVDE------DV   83 (301)
T ss_dssp             CCSSSEEEEECCTTTTCSSCHHHHHHHHHHTTCSEEEECCBTCCTTHHHHHHHHHHHTCCEEEEEEEEEEET------TE
T ss_pred             cccceEEeeECCCCCCCCCCHHHHHHHHHHcCCCEEEEcCCCccccHHHHHHHHHhcCCEEEEEEEEEEEeC------Cc
Confidence            446799999999999999999999999999999999999999999999999999999999999999999985      56


Q ss_pred             cEEEEEEecCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCC--CCCCHHHHHHHHHHcCcc
Q 012987          150 PVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKG--VAPGRLHVARAMVEAGHV  227 (452)
Q Consensus       150 ~vHILgy~~d~~~~~~~~L~~~L~~ir~~R~~R~~~~v~~L~~~Gi~i~~e~v~~~a~~~--~~~gr~hia~aLv~~G~v  227 (452)
                      .+|||+|+++.   ..+.|.++|+.+|+.|.+|+++|+++|++. ++++||++.++++.+  ..+||||||++|+++||+
T Consensus        84 ~vHiL~~~~d~---~~~~l~~~l~~~~~~R~~R~~~i~~~L~~~-~~i~~e~v~~~a~~~~~~~igR~HiA~~Lv~~G~~  159 (301)
T 3o0f_A           84 SVHMLAFQYDP---SNEHISSMFANTRAARLRRTKRMVERLSQD-FPITWDDVLAQVKEGERTTIGRPHIADALVAAGVY  159 (301)
T ss_dssp             EEEEEEESCCT---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSCCHHHHHTTCTTGGGSCCCHHHHHHHHHHTTSC
T ss_pred             eEEEEEEcCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCC
Confidence            89999999874   358899999999999999999999999999 999999998876542  468999999999999999


Q ss_pred             ccHHHHHHHHhhcCCCccccCCCCCHHHHHHHHHHcCCEEEEeCCCCCC-----CcHHHHHHHHHcCCcEEEEeCCCCCh
Q 012987          228 ENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALK-----NPAAIIRKLKDVGLHGLEVYRSDGKL  302 (452)
Q Consensus       228 ~~~~~af~~yL~~g~p~yv~~~~~~~eeaI~~I~~aGGvaVLAHP~~~~-----~~~~li~~l~~~GldGIEV~~~~~~~  302 (452)
                      .+..++|++||++|+|+|||..+++++|+|++|+++||++|||||+++.     ...+++.+|++.|+|||||+|++++.
T Consensus       160 ~~~~~aF~~~l~~g~~~yV~~~~~~~~eaI~~I~~aGGvaVLAHP~r~~~~r~~~~~~~l~~l~~~GldgIEv~~~~~~~  239 (301)
T 3o0f_A          160 ETRSDAFADAVSAKSKYYIPTPSPSTHEVIAAVKGAGGVVVAAHAGDPQRNRRLLSDEQLDAMIADGLDGLEVWHRGNPP  239 (301)
T ss_dssp             SSHHHHHTTTTSTTSTTCCCCCCCBHHHHHHHHHHTTCEEEECSTTCTTTCSSCCCHHHHHHHHHHTCCEEEEESTTSCH
T ss_pred             CCHHHHHHHHHcCCCccccCccCCCHHHHHHHHHHCCCEEEecChhhhccccccCcHHHHHHHHHCCCCEEEEeCCCCCH
Confidence            9999999999999999999999999999999999999999999997753     34678999999999999999999998


Q ss_pred             hhhhhhhhhhhHHHHHhhHHHHHHHHHHHcCCeeeeccCCCCCCCCCCccCCCccCChhHHHHHhc
Q 012987          303 VDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLK  368 (452)
Q Consensus       303 ~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tgGSDfHg~~~~~~~~lG~~~~p~~~~~~~~~  368 (452)
                      ++.+                 ++.++|+++||++||||||||+.+  +..||.+.+|++.++.|..
T Consensus       240 ~~~~-----------------~~~~lA~~~gL~~tgGSD~Hg~~~--~~~lG~~~~~~~~~~~l~~  286 (301)
T 3o0f_A          240 EQRE-----------------RLLTIAARHDLLVTGGSDWHGKGK--PNGLGENLTDDDTVREILC  286 (301)
T ss_dssp             HHHH-----------------HHHHHHHHHTCEEEECCCBCGGGS--SCCTTSSCBCHHHHHHHHH
T ss_pred             HHHH-----------------HHHHHHHHcCCceEEEcCCCCCCC--CCcCCCcCCCHHHHHHHHH
Confidence            8765                 789999999999999999999854  4789999999887666553

PyMOL of 3o0f

>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A	Back alignment and structure

>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}	Back alignment and structure

>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A	Back alignment and structure

>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A	Back alignment and structure

>2anu_A Hypothetical protein TM0559; predicted metal-dependent phosphoesterase (PHP famil structural genomics, joint center for structural genomics; 2.40A {Thermotoga maritima} SCOP: c.6.3.1	Back alignment and structure

>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A	Back alignment and structure

>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A	Back alignment and structure

>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*	Back alignment and structure

>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}	Back alignment and structure

>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*	Back alignment and structure

>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*	Back alignment and structure

>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*	Back alignment and structure

>3dcp_A Histidinol-phosphatase; HISK, histidine biosynthesis, NESG, LMR141, structural genomics, PSI-2, protein structure initiative; 2.10A {Listeria monocytogenes str}	Back alignment and structure

>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*	Back alignment and structure

>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens}	Back alignment and structure

>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12	Back alignment and structure

>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}	Back alignment and structure

>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12	Back alignment and structure

>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center for structural genomics, nysgxrc; 1.90A {Escherichia coli} SCOP: c.1.9.12	Back alignment and structure

>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0	Back alignment and structure

>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp}	Back alignment and structure

>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		452
d2anua1		229	c.6.3.1 (A:5-233) Hypothetical protein TM0559 {The	3e-12
d1m65a_		244	c.6.3.1 (A:) Hypothetical protein YcdX {Escherichi	4e-10

>d2anua1 c.6.3.1 (A:5-233) Hypothetical protein TM0559 {Thermotoga maritima [TaxId: 2336]} Length = 229	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: PHP domain-like
family: PHP domain
domain: Hypothetical protein TM0559
species: Thermotoga maritima [TaxId: 2336]

 Score = 63.9 bits (154), Expect = 3e-12
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 1/86 (1%)

Query: 76  ELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVE 135
           + H H+N SDG+L   ++V+    +GV V+++TDH       E  +      +  I   +
Sbjct: 7   DFHVHTNMSDGHLPLGEVVDLFGKHGVDVVSITDHIVDRRTLEQRKRNGE-PLGAITEDK 65

Query: 136 ISTIFCQRGSESEEPVHILAYYSSCG 161
                 +   E +            G
Sbjct: 66  FQDYLKRLWREQKRAWEEYGMILIPG 91

PyMOL of d2anua1

>d1m65a_ c.6.3.1 (A:) Hypothetical protein YcdX {Escherichia coli [TaxId: 562]} Length = 244	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		452
d2anua1		229	Hypothetical protein TM0559 {Thermotoga maritima [	99.9
d1m65a_		244	Hypothetical protein YcdX {Escherichia coli [TaxId	99.76
d1v77a_		202	Ribonuclease P protein component 3, Rnp3 {Pyrococc	82.55

>d2anua1 c.6.3.1 (A:5-233) Hypothetical protein TM0559 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: PHP domain-like
family: PHP domain
domain: Hypothetical protein TM0559
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=3.3e-24  Score=198.51  Aligned_cols=164  Identities=24%  Similarity=0.285  Sum_probs=122.3

Q ss_pred             CceEEceeeeCCCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHH---------------------------HHH
Q 012987           71 NNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAI---------------------------ETA  123 (452)
Q Consensus        71 ~~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~---------------------------~~a  123 (452)
                      .|+++|||+||.||||..+|++++++|++.|+++||||||+++.+...+.                           ...
T Consensus         2 ~W~~aDlH~HT~~SDg~~t~~e~~~~A~~~Gld~iaiTDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (229)
T d2anua1           2 EWLLCDFHVHTNMSDGHLPLGEVVDLFGKHGVDVVSITDHIVDRRTLEQRKRNGEPLGAITEDKFQDYLKRLWREQKRAW   81 (229)
T ss_dssp             EEEEEEEEECCTTTTCSSCHHHHHHHHHHTTCSEEEEEEEEECHHHHHHHHHTTCCCCSCCSTTHHHHHHHHHHHHHHHH
T ss_pred             CceeeecccCcCccCCCCCHHHHHHHHHHcCCCEEEEeCCCCccchhhhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999998876544332                           223


Q ss_pred             HhCCCeEEEEEEEEeEecCCCCCCCCcEEEEEEecCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHH
Q 012987          124 RRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVA  203 (452)
Q Consensus       124 ~~~gi~vI~GiEis~~~~~~~~~~g~~vHILgy~~d~~~~~~~~L~~~L~~ir~~R~~R~~~~v~~L~~~Gi~i~~e~v~  203 (452)
                      ...++.+++|+|.....        ...++++++...                                           
T Consensus        82 ~~~~~~~~~g~e~~~~~--------~~~~~~~~~~~~-------------------------------------------  110 (229)
T d2anua1          82 EEYGMILIPGVEITNNT--------DLYHIVAVDVKE-------------------------------------------  110 (229)
T ss_dssp             HHHSCEEEEEEEEEETT--------TTEEEEEESCCS-------------------------------------------
T ss_pred             hhcCeeeeccceecccc--------cceeEEecCCcc-------------------------------------------
Confidence            35689999999998753        456777776421                                           


Q ss_pred             HHhCCCCCCCHHHHHHHHHHcCccccHHHHHHHHhhcCCCccccCCCCCHHHHHHHHHHcCCEEEEeCCCCCCCcH----
Q 012987          204 KIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPA----  279 (452)
Q Consensus       204 ~~a~~~~~~gr~hia~aLv~~G~v~~~~~af~~yL~~g~p~yv~~~~~~~eeaI~~I~~aGGvaVLAHP~~~~~~~----  279 (452)
                                                               |. ....+.+++++.+++.||++|+|||+......    
T Consensus       111 -----------------------------------------~~-~~~~~~~~~~~~~~~~g~~~i~aHp~~~~~~~~~~~  148 (229)
T d2anua1         111 -----------------------------------------YV-DPSLPVEEIVEKLKEQNALVIAAHPDRKKQDEEHLS  148 (229)
T ss_dssp             -----------------------------------------CC-CTTSCHHHHHHHHHHTTCEEEECCCCTTC-----CC
T ss_pred             -----------------------------------------cc-CcccchHHHHHHHHhCCCeEEcccccccccchhhhh
Confidence                                                     00 01246789999999999999999998653211    


Q ss_pred             -HH--HHHHHHcCCcEEEEeCCCCChhhhhhhhhhhhHHHHHhhHHHHHHHHHHHcCCeeeeccCCCCCCCCCCccCCCc
Q 012987          280 -AI--IRKLKDVGLHGLEVYRSDGKLVDVNFLEKIDNFLLLLCLRQITYTDLADTYGLLKLGGSDYHGRGGHGESELGSV  356 (452)
Q Consensus       280 -~l--i~~l~~~GldGIEV~~~~~~~~~~~~l~~~~n~~~l~~~~~~~~~~lA~~~gLl~tgGSDfHg~~~~~~~~lG~~  356 (452)
                       ..  ..+.....++|||++++..                        +.++|+++++.+++|||+|.+     ..+|..
T Consensus       149 ~~~~~~~~~~~~~~~~iE~~~~~~------------------------~~~~~~~~~l~~v~~SDaH~~-----~~~G~~  199 (229)
T d2anua1         149 WYLWANMERFKDTFDAWEIANRDD------------------------LFNSVGVKKYRYVANSDFHEL-----WHVYSW  199 (229)
T ss_dssp             CHHHHSTTTTTTTCSEEEEEETTE------------------------ECHHHHHTTCCEEEECCBCSG-----GGGSSE
T ss_pred             hhhHhHHHHHhccCcEEEeccHHH------------------------HHHHHHHcCCCEEeeCCCCCc-----cccCCe
Confidence             11  1112345699999987531                        346688999999999999986     357765

PyMOL of d2anua1

>d1m65a_ c.6.3.1 (A:) Hypothetical protein YcdX {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1v77a_ c.6.3.2 (A:) Ribonuclease P protein component 3, Rnp3 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure