Citrus Sinensis ID: 013003

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-
MDFKRLSWVLFPVAVVSLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHIPISALYSQAFTS
cccccEEHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEEEEccccccEEEEEccccccccccccccccEEEEcccccccccccccccccccEEEEEcccccHHHHHHHHHHccccEEEEEEccccccccccccccccccccccEEEccccccHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccEEccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccEEHHHHHHHHHHHEEEEEEEEEcccccEEEEEEEEEccccccccccEEEEEcccccccccEEEEccccEEEcHHHHHHHHHHccccccccEEEEEEEEEEEccc
ccHHHHHHHHHHHHHHHHHHcccHccccccccccccccccccccccEEEEEEEEccccccccEEEEEEccccccccccHccccccccEccccccccccccccccccEEEEEcccccHHHHHHHHHHcccEEEEEEEcccHHHHHcccccccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHEcHHHccccEEEEEEcccccccccccEEEEEccccccccccEEEccccEEcccHEEEEEHHHcHHcccccEEEEEEEEEEEccc
MDFKRLSWVLFPVAVVSLVCypasvtagdivhdddlapkkpgcendfVLVKVQTWidgieneefvgvgarfgttivskeknanqihltlshprdccsmpkhkyagdvimvdrgnckfttKANIAEAAGASALLIINNQKELYkmvcdpdetdldihipavmmpqdagASLEKMLLNTSSVGTILCASYWSAWSARETAIEQEKLLKDAVdeipdakavgVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAgesfikvpffgavshltlAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIvhipnlkvGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARgdksgedgipmllkiprmfdpwggysiigfgdillPGLIIAFSLRFklsdlsshhipisalysqafts
mdfkrlswVLFPVAVVSLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNANQIHLTlshprdccsmpKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVArgdksgedgiPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSshhipisalysqafts
MDFKRLSWVLFPVAVVSLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHIPISALYSQAFTS
****RLSWVLFPVAVVSLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHIPISALY******
***KRLSWVLFPVAVVSLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVGTILCASYWSAWSARETAIE***************K*VGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHIPISALYSQAFT*
MDFKRLSWVLFPVAVVSLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHIPISALYSQAFTS
MDFKRLSWVLFPVAVVSLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVGTILCASYWSAWSARETAIEQ*******************SGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHIPISALYSQAFTS
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDFKRLSWVLFPVAVVSLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHIPISALYSQAFTS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query451 2.2.26 [Sep-21-2011]
Q8W469540 Signal peptide peptidase- yes no 0.898 0.75 0.767 0.0
Q5Z413542 Signal peptide peptidase- yes no 0.889 0.739 0.675 1e-172
Q0DWA9545 Signal peptide peptidase- no no 0.889 0.735 0.698 1e-168
Q0WMJ8540 Signal peptide peptidase- no no 0.920 0.768 0.658 1e-166
Q53P98534 Signal peptide peptidase- no no 0.866 0.732 0.471 1e-111
Q4V3B8540 Signal peptide peptidase- no no 0.893 0.746 0.430 2e-99
Q9MA44536 Signal peptide peptidase- no no 0.878 0.738 0.422 2e-90
Q5N808523 Signal peptide peptidase- no no 0.875 0.755 0.384 7e-83
Q5PQL3 577 Signal peptide peptidase- yes no 0.727 0.568 0.288 2e-34
Q3TD49 578 Signal peptide peptidase- yes no 0.727 0.567 0.291 3e-34
>sp|Q8W469|SIPL2_ARATH Signal peptide peptidase-like 2 OS=Arabidopsis thaliana GN=SPPL2 PE=2 SV=1 Back     alignment and function desciption
 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/430 (76%), Positives = 374/430 (86%), Gaps = 25/430 (5%)

Query: 24  SVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNAN 83
           +VTAGDIVH D+LAPKKPGCENDFVLVKVQTWIDG+ENEEFVGVGARFG  IVSKEKNAN
Sbjct: 24  TVTAGDIVHQDNLAPKKPGCENDFVLVKVQTWIDGVENEEFVGVGARFGKRIVSKEKNAN 83

Query: 84  QIHLTLSHPRDCCSMPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYK 143
           Q HL  ++PRD C+  K+K +GDV++V+RGNC+FT KAN AEAAGASALLIINNQKELYK
Sbjct: 84  QTHLVFANPRDSCTPLKNKLSGDVVIVERGNCRFTAKANNAEAAGASALLIINNQKELYK 143

Query: 144 MVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSV----------------------- 180
           MVC+PDETDLDI IPAVM+PQDAGASL+KML N+S V                       
Sbjct: 144 MVCEPDETDLDIQIPAVMLPQDAGASLQKMLANSSKVSAQLYSPRRPAVDVAEVFLWLMA 203

Query: 181 -GTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVLFVLVAS 239
            GTILCASYWSAWSARE AIE +KLLKDA+DEIP+    G SGVV+IN+ SA+ FV++AS
Sbjct: 204 IGTILCASYWSAWSAREAAIEHDKLLKDAIDEIPNTNDGG-SGVVEINSISAIFFVVLAS 262

Query: 240 CFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSH 299
            FLV+LYKLMS WF+ELLV++FCIGGVEGLQTCLVALLSRWF+RA ++++KVPF G +S+
Sbjct: 263 GFLVILYKLMSYWFVELLVVVFCIGGVEGLQTCLVALLSRWFQRAADTYVKVPFLGPISY 322

Query: 300 LTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAF 359
           LTLAV+PFCI FAV+WA+YR  SFAWIGQD+LGIALIITVLQIVH+PNLKVGTVLLSCAF
Sbjct: 323 LTLAVSPFCIVFAVLWAVYRVHSFAWIGQDVLGIALIITVLQIVHVPNLKVGTVLLSCAF 382

Query: 360 MYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLP 419
           +YDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLP
Sbjct: 383 LYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLP 442

Query: 420 GLIIAFSLRF 429
           GL+IAF+LR+
Sbjct: 443 GLLIAFALRY 452
Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|Q5Z413|SIPL5_ORYSJ Signal peptide peptidase-like 5 OS=Oryza sativa subsp. japonica GN=SPPL5 PE=2 SV=1 Back     alignment and function description
>sp|Q0DWA9|SIPL4_ORYSJ Signal peptide peptidase-like 4 OS=Oryza sativa subsp. japonica GN=SPPL4 PE=2 SV=1 Back     alignment and function description
>sp|Q0WMJ8|SIPL4_ARATH Signal peptide peptidase-like 4 OS=Arabidopsis thaliana GN=SPPL4 PE=2 SV=1 Back     alignment and function description
>sp|Q53P98|SIPL2_ORYSJ Signal peptide peptidase-like 2 OS=Oryza sativa subsp. japonica GN=SPPL2 PE=2 SV=1 Back     alignment and function description
>sp|Q4V3B8|SIPL3_ARATH Signal peptide peptidase-like 3 OS=Arabidopsis thaliana GN=SPPL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9MA44|SIPL5_ARATH Signal peptide peptidase-like 5 OS=Arabidopsis thaliana GN=SPPL5 PE=2 SV=1 Back     alignment and function description
>sp|Q5N808|SIPL3_ORYSJ Signal peptide peptidase-like 3 OS=Oryza sativa subsp. japonica GN=SPPL3 PE=2 SV=1 Back     alignment and function description
>sp|Q5PQL3|SPP2B_RAT Signal peptide peptidase-like 2B OS=Rattus norvegicus GN=Sppl2b PE=2 SV=1 Back     alignment and function description
>sp|Q3TD49|SPP2B_MOUSE Signal peptide peptidase-like 2B OS=Mus musculus GN=Sppl2b PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query451
224071926541 predicted protein [Populus trichocarpa] 0.951 0.792 0.816 0.0
255537495542 Minor histocompatibility antigen H13, pu 0.940 0.782 0.798 0.0
359474199548 PREDICTED: signal peptide peptidase-like 0.951 0.782 0.796 0.0
224058471541 predicted protein [Populus trichocarpa] 0.957 0.798 0.785 0.0
16118856537 growth-on protein GRO10 [Euphorbia esula 0.909 0.763 0.806 0.0
449452304545 PREDICTED: signal peptide peptidase-like 0.951 0.787 0.764 0.0
12324949519 unknown protein; 50290-46846 [Arabidopsi 0.898 0.780 0.767 0.0
21554548540 growth-on protein GRO10 [Arabidopsis tha 0.898 0.75 0.769 0.0
18407872540 signal peptide peptidase-like 2 [Arabido 0.898 0.75 0.767 0.0
297840125540 protease-associated domain-containing pr 0.898 0.75 0.765 0.0
>gi|224071926|ref|XP_002303595.1| predicted protein [Populus trichocarpa] gi|222841027|gb|EEE78574.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/453 (81%), Positives = 402/453 (88%), Gaps = 24/453 (5%)

Query: 1   MDFKRLSWVLFPVAVVSLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIE 60
           MD ++L  V+   AV+SLVCYP+SVTAGDIVHDD+LAPKKPGCENDFVLVKVQTW+DG+E
Sbjct: 1   MDLQKLCLVITVTAVISLVCYPSSVTAGDIVHDDNLAPKKPGCENDFVLVKVQTWVDGVE 60

Query: 61  NEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPKHKYAGDVIMVDRGNCKFTTK 120
           + EFVGVGARFGTTIVSKEKNANQI LTLS P DCCS PKHK  GDVIMV RG+CKFTTK
Sbjct: 61  DAEFVGVGARFGTTIVSKEKNANQIRLTLSDPLDCCSAPKHKLDGDVIMVHRGHCKFTTK 120

Query: 121 ANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSV 180
           AN AEAAGASALLIINNQKELYKMVC+PDETDLDIHIPAVM+PQDAG+SLEKMLL  SSV
Sbjct: 121 ANNAEAAGASALLIINNQKELYKMVCEPDETDLDIHIPAVMLPQDAGSSLEKMLLTNSSV 180

Query: 181 ------------------------GTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAK 216
                                   GTILCASYWSAWSARE AIEQ+KLLKDAVDEIP+ K
Sbjct: 181 SVQLYSPRRPLVDIAEVFLWLMAVGTILCASYWSAWSAREAAIEQDKLLKDAVDEIPNEK 240

Query: 217 AVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVAL 276
           AVG S VVDINT SAVLFV++ASCFLV+LYKLMS WF+ELLV+LFCIGGVEGLQTCLVAL
Sbjct: 241 AVGFSTVVDINTTSAVLFVVIASCFLVILYKLMSYWFIELLVVLFCIGGVEGLQTCLVAL 300

Query: 277 LSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALI 336
           LSRWF+ AGES+IKVPFFG +S+LTLAV PFCIAFAVVWA+YR VSFAWIGQDILGIALI
Sbjct: 301 LSRWFKHAGESYIKVPFFGPLSYLTLAVAPFCIAFAVVWAVYRTVSFAWIGQDILGIALI 360

Query: 337 ITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLL 396
           ITVLQIVH+PNLKVGTVLLSCAF+YDIFWVFVSKK+FHESVMIVVARGD+SGEDGIPMLL
Sbjct: 361 ITVLQIVHVPNLKVGTVLLSCAFLYDIFWVFVSKKVFHESVMIVVARGDRSGEDGIPMLL 420

Query: 397 KIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRF 429
           KIPR+FDPWGGYSIIGFGDILLPGL+IAFSLR+
Sbjct: 421 KIPRLFDPWGGYSIIGFGDILLPGLLIAFSLRY 453

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255537495|ref|XP_002509814.1| Minor histocompatibility antigen H13, putative [Ricinus communis] gi|223549713|gb|EEF51201.1| Minor histocompatibility antigen H13, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359474199|ref|XP_002274996.2| PREDICTED: signal peptide peptidase-like 2B-like [Vitis vinifera] gi|297742511|emb|CBI34660.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224058471|ref|XP_002299526.1| predicted protein [Populus trichocarpa] gi|222846784|gb|EEE84331.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|16118856|gb|AAL14629.1|AF417576_1 growth-on protein GRO10 [Euphorbia esula] Back     alignment and taxonomy information
>gi|449452304|ref|XP_004143899.1| PREDICTED: signal peptide peptidase-like 2-like [Cucumis sativus] gi|449495775|ref|XP_004159941.1| PREDICTED: signal peptide peptidase-like 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|12324949|gb|AAG52428.1|AC011622_16 unknown protein; 50290-46846 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21554548|gb|AAM63609.1| growth-on protein GRO10 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18407872|ref|NP_564815.1| signal peptide peptidase-like 2 [Arabidopsis thaliana] gi|75248730|sp|Q8W469.1|SIPL2_ARATH RecName: Full=Signal peptide peptidase-like 2; Short=AtSPPL2; Flags: Precursor gi|17065462|gb|AAL32885.1| Unknown protein [Arabidopsis thaliana] gi|31711956|gb|AAP68334.1| At1g63690 [Arabidopsis thaliana] gi|332196013|gb|AEE34134.1| signal peptide peptidase-like 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297840125|ref|XP_002887944.1| protease-associated domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297333785|gb|EFH64203.1| protease-associated domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query451
TAIR|locus:2026684540 SPPL2 "SIGNAL PEPTIDE PEPTIDAS 0.589 0.492 0.767 2.3e-181
TAIR|locus:2198155540 SPPL4 "SIGNAL PEPTIDE PEPTIDAS 0.592 0.494 0.728 1.5e-155
TAIR|locus:2040971540 SPPL3 "SIGNAL PEPTIDE PEPTIDAS 0.592 0.494 0.490 2.3e-97
TAIR|locus:2198733536 SPPL5 "SIGNAL PEPTIDE PEPTIDAS 0.556 0.468 0.484 1.5e-91
UNIPROTKB|F1Q1B4 580 SPPL2B "Uncharacterized protei 0.727 0.565 0.300 1.4e-36
UNIPROTKB|J9P0Q5 650 SPPL2B "Uncharacterized protei 0.727 0.504 0.300 3.5e-36
UNIPROTKB|F1S8G9 585 LOC100515648 "Uncharacterized 0.745 0.574 0.294 4.4e-36
UNIPROTKB|Q8TCT7 592 SPPL2B "Signal peptide peptida 0.722 0.550 0.298 6.6e-36
RGD|1308556 577 Sppl2b "signal peptide peptida 0.729 0.570 0.288 1.1e-35
UNIPROTKB|Q5PQL3 577 Sppl2b "Signal peptide peptida 0.729 0.570 0.288 1.1e-35
TAIR|locus:2026684 SPPL2 "SIGNAL PEPTIDE PEPTIDASE-LIKE 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1100 (392.3 bits), Expect = 2.3e-181, Sum P(2) = 2.3e-181
 Identities = 205/267 (76%), Positives = 239/267 (89%)

Query:   163 PQDAGASLEKMLLNTSSVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSG 222
             P+     + ++ L   ++GTILCASYWSAWSARE AIE +KLLKDA+DEIP+    G SG
Sbjct:   187 PRRPAVDVAEVFLWLMAIGTILCASYWSAWSAREAAIEHDKLLKDAIDEIPNTNDGG-SG 245

Query:   223 VVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFR 282
             VV+IN+ SA+ FV++AS FLV+LYKLMS WF+ELLV++FCIGGVEGLQTCLVALLSRWF+
Sbjct:   246 VVEINSISAIFFVVLASGFLVILYKLMSYWFVELLVVVFCIGGVEGLQTCLVALLSRWFQ 305

Query:   283 RAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQI 342
             RA ++++KVPF G +S+LTLAV+PFCI FAV+WA+YR  SFAWIGQD+LGIALIITVLQI
Sbjct:   306 RAADTYVKVPFLGPISYLTLAVSPFCIVFAVLWAVYRVHSFAWIGQDVLGIALIITVLQI 365

Query:   343 VHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMF 402
             VH+PNLKVGTVLLSCAF+YDIFWVFVSKKLFHESVMIVV RGDKSGEDGIPMLLKIPRMF
Sbjct:   366 VHVPNLKVGTVLLSCAFLYDIFWVFVSKKLFHESVMIVVTRGDKSGEDGIPMLLKIPRMF 425

Query:   403 DPWGGYSIIGFGDILLPGLIIAFSLRF 429
             DPWGGYSIIGFGDILLPGL+IAF+LR+
Sbjct:   426 DPWGGYSIIGFGDILLPGLLIAFALRY 452
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0006508 "proteolysis" evidence=ISS
GO:0008233 "peptidase activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=IDA
GO:0005768 "endosome" evidence=IDA
TAIR|locus:2198155 SPPL4 "SIGNAL PEPTIDE PEPTIDASE-LIKE 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040971 SPPL3 "SIGNAL PEPTIDE PEPTIDASE-LIKE 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198733 SPPL5 "SIGNAL PEPTIDE PEPTIDASE-LIKE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q1B4 SPPL2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P0Q5 SPPL2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1S8G9 LOC100515648 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TCT7 SPPL2B "Signal peptide peptidase-like 2B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1308556 Sppl2b "signal peptide peptidase-like 2B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5PQL3 Sppl2b "Signal peptide peptidase-like 2B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5Z413SIPL5_ORYSJ3, ., 4, ., 2, 3, ., -0.67520.88910.7398yesno
Q8W469SIPL2_ARATH3, ., 4, ., 2, 3, ., -0.76740.89800.75yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.23LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query451
pfam04258291 pfam04258, Peptidase_A22B, Signal peptide peptidas 9e-75
cd02132139 cd02132, PA_GO-like, PA_GO-like: Protease-associat 6e-66
smart00730249 smart00730, PSN, Presenilin, signal peptide peptid 3e-50
cd02127118 cd02127, PA_hPAP21_like, PA_hPAP21_like: Protease- 3e-12
cd00538126 cd00538, PA, PA: Protease-associated (PA) domain 4e-12
pfam0222596 pfam02225, PA, PA domain 1e-11
cd04818118 cd04818, PA_subtilisin_1, PA_subtilisin_1: Proteas 2e-11
cd02125127 cd02125, PA_VSR, PA_VSR: Protease-associated (PA) 2e-08
cd02123153 cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-a 6e-08
cd04816122 cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease- 7e-07
cd02126126 cd02126, PA_EDEM3_like, PA_EDEM3_like: protease as 2e-06
cd02129120 cd02129, PA_hSPPL_like, PA_hSPPL_like: Protease-as 4e-06
cd04813117 cd04813, PA_1, PA_1: Protease-associated (PA) doma 2e-05
cd02130122 cd02130, PA_ScAPY_like, PA_ScAPY_like: Protease-as 6e-05
cd02122138 cd02122, PA_GRAIL_like, PA _GRAIL_like: Protease-a 1e-04
cd02133143 cd02133, PA_C5a_like, PA_C5a_like: Protease-associ 1e-04
>gnl|CDD|217991 pfam04258, Peptidase_A22B, Signal peptide peptidase Back     alignment and domain information 
 Score =  235 bits (602), Expect = 9e-75
 Identities = 93/232 (40%), Positives = 123/232 (53%), Gaps = 17/232 (7%)

Query: 223 VVDINTASAVLFVLVASCFLVMLYKLMSNWFLE------LLVILFCIGGVEGLQ-TCLVA 275
              I++  A++F + ASC L+ LY    +   E      +L   FCI G   L    L  
Sbjct: 6   TGTIDSRHAIIFPISASCTLLGLYLFFKSLSKEYINSVLVLTGYFCILGAIALAFLILPP 65

Query: 276 LLSRWFRRAGESFIKVP-----FFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDI 330
            + R        F K         G  ++  L     CI FAV W + RK    WI QDI
Sbjct: 66  CIRRLSFMGAYRFPKKKSKLELKNGRFTYSELVALLLCIVFAVWWYVLRKEH--WILQDI 123

Query: 331 LGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGED 390
           LGIAL I V++I+ +PNLKVGT+LLS  F YDIFWVF+S  +F  SVM+ VA G     +
Sbjct: 124 LGIALCINVIKILRLPNLKVGTILLSGLFFYDIFWVFISPYIFGTSVMVTVATGPFDAAE 183

Query: 391 GIPMLLKIPRMFD---PWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHI 439
            +PM L  PR+ D    WG +S++G GDI++PGL+IAF LRF +S   S   
Sbjct: 184 KLPMKLVFPRLNDYPGNWGPFSMLGLGDIVMPGLLIAFCLRFDISKNKSSRT 235

The members of this family are membrane proteins. In some proteins this region is found associated with pfam02225. This family corresponds with Merops subfamily A22B, the type example of which is signal peptide peptidase. There is a sequence-similarity relationship with pfam01080. Length = 291
>gnl|CDD|239047 cd02132, PA_GO-like, PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 Back     alignment and domain information
>gnl|CDD|214793 smart00730, PSN, Presenilin, signal peptide peptidase, family Back     alignment and domain information
>gnl|CDD|239042 cd02127, PA_hPAP21_like, PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) Back     alignment and domain information
>gnl|CDD|238300 cd00538, PA, PA: Protease-associated (PA) domain Back     alignment and domain information
>gnl|CDD|216938 pfam02225, PA, PA domain Back     alignment and domain information
>gnl|CDD|240122 cd04818, PA_subtilisin_1, PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 Back     alignment and domain information
>gnl|CDD|239040 cd02125, PA_VSR, PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) Back     alignment and domain information
>gnl|CDD|239038 cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like Back     alignment and domain information
>gnl|CDD|240120 cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) Back     alignment and domain information
>gnl|CDD|239041 cd02126, PA_EDEM3_like, PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins Back     alignment and domain information
>gnl|CDD|239044 cd02129, PA_hSPPL_like, PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like Back     alignment and domain information
>gnl|CDD|240117 cd04813, PA_1, PA_1: Protease-associated (PA) domain subgroup 1 Back     alignment and domain information
>gnl|CDD|239045 cd02130, PA_ScAPY_like, PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) Back     alignment and domain information
>gnl|CDD|239037 cd02122, PA_GRAIL_like, PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like Back     alignment and domain information
>gnl|CDD|239048 cd02133, PA_C5a_like, PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 451
KOG2442541 consensus Uncharacterized conserved protein, conta 100.0
PF04258298 Peptidase_A22B: Signal peptide peptidase; InterPro 100.0
KOG2443362 consensus Uncharacterized conserved protein [Funct 100.0
smart00730249 PSN Presenilin, signal peptide peptidase, family. 100.0
cd02132139 PA_GO-like PA_GO-like: Protease-associated domain 99.96
cd02129120 PA_hSPPL_like PA_hSPPL_like: Protease-associated d 99.9
cd02126126 PA_EDEM3_like PA_EDEM3_like: protease associated d 99.86
cd02123153 PA_C_RZF_like PA_C-RZF_ like: Protease-associated 99.85
cd02127118 PA_hPAP21_like PA_hPAP21_like: Protease-associated 99.85
cd02122138 PA_GRAIL_like PA _GRAIL_like: Protease-associated 99.82
cd04813117 PA_1 PA_1: Protease-associated (PA) domain subgrou 99.81
cd02125127 PA_VSR PA_VSR: Protease-associated (PA) domain-con 99.8
cd04818118 PA_subtilisin_1 PA_subtilisin_1: Protease-associat 99.78
cd04816122 PA_SaNapH_like PA_SaNapH_like: Protease-associated 99.7
cd02130122 PA_ScAPY_like PA_ScAPY_like: Protease-associated d 99.67
KOG3920193 consensus Uncharacterized conserved protein, conta 99.66
cd04817139 PA_VapT_like PA_VapT_like: Protease-associated dom 99.66
cd02124129 PA_PoS1_like PA_PoS1_like: Protease-associated (PA 99.62
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 99.55
PF02225101 PA: PA domain; InterPro: IPR003137 The PA (Proteas 99.53
cd00538126 PA PA: Protease-associated (PA) domain. The PA dom 99.45
cd02133143 PA_C5a_like PA_C5a_like: Protease-associated domai 99.36
cd04819127 PA_2 PA_2: Protease-associated (PA) domain subgrou 99.25
cd02120126 PA_subtilisin_like PA_subtilisin_like: Protease-as 99.21
cd04815134 PA_M28_2 PA_M28_2: Protease-associated (PA) domain 99.08
PF06550283 DUF1119: Protein of unknown function (DUF1119); In 98.9
cd02128183 PA_TfR PA_TfR: Protease-associated domain containi 98.79
COG3389277 Uncharacterized protein conserved in archaea [Func 98.61
cd04822151 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do 98.31
cd04814142 PA_M28_1 PA_M28_1: Protease-associated (PA) domain 98.23
cd02121220 PA_GCPII_like PA_GCPII_like: Protease-associated d 98.21
cd04820137 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do 98.14
cd02131153 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso 97.91
cd04821157 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do 94.88
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=6.7e-107  Score=827.16  Aligned_cols=424  Identities=50%  Similarity=0.831  Sum_probs=399.1

Q ss_pred             HHhhcccccccccceeccCCCCCCCCCCcCeEEEEEeeeecCccceeEEecccccCCccccccCCcceEEEEecCCCCCC
Q 013003           17 SLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCC   96 (451)
Q Consensus        17 ~~~~~~~~~~~~~~~~~d~~~p~~p~c~~~f~lv~v~~~v~g~e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC   96 (451)
                      +++-......++|+.|.++..|++|||+|+||++|+++|+||++..++.++.|+||..++...+.+...++...+|.|.|
T Consensus         8 ~l~g~~~~v~a~~~~~~~~~~~~s~gc~nd~~~l~~~~w~~~~~~~~~a~~~~~~~~t~~~~~~~a~~~~~a~~~pld~c   87 (541)
T KOG2442|consen    8 LLLGLGSFVTAGDGGHTGNSHPKSPGCSNDFQMLKVPTWVNGVEYLEFAGMLARFGITLPSKCKAADIPHLAQVDPLDSC   87 (541)
T ss_pred             hhhhhhheEeecccccccccccCCCCCcCceEEEeccccccccchhhhhhhhhhcCCcCCCCccccccchhhhcCCcccc
Confidence            33333456678999999999999999999999999999999999999999999999999988877777788899999999


Q ss_pred             CCCCCCCcceEEEEEcCCCCHHHHHHHHHHcCCcEEEEEeccCcccccccCCCCCCCCcceeEEEechhhHHHHHHHHhc
Q 013003           97 SMPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLN  176 (451)
Q Consensus        97 ~~~~~~lsG~IvLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~  176 (451)
                      +++.+.++|+++++.||+|+|++|+++||++||+|++|+||.+++..|+|++.++..+++||++||++++|+.+.+....
T Consensus        88 s~~~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~  167 (541)
T KOG2442|consen   88 STLQSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRS  167 (541)
T ss_pred             CCCCccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhcc
Confidence            99999999999999999999999999999999999999999999999999988888999999999999999999988777


Q ss_pred             ccc------------------------ceeeeecceeccchhhHHHHHHHhhccCCCCCCccccccCCcCeeeeccccee
Q 013003          177 TSS------------------------VGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAV  232 (451)
Q Consensus       177 g~~------------------------V~TV~~~s~WS~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~A~  232 (451)
                      +.+                        |+||++|||||+++++|+..|+++.++|..+++.|+++++|+|.+++|+..|+
T Consensus       168 ~~~V~~~lYaPk~P~vD~~~v~iwlmAVgTVa~ggyWs~~t~~~~~~~a~~~~~d~~s~~~~~~~~~e~~~vd~s~i~~~  247 (541)
T KOG2442|consen  168 NDNVELALYAPKRPAVDYAMVFIWLMAVGTVACGGYWSGLTEREKAIEADRLLDDDSSSEGNTKETKEEEVVDISPITAV  247 (541)
T ss_pred             CCeEEEEEECCCCCCccHHHHHHHHHHHhHhhccchhhhccChhhhhhhhhhcccccccccccccCCccccEEeeeeEEE
Confidence            665                        99999999999999999999999999988888888899999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCCeeeeccccccccchhhhhhhhhhhh
Q 013003          233 LFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFA  312 (451)
Q Consensus       233 ~Fpv~as~~Ll~Ly~f~~~~~~~ll~~~F~i~g~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~  312 (451)
                      .|++++|.+|++||||+++ ++|+++++|||+|+.+||+|+.++++|++.+..+.+...|..|+.++..+++.++|++++
T Consensus       248 ~fvv~~c~~LvLlyfF~~~-~V~v~iiif~i~g~~gLy~Cl~~lv~r~~~~~~~~~~~~~~l~~~~~~~l~l~~~Cia~a  326 (541)
T KOG2442|consen  248 FFVVTACGFLVLLYFFYSY-LVYVLIIIFCIGGAQGLYNCLAALVHRLPYGAARFPTLAPRLGNMSYRLLFLSILCIAVA  326 (541)
T ss_pred             EehhhhHHHHHHHHHHHHH-HHHHHhhheeecccchHHHHHHHHHhhhhhhcccccccccccCChhHHHHHHHHhhhhee
Confidence            9999999999999999965 999999999999999999999999999876655556677888899999999999999999


Q ss_pred             hhhhheeccccceeecchhHHHHHHHHHHhhccCchhHHHHHHHHHhhhhheeeeeeccccc--ceeEEEeecCCCCCCC
Q 013003          313 VVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFH--ESVMIVVARGDKSGED  390 (451)
Q Consensus       313 ~~w~~~~~~~~~W~l~nilgi~~~i~~l~~i~l~~~k~~~iLL~~lf~YDifwVF~sp~~f~--~sVMv~VA~~~~~~~~  390 (451)
                      ++|+++|||+|+|++||++|||+|+++++.+||||+|+|++||+++|+|||||||+||++||  ||||++||+|+++++|
T Consensus       327 V~W~v~R~e~~AwilqDvLGIalci~vLk~vRLPnlK~~tiLL~c~f~YDiF~VFitp~~t~~geSVMieVA~G~~s~~E  406 (541)
T KOG2442|consen  327 VVWAVFRNEDWAWILQDVLGIALCITVLKTVRLPNLKVCTILLLCLFLYDIFFVFITPFITKNGESVMIEVARGPSSTEE  406 (541)
T ss_pred             EEEEEeecCchHHHHHhhHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHhhheeeeehhhccCCceEEEEEecCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999997  9999999999999999


Q ss_pred             CCCEEEEecccc-----CCCCceeeccCcchhhHHHHHHHHHHhhcccCCCCccch
Q 013003          391 GIPMLLKIPRMF-----DPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHIPI  441 (451)
Q Consensus       391 ~~P~~l~~P~~~-----~~~~~~s~LGlGDIviPGl~i~~~~rfD~~~~s~~~~~~  441 (451)
                      ++||+|++||++     ++|++|||||||||++||++||||+|||...++.|++++
T Consensus       407 kiPMlLkVPrl~~s~~~~~~~~~silGFGDIl~PGlLVa~c~RfD~~~~~~~~iYf  462 (541)
T KOG2442|consen  407 KIPMLLKVPRLFFSVLSDPWGGYSILGFGDILVPGLLVAFCLRFDVQVNSVSNIYF  462 (541)
T ss_pred             CcceEEEcchhccccccccCCCeeEeeecccccchHHHHHHHHhhhhccccceeEE
Confidence            999999999999     899999999999999999999999999999998666654

>PF04258 Peptidase_A22B: Signal peptide peptidase; InterPro: IPR007369 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2443 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00730 PSN Presenilin, signal peptide peptidase, family Back     alignment and domain information
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 Back     alignment and domain information
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like Back     alignment and domain information
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins Back     alignment and domain information
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like Back     alignment and domain information
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) Back     alignment and domain information
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like Back     alignment and domain information
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 Back     alignment and domain information
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) Back     alignment and domain information
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 Back     alignment and domain information
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) Back     alignment and domain information
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) Back     alignment and domain information
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] Back     alignment and domain information
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 Back     alignment and domain information
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] Back     alignment and domain information
>cd00538 PA PA: Protease-associated (PA) domain Back     alignment and domain information
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase Back     alignment and domain information
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 Back     alignment and domain information
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases Back     alignment and domain information
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 Back     alignment and domain information
>PF06550 DUF1119: Protein of unknown function (DUF1119); InterPro: IPR010545 This family consists of several hypothetical archaeal proteins of unknown function Back     alignment and domain information
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) Back     alignment and domain information
>COG3389 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 Back     alignment and domain information
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 Back     alignment and domain information
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like Back     alignment and domain information
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 Back     alignment and domain information
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) Back     alignment and domain information
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query451
3icu_A194 E3 ubiquitin-protein ligase RNF128; E3 ligase, ene 2e-12
1xf1_A 926 C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
3i6s_A649 Subtilisin-like protease; PA-domain, FN3-domain, h 4e-04
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} Length = 194 Back     alignment and structure
 Score = 65.2 bits (158), Expect = 2e-12
 Identities = 20/141 (14%), Positives = 41/141 (29%), Gaps = 14/141 (9%)

Query: 64  FVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCS----------MPKHKYAGDVIMVDRG 113
            +     +G     +      +        + C+                   + ++ RG
Sbjct: 54  ELSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRG 113

Query: 114 N-CKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEK 172
             C F  K ++A   GAS  +I N      +++         + I A+M+    G  + +
Sbjct: 114 GGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPG--AVDIVAIMIGNLKGTKILQ 171

Query: 173 MLLNTSSV-GTILCASYWSAW 192
            +     V   I        W
Sbjct: 172 SIQRGIQVTMVIEVGKKHGPW 192
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query451
3icu_A194 E3 ubiquitin-protein ligase RNF128; E3 ligase, ene 99.83
4hyg_A301 Putative uncharacterized protein; protease, membra 99.69
3iib_A444 Peptidase M28; YP_926796.1, structural genomics, J 98.87
2ek8_A421 Aminopeptidase; metalloproteinase, hydrolase; 1.80 98.79
3i6s_A649 Subtilisin-like protease; PA-domain, FN3-domain, h 98.42
3fed_A 707 Glutamate carboxypeptidase III; metallopeptidase, 98.41
3kas_A 640 Transferrin receptor protein 1; transferrin recept 98.27
1xf1_A 926 C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St 98.03
1y9z_A441 Alkaline serine protease; subtilisin-like alpha/be 97.94
3vta_A621 Cucumisin; subtilisin-like fold, serine protease, 91.91
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} Back     alignment and structure
Probab=99.83  E-value=1.2e-19  Score=170.24  Aligned_cols=128  Identities=17%  Similarity=0.196  Sum_probs=101.2

Q ss_pred             Eeeeec--C--ccceeEEecccccCCccccccCCcceEEEEecC---CCCCCCCCCC---C-------CcceEEEEEcCC
Q 013003           52 VQTWID--G--IENEEFVGVGARFGTTIVSKEKNANQIHLTLSH---PRDCCSMPKH---K-------YAGDVIMVDRGN  114 (451)
Q Consensus        52 v~~~v~--g--~e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~---p~daC~~~~~---~-------lsG~IvLV~RG~  114 (451)
                      +-+|.|  +  +...++.+.+|+||..+|.+.   .++.++.+.   |.+||++.+.   .       .+|||+||+||+
T Consensus        38 n~sy~d~~~~~n~t~~~~~e~a~FG~~~p~~~---v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~  114 (194)
T 3icu_A           38 NVSWRVPHTGVNRTVWELSEEGVYGQDSPLEP---VAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGG  114 (194)
T ss_dssp             EEEEECCSSCTTCEEEEEEEEEEECTTSCCSC---EEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCT
T ss_pred             EEEEECCCCCccceeeecccccccCCCCCCCC---cEEEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEEECCC
Confidence            336664  3  445568899999999998754   567777663   7899998762   1       368999999999


Q ss_pred             -CCHHHHHHHHHHcCCcEEEEEeccC---cccccccCCCCCCCCcceeEEEechhhHHHHHHHHhcccc-ceeeeecc
Q 013003          115 -CKFTTKANIAEAAGASALLIINNQK---ELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSS-VGTILCAS  187 (451)
Q Consensus       115 -CsF~~Ka~nAq~aGA~avIV~n~~~---~l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~-V~TV~~~s  187 (451)
                       |+|.+|++|||++||+|+||||+.+   ....|...     ...+||+++|++++|+.|++++++|.+ ..|+..++
T Consensus       115 ~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~-----~~~~IPsv~Is~~~G~~L~~~L~~G~~Vtvti~vg~  187 (194)
T 3icu_A          115 GCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHP-----GAVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEVGK  187 (194)
T ss_dssp             TCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCT-----TCCSSEEEEECHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred             CcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCC-----CCCceeEEEECHHHHHHHHHHHHCCCeEEEEEECCC
Confidence             9999999999999999999999852   34566532     135799999999999999999999987 55555554
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A Back     alignment and structure
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} Back     alignment and structure
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Back     alignment and structure
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Back     alignment and structure
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... Back     alignment and structure
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A Back     alignment and structure
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Back     alignment and structure
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Back     alignment and structure
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query451
d1de4c2193 Transferrin receptor ectodomain, apical domain {Hu 98.57
d3bi1a2233 Glutamate carboxypeptidase II {Human (Homo sapiens 98.33
>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: PA domain
family: PA domain
domain: Transferrin receptor ectodomain, apical domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=4.1e-08  Score=89.59  Aligned_cols=90  Identities=18%  Similarity=0.161  Sum_probs=64.7

Q ss_pred             ceEEEEecCCCCCCCC-----CCCCCcceEEEEEcCCCCHHHHHHHHHHcCCcEEEEEeccCcc------------cccc
Q 013003           83 NQIHLTLSHPRDCCSM-----PKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKEL------------YKMV  145 (451)
Q Consensus        83 ~~~~Lv~~~p~daC~~-----~~~~lsG~IvLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~l------------~~m~  145 (451)
                      .+++++.++   -|..     +..+++|||+|++||+|.|.+|++|||++||+|+|||+|..+.            ..+.
T Consensus        39 v~g~lVy~n---~G~~~Df~~L~~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~  115 (193)
T d1de4c2          39 VTGKLVHAN---FGTKKDFEDLYTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLG  115 (193)
T ss_dssp             EEECEEECS---TTCHHHHHTCSSCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSS
T ss_pred             eeEEEEEcc---CCCHHHHHHhccccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccccC
Confidence            466777774   2222     2247899999999999999999999999999999999874210            1111


Q ss_pred             cCCCC----------------CCCCcceeEEEechhhHHHHHHHHh
Q 013003          146 CDPDE----------------TDLDIHIPAVMMPQDAGASLEKMLL  175 (451)
Q Consensus       146 ~~~~~----------------~~~~i~IPvv~Is~~~G~~L~~~L~  175 (451)
                      .+|..                ...--+||+.-|+++|++.|.+.|.
T Consensus       116 ~GDPlTPg~ps~~~~~~~~~~~~~lP~IP~~PIS~~dA~~lL~~L~  161 (193)
T d1de4c2         116 TGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME  161 (193)
T ss_dssp             SSCTTSTTSCCCGGGTCCSCCCTTSCSSCEEECCHHHHHHHHTTBC
T ss_pred             CCCCCCCCcccccccccCccccCCCCcCCeeeCCHHHHHHHHHHcC
Confidence            11100                0112369999999999999999885
>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure