Citrus Sinensis ID: 013020

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-
Protein Sequence
MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDGMEEEC
Secondary Structure (PSIPRED)
cEEEEEEHHccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcEEEEEEEEEccccccccHHHHHHHHHHHHHHHHccccEEEccccccccccHHHEEEEEEEcccccccccccHHHHcccccccccccccccccccccEEccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHcHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHcccccccccHHHcccccccccccccccccEEcccEEEEEccccccccccccccccEEEEHHHHHHHHHHHHHccHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
Coil and Loop (DISEMBL)
MVLLWSTtilpgakppacdqlrngcesatwsqLMPLYFAFGLmslgsggirssslafgaeqldkgdgtkskgaLQSYFSWYYVFVSASSIVAVTCIVYIQdnlgwkvgfGVPAVIMLLSALSFFlaspfyvkskantsllpglTQVLVASFKnrrtklptqateemyhhgkgsmrlmpsenLRFLNKACmakhpeqdltpdgrasnpnslcTVEQVEELKALIKASsmdrhvtpnfeipsgsfnIFAILTLTIWIGLYdravlplaskikgkpcqlsLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQtefyytelpksmsSIASTLSGAGLSAANLVASLIMNAVDDitkrggnggwipsninkghyDYYYWLLTALSMANFLYYLACCKaygpfkgrvgtafddkdgmeeec
Flexible Loop (DISEMBL)
mvllwsttilpgakppacDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQdltpdgrasnpnSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKrggnggwipsniNKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDkdgmeeec
Low Complexity Region (SEG)
MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFglmslgsggirssslAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMllsalsfflasPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMssiastlsgaglsaanlvaslIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDGMEEEC
Disordered region (IsUnstruct)
**LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIR***LAF**************GALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFK**********************************************************CTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTA***********
Disordered Region (DISOPRED)
MVLLWSTTILPGAKP**************WSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKG*****KGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLP*******************SENLRFLNKACMAKHPEQ*****GRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYG********************
Disordered Region (DISEMBL)
MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDGMEEEC
Disordered Region (DISPRO)
MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQ***P*GRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKG****************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDGMEEEC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	451	2.2.26 [Sep-21-2011]
Q9M817	607	Probable peptide transpor	yes	no	0.997	0.741	0.489	1e-128
Q8LPL2	591	Probable peptide/nitrate	no	no	0.991	0.756	0.485	1e-125
Q9M390	570	Peptide transporter PTR1	no	no	0.953	0.754	0.348	2e-75
Q9LYD5	481	Putative peptide/nitrate	no	no	0.835	0.783	0.371	5e-71
Q8RX77	620	Nitrate transporter 1.7 O	no	no	0.949	0.690	0.331	8e-71
Q9M9V7	587	Probable peptide/nitrate	no	no	0.931	0.715	0.328	2e-70
Q9LV10	616	Probable peptide/nitrate	no	no	0.935	0.685	0.321	3e-70
Q9LFB8	570	Peptide transporter PTR5	no	no	0.946	0.749	0.341	3e-69
Q93Z20	590	Probable peptide/nitrate	no	no	0.917	0.701	0.35	1e-68
Q944G5	636	Probable peptide/nitrate	no	no	0.933	0.661	0.322	5e-68

>sp|Q9M817|PTR6_ARATH Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1

 Score =  458 bits (1178), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/480 (48%), Positives = 318/480 (66%), Gaps = 30/480 (6%)

Query: 1   MVLLWSTTILPGAKPPACDQLRNG--CESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFG 58
           MVLLW T +LP  KP  CD    G  C S+T SQL  LY AF L+S+GSGGIR  SLAFG
Sbjct: 107 MVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTASQLALLYSAFALISIGSGGIRPCSLAFG 166

Query: 59  AEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLL 118
           A+QLD  +  K++  L+S+F WYY   + + ++A T IVYIQ++LGWK+GFGVPAV+ML+
Sbjct: 167 ADQLDNKENPKNERVLESFFGWYYASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVLMLI 226

Query: 119 SALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATE-EMYHHGKGSMRLM 177
           +AL F LASP YV      SL  GL Q +VA++K R+  LP      + Y+H K S    
Sbjct: 227 AALLFILASPLYVTRGVTKSLFTGLAQAIVAAYKKRKLSLPDHHDSFDCYYHMKDSEIKA 286

Query: 178 PSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIK------------- 224
           PS+ LRFLNKAC+  + E+++  DG A NP  LCT ++VEELKALIK             
Sbjct: 287 PSQKLRFLNKACLISNREEEIGSDGFALNPWRLCTTDKVEELKALIKVIPIWSTGIMMSI 346

Query: 225 -----------ASSMDRHVTPN---FEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIK 270
                      A+SMDR ++ +   F++P+GSF +F I+ L +W+ LYDRAV+PLASKI+
Sbjct: 347 NTSQSSFQLLQATSMDRRLSRHGSSFQVPAGSFGMFTIIALALWVILYDRAVIPLASKIR 406

Query: 271 GKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPY 330
           G+P +LS+KLRMG+GL  S  +M   A+VE+ RR  AI++G +++  AVV +SAMW +P 
Sbjct: 407 GRPFRLSVKLRMGLGLFMSFLAMAISAMVESFRRKKAISQGYANNSNAVVDISAMWLVPQ 466

Query: 331 LVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRG 390
            VL GLA A   IGQTEF+YTE PKSMSSIA++L G G++ A+L+AS+++NAV+++T R 
Sbjct: 467 YVLHGLAEALTAIGQTEFFYTEFPKSMSSIAASLFGLGMAVASLLASVVLNAVNELTSRN 526

Query: 391 GNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDGMEEE 450
           G   W+  NINKGHY+YYYW+L  +S  N +YY+ C  +YGP   +V     +    EEE
Sbjct: 527 GKESWVSDNINKGHYNYYYWVLAIMSFINVIYYVICSWSYGPLVDQVRNGRVNGVREEEE 586

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPL2|PTR32_ARATH Probable peptide/nitrate transporter At3g16180 OS=Arabidopsis thaliana GN=At3g16180 PE=2 SV=2

 Score =  447 bits (1149), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/478 (48%), Positives = 309/478 (64%), Gaps = 31/478 (6%)

Query: 1   MVLLWSTTILPGAKPPACDQLR-NGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGA 59
           MV+LW T +LP  KP  C       C SAT SQL  LY AF L+S+GSGGIR  SLAFGA
Sbjct: 109 MVVLWLTAMLPQVKPSPCVATAGTNCSSATSSQLALLYTAFALISIGSGGIRPCSLAFGA 168

Query: 60  EQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLS 119
           +QLD  +  K++  L+S+F WYY   S + ++A T IVYIQD+LGWK+GFG+PA++MLL+
Sbjct: 169 DQLDNKENPKNERVLESFFGWYYASSSVAVLIAFTVIVYIQDHLGWKIGFGIPAILMLLA 228

Query: 120 ALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQA-TEEMYHHGKGSMRLMP 178
              F  ASP YVK   + SL  GL QV+ A++  R   LP    + + Y+  K S    P
Sbjct: 229 GFLFVFASPLYVKRDVSKSLFTGLAQVVAAAYVKRNLTLPDHHDSRDCYYRLKDSELKAP 288

Query: 179 SENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIK-------------- 224
           S+ LRFLNKAC   + ++DL  DG A N   LCT +QVE+LKAL+K              
Sbjct: 289 SDKLRFLNKACAISNRDEDLGSDGLALNQWRLCTTDQVEKLKALVKVIPVWSTGIMMSIN 348

Query: 225 ----------ASSMDRHVTPN--FEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGK 272
                     A SMDR ++ N  F+IP+GSF +F I+ L  W+ LYDRA+LPLASKI+G+
Sbjct: 349 VSQNSFQLLQAKSMDRRLSSNSTFQIPAGSFGMFTIIALISWVVLYDRAILPLASKIRGR 408

Query: 273 PCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLV 332
           P ++++K+RMG+GL  S  +M   A VE  RR  AI++G+++D  + V +SAMW +P  V
Sbjct: 409 PVRVNVKIRMGLGLFISFLAMAVSATVEHYRRKTAISQGLANDANSTVSISAMWLVPQYV 468

Query: 333 LSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGN 392
           L GLA A   IGQTEF+YTE PKSMSSIA++L G G++ AN++AS+I+NAV + +K+ GN
Sbjct: 469 LHGLAEALTGIGQTEFFYTEFPKSMSSIAASLFGLGMAVANILASVILNAVKNSSKQ-GN 527

Query: 393 GGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDGMEEE 450
             WI  NINKGHYDYYYW+L  LS  N +YY+ C  +YGP   +V    D  +GM +E
Sbjct: 528 VSWIEDNINKGHYDYYYWVLAILSFVNVIYYVVCSWSYGPTVDQVRN--DKVNGMRKE 583

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  283 bits (723), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 164/470 (34%), Positives = 253/470 (53%), Gaps = 40/470 (8%)

Query: 1   MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAE 60
           M LL  +  +PG KP  C+   + C   + SQ    + A  +++LG+GGI+    +FGA+
Sbjct: 110 MTLLTLSASVPGLKPGNCNA--DTCHPNS-SQTAVFFVALYMIALGTGGIKPCVSSFGAD 166

Query: 61  QLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSA 120
           Q D+ D  + K    S+F+W+Y  ++  +++A T +V+IQ N+GW  GFGVP V M+++ 
Sbjct: 167 QFDENDENE-KIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAV 225

Query: 121 LSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQ-----ATEEMYHHGKGSMR 175
             FF  S FY   +   S L  + QV+VA+F+    K+P        T +   + KGS +
Sbjct: 226 CFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRK 285

Query: 176 LMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALI------------ 223
           L+ ++NL+F +KA  A   + D   DG   NP  LC+V QVEELK++I            
Sbjct: 286 LVHTDNLKFFDKA--AVESQSDSIKDGEV-NPWRLCSVTQVEELKSIITLLPVWATGIVF 342

Query: 224 -------------KASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIK 270
                        + ++MD+H+  NFEIPS S ++F  +++  W  +YD+ ++PLA K  
Sbjct: 343 ATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFT 402

Query: 271 GKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPY 330
                 +   RMGIGL+ S  +M    ++E  R          D  +  + MS  WQ+P 
Sbjct: 403 RNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQ--IHMSIFWQIPQ 460

Query: 331 LVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRG 390
            +L G A  F  IGQ EF+Y + P +M S+ S LS   ++  N ++++++  V  ITK+ 
Sbjct: 461 YLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKN 520

Query: 391 GNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTA 440
           G  GWIP N+N+GH DY+++LL  LS  NFL YL   K Y  +K  VG A
Sbjct: 521 GKPGWIPDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRY-KYKKAVGRA 569

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYD5|PTR48_ARATH Putative peptide/nitrate transporter At5g11570 OS=Arabidopsis thaliana GN=At5g11570 PE=2 SV=1

 Score =  268 bits (686), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 161/433 (37%), Positives = 243/433 (56%), Gaps = 56/433 (12%)

Query: 1   MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAE 60
           MVLLW TTI+     P CD+L N C+  T  + + LY  F L ++G+GG+RSS LAF A+
Sbjct: 99  MVLLWLTTIIR----PECDKLTNVCQPTTLLKSVLLYSFFALTAIGAGGVRSSCLAFAAD 154

Query: 61  QLDKGDGTK-SKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLS 119
           QL     ++ +  +L++ F+WYY  V  +  ++ + +V++Q   GW++GFGV    M LS
Sbjct: 155 QLQPNQTSRVTTSSLETLFNWYYFSVMVACFLSQSLLVFVQTTYGWQIGFGVSVAAMALS 214

Query: 120 ALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPS 179
              FF ASP+YV+ +  T                R ++ P +             R+   
Sbjct: 215 VALFFAASPYYVRFQKPT----------------RNSRNPWKLC-----------RVQQV 247

Query: 180 ENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHV-TPNFEI 238
           E+L+ L           ++ P        SL T  QV  +  +++A +MDRH     FEI
Sbjct: 248 EDLKSL----------INVIPIWSTGIILSLVTACQVSFI--VLQAKTMDRHTFIQGFEI 295

Query: 239 PSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAI 298
           P GS+ IF +++  +++GLYD  ++PL S    +P +L + +RM  G + S   ++A A 
Sbjct: 296 PPGSYGIFLVISFLLFLGLYDLVIVPLLSWALREPFRLGVMVRMWAGYVISVLCISALAA 355

Query: 299 VEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMS 358
            E ARR  A +E  +       ++SAMW LPY++L G+A A N I Q EF+Y+ELPK+MS
Sbjct: 356 TEYARRKTARDESGT-------KLSAMWLLPYMILGGIAEALNTIAQNEFFYSELPKTMS 408

Query: 359 SIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMA 418
           S+A+TLS   ++AA+L++S I+  VD  T     G WI  NI++GH DYYYWLL  LS+ 
Sbjct: 409 SVATTLSSLNMAAASLISSWIITIVDVTTY----GSWITENIDEGHLDYYYWLLVGLSLL 464

Query: 419 NFLYYLACCKAYG 431
           N LY++ C K+YG
Sbjct: 465 NVLYFVWCKKSYG 477

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RX77|PTR21_ARATH Nitrate transporter 1.7 OS=Arabidopsis thaliana GN=NRT1.7 PE=1 SV=1

 Score =  268 bits (684), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 155/468 (33%), Positives = 245/468 (52%), Gaps = 40/468 (8%)

Query: 7   TTILPGAKPPACD-QLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKG 65
           T   P   P +C+ Q    C      Q+  L      +S+GSGGIR  S+ FG +Q D+ 
Sbjct: 143 TASFPQLHPASCNSQDPLSCGGPNKLQIGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQR 202

Query: 66  DGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 125
                KG + S+F+WYY+  +   I+  T +VYIQD + W +GF +P  +M L+ + FF 
Sbjct: 203 TEEGVKG-VASFFNWYYMTFTVVLIITQTVVVYIQDQVSWIIGFSIPTGLMALAVVMFFA 261

Query: 126 ASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHG---KGSM--RLMPSE 180
               YV  K   S+  G+ QV+VA+ K R+ KLP +    + ++    K S+  +L  S 
Sbjct: 262 GMKRYVYVKPEGSIFSGIAQVIVAARKKRKLKLPAEDDGTVTYYDPAIKSSVLSKLHRSN 321

Query: 181 NLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIK---------------- 224
             R L+KA +    E DLTP+G  ++   LC+V++VEE+K LI+                
Sbjct: 322 QFRCLDKAAVVI--EGDLTPEGPPADKWRLCSVQEVEEVKCLIRIVPIWSAGIISLAAMT 379

Query: 225 ---------ASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQ 275
                    A  MDR++ P FEIP+GS ++ ++LT+ I++  YDR  +P   +I G    
Sbjct: 380 TQGTFTVSQALKMDRNLGPKFEIPAGSLSVISLLTIGIFLPFYDRVFVPFMRRITGHKSG 439

Query: 276 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSG 335
           ++L  R+G G++F+  SM    IVE  RR  +IN G   D   +  MS  W  P L+L G
Sbjct: 440 ITLLQRIGTGIVFAIFSMIVAGIVERMRRIRSINAG---DPTGMTPMSVFWLSPQLILMG 496

Query: 336 LAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGW 395
           L  AFN+IGQ EF+ ++ P+ M SIA++L     + ++ ++S ++  V   +       W
Sbjct: 497 LCEAFNIIGQIEFFNSQFPEHMRSIANSLFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDW 556

Query: 396 IPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDD 443
           +  N+N G  DY+Y+L+  L + N +Y+  C + Y   + +VG   +D
Sbjct: 557 LNKNLNAGKLDYFYYLIAVLGVVNLVYFWYCARGY---RYKVGLPIED 601

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in phloem loading and nitrate remobilization from the older leaves to other tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9V7|PTR8_ARATH Probable peptide/nitrate transporter At1g18880 OS=Arabidopsis thaliana GN=At1g18880 PE=2 SV=1

 Score =  266 bits (680), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 150/457 (32%), Positives = 251/457 (54%), Gaps = 37/457 (8%)

Query: 7   TTILPGAKPPAC-DQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKG 65
           T ++    P  C  ++ + C   +  Q+M L  A  L+ +G+GGIR  +L FGA+Q D  
Sbjct: 111 TAVIHPLHPAQCAKEIGSVCNGPSIGQIMFLAGAMVLLVIGAGGIRPCNLPFGADQFDPK 170

Query: 66  DGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 125
                +G ++S+F+WY+   + + +V++T IVY+Q N+ W +G  +PA++MLL  + FF 
Sbjct: 171 TKEGKRG-IESFFNWYFFTFTFAQMVSLTLIVYVQSNVSWSIGLAIPAILMLLGCIIFFA 229

Query: 126 ASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMR---LMPSENL 182
            S  YVK KA+ S +  +T+V+V + K RR K P     E+Y++     +   L  +E  
Sbjct: 230 GSKLYVKVKASGSPIHSITRVIVVAIKKRRLK-PV-GPNELYNYIASDFKNSKLGHTEQF 287

Query: 183 RFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSM-------------- 228
           RFL+K+ +    ++ L  DG   +   LC+++QVEE+K +I+   +              
Sbjct: 288 RFLDKSAIQTQDDK-LNKDGSPVDAWKLCSMQQVEEVKCVIRVLPVWLSAALFYLAYIQQ 346

Query: 229 -----------DRHVTP-NFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQL 276
                      DR + P +F+IP+GS+ +F +L +TI+I +YDR ++P   K  G+   +
Sbjct: 347 TTYTIFQSLQSDRRLGPGSFQIPAGSYTVFLMLGMTIFIPIYDRVLVPFLRKYTGRDGGI 406

Query: 277 SLKLRMGIGLLFSTASMTAWAIVEAARRSIAINE---GISDDLRAVVQMSAMWQLPYLVL 333
           +   R+G GL     SM   AIVE  RR +A+ +   G++    A+  MS MW +P LVL
Sbjct: 407 TQLQRVGAGLFLCITSMMVSAIVEQYRRKVALTKPTLGLAPRKGAISSMSGMWLIPQLVL 466

Query: 334 SGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNG 393
            G+A A   +GQ EFYY + P++M S A +L   G+  A+ +++ +++AV D T+    G
Sbjct: 467 MGIADALAGVGQMEFYYKQFPENMRSFAGSLYYCGIGLASYLSTFLLSAVHDTTEGFSGG 526

Query: 394 GWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 430
            W+P ++NKG  +Y+Y+L+  +   N  Y+L     Y
Sbjct: 527 SWLPEDLNKGRLEYFYFLVAGMMTLNLAYFLLVSHWY 563

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV10|PTR53_ARATH Probable peptide/nitrate transporter At5g62680 OS=Arabidopsis thaliana GN=At5g62680 PE=2 SV=1

 Score =  266 bits (679), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 147/457 (32%), Positives = 248/457 (54%), Gaps = 35/457 (7%)

Query: 7   TTILPGAKPPACDQLRNG-CESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKG 65
           T  +P   P AC    +  C   +  Q+  L    G + +G+GGIR  +LAFGA+Q +  
Sbjct: 135 TAAVPQLHPAACGTAADSICNGPSGGQIAFLLMGLGFLVVGAGGIRPCNLAFGADQFNPK 194

Query: 66  DGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 125
             +  +G + S+F+WY+   + + I+++T +VY+Q N+ W +G  +PAV+M L+ L FF 
Sbjct: 195 SESGKRG-IDSFFNWYFFTFTFAQILSLTLVVYVQSNVSWTIGLTIPAVLMFLACLIFFA 253

Query: 126 ASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHH---GKGSMRLMPSENL 182
               YVK KA+ S L G+ QV+  + K R  K   Q    +Y++      + +L  ++  
Sbjct: 254 GDKLYVKIKASGSPLAGIAQVIAVAIKKRGLKPAKQPWLNLYNYYPPKYANSKLKYTDQF 313

Query: 183 RFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIK------ASSM-------- 228
           RFL+KA +   PE  L PDG+ ++P  LCT++QVEE+K +++      ASS+        
Sbjct: 314 RFLDKAAILT-PEDKLQPDGKPADPWKLCTMQQVEEVKCIVRVLPIWFASSIYYLTITQQ 372

Query: 229 -----------DRHV-TPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQL 276
                      DR + +  F IP+ ++ +F +  +T++I +YDR ++P   +I G    +
Sbjct: 373 MTYPVFQALQSDRRLGSGGFVIPAATYVVFLMTGMTVFIVVYDRVLVPTMRRITGLDTGI 432

Query: 277 SLKLRMGIGLLFSTASMTAWAIVEAARRSIAINE---GISDDLRAVVQMSAMWQLPYLVL 333
           +L  R+G G+ F+TAS+     VE  RR+ A+ +   G++     +  MSAMW +P L L
Sbjct: 433 TLLQRIGTGIFFATASLVVAGFVEERRRTFALTKPTLGMAPRKGEISSMSAMWLIPQLSL 492

Query: 334 SGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNG 393
           +G+A AF  IGQ EFYY + P++M S A ++   G   ++ + S ++  V   T+    G
Sbjct: 493 AGVAEAFAAIGQMEFYYKQFPENMRSFAGSIFYVGGGVSSYLGSFLIATVHRTTQNSSGG 552

Query: 394 GWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 430
            W+  ++NKG  D +Y+++  +   NF Y+L   + Y
Sbjct: 553 NWLAEDLNKGRLDLFYFMIAGILAVNFAYFLVMSRWY 589

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  263 bits (671), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 161/472 (34%), Positives = 246/472 (52%), Gaps = 45/472 (9%)

Query: 1   MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAE 60
           M LL  +  +PG  P    +    C  AT  Q    + A  L++LG+GGI+    +FGA+
Sbjct: 111 MTLLTISASVPGLTPTCSGET---CH-ATAGQTAITFIALYLIALGTGGIKPCVSSFGAD 166

Query: 61  QLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSA 120
           Q D  D  K K +  S+F+W+Y  ++  +++A + +V+IQ N+GW  G GVP V M ++ 
Sbjct: 167 QFDDTD-EKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAV 225

Query: 121 LSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGK-------GS 173
           + FF  S FY   K   S L  + QV+VAS +  + K+P    E + +  +       GS
Sbjct: 226 VFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPED--ESLLYENQDAESSIIGS 283

Query: 174 MRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIK--------- 224
            +L  ++ L F +KA  A   E D     ++S+   LCTV QVEELKALI+         
Sbjct: 284 RKLEHTKILTFFDKA--AVETESDNKGAAKSSSWK-LCTVTQVEELKALIRLLPIWATGI 340

Query: 225 ----------------ASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASK 268
                            +++D+H+ PNF+IPS S ++F  L++  W  +YD+ ++P A K
Sbjct: 341 VFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARK 400

Query: 269 IKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQL 328
             G     +   R+GIGL+ S  SM +  I+E AR +      + ++    + M+  WQ+
Sbjct: 401 YTGHERGFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYNE--ETIPMTIFWQV 458

Query: 329 PYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITK 388
           P   L G A  F  IGQ EF+Y + P +M S+ S LS   ++  N +++ ++  V  +T+
Sbjct: 459 PQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTR 518

Query: 389 RGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTA 440
            GG  GWI  N+N GH DY++WLL  LS  NFL YL   K Y  +K   G A
Sbjct: 519 SGGRPGWIAKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWY-TYKKTTGHA 569

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  260 bits (665), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 161/460 (35%), Positives = 239/460 (51%), Gaps = 46/460 (10%)

Query: 1   MVLLWSTTILPGAKPPACDQLRNG-CESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGA 59
           M LL  +  LP  KP AC  +    C  AT  Q    +    L++LG+GGI+    +FGA
Sbjct: 138 MALLTLSASLPVLKPAACAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGA 197

Query: 60  EQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLS 119
           +Q D  D  + +    S+F+W+Y  ++  S ++ T +V++Q+N+GW +GF +P V M +S
Sbjct: 198 DQFDDTD-PRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVS 256

Query: 120 ALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQ-----ATEEMYHHGKGSM 174
             SFF+ +P Y   K   S +  + QVLVA+++  +  LP        T E      GS 
Sbjct: 257 IASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSR 316

Query: 175 RLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIK---------- 224
           ++  ++  +FL+KA +    E   +  G  SNP  LCTV QVEE+K LI+          
Sbjct: 317 KIQHTDGYKFLDKAAVISEYE---SKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIV 373

Query: 225 ---------------ASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKI 269
                            SM+R +  +FEIP  SF +F  L + I I +YDR ++P   + 
Sbjct: 374 YSVLYSQISTLFVQQGRSMNR-IIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRF 432

Query: 270 KGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLP 329
            G P  L+   RMGIGL  S  S+ A AIVE  R  +A         +  V MS  WQ+P
Sbjct: 433 TGIPKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLA---------QDFVAMSIFWQIP 483

Query: 330 YLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKR 389
             +L G+A  F  IG+ EF+Y E P +M S+ S L+    +  + ++SLI+  V   T  
Sbjct: 484 QYILMGIAEVFFFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTAL 543

Query: 390 GGNGGWIPSNINKGHYDYYYWLLTALSMANF-LYYLACCK 428
           GG  GW+P ++NKGH DY++WLL +L + N  +Y L C K
Sbjct: 544 GGKDGWVPDDLNKGHLDYFFWLLVSLGLVNIPVYALICVK 583

Arabidopsis thaliana (taxid: 3702)

>sp|Q944G5|PTR44_ARATH Probable peptide/nitrate transporter At3g47960 OS=Arabidopsis thaliana GN=At3g47960 PE=1 SV=3

 Score =  258 bits (660), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 147/456 (32%), Positives = 247/456 (54%), Gaps = 35/456 (7%)

Query: 7   TTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGD 66
           T  +P   P AC   +  CE  +  Q++ L    G + +G+GGIR  +LAFGA+Q +   
Sbjct: 153 TAAIPSLHPVACGN-KISCEGPSVGQILFLLMGLGFLVVGAGGIRPCNLAFGADQFNPKS 211

Query: 67  GTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLA 126
            +  KG + S+F+WY+   + + I+++T +VYIQ N+ W +G  +P  +M L+ + FF  
Sbjct: 212 ESGKKG-INSFFNWYFFTFTFAQIISLTAVVYIQSNVSWTIGLIIPVALMFLACVIFFAG 270

Query: 127 SPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHH---GKGSMRLMPSENLR 183
              YVK KA+ S L G+ +V+ A+ K R  K   Q    +Y+H      +  L  ++  R
Sbjct: 271 DRLYVKVKASGSPLAGIARVIAAAIKKRGLKPVKQPWVNLYNHIPSNYANTTLKYTDQFR 330

Query: 184 FLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIK------ASSM--------- 228
           FL+KA +   PE+ L  DG AS+P  LCT++QVEE+K +++      AS++         
Sbjct: 331 FLDKAAIMT-PEEKLNSDGTASDPWKLCTLQQVEEVKCIVRVIPIWFASTIYYLAITIQM 389

Query: 229 ----------DRHV-TPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLS 277
                     DR + +  F IP+ ++ +F +  +T++I  YDR ++P   ++ G    +S
Sbjct: 390 TYPVFQALQSDRRLGSGGFRIPAATYVVFLMTGMTVFIIFYDRVLVPSLRRVTGLETGIS 449

Query: 278 LKLRMGIGLLFSTASMTAWAIVEAARRSIAINE---GISDDLRAVVQMSAMWQLPYLVLS 334
           L  R+G G  F+  S+     +E  RR+ A+ +   G++     +  MSA+W +P L L+
Sbjct: 450 LLQRIGAGFTFAIMSLLVSGFIEERRRNFALTKPTLGMAPRTGEISSMSALWLIPQLTLA 509

Query: 335 GLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGG 394
           G+A AF  IGQ EFYY + P++M S A ++   G   ++ +AS +++ V   T    +G 
Sbjct: 510 GIAEAFAAIGQMEFYYKQFPENMKSFAGSIFYVGAGVSSYLASFLISTVHRTTAHSPSGN 569

Query: 395 WIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 430
           W+  ++NK   DY+Y++LT L + N  Y+L   + Y
Sbjct: 570 WLAEDLNKAKLDYFYFMLTGLMVVNMAYFLLMARWY 605

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	451
224087732	605	predicted protein [Populus trichocarpa]	0.982	0.732	0.588	1e-153
255550992	578	nitrate transporter, putative [Ricinus c	0.986	0.769	0.585	1e-152
224106908	606	predicted protein [Populus trichocarpa]	0.991	0.737	0.577	1e-151
224141761	515	predicted protein [Populus trichocarpa]	0.957	0.838	0.588	1e-151
224141763	581	predicted protein [Populus trichocarpa]	0.997	0.774	0.567	1e-146
224141759	564	predicted protein [Populus trichocarpa]	0.955	0.764	0.559	1e-142
224141757	568	predicted protein [Populus trichocarpa]	0.960	0.762	0.567	1e-142
255549914	612	nitrate transporter, putative [Ricinus c	0.995	0.733	0.520	1e-141
224059108	479	predicted protein [Populus trichocarpa]	0.980	0.922	0.527	1e-141
356507909	568	PREDICTED: probable peptide transporter	0.960	0.762	0.542	1e-138

>gi|224087732|ref|XP_002335129.1| predicted protein [Populus trichocarpa] gi|222832886|gb|EEE71363.1| predicted protein [Populus trichocarpa]

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 276/469 (58%), Positives = 333/469 (71%), Gaps = 26/469 (5%)

Query: 1   MVLLWSTTILPGAKPPACDQLRNGCES-ATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGA 59
           MVLLW TTI+PGA+ P+C Q  + C + AT  QL+ LYF  GLMS+G+GGIRS SLAFGA
Sbjct: 118 MVLLWLTTIIPGARVPSCAQFSSNCTNDATTPQLLFLYFCLGLMSIGAGGIRSCSLAFGA 177

Query: 60  EQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLS 119
           +QL K D  K  G L+S+FSWYYV  SAS  +++TCIVYIQD +GWKVGFGVP V+M+LS
Sbjct: 178 DQLSKRDSLKHAGILESFFSWYYVTSSASVFISMTCIVYIQDTMGWKVGFGVPVVLMILS 237

Query: 120 ALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPS 179
            LSFFLASP YVK KA  S L G  +VLVASF+ RR +L +  T+E+YHH KGS  ++PS
Sbjct: 238 TLSFFLASPIYVKPKAKASWLIGFARVLVASFRKRRIELSSLDTDELYHHRKGSALVVPS 297

Query: 180 ENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIK--------------- 224
           E +RFLNKAC+ K+PE+DL PDGRAS+P SLCTV+QVEELKALIK               
Sbjct: 298 ERIRFLNKACVIKNPEEDLMPDGRASDPWSLCTVDQVEELKALIKVIPIWSTGVLVSVNV 357

Query: 225 ---------ASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQ 275
                    AS+M+RH+T  FEIP+GSF  F +L+ T+WI LYDR ++PLASKI GKP +
Sbjct: 358 CQNSFLLLQASTMNRHITSKFEIPAGSFYAFLLLSATMWIALYDRVIIPLASKITGKPTR 417

Query: 276 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSG 335
           L LK ++GIG+L S ASM   AI+E  RR IAI EGISD   AV  MSAMW LP+  L G
Sbjct: 418 LGLKQKIGIGILVSAASMAVLAIIERVRREIAIREGISDIPDAVTHMSAMWLLPFYFLLG 477

Query: 336 LAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGW 395
            + A N +G  EF+YTELPKSMSS+AS L   GLSAA+LVAS I++ V           W
Sbjct: 478 FSEAMNGVGLNEFFYTELPKSMSSVASNLFSIGLSAASLVASFIVSNVCGFIGEANQESW 537

Query: 396 IPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK-GRVGTAFDD 443
           + SNINKGHYDYYYWLL +L  ANF+YYLAC KAYGP K G+ G   DD
Sbjct: 538 VSSNINKGHYDYYYWLLYSLGFANFIYYLACSKAYGPCKGGQRGITGDD 586

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550992|ref|XP_002516544.1| nitrate transporter, putative [Ricinus communis] gi|223544364|gb|EEF45885.1| nitrate transporter, putative [Ricinus communis]

 Score =  546 bits (1406), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 276/471 (58%), Positives = 339/471 (71%), Gaps = 26/471 (5%)

Query: 1   MVLLWSTTILPGAKPPACDQL-RNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGA 59
           ++LLW T ++P A+P  CDQ   + C+S T  QL+ LY +FGL+S+G+GGIRSSSLAFGA
Sbjct: 107 IILLWLTAVIPQARPLPCDQFTSDSCQSPTTLQLLLLYSSFGLLSIGAGGIRSSSLAFGA 166

Query: 60  EQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLS 119
           +QL  G   K  G L+ + SWYYV VS S++VA+TCIVYIQD +GWKVGFGVP V+M ++
Sbjct: 167 DQLGMGQSLKRAGILERFISWYYVLVSVSAVVAMTCIVYIQDAMGWKVGFGVPVVLMAIA 226

Query: 120 ALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPS 179
            LSFF AS FYVKSK   S   G  QVL A++ NR     +Q + + YH+ KG+  + PS
Sbjct: 227 VLSFFSASSFYVKSKPTASSFTGFAQVLAAAYHNRSIPFSSQDSNDGYHNRKGATVVAPS 286

Query: 180 ENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIK--------------- 224
           E LRFLNKAC+ ++PE+DLTPDGRASNP SLCTV QVEELKALIK               
Sbjct: 287 EMLRFLNKACIIENPEEDLTPDGRASNPWSLCTVNQVEELKALIKIIPIWLSGMIMSVNV 346

Query: 225 ---------ASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQ 275
                    AS+MDRH+   FEIP+GS N+F +++L IW+ LYDR ++PLASK++GKP +
Sbjct: 347 AQSSFPVLQASTMDRHIISKFEIPAGSMNVFMVISLAIWVSLYDRVIVPLASKLRGKPVR 406

Query: 276 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSG 335
           LSLK RMGIG+L S+ASM A+AI E  RR  AI EG SDD  AVV MS +W LPYLVL G
Sbjct: 407 LSLKQRMGIGILLSSASMLAFAIAEKNRRERAIREGFSDDPNAVVNMSVLWLLPYLVLCG 466

Query: 336 LAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGW 395
           LA  F+ IGQ EFYYTELPKSMSSIA+TL   GLSAANL+AS IM+ +D  +KRGG   W
Sbjct: 467 LAETFSAIGQNEFYYTELPKSMSSIAATLFDMGLSAANLLASFIMSTIDSFSKRGGEESW 526

Query: 396 IPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDG 446
           + SNINKGHYDYYYWLL +LS+ NF+YYLAC K YGP + + G A DD DG
Sbjct: 527 VSSNINKGHYDYYYWLLASLSLLNFVYYLACSKGYGPCRAKEGNAPDD-DG 576

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106908|ref|XP_002333609.1| predicted protein [Populus trichocarpa] gi|222837572|gb|EEE75937.1| predicted protein [Populus trichocarpa]

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 273/473 (57%), Positives = 334/473 (70%), Gaps = 26/473 (5%)

Query: 1   MVLLWSTTILPGAKPPACDQLRNGCES-ATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGA 59
           MVLLW TTI+PGA  P+C Q  + C + AT  QL+ LYF  GLMS+G+GGIRS SLAFGA
Sbjct: 118 MVLLWLTTIIPGATVPSCAQFSSICNNDATTPQLLFLYFCLGLMSIGAGGIRSCSLAFGA 177

Query: 60  EQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLS 119
           +QL K D  K  G L+S+FSWYYV  SAS  +++TCIVYIQD +GWKVGFGVP V+M+LS
Sbjct: 178 DQLSKRDSLKHAGILESFFSWYYVTSSASVFISMTCIVYIQDTMGWKVGFGVPVVLMILS 237

Query: 120 ALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPS 179
            LSFFLASP YVK K   S L G  +VLVAS++ RR +L    T+E+YHH KGS  ++PS
Sbjct: 238 TLSFFLASPIYVKPKVKASWLIGFARVLVASYRKRRIELSWLDTDELYHHRKGSALVVPS 297

Query: 180 ENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIK--------------- 224
           E +RFLNKAC+ K+PE+DL PDGRAS+P +LCTV+QVEELKALIK               
Sbjct: 298 ERIRFLNKACVIKNPEEDLMPDGRASDPWTLCTVDQVEELKALIKVIPIWSTGVLVSVNV 357

Query: 225 ---------ASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQ 275
                    AS+M+RH+T  FEIP+GSF  F +L+ T+WI LYDR ++PLASKI GKP +
Sbjct: 358 CQNSFLLLQASTMNRHITSKFEIPAGSFYAFLLLSATMWIALYDRVIIPLASKITGKPTR 417

Query: 276 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSG 335
           L LK ++GIG+L S ASM   AI+E  RR IAI EGISD   AV  MSAMW LP+  L G
Sbjct: 418 LGLKQKIGIGILVSAASMAVLAIIERVRREIAIREGISDIPDAVTHMSAMWLLPFYFLLG 477

Query: 336 LAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGW 395
            + A N +G  EF+YTELPKSMSS+AS L   GLSAA+LVAS I++ V           W
Sbjct: 478 FSEAMNGVGLNEFFYTELPKSMSSVASNLFSIGLSAASLVASFIVSNVRGFIGEANQESW 537

Query: 396 IPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK-GRVGTAFDDKDGM 447
           + SNINKGHYDYYYWLL++L  ANF+YYLAC KAYGP K G+ G   D ++G+
Sbjct: 538 VSSNINKGHYDYYYWLLSSLGFANFIYYLACSKAYGPCKGGQRGITGDVREGL 590

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141761|ref|XP_002324233.1| predicted protein [Populus trichocarpa] gi|222865667|gb|EEF02798.1| predicted protein [Populus trichocarpa]

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 269/457 (58%), Positives = 327/457 (71%), Gaps = 25/457 (5%)

Query: 1   MVLLWSTTILPGAKPPACDQLRNGCES-ATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGA 59
           MVLLW TTI+PGA  P+C Q  + C + AT  QL+ LYF  GLMS+G+GGIRS SLAFGA
Sbjct: 59  MVLLWLTTIIPGATVPSCAQFSSICNNDATTPQLLFLYFCLGLMSIGAGGIRSCSLAFGA 118

Query: 60  EQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLS 119
           +QL K D  K  G L+S+FSWYYV  SAS  +++TC+VYIQ+ +GWKVGFGVP V+M+LS
Sbjct: 119 DQLSKRDSLKHAGILESFFSWYYVISSASVFISMTCVVYIQEAMGWKVGFGVPVVLMILS 178

Query: 120 ALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPS 179
            LSFFLASP YVK KA  S L G  +VLVASF+ RR +L +  T+E+YHH KGS  ++PS
Sbjct: 179 TLSFFLASPIYVKPKAKASWLIGFARVLVASFRKRRIELSSLDTDELYHHRKGSALVVPS 238

Query: 180 ENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIK--------------- 224
           E +RFLNKAC+ K+PE+DL PDGRAS+P SLCTV+QVEELKALIK               
Sbjct: 239 ERIRFLNKACVIKNPEEDLMPDGRASDPWSLCTVDQVEELKALIKVIPIWSTGVLVSVNV 298

Query: 225 ---------ASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQ 275
                    AS+M+RH+T  FEIP+GSF  F +L+ T+WI LYDR ++PLASKI GKP +
Sbjct: 299 CQNSFLLLQASTMNRHITSKFEIPAGSFYAFLLLSATMWIALYDRVIIPLASKITGKPTR 358

Query: 276 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSG 335
           L LK ++GIG+L S ASM   AI+E  RR IAI EGISD   AV  MSAMW LP+  L G
Sbjct: 359 LGLKQKIGIGILVSAASMAVLAIIERVRREIAIREGISDIPDAVTHMSAMWLLPFYFLLG 418

Query: 336 LAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGW 395
            + A N +G  EF+YTELPKSMSS+AS L   GLSAA+LVAS I++ V           W
Sbjct: 419 FSEAMNGVGLNEFFYTELPKSMSSVASNLFSIGLSAASLVASFIVSNVRGFIGEANQESW 478

Query: 396 IPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGP 432
           + SNINKGHYDYYYWLL++L  ANF+YYLAC KAYGP
Sbjct: 479 VSSNINKGHYDYYYWLLSSLGFANFIYYLACSKAYGP 515

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141763|ref|XP_002324234.1| predicted protein [Populus trichocarpa] gi|222865668|gb|EEF02799.1| predicted protein [Populus trichocarpa]

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 269/474 (56%), Positives = 341/474 (71%), Gaps = 24/474 (5%)

Query: 1   MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAE 60
           ++LLW TTI+PG +PP C Q  + CESA+  QL+ LY + GLM++G+GGIRSSSLAFGAE
Sbjct: 107 VILLWLTTIIPGTRPPPCVQFHDSCESASTLQLLLLYSSLGLMAIGAGGIRSSSLAFGAE 166

Query: 61  QLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSA 120
           QL K D  K  G L+S+F WYY  VS +  +A+TCI+YIQDN+GWKVGFG+P V+M+LS 
Sbjct: 167 QLGKRDTLKRAGILESFFRWYYATVSVALFLAMTCILYIQDNMGWKVGFGIPVVLMILST 226

Query: 121 LSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSE 180
           LSFFLASP YVKSKA    L G  +VLVASF+NR  KL +Q T+++YHH KGS  L+PSE
Sbjct: 227 LSFFLASPIYVKSKAKAGWLDGFARVLVASFRNRSIKLSSQVTDDVYHHRKGSRLLVPSE 286

Query: 181 NLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIK---------------- 224
            LRFLNKAC+ ++P++DL PDGRASNP SLCTV++VEELK+LIK                
Sbjct: 287 KLRFLNKACVIRNPKEDLIPDGRASNPWSLCTVDEVEELKSLIKVIPIWSTGVLMSINVL 346

Query: 225 --------ASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQL 276
                   AS+MDRH+T  F++P+GSF  F + +  IWI LYDR  +PLASKI+GKP +L
Sbjct: 347 QHSFIVLQASTMDRHITSKFQVPAGSFTAFQLFSSVIWIALYDRVAIPLASKIRGKPTRL 406

Query: 277 SLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGL 336
            LK R+GIG+L S+A+M A AI+E+ RR  AI EG SDD  +V+ +SA+W L Y  ++G 
Sbjct: 407 GLKQRIGIGILSSSAAMAALAIIESVRRKTAIKEGFSDDPNSVLHISALWLLLYFFITGF 466

Query: 337 AMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWI 396
           A AF  IGQ EF+YTELPKSMSS+AS L   GLS +NL+ASL++  V +  K      W+
Sbjct: 467 AEAFCGIGQNEFFYTELPKSMSSVASNLFEMGLSVSNLIASLLVTIVRNFFKGNDQESWL 526

Query: 397 PSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDGMEEE 450
            SNINKGHYDYYYWLL  LS+ANF+YY AC KAYGP KG+ G A D  + + +E
Sbjct: 527 SSNINKGHYDYYYWLLAGLSLANFIYYRACSKAYGPCKGQEGNATDGGEALTDE 580

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141759|ref|XP_002324232.1| predicted protein [Populus trichocarpa] gi|222865666|gb|EEF02797.1| predicted protein [Populus trichocarpa]

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 255/456 (55%), Positives = 318/456 (69%), Gaps = 25/456 (5%)

Query: 1   MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAE 60
           MVLLW TT  P A+ P C    + C S +  QL+ LY AFG M++G+GGIRSSSLAFGA+
Sbjct: 96  MVLLWLTT-FPEARQPLCVHFSHSCNSRSTLQLVHLYTAFGFMAIGAGGIRSSSLAFGAD 154

Query: 61  QLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSA 120
           QL      +     +S+F WYYV V+AS  VA+TC+VYIQ+N+GW VGFGVP V+M+LSA
Sbjct: 155 QLSITHNLQRARIRESFFRWYYVTVTASVFVAMTCVVYIQENMGWMVGFGVPVVLMILSA 214

Query: 121 LSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSE 180
           LSF LASPFYVKSK   S + GL QV+VASF+NR  +L TQAT E+ +H  GS+  +PS+
Sbjct: 215 LSFSLASPFYVKSKPKASWITGLAQVVVASFRNRSVELSTQATVEVRYHTTGSILPVPSK 274

Query: 181 NLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKA--------------- 225
            LRF NKAC+  +P+ D+TPDG A +P SLCTV+QVE+LK LIK                
Sbjct: 275 RLRFFNKACIVGNPQVDVTPDGNALDPWSLCTVDQVEDLKTLIKVIPIWSSGMLMFVNVS 334

Query: 226 ---------SSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQL 276
                    S+MDRH+T  FEIP+ +F  FA+L + +W+ LYDR ++PL SKIKG+P  L
Sbjct: 335 QGSFIVLQVSTMDRHITSKFEIPAATFLSFAVLVIVLWVALYDRIIIPLVSKIKGQPVCL 394

Query: 277 SLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGL 336
            LK RMGIG+L ST SM A AI E+ RR  AI EG SD   A + +S    LP+L LSG+
Sbjct: 395 GLKKRMGIGILLSTTSMAALAIAESVRRETAIKEGFSDRPDAGLHISTFLFLPFLALSGV 454

Query: 337 AMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWI 396
           A AF  IGQ EF+YTELPKSMSS+ASTL+G G+S A+LV+S I+ AV D+T   G   W+
Sbjct: 455 AEAFTPIGQNEFFYTELPKSMSSVASTLNGIGMSVASLVSSFIVRAVRDLTTVEGQESWV 514

Query: 397 PSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGP 432
            SNINKGHYDYYYWLL +LS+ NFLYYLAC K+YGP
Sbjct: 515 SSNINKGHYDYYYWLLASLSLVNFLYYLACSKSYGP 550

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141757|ref|XP_002324231.1| predicted protein [Populus trichocarpa] gi|222865665|gb|EEF02796.1| predicted protein [Populus trichocarpa]

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 260/458 (56%), Positives = 328/458 (71%), Gaps = 25/458 (5%)

Query: 1   MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAE 60
           MVLLW TT  P A+PP C Q    C+SAT  QL+ LY AF  +++G+GGIRSSSLAFGA+
Sbjct: 105 MVLLWLTT-FPEARPPPCVQFSYDCKSATTLQLLLLYTAFCFLAIGAGGIRSSSLAFGAD 163

Query: 61  QLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSA 120
           QL   +  +     +S+FSWYY  V+AS  + +T +VYIQDN+GW VGFGVP V+M+LS+
Sbjct: 164 QLGTSNSLEHARIRESFFSWYYGIVAASVFLGMTFVVYIQDNIGWMVGFGVPVVLMILSS 223

Query: 121 LSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSE 180
           LSFF+ASP YVKSK   S + GL QV+V S +NRR KL +QAT+++ +H  GSM L+PSE
Sbjct: 224 LSFFVASPSYVKSKPKASWITGLAQVVVGSIRNRRIKLSSQATDKVDYHTTGSMLLVPSE 283

Query: 181 NLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIK---------------- 224
            LRFLNKAC+ ++P++DLTPDG+AS+P SLCTV+QVE+LKALIK                
Sbjct: 284 KLRFLNKACIIRNPQEDLTPDGKASDPWSLCTVDQVEDLKALIKVIPIWSAGMLKSVNVS 343

Query: 225 --------ASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQL 276
                   AS+M+RH+T  FE+P+ SF    +L +T W+ LYDR ++PL SK+ GK   L
Sbjct: 344 QGSFLVLQASTMNRHITSKFEVPAASFPSIVVLVITTWVVLYDRIIIPLVSKVSGKIVCL 403

Query: 277 SLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGL 336
           +LK RMGIG+L ST SM A AI E+ RR+ AI EG  D+  A + +SAMW LPY VLSGL
Sbjct: 404 NLKQRMGIGILLSTISMAALAIAESFRRATAIKEGFPDNPNAELHISAMWLLPYFVLSGL 463

Query: 337 AMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWI 396
           A AFN IGQ EF+YTELPKSMSS+ASTL G GLSAA+LV+S I++AV D TK      W+
Sbjct: 464 AEAFNAIGQNEFFYTELPKSMSSVASTLQGLGLSAASLVSSFIVSAVRDFTKGEAQESWV 523

Query: 397 PSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK 434
            SNINKGHYDYYYW+LT LS+ NF+YYL C K YGP +
Sbjct: 524 SSNINKGHYDYYYWILTILSLVNFIYYLVCSKTYGPCR 561

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549914|ref|XP_002516008.1| nitrate transporter, putative [Ricinus communis] gi|223544913|gb|EEF46428.1| nitrate transporter, putative [Ricinus communis]

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 246/473 (52%), Positives = 321/473 (67%), Gaps = 24/473 (5%)

Query: 2   VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQ 61
           VLLW TT++P +KPP CD +   C+S T  Q+  L  +   +S+G+GGIR  SLAFGA+Q
Sbjct: 115 VLLWLTTMIPQSKPPLCDLMTQNCKSPTAGQITMLLSSMAFISIGAGGIRPCSLAFGADQ 174

Query: 62  LDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSAL 121
           LD     K++  L+SYF WYY   + S ++A+T IVYIQD+ GW+VGFGVPA+++ LSA 
Sbjct: 175 LDNKSNPKNERILESYFGWYYASTAISVLIALTGIVYIQDHHGWRVGFGVPAILVFLSAF 234

Query: 122 SFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSEN 181
            FF+ASP Y+K KA+ SLL G  QVLV ++KNR+   P   ++  YH  K S  + P+EN
Sbjct: 235 LFFIASPLYLKQKASKSLLAGFAQVLVVAYKNRKIPFPPTNSDSKYHRRKNSEYITPTEN 294

Query: 182 LRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIK----------------- 224
           +RFLNKAC+ ++ EQDL PDG ASNP SLCT+EQVEELKALI+                 
Sbjct: 295 IRFLNKACIIRNAEQDLAPDGSASNPWSLCTIEQVEELKALIRVIPIWSTGIMMSINVSQ 354

Query: 225 -------ASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLS 277
                  ASSMDRH++  F++P+GSF  F ++++ IWI LYDRA+LPLA+KIKGKP +L 
Sbjct: 355 GSFQVLQASSMDRHLSSKFQVPAGSFATFVVISMAIWIVLYDRAILPLATKIKGKPVRLG 414

Query: 278 LKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLA 337
           +KLRMGIGL  S   M    IVE  RR  AI+EG  ++  AVVQMSA W  P   L+G A
Sbjct: 415 VKLRMGIGLFLSCMGMVVAGIVENVRRRKAIHEGYLNNPNAVVQMSAFWLAPQYCLNGFA 474

Query: 338 MAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIP 397
            A N IGQTEFYYTE PKSMSSIA  L G G++ ANL+A++I++ V++IT +GG  GW+P
Sbjct: 475 EALNAIGQTEFYYTEFPKSMSSIAGALFGLGMAVANLLATVILSLVNNITSKGGKVGWVP 534

Query: 398 SNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDGMEEE 450
           SNIN+GHYD YYWLL  +S  N LY+L C   YGP K ++    D+ +G + E
Sbjct: 535 SNINQGHYDNYYWLLAIMSAVNLLYFLICSWGYGPCKEQITKVSDEGNGFKHE 587

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059108|ref|XP_002299719.1| predicted protein [Populus trichocarpa] gi|222846977|gb|EEE84524.1| predicted protein [Populus trichocarpa]

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 246/466 (52%), Positives = 318/466 (68%), Gaps = 24/466 (5%)

Query: 9   ILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGT 68
           ++P  +PP CD     C++ T  Q+  L  +F LMS+G+GG+R  S+AFGA+QLD     
Sbjct: 1   MVPKVRPPPCDITTQSCKTPTTGQMTLLLSSFALMSIGAGGVRPCSIAFGADQLDNKSNP 60

Query: 69  KSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASP 128
           K++  L+S+F WYY   + S ++++T IVYIQD+LGWKVGFGVPA++M LSAL FF ASP
Sbjct: 61  KNERVLESFFGWYYASAAISVLISLTAIVYIQDHLGWKVGFGVPAILMFLSALLFFFASP 120

Query: 129 FYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKA 188
           FYVK K + SL  G  QV V ++KNR+   P + ++  YHH + S  + P+  LRFLNKA
Sbjct: 121 FYVKQKPSKSLFTGFIQVPVVAYKNRKLAFPPRDSDGWYHHKRDSKFIAPTTKLRFLNKA 180

Query: 189 CMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIK------------------------ 224
           C+ ++PEQD+  DG ASNP SLCT+EQVEELKAL+K                        
Sbjct: 181 CIIRNPEQDIASDGSASNPWSLCTIEQVEELKALLKVIPLWSTGIMISINISQSTFQLLQ 240

Query: 225 ASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGI 284
           ASSMDRH++ +F+IP+GSF +F I++L  W+ LYDRA+LPLASKIKGKP QL  KLRMGI
Sbjct: 241 ASSMDRHISSSFQIPAGSFGMFTIISLATWVILYDRAILPLASKIKGKPVQLGAKLRMGI 300

Query: 285 GLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIG 344
           GL  S  +M   AIVE+ RR  AI EG  ++  AV+ MSAMW +P   L+GLA AFN IG
Sbjct: 301 GLFLSCMAMVVSAIVESIRRRKAIREGYLNNAHAVLDMSAMWLVPQYCLNGLAEAFNAIG 360

Query: 345 QTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGH 404
           QTEFYY+E PKSMSSIA+ L G G++ ANL+AS I++AVD +T RGG   W+ +NINKGH
Sbjct: 361 QTEFYYSEFPKSMSSIAAALFGLGMAVANLLASAILSAVDKLTSRGGKESWVSNNINKGH 420

Query: 405 YDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDGMEEE 450
           YD YYWLL  +S  N LY+L C  AYGP   RV    D+ +G +EE
Sbjct: 421 YDNYYWLLAIMSSVNLLYFLVCSWAYGPCVERVIKVSDEGNGFKEE 466

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507909|ref|XP_003522705.1| PREDICTED: probable peptide transporter At1g52190-like [Glycine max]

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 250/461 (54%), Positives = 323/461 (70%), Gaps = 28/461 (6%)

Query: 1   MVLLWSTTILPGAKPPACDQLRNGCE-SATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGA 59
           MVLLW TT++P +KP  C+Q  N C  S T   L+ L+ +F LMS+G+GGIRSSSLAFG 
Sbjct: 109 MVLLWLTTLIPLSKP-LCNQFTNSCNNSPTTIHLLILHSSFALMSIGAGGIRSSSLAFGV 167

Query: 60  EQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLS 119
           +QL K D  K+ G  +SYFSWYY  V+ SS++ +T +VYIQDN+GW VGFG+P ++M ++
Sbjct: 168 DQLSKRD--KNAGIKESYFSWYYAIVAMSSLIGLTVVVYIQDNMGWAVGFGIPVILMFVA 225

Query: 120 ALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPS 179
             SFFLASPFYV  +   ++L GL QVLVAS+KNR  +LP +    +YH  K S  LMP+
Sbjct: 226 TASFFLASPFYVMVEVKRNMLSGLAQVLVASYKNRLLQLPQETENGIYHLEKDSDLLMPT 285

Query: 180 ENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIK--------------- 224
           E LRFLNKAC+ ++  QDLTP+GRA NP +LCTV+QVEELKALIK               
Sbjct: 286 EKLRFLNKACLIRNSLQDLTPEGRALNPWNLCTVDQVEELKALIKIVPIWSTGIMMGVNI 345

Query: 225 ---------ASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQ 275
                    ASSMDRH+T NFEIPSGSF  F I++L +W+ +YDR ++P+ASKIKG P  
Sbjct: 346 SQGSLLVLEASSMDRHITSNFEIPSGSFVTFMIVSLVLWVIIYDRILVPVASKIKGSPAC 405

Query: 276 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSG 335
           +  K +MGIGLL    ++ + A+VE  RR IAI +G  D  +AVV MSA+W LP  +L+G
Sbjct: 406 IGAKQKMGIGLLTGCIAIASLAVVEDIRRKIAIEKGYEDQPQAVVNMSALWLLPRQILNG 465

Query: 336 LAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGW 395
           LA A  ++GQ EF+ TELP+SMSS+ASTL+G G S ANLVAS I++ VD++T  GG+  W
Sbjct: 466 LAEALGVVGQNEFFLTELPQSMSSLASTLNGLGSSVANLVASFILSVVDNVTGGGGHESW 525

Query: 396 IPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGR 436
           + SNINKGHYDYYY L+ AL   NF+Y+L C K+YGP K R
Sbjct: 526 LSSNINKGHYDYYYTLICALCFVNFVYFLYCSKSYGPCKNR 566

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	451
TAIR|locus:2037452	607	AT1G52190 [Arabidopsis thalian	0.503	0.373	0.456	3.6e-103
TAIR|locus:2093442	591	AT3G16180 [Arabidopsis thalian	0.501	0.382	0.471	9.6e-101
TAIR|locus:2144281	481	AT5G11570 [Arabidopsis thalian	0.465	0.436	0.392	1.4e-62
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.478	0.378	0.347	7.3e-62
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.478	0.378	0.337	6.8e-58
TAIR|locus:2026884	596	AT1G68570 [Arabidopsis thalian	0.509	0.385	0.316	1.9e-57
TAIR|locus:2172249	616	GTR2 "AT5G62680" [Arabidopsis	0.472	0.345	0.302	2.4e-56
TAIR|locus:2035005	587	NRT1.9 "nitrate transporter 1.	0.501	0.385	0.327	4.2e-56
TAIR|locus:2196800	620	NRT1.7 "nitrate transporter 1.	0.474	0.345	0.322	1.8e-55
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.432	0.333	0.352	5.6e-55

TAIR|locus:2037452 AT1G52190 [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 3.6e-103, Sum P(2) = 3.6e-103
 Identities = 106/232 (45%), Positives = 151/232 (65%)

Query:   222 LIKASSMDRHVT---PNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSL 278
             L++A+SMDR ++    +F++P+GSF +F I+ L +W+ LYDRAV+PLASKI+G+P +LS+
Sbjct:   355 LLQATSMDRRLSRHGSSFQVPAGSFGMFTIIALALWVILYDRAVIPLASKIRGRPFRLSV 414

Query:   279 KLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAM 338
             KLRMG+GL  S  +M   A+VE+ RR  AI++G +++  AVV +SAMW +P  VL GLA 
Sbjct:   415 KLRMGLGLFMSFLAMAISAMVESFRRKKAISQGYANNSNAVVDISAMWLVPQYVLHGLAE 474

Query:   339 AFNMIGQTEFYYTELPKSMXXXXXXXXXXXXXXXXXXXXXIMNAVDDITKRGGNGGWIPS 398
             A   IGQTEF+YTE PKSM                     ++NAV+++T R G   W+  
Sbjct:   475 ALTAIGQTEFFYTEFPKSMSSIAASLFGLGMAVASLLASVVLNAVNELTSRNGKESWVSD 534

Query:   399 NINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDGMEEE 450
             NINKGHY+YYYW+L  +S  N +YY+ C  +YGP   +V       +G+ EE
Sbjct:   535 NINKGHYNYYYWVLAIMSFINVIYYVICSWSYGPLVDQVRNG--RVNGVREE 584

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2093442 AT3G16180 [Arabidopsis thaliana (taxid:3702)]

 Score = 552 (199.4 bits), Expect = 9.6e-101, Sum P(2) = 9.6e-101
 Identities = 109/231 (47%), Positives = 148/231 (64%)

Query:   222 LIKASSMDRHVTPN--FEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLK 279
             L++A SMDR ++ N  F+IP+GSF +F I+ L  W+ LYDRA+LPLASKI+G+P ++++K
Sbjct:   356 LLQAKSMDRRLSSNSTFQIPAGSFGMFTIIALISWVVLYDRAILPLASKIRGRPVRVNVK 415

Query:   280 LRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMA 339
             +RMG+GL  S  +M   A VE  RR  AI++G+++D  + V +SAMW +P  VL GLA A
Sbjct:   416 IRMGLGLFISFLAMAVSATVEHYRRKTAISQGLANDANSTVSISAMWLVPQYVLHGLAEA 475

Query:   340 FNMIGQTEFYYTELPKSMXXXXXXXXXXXXXXXXXXXXXIMNAVDDITKRGGNGGWIPSN 399
                IGQTEF+YTE PKSM                     I+NAV + +K+G N  WI  N
Sbjct:   476 LTGIGQTEFFYTEFPKSMSSIAASLFGLGMAVANILASVILNAVKNSSKQG-NVSWIEDN 534

Query:   400 INKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDGMEEE 450
             INKGHYDYYYW+L  LS  N +YY+ C  +YGP   +V    D  +GM +E
Sbjct:   535 INKGHYDYYYWVLAILSFVNVIYYVVCSWSYGPTVDQVRN--DKVNGMRKE 583

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2144281 AT5G11570 [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 1.4e-62, Sum P(3) = 1.4e-62
 Identities = 88/224 (39%), Positives = 126/224 (56%)

Query:   209 SLCTVEQVEELKALIKASSMDRHV-TPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLAS 267
             SL T  QV  +  +++A +MDRH     FEIP GS+ IF +++  +++GLYD  ++PL S
Sbjct:   267 SLVTACQVSFI--VLQAKTMDRHTFIQGFEIPPGSYGIFLVISFLLFLGLYDLVIVPLLS 324

Query:   268 KIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQ 327
                 +P +L + +RM  G + S   ++A A  E ARR  A +E       +  ++SAMW 
Sbjct:   325 WALREPFRLGVMVRMWAGYVISVLCISALAATEYARRKTARDE-------SGTKLSAMWL 377

Query:   328 LPYLVLSGLAMAFNMIGQTEFYYTELPKSMXXXXXXXXXXXXXXXXXXXXXIMNAVDDIT 387
             LPY++L G+A A N I Q EF+Y+ELPK+M                     I+  VD  T
Sbjct:   378 LPYMILGGIAEALNTIAQNEFFYSELPKTMSSVATTLSSLNMAAASLISSWIITIVDVTT 437

Query:   388 KRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYG 431
                  G WI  NI++GH DYYYWLL  LS+ N LY++ C K+YG
Sbjct:   438 Y----GSWITENIDEGHLDYYYWLLVGLSLLNVLYFVWCKKSYG 477

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 7.3e-62, Sum P(2) = 7.3e-62
 Identities = 76/219 (34%), Positives = 113/219 (51%)

Query:   222 LIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLR 281
             +++ ++MD+H+  NFEIPS S ++F  +++  W  +YD+ ++PLA K        +   R
Sbjct:   354 VLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQR 413

Query:   282 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFN 341
             MGIGL+ S  +M    ++E  R          D  +  + MS  WQ+P  +L G A  F 
Sbjct:   414 MGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQ--IHMSIFWQIPQYLLIGCAEVFT 471

Query:   342 MIGQTEFYYTELPKSMXXXXXXXXXXXXXXXXXXXXXIMNAVDDITKRGGNGGWIPSNIN 401
              IGQ EF+Y + P +M                     ++  V  ITK+ G  GWIP N+N
Sbjct:   472 FIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLN 531

Query:   402 KGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTA 440
             +GH DY+++LL  LS  NFL YL   K Y  +K  VG A
Sbjct:   532 RGHLDYFFYLLATLSFLNFLVYLWISKRY-KYKKAVGRA 569

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 6.8e-58, Sum P(2) = 6.8e-58
 Identities = 74/219 (33%), Positives = 114/219 (52%)

Query:   222 LIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLR 281
             +++ +++D+H+ PNF+IPS S ++F  L++  W  +YD+ ++P A K  G     +   R
Sbjct:   354 VLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQR 413

Query:   282 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFN 341
             +GIGL+ S  SM +  I+E AR +      + ++    + M+  WQ+P   L G A  F 
Sbjct:   414 IGIGLVISIFSMVSAGILEVARLNYVQTHNLYNE--ETIPMTIFWQVPQYFLVGCAEVFT 471

Query:   342 MIGQTEFYYTELPKSMXXXXXXXXXXXXXXXXXXXXXIMNAVDDITKRGGNGGWIPSNIN 401
              IGQ EF+Y + P +M                     ++  V  +T+ GG  GWI  N+N
Sbjct:   472 FIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLN 531

Query:   402 KGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTA 440
              GH DY++WLL  LS  NFL YL   K Y  +K   G A
Sbjct:   532 NGHLDYFFWLLAGLSFLNFLVYLWIAKWY-TYKKTTGHA 569

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 1.9e-57, Sum P(2) = 1.9e-57
 Identities = 73/231 (31%), Positives = 119/231 (51%)

Query:   221 ALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKL 280
             +L +A +M+RH+T +F+IP+GS ++F  + +   I  YDR  + +A K  G    ++   
Sbjct:   355 SLQQAKTMNRHLTNSFQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLH 414

Query:   281 RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAF 340
             RMGIG + S  +      VE  R+S+AI  G+ D    +V +S +W +P   L G+A AF
Sbjct:   415 RMGIGFVISIIATLVAGFVEVKRKSVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAF 474

Query:   341 NMIGQTEFYYTELPKSMXXXXXXXXXXXXXXXXXXXXXIMNAVDDITKRGGNGGWIP-SN 399
               IG  EF+Y + P+SM                     ++  V   + +     W+P +N
Sbjct:   475 MSIGHLEFFYDQAPESMRSTATALFWMAISIGNYVSTLLVTLVHKFSAKPDGSNWLPDNN 534

Query:   400 INKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDDKDGMEEE 450
             +N+G  +Y+YWL+T L   N +YYL C K Y     +V  + +D   ++EE
Sbjct:   535 LNRGRLEYFYWLITVLQAVNLVYYLWCAKIYTYKPVQVHHSKEDSSPVKEE 585

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2172249 GTR2 "AT5G62680" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.4e-56, Sum P(2) = 2.4e-56
 Identities = 66/218 (30%), Positives = 114/218 (52%)

Query:   222 LIKASSMDRHV-TPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKL 280
             + +A   DR + +  F IP+ ++ +F +  +T++I +YDR ++P   +I G    ++L  
Sbjct:   377 VFQALQSDRRLGSGGFVIPAATYVVFLMTGMTVFIVVYDRVLVPTMRRITGLDTGITLLQ 436

Query:   281 RMGIGLLFSTASMTAWAIVEAARRSIAINE---GISDDLRAVVQMSAMWQLPYLVLSGLA 337
             R+G G+ F+TAS+     VE  RR+ A+ +   G++     +  MSAMW +P L L+G+A
Sbjct:   437 RIGTGIFFATASLVVAGFVEERRRTFALTKPTLGMAPRKGEISSMSAMWLIPQLSLAGVA 496

Query:   338 MAFNMIGQTEFYYTELPKSMXXXXXXXXXXXXXXXXXXXXXIMNAVDDITKRGGNGGWIP 397
              AF  IGQ EFYY + P++M                     ++  V   T+    G W+ 
Sbjct:   497 EAFAAIGQMEFYYKQFPENMRSFAGSIFYVGGGVSSYLGSFLIATVHRTTQNSSGGNWLA 556

Query:   398 SNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKG 435
              ++NKG  D +Y+++  +   NF Y+L   + Y  +KG
Sbjct:   557 EDLNKGRLDLFYFMIAGILAVNFAYFLVMSRWYR-YKG 593

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0080167 "response to karrikin" evidence=IEP

GO:0009506 "plasmodesma" evidence=IDA

GO:0090448 "glucosinolate:hydrogen symporter activity" evidence=IDA

GO:0090449 "phloem glucosinolate loading" evidence=IMP

GO:1901349 "glucosinolate transport" evidence=IDA

TAIR|locus:2035005 NRT1.9 "nitrate transporter 1.9" [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 4.2e-56, Sum P(2) = 4.2e-56
 Identities = 76/232 (32%), Positives = 121/232 (52%)

Query:   222 LIKASSMDRHVTP-NFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKL 280
             + ++   DR + P +F+IP+GS+ +F +L +TI+I +YDR ++P   K  G+   ++   
Sbjct:   351 IFQSLQSDRRLGPGSFQIPAGSYTVFLMLGMTIFIPIYDRVLVPFLRKYTGRDGGITQLQ 410

Query:   281 RMGIGLLFSTASMTAWAIVEAARRSIAINE---GISDDLRAVVQMSAMWQLPYLVLSGLA 337
             R+G GL     SM   AIVE  RR +A+ +   G++    A+  MS MW +P LVL G+A
Sbjct:   411 RVGAGLFLCITSMMVSAIVEQYRRKVALTKPTLGLAPRKGAISSMSGMWLIPQLVLMGIA 470

Query:   338 MAFNMIGQTEFYYTELPKSMXXXXXXXXXXXXXXXXXXXXXIMNAVDDITKRGGNGGWIP 397
              A   +GQ EFYY + P++M                     +++AV D T+    G W+P
Sbjct:   471 DALAGVGQMEFYYKQFPENMRSFAGSLYYCGIGLASYLSTFLLSAVHDTTEGFSGGSWLP 530

Query:   398 SNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFD-DKDGME 448
              ++NKG  +Y+Y+L+  +   N  Y+L     Y  +K  V    D DK   E
Sbjct:   531 EDLNKGRLEYFYFLVAGMMTLNLAYFLLVSHWYR-YKDVVAKDKDMDKTSAE 581

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0010233 "phloem transport" evidence=IMP

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0090408 "phloem nitrate loading" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2196800 NRT1.7 "nitrate transporter 1.7" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 1.8e-55, Sum P(2) = 1.8e-55
 Identities = 71/220 (32%), Positives = 113/220 (51%)

Query:   224 KASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMG 283
             +A  MDR++ P FEIP+GS ++ ++LT+ I++  YDR  +P   +I G    ++L  R+G
Sbjct:   388 QALKMDRNLGPKFEIPAGSLSVISLLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRIG 447

Query:   284 IGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMI 343
              G++F+  SM    IVE  RR  +IN G   D   +  MS  W  P L+L GL  AFN+I
Sbjct:   448 TGIVFAIFSMIVAGIVERMRRIRSINAG---DPTGMTPMSVFWLSPQLILMGLCEAFNII 504

Query:   344 GQTEFYYTELPKSMXXXXXXXXXXXXXXXXXXXXXIMNAVDDITKRGGNGGWIPSNINKG 403
             GQ EF+ ++ P+ M                     ++  V   +       W+  N+N G
Sbjct:   505 GQIEFFNSQFPEHMRSIANSLFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDWLNKNLNAG 564

Query:   404 HYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTAFDD 443
               DY+Y+L+  L + N +Y+  C + Y   + +VG   +D
Sbjct:   565 KLDYFYYLIAVLGVVNLVYFWYCARGY---RYKVGLPIED 601

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0015706 "nitrate transport" evidence=IMP

GO:0080054 "low affinity nitrate transmembrane transporter activity" evidence=IDA

GO:0080055 "low affinity nitrate transport" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 5.6e-55, Sum P(2) = 5.6e-55
 Identities = 69/196 (35%), Positives = 95/196 (48%)

Query:   235 NFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMT 294
             +F++P  +   F   ++ IW+ LYDR ++PLA K  G     +   RMGIGL  S   M 
Sbjct:   384 SFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMA 443

Query:   295 AWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELP 354
             A AIVE  R  +A + G+ +   A V +S +WQ+P   + G A  F  IGQ EF+Y + P
Sbjct:   444 AAAIVEIIRLHMANDLGLVES-GAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSP 502

Query:   355 KSMXXXXXXXXXXXXXXXXXXXXXIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTA 414
              +M                     I+  V   T R G  GWI  N+N GH DY++WLL  
Sbjct:   503 DAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYFFWLLAG 562

Query:   415 LSMANFLYYLACCKAY 430
             LS+ N   Y      Y
Sbjct:   563 LSLVNMAVYFFSAARY 578

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	451
pfam00854	372	pfam00854, PTR2, POT family	6e-45
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	5e-08
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	5e-07
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	8e-05
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	5e-04

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  160 bits (406), Expect = 6e-45
 Identities = 104/365 (28%), Positives = 160/365 (43%), Gaps = 50/365 (13%)

Query: 31  SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSI 90
            Q+   Y    L++LG+GGI+ +  AFGA+Q D+            +FSW+Y  ++A S+
Sbjct: 30  VQVALFYIGLYLIALGTGGIKPNVSAFGADQFDETQ----DPRRDGFFSWFYFSINAGSL 85

Query: 91  VAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVK--SKANTSLLPGLTQVLV 148
           +A     Y+Q N+G+ +GFG+PAV MLL+ L F L S  Y K      +     +  ++ 
Sbjct: 86  IATIITPYLQQNVGYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIIT 145

Query: 149 ASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPN 208
           A+ KNR+ +LP  +    +   K + R + S+       A +         P  +     
Sbjct: 146 AAGKNRKLQLPKDSHWLYWALEKYNKRSI-SQTKVHTRVAVIFI-------PLPKFWALF 197

Query: 209 SLCTVEQVEELKA-------------------------LIKASSMDRHVTPNFEIPSGSF 243
                  V  L+A                         + +  +MDR + P FEIP  SF
Sbjct: 198 --DQQGSVWLLQAILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASF 255

Query: 244 NIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAAR 303
             F  L + I + + D  V PL    + K   L+L  R G+G+     +    AIVEA R
Sbjct: 256 QSFNPLAVLILLPILDFLVYPLL---RLKR-GLTLPQRFGLGMFILIVANFLAAIVEAKR 311

Query: 304 RSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIAST 363
              A   G++      V +  +W LP L +SG+ +A    G  EF    LP SM S+ + 
Sbjct: 312 PRYAAALGLTSPGW-TVPLFILWSLPELFISGVGLA----GALEFAPDALPSSMMSLWTL 366

Query: 364 LSGAG 368
           LS A 
Sbjct: 367 LSAAA 371

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 54.6 bits (132), Expect = 5e-08
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 6/100 (6%)

Query: 36  LYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTC 95
           LY    L+ +G+G  + +  +   E   K D  +  G     F+ +Y+ ++  S++A   
Sbjct: 120 LYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGG-----FTLFYMGINIGSLIAPII 174

Query: 96  IVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKA 135
              +  N GW VGFG+ AV M++  L  FL    +VK   
Sbjct: 175 TGLLAINYGWHVGFGLAAVGMII-GLVIFLLGRRHVKGIG 213

Length = 498

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 51.8 bits (124), Expect = 5e-07
 Identities = 22/92 (23%), Positives = 49/92 (53%), Gaps = 4/92 (4%)

Query: 36  LYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTC 95
           +++  G +++GSG  +++  +   +  ++GD  +  G     F+ +Y+ ++  S ++   
Sbjct: 105 IFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGG----FTLFYMSINIGSFISPLL 160

Query: 96  IVYIQDNLGWKVGFGVPAVIMLLSALSFFLAS 127
              I +N G+ VGF + AV M++  L+FF   
Sbjct: 161 AGVIAENYGYHVGFNLAAVGMVIGLLTFFAGR 192

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 44.8 bits (106), Expect = 8e-05
 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 11/120 (9%)

Query: 42  LMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVT------- 94
           L++LG+GGI+    AFG +Q ++            +FS++Y  ++A S+ +         
Sbjct: 94  LIALGTGGIKPCVSAFGGDQFEER----QLSLRFRFFSFFYFAINAGSLFSTIITPILRG 149

Query: 95  CIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNR 154
            +        + + FGVP ++M L+ + F + S  Y K     +++  + + +V + K R
Sbjct: 150 DVGCFGCQDCFPLAFGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR 209

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 22/158 (13%)

Query: 225 ASSMDRHVTPNFEIPSG---SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLR 281
           A          FE+P     S N F I+   ++  +       L    K    Q S  ++
Sbjct: 311 ADRNVNRQIFGFEVPPAWFQSLNPFFII---LFSPILAALWTKLGRGNK----QPSTPIK 363

Query: 282 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFN 341
             +GL+ +      + I+  A        G+         +S  W +   VL      F 
Sbjct: 364 FALGLILAGLG---FLILLLAGIWFGGPSGL---------VSVWWLVLSYVLQSFGELFI 411

Query: 342 MIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLI 379
                       P ++ S    +    ++A   +   +
Sbjct: 412 SPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQV 449

Length = 498

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	451
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	100.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	99.11
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.9
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.88
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.84
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.84
TIGR00893	399	2A0114 d-galactonate transporter.	98.83
TIGR00900	365	2A0121 H+ Antiporter protein.	98.82
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.8
PRK03545	390	putative arabinose transporter; Provisional	98.79
PRK12382	392	putative transporter; Provisional	98.77
PRK05122	399	major facilitator superfamily transporter; Provisi	98.75
PRK10054	395	putative transporter; Provisional	98.75
PRK11010	491	ampG muropeptide transporter; Validated	98.73
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.71
PRK09874	408	drug efflux system protein MdtG; Provisional	98.71
PRK10504	471	putative transporter; Provisional	98.69
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.65
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.64
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.63
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.63
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.62
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.6
TIGR00898	505	2A0119 cation transport protein.	98.55
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.53
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.51
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.5
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.5
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.47
PRK03893	496	putative sialic acid transporter; Provisional	98.46
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.45
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.44
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.44
PRK11663	434	regulatory protein UhpC; Provisional	98.44
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.43
PRK11902	402	ampG muropeptide transporter; Reviewed	98.42
TIGR00901	356	2A0125 AmpG-related permease.	98.42
PRK12307	426	putative sialic acid transporter; Provisional	98.36
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.34
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.34
TIGR00895	398	2A0115 benzoate transport.	98.34
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.31
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.31
PRK03633	381	putative MFS family transporter protein; Provision	98.28
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.27
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.25
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.25
PRK09528	420	lacY galactoside permease; Reviewed	98.21
PF13347	428	MFS_2: MFS/sugar transport protein	98.21
PRK09848	448	glucuronide transporter; Provisional	98.21
PRK09705	393	cynX putative cyanate transporter; Provisional	98.21
PRK15011	393	sugar efflux transporter B; Provisional	98.19
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.19
PRK10091	382	MFS transport protein AraJ; Provisional	98.19
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.17
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.16
PRK03699	394	putative transporter; Provisional	98.15
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.11
PLN00028	476	nitrate transmembrane transporter; Provisional	98.1
PRK11043	401	putative transporter; Provisional	98.09
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.09
KOG2532	466	consensus Permease of the major facilitator superf	98.09
PRK09669	444	putative symporter YagG; Provisional	98.08
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.04
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.02
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.01
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.0
PRK10429	473	melibiose:sodium symporter; Provisional	97.99
PRK09952	438	shikimate transporter; Provisional	97.93
PRK10642	490	proline/glycine betaine transporter; Provisional	97.93
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.92
TIGR00891	405	2A0112 putative sialic acid transporter.	97.91
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.88
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.88
PRK10406	432	alpha-ketoglutarate transporter; Provisional	97.86
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.86
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	97.86
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.84
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.83
TIGR00893	399	2A0114 d-galactonate transporter.	97.81
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	97.77
TIGR00896	355	CynX cyanate transporter. This family of proteins	97.7
TIGR00900	365	2A0121 H+ Antiporter protein.	97.67
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	97.65
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.65
PRK15075	434	citrate-proton symporter; Provisional	97.58
PRK03545	390	putative arabinose transporter; Provisional	97.57
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	97.57
PRK11663	434	regulatory protein UhpC; Provisional	97.56
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	97.52
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.51
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	97.49
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	97.49
PRK14995	495	methyl viologen resistance protein SmvA; Provision	97.45
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.45
PRK10091	382	MFS transport protein AraJ; Provisional	97.41
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.37
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.35
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.34
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.34
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.25
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	97.24
PRK11462	460	putative transporter; Provisional	97.21
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.21
KOG3762	618	consensus Predicted transporter [General function	97.17
TIGR00895	398	2A0115 benzoate transport.	97.16
TIGR00891	405	2A0112 putative sialic acid transporter.	97.16
PRK12307	426	putative sialic acid transporter; Provisional	97.15
KOG3764	464	consensus Vesicular amine transporter [Intracellul	97.14
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.13
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	97.08
TIGR00805	633	oat sodium-independent organic anion transporter.	97.08
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.07
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	97.06
PRK09705	393	cynX putative cyanate transporter; Provisional	97.06
PRK11646	400	multidrug resistance protein MdtH; Provisional	97.05
PRK10054	395	putative transporter; Provisional	97.02
PRK10133	438	L-fucose transporter; Provisional	97.02
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.01
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	96.98
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	96.98
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	96.96
PRK03699	394	putative transporter; Provisional	96.95
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	96.94
PRK05122	399	major facilitator superfamily transporter; Provisi	96.91
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	96.91
PRK10504	471	putative transporter; Provisional	96.91
TIGR00898	505	2A0119 cation transport protein.	96.88
PRK09874	408	drug efflux system protein MdtG; Provisional	96.86
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	96.86
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	96.78
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	96.75
TIGR00901	356	2A0125 AmpG-related permease.	96.71
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	96.71
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	96.68
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	96.67
TIGR00805	633	oat sodium-independent organic anion transporter.	96.67
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	96.67
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	96.64
PRK11195	393	lysophospholipid transporter LplT; Provisional	96.62
TIGR00892	455	2A0113 monocarboxylate transporter 1.	96.62
PRK03893	496	putative sialic acid transporter; Provisional	96.6
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	96.55
PRK03633	381	putative MFS family transporter protein; Provision	96.55
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	96.53
PRK11010	491	ampG muropeptide transporter; Validated	96.52
PRK11652	394	emrD multidrug resistance protein D; Provisional	96.49
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	96.48
PRK10489	417	enterobactin exporter EntS; Provisional	96.42
PRK10207	489	dipeptide/tripeptide permease B; Provisional	96.4
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	96.38
KOG2533	495	consensus Permease of the major facilitator superf	96.38
PRK10077	479	xylE D-xylose transporter XylE; Provisional	96.35
PRK11043	401	putative transporter; Provisional	96.35
KOG3626	735	consensus Organic anion transporter [Secondary met	96.35
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	96.34
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	96.29
KOG0569	485	consensus Permease of the major facilitator superf	96.28
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	96.23
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	96.2
KOG2533	495	consensus Permease of the major facilitator superf	96.2
PRK11902	402	ampG muropeptide transporter; Reviewed	96.2
PRK12382	392	putative transporter; Provisional	96.19
PRK09584	500	tppB putative tripeptide transporter permease; Rev	96.19
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	96.03
PTZ00207	591	hypothetical protein; Provisional	96.01
TIGR00897	402	2A0118 polyol permease family. This family of prot	95.98
KOG3764	464	consensus Vesicular amine transporter [Intracellul	95.94
COG2211	467	MelB Na+/melibiose symporter and related transport	95.9
KOG2325	488	consensus Predicted transporter/transmembrane prot	95.9
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	95.76
PRK10642	490	proline/glycine betaine transporter; Provisional	95.73
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	95.71
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	95.6
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	95.55
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	95.48
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	95.34
TIGR00896	355	CynX cyanate transporter. This family of proteins	95.34
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	95.31
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	95.26
PLN00028	476	nitrate transmembrane transporter; Provisional	95.22
PRK10133	438	L-fucose transporter; Provisional	95.12
KOG2532	466	consensus Permease of the major facilitator superf	94.96
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	94.84
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	94.74
PRK15011	393	sugar efflux transporter B; Provisional	94.63
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	94.47
PRK09952	438	shikimate transporter; Provisional	94.39
PRK15462	493	dipeptide/tripeptide permease D; Provisional	94.29
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	94.24
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	94.23
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	94.2
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	93.88
KOG3626	735	consensus Organic anion transporter [Secondary met	93.7
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	93.53
KOG0254	513	consensus Predicted transporter (major facilitator	93.41
PRK10406	432	alpha-ketoglutarate transporter; Provisional	93.34
KOG0569	485	consensus Permease of the major facilitator superf	93.23
KOG0254	513	consensus Predicted transporter (major facilitator	92.98
KOG2816	463	consensus Predicted transporter ADD1 (major facili	92.97
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	92.78
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	91.48
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	91.03
KOG2615	451	consensus Permease of the major facilitator superf	90.89
KOG2615	451	consensus Permease of the major facilitator superf	90.08
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	89.92
KOG3098	461	consensus Uncharacterized conserved protein [Funct	89.9
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	89.71
PRK09528	420	lacY galactoside permease; Reviewed	89.62
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	89.54
PF13347	428	MFS_2: MFS/sugar transport protein	89.22
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	89.12
PRK15075	434	citrate-proton symporter; Provisional	88.57
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	88.52
PRK09669	444	putative symporter YagG; Provisional	88.46
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	88.43
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	88.11
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	88.06
PRK10429	473	melibiose:sodium symporter; Provisional	87.66
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	87.4
PRK11462	460	putative transporter; Provisional	86.38
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	85.43
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	85.27
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	84.56
COG2270	438	Permeases of the major facilitator superfamily [Ge	83.8
PRK09848	448	glucuronide transporter; Provisional	80.41

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=1.4e-71  Score=584.76  Aligned_cols=424  Identities=39%  Similarity=0.687  Sum_probs=376.5

Q ss_pred             EeeehhhhcCCCCCCCC--CcCCCCCCCCCccchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHH
Q 013020            2 VLLWSTTILPGAKPPAC--DQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS   79 (451)
Q Consensus         2 ~~l~~~~~~~~~~p~~c--~~~~~~c~~~~~~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~   79 (451)
                      .+||+++++|.++|++|  ....+.|+.|++.+...+|.+|.++++|+|+.|||+.++++||||+.+++++ .++.++||
T Consensus       119 ~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~-~~~~~fFn  197 (571)
T KOG1237|consen  119 FGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEV-KGIPSFFN  197 (571)
T ss_pred             HHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchh-hCcccchh
Confidence            57899999999999998  3335689999999999999999999999999999999999999998777655 56779999


Q ss_pred             HHHHHHHHHHHHHhhhhheeeeccCccchhhHHHHHHHHHHHHHHhcCccEeecCCCCCchhHHHHHHHHHHHhcCCCCC
Q 013020           80 WYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLP  159 (451)
Q Consensus        80 ~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~~i~~~i~li~f~~g~~~~~~~~p~~~~l~~~~~vl~~a~~~~~~~~~  159 (451)
                      |||+.+|+|++++.++..|+|++.||.+||+++++.|.+++++|+.|++.|++++|.++|++++.+|+++++++++.+.+
T Consensus       198 W~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~  277 (571)
T KOG1237|consen  198 WFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVS  277 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887766


Q ss_pred             CcccchhhccCCCccccCCCCchhhhhhhhhhcCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHH---------------
Q 013020          160 TQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIK---------------  224 (451)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~---------------  224 (451)
                      .+. ..+...........+++.++++|+|++....+.   .++...++|.+|+++||||+|.+++               
T Consensus       278 ~~~-~~~~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~---~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~  353 (571)
T KOG1237|consen  278 LDP-EELYYDCTDSVAIEGTKPFRFLDKAALKTSDDL---KDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVY  353 (571)
T ss_pred             Ccc-hhccccccccccccCCcccchhhHhhccCCccc---ccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHH
Confidence            542 111111112222334678899999998754331   2344568899999999999999987               


Q ss_pred             ----------HhhccCcCCCCccccCchhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHH
Q 013020          225 ----------ASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMT  294 (451)
Q Consensus       225 ----------~~~md~~~~~g~~ip~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~l  294 (451)
                                +.+|||+++++++||+++++.+..+.+++++|+++++.+|+.||.++++.++++++||++|++++.+++.
T Consensus       354 aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm~  433 (571)
T KOG1237|consen  354 AQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSMA  433 (571)
T ss_pred             HhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHHHHH
Confidence                      5679999984599999999999999999999999999999999999988889999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHH
Q 013020          295 AWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANL  374 (451)
Q Consensus       295 v~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~  374 (451)
                      +++++|.+|++.+.++     ....++||++||+|||+|+|+||+|.+++++||+|+|||++||++.+++|+++.|+||+
T Consensus       434 ~aa~vE~krl~~~~~~-----~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~  508 (571)
T KOG1237|consen  434 VAGIVEAKRLKTAVSL-----LVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNY  508 (571)
T ss_pred             HHHHHHHHHhhhhhhc-----cCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999887761     12347899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhccccccCCCCCCCC-CCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcCcccCCC
Q 013020          375 VASLIMNAVDDITKRGGNGGWIP-SNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRV  437 (451)
Q Consensus       375 l~~~l~~~~~~~s~~~~~~~w~~-~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~~~~~~~  437 (451)
                      ++.+++++++..+.+  ..+|++ +|+|++|+|+|||++++++.++.+.|..++++|+++..+.
T Consensus       509 lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~~  570 (571)
T KOG1237|consen  509 LSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDKD  570 (571)
T ss_pred             HHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeeccccC
Confidence            999999999988743  348999 9999999999999999999999999999999999877653

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=4.6e-50  Score=403.88  Aligned_cols=361  Identities=16%  Similarity=0.170  Sum_probs=267.0

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhh
Q 013020           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG  110 (451)
Q Consensus        31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~  110 (451)
                      .....+|++|++|++|+|++|||++++++|||+++|+     |||.+|++||+++|+|++++|++++++++++||+.+|+
T Consensus       115 ~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp-----rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~  189 (498)
T COG3104         115 SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP-----RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFG  189 (498)
T ss_pred             ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc-----ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHH
Confidence            4567899999999999999999999999999999999     59999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCccEeecC--CCCCchhH----------HHHHHHHH---HHh-cCCC----CCC-cccchhhcc
Q 013020          111 VPAVIMLLSALSFFLASPFYVKSK--ANTSLLPG----------LTQVLVAS---FKN-RRTK----LPT-QATEEMYHH  169 (451)
Q Consensus       111 i~~i~~~i~li~f~~g~~~~~~~~--p~~~~l~~----------~~~vl~~a---~~~-~~~~----~~~-~~~~~~~~~  169 (451)
                      +++++|.+++++|++++|++.+..  |..+|.+.          +.+++...   ..+ +...    .+. .....+..+
T Consensus       190 ~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~  269 (498)
T COG3104         190 LAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAE  269 (498)
T ss_pred             HHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999887653  33333211          11111111   000 0000    000 000000000


Q ss_pred             CCCccccCCCCchhhhhhhhhhcCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCcCCCCccccCchhhhhHHH
Q 013020          170 GKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAIL  249 (451)
Q Consensus       170 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g~~ip~~~l~~~n~l  249 (451)
                      ........ +++.|.+ .++....         ....+|.++  +|-.++-.++..+..|++.. |+++|++|+|++||+
T Consensus       270 ~~~~~~~~-~er~r~~-~~~~Lfl---------~~~iFW~~~--~Q~~ssl~~~a~~~v~~~~~-g~~vp~~~fQslNp~  335 (498)
T COG3104         270 AFRSPKVF-DERRRLL-AAIPLFL---------FAVIFWALY--EQMGSSLNLYADRNVNRQIF-GFEVPPAWFQSLNPF  335 (498)
T ss_pred             HhccCccH-HHHHHHH-HHHHHHH---------HHHHHHHHH--HhccchHHHHHHHhhccccc-ceecCHHHHHhhCHH
Confidence            00000000 1111211 1111110         124566643  44444455554666788855 799999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHH
Q 013020          250 TLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLP  329 (451)
Q Consensus       250 ~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~  329 (451)
                      +|++++|+++++|+|+.++. ++   |+++.|+++|+++.+++++++........   .         ....+|++|+++
T Consensus       336 ~Iii~~pI~a~l~~~l~~~~-~~---ps~~~KFalGl~l~g~~fl~l~~~~~~~~---~---------~~~~~s~~~lil  399 (498)
T COG3104         336 FIILFSPILAALWTKLGRGN-KQ---PSTPIKFALGLILAGLGFLILLLAGIWFG---G---------PSGLVSVWWLVL  399 (498)
T ss_pred             HHHHHHHHHHHHHhHhhcCC-CC---CCcchHHHHHHHHHHHHHHHHHHHHHhhc---C---------CCCCcCHHHHHH
Confidence            99999999999999988764 44   89999999999999999999988864321   0         124799999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHH
Q 013020          330 YLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYY  409 (451)
Q Consensus       330 ~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f  409 (451)
                      .|+++++||+|++|+|+|+++++||++++|++||.|+++.++|+.+++.+...... +.         +-.+......+|
T Consensus       400 ~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~~---------~~~~~~~~~~~F  469 (498)
T COG3104         400 SYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-TD---------PAYTAFIEGRVF  469 (498)
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccc-cc---------hhhhhhhhhhhH
Confidence            99999999999999999999999999999999999999999999999988874221 00         001122345789


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCcccCC
Q 013020          410 WLLTALSMANFLYYLACCKAYGPFKGR  436 (451)
Q Consensus       410 ~~la~l~lv~~~~~~~~~~~y~~~~~~  436 (451)
                      +.++...++..++++..+++.+|..+.
T Consensus       470 ~~~g~v~i~~~~~~~~~~~~~~r~~~~  496 (498)
T COG3104         470 GTIGVVAIVIGILLLLLSPKLNRMMKG  496 (498)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhhcC
Confidence            999999999999999999998876654

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=100.00  E-value=2.7e-46  Score=379.26  Aligned_cols=315  Identities=31%  Similarity=0.455  Sum_probs=211.2

Q ss_pred             CCccchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccc
Q 013020           28 ATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKV  107 (451)
Q Consensus        28 ~~~~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~  107 (451)
                      +++.+.+.+|+||.++++|+|++|||++++++|||+++++    ++++++||||||++|+|++++++.++|+|+++||++
T Consensus        28 ~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~----~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~  103 (372)
T PF00854_consen   28 PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD----SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFL  103 (372)
T ss_dssp             ------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT----THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHH
T ss_pred             hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch----hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhh
Confidence            3455689999999999999999999999999999998864    589999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhcCccEeec-CCCCCchhH-HHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhhh
Q 013020          108 GFGVPAVIMLLSALSFFLASPFYVKS-KANTSLLPG-LTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFL  185 (451)
Q Consensus       108 ~F~i~~i~~~i~li~f~~g~~~~~~~-~p~~~~l~~-~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  185 (451)
                      +|++|+++|++++++|+.++++|++. +|.++++.+ ...++.++.+++....+... ......................
T Consensus       104 ~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  182 (372)
T PF00854_consen  104 GFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRKLAVPKGS-SWLDWALFQYSERSIFGIIVFI  182 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHCCCH-HHH-HHHHHHHHHHCCCCCCCCCCHH
T ss_pred             hhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhhcccccch-HHHHHhhhhhhhhhhhhhhhhc
Confidence            99999999999999999999999988 778888877 44455555555544333111 1111100000000000011111


Q ss_pred             hhhhhhcCCCCCCCCCCCCCCCCCc-chhHHHHHHHHHHH-------------------------HhhccCcCCCC-ccc
Q 013020          186 NKACMAKHPEQDLTPDGRASNPNSL-CTVEQVEELKALIK-------------------------ASSMDRHVTPN-FEI  238 (451)
Q Consensus       186 ~~a~~~~~~~~~~~~~~~~~~~w~l-~~~~~v~~~k~~~~-------------------------~~~md~~~~~g-~~i  238 (451)
                      + +.......         ...|.. +++++++++|.+.+                         ..+||+.+. + +++
T Consensus       183 ~-~~~~~~~~---------~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i  251 (372)
T PF00854_consen  183 R-AAVIFFPE---------IFFWALFCQVQRVEELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIG-GLFGI  251 (372)
T ss_dssp             H-HHHHHCCC---------HHHHTTTSSTTTHHHCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------
T ss_pred             c-chhhhhhh---------hhhcccCCccceeeeeeeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccc-ccccc
Confidence            1 11111110         111211 34566666665543                         356777787 6 999


Q ss_pred             cCchhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccc
Q 013020          239 PSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRA  318 (451)
Q Consensus       239 p~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~  318 (451)
                      |++++|++|++++++++|+++++++|++++ +++   +++++|+++|++++++++++++.+|.+|.....++|       
T Consensus       252 p~~~l~~~n~i~iii~~pi~~~~~~p~~~~-~~~---~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~-------  320 (372)
T PF00854_consen  252 PPAWLQSFNPIFIIIFIPILDRVVYPLLRR-GIQ---PSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG-------  320 (372)
T ss_dssp             -SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-HHHHHHHHTTTHHHH---HH----T-------
T ss_pred             ccchhhhHHHHHHHHHHHHHHHHHhHHhhh-ccc---chhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC-------
Confidence            999999999999999999999999999983 333   899999999999999999999999997776555444       


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHH
Q 013020          319 VVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSA  371 (451)
Q Consensus       319 ~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~ai  371 (451)
                        .++.+|++|+|++.+++|.++++++++..++.+|+++++.|||+|++..++
T Consensus       321 --~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~~~  371 (372)
T PF00854_consen  321 --KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALSAF  371 (372)
T ss_dssp             --T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH--
T ss_pred             --CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHhcc
Confidence              566799999999999999999999999888888888888888888876654

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=100.00  E-value=8e-42  Score=365.61  Aligned_cols=337  Identities=21%  Similarity=0.385  Sum_probs=269.6

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeecc-------C
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL-------G  104 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~-------g  104 (451)
                      +...++++|+++++|+|++|||++++++|||++++.    ++++++|+||||++|+|+++++++++++++++       |
T Consensus        84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~----~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~  159 (654)
T TIGR00926        84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL----SLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDC  159 (654)
T ss_pred             HHHHHHHHHHHHHhhccccccCchhhhHhhcCccch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcc
Confidence            456688999999999999999999999999987655    57999999999999999999999999998554       7


Q ss_pred             ccchhhHHHHHHHHHHHHHHhcCccEeecCCCCCchhHHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhh
Q 013020          105 WKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRF  184 (451)
Q Consensus       105 ~~~~F~i~~i~~~i~li~f~~g~~~~~~~~p~~~~l~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (451)
                      |+++|++|+++|++++++|+.++|+|++.+|.++++.+..++++.+++++......+                  ...+|
T Consensus       160 ~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~------------------~~~~~  221 (654)
T TIGR00926       160 YPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH------------------WPLHW  221 (654)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc------------------cchhH
Confidence            999999999999999999999999998888888888888888888877643211110                  01234


Q ss_pred             hhhhhhhcCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHH-------------------------HhhccCcCCCCcccc
Q 013020          185 LNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIK-------------------------ASSMDRHVTPNFEIP  239 (451)
Q Consensus       185 l~~a~~~~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~-------------------------~~~md~~~~~g~~ip  239 (451)
                      +|++...                   ..+++++++|.+++                         +.+||++++ ++++|
T Consensus       222 ld~a~~~-------------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~-g~~ip  281 (654)
T TIGR00926       222 LDYAKDK-------------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVG-GFEIQ  281 (654)
T ss_pred             HHHhccc-------------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccC-CEecC
Confidence            4443321                   01234444444433                         667888877 89999


Q ss_pred             CchhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhh------------
Q 013020          240 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIA------------  307 (451)
Q Consensus       240 ~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~------------  307 (451)
                      ++++|++|++++++++|+++..++|.++|++.+   +++++|+++|++++++++++++++|.+++...            
T Consensus       282 ~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~~~~~~~~~~  358 (654)
T TIGR00926       282 PDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQLKVNPTLPEEPSANEIFLQ  358 (654)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcceEEE
Confidence            999999999999999999999999999887544   79999999999999999999999999875100            


Q ss_pred             -------------------------------------------hh------------------c-------------C--
Q 013020          308 -------------------------------------------IN------------------E-------------G--  311 (451)
Q Consensus       308 -------------------------------------------~~------------------~-------------g--  311 (451)
                                                                 ..                  .             +  
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (654)
T TIGR00926       359 VLNTDCTICDFSVLSKRVLPHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNCPKTTDAHELEPKIS  438 (654)
T ss_pred             EecCCCCcceEEEEecCCcccccccccCccccccccccccccccccccceEEEEeccccccccCCCCccccceeecCCce
Confidence                                                       00                  0             0  


Q ss_pred             --C-----------------------------------------------------------------------------
Q 013020          312 --I-----------------------------------------------------------------------------  312 (451)
Q Consensus       312 --~-----------------------------------------------------------------------------  312 (451)
                        +                                                                             
T Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  518 (654)
T TIGR00926       439 YVLLLSQGGYQLTANTDKPTDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFYFRGTKYPANTCDRI  518 (654)
T ss_pred             EEEEEecCCcceeeeeecCccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccccccccccceeeeeecccc
Confidence              0                                                                             


Q ss_pred             ------------C-----------CCc------------cccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchh
Q 013020          313 ------------S-----------DDL------------RAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM  357 (451)
Q Consensus       313 ------------~-----------~~~------------~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~  357 (451)
                                  .           ++.            .+.+++|++||+|||+++++||++.+++++||.|+|||++|
T Consensus       519 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~m  598 (654)
T TIGR00926       519 DNAKSSTFLSNQLDMGIYYLIVITENSKIDELQAQIVELVSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNM  598 (654)
T ss_pred             cccccccccccccccceEEEEEEcCCCCCCcceeEEEEecCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHH
Confidence                        0           000            01245899999999999999999999999999999999999


Q ss_pred             hhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 013020          358 SSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY  430 (451)
Q Consensus       358 kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y  430 (451)
                      |+..+++|.++.++|+.++..+...-...                 +...-|..++.++++..++|.++++.|
T Consensus       599 ks~~~a~~~~~~~~g~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~f~~~a~~Y  654 (654)
T TIGR00926       599 KSVLQALWLLTVAIGNLIVVVIAEFENFS-----------------VQAAEFFLFASLMLVVMAIFSILAYFY  654 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCh-----------------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999998766442211                 123456789999999999999999876

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=2.8e-39  Score=335.60  Aligned_cols=361  Identities=14%  Similarity=0.097  Sum_probs=255.7

Q ss_pred             hHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHHH
Q 013020           34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA  113 (451)
Q Consensus        34 ~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~~  113 (451)
                      ..+++++.++++|+|.+|||.+++++|+|+++|+     +|+++|+++|+++|+|++++|++++++++++||+++|++++
T Consensus       101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~-----~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaa  175 (493)
T PRK15462        101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP-----RRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAA  175 (493)
T ss_pred             hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc-----cccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHH
Confidence            4477888999999999999999999999987765     68999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCccEeecCC-CCCchh--HHHH-------HH--HH-HHHhcCC--CCCCcc------cchh---hcc
Q 013020          114 VIMLLSALSFFLASPFYVKSKA-NTSLLP--GLTQ-------VL--VA-SFKNRRT--KLPTQA------TEEM---YHH  169 (451)
Q Consensus       114 i~~~i~li~f~~g~~~~~~~~p-~~~~l~--~~~~-------vl--~~-a~~~~~~--~~~~~~------~~~~---~~~  169 (451)
                      ++|++++++|+.++|++.+..+ ..+|.+  +...       ++  .. .......  ......      ....   +..
T Consensus       176 igm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (493)
T PRK15462        176 VGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIY  255 (493)
T ss_pred             HHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998877755311 112221  1000       00  00 0000000  000000      0000   000


Q ss_pred             CCCccccCCCCchhhhhhhhhhcCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCcCCCCccccCchhhhhHHH
Q 013020          170 GKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAIL  249 (451)
Q Consensus       170 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g~~ip~~~l~~~n~l  249 (451)
                      ..   .....++.+....-.. .         .....+|.+|  +|....-+++..+++|++++ |+++|++|+|++||+
T Consensus       256 ~~---~~~~~er~r~~~~~~l-~---------~~~~~Fw~~~--~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~qslNp~  319 (493)
T PRK15462        256 RK---AENQKQRKELGLIVTL-T---------FFSMLFWAFA--QQGGSSISLYIDRFVNRDMF-GYTVPTAMFQSINAF  319 (493)
T ss_pred             Hh---cCCHHHHhhHHHHHHH-H---------HHHHHHHHHH--HHhhHHHHHHHHHhccchhc-ceeeCHHHHHhHhHH
Confidence            00   0001111111100000 0         0124678654  67777777887889999998 999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHH
Q 013020          250 TLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLP  329 (451)
Q Consensus       250 ~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~  329 (451)
                      +|+++.|++.++|.++.+|. ++   |+.+.|+++|+++.++||+++.+....    ..++         ..+|++|++.
T Consensus       320 ~ii~l~P~~a~lw~~l~~~~-~~---~s~~~Kfa~g~~~~g~~f~~l~~~~~~----~~~~---------~~~s~~wl~~  382 (493)
T PRK15462        320 AVMLCGVFLAWVVKESVAGN-RT---VRIWGKFALGLGLMSAGFCILTLSARW----SAMY---------GHSSLPLMVL  382 (493)
T ss_pred             HHHHHHHHHHHHHHHHhcCC-CC---CCcHHHHHHHHHHHHHHHHHHHHHHhh----cCCC---------CCcCHHHHHH
Confidence            99999999999998775542 23   899999999999999999999887632    1111         2599999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHH-HHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHH
Q 013020          330 YLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGL-SAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYY  408 (451)
Q Consensus       330 ~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~-aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~  408 (451)
                      .|+++|+||++++|+|++++++.||++++|++||+|++.. ++|+.+++.+.+.....+..    +-...+-+..++..+
T Consensus       383 ~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~  458 (493)
T PRK15462        383 GLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFD----ASGAINYSINAYIEV  458 (493)
T ss_pred             HHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC----ccccccchhhhHHHH
Confidence            9999999999999999999999999999999999999955 89999999998887532100    000000011246778


Q ss_pred             HHHHHHHHHHH--HHHHHHHhhhcCcccCC
Q 013020          409 YWLLTALSMAN--FLYYLACCKAYGPFKGR  436 (451)
Q Consensus       409 f~~la~l~lv~--~~~~~~~~~~y~~~~~~  436 (451)
                      |..++.++++.  .+.+.+.-+.+|.|++.
T Consensus       459 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
T PRK15462        459 FDQITWGALACVGVVLMIWLYQALKFRNRA  488 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            88888877665  45556666677766654

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=3.3e-35  Score=307.94  Aligned_cols=360  Identities=11%  Similarity=0.121  Sum_probs=248.2

Q ss_pred             hHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHHH
Q 013020           34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA  113 (451)
Q Consensus        34 ~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~~  113 (451)
                      .++++++.++++|+|++|||..++++|+|+++++     ||++.|+++|+++|+|+++++.+++++.+++||+++|.+++
T Consensus       106 ~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~-----~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~  180 (489)
T PRK10207        106 DLIFIALGTIAVGNGLFKANPASLLSKCYPPKDP-----RLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCG  180 (489)
T ss_pred             hHHHHHHHHHHhccccccCCHHHHHHHhcCCCch-----hhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence            3577899999999999999999999999987654     57889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCccEeec--CCCCCchh--HHHHH------HHHHHH--hcCCCCCCccc-------ch-hhccCCCc
Q 013020          114 VIMLLSALSFFLASPFYVKS--KANTSLLP--GLTQV------LVASFK--NRRTKLPTQAT-------EE-MYHHGKGS  173 (451)
Q Consensus       114 i~~~i~li~f~~g~~~~~~~--~p~~~~l~--~~~~v------l~~a~~--~~~~~~~~~~~-------~~-~~~~~~~~  173 (451)
                      ++++++++.++.+++++++.  +|+++++.  .....      +...+.  ...........       .. +..+....
T Consensus       181 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~  260 (489)
T PRK10207        181 AGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKL  260 (489)
T ss_pred             HHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999888777653  34333321  11100      000000  00000000000       00 00000000


Q ss_pred             cccCCCCchhhhhhhhhhcCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCcCCCCccccCchhhhhHHHHHHH
Q 013020          174 MRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTI  253 (451)
Q Consensus       174 ~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g~~ip~~~l~~~n~l~iii  253 (451)
                         ...++.+.+.......          ....+|..+  +|....-.++..+++|++.. |+++|++++|++|++++++
T Consensus       261 ---~~~~r~r~~~~~~l~~----------~~~~f~~~~--~q~~~~l~l~~~~~~~~~~~-G~~i~~~~~~~~n~~~iii  324 (489)
T PRK10207        261 ---DKTGRNKMFVAFVLML----------EAVVFYILY--AQMPTSLNFFAINNVHHEIL-GFSINPVSFQALNPFWVVV  324 (489)
T ss_pred             ---CHHHHHHHHHHHHHHH----------HHHHHHHHH--HHcccHHHHHHHHhcccccc-ceEECHHHHHhHhHHHHHH
Confidence               0000001111000000          001233221  22222222222235777666 8999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHH
Q 013020          254 WIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVL  333 (451)
Q Consensus       254 ~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l  333 (451)
                      +.|+..+++.++ ++++.+   +++++|+++|+++.+++++++++.+...   ...         ...+|+||+++.|++
T Consensus       325 ~~pl~~~l~~rl-~~r~~~---~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~~~---------~~~~s~~~~i~~~~l  388 (489)
T PRK10207        325 ASPILAGIYTHL-GSKGKD---LSMPMKFTLGMFLCSLGFLTAAAAGMWF---ADA---------QGLTSPWFIVLVYLF  388 (489)
T ss_pred             HHHHHHHHHHHH-hhCCCC---CCcHHHHHHHHHHHHHHHHHHHHHHHhh---cCC---------CCccCHHHHHHHHHH
Confidence            999999865444 443334   8999999999999999999887665311   001         125899999999999


Q ss_pred             HHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHH
Q 013020          334 SGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLT  413 (451)
Q Consensus       334 ~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la  413 (451)
                      +|+||++.+|+++|++++.+|++++|++||+|+++.++|+.+++.+++.+.....  ..++..    .++.+..+|..++
T Consensus       389 ~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~--~~~~~~----~~~~~~~~f~~~~  462 (489)
T PRK10207        389 QSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDN--ITDPLE----TLPVYTNVFGKIG  462 (489)
T ss_pred             HHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cccchh----hhhhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999987753110  000100    1124678999999


Q ss_pred             HHHHHHHHHHHHHhhhcCcccCC
Q 013020          414 ALSMANFLYYLACCKAYGPFKGR  436 (451)
Q Consensus       414 ~l~lv~~~~~~~~~~~y~~~~~~  436 (451)
                      +.+++.+++++++.|+++|..++
T Consensus       463 ~~~~~~~v~~~~~~~~~~~~~~~  485 (489)
T PRK10207        463 LVTLGVAVVMALMVPWLNRMINT  485 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999887443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=9.5e-34  Score=296.32  Aligned_cols=351  Identities=14%  Similarity=0.124  Sum_probs=249.1

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHH
Q 013020           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP  112 (451)
Q Consensus        33 ~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~  112 (451)
                      ...+++++.++++|.|+++|+..++++|+++++++    ++|+++|+++|+++|+|+++|+.+++++++++||+++|.++
T Consensus       102 ~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~----~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~  177 (475)
T TIGR00924       102 PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM----PRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLA  177 (475)
T ss_pred             HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc----ccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence            45678899999999999999999999999987664    36888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCccEeecCCCCCchhHH-----H--HH----HHHHHHhcCCCCCCcccc-h---------hh-ccC
Q 013020          113 AVIMLLSALSFFLASPFYVKSKANTSLLPGL-----T--QV----LVASFKNRRTKLPTQATE-E---------MY-HHG  170 (451)
Q Consensus       113 ~i~~~i~li~f~~g~~~~~~~~p~~~~l~~~-----~--~v----l~~a~~~~~~~~~~~~~~-~---------~~-~~~  170 (451)
                      ++.+++++++++..++.+++.++++++.+..     .  ..    +....+............ .         .+ ...
T Consensus       178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (475)
T TIGR00924       178 AVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRL  257 (475)
T ss_pred             HHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988888776554433332110     0  00    000000000000000000 0         00 000


Q ss_pred             CCccccCCCCchhhhhhhhhhcCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCcCCCCccccCchhhhhHHHH
Q 013020          171 KGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILT  250 (451)
Q Consensus       171 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g~~ip~~~l~~~n~l~  250 (451)
                      .........+..+... .....         .....+|..  .+|....-.++..++||++++ ++++|+++++++|+++
T Consensus       258 ~~~~~~~~~~~~~~~~-~l~l~---------~~~~~~~~~--~~Q~~s~l~l~~~~~~~~~~~-~~~ip~~~~~~~n~~~  324 (475)
T TIGR00924       258 AFKPRLDAVARNKMYA-YIVLF---------LEAVVFWVL--YAQMPTSLNFFADNNMHHEML-GMSVPVIWFQSLNPFW  324 (475)
T ss_pred             HHhccCCHHHHhHHHH-HHHHH---------HHHHHHHHH--HHHhhhHHHHHHHHhcccccc-ceEECHHHHHhhhHHH
Confidence            0000000000000000 00000         000123322  234444444454677898887 8999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHH
Q 013020          251 LTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPY  330 (451)
Q Consensus       251 iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~  330 (451)
                      +++++|++++++.++-|| +++   ++...|+++|+++.++++++++++..    ....         ..++|+||++++
T Consensus       325 iil~~p~~~~~~~~l~~~-~~~---~~~~~k~~~G~~l~~~~~~~~~~~~~----~~~~---------~~~~s~~~~i~~  387 (475)
T TIGR00924       325 VVVGSPVLAMIWTRLGRK-GKD---PTTPLKFTLGMLFCGASFLTFAASIW----FADA---------GGLTSPWFMVLI  387 (475)
T ss_pred             HHHHHHHHHHHHHHHHhC-CCC---CCcHHHHHHHHHHHHHHHHHHHHHHh----hcCC---------CCccCHHHHHHH
Confidence            999999999876555443 333   78999999999999999999987732    1111         236999999999


Q ss_pred             HHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHH
Q 013020          331 LVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYW  410 (451)
Q Consensus       331 y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~  410 (451)
                      |+++|+||++.+|++++++++++|+++||.++|+|.+..++|+.+++.+........      +          ...+|.
T Consensus       388 ~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~------~----------~~~~~~  451 (475)
T TIGR00924       388 YLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ------G----------VTGVFG  451 (475)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------c----------hhhHHH
Confidence            999999999999999999999999999999999999999999999999887754221      1          346788


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCcc
Q 013020          411 LLTALSMANFLYYLACCKAYGPF  433 (451)
Q Consensus       411 ~la~l~lv~~~~~~~~~~~y~~~  433 (451)
                      .+++++++.++++++..|+++|.
T Consensus       452 ~~~~~~~~~~~~~~~~~~~~~k~  474 (475)
T TIGR00924       452 KIGLVTLLVGVVMALMVPWLNRM  474 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999998874

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=4.6e-33  Score=292.88  Aligned_cols=361  Identities=11%  Similarity=0.156  Sum_probs=247.1

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHH
Q 013020           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP  112 (451)
Q Consensus        33 ~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~  112 (451)
                      ...+++++.++++|.|.++|+..++++++|+++++     ++++.++++|+++|+|+++++.+.+++.+++||+++|.++
T Consensus       112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~-----~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~  186 (500)
T PRK09584        112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP-----RLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALS  186 (500)
T ss_pred             HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch-----hhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence            45678899999999999999999999999976544     5778999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCccEeec--CCCCCchhH------HHHHHHHH-HHhcCCCCCCcccchhhcc--------CCCccc
Q 013020          113 AVIMLLSALSFFLASPFYVKS--KANTSLLPG------LTQVLVAS-FKNRRTKLPTQATEEMYHH--------GKGSMR  175 (451)
Q Consensus       113 ~i~~~i~li~f~~g~~~~~~~--~p~~~~l~~------~~~vl~~a-~~~~~~~~~~~~~~~~~~~--------~~~~~~  175 (451)
                      ++.++++++.++..++++++.  +|+++|+..      ...+.... ........+.......+..        ......
T Consensus       187 ~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (500)
T PRK09584        187 VVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAFA  266 (500)
T ss_pred             HHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999888877666543  233333221      11111000 0000000000000000000        000000


Q ss_pred             cCCCCchhhhhhhhhhcCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCcCCCCccccCchhhhhHHHHHHHHH
Q 013020          176 LMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWI  255 (451)
Q Consensus       176 ~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g~~ip~~~l~~~n~l~iii~~  255 (451)
                      ....+..+.+-.... ..         ....+|..+  +|....-..+...++|+++. |+.+|++++|++|++++++++
T Consensus       267 ~~~~~~~~~~~~~~~-~~---------~~i~f~~~~--~q~~~~l~~~~~~~~~~~~~-g~~i~~~~~~s~n~i~iil~~  333 (500)
T PRK09584        267 MKGAARRKMIVAFIL-ML---------EAIIFFVLY--SQMPTSLNFFAIRNVEHSIL-GIAVEPEQYQALNPFWIMIGS  333 (500)
T ss_pred             cCHHHHHHHHHHHHH-HH---------HHHHHHHHH--HHhccHHHHHHHHhcccccc-ceEECHHHHHHHhHHHHHHHH
Confidence            000000000000000 00         001223211  22222211111245677776 899999999999999999999


Q ss_pred             HHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHH
Q 013020          256 GLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSG  335 (451)
Q Consensus       256 pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~  335 (451)
                      |++++++.++.+    +   +++.+|+++|+++.+++++++++....    +.+         ...+|++|++++|+++|
T Consensus       334 p~~~~~~~~l~~----r---~~~~~~~~~G~~l~~l~f~~l~~~~~~----~~~---------~~~vs~~~~~~~~~l~~  393 (500)
T PRK09584        334 PILAAIYNKMGD----R---LPMPHKFAIGMVLCSGAFLVLPLGAKF----AND---------AGIVSVNWLIASYGLQS  393 (500)
T ss_pred             HHHHHHHHHhCc----C---CCcHHHHHHHHHHHHHHHHHHHHHHHh----cCC---------CCccCHHHHHHHHHHHH
Confidence            999987654432    2   578999999999999999998876531    111         23699999999999999


Q ss_pred             HHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCC-CcchhHHHHHHHH
Q 013020          336 LAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNIN-KGHYDYYYWLLTA  414 (451)
Q Consensus       336 igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln-~~~~~~~f~~la~  414 (451)
                      +||++++|.+++++++++|+++||++||+|+++.++|+.+++.+.+.+....       -..+... .+.+..+|..+++
T Consensus       394 ~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~-------~~~~~~~~~~~~~~~f~~~~~  466 (500)
T PRK09584        394 IGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPD-------NVTDPLMSLEVYGRVFLQIGI  466 (500)
T ss_pred             HHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------ccccchhhhhhHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999987654211       0001101 1226788999999


Q ss_pred             HHHHHHHHHHHHhhhcCcccCCCC
Q 013020          415 LSMANFLYYLACCKAYGPFKGRVG  438 (451)
Q Consensus       415 l~lv~~~~~~~~~~~y~~~~~~~~  438 (451)
                      ++++.++++++.+++++|..++++
T Consensus       467 ~~~~~a~~~~~~~~~~~k~~~~~~  490 (500)
T PRK09584        467 ATAVIAVLMLLTAPKLNRMTQDDS  490 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999877665

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.11  E-value=3.2e-08  Score=101.74  Aligned_cols=296  Identities=11%  Similarity=-0.012  Sum_probs=164.1

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHH
Q 013020           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP  112 (451)
Q Consensus        33 ~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~  112 (451)
                      ...+++...+.+++.|...+...+...+.+++       +++.+...++++..++|..+++.+.+++.+..+|++.|.+.
T Consensus       110 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~  182 (417)
T PRK10489        110 LLAIYLLGLWDGFFGSLGVTALLAATPALVGR-------ENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLA  182 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCH-------HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHH
Confidence            45566666667777787778888888877754       35678888999999999999999999988888999999988


Q ss_pred             HHHHHHHHHHHHhcCccEeec-CCCCCchhHHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhhhhhhhhh
Q 013020          113 AVIMLLSALSFFLASPFYVKS-KANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMA  191 (451)
Q Consensus       113 ~i~~~i~li~f~~g~~~~~~~-~p~~~~l~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~  191 (451)
                      ++..+++.+..+.-.+ .+.+ +++.++.....+......+++                          ....+-.....
T Consensus       183 ~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~  235 (417)
T PRK10489        183 AAGTFITLLPLLRLPA-LPPPPQPREHPLRSLLAGFRFLLASP--------------------------VVGGIALLGGL  235 (417)
T ss_pred             HHHHHHHHHHHHhCCC-CCCCCcccccchHHHHHHHHHHHcCh--------------------------HHHHHHHHHHH
Confidence            8777766554432211 1110 111122211111111111100                          00000000000


Q ss_pred             cCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCcCCCCccccCc---hhhhhHHHHHHHHHHHHHHHHhhhhhh
Q 013020          192 KHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSG---SFNIFAILTLTIWIGLYDRAVLPLASK  268 (451)
Q Consensus       192 ~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g~~ip~~---~l~~~n~l~iii~~pl~~~~~~pl~~r  268 (451)
                      ....      . ....|              + ...+...    .+.++.   ++.....+..++...+..++    .+|
T Consensus       236 ~~~~------~-~~~~~--------------~-p~~~~~~----~g~~~~~~g~~~~~~~~g~~ig~~~~~~l----~~~  285 (417)
T PRK10489        236 LTMA------S-AVRVL--------------Y-PALADEV----WQMGAAQIGLLYAAVPLGAALGALTSGWL----AHS  285 (417)
T ss_pred             HHHH------H-hHHHh--------------h-HHHHHhc----cCCChhHhHHHHHHHHHHHHHHHHHHHHh----hhc
Confidence            0000      0 00000              0 0000100    112222   33344444444444444332    122


Q ss_pred             ccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHH
Q 013020          269 IKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEF  348 (451)
Q Consensus       269 ~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef  348 (451)
                             .+..+-+.++.++.+++++...+.                      .++++.+...++.+++.....+....+
T Consensus       286 -------~~~~~~l~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~  336 (417)
T PRK10489        286 -------ARPGLLMLLSTLGSFLAVGLFGLM----------------------PMWILAVLCLALFGYLSAISSLLQYTL  336 (417)
T ss_pred             -------cCcchHHHHHHHHHHHHHHHHHcc----------------------chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   112223455666655555433211                      233444556778888888888888889


Q ss_pred             hhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 013020          349 YYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCK  428 (451)
Q Consensus       349 ~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~  428 (451)
                      ..+..|++.||..+|++.....+|..+++.+.+.+.+..             +   ....++..+++.++..++.....+
T Consensus       337 ~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~-------------g---~~~~~~~~~~~~~~~~~~~~~~~~  400 (417)
T PRK10489        337 LQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM-------------T---PVASASASGFGLLIIGVLLLLVLG  400 (417)
T ss_pred             HHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh-------------c---hhhHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999998888888888888876665321             1   223455566666666666666656


Q ss_pred             hcCcccCCC
Q 013020          429 AYGPFKGRV  437 (451)
Q Consensus       429 ~y~~~~~~~  437 (451)
                      ++++++.+|
T Consensus       401 ~~~~~~~~~  409 (417)
T PRK10489        401 ELRRFRQTP  409 (417)
T ss_pred             ccccccccc
Confidence            666554444

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.90  E-value=1.5e-07  Score=96.40  Aligned_cols=288  Identities=13%  Similarity=0.096  Sum_probs=161.4

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +.+.++++..+.++|.|.+.|...+...|.+++       ++|.+++++.+...++|..+++.+.+++. ++||++.|.+
T Consensus        98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~  169 (400)
T PRK11646         98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRP-------HQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCAT  169 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHH
Confidence            456778888888999999999999998887763       46889999999999999999999999988 7899999998


Q ss_pred             HHHHHHHHHHHHHhcCccEeecCCCCCchhHHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhhhhhhhhh
Q 013020          112 PAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMA  191 (451)
Q Consensus       112 ~~i~~~i~li~f~~g~~~~~~~~p~~~~l~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~  191 (451)
                      .++..++..+......+..+. ++..++...   -+....+++                          .+..+......
T Consensus       170 ~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~--------------------------~~~~~~~~~~~  219 (400)
T PRK11646        170 GAVLFVLAAAFNAWLLPAYKL-STVRTPVRE---GMTRVLRDK--------------------------RFVTYVLTLTG  219 (400)
T ss_pred             HHHHHHHHHHHHHHhCCcccc-cccchhhHH---HHHHHHcCc--------------------------hHHHHHHHHHH
Confidence            877766655443322221110 011111100   000001110                          00000000000


Q ss_pred             cCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCcCCCCccccCchhhhhHHHHHHHHHHHHHHHHhhhhhhccC
Q 013020          192 KHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKG  271 (451)
Q Consensus       192 ~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g~~ip~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~  271 (451)
                                     .+  +...+..   ..+ ...+.. .+ +...-..++..++.+..+.......+    +..|+  
T Consensus       220 ---------------~~--~~~~~~~---~~~-p~~~~~-~~-~~~~~~g~l~~~~~~~~~~~~~~~~~----~~~~r--  270 (400)
T PRK11646        220 ---------------YY--MLAVQVM---LML-PIMVND-IA-GSPSAVKWMYAIEACLSLTLLYPIAR----WSEKR--  270 (400)
T ss_pred             ---------------HH--HHHHHHH---Hhh-hhhHHh-hc-CCchHHHHHHHHHHHHHHHHHHHHHH----HHHHh--
Confidence                           00  0000000   000 000000 01 10011122333333333222222222    22221  


Q ss_pred             CCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhc
Q 013020          272 KPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYT  351 (451)
Q Consensus       272 ~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~  351 (451)
                          .+..+++..|+++.+++++..+...                      +.++.+....+.++++....|.....+.+
T Consensus       271 ----~~~~~~~~~~~~~~~~~~~~l~~~~----------------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~  324 (400)
T PRK11646        271 ----FRLEHRLMAGLLIMSLSMFPIGMVS----------------------NLQQLFTLICLFYIGSIIAEPARETLSAS  324 (400)
T ss_pred             ----cchhHHHHHHHHHHHHHHHHHHHhh----------------------hHHHHHHHHHHHHHHHHHHHccHHHHHHh
Confidence                2333456777777777765444331                      12334444577889999999999999999


Q ss_pred             ccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 013020          352 ELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYL  424 (451)
Q Consensus       352 ~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~  424 (451)
                      .+|++.+|..+|+..+..++|..+|+.+.+...+...     +     .+  .....|+..++++++..+.+.
T Consensus       325 ~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~-----~-----~~--~~~~~~~~~~~~~~~~~~~~~  385 (400)
T PRK11646        325 LADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK-----A-----LN--QPELPWMMLGIIGLITLLALY  385 (400)
T ss_pred             cCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh-----h-----cC--CcchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888877654320     0     01  123445556666666665544

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.88  E-value=4.1e-07  Score=89.66  Aligned_cols=264  Identities=19%  Similarity=0.159  Sum_probs=174.5

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhh
Q 013020           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG  110 (451)
Q Consensus        31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~  110 (451)
                      .+...++++..+.+++.|...+...++..|.+++       ++|...+++.+.+.++|..+++.+.+++.++.+|+..|.
T Consensus        85 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  157 (352)
T cd06174          85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP-------KERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFL  157 (352)
T ss_pred             ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCc-------cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            3467788888999999999999999999999875       257889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCccEeecCCCCCchhHHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhhhhhhhh
Q 013020          111 VPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACM  190 (451)
Q Consensus       111 i~~i~~~i~li~f~~g~~~~~~~~p~~~~l~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~  190 (451)
                      +.++..+++.+......             +..........-..    .     .                .....    
T Consensus       158 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~----~-----~----------------~~~~~----  195 (352)
T cd06174         158 ILAILGLLLALLLLFLL-------------RLLLLLALAFFLLS----F-----G----------------YYGLL----  195 (352)
T ss_pred             HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHH----h-----H----------------HHHHH----
Confidence            98888877766544322             11110000000000    0     0                00000    


Q ss_pred             hcCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCcCCCCccccCchhhhhHHHHHHHHHHHHHHHHhhhhhhcc
Q 013020          191 AKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIK  270 (451)
Q Consensus       191 ~~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g~~ip~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~  270 (451)
                                      .|   ...       +. .+..  +..   +....++.....+..++..++..++.    +|.+
T Consensus       196 ----------------~~---~~~-------~~-~~~~--~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~  239 (352)
T cd06174         196 ----------------TY---LPL-------YL-QEVL--GLS---AAEAGLLLSLFGLGGILGALLGGLLS----DRLG  239 (352)
T ss_pred             ----------------HH---HHH-------HH-HHhc--CCC---HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence                            00   000       00 0000  000   11123445555666666666665543    3322


Q ss_pred             CCCCCCCcch-hhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHh
Q 013020          271 GKPCQLSLKL-RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFY  349 (451)
Q Consensus       271 ~~~~~~s~~~-ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~  349 (451)
                      ++       + -+.++.++.+++++.....                      .+.++.+..+++.++++....+....++
T Consensus       240 ~~-------~~~~~~~~~~~~i~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~  290 (352)
T cd06174         240 RR-------RLLLLIGLLLAALGLLLLALA----------------------PSLALLLVALLLLGFGLGFAFPALLTLA  290 (352)
T ss_pred             hh-------hHHHHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHHHhccchhHHHHH
Confidence            11       1 3566777777776655433                      1256677889999999999999999999


Q ss_pred             hcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 013020          350 YTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYL  424 (451)
Q Consensus       350 ~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~  424 (451)
                      .+..|++.|+..+|++.....+|..+++.+.+...+..      +          ....|...+++.++..++++
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~------~----------~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         291 SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG------G----------YGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------C----------cchHHHHHHHHHHHHHHHhe
Confidence            99999999999999999999999999998887764210      1          23456667777776666543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.84  E-value=2.3e-06  Score=87.46  Aligned_cols=267  Identities=14%  Similarity=0.039  Sum_probs=146.4

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +.+.+++...+.+++.|...+...+...|.+++       +++.+..++.+...++|..+++.+.+++.++.+|++.|.+
T Consensus       100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~  172 (406)
T PRK15402        100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEE-------ADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVL  172 (406)
T ss_pred             cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhCh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHH
Confidence            345677777778888888888888888888864       2456677888888889999999999999888999999998


Q ss_pred             HHHHHHHHHHHHHhcCccEeecCCCCCchhHHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhhhhhhhhh
Q 013020          112 PAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMA  191 (451)
Q Consensus       112 ~~i~~~i~li~f~~g~~~~~~~~p~~~~l~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~  191 (451)
                      .++..+++.+......+.-.+++++..+.....+-.....+++                          ....+..+...
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~  226 (406)
T PRK15402        173 FAALAALSFFGLWRAMPETAGRVGEKLSLKELGRDYKLVLKNR--------------------------RFVAGALALGL  226 (406)
T ss_pred             HHHHHHHHHHHHHHhCCCCCccccccccHHHHHHHHHHHHcCc--------------------------HHHHHHHHHHH
Confidence            8777776655433222211111111111111111000000100                          00000000000


Q ss_pred             cCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCcCCCCccccCch---hhhhHHHHHHHHHHHHHHHHhhhhhh
Q 013020          192 KHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGS---FNIFAILTLTIWIGLYDRAVLPLASK  268 (451)
Q Consensus       192 ~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g~~ip~~~---l~~~n~l~iii~~pl~~~~~~pl~~r  268 (451)
                      ..                ........-...++ .+.    .    +..+..   ....-.+..++..++..++    .+|
T Consensus       227 ~~----------------~~~~~~~~~~p~~~-~~~----~----g~~~~~~g~~~~~~~~~~~~g~~~~g~l----~~r  277 (406)
T PRK15402        227 VS----------------LPLLAWIALSPVIL-ISG----E----QLSSYEYGLLQVPVFGALIAGNLTLARL----TSR  277 (406)
T ss_pred             HH----------------HHHHHHHHHhHHHH-HHH----h----CCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHh
Confidence            00                00000000000000 000    0    111221   1111112222223333332    233


Q ss_pred             ccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHH
Q 013020          269 IKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEF  348 (451)
Q Consensus       269 ~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef  348 (451)
                      .       ...+-+.+|.++.+++.+...+....                 ...+.+|++...++.++++....+.....
T Consensus       278 ~-------~~~~~~~~~~~~~~~g~~~~~~~~~~-----------------~~~~~~~~~~~~~~~g~g~~~~~~~~~~~  333 (406)
T PRK15402        278 R-------PLRSLIRMGLWPMVAGLLLAALATVI-----------------SSHAYLWLTAGLSLYAFGIGLANAGLYRL  333 (406)
T ss_pred             c-------CHHHHHHHHHHHHHHHHHHHHHHHHc-----------------ccccHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            1       22233566777777776665554210                 12467778888899999999988877776


Q ss_pred             hhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhcc
Q 013020          349 YYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDD  385 (451)
Q Consensus       349 ~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~  385 (451)
                      ... ++++.+|.+.+++.+...+|..+|+.+.+.+.+
T Consensus       334 ~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~  369 (406)
T PRK15402        334 TLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL  369 (406)
T ss_pred             Hhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            654 455899999999999999999999888877653

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.84  E-value=1.7e-07  Score=97.76  Aligned_cols=62  Identities=15%  Similarity=-0.022  Sum_probs=53.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      +.++++...++.+++.....+...+.+.+..|++.++..+|+......+|+.+++.+.+.+.
T Consensus       332 ~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~  393 (455)
T TIGR00892       332 DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLV  393 (455)
T ss_pred             hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeee
Confidence            34556667788999999999999999999999999999999999999999999998887654

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.83  E-value=1.3e-06  Score=87.36  Aligned_cols=86  Identities=12%  Similarity=0.177  Sum_probs=73.9

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +.+.++++..+.++|.|...+...++..|.+++       ++|.+.++++....++|.++++.+.+++.++.+|++.|.+
T Consensus        81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  153 (399)
T TIGR00893        81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPA-------SERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFII  153 (399)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCH-------HHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHH
Confidence            567788888999999999999999999998864       4688999999999999999999999998889999999998


Q ss_pred             HHHHHHHHHHHHH
Q 013020          112 PAVIMLLSALSFF  124 (451)
Q Consensus       112 ~~i~~~i~li~f~  124 (451)
                      .++..++..+..+
T Consensus       154 ~~~~~~~~~~~~~  166 (399)
T TIGR00893       154 EGVLGIIWGVLWL  166 (399)
T ss_pred             HHHHHHHHHHHhh
Confidence            8777666555443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.82  E-value=5.4e-07  Score=89.64  Aligned_cols=266  Identities=12%  Similarity=-0.005  Sum_probs=153.8

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +.+.++++..+.+++.|...|...++.+|.+++       ++|.+.++++..+.++|.++++.+.+++.+..||++.|.+
T Consensus        91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~  163 (365)
T TIGR00900        91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPE-------EQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWV  163 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            567788899999999999999999999998874       4688999999999999999999999999889999999998


Q ss_pred             HHHHHHHHHHHHHhcCccEeecCCCCCchh-HHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhhhhhhhh
Q 013020          112 PAVIMLLSALSFFLASPFYVKSKANTSLLP-GLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACM  190 (451)
Q Consensus       112 ~~i~~~i~li~f~~g~~~~~~~~p~~~~l~-~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~  190 (451)
                      .++..+++.+..+.-+..-.+ +++..+.. ...+-.....+.            ...          ......+-....
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------~~~----------~~~~~~~~~~~~  220 (365)
T TIGR00900       164 DAVGFAISALLIVSVRIPELA-ASEIQALSNAVLRDTREGIKF------------VLK----------NPLLRTLLLLAL  220 (365)
T ss_pred             HHHHHHHHHHHHHhcccccCC-CccccccchhHHHHHHhHHHH------------HHc----------CcHHHHHHHHHH
Confidence            887776665544332211100 10111111 000000000000            000          000000000000


Q ss_pred             hcCCCCCCCCCCCCCCCCCcchhHHHH-HHHHHHHHhhccCcCCCCccccCc---hhhhhHHHHHHHHHHHHHHHHhhhh
Q 013020          191 AKHPEQDLTPDGRASNPNSLCTVEQVE-ELKALIKASSMDRHVTPNFEIPSG---SFNIFAILTLTIWIGLYDRAVLPLA  266 (451)
Q Consensus       191 ~~~~~~~~~~~~~~~~~w~l~~~~~v~-~~k~~~~~~~md~~~~~g~~ip~~---~l~~~n~l~iii~~pl~~~~~~pl~  266 (451)
                      ...                 ....... ..-..+..+.        .+.++.   .+.....+..++..++..++    .
T Consensus       221 ~~~-----------------~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~  271 (365)
T TIGR00900       221 LFN-----------------LVFAPAIVALFPYVQSKY--------LGRGSTHYGWVLAAFGLGALLGALLLGLL----G  271 (365)
T ss_pred             HHH-----------------HHHHHHHHHHhHHHHHHH--------hCCchHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence            000                 0000000 0000000000        112222   23333334444444444432    2


Q ss_pred             hhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhH
Q 013020          267 SKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQT  346 (451)
Q Consensus       267 ~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~  346 (451)
                      +|.       ...+-+..++++.+++++...+..                    + +.++.+...++.+++.....+...
T Consensus       272 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--------------------~-~~~~~~~~~~~~g~~~~~~~~~~~  323 (365)
T TIGR00900       272 RYF-------KRMALMTGAIFVIGLAILVVGLTP--------------------P-NFPLFLVLWFAIGVGYGPINVPQG  323 (365)
T ss_pred             HHh-------chhHHHHHHHHHHHHHHHHHHhhc--------------------h-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            332       111223445555555554433221                    1 355566778999999999999999


Q ss_pred             HHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          347 EFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       347 ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      .+..+..|++.||..+|++.....+|..+++.+.+.+.
T Consensus       324 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~  361 (365)
T TIGR00900       324 TLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLA  361 (365)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888776653

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.80  E-value=2e-06  Score=87.81  Aligned_cols=84  Identities=23%  Similarity=0.184  Sum_probs=70.4

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +...+.++..+.++|.|...|...+...|.+++       ++|....++++.+.++|.++++.+...+.+..+|+..|.+
T Consensus       102 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  174 (406)
T PRK11551        102 DFPSLLVARLLTGVGLGGALPNLIALTSEAVGP-------RLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYV  174 (406)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence            456677788888999999999999999998864       4688899999999999999999988888888999999998


Q ss_pred             HHHHHHHHHHH
Q 013020          112 PAVIMLLSALS  122 (451)
Q Consensus       112 ~~i~~~i~li~  122 (451)
                      .++..++..+.
T Consensus       175 ~~~~~~~~~~~  185 (406)
T PRK11551        175 GGVGPLLLVPL  185 (406)
T ss_pred             HHHHHHHHHHH
Confidence            77765555443

>PRK03545 putative arabinose transporter; Provisional

Probab=98.79  E-value=2.4e-06  Score=86.93  Aligned_cols=282  Identities=12%  Similarity=0.061  Sum_probs=159.3

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +...++++..+.+++.|.+-|...++..|.+++       ++|.+.++++..+.++|..+++.+.+.+.+++||++.|.+
T Consensus        96 ~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~  168 (390)
T PRK03545         96 NFTVLLISRIGIAFAHAIFWSITASLAIRVAPA-------GKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLA  168 (390)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-------hhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHH
Confidence            456677777788888888888888999998874       3678899999999999999999999999889999999999


Q ss_pred             HHHHHHHHHHHHHhcCccEeecCCCCCchhHHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhhhhhhhhh
Q 013020          112 PAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMA  191 (451)
Q Consensus       112 ~~i~~~i~li~f~~g~~~~~~~~p~~~~l~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~  191 (451)
                      .++..++..+......++-+  +++.++.+.    .....|++.                          +..+......
T Consensus       169 ~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~--------------------------~~~~~~~~~~  216 (390)
T PRK03545        169 IGGGALITLLLLIKLLPLLP--SEHSGSLKS----LPLLFRRPA--------------------------LVSLYLLTVV  216 (390)
T ss_pred             HHHHHHHHHHHHHHhCCCCC--CCCcchHHH----HHHHHhCcH--------------------------HHHHHHHHHH
Confidence            88766665544332222111  111111111    111111110                          0000000000


Q ss_pred             cCCCCCCCCCCCCCCCCCcchhHHHHH-HHHHHHHhhccCcCCCCccccCc---hhhhhHHHHHHHHHHHHHHHHhhhhh
Q 013020          192 KHPEQDLTPDGRASNPNSLCTVEQVEE-LKALIKASSMDRHVTPNFEIPSG---SFNIFAILTLTIWIGLYDRAVLPLAS  267 (451)
Q Consensus       192 ~~~~~~~~~~~~~~~~w~l~~~~~v~~-~k~~~~~~~md~~~~~g~~ip~~---~l~~~n~l~iii~~pl~~~~~~pl~~  267 (451)
                      ..                 ........ ...++    .+. .    ..+++   ++.....+.-++..++..++    .+
T Consensus       217 ~~-----------------~~~~~~~~~~~~~l----~~~-~----g~s~~~~~~~~~~~~~~~~~g~~~~g~l----~d  266 (390)
T PRK03545        217 VV-----------------TAHFTAYSYIEPFV----QQV-A----GLSENFATLLLLLFGGAGIIGSVLFSRL----GN  266 (390)
T ss_pred             HH-----------------HHHHHHHHHHHHHH----HHh-c----CCCccHHHHHHHHHHHHHHHHHHHHHHH----hh
Confidence            00                 00000000 00001    010 1    12222   22223333333333333332    22


Q ss_pred             hccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHH
Q 013020          268 KIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTE  347 (451)
Q Consensus       268 r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~e  347 (451)
                      |.       . .+++.++..+.++++......                     ..+.++++...++.+++.....+....
T Consensus       267 r~-------~-~~~~~~~~~~~~~~~~~l~~~---------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~  317 (390)
T PRK03545        267 RH-------P-SGFLLIAIALLLVCLLLLLPA---------------------ANSEWHLSVLSIFWGIAIMCIGLAMQV  317 (390)
T ss_pred             cc-------c-hhHHHHHHHHHHHHHHHHHHH---------------------hchHHHHHHHHHHHHHHHhcchHHHHH
Confidence            21       1 234556666555554433221                     123455666778889999888888778


Q ss_pred             HhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 013020          348 FYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACC  427 (451)
Q Consensus       348 f~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~  427 (451)
                      .+.+.+|+ .++.++|++.....+|..+|+.+.+.+.+.             .|   +...|+..+++.+++.++++...
T Consensus       318 ~~~~~~~~-~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~-------------~g---~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        318 KVLKLAPD-ATDVAMALFSGIFNIGIGAGALLGNQVSLH-------------LG---LSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------cC---hhHHHHHHHHHHHHHHHHHHHHc
Confidence            88888885 778999988877788888887776655421             11   34567778888877777765554


Q ss_pred             h
Q 013020          428 K  428 (451)
Q Consensus       428 ~  428 (451)
                      |
T Consensus       381 ~  381 (390)
T PRK03545        381 R  381 (390)
T ss_pred             c
Confidence            3

>PRK12382 putative transporter; Provisional

Probab=98.77  E-value=2.2e-06  Score=87.21  Aligned_cols=273  Identities=12%  Similarity=0.089  Sum_probs=155.0

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +...++++-.+.++|.+..-|...+.+.|.+++       ++|.++.+++..+.++|..+++.+.+++.+.+||+..+.+
T Consensus       111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~  183 (392)
T PRK12382        111 KFALLVVGRLILGFGESQLLTGALTWGLGLVGP-------KHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALT  183 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc-------cccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence            456677777888889888888888888887753       3577788899999999999999998998888999877665


Q ss_pred             HHHHHHHHHHHHHhcCccEeecCCCC---CchhHHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhhhhhh
Q 013020          112 PAVIMLLSALSFFLASPFYVKSKANT---SLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKA  188 (451)
Q Consensus       112 ~~i~~~i~li~f~~g~~~~~~~~p~~---~~l~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  188 (451)
                      ..+..++.+.   ..+ +.++.+++.   .++++..+.+   .+      +                     ....+-..
T Consensus       184 ~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~---~~------~---------------------~~~~~l~~  229 (392)
T PRK12382        184 TMVLPLLAWA---FNG-TVRKVPAHAGERPSLWSVVGLI---WK------P---------------------GLGLALQG  229 (392)
T ss_pred             HHHHHHHHHH---HHH-hccCCCCCcccCchHHHHHHHH---HH------h---------------------HHHHHHHH
Confidence            5443332222   111 111111111   1111111000   00      0                     00000000


Q ss_pred             hhhcCCCCCCCCCCCCCCCCCcchhHHHHHH-HHHHHHhhccCcCCCCccccCchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 013020          189 CMAKHPEQDLTPDGRASNPNSLCTVEQVEEL-KALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLAS  267 (451)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~w~l~~~~~v~~~-k~~~~~~~md~~~~~g~~ip~~~l~~~n~l~iii~~pl~~~~~~pl~~  267 (451)
                      ..                      ...+... ...+  .  +.    ++. +.........+..++..++..++    .+
T Consensus       230 ~~----------------------~~~~~~~~~~~~--~--~~----~~~-~~~~~~~~~~~~~~~~~~~~g~l----~~  274 (392)
T PRK12382        230 VG----------------------FAVIGTFVSLYF--A--SK----GWA-MAGFTLTAFGGAFVLMRVLFGWM----PD  274 (392)
T ss_pred             HH----------------------HhHHHHHHHHHH--H--hc----CCc-hhHHHHHHHHHHHHHHHHHHHHH----HH
Confidence            00                      0000000 0000  0  11    111 11122223333334444444443    23


Q ss_pred             hccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHH
Q 013020          268 KIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTE  347 (451)
Q Consensus       268 r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~e  347 (451)
                      |.       ...+-+.++..+.+++++...+.                      -+.++.+...++.++++....|....
T Consensus       275 r~-------g~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~  325 (392)
T PRK12382        275 RF-------GGVKVAIVSLLVETVGLLLLWLA----------------------PTAWVALAGAALTGAGCSLIFPALGV  325 (392)
T ss_pred             hc-------CCCeehHHHHHHHHHHHHHHHHc----------------------ccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            32       22233556666666666543322                      12345556778899999998888888


Q ss_pred             HhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 013020          348 FYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLA  425 (451)
Q Consensus       348 f~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~  425 (451)
                      .+.+.+|++.||..+|++.....+|+.+++.+.+.+.+..      +          +...|...+++.++..++.+.
T Consensus       326 ~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~------g----------~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        326 EVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF------G----------YPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------C----------chHHHHHHHHHHHHHHHHHHh
Confidence            8889999999999999999989999999888777654321      2          245566777777666665443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.75  E-value=4.6e-06  Score=85.00  Aligned_cols=277  Identities=12%  Similarity=0.028  Sum_probs=152.1

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHH
Q 013020           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP  112 (451)
Q Consensus        33 ~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~  112 (451)
                      ...++++..+.++|.|...++..+...+.+++       ++|.+..+++..+.++|..+++.+.+++.+..||+..|.++
T Consensus       112 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~  184 (399)
T PRK05122        112 LLLLLLGRLLLGIGESLAGTGSILWGIGRVGA-------LHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLI  184 (399)
T ss_pred             HHHHHHHHHHHHhhHHhhcchHHHHHHhhcCh-------hhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            44566777788899999999999988888764       34667888889999999999999888888889999888776


Q ss_pred             HHHHHHHHHHHHhcCccEeecCCCCCchhHHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhhhhhhhhhc
Q 013020          113 AVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAK  192 (451)
Q Consensus       113 ~i~~~i~li~f~~g~~~~~~~~p~~~~l~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~  192 (451)
                      ++..++.++..   ++ .++.++..++.....+.+....+.          ..                ...+.....  
T Consensus       185 ~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~----------~~----------------~~~~~~~~~--  232 (399)
T PRK05122        185 MLLALLGLLLA---RP-RPAVPPVKGERLPFRRVLGRVWPY----------GM----------------GLALASIGF--  232 (399)
T ss_pred             HHHHHHHHHHH---hc-CCCCCCCCccchhHHHHHHHHHHH----------HH----------------HHHHHHHHH--
Confidence            65443333221   11 111111111100000000000000          00                000000000  


Q ss_pred             CCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCcCCCCccccCchhhhhHHHHHHHHHHHHHHHHhhhhhhccCC
Q 013020          193 HPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGK  272 (451)
Q Consensus       193 ~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g~~ip~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~  272 (451)
                                           ......-..+ ..  +.    ++. ..........+..++..++..++    .+|.   
T Consensus       233 ---------------------~~~~~~~~~~-~~--~~----~~~-~~~~~~~~~~~~~~~~~~~~g~l----~~r~---  276 (399)
T PRK05122        233 ---------------------GTIATFITLY-YA--AR----GWD-GAALALTLFGVAFVGARLLFGNL----INRL---  276 (399)
T ss_pred             ---------------------HHHHHHHHHH-HH--Hc----ccc-cchHHHHHHHHHHHHHHHHHHHH----HHHh---
Confidence                                 0000000000 00  11    110 11122223333333333333332    3332   


Q ss_pred             CCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcc
Q 013020          273 PCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTE  352 (451)
Q Consensus       273 ~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~  352 (451)
                          ...+-+.++.++.+++++.....                      .+.++++...++.+++.....|.....+.+.
T Consensus       277 ----~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~  330 (399)
T PRK05122        277 ----GGLRVAIVSLLVEILGLLLLWLA----------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKR  330 (399)
T ss_pred             ----ccHHHHHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence                22223455666666665544322                      2344556667899999998888888888889


Q ss_pred             cCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 013020          353 LPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLAC  426 (451)
Q Consensus       353 aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~  426 (451)
                      .|++.+|..+|++.....+|..+++.+.+.+.+..      +          +...|+..+++.++..++.+..
T Consensus       331 ~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~------g----------~~~~~~~~~~~~~~~~~~~~~~  388 (399)
T PRK05122        331 VPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF------G----------YPSIFLAAALAALLGLALTWLL  388 (399)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------C----------HHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999888888888777665553210      1          3455666666666655544433

>PRK10054 putative transporter; Provisional

Probab=98.75  E-value=1.2e-06  Score=89.63  Aligned_cols=81  Identities=14%  Similarity=0.112  Sum_probs=62.5

Q ss_pred             hHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHHH
Q 013020           34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA  113 (451)
Q Consensus        34 ~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~~  113 (451)
                      ..+++...+++.+.+.+.|...+..+|.+++       ++|.+.+++.|...|+|..+++.+.+++.+ .+|+..|.+.+
T Consensus        97 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~  168 (395)
T PRK10054         97 TLVVLFFALINCAYSVFSTVLKAWFADNLSS-------TSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAA  168 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHH
Confidence            3344444455566666777788888887753       468889999999999999999999888774 79999999988


Q ss_pred             HHHHHHHHH
Q 013020          114 VIMLLSALS  122 (451)
Q Consensus       114 i~~~i~li~  122 (451)
                      +..+++++.
T Consensus       169 ~~~~i~~i~  177 (395)
T PRK10054        169 ICSAFPLVF  177 (395)
T ss_pred             HHHHHHHHH
Confidence            887777544

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.73  E-value=3.3e-06  Score=89.05  Aligned_cols=86  Identities=14%  Similarity=0.093  Sum_probs=69.7

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeee-ccCccchh
Q 013020           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD-NLGWKVGF  109 (451)
Q Consensus        31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~-~~g~~~~F  109 (451)
                      .+...+++...+.+++.+...+...++..|.+++       ++|.++..+.-++.++|.++++.+..++.+ ..||+..|
T Consensus       105 ~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~-------~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f  177 (491)
T PRK11010        105 TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPA-------EERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMY  177 (491)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHH
Confidence            3466677777788888999999999999998874       356777888889999999999988888887 57999999


Q ss_pred             hHHHHHHHHHHHHH
Q 013020          110 GVPAVIMLLSALSF  123 (451)
Q Consensus       110 ~i~~i~~~i~li~f  123 (451)
                      .+.++.+++..+..
T Consensus       178 ~i~a~l~ll~~l~~  191 (491)
T PRK11010        178 WLMAALLIPCIIAT  191 (491)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99887766665543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.71  E-value=1.1e-06  Score=89.50  Aligned_cols=273  Identities=10%  Similarity=0.048  Sum_probs=152.7

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +.+.++++..+.+.+.+..-|...++..+ ++        +++...+.+.....++|..+++.+.+++.+++||+..|.+
T Consensus        93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~~--------~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~  163 (382)
T TIGR00902        93 NAWLLFIAIGLFALFFSAGMPIGDALANT-WQ--------KQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAI  163 (382)
T ss_pred             hHHHHHHHHHHHHHHHccchhHHHHHHHH-HH--------HHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence            45667777777777777777777776533 22        2456678899999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHhcCccEeecCCCCCc---hhHHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhhhhhh
Q 013020          112 PAVIMLLSALSFFLASPFYVKSKANTSL---LPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKA  188 (451)
Q Consensus       112 ~~i~~~i~li~f~~g~~~~~~~~p~~~~---l~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  188 (451)
                      .++...+.++.+.. .+..   +|+++.   ..+..+-.....|+                          ..+..+-..
T Consensus       164 ~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~l~~--------------------------~~~~~~l~~  213 (382)
T TIGR00902       164 LTAGLAFMLIGFLI-KPTI---PPKDAIPEDESQGDSAFIALLKN--------------------------PMNLRFLAA  213 (382)
T ss_pred             HHHHHHHHHHHHHc-CCCC---CCCccccccccccchhHHHHHcC--------------------------hHHHHHHHH
Confidence            76654443333322 1111   111100   00000000000000                          000000000


Q ss_pred             hhhcCCCCCCCCCCCCCCCCCcchhHHHHH-HHHHHHHhhccCcCCCCccccCchh---hhhHHHHHHHHHHHHHHHHhh
Q 013020          189 CMAKHPEQDLTPDGRASNPNSLCTVEQVEE-LKALIKASSMDRHVTPNFEIPSGSF---NIFAILTLTIWIGLYDRAVLP  264 (451)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~w~l~~~~~v~~-~k~~~~~~~md~~~~~g~~ip~~~l---~~~n~l~iii~~pl~~~~~~p  264 (451)
                      .....                 ........ ...++    .|  .    ..++.+.   ..++.+..++..++.+++   
T Consensus       214 ~~l~~-----------------~~~~~~~~~~~~~l----~~--~----g~s~~~~g~l~~~~~~~~i~~~~~~~~l---  263 (382)
T TIGR00902       214 VCLIQ-----------------GAHAAYYGFSAIYW----QA--A----GISASATGLLWGIGVLAEIIIFAFSNKL---  263 (382)
T ss_pred             HHHHH-----------------HHHHHHHHHHHHHH----HH--C----CCCHhHHHHHHHHHHHHHHHHHHHhHHH---
Confidence            00000                 00000000 00011    11  1    1233332   333444444443443333   


Q ss_pred             hhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhh
Q 013020          265 LASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIG  344 (451)
Q Consensus       265 l~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~  344 (451)
                       .+|       .++.+-+.+|.++.++.+...++.                      .++++++..-+++++...+..+.
T Consensus       264 -~~r-------~g~~~~l~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~q~l~g~~~~~~~~~  313 (382)
T TIGR00902       264 -FQN-------CSARDLLLISAIACVGRWAIIGAI----------------------EAFPLIFLLQILHCGTFAVCHLA  313 (382)
T ss_pred             -Hhh-------CCHHHHHHHHHHHHHHHHHHHHhH----------------------hhHHHHHHHHHHHHHHHHHHHHH
Confidence             343       344444667888888777665433                      23455555559999999999999


Q ss_pred             hHHHhhcccCchhhhHHHHHHh-HHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 013020          345 QTEFYYTELPKSMSSIASTLSG-AGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFL  421 (451)
Q Consensus       345 g~ef~~~~aP~~~kg~~~g~~~-l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~  421 (451)
                      .+.++.++ |++.++..+|++. ...++|..+++.+++...+.             +  +  ...|+..+++++++.+
T Consensus       314 ~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~-------------~--g--~~~~~~~~~~~~~~~~  373 (382)
T TIGR00902       314 AMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT-------------L--G--AGTFVFMAIIAAAAFF  373 (382)
T ss_pred             HHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------c--c--HHHHHHHHHHHHHHHH
Confidence            99999988 9999999999975 45677777777777665421             1  1  2457778888776543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.71  E-value=3e-06  Score=86.26  Aligned_cols=84  Identities=14%  Similarity=0.085  Sum_probs=64.8

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +.+.++++..+.+++.+. -|...+...+++++       ++|....+++..+.++|.++++.+.+++.+..+|+..|.+
T Consensus       106 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  177 (408)
T PRK09874        106 NIWQFLILRALLGLLGGF-VPNANALIATQVPR-------NKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFI  177 (408)
T ss_pred             hHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCH-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            355666777777777554 46667777777653       3567888899999999999999999999888999999998


Q ss_pred             HHHHHHHHHHHH
Q 013020          112 PAVIMLLSALSF  123 (451)
Q Consensus       112 ~~i~~~i~li~f  123 (451)
                      .++..++..+..
T Consensus       178 ~~~~~~~~~~~~  189 (408)
T PRK09874        178 TASVLFLCFLVT  189 (408)
T ss_pred             HHHHHHHHHHHH
Confidence            887776665543

>PRK10504 putative transporter; Provisional

Probab=98.69  E-value=9.5e-06  Score=84.67  Aligned_cols=87  Identities=9%  Similarity=0.092  Sum_probs=71.9

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +...++++..+.++|.|..-|...+.+.|.+++       +++.+.+.++....++|..+++.+.+++.++.||++.|.+
T Consensus        97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~  169 (471)
T PRK10504         97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPR-------EQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLI  169 (471)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHH
Confidence            456677888899999999999988888887753       4577889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 013020          112 PAVIMLLSALSFFL  125 (451)
Q Consensus       112 ~~i~~~i~li~f~~  125 (451)
                      ......++.+....
T Consensus       170 ~~~~~~l~~~~~~~  183 (471)
T PRK10504        170 NIPVGIIGAIATLM  183 (471)
T ss_pred             HHHHHHHHHHHHHH
Confidence            87766666555443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.65  E-value=4e-06  Score=86.38  Aligned_cols=85  Identities=21%  Similarity=0.274  Sum_probs=71.0

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhh---heeeeccCccchh
Q 013020           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCI---VYIQDNLGWKVGF  109 (451)
Q Consensus        33 ~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~---~~i~~~~g~~~~F  109 (451)
                      .+.++++..+.++|.|..-+...++.+|.+++       ++|....++++.+.++|.++++.+.   ..+.+..+|++.|
T Consensus       127 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f  199 (481)
T TIGR00879       127 VEMLIVGRVLLGIGVGIASALVPMYLSEIAPK-------ALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL  199 (481)
T ss_pred             hHHHHHHHHHHHhhhhHHHhHHHHHHHccCCh-------hhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence            45788889999999999999999999998874       3577889999999999999999988   7777889999999


Q ss_pred             hHHHHHHHHHHHHHH
Q 013020          110 GVPAVIMLLSALSFF  124 (451)
Q Consensus       110 ~i~~i~~~i~li~f~  124 (451)
                      .+.++..++.++..+
T Consensus       200 ~~~~~~~~~~~~~~~  214 (481)
T TIGR00879       200 GLQLIPAGLLFLGLF  214 (481)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            997766666554443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.64  E-value=4.5e-07  Score=89.87  Aligned_cols=85  Identities=24%  Similarity=0.285  Sum_probs=76.4

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +.+.++++..+.++|.|...+...++..|.++++       +|...+++...+.++|..+++.+.+++.++.+|++.|.+
T Consensus        84 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~  156 (352)
T PF07690_consen   84 NFWLLLIARFLLGIGSGFFSPASNALIADWFPPE-------ERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLI  156 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHH
T ss_pred             hHHHHhhhccccccccccccccccccccccchhh-------hhhhccccccchhhhhhhcccchhhhhhhcccccccccc
Confidence            3457889999999999999999999999999862       578899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 013020          112 PAVIMLLSALSF  123 (451)
Q Consensus       112 ~~i~~~i~li~f  123 (451)
                      .++..+++.++.
T Consensus       157 ~~~~~~~~~il~  168 (352)
T PF07690_consen  157 SAILSLIAAILF  168 (352)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             ccchhhhhhhhH
Confidence            999988887753

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.63  E-value=1.3e-05  Score=85.06  Aligned_cols=267  Identities=15%  Similarity=0.069  Sum_probs=160.6

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhh
Q 013020           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG  110 (451)
Q Consensus        31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~  110 (451)
                      .+.+.+++...++++|.+++.|.-.+++.+..++       ++...+.++.-...|+.-++||.+++.+-...|-.+.|.
T Consensus       101 ~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~-------~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~  173 (524)
T PF05977_consen  101 LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPK-------EDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFL  173 (524)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            4567788888899999999999999999999875       357888899999999999999999999888889899999


Q ss_pred             HHHHHHHHHHHHHHhcCccEeecCCCCCchhHHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhhhhhhhh
Q 013020          111 VPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACM  190 (451)
Q Consensus       111 i~~i~~~i~li~f~~g~~~~~~~~p~~~~l~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~  190 (451)
                      +.+++.+++++.+..-++...   ++..+-.+..+-++...+--.. .+                    .....+-....
T Consensus       174 inalsfl~~i~~l~~~~~~~~---~~~~~~e~~~~~l~~G~ryv~~-~~--------------------~l~~~l~~~~~  229 (524)
T PF05977_consen  174 INALSFLISILALLRWKPPPP---PSSLPRERFFSALREGLRYVRS-SP--------------------PLRSVLLRSFL  229 (524)
T ss_pred             HHHHHHHHHHHHHHHcccccc---ccccchhhhhhhHHHHHHHHhc-ch--------------------HHHHHHHHHHH
Confidence            999988887666554333221   1111111122222222211000 00                    00001111111


Q ss_pred             hcCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCcCCCCccccCchhhhhHHHHHHHHHHHHHHHHhhhhhhcc
Q 013020          191 AKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIK  270 (451)
Q Consensus       191 ~~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g~~ip~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~  270 (451)
                      ....         ....|.+         --++..+.+        +..+..+..+...+  -..-+...++.+.++++ 
T Consensus       230 ~~l~---------~~a~~aL---------lPl~a~~~l--------~~~a~~yGll~a~~--gvGai~Gal~~~~l~~~-  280 (524)
T PF05977_consen  230 FNLF---------ASAVWAL---------LPLFARDVL--------GGGASGYGLLLAAF--GVGAILGALLLPRLRRR-  280 (524)
T ss_pred             HHHh---------hhHHHHh---------hhHHHHHHh--------CCcHHHHHHHHHHH--HHHHHHHHHHHHHhhcc-
Confidence            0000         0001110         000101111        12344444333322  23344444455544542 


Q ss_pred             CCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhh
Q 013020          271 GKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYY  350 (451)
Q Consensus       271 ~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~  350 (451)
                           .+.-+-+..+.++.+++++.+++.                      -+.+..++..++.|++-..........+-
T Consensus       281 -----~~~~~lv~~~~~~~a~~~~~lal~----------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q  333 (524)
T PF05977_consen  281 -----LSSRRLVLLASLLFALALLLLALS----------------------PSFWLALIALFLAGAAWIIANSSLNTLVQ  333 (524)
T ss_pred             -----cCcchhhHHHHHHHHHHHHHHhcc----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 333444566777777666655433                      23455667888999999999999889999


Q ss_pred             cccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          351 TELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       351 ~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      +.+|+.++|..++++......+..+|..+.+.+.
T Consensus       334 ~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la  367 (524)
T PF05977_consen  334 LSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLA  367 (524)
T ss_pred             HhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988766666666665555543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.63  E-value=3.1e-06  Score=98.20  Aligned_cols=282  Identities=10%  Similarity=-0.044  Sum_probs=156.7

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhh
Q 013020           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG  110 (451)
Q Consensus        31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~  110 (451)
                      .+.+.++++..+.++|.+++.|...+++.|.+++       +++..+.+++.++.++|.++|+.+++++....||++.|.
T Consensus       106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~-------~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~  178 (1140)
T PRK06814        106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNK-------DELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVA  178 (1140)
T ss_pred             hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCc-------cccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            3577889999999999999999999999999985       357889999999999999999999999999999999985


Q ss_pred             HHHHHHHHHHHHHHhcCccEeecCCC----CCchhHHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhhhh
Q 013020          111 VPAVIMLLSALSFFLASPFYVKSKAN----TSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLN  186 (451)
Q Consensus       111 i~~i~~~i~li~f~~g~~~~~~~~p~----~~~l~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  186 (451)
                      +.++..++++++.+.-.+ ....++.    .++.......+....+++                          .+..+.
T Consensus       179 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~  231 (1140)
T PRK06814        179 LLMGIAVLGWLASLFIPK-TGNAAPDLKIDRNIIRSTITLLKYAKADK--------------------------RIWLAI  231 (1140)
T ss_pred             HHHHHHHHHHHHHhhCCC-CCCCCCCCeeccchHHHHHHHHHHHhcCc--------------------------hHHHHH
Confidence            444444444333222111 1111111    111111111111111110                          000000


Q ss_pred             hhhhhcCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCcCCCCccccC---chhhhhHHHHHHHHHHHHHHHHh
Q 013020          187 KACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPS---GSFNIFAILTLTIWIGLYDRAVL  263 (451)
Q Consensus       187 ~a~~~~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g~~ip~---~~l~~~n~l~iii~~pl~~~~~~  263 (451)
                      .....               .|...  .....   .+ -..+...+    ..++   .++.+...+..++...+..++. 
T Consensus       232 ~~~~~---------------~~~~~--~~~~~---~~-p~~~~~~~----g~~~~~~g~~~~~~~~g~~ig~~~~g~l~-  285 (1140)
T PRK06814        232 LGISW---------------FWLVG--AVVLS---QL-PLLAKETL----GGDENVATLFLAVFSVGVAVGSFLASKLS-  285 (1140)
T ss_pred             HHHHH---------------HHHHH--HHHHH---Hh-HHHHHHHc----CCchHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            00000               00000  00000   00 00011011    1222   3344555555555555555542 


Q ss_pred             hhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhh
Q 013020          264 PLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMI  343 (451)
Q Consensus       264 pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p  343 (451)
                         +++       ...+.+.+|.++.+++.+.+++.-..  .......+..-..-....+.|++++.++++|++..+..+
T Consensus       286 ---~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  353 (1140)
T PRK06814        286 ---EGR-------ITLLYVPIGALLMGLFGLDLAFASSS--VPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIV  353 (1140)
T ss_pred             ---CCc-------eeeeeehHHHHHHHHHHHHHHhcccc--cccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHH
Confidence               221       11223455555555544433332000  000000000000000114556677888999999999999


Q ss_pred             hhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          344 GQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       344 ~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      ....++.+.+|++.+|.++|++.+...+|..+++.+...+.
T Consensus       354 ~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~  394 (1140)
T PRK06814        354 PLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ  394 (1140)
T ss_pred             HHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999989998888888776664

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.62  E-value=1.4e-05  Score=83.32  Aligned_cols=84  Identities=10%  Similarity=0.104  Sum_probs=69.8

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeec-cCccchhhH
Q 013020           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-LGWKVGFGV  111 (451)
Q Consensus        33 ~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~-~g~~~~F~i  111 (451)
                      ...+++.-.+.++|.|..-|......++.+++       ++|..+..+++.+.++|..+++.+++++.+. .||+..|.+
T Consensus       131 ~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i  203 (465)
T TIGR00894       131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPP-------KERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYV  203 (465)
T ss_pred             chHHHHHHHHHHHhcccchhhHHHHHHhcCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhh
Confidence            45577777888999999999999999988764       4688899999999999999999999999888 499999999


Q ss_pred             HHHHHHHHHHHH
Q 013020          112 PAVIMLLSALSF  123 (451)
Q Consensus       112 ~~i~~~i~li~f  123 (451)
                      .++..++..+.+
T Consensus       204 ~~~~~~~~~~~~  215 (465)
T TIGR00894       204 FGIVGCAWSLLW  215 (465)
T ss_pred             hhHHHHHHHHHH
Confidence            877665554433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.60  E-value=1.3e-06  Score=88.68  Aligned_cols=88  Identities=13%  Similarity=0.253  Sum_probs=75.7

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccC-ccchh
Q 013020           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGF  109 (451)
Q Consensus        31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g-~~~~F  109 (451)
                      .+.+.+.+.-.++++|.+..-|-.+++++|.|++       ++|.+.|.||||+|++|+.+|....+++.+.-+ |+++|
T Consensus       119 ~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~-------~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af  191 (493)
T KOG1330|consen  119 NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPD-------DKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAF  191 (493)
T ss_pred             HHHHHHHHHHHHhccchhhhcccchhHhhhcCcc-------hhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEE
Confidence            5667777788899999999999999999999986       478999999999999999999999999988877 99999


Q ss_pred             hHHHHHHHHHH-HHHHh
Q 013020          110 GVPAVIMLLSA-LSFFL  125 (451)
Q Consensus       110 ~i~~i~~~i~l-i~f~~  125 (451)
                      ...++.+++.. ++|++
T Consensus       192 ~~~avl~vi~~~L~~~f  208 (493)
T KOG1330|consen  192 RGSAVLGVIVGLLVFLF  208 (493)
T ss_pred             EeehHHHHHHHHHHHhh
Confidence            98877665554 44554

>TIGR00898 2A0119 cation transport protein

Probab=98.55  E-value=2.3e-05  Score=82.50  Aligned_cols=83  Identities=19%  Similarity=0.185  Sum_probs=64.7

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +...+++...+.++|.|+.-+...++.+|.+++       ++|.....++..+.++|.++++.+...+.+   |++.|.+
T Consensus       179 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~  248 (505)
T TIGR00898       179 NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPK-------KQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLA  248 (505)
T ss_pred             cHHHHHHHHHHHHhhccchHHHHHHHhheecCh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHH
Confidence            356677777888899999999999999998875       346667777888899999999877666654   9999998


Q ss_pred             HHHHHHHHHHHHH
Q 013020          112 PAVIMLLSALSFF  124 (451)
Q Consensus       112 ~~i~~~i~li~f~  124 (451)
                      .++..++..+..+
T Consensus       249 ~~i~~~~~~~~~~  261 (505)
T TIGR00898       249 VSLPTFLFFLLSW  261 (505)
T ss_pred             HHHHHHHHHHHHH
Confidence            8877666655443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.53  E-value=2.1e-05  Score=82.12  Aligned_cols=86  Identities=14%  Similarity=0.116  Sum_probs=72.8

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +...++++..+.++|.|...|...+++.|.+++       ++|..++.+++.+.++|..+++.+.+++.+++||++.|.+
T Consensus        89 ~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~  161 (485)
T TIGR00711        89 NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPP-------EKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLI  161 (485)
T ss_pred             CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhh
Confidence            456778888888999999999999999999864       4678899999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHH
Q 013020          112 PAVIMLLSALSFF  124 (451)
Q Consensus       112 ~~i~~~i~li~f~  124 (451)
                      .+...++.++..+
T Consensus       162 ~~~~~~~~~~~~~  174 (485)
T TIGR00711       162 NVPIGIIVVVVAF  174 (485)
T ss_pred             hhHHHHHHHHHHH
Confidence            7766555554433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.51  E-value=1.4e-05  Score=84.27  Aligned_cols=87  Identities=13%  Similarity=0.045  Sum_probs=71.8

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhh
Q 013020           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG  110 (451)
Q Consensus        31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~  110 (451)
                      .+...++++-.+.++|.|++.|...+.+.+.+.++      ++|..+++++....++|..++|.+.+++.++.||++.|.
T Consensus        92 ~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~------~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~  165 (495)
T PRK14995         92 PTASWLIATRALLAIGAAMIVPATLAGIRATFTEE------KQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFL  165 (495)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHH
Confidence            35677888888999999999888888887776432      468889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 013020          111 VPAVIMLLSALSF  123 (451)
Q Consensus       111 i~~i~~~i~li~f  123 (451)
                      +.....++.+++.
T Consensus       166 i~~~~~~~~~~l~  178 (495)
T PRK14995        166 INVPIVLVVMGLT  178 (495)
T ss_pred             HHHHHHHHHHHHH
Confidence            8766555554443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.50  E-value=3.6e-05  Score=77.41  Aligned_cols=87  Identities=17%  Similarity=0.148  Sum_probs=73.2

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +...++++..+.++|.|..-+...++..|.+++       ++|...+.+++...++|..+++.+.+++.++.+|+..|.+
T Consensus        92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~  164 (385)
T TIGR00710        92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPG-------EELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAF  164 (385)
T ss_pred             cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            456677788888999999999999999998863       4678899999999999999999999999889999999998


Q ss_pred             HHHHHHHHHHHHHh
Q 013020          112 PAVIMLLSALSFFL  125 (451)
Q Consensus       112 ~~i~~~i~li~f~~  125 (451)
                      .++..++..+..+.
T Consensus       165 ~~~~~~~~~~~~~~  178 (385)
T TIGR00710       165 LSLAGILLSALIFF  178 (385)
T ss_pred             HHHHHHHHHHHHHH
Confidence            87777666555443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.50  E-value=4e-05  Score=78.92  Aligned_cols=111  Identities=13%  Similarity=0.113  Sum_probs=71.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccc
Q 013020          243 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQM  322 (451)
Q Consensus       243 l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~  322 (451)
                      +..+..+..++..|+..++    .+|.++       .+-+.+|+++.+++++...+..                     -
T Consensus       262 ~~~~~~i~~ii~~~~~~~l----~~r~g~-------~~~~~~~~~~~~~~~~~~~~~~---------------------~  309 (437)
T TIGR00792       262 MGSIAIVAGLIGVLLFPRL----VKKFGR-------KILFAGGILLMVLGYLIFFFAG---------------------S  309 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHhCc-------HHHHHHHHHHHHHHHHHHHHcc---------------------h
Confidence            3344455555555655544    344321       2235566666666665543321                     1


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccC-------chhhhHHHHHHhHHHHHHHHHHHHHhhhhcc
Q 013020          323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELP-------KSMSSIASTLSGAGLSAANLVASLIMNAVDD  385 (451)
Q Consensus       323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP-------~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~  385 (451)
                      +.++.+...++.+++.....+...++..+.+|       ++.+|.++|++.+...+|..+++.+.+.+-+
T Consensus       310 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~  379 (437)
T TIGR00792       310 NLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG  379 (437)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23344556678889998888888888887765       6778999999999888888888887776543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.47  E-value=1.2e-05  Score=81.62  Aligned_cols=81  Identities=11%  Similarity=0.037  Sum_probs=61.6

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +.+.+++...+.+++.+...|...+...+. .        +++...+++..+..++|..+++.+.+++.+++||+..|.+
T Consensus        93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~--------~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~  163 (382)
T PRK11128         93 SFWLLFVAIGLFNLFFSPLVPLTDALANTW-Q--------KQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWI  163 (382)
T ss_pred             cHHHHHHHHHHHHHHHcccccHHHHHHHHH-H--------hhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence            456666777777888888888777776654 2        1345566777888899999999999999999999999988


Q ss_pred             HHHHHHHHHH
Q 013020          112 PAVIMLLSAL  121 (451)
Q Consensus       112 ~~i~~~i~li  121 (451)
                      .++..++..+
T Consensus       164 ~~~~~~~~~~  173 (382)
T PRK11128        164 LTAGVASMLL  173 (382)
T ss_pred             HHHHHHHHHH
Confidence            7765555544

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.46  E-value=1.7e-05  Score=83.25  Aligned_cols=80  Identities=18%  Similarity=0.225  Sum_probs=67.6

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +.+.++++..+.+++.|+..+...++..|.+++       ++|...+++++.+.++|.++++.+.+++.+++||++.|.+
T Consensus       107 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~  179 (496)
T PRK03893        107 GYWTLFIARLVIGMGMAGEYGSSATYVIESWPK-------HLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFI  179 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence            456778888888999999999999999998874       4677888999999999999999999999999999999987


Q ss_pred             HHHHHHH
Q 013020          112 PAVIMLL  118 (451)
Q Consensus       112 ~~i~~~i  118 (451)
                      .++..++
T Consensus       180 ~~~~~~~  186 (496)
T PRK03893        180 GILPIIF  186 (496)
T ss_pred             HHHHHHH
Confidence            6554443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.45  E-value=4.1e-05  Score=79.94  Aligned_cols=86  Identities=16%  Similarity=0.122  Sum_probs=67.2

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhee--------eec
Q 013020           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYI--------QDN  102 (451)
Q Consensus        31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i--------~~~  102 (451)
                      .....++++-.+.++|.|+.-|...++++|.+++       ++|.....++-.+..+|.++++.+..++        .++
T Consensus       118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~-------~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~  190 (479)
T PRK10077        118 GYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPA-------HIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNT  190 (479)
T ss_pred             hHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCCh-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccc
Confidence            3456677888999999999999999999999885       3567788888888999999887654433        246


Q ss_pred             cCccchhhHHHHHHHHHHHHH
Q 013020          103 LGWKVGFGVPAVIMLLSALSF  123 (451)
Q Consensus       103 ~g~~~~F~i~~i~~~i~li~f  123 (451)
                      .||++.|.+.++..++.++..
T Consensus       191 ~gWr~~f~~~~~~~~~~~~~~  211 (479)
T PRK10077        191 DGWRYMFASEAIPALLFLMLL  211 (479)
T ss_pred             CChHHHHHHHHHHHHHHHHHH
Confidence            799999998877766655443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.44  E-value=0.0001  Score=74.21  Aligned_cols=86  Identities=16%  Similarity=0.182  Sum_probs=71.4

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +...+++...+.+++.|...+...++..|.+++       ++|.+.+++++.+.++|..+++.+.+++.+..+|++.|.+
T Consensus        78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  150 (377)
T PRK11102         78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPK-------EEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWV  150 (377)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence            345677777888899999999999999998764       3578899999999999999999999999888999999998


Q ss_pred             HHHHHHHHHHHHH
Q 013020          112 PAVIMLLSALSFF  124 (451)
Q Consensus       112 ~~i~~~i~li~f~  124 (451)
                      .++..++..+...
T Consensus       151 ~~~~~~~~~~~~~  163 (377)
T PRK11102        151 LALAAILAAALVF  163 (377)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777666655443

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.44  E-value=6.3e-05  Score=75.49  Aligned_cols=87  Identities=16%  Similarity=0.180  Sum_probs=58.4

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHH
Q 013020           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP  112 (451)
Q Consensus        33 ~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~  112 (451)
                      ...+++.-.+.+.+.+..-|...++..+..+++ .    +.+.....+.+.+.++|..+++.+.+++.+..||++.|.+.
T Consensus        87 ~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~  161 (375)
T TIGR00899        87 YFLLLVLGVLLSSFASTANPQLFALAREHADRT-G----REAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTA  161 (375)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhc-c----hhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHH
Confidence            344444444455555556666666666654321 1    11222357788889999999999999998899999999998


Q ss_pred             HHHHHHHHHHHH
Q 013020          113 AVIMLLSALSFF  124 (451)
Q Consensus       113 ~i~~~i~li~f~  124 (451)
                      ++..++..+..+
T Consensus       162 ~~~~~~~~~~~~  173 (375)
T TIGR00899       162 ALAFVLCGVLVW  173 (375)
T ss_pred             HHHHHHHHHHHH
Confidence            887766655443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.44  E-value=7.6e-05  Score=77.28  Aligned_cols=80  Identities=10%  Similarity=0.157  Sum_probs=65.5

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHH
Q 013020           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP  112 (451)
Q Consensus        33 ~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~  112 (451)
                      ...+++...+.+++.|..-+...+.+.+.+++       ++|.....+++.+.++|..+++.+.+++.+.+||++.|.+.
T Consensus       111 ~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~-------~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~  183 (434)
T PRK11663        111 LWAFALLWVLNAFFQGWGWPVCAKLLTAWYSR-------TERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIA  183 (434)
T ss_pred             HHHHHHHHHHHHHHHHccchHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            44555555667788888888888999998864       46788999999999999999999999998899999999987


Q ss_pred             HHHHHHH
Q 013020          113 AVIMLLS  119 (451)
Q Consensus       113 ~i~~~i~  119 (451)
                      ++..++.
T Consensus       184 ~i~~~~~  190 (434)
T PRK11663        184 GIIAIVV  190 (434)
T ss_pred             HHHHHHH
Confidence            7655444

>TIGR00788 fbt folate/biopterin transporter

Probab=98.43  E-value=5e-06  Score=87.20  Aligned_cols=83  Identities=14%  Similarity=0.069  Sum_probs=68.5

Q ss_pred             HHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHHHHH
Q 013020           36 LYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVI  115 (451)
Q Consensus        36 ~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~~i~  115 (451)
                      ..+.+.+++++.+.......++..|+.+ +++    +......++.|.+.++|.++++.+.+++.+.++|+..|.+.++.
T Consensus       123 ~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~----~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l  197 (468)
T TIGR00788       123 AAAFIFLAALAKALYDVLVDSLYSERIR-ESP----SAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAAL  197 (468)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC----CcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence            3346788999999999999999999988 333    24455778999999999999999999999999999999998888


Q ss_pred             HHHHHHHH
Q 013020          116 MLLSALSF  123 (451)
Q Consensus       116 ~~i~li~f  123 (451)
                      .++..+..
T Consensus       198 ~ll~~~~~  205 (468)
T TIGR00788       198 LLLQLFVS  205 (468)
T ss_pred             HHHHHHHH
Confidence            77774433

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.42  E-value=7.5e-05  Score=76.38  Aligned_cols=85  Identities=20%  Similarity=0.155  Sum_probs=65.4

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeec-cCccchhh
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-LGWKVGFG  110 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~-~g~~~~F~  110 (451)
                      +.+.+++...+.++..+...|...++..+.+++       ++|.++..+..++.++|..+++.+..++.+. .||+..|.
T Consensus        93 ~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~-------~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~  165 (402)
T PRK11902         93 ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHP-------EERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYL  165 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-------hhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHH
Confidence            445555555566777888999999999998764       3577788888899999999998877777765 59999999


Q ss_pred             HHHHHHHHHHHHH
Q 013020          111 VPAVIMLLSALSF  123 (451)
Q Consensus       111 i~~i~~~i~li~f  123 (451)
                      +.++..++..+..
T Consensus       166 i~a~~~l~~~l~~  178 (402)
T PRK11902        166 LMAGLMLAGALTT  178 (402)
T ss_pred             HHHHHHHHHHHHH
Confidence            9887766655543

>TIGR00901 2A0125 AmpG-related permease

Probab=98.42  E-value=1.2e-05  Score=80.49  Aligned_cols=86  Identities=19%  Similarity=0.044  Sum_probs=67.6

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccC-------
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG-------  104 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g-------  104 (451)
                      +...+++...+.+++.+...+...+++.|.+++       ++|..+.++...+.++|.++++.+.+++..+.|       
T Consensus        82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~  154 (356)
T TIGR00901        82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSD-------EELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLIT  154 (356)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------hhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence            344455544566677788888889999998854       357888899999999999999988888877777       


Q ss_pred             -ccchhhHHHHHHHHHHHHHH
Q 013020          105 -WKVGFGVPAVIMLLSALSFF  124 (451)
Q Consensus       105 -~~~~F~i~~i~~~i~li~f~  124 (451)
                       |+..|.+.++..++++++.+
T Consensus       155 ~wr~~f~i~ai~~l~~~~~~~  175 (356)
T TIGR00901       155 LWGYIFFWTALLILPGLLVTL  175 (356)
T ss_pred             ccHHHHHHHHHHHHHHHHHHH
Confidence             99999999887777665543

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.36  E-value=7.8e-05  Score=76.54  Aligned_cols=79  Identities=15%  Similarity=0.231  Sum_probs=66.9

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +...++++-.+.++|.|..-+...++..|.+++       ++|..+.+++..+.++|.++++.+.+++.+.+||++.|.+
T Consensus       105 ~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i  177 (426)
T PRK12307        105 GVIMLTLSRFIVGMGMAGEYACASTYAVESWPK-------HLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV  177 (426)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCH-------hHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence            456788888899999999999999999998864       3577788899999999999999888998899999999998


Q ss_pred             HHHHHH
Q 013020          112 PAVIML  117 (451)
Q Consensus       112 ~~i~~~  117 (451)
                      +.+..+
T Consensus       178 ~~~~~~  183 (426)
T PRK12307        178 GLLPVL  183 (426)
T ss_pred             HHHHHH
Confidence            655443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.34  E-value=4.7e-05  Score=88.29  Aligned_cols=64  Identities=9%  Similarity=0.051  Sum_probs=55.5

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeec
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN  102 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~  102 (451)
                      ..+.+++...+.+++.|.+-|...++++|.+++       ++|..+++++..+.++|.++++.+.+++.+.
T Consensus       102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGK-------ENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCc-------ccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            367788888899999999999999999999875       3578899999999999999999988887655

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.34  E-value=0.00013  Score=75.13  Aligned_cols=84  Identities=14%  Similarity=0.102  Sum_probs=67.9

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +...++++..+.++|.|..-+.......|.|++       +++.+..+++..+.++|..+++.+.+++.++.||++.|.+
T Consensus       103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~  175 (413)
T PRK15403        103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQ-------TKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI  175 (413)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            456778888888888887666666777787764       3567789999999999999999999999888999999998


Q ss_pred             HHHHHHHHHHH
Q 013020          112 PAVIMLLSALS  122 (451)
Q Consensus       112 ~~i~~~i~li~  122 (451)
                      .++..+++++.
T Consensus       176 ~~~~~~i~~~~  186 (413)
T PRK15403        176 IAVMGLIAFVG  186 (413)
T ss_pred             HHHHHHHHHHH
Confidence            88777666554

>TIGR00895 2A0115 benzoate transport

Probab=98.34  E-value=4e-05  Score=77.08  Aligned_cols=84  Identities=20%  Similarity=0.174  Sum_probs=70.4

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +.+.++++..+.++|.|...+...++.+|.+++       ++|...++++..+.++|..+++.+.+++.++.||+..|.+
T Consensus       104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~  176 (398)
T TIGR00895       104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPK-------RFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYV  176 (398)
T ss_pred             chHHHHHHHHHHhcccccchhhHHHHHHHHcCH-------HhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhh
Confidence            456678888899999999999999999998864       3578889999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHH
Q 013020          112 PAVIMLLSALS  122 (451)
Q Consensus       112 ~~i~~~i~li~  122 (451)
                      .++..++..++
T Consensus       177 ~~~~~~~~~~~  187 (398)
T TIGR00895       177 GGIAPLLLLLL  187 (398)
T ss_pred             hhhHHHHHHHH
Confidence            86554444433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.31  E-value=6.3e-05  Score=74.97  Aligned_cols=84  Identities=19%  Similarity=0.132  Sum_probs=62.6

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +...++++..+.++|.|..-+...+...+.++        ++|.....++..+.++|.++++.+.+.+.+..||++.|.+
T Consensus        90 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~  161 (377)
T TIGR00890        90 SLAALYLTYGLASAGVGIAYGIALNTAVKWFP--------DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIY  161 (377)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC--------cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHH
Confidence            45667777778888888777777777666664        2467788999999999998766566666677899999998


Q ss_pred             HHHHHHHHHHHH
Q 013020          112 PAVIMLLSALSF  123 (451)
Q Consensus       112 ~~i~~~i~li~f  123 (451)
                      .++..++..+..
T Consensus       162 ~~~~~~~~~~~~  173 (377)
T TIGR00890       162 MGIIFLLVIVLG  173 (377)
T ss_pred             HHHHHHHHHHHH
Confidence            887666655443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.31  E-value=7e-05  Score=76.05  Aligned_cols=80  Identities=16%  Similarity=0.010  Sum_probs=63.3

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +...+.++-.+.++|.|.. ++..+..++.+++       ++|.+..+++..+.++|..+++.+.+++.+++||+..|.+
T Consensus        78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~-------~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~  149 (368)
T TIGR00903        78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIRE-------ERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIP  149 (368)
T ss_pred             cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence            5677888888889999864 4444555776653       4688899999999999999999999999999999999988


Q ss_pred             HHHHHHHH
Q 013020          112 PAVIMLLS  119 (451)
Q Consensus       112 ~~i~~~i~  119 (451)
                      .++.-++.
T Consensus       150 ~~~l~~~~  157 (368)
T TIGR00903       150 IAAVAAAG  157 (368)
T ss_pred             HHHHHHHH
Confidence            55544333

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.28  E-value=0.00021  Score=72.50  Aligned_cols=72  Identities=6%  Similarity=-0.091  Sum_probs=56.2

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhh
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG  110 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~  110 (451)
                      +...++++..+.++|.|.+.|...+...+.+.+       ++|.+.+++++.+.|+|..+++.+.+++.+...+...+.
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~  164 (381)
T PRK03633         93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTS-------RNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWV  164 (381)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHH
Confidence            456777888888899998888777777776643       357889999999999999999999998877654444443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.27  E-value=0.00034  Score=71.10  Aligned_cols=84  Identities=17%  Similarity=0.091  Sum_probs=67.9

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +...++++..+.++|.|..-+...++..|.+++       ++|.+.+++++...++|..+++.+.+++.+..||+..|.+
T Consensus        90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~  162 (392)
T PRK10473         90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDD-------RRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYT  162 (392)
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHH
Confidence            345566777778888888888888888888864       4678899999999999999999888888888999999998


Q ss_pred             HHHHHHHHHHH
Q 013020          112 PAVIMLLSALS  122 (451)
Q Consensus       112 ~~i~~~i~li~  122 (451)
                      .++..++..+.
T Consensus       163 ~~~~~~i~~~~  173 (392)
T PRK10473        163 MAAMGILVLLL  173 (392)
T ss_pred             HHHHHHHHHHH
Confidence            87766655544

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.25  E-value=0.00014  Score=76.23  Aligned_cols=327  Identities=10%  Similarity=0.061  Sum_probs=172.8

Q ss_pred             hHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhee--eec---------
Q 013020           34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYI--QDN---------  102 (451)
Q Consensus        34 ~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i--~~~---------  102 (451)
                      ..+.+++.+.-++.....+...++++|..++++.     +.+.++.|+.+.+|+|+.+++.+.++.  .+.         
T Consensus       115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~-----~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~  189 (477)
T TIGR01301       115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR-----RTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEAC  189 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccc
Confidence            4556666677778888888889999999986543     456899999999999999999877654  111         


Q ss_pred             ----cCccchhhHHHHHHHHHHHHHHhcCccEeecCCCC-----------CchhHHHHHHHHHHHhcCCCCCCcccchhh
Q 013020          103 ----LGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANT-----------SLLPGLTQVLVASFKNRRTKLPTQATEEMY  167 (451)
Q Consensus       103 ----~g~~~~F~i~~i~~~i~li~f~~g~~~~~~~~p~~-----------~~l~~~~~vl~~a~~~~~~~~~~~~~~~~~  167 (451)
                          .+++..|.++++.++++.++-...-|.++..+++.           ......++-+..++++    .|.    .++
T Consensus       190 ~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----mP~----~m~  261 (477)
T TIGR01301       190 GVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHGEEAFFGELFGAFKY----LPR----PVW  261 (477)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccchhhhHHHHHHHHHH----CCH----HHH
Confidence                15678999999988888777665444332110000           0000111111222221    110    000


Q ss_pred             ccCCCccccCCCCchhhhhhhhhhcCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCc---CCCCccccCchhh
Q 013020          168 HHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRH---VTPNFEIPSGSFN  244 (451)
Q Consensus       168 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~---~~~g~~ip~~~l~  244 (451)
                      .       +.....+.|+..-..                 | +|..+.+.+.  ++++  -|..   ...|.++ .+|-.
T Consensus       262 ~-------l~~vqffsW~a~f~~-----------------~-~y~T~~vg~~--v~~~--~~~~~~~y~~gvr~-G~~~l  311 (477)
T TIGR01301       262 I-------LLLVTCLNWIAWFPF-----------------I-LFDTDWMGRE--VYGG--SVNQGAKYDDGVRA-GAFGL  311 (477)
T ss_pred             H-------HHHHHHHHHHHHHHH-----------------H-HhccHHHHHH--HcCC--CCcchhHHHHHHHH-HHHHH
Confidence            0       000001122211110                 0 0111111100  0000  0000   0001111 12223


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhh-hHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccch
Q 013020          245 IFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRM-GIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMS  323 (451)
Q Consensus       245 ~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki-~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s  323 (451)
                      ..|.+...    +++.++.++.||.+       ..++. .++.++.++|++...++.....+..+.++. + ..-..+..
T Consensus       312 ~~~s~~~~----i~s~~l~~l~~~~g-------~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~-~-~~~~~~~~  378 (477)
T TIGR01301       312 MLNSVVLG----ITSIGMEKLCRGWG-------AGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGD-G-ESLPPPTG  378 (477)
T ss_pred             HHHHHHHH----HHHHHHHHHHHHhc-------cchhHHHHHHHHHHHHHHHHHHHHhhhhcccccccc-c-cccCcchh
Confidence            34444433    33333333344432       11233 688888888888877664211000000000 0 00001222


Q ss_pred             -HHHHHHHHHHHHHHHHHHhhhhHHHhhcccCc--hhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCC
Q 013020          324 -AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK--SMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNI  400 (451)
Q Consensus       324 -~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~--~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~l  400 (451)
                       .++.+..+.++|++=......=++++++..|+  +-.|.+||+...+..+...+.++..+.++..         +.+  
T Consensus       379 ~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~---------~g~--  447 (477)
T TIGR01301       379 IKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQL---------FGG--  447 (477)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH---------cCC--
Confidence             36677788999999999999999999999995  4559999999999999999988766665432         111  


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 013020          401 NKGHYDYYYWLLTALSMANFLYYLACCKAY  430 (451)
Q Consensus       401 n~~~~~~~f~~la~l~lv~~~~~~~~~~~y  430 (451)
                         +..+.+.+-++.++++++.-+..-+|-
T Consensus       448 ---~~~~~~~~~gv~~~~aa~~~~~~~~~~  474 (477)
T TIGR01301       448 ---GNLPAFVVGAVAAFVSGLLALILLPRP  474 (477)
T ss_pred             ---CCeeHHHHHHHHHHHHHHHHHHhCCCC
Confidence               123345555556666666555555443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.25  E-value=0.00054  Score=70.05  Aligned_cols=84  Identities=18%  Similarity=0.289  Sum_probs=71.4

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhh
Q 013020           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG  110 (451)
Q Consensus        31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~  110 (451)
                      .+.+.+++...+.+++.|..-|...++..|.+++       ++|..+..+++.+.|+|..+++.+.+++.+..||++.|.
T Consensus       106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-------~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~  178 (394)
T PRK10213        106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPP-------RTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFN  178 (394)
T ss_pred             ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence            4567788888899999999999999999998864       467889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 013020          111 VPAVIMLLSAL  121 (451)
Q Consensus       111 i~~i~~~i~li  121 (451)
                      +.++..++.++
T Consensus       179 ~~~~l~~~~~l  189 (394)
T PRK10213        179 AAAVMGVLCIF  189 (394)
T ss_pred             HHHHHHHHHHH
Confidence            87765554443

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.21  E-value=0.00011  Score=75.62  Aligned_cols=136  Identities=10%  Similarity=0.098  Sum_probs=83.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020          242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ  321 (451)
Q Consensus       242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~  321 (451)
                      ++..++.+..++..++..++    .+|.+       ..+-+.++.++.+++++..++.                      
T Consensus       266 ~~~~~~~~~~~~~~~~~g~l----~dr~g-------~~~~~~~~~~l~~~~~~l~~~~----------------------  312 (420)
T PRK09528        266 YLNSFQVFLEALIMFFAPFI----INRIG-------AKNALLLAGTIMAVRIIGSGFA----------------------  312 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHhC-------cchhhHHHHHHHHHHHHHHHhc----------------------
Confidence            34444555444555555544    34432       2223556666666665554432                      


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHH-HhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCC
Q 013020          322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL-SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNI  400 (451)
Q Consensus       322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~-~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~l  400 (451)
                      .++++++...++.+++.....+...+++.+..|++.++...+. +.....+|..+++.+.+...+..      +      
T Consensus       313 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~------G------  380 (420)
T PRK09528        313 TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI------G------  380 (420)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh------C------
Confidence            2356677778888988888888888999999999999887654 55556777777777665544311      2      


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHH
Q 013020          401 NKGHYDYYYWLLTALSMANFLYYLAC  426 (451)
Q Consensus       401 n~~~~~~~f~~la~l~lv~~~~~~~~  426 (451)
                          +...|..++++.++..++.+..
T Consensus       381 ----~~~~f~~~~~~~~i~~~~~~~~  402 (420)
T PRK09528        381 ----FQGTYLILGGIVLLFTLISVFT  402 (420)
T ss_pred             ----chHHHHHHHHHHHHHHHHHHHH
Confidence                2345666777766666555443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.21  E-value=0.0002  Score=74.05  Aligned_cols=308  Identities=15%  Similarity=0.112  Sum_probs=165.4

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhee----eecc---C
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYI----QDNL---G  104 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i----~~~~---g  104 (451)
                      ....+++...+..++...+.-+..+++.|..++.+      +|.+..++..+..++|.++...+.+.+    .+..   +
T Consensus       102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~------~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~  175 (428)
T PF13347_consen  102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD------ERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNG  175 (428)
T ss_pred             HHHHHHHHHHHHHHhhhhccCchhhcCccccccHh------hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchH
Confidence            33445666667788888899999999999876543      467788888888888887555444443    3221   5


Q ss_pred             ccchhhHHHHHHHHHHHHHHhcCccEeecCCCCCchhHHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhh
Q 013020          105 WKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRF  184 (451)
Q Consensus       105 ~~~~F~i~~i~~~i~li~f~~g~~~~~~~~p~~~~l~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (451)
                      |.+.+.+.++..++..++.....|.-..+.++..+.....+.++...++|                          .++.
T Consensus       176 ~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~~~~~~~~~~~nr--------------------------~~~~  229 (428)
T PF13347_consen  176 YRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKISLRDSLRSLFRNR--------------------------PFRI  229 (428)
T ss_pred             HHHHHHHHHHHHHHHhhhhhheeeeccccccccccccccccchhhhcccc--------------------------hHHH
Confidence            77777766666666655555544431011111111111111111111111                          0111


Q ss_pred             hhhhhhhcCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCcCCCCccccCchhhhhHHHHHHHHHHHHHHHHhh
Q 013020          185 LNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLP  264 (451)
Q Consensus       185 l~~a~~~~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g~~ip~~~l~~~n~l~iii~~pl~~~~~~p  264 (451)
                      +-.+.....            ..+.+..     ..-..+....+..      +=-.+.+.....+..++..|+..++   
T Consensus       230 l~~~~~~~~------------~~~~~~~-----~~~~y~~~~vl~~------~~~~~~~~~~~~~~~~v~~~~~~~l---  283 (428)
T PF13347_consen  230 LLLAFFLQW------------LAFALMN-----TFLPYYFTYVLGN------EGLISIFMLIFFVASIVGSPLWGRL---  283 (428)
T ss_pred             HHHHHHHHH------------hhhhhhh-----hHHHHHHHHHhcC------chhhHHHHHHHHHHHHHHHHHHHHH---
Confidence            110000000            0000000     0000000000110      1001222333344445555555444   


Q ss_pred             hhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhh
Q 013020          265 LASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIG  344 (451)
Q Consensus       265 l~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~  344 (451)
                       .+|.++       .+-+.+|.++.+++.+...+..                    +.+.+|.++..++.+++-....+.
T Consensus       284 -~~r~gk-------~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~i~~~l~gi~~~~~~~~  335 (428)
T PF13347_consen  284 -SKRFGK-------KKVYIIGLLLAALGFLLLFFLG--------------------PGSPWLVLILFILAGIGYGAFFVI  335 (428)
T ss_pred             -HHHccc-------eeehhhhHHHHHHHHHHHHHHH--------------------hhhHHHHHHHHHHhHhhhcccccc
Confidence             344322       2245677888887777766552                    256788888899999999999988


Q ss_pred             hHHHhhcccC-------chhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCC--CCCCcchhHHHHHHHHH
Q 013020          345 QTEFYYTELP-------KSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPS--NINKGHYDYYYWLLTAL  415 (451)
Q Consensus       345 g~ef~~~~aP-------~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~--~ln~~~~~~~f~~la~l  415 (451)
                      ..++..+..+       ++..|.++|++.+..-+|..+++.+...+-...      ++-++  +.++.........++.+
T Consensus       336 ~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~------Gy~~~~~~q~~~~~~~i~~~~~~~  409 (428)
T PF13347_consen  336 PWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALV------GYDANAAVQSASALSGIRILFSIV  409 (428)
T ss_pred             cccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHh------CcCCCcCcCCHHHHHHHHHHHHHH
Confidence            8888888776       466899999999999999988888777654332      22221  12222344444455555


Q ss_pred             HHHHHHHHHHHhhhcC
Q 013020          416 SMANFLYYLACCKAYG  431 (451)
Q Consensus       416 ~lv~~~~~~~~~~~y~  431 (451)
                      .++..++-.++.++|+
T Consensus       410 p~~~~~~~~i~~~~y~  425 (428)
T PF13347_consen  410 PAIFLLLAIIFMRFYP  425 (428)
T ss_pred             HHHHHHHHHHHHhhcc
Confidence            5555555556666664

>PRK09848 glucuronide transporter; Provisional

Probab=98.21  E-value=0.00016  Score=75.14  Aligned_cols=86  Identities=14%  Similarity=0.069  Sum_probs=64.1

Q ss_pred             chhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCch--
Q 013020          279 KLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS--  356 (451)
Q Consensus       279 ~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~--  356 (451)
                      .+-+.+|+++.+++++...+..                    ..+.++.+...++.++|+.+..+...++..+.+|++  
T Consensus       294 ~~~~~~g~~~~~i~~~~~~~~~--------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~  353 (448)
T PRK09848        294 KNTFLIGALLGTCGYLLFFWVS--------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEY  353 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC--------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            3446678777777765543220                    134555666778899999999999999998888754  


Q ss_pred             -----hhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          357 -----MSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       357 -----~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                           .+|.++|++.+..-+|..+++.+.+.+-
T Consensus       354 ~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l  386 (448)
T PRK09848        354 LTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL  386 (448)
T ss_pred             hhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 5799999999998888888887776543

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.21  E-value=0.00053  Score=70.00  Aligned_cols=84  Identities=10%  Similarity=0.081  Sum_probs=64.7

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeecc-Cccchhh
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL-GWKVGFG  110 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~-g~~~~F~  110 (451)
                      +...++++-.+.++|.|..-+.......+.|++        +|.....++..+.++|..+++.+.+++.++. +|+..|.
T Consensus        96 ~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~--------~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~  167 (393)
T PRK09705         96 QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQ--------RTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLA  167 (393)
T ss_pred             chHHHHHHHHHHHhHHHHHhhhhhHHHHHHccc--------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            455678888899999999999999998888752        3567888888899999999999888888775 8988877


Q ss_pred             HHHHHHHHHHHHH
Q 013020          111 VPAVIMLLSALSF  123 (451)
Q Consensus       111 i~~i~~~i~li~f  123 (451)
                      +-++..++.+..+
T Consensus       168 ~~~~~~~~~~~~~  180 (393)
T PRK09705        168 WWALPAVVALFAW  180 (393)
T ss_pred             HHHHHHHHHHHHH
Confidence            6554444444333

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.19  E-value=0.0006  Score=69.53  Aligned_cols=70  Identities=17%  Similarity=0.231  Sum_probs=48.6

Q ss_pred             cccccchhhhcccCCCCCCCcchhhHHHHH-HHHHHHHHHHHHHHhhhhheeeeccCccchhhHHHHHHHHHHHHHH
Q 013020           49 GIRSSSLAFGAEQLDKGDGTKSKGALQSYF-SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFF  124 (451)
Q Consensus        49 ~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F-~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~~i~~~i~li~f~  124 (451)
                      ..-|...++..|..+++ .     +....+ ++...+.++|..+++.+.+++.++.||+..|.+.++..++..+..+
T Consensus       121 ~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~  191 (393)
T PRK15011        121 TANPQMFALAREHADKT-G-----REAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVW  191 (393)
T ss_pred             hhHHHHHHHHHHHhhhc-c-----chHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            44555556565544321 1     122234 5888899999999999999999999999999988776655554433

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.19  E-value=0.00082  Score=68.69  Aligned_cols=77  Identities=22%  Similarity=0.265  Sum_probs=62.3

Q ss_pred             HHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHHHHHH
Q 013020           37 YFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIM  116 (451)
Q Consensus        37 ~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~~i~~  116 (451)
                      ++...+.++|.|++-|...+++.|.+++       ++|.++.++.....++|..+||.+++++.+. .|+..|.+.+...
T Consensus        92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~-------~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~  163 (393)
T PRK11195         92 LLAYGLVGIGAAAYSPAKYGILTELLPG-------EKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIY  163 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            4556678999999999999999999985       4688999999999999999999998888764 3777777766555


Q ss_pred             HHHHH
Q 013020          117 LLSAL  121 (451)
Q Consensus       117 ~i~li  121 (451)
                      +++.+
T Consensus       164 ~~~~~  168 (393)
T PRK11195        164 LLAAL  168 (393)
T ss_pred             HHHHH
Confidence            55443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.19  E-value=0.00033  Score=71.09  Aligned_cols=84  Identities=11%  Similarity=0.158  Sum_probs=67.4

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +.+.++++..+.++|.|..-+....+..+.+++       ++|.+.+.++..+.++|..+++.+.+++.+..||++.|.+
T Consensus        90 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~  162 (382)
T PRK10091         90 SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKP-------GKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL  162 (382)
T ss_pred             cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCh-------HHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence            467778888888888888877777777776653       3566788888899999999999888999889999999999


Q ss_pred             HHHHHHHHHHH
Q 013020          112 PAVIMLLSALS  122 (451)
Q Consensus       112 ~~i~~~i~li~  122 (451)
                      .++..++..+.
T Consensus       163 ~~~~~~~~~~~  173 (382)
T PRK10091        163 IAVFNIAVLAS  173 (382)
T ss_pred             HHHHHHHHHHH
Confidence            88766655543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.17  E-value=0.0011  Score=67.27  Aligned_cols=83  Identities=14%  Similarity=0.108  Sum_probs=64.8

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +...++++..+.++|.|...+....+..|.+++       +++....+++..+.++|.++++.+.+++.++.||+..|.+
T Consensus        95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~  167 (394)
T PRK11652         95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEG-------TQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLF  167 (394)
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence            456677777788888887777777777777653       3567778888899999999999999999888999999998


Q ss_pred             HHHHHHHHHH
Q 013020          112 PAVIMLLSAL  121 (451)
Q Consensus       112 ~~i~~~i~li  121 (451)
                      .++..++..+
T Consensus       168 ~~~~~~~~~~  177 (394)
T PRK11652        168 LLLLGAGVTF  177 (394)
T ss_pred             HHHHHHHHHH
Confidence            7765554433

>TIGR00889 2A0110 nucleoside transporter

Probab=98.16  E-value=0.00026  Score=73.11  Aligned_cols=94  Identities=13%  Similarity=0.146  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHh-HHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCc
Q 013020          325 MWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSG-AGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKG  403 (451)
Q Consensus       325 ~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~-l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~  403 (451)
                      +.++...++.++++.+..+....++.+.+|++.||.++|+.. ...++|..+++.+.+...+.....+..+         
T Consensus       309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~---------  379 (418)
T TIGR00889       309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFD---------  379 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCc---------
Confidence            334556789999999999999999999999999999999996 5678888888887766543210000001         


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhh
Q 013020          404 HYDYYYWLLTALSMANFLYYLACCK  428 (451)
Q Consensus       404 ~~~~~f~~la~l~lv~~~~~~~~~~  428 (451)
                       ++.-|...+++.++..++++.+.+
T Consensus       380 -~~~~f~~~~~~~~i~~~l~~~~~~  403 (418)
T TIGR00889       380 -WQTMWLFFAGYIAILAVLFMIFFK  403 (418)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHhC
Confidence             344566677777766666655554

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK03699 putative transporter; Provisional

Probab=98.15  E-value=0.0012  Score=67.35  Aligned_cols=86  Identities=12%  Similarity=0.117  Sum_probs=66.2

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhee-eeccCccchhh
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYI-QDNLGWKVGFG  110 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i-~~~~g~~~~F~  110 (451)
                      +...+++...+.+++.|...+...+...+.+++       ++|....+..+...++|+.+++.+.+++ .++.||++.|.
T Consensus        94 ~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~  166 (394)
T PRK03699         94 SLALFSIAMFVLGVVSGITMSIGTFLITHVYEG-------KQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYA  166 (394)
T ss_pred             hHHHHHHHHHHHHHhhHhhccchhHHhhhhccc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            456677788888899999899999999998853       2466677777888899999998887765 45689999999


Q ss_pred             HHHHHHHHHHHHHH
Q 013020          111 VPAVIMLLSALSFF  124 (451)
Q Consensus       111 i~~i~~~i~li~f~  124 (451)
                      +.++..++..+..+
T Consensus       167 ~~~~~~~~~~~~~~  180 (394)
T PRK03699        167 CIGLVYVAIFILTL  180 (394)
T ss_pred             HHHHHHHHHHHHHH
Confidence            87776665554433

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.11  E-value=3.1e-05  Score=84.09  Aligned_cols=229  Identities=7%  Similarity=-0.092  Sum_probs=155.2

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchh-
Q 013020           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGF-  109 (451)
Q Consensus        31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F-  109 (451)
                      .+.+...++++.++++.+|.+++.+++.++|.+..++    +++++.+++|||..+.+.+.+.+..........+.-+| 
T Consensus        80 ~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~----~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg  155 (654)
T TIGR00926        80 GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE----RQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFG  155 (654)
T ss_pred             ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            3466778899999999999999999999999998776    77888999999999999998765444444333454333 


Q ss_pred             ------hHHHHHHHHHHHHHHhcCccEeecCCCCCchhHHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchh
Q 013020          110 ------GVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLR  183 (451)
Q Consensus       110 ------~i~~i~~~i~li~f~~g~~~~~~~~p~~~~l~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (451)
                            +..++.+++.++.++.....++..++.+.+.+.+.+++...+...+                            
T Consensus       156 ~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~----------------------------  207 (654)
T TIGR00926       156 CQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALR----------------------------  207 (654)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHH----------------------------
Confidence                  3778888888888999888787767765554445555433322210                            


Q ss_pred             hhhhhhhhcCCCCCCCCCCCCCCCCCcch--hHHHHHHHHHHHHhhc-------------------------cCcCCCCc
Q 013020          184 FLNKACMAKHPEQDLTPDGRASNPNSLCT--VEQVEELKALIKASSM-------------------------DRHVTPNF  236 (451)
Q Consensus       184 ~l~~a~~~~~~~~~~~~~~~~~~~w~l~~--~~~v~~~k~~~~~~~m-------------------------d~~~~~g~  236 (451)
                        .+....  .       ......|..+.  ...+++++...+-..+                         ++..+ .+
T Consensus       208 --~~~~~~--~-------~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~-~l  275 (654)
T TIGR00926       208 --KRFSTR--S-------EHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDG-DV  275 (654)
T ss_pred             --HhhccC--C-------cccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcC-cc
Confidence              000000  0       00011222111  1112334443222221                         11111 23


Q ss_pred             cccCchhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHh
Q 013020          237 EIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSI  306 (451)
Q Consensus       237 ~ip~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~  306 (451)
                      ...+...+.++++-+++++|+...+.+|++++..++   -++++++.-+.+..+++.+.+++++..+...
T Consensus       276 ~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~ve~~~  342 (654)
T TIGR00926       276 GGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAALVQLKV  342 (654)
T ss_pred             CCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567889999999999999999999999998654   5789999999999999999999999877665

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.10  E-value=0.00016  Score=75.92  Aligned_cols=83  Identities=8%  Similarity=0.080  Sum_probs=54.7

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheee----e-----c
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ----D-----N  102 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~----~-----~  102 (451)
                      +...+++...+.++|.|..-+ ....+++.+++       ++|..+..+.+...|+|+.+++.+.+.+.    +     .
T Consensus       123 s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~-------~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~  194 (476)
T PLN00028        123 SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNG-------KIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSF  194 (476)
T ss_pred             CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcCh-------hheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence            345566666677777776533 34456777753       35677888888788888887765554432    1     2


Q ss_pred             cCccchhhHHHHHHHHHHHH
Q 013020          103 LGWKVGFGVPAVIMLLSALS  122 (451)
Q Consensus       103 ~g~~~~F~i~~i~~~i~li~  122 (451)
                      .||++.|.+.++..++..+.
T Consensus       195 ~gWr~~f~i~g~l~l~~~l~  214 (476)
T PLN00028        195 TAWRIAFFVPGLLHIIMGIL  214 (476)
T ss_pred             hhhHHHHHHHHHHHHHHHHH
Confidence            58999999988766555443

>PRK11043 putative transporter; Provisional

Probab=98.09  E-value=0.00075  Score=68.78  Aligned_cols=85  Identities=16%  Similarity=0.151  Sum_probs=67.8

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +...++++..+.++|.|...+...++..|.+++       +++.+.++......++|..+++.+.+++.+++||+..|.+
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~  165 (401)
T PRK11043         93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPA-------QKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFAT  165 (401)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            456667777777888887777778888888764       3567788888889999999999999999999999999998


Q ss_pred             HHHHHHHHHHHH
Q 013020          112 PAVIMLLSALSF  123 (451)
Q Consensus       112 ~~i~~~i~li~f  123 (451)
                      .++..++..+..
T Consensus       166 ~~~~~~~~~~~~  177 (401)
T PRK11043        166 LFAITLLLILPT  177 (401)
T ss_pred             HHHHHHHHHHHH
Confidence            877666665543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.09  E-value=0.0016  Score=67.89  Aligned_cols=83  Identities=11%  Similarity=0.051  Sum_probs=60.5

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHH-HHHhhhhheeeeccCccchhh
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASS-IVAVTCIVYIQDNLGWKVGFG  110 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa-~i~~~~~~~i~~~~g~~~~F~  110 (451)
                      ....+++...+.+++.|...|.......+.+++       ++|..+.++++.+.++|. +++++....+....||+++|.
T Consensus       119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~  191 (452)
T PRK11273        119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALY  191 (452)
T ss_pred             cHHHHHHHHHHHHHHHhccchHHHHHHHHhCCh-------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHH
Confidence            355667777788888888888888888887764       357889999999999986 556654333333459999999


Q ss_pred             HHHHHHHHHHH
Q 013020          111 VPAVIMLLSAL  121 (451)
Q Consensus       111 i~~i~~~i~li  121 (451)
                      +.++..++..+
T Consensus       192 i~~~~~~~~~~  202 (452)
T PRK11273        192 MPAFAAILVAL  202 (452)
T ss_pred             HHHHHHHHHHH
Confidence            98776655433

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.09  E-value=9.4e-05  Score=77.28  Aligned_cols=308  Identities=12%  Similarity=0.114  Sum_probs=162.9

Q ss_pred             HHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeec-cCccchhhHHH
Q 013020           35 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-LGWKVGFGVPA  113 (451)
Q Consensus        35 ~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~-~g~~~~F~i~~  113 (451)
                      .+.+.-.+-+++.|..-|++..+.+.=.+.       ++|..+.++.|-+..+|.+++.-+++++-++ .||...|.+-+
T Consensus       130 ~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~-------~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g  202 (466)
T KOG2532|consen  130 LLLVLRFLQGLGQGVLFPAIGSILAKWAPP-------NERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFG  202 (466)
T ss_pred             hhHHHHHHhHHHHhHHHhhhhceeeeECCH-------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHH
Confidence            445666777888888888888888866553       4689999999999999999998889999888 99999999877


Q ss_pred             HHHHHHHHHHHhcCccEeecCCCCCch-hH-HHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhhh-hhhhh
Q 013020          114 VIMLLSALSFFLASPFYVKSKANTSLL-PG-LTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFL-NKACM  190 (451)
Q Consensus       114 i~~~i~li~f~~g~~~~~~~~p~~~~l-~~-~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~a~~  190 (451)
                      +.-++-.++++..   |.+ .|+..|. +. -.+.+   .+++......+          . ..+++...+.-. -.|..
T Consensus       203 ~~g~i~~~~w~~~---~~d-~P~~h~~is~~El~~I---~~~k~~~~~~~----------~-~~vP~~~i~ts~~vwai~  264 (466)
T KOG2532|consen  203 IVGLIWFILWFLF---YSD-SPSKHPNISEKELKYI---EKGKSEAHVKK----------K-PPVPYKAILTSPPVWAIW  264 (466)
T ss_pred             HHHHHHHHHHHHH---hcC-CcccCCCCCHHHHHHH---HhcccccccCC----------C-CCCCHHHHHcCHHHHHHH
Confidence            6555555544431   222 3333331 11 11111   11111000000          0 000110000000 00000


Q ss_pred             hcCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCcCCCCccccC-chhhhhHHHHHHHHHHHHHHHHhhhhhhc
Q 013020          191 AKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPS-GSFNIFAILTLTIWIGLYDRAVLPLASKI  269 (451)
Q Consensus       191 ~~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g~~ip~-~~l~~~n~l~iii~~pl~~~~~~pl~~r~  269 (451)
                      +..          ....|..+..  ....-     ..|+.-+  ++++.. .++.++..+...+...+...+-..+.+| 
T Consensus       265 ~~~----------f~~~~~~~~l--~~y~P-----tY~~~VL--~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~-  324 (466)
T KOG2532|consen  265 ISA----------FGGNWGFYLL--LTYLP-----TYLKEVL--GFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR-  324 (466)
T ss_pred             HHH----------HHHHHHHHHH--HHHhh-----HHHHHHh--CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence            000          0011111100  00000     1122111  344433 3444555555444444444444443333 


Q ss_pred             cCCCCCCCcchhhh--HhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHH
Q 013020          270 KGKPCQLSLKLRMG--IGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTE  347 (451)
Q Consensus       270 ~~~~~~~s~~~ki~--iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~e  347 (451)
                      ...   .+..+|+.  ++....+++++++++..        +            -+. |.  ..++++++..+..-...-
T Consensus       325 ~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~--------~------------~~~-~~--a~~~l~~~~~~~g~~~~G  378 (466)
T KOG2532|consen  325 ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTS--------D------------EHR-LL--AVILLTIAIGLSGFNISG  378 (466)
T ss_pred             cCc---hHhHHHHHHhHHHHHHHHHHHeeeecC--------C------------Ccc-hH--HHHHHHHHHHHcccchhh
Confidence            222   35556664  45555555555554442        0            011 12  234555555555444444


Q ss_pred             Hhhc--c-cCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 013020          348 FYYT--E-LPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYL  424 (451)
Q Consensus       348 f~~~--~-aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~  424 (451)
                      +.-.  . || +.-++.||+.....+++..+++.+++.+-. .  ++-++|          .+.|++.+++.++..++|.
T Consensus       379 f~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~--~t~~eW----------~~VF~i~a~i~~~~~i~f~  444 (466)
T KOG2532|consen  379 FYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVT-D--NTREEW----------RIVFLIAAGILIVGNIIFL  444 (466)
T ss_pred             hHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeC-C--CCHHHH----------HHHHHHHHHHHHHhchhee
Confidence            4433  3 54 566799999999999999999998877642 1  011244          5788899999999998887


Q ss_pred             HHh
Q 013020          425 ACC  427 (451)
Q Consensus       425 ~~~  427 (451)
                      +.+
T Consensus       445 ~f~  447 (466)
T KOG2532|consen  445 FFG  447 (466)
T ss_pred             Eee
Confidence            776

>PRK09669 putative symporter YagG; Provisional

Probab=98.08  E-value=0.00095  Score=69.28  Aligned_cols=62  Identities=3%  Similarity=0.008  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHhhcccC-------chhhhHHHHHHhHHHHHHHHHHHHHhhhhcc
Q 013020          324 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELP-------KSMSSIASTLSGAGLSAANLVASLIMNAVDD  385 (451)
Q Consensus       324 ~~wli~~y~l~~igEl~~~p~g~ef~~~~aP-------~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~  385 (451)
                      .++++...++.++++....+...+++.+.++       ++..|...|++.+...+|..+++.+.+.+-+
T Consensus       319 ~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~  387 (444)
T PRK09669        319 VWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA  387 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445556688999999999999999998876       5567889999988888888777777665543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.04  E-value=0.0012  Score=72.90  Aligned_cols=85  Identities=21%  Similarity=0.189  Sum_probs=64.3

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeee----------
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD----------  101 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~----------  101 (451)
                      +.+.++++..+.++|.|+.-|...+++++.++.       ++|...+++...+..+|.++++.++.++..          
T Consensus       254 s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~-------~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~  326 (742)
T TIGR01299       254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQ-------EKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGS  326 (742)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccc
Confidence            456788888999999999999999999998864       457778888888888998888765433322          


Q ss_pred             ---ccCccchhhHHHHHHHHHHHHH
Q 013020          102 ---NLGWKVGFGVPAVIMLLSALSF  123 (451)
Q Consensus       102 ---~~g~~~~F~i~~i~~~i~li~f  123 (451)
                         ..+|++.|.+.++..++.++.+
T Consensus       327 ~~~~~gWR~l~~i~~lp~ll~ll~~  351 (742)
T TIGR01299       327 AYQFHSWRVFVIVCAFPCVFAIGAL  351 (742)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHH
Confidence               2468888888777666665543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.02  E-value=0.00011  Score=73.41  Aligned_cols=86  Identities=14%  Similarity=0.164  Sum_probs=70.0

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHh-hhhheeeeccCccchhh
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAV-TCIVYIQDNLGWKVGFG  110 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~-~~~~~i~~~~g~~~~F~  110 (451)
                      +.+.++++..+.++|.|..-|...++..+.+++       ++|...++++..+.++|..+++ ++...+.+..+|++.|.
T Consensus        82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  154 (379)
T TIGR00881        82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSR-------SERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFI  154 (379)
T ss_pred             hHHHHHHHHHHHHhhccccCCchHHHHHHhcCH-------hhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHH
Confidence            567778888889999999999999999999875       3567788899999999999999 56677777889999999


Q ss_pred             HHHHHHHHHHHHHH
Q 013020          111 VPAVIMLLSALSFF  124 (451)
Q Consensus       111 i~~i~~~i~li~f~  124 (451)
                      +.++..++..++.+
T Consensus       155 ~~~~~~~~~~~~~~  168 (379)
T TIGR00881       155 VPGIIAIIVSLICF  168 (379)
T ss_pred             HHHHHHHHHHHHHh
Confidence            88776665544443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.01  E-value=0.0014  Score=66.54  Aligned_cols=91  Identities=21%  Similarity=0.323  Sum_probs=77.5

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhh
Q 013020           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG  110 (451)
Q Consensus        31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~  110 (451)
                      .+...+.++-.+.++..|.|-+-..+..++..++       +||.++-.+.+.+..+.-.+|.-+..++.+.+||+..|.
T Consensus        99 p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp-------~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~  171 (394)
T COG2814          99 PSFAVLLLARALAGLAHGVFWSIAAALAARLVPP-------GKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFL  171 (394)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------cchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHH
Confidence            4677888999999999999999999999999876       368889999999999999999888999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCc
Q 013020          111 VPAVIMLLSALSFFLASP  128 (451)
Q Consensus       111 i~~i~~~i~li~f~~g~~  128 (451)
                      +-++.-++.++..+..-+
T Consensus       172 ~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         172 AIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHHHhCC
Confidence            877766666665554444

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.00  E-value=0.001  Score=66.62  Aligned_cols=81  Identities=22%  Similarity=0.286  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheee--------eccCcc
Q 013020           35 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ--------DNLGWK  106 (451)
Q Consensus        35 ~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~--------~~~g~~  106 (451)
                      .++++..+.++|.|..-+...++.+|.+++       ++|.....++..+.++|.++++.+...+.        +.++|+
T Consensus        98 ~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~  170 (394)
T TIGR00883        98 LLLLARLIQGFSLGGEWGGAALYLAEYAPP-------GKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWR  170 (394)
T ss_pred             HHHHHHHHHHhhccccccccHHHhhhcCCc-------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchH
Confidence            467777888899999999999999988764       35677888999999999999987655443        357899


Q ss_pred             chhhHHHHHHHHHHHH
Q 013020          107 VGFGVPAVIMLLSALS  122 (451)
Q Consensus       107 ~~F~i~~i~~~i~li~  122 (451)
                      +.|.+.++..+++..+
T Consensus       171 ~~~~~~~~~~~~~~~~  186 (394)
T TIGR00883       171 IPFLVSAVLVLIGLYL  186 (394)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999877766665443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.99  E-value=0.0016  Score=68.34  Aligned_cols=62  Identities=15%  Similarity=0.089  Sum_probs=48.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccC-------chhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELP-------KSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP-------~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      +.++++...++.++++....+...+++.+.+|       ++..|.+.|.+.+..-+|..+++.+.+.+-
T Consensus       323 ~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l  391 (473)
T PRK10429        323 NALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL  391 (473)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566688999999999999999999877       566788999999988888877777666543

>PRK09952 shikimate transporter; Provisional

Probab=97.93  E-value=0.0021  Score=66.74  Aligned_cols=77  Identities=18%  Similarity=0.231  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheee--------eccCcc
Q 013020           35 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ--------DNLGWK  106 (451)
Q Consensus        35 ~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~--------~~~g~~  106 (451)
                      .+.+.-.+.++|.|+.-|....+..+.+++       ++|....+....+.++|.+++..+..++.        +++||+
T Consensus       127 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~-------~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr  199 (438)
T PRK09952        127 LLVTLRAIQGFAVGGEWGGAALLAVESAPK-------NKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWR  199 (438)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHhCCC-------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChH
Confidence            466667788999999999999999887764       24555667778888889888866555443        357999


Q ss_pred             chhhHHHHHHHH
Q 013020          107 VGFGVPAVIMLL  118 (451)
Q Consensus       107 ~~F~i~~i~~~i  118 (451)
                      +.|.+.++..++
T Consensus       200 ~~f~~~~~~~l~  211 (438)
T PRK09952        200 IPFLFSIVLVLI  211 (438)
T ss_pred             HHHHHHHHHHHH
Confidence            999988765444

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=97.93  E-value=0.0028  Score=66.78  Aligned_cols=76  Identities=17%  Similarity=0.196  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhe----ee----eccCcc
Q 013020           35 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVY----IQ----DNLGWK  106 (451)
Q Consensus        35 ~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~----i~----~~~g~~  106 (451)
                      .+.+.-.+.++|.|+.-|...+++++.++++       +|.....+...+.++|..++..+...    +.    .++||+
T Consensus       120 ~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~-------~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR  192 (490)
T PRK10642        120 LLLLCKMAQGFSVGGEYTGASIFVAEYSPDR-------KRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWR  192 (490)
T ss_pred             HHHHHHHHHHhHhHhhHHHHHHHHHHhCCCC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHH
Confidence            4677778889999999999999999988752       34556677777788888777654433    22    368999


Q ss_pred             chhhHHHHHHH
Q 013020          107 VGFGVPAVIML  117 (451)
Q Consensus       107 ~~F~i~~i~~~  117 (451)
                      +.|.+.++..+
T Consensus       193 ~~f~i~~~~~l  203 (490)
T PRK10642        193 IPFFIALPLGI  203 (490)
T ss_pred             HHHHHHHHHHH
Confidence            99998665433

>TIGR00897 2A0118 polyol permease family

Probab=97.92  E-value=0.011  Score=60.47  Aligned_cols=73  Identities=15%  Similarity=0.186  Sum_probs=51.8

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHH-HHHhhhhheeeeccCccchhhH
Q 013020           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASS-IVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        33 ~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa-~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      ...+++...+.++|.+..-+...+...+.+++       ++|.++..++..+.++|. .+++.+.+++.+..||...+..
T Consensus       105 ~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~  177 (402)
T TIGR00897       105 YPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQ-------DNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS  177 (402)
T ss_pred             HHHHHHHHHHHHcchHHHHhHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence            44555566666777776666666666666553       468889999999999996 6788888888888886544443


Q ss_pred             H
Q 013020          112 P  112 (451)
Q Consensus       112 ~  112 (451)
                      .
T Consensus       178 ~  178 (402)
T TIGR00897       178 A  178 (402)
T ss_pred             H
Confidence            3

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.91  E-value=0.00074  Score=68.20  Aligned_cols=83  Identities=17%  Similarity=0.240  Sum_probs=68.0

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccC--ccchh
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG--WKVGF  109 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g--~~~~F  109 (451)
                      +...++++..+.++|.|...+...++..|.+++       ++|....+++..+.++|..+++.+.+.+.+..+  |++.|
T Consensus        99 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f  171 (405)
T TIGR00891        99 GYITMFIARLVIGIGMGGEYGSSAAYVIESWPK-------HLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALF  171 (405)
T ss_pred             cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCCh-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHH
Confidence            456678888899999999999999999998864       357888999999999999999988888877666  99999


Q ss_pred             hHHHHHHHHHHH
Q 013020          110 GVPAVIMLLSAL  121 (451)
Q Consensus       110 ~i~~i~~~i~li  121 (451)
                      .+.++..++.++
T Consensus       172 ~~~~~~~~~~~~  183 (405)
T TIGR00891       172 FISILPIIFALW  183 (405)
T ss_pred             HHHHHHHHHHHH
Confidence            887665555443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.88  E-value=1e-05  Score=82.33  Aligned_cols=147  Identities=13%  Similarity=0.159  Sum_probs=105.9

Q ss_pred             ccccCchhhhhHHHH---HHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 013020          236 FEIPSGSFNIFAILT---LTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGI  312 (451)
Q Consensus       236 ~~ip~~~l~~~n~l~---iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~  312 (451)
                      +++.++....+.+.+   -+++.|++..+-    .|       ....+-|++|..+=+++.+..++.             
T Consensus        63 fni~~s~~Gll~~vf~v~~~i~sPl~gyLa----dr-------yNR~~v~~vG~~iW~~Av~~~~fs-------------  118 (493)
T KOG1330|consen   63 FNISDSELGLLQTVFIVVFMIASPLFGYLA----DR-------YNRKRVIAVGIFIWTLAVFASGFS-------------  118 (493)
T ss_pred             cCCCchhccchhHHHHHHHHHHHHHHHHHH----hh-------cCcceEEeeHHHHHHHHHHHHHHH-------------
Confidence            456565544444444   456788888763    33       233445788988888887755444             


Q ss_pred             CCCccccccchHHHHH-HHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCC
Q 013020          313 SDDLRAVVQMSAMWQL-PYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGG  391 (451)
Q Consensus       313 ~~~~~~~~~~s~~wli-~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~  391 (451)
                                +-+||+ ..-.+.|+||.-.+|....++.+..|+..||.++|+++++.-+|+.+|....+.+...+.   
T Consensus       119 ----------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~---  185 (493)
T KOG1330|consen  119 ----------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF---  185 (493)
T ss_pred             ----------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc---
Confidence                      346665 577899999999999999999999999999999999999999999998877766654431   


Q ss_pred             CCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 013020          392 NGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYG  431 (451)
Q Consensus       392 ~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~  431 (451)
                        .|          .+-|+.-++++++.+++.+++.+-=+
T Consensus       186 --~W----------r~af~~~avl~vi~~~L~~~f~~eP~  213 (493)
T KOG1330|consen  186 --WW----------RWAFRGSAVLGVIVGLLVFLFVREPE  213 (493)
T ss_pred             --ce----------EEEEEeehHHHHHHHHHHHhhccCcc
Confidence              24          23466788888888777666555433

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.88  E-value=0.0016  Score=67.47  Aligned_cols=83  Identities=10%  Similarity=0.031  Sum_probs=64.5

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhe-eeeccCccchhhH
Q 013020           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVY-IQDNLGWKVGFGV  111 (451)
Q Consensus        33 ~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~-i~~~~g~~~~F~i  111 (451)
                      ...+++...+.+++.|..-+.......|.+++       ++|..++++++.+.++|..+++.+.+. +..+.+|+.+|.+
T Consensus       118 ~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~-------~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~  190 (438)
T TIGR00712       118 IAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQ-------SERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYF  190 (438)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHhcCc-------ccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHH
Confidence            44566777788888888888888888887764       357889999999999999998876654 5556799999999


Q ss_pred             HHHHHHHHHHH
Q 013020          112 PAVIMLLSALS  122 (451)
Q Consensus       112 ~~i~~~i~li~  122 (451)
                      .++..++..+.
T Consensus       191 ~~~~~~i~~~~  201 (438)
T TIGR00712       191 PAICAIIVALF  201 (438)
T ss_pred             HHHHHHHHHHH
Confidence            87776665443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=97.86  E-value=0.0044  Score=64.09  Aligned_cols=79  Identities=25%  Similarity=0.423  Sum_probs=61.8

Q ss_pred             hHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheee--------eccCc
Q 013020           34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ--------DNLGW  105 (451)
Q Consensus        34 ~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~--------~~~g~  105 (451)
                      ..+.+.-.+.++|.|+.-|...++++|.+++       ++|..+.++.+.+.+.|.++++.+...+.        ..+||
T Consensus       125 ~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~-------~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gW  197 (432)
T PRK10406        125 ALLLLARLFQGLSVGGEYGTSATYMSEVAVE-------GRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGW  197 (432)
T ss_pred             HHHHHHHHHHHhhhhhhHhhHHHHHHHhCCC-------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccch
Confidence            4577777889999999999999999998875       24566788889999999998886654443        26899


Q ss_pred             cchhhHHHHHHHHH
Q 013020          106 KVGFGVPAVIMLLS  119 (451)
Q Consensus       106 ~~~F~i~~i~~~i~  119 (451)
                      ++.|.+.++..++.
T Consensus       198 r~~F~i~~~~~ll~  211 (432)
T PRK10406        198 RIPFALGAVLAVVA  211 (432)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999877655544

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.86  E-value=0.00056  Score=71.51  Aligned_cols=82  Identities=10%  Similarity=0.022  Sum_probs=63.1

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeecc---Cccc
Q 013020           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL---GWKV  107 (451)
Q Consensus        31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~---g~~~  107 (451)
                      .+...+++...+.++|.|..-|...+.+++.++++       +|.....++-.+.++|..+++.+..++.+..   +|+.
T Consensus       120 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~-------~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~  192 (467)
T PRK09556        120 VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRR-------KRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIG  192 (467)
T ss_pred             chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcc-------ceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchh
Confidence            35667777778888999998899999999998753       4667788888999999999988776665542   5888


Q ss_pred             hhhHHHHHHHHH
Q 013020          108 GFGVPAVIMLLS  119 (451)
Q Consensus       108 ~F~i~~i~~~i~  119 (451)
                      .|.++++..++.
T Consensus       193 ~f~~~g~~~~~~  204 (467)
T PRK09556        193 MFIFPSIIALII  204 (467)
T ss_pred             HHHHHHHHHHHH
Confidence            888866655443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=97.86  E-value=0.0034  Score=63.93  Aligned_cols=84  Identities=14%  Similarity=0.192  Sum_probs=57.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHH-HhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCC
Q 013020          323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL-SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNIN  401 (451)
Q Consensus       323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~-~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln  401 (451)
                      +.+|++...++.+++.........++..++.|++.+++..+. +.....+|+.+++.+.+..-+..      +       
T Consensus       306 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~------G-------  372 (396)
T TIGR00882       306 TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI------G-------  372 (396)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc------c-------
Confidence            566677777888988877777778888888899998886655 45667778777776665554211      1       


Q ss_pred             CcchhHHHHHHHHHHHHHHHH
Q 013020          402 KGHYDYYYWLLTALSMANFLY  422 (451)
Q Consensus       402 ~~~~~~~f~~la~l~lv~~~~  422 (451)
                         +...|.+.+++.++..++
T Consensus       373 ---~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       373 ---FQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             ---cHHHHHHHHHHHHHHHHH
Confidence               345566666666555543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.84  E-value=0.0051  Score=62.49  Aligned_cols=52  Identities=13%  Similarity=0.011  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHHHHHHHHHHHHHHh
Q 013020           74 LQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL  125 (451)
Q Consensus        74 ~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~~i~~~i~li~f~~  125 (451)
                      +..+-..+.++..+|.+++....+++.+++||+..|.+.++..++..+..+.
T Consensus       131 ~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~  182 (390)
T TIGR02718       131 LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW  182 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555667779999999988889999999999999988887766655433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.83  E-value=0.014  Score=59.16  Aligned_cols=270  Identities=16%  Similarity=0.153  Sum_probs=153.6

Q ss_pred             CCccchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCc--
Q 013020           28 ATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGW--  105 (451)
Q Consensus        28 ~~~~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~--  105 (451)
                      +.+.......++..++++|.+.-...-.++.+|.-+|       ++|.+.-++-|...-+|-.++.++.+.+-+.++-  
T Consensus        84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e-------~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~r  156 (403)
T PF03209_consen   84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPE-------ERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPER  156 (403)
T ss_pred             ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCH-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHH
Confidence            3444455566666677777777778888888887765       4678888898998889999998888877766653  


Q ss_pred             --cchhhHHHHHHHHHHHHHHhcCccEeecC---CCC-CchhHHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCC
Q 013020          106 --KVGFGVPAVIMLLSALSFFLASPFYVKSK---ANT-SLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPS  179 (451)
Q Consensus       106 --~~~F~i~~i~~~i~li~f~~g~~~~~~~~---p~~-~~l~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (451)
                        ...-.++.+.+.+.++-.+-.-+++.+..   ++. .++....+.+.   .+     |+.+                 
T Consensus       157 L~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~~f~~a~~~~~---~~-----~~a~-----------------  211 (403)
T PF03209_consen  157 LIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERPRPPFREAWRQVW---AS-----PQAR-----------------  211 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCCCccHHHHHHHHH---hC-----CChh-----------------
Confidence              22233344444444443333223333222   111 12222211110   00     1000                 


Q ss_pred             CchhhhhhhhhhcCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccCcCCCCccccCchhhhhHHHH---HHHHHH
Q 013020          180 ENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDRHVTPNFEIPSGSFNIFAILT---LTIWIG  256 (451)
Q Consensus       180 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g~~ip~~~l~~~n~l~---iii~~p  256 (451)
                      ..+-++.....-                   ++.|+          --+..+-+.-+.+|++.-..+|.++   .++-..
T Consensus       212 ~f~~fl~l~t~a-------------------~~~QD----------~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~  262 (403)
T PF03209_consen  212 RFFVFLFLGTLA-------------------FFMQD----------VILEPYGGEVFGMSVGETTRLTAFWGGGTLLGML  262 (403)
T ss_pred             HHHHHHHHHHHH-------------------HHhhH----------HHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            000011000000                   00010          1112111112345666555555554   333333


Q ss_pred             HHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHH
Q 013020          257 LYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGL  336 (451)
Q Consensus       257 l~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~i  336 (451)
                      +-.++..   +|       ..+.+--.+|....++++....+...                   .-+.+-+.+.-+++|+
T Consensus       263 ~~g~~l~---~~-------~~~~~~a~~G~~~~~~~f~lii~a~~-------------------~~~~~~~~~~~~l~G~  313 (403)
T PF03209_consen  263 LAGFLLS---RR-------LGKKRTAALGCLLGALAFALIILAGP-------------------LGSPWLFRPGVFLLGL  313 (403)
T ss_pred             HHHHHhc---CC-------CCchHHHHHHHHHHHHHHHHHHHHHh-------------------cccchHHHHHHHHHHH
Confidence            3333322   22       12222334677777777765444421                   1235557788899999


Q ss_pred             HHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhcccc
Q 013020          337 AMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDIT  387 (451)
Q Consensus       337 gEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s  387 (451)
                      |--+..+..++..-+.++++..|+.||+|....+++.-++..+.+...|..
T Consensus       314 g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~  364 (403)
T PF03209_consen  314 GNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLV  364 (403)
T ss_pred             hhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988888888887776654

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.81  E-value=0.00047  Score=68.79  Aligned_cols=137  Identities=10%  Similarity=0.009  Sum_probs=94.7

Q ss_pred             chhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccc
Q 013020          241 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  320 (451)
Q Consensus       241 ~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~  320 (451)
                      .++.+...+..++..|+...+.    +|.++|       +-+.++.++.+++.+..++.                     
T Consensus        32 ~~~~~~~~~~~~~~~~~~g~l~----d~~g~r-------~~~~~~~~~~~~~~~~~~~~---------------------   79 (399)
T TIGR00893        32 GYVFSAFSWGYVVGQFPGGWLL----DRFGAR-------KTLAVFIVIWGVFTGLQAFA---------------------   79 (399)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHH----HhcCcc-------eeeHHHHHHHHHHHHHHHHH---------------------
Confidence            3556666777677777666654    332221       11345666656555544433                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCC
Q 013020          321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNI  400 (451)
Q Consensus       321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~l  400 (451)
                       .+.++++...++.|++.....+....++.+..|++.|+..+|++.....+|..+++.+...+.+..      +|     
T Consensus        80 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~-----  147 (399)
T TIGR00893        80 -GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF------SW-----  147 (399)
T ss_pred             -cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC------Cc-----
Confidence             256667788899999999999999999999999999999999999999999999988876543211      33     


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHH
Q 013020          401 NKGHYDYYYWLLTALSMANFLYYLAC  426 (451)
Q Consensus       401 n~~~~~~~f~~la~l~lv~~~~~~~~  426 (451)
                           .+.|+..++++++..++.+..
T Consensus       148 -----~~~~~~~~~~~~~~~~~~~~~  168 (399)
T TIGR00893       148 -----QWAFIIEGVLGIIWGVLWLKF  168 (399)
T ss_pred             -----hHHHHHHHHHHHHHHHHhhhe
Confidence                 345666666666655554433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=97.77  E-value=0.00032  Score=69.33  Aligned_cols=132  Identities=15%  Similarity=0.144  Sum_probs=93.7

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020          242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ  321 (451)
Q Consensus       242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~  321 (451)
                      ++.+...+...+..|+...+..+.-+|           +-+.+|.++.+++.++..+.                      
T Consensus        36 ~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~----------------------   82 (352)
T PF07690_consen   36 LLFSAFFLGSALFSPFAGYLSDRFGRR-----------RVLIIGLLLFALGSLLLAFA----------------------   82 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHS-HH-----------HHHHHHHHHHHHHHHHHHHH----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCe-----------eeEeehhhhhhhHHHHhhhh----------------------
Confidence            455556666667777766654332222           23567777777774444422                      


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCC
Q 013020          322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNIN  401 (451)
Q Consensus       322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln  401 (451)
                      .+.++++...++.|+++.+..+....++.+..|++.|+..+|++.....+|..+++.+.....+.-      +|      
T Consensus        83 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~------~~------  150 (352)
T PF07690_consen   83 SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF------GW------  150 (352)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC------HH------
T ss_pred             hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc------cc------
Confidence            223467788899999999999999999999999999999999999999999999998887764210      22      


Q ss_pred             CcchhHHHHHHHHHHHHHHHH
Q 013020          402 KGHYDYYYWLLTALSMANFLY  422 (451)
Q Consensus       402 ~~~~~~~f~~la~l~lv~~~~  422 (451)
                          ...|++.+++.++..++
T Consensus       151 ----~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  151 ----RWAFLISAILSLIAAIL  167 (352)
T ss_dssp             ----CCHHHHHHHHHHHHHHH
T ss_pred             ----ccccccccchhhhhhhh
Confidence                23466777777777664

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00896 CynX cyanate transporter

Probab=97.70  E-value=0.0018  Score=64.82  Aligned_cols=82  Identities=15%  Similarity=0.154  Sum_probs=62.0

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeecc--Cccchh
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL--GWKVGF  109 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~--g~~~~F  109 (451)
                      +...++++..+.++|.|...+...+...|.++        ++|....+++..+.++|..+++.+.+++.++.  +|+..|
T Consensus        86 ~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f  157 (355)
T TIGR00896        86 GTALLFAGTALIGVGIAIINVLLPSLIKRDFP--------QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQAL  157 (355)
T ss_pred             cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc--------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            34566777788889998888888888877664        24677889999999999999998888877664  388888


Q ss_pred             hHHHHHHHHHHH
Q 013020          110 GVPAVIMLLSAL  121 (451)
Q Consensus       110 ~i~~i~~~i~li  121 (451)
                      .+.++..++.+.
T Consensus       158 ~~~~~~~~~~~~  169 (355)
T TIGR00896       158 AWWALPALLALL  169 (355)
T ss_pred             HHHHHHHHHHHH
Confidence            876665554443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.67  E-value=0.00079  Score=66.76  Aligned_cols=116  Identities=14%  Similarity=0.015  Sum_probs=82.4

Q ss_pred             chhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccc
Q 013020          241 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  320 (451)
Q Consensus       241 ~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~  320 (451)
                      +++.+...+..++..|+...+.    .|.++|       +-+.++.++.+++.+...+....                 .
T Consensus        37 g~~~~~~~~~~~i~~~~~G~l~----dr~g~r-------~~~~~~~~~~~~~~~~~~~~~~~-----------------~   88 (365)
T TIGR00900        37 SLAALAGMLPYVVLSPIAGALA----DRYDRK-------KVMIGADLIRAVLVAVLPFVALL-----------------G   88 (365)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHH----Hhhchh-------HHHHHHHHHHHHHHHHHHHHHHc-----------------C
Confidence            3455566666666777766654    332211       12445566555555555444310                 0


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      ..+.++++...++.+++..+..|....++.+..|++.|+..+|.......+|..+++.+.....
T Consensus        89 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  152 (365)
T TIGR00900        89 GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY  152 (365)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            1467777888899999999999999999999999999999999999999999999888876654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=97.65  E-value=0.00082  Score=68.01  Aligned_cols=88  Identities=13%  Similarity=0.193  Sum_probs=64.2

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhh--heeeeccCccchhh
Q 013020           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCI--VYIQDNLGWKVGFG  110 (451)
Q Consensus        33 ~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~--~~i~~~~g~~~~F~  110 (451)
                      .+.+.+-+.+-+.=.|-=-|.....++.=|..       ++|.+..+++-.+-|+|+.+.+.++  +++..+++|+.+|.
T Consensus       117 ~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr-------~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~  189 (448)
T COG2271         117 LFLFAVLWVLNGWFQGMGWPPCARTITHWFSR-------KERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFY  189 (448)
T ss_pred             HHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCc-------cccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHH
Confidence            33444444444444444456666667777764       3578888899999999999999988  89999999999999


Q ss_pred             HHHH-HHHHHHHHHHhcC
Q 013020          111 VPAV-IMLLSALSFFLAS  127 (451)
Q Consensus       111 i~~i-~~~i~li~f~~g~  127 (451)
                      +|++ .++++++.+..+|
T Consensus       190 ~pgiiaiival~~~~~~r  207 (448)
T COG2271         190 FPGIIAIIVALILLFLLR  207 (448)
T ss_pred             HHHHHHHHHHHHHHHHhC
Confidence            9977 5566666666555

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.65  E-value=0.00032  Score=69.90  Aligned_cols=137  Identities=8%  Similarity=0.062  Sum_probs=90.3

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020          242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ  321 (451)
Q Consensus       242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~  321 (451)
                      ++.+...+..++..|+..++.    +|.++|       +-+.+|.++.+++.+..++.                      
T Consensus        34 ~~~~~~~~~~~~~~~~~g~l~----dr~g~r-------~~~~~~~~~~~~~~~~~~~~----------------------   80 (379)
T TIGR00881        34 LLLSSFSIAYGISKFVMGSVS----DRSNPR-------VFLPIGLILCAIVNLFFGFS----------------------   80 (379)
T ss_pred             HHHHHHHHHHHhhhhhhhHHH----HhhCCe-------ehhHHHHHHHHHHHHHHHHh----------------------
Confidence            344555555555666555543    332211       23556777777666655443                      


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHH-HHhhhhccccccCCCCCCCCCCC
Q 013020          322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVAS-LIMNAVDDITKRGGNGGWIPSNI  400 (451)
Q Consensus       322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~-~l~~~~~~~s~~~~~~~w~~~~l  400 (451)
                      .+.++++...++.+++..+..|.....+.+..|++.|+..+|++.....+|..+++ .+.......      .+|     
T Consensus        81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~-----  149 (379)
T TIGR00881        81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL------YSW-----  149 (379)
T ss_pred             hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc------CCc-----
Confidence            24556677789999999999999999999999999999999999998999999888 344333211      133     


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHh
Q 013020          401 NKGHYDYYYWLLTALSMANFLYYLACC  427 (451)
Q Consensus       401 n~~~~~~~f~~la~l~lv~~~~~~~~~  427 (451)
                           ...|+..++++++..++.+...
T Consensus       150 -----~~~~~~~~~~~~~~~~~~~~~~  171 (379)
T TIGR00881       150 -----HWVFIVPGIIAIIVSLICFLLL  171 (379)
T ss_pred             -----hhHHHHHHHHHHHHHHHHheee
Confidence                 2345666666666555544443

>PRK15075 citrate-proton symporter; Provisional

Probab=97.58  E-value=0.008  Score=62.16  Aligned_cols=73  Identities=16%  Similarity=0.210  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhee--------eeccCcc
Q 013020           35 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYI--------QDNLGWK  106 (451)
Q Consensus        35 ~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i--------~~~~g~~  106 (451)
                      .+.++..+.++|.|..-|+...+.+|.+++       ++|.....++..+.|+|..+++.+.+.+        .+++||+
T Consensus       119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~-------~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr  191 (434)
T PRK15075        119 LVLLGRLLQGFSAGVELGGVSVYLAEIATP-------GRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWR  191 (434)
T ss_pred             HHHHHHHHhhccccccHHHHHHHHHhhCCc-------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchH
Confidence            456777888899999999999999998864       3467777777777777776666554443        3578999


Q ss_pred             chhhHHHH
Q 013020          107 VGFGVPAV  114 (451)
Q Consensus       107 ~~F~i~~i  114 (451)
                      +.|.+..+
T Consensus       192 ~~f~~~~~  199 (434)
T PRK15075        192 IPFLIGCL  199 (434)
T ss_pred             HHHHHHHH
Confidence            99997544

>PRK03545 putative arabinose transporter; Provisional

Probab=97.57  E-value=0.0021  Score=65.26  Aligned_cols=104  Identities=13%  Similarity=0.061  Sum_probs=77.3

Q ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhH
Q 013020          281 RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSI  360 (451)
Q Consensus       281 ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~  360 (451)
                      -+.+++++.+++.+..++.                      .|+++++...+++|+++....|....++.+..|++.|+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~----------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~  133 (390)
T PRK03545         76 LLIGLFVLFIASHVLSALA----------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQ  133 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhh
Confidence            3556777767666555433                      346667777889999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 013020          361 ASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLY  422 (451)
Q Consensus       361 ~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~  422 (451)
                      ++|++....++|..+++.+.....+.-      +|          ...|++.++++++..+.
T Consensus       134 ~~g~~~~~~~~g~~ig~~l~~~l~~~~------gw----------~~~f~~~~~~~~l~~~~  179 (390)
T PRK03545        134 ALSLLATGTALAMVLGLPLGRVIGQYL------GW----------RTTFLAIGGGALITLLL  179 (390)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHh------cH----------HHHHHHHHHHHHHHHHH
Confidence            999999999999999888876654211      33          34566666666555443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=97.57  E-value=0.0027  Score=65.27  Aligned_cols=80  Identities=13%  Similarity=0.036  Sum_probs=66.1

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHH
Q 013020          282 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA  361 (451)
Q Consensus       282 i~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~  361 (451)
                      +.+++++.+++.+..++.                      .|+++++...++.|++|....|....++.+..|++.|+..
T Consensus        76 ~~~~~~~~~~~~~~~~~~----------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~  133 (412)
T TIGR02332        76 IAGIMVLWGIASTATMFA----------------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARA  133 (412)
T ss_pred             HHHHHHHHHHHHHHHHHh----------------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHH
Confidence            456777777666655443                      3456677888999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHhhhh
Q 013020          362 STLSGAGLSAANLVASLIMNAV  383 (451)
Q Consensus       362 ~g~~~l~~aiG~~l~~~l~~~~  383 (451)
                      +|++....++|..+++.+....
T Consensus       134 ~~~~~~~~~~g~~~~~~~~~~l  155 (412)
T TIGR02332       134 NALFMIAMPVTMALGLILSGYI  155 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988887655

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.56  E-value=0.0023  Score=66.22  Aligned_cols=109  Identities=10%  Similarity=0.052  Sum_probs=75.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccc
Q 013020          243 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQM  322 (451)
Q Consensus       243 l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~  322 (451)
                      +.+...+...+..|+..++.    .|.+.+       +=+.+++++.+++.+..++.                      -
T Consensus        63 ~~~~~~~~~~~~~~~~G~l~----dr~g~r-------~~~~~~~~~~~~~~~~~~~~----------------------~  109 (434)
T PRK11663         63 LATLFYITYGVSKFVSGIVS----DRSNAR-------YFMGIGLIATGIINILFGFS----------------------S  109 (434)
T ss_pred             HHHHHHHHHHHHHhhhhHHH----hhcCCc-------hhHHHHHHHHHHHHHHHHHH----------------------h
Confidence            33444445555555555543    443211       12466777766666544433                      2


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      +.+.++...++.++++.+..+.....+.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus       110 ~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~  171 (434)
T PRK11663        110 SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIA  171 (434)
T ss_pred             HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445556778899999999999999999999999999999999999999999888776654

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=97.52  E-value=0.018  Score=59.23  Aligned_cols=84  Identities=12%  Similarity=0.109  Sum_probs=67.7

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeee------ccCc
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD------NLGW  105 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~------~~g~  105 (451)
                      +...++++-.+.++|.|..-|...+..++.+++       ++|.....++..+.++|..+++.+.+++.+      ..||
T Consensus        95 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gw  167 (412)
T TIGR02332        95 GPESLYLLRILVGIAEAGFLPGILLYLTFWFPA-------YFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGW  167 (412)
T ss_pred             CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccch
Confidence            356788888899999999988888888888874       467888899999999999999988887653      4799


Q ss_pred             cchhhHHHHHHHHHHHH
Q 013020          106 KVGFGVPAVIMLLSALS  122 (451)
Q Consensus       106 ~~~F~i~~i~~~i~li~  122 (451)
                      ++.|.+.++..++..++
T Consensus       168 r~~f~~~~~~~l~~~~~  184 (412)
T TIGR02332       168 QWLFLLEGFPSVILGVM  184 (412)
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            99999977665554443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.51  E-value=0.0037  Score=52.45  Aligned_cols=62  Identities=16%  Similarity=0.233  Sum_probs=53.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      +.++.....++.+++.-...+.....+.+..|++.|+..+|++.....+|..+++.+.....
T Consensus        50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  111 (141)
T TIGR00880        50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA  111 (141)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence            34556667789999999999999999999999999999999999999999999988776654

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=97.49  E-value=0.0017  Score=67.70  Aligned_cols=112  Identities=11%  Similarity=-0.032  Sum_probs=82.6

Q ss_pred             CchhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccc
Q 013020          240 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAV  319 (451)
Q Consensus       240 ~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~  319 (451)
                      .+|..+...+..++..|+..++..+.-||           +-+.+|.++.+++.+..+..                    
T Consensus        39 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------------   87 (485)
T TIGR00711        39 VQWVITSYMLANAISIPLTGWLAKRFGTR-----------RLFLISTFAFTLGSLLCGVA--------------------   87 (485)
T ss_pred             hhHHHHHHHHHHHHHHHhHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHhCc--------------------
Confidence            34666777777777777777664332221           22456666666655544321                    


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          320 VQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       320 ~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                        .+.++++...+++|++.....|....++.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus        88 --~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  150 (485)
T TIGR00711        88 --PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII  150 (485)
T ss_pred             --CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence              356667788899999999999999999999999999999999999999999999888776553

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=97.49  E-value=0.0028  Score=63.65  Aligned_cols=135  Identities=12%  Similarity=0.026  Sum_probs=89.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020          242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ  321 (451)
Q Consensus       242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~  321 (451)
                      ++.+.+.+..++..|+..++.    +|.++       .+-+.+|.++.+++.+..+..                      
T Consensus        44 ~~~~~~~~~~~~~~~~~g~l~----d~~g~-------r~~~~~~~~~~~~~~~~~~~~----------------------   90 (385)
T TIGR00710        44 MTLTLYLLGFAAGQLLWGPLS----DRYGR-------RPVLLLGLFIFALSSLGLALS----------------------   90 (385)
T ss_pred             HHHHHHHHHHHHHHHhhhhHH----HhcCC-------hHHHHHHHHHHHHHHHHHHHH----------------------
Confidence            344555555555566555543    33221       123456666666666654432                      


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCC
Q 013020          322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNIN  401 (451)
Q Consensus       322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln  401 (451)
                      .+.++++...++.++++....+....++.+..|++.|+..+|++.....+|..+++.+.....+..      +|      
T Consensus        91 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------~~------  158 (385)
T TIGR00710        91 NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL------SW------  158 (385)
T ss_pred             ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CH------
Confidence            245567777899999999999999999999999999999999999999999888888776654211      23      


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHH
Q 013020          402 KGHYDYYYWLLTALSMANFLYYLA  425 (451)
Q Consensus       402 ~~~~~~~f~~la~l~lv~~~~~~~  425 (451)
                          ...|+..+++.++..++.+.
T Consensus       159 ----~~~~~~~~~~~~~~~~~~~~  178 (385)
T TIGR00710       159 ----HAIFAFLSLAGILLSALIFF  178 (385)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHH
Confidence                33455566666555554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=97.45  E-value=0.0049  Score=65.02  Aligned_cols=112  Identities=12%  Similarity=-0.069  Sum_probs=83.0

Q ss_pred             CchhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccc
Q 013020          240 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAV  319 (451)
Q Consensus       240 ~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~  319 (451)
                      .+|..+...+...++.|+..++..+.-||           +-+.+|.++.+++.++.++.                    
T Consensus        43 ~~~~~~~~~l~~~~~~~~~G~l~D~~Grk-----------~~l~~~~~~~~~~~~~~~~a--------------------   91 (495)
T PRK14995         43 LLWIIDIYSLVMAGMVLPMGALGDRIGFK-----------RLLMLGGTLFGLASLAAAFS--------------------   91 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHHc--------------------
Confidence            34666666777777777776664332222           23566777777776665433                    


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcc-cCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          320 VQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTE-LPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       320 ~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~-aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                        -|+++++...+++|+|.....|.....+.+. .|++.|+..+|++.....+|..+++.+...+.
T Consensus        92 --~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~  155 (495)
T PRK14995         92 --PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL  155 (495)
T ss_pred             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence              3566678888999999999999888877665 58899999999999999999999998887764

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.45  E-value=0.024  Score=59.85  Aligned_cols=83  Identities=17%  Similarity=0.184  Sum_probs=65.4

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeee-----------
Q 013020           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD-----------  101 (451)
Q Consensus        33 ~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~-----------  101 (451)
                      ...++++..+.++|.|+.-+....+.++.+++       ++|....++++...++|.++++.+..++..           
T Consensus       115 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~-------~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~  187 (502)
T TIGR00887       115 MATLCFWRFWLGVGIGGDYPLSAIITSEFATK-------KWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAAD  187 (502)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence            46788999999999999999999999998875       467888899999999999888866543311           


Q ss_pred             ------------ccCccchhhHHHHHHHHHHHH
Q 013020          102 ------------NLGWKVGFGVPAVIMLLSALS  122 (451)
Q Consensus       102 ------------~~g~~~~F~i~~i~~~i~li~  122 (451)
                                  ..+|++.|.+.++..++..+.
T Consensus       188 ~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~  220 (502)
T TIGR00887       188 EASCTGSCVPAVDYMWRILIGFGAVPALLALYF  220 (502)
T ss_pred             cccccccccchhcccHHHHHHHHHHHHHHHHHH
Confidence                        247999998877766554443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10091 MFS transport protein AraJ; Provisional

Probab=97.41  E-value=0.0046  Score=62.71  Aligned_cols=111  Identities=11%  Similarity=0.003  Sum_probs=81.0

Q ss_pred             chhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccc
Q 013020          241 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  320 (451)
Q Consensus       241 ~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~  320 (451)
                      ++..+.+.+..++..|+..++.    +|.++       .+-+.+|.++.+++.+..++.                     
T Consensus        41 g~~~s~~~~~~~~~~~~~g~l~----dr~g~-------r~~~~~~~~~~~~~~~l~~~~---------------------   88 (382)
T PRK10091         41 GHMISYYALGVVVGAPIIALFS----SRYSL-------KHILLFLVALCVIGNAMFTLS---------------------   88 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH----ccCcc-------HHHHHHHHHHHHHHHHHHHHh---------------------
Confidence            3456667777777777776653    43221       123556777777666655433                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                       .+.++++...++.|+++....+.....+.+..|++.|+..+|++.....+|..++..+...+.
T Consensus        89 -~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  151 (382)
T PRK10091         89 -SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS  151 (382)
T ss_pred             -CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh
Confidence             346777778899999999999999889999999999999999998888888888877765543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.37  E-value=0.0069  Score=61.91  Aligned_cols=108  Identities=11%  Similarity=-0.041  Sum_probs=80.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccch
Q 013020          244 NIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMS  323 (451)
Q Consensus       244 ~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s  323 (451)
                      .+...+...+..|+...+.    .|.       ...+-+.+++++.+++.+..++.                      .+
T Consensus        61 ~~~~~~~~~~~~~~~g~l~----Dr~-------grr~~~~~~~~~~~~~~~~~~~~----------------------~~  107 (394)
T PRK10213         61 VTVTAFVAMFASLFITQTI----QAT-------DRRYVVILFAVLLTLSCLLVSFA----------------------NS  107 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHh----ccc-------CcHHHHHHHHHHHHHHHHHHHHH----------------------Ch
Confidence            3455666666666666543    332       22233567777777666554322                      35


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          324 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       324 ~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      .++++...++.+++.....|.....+.+..|++.|+..+|++....++|..+++.+.....
T Consensus       108 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~  168 (394)
T PRK10213        108 FSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLG  168 (394)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6677777899999999999999999999999999999999999989999999888887664

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.35  E-value=0.0054  Score=62.46  Aligned_cols=61  Identities=15%  Similarity=0.082  Sum_probs=53.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020          323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  383 (451)
Q Consensus       323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~  383 (451)
                      +.++++...++.+++.....|.....+.+..|++.|+..+|++.....+|..+++.+....
T Consensus       102 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  162 (406)
T PRK11551        102 DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLA  162 (406)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4666777889999999999999999999999999999999999998899999888776554

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.34  E-value=0.0062  Score=61.80  Aligned_cols=85  Identities=11%  Similarity=0.118  Sum_probs=63.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCC
Q 013020          323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINK  402 (451)
Q Consensus       323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~  402 (451)
                      +.++++...++++++..+..+.....+.+..|++.|+..+|++.....+|..+++.+.....+..      +|       
T Consensus        90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~------g~-------  156 (392)
T PRK10473         90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF------PW-------  156 (392)
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------Ch-------
Confidence            45566777889999999999999999999999999999999999888888888887766553211      33       


Q ss_pred             cchhHHHHHHHHHHHHHHHHH
Q 013020          403 GHYDYYYWLLTALSMANFLYY  423 (451)
Q Consensus       403 ~~~~~~f~~la~l~lv~~~~~  423 (451)
                         ...|++.++++++..++.
T Consensus       157 ---~~~~~~~~~~~~i~~~~~  174 (392)
T PRK10473        157 ---QSLFYTMAAMGILVLLLS  174 (392)
T ss_pred             ---HHHHHHHHHHHHHHHHHH
Confidence               344566666666555543

>TIGR01272 gluP glucose/galactose transporter

Probab=97.34  E-value=0.036  Score=54.78  Aligned_cols=87  Identities=10%  Similarity=-0.057  Sum_probs=67.2

Q ss_pred             ccchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeec-------
Q 013020           30 WSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-------  102 (451)
Q Consensus        30 ~~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~-------  102 (451)
                      ..+.+.+.+++.+++.|.+...+..++++++.-+++       ++.+..|+.-.+..+|++++|++.+.+-.+       
T Consensus         7 ~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~-------~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~   79 (310)
T TIGR01272         7 QRYYVLFLGALFVLASGLTILQVAANPYVSILGPIE-------TAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSM   79 (310)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcc-------hHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhh
Confidence            356889999999999999999999999999987543       456678888888999999999988765421       


Q ss_pred             ---------cCccchhhHHHHHHHHHHHHH
Q 013020          103 ---------LGWKVGFGVPAVIMLLSALSF  123 (451)
Q Consensus       103 ---------~g~~~~F~i~~i~~~i~li~f  123 (451)
                               ..|++.|.+-++..++..+++
T Consensus        80 ~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~  109 (310)
T TIGR01272        80 QVATANAEAAKVHTPYLLLAGALAVLAIIF  109 (310)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     478899995544444433443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.25  E-value=0.007  Score=60.15  Aligned_cols=135  Identities=11%  Similarity=0.055  Sum_probs=85.9

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020          242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ  321 (451)
Q Consensus       242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~  321 (451)
                      +..+...+...+..|+...+.    +|.++|       +-+.+|.++.+++.+..++.                      
T Consensus        42 ~~~s~~~~~~~~~~~~~G~l~----d~~G~r-------~~~~~~~~~~~~~~~~~~~~----------------------   88 (377)
T TIGR00890        42 IWFTLLLIGLAMSMPVGGLLA----DKFGPR-------AVAMLGGILYGLGFTFYAIA----------------------   88 (377)
T ss_pred             HHHHHHHHHHHHHhhhhHHHH----HHcCcc-------chhHHhHHHHHHHHHHHHHH----------------------
Confidence            344555556666666666654    333222       12456777777776655444                      


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCC
Q 013020          322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNIN  401 (451)
Q Consensus       322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln  401 (451)
                      .+.+.++...++.++++....+.....+.+..|+ .|+.+++++....++|..+++.+...+...      .+|      
T Consensus        89 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~------  155 (377)
T TIGR00890        89 DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-KRGLASGIIIGGYGLGSFILSPLITSVINL------EGV------  155 (377)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-ccHHHHHHHHHhcchhHhHHHHHHHHHHhc------ccH------
Confidence            2344556667799999998888888888777775 599999999998889988766555443211      123      


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHH
Q 013020          402 KGHYDYYYWLLTALSMANFLYYLAC  426 (451)
Q Consensus       402 ~~~~~~~f~~la~l~lv~~~~~~~~  426 (451)
                          ...|+..++++++..+..+..
T Consensus       156 ----~~~f~~~~~~~~~~~~~~~~~  176 (377)
T TIGR00890       156 ----PAAFIYMGIIFLLVIVLGAFL  176 (377)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHh
Confidence                345666676666665554443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=97.24  E-value=0.011  Score=59.36  Aligned_cols=132  Identities=19%  Similarity=0.132  Sum_probs=87.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccch
Q 013020          244 NIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMS  323 (451)
Q Consensus       244 ~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s  323 (451)
                      .++..+...+..|+...+    .+|.+       ..+-+.+|.++.+++.+...+.                      .+
T Consensus        32 ~~~~~~~~~~~~~~~g~l----~d~~g-------~~~~~~~~~~~~~i~~~~~~~~----------------------~~   78 (377)
T PRK11102         32 LSAYILGFAIGQLFYGPM----ADSFG-------RKPVILGGTLVFALAAVACALA----------------------QT   78 (377)
T ss_pred             HHHHHHHHHHHHHhhchH----HhhcC-------ChHHHHHHHHHHHHHHHHHHHH----------------------cc
Confidence            344455455555555443    23322       1223566777777776655433                      12


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCc
Q 013020          324 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKG  403 (451)
Q Consensus       324 ~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~  403 (451)
                      .+.++...++.+++.....+....++.+..|++.|+..+|++.....+|..+++.+.....+..      +|        
T Consensus        79 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~--------  144 (377)
T PRK11102         79 IDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF------SW--------  144 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------Ch--------
Confidence            3445667889999999999999999999999999999999999988999999888776554211      23        


Q ss_pred             chhHHHHHHHHHHHHHHHHHH
Q 013020          404 HYDYYYWLLTALSMANFLYYL  424 (451)
Q Consensus       404 ~~~~~f~~la~l~lv~~~~~~  424 (451)
                        ...|+..++++++..++..
T Consensus       145 --~~~~~~~~~~~~~~~~~~~  163 (377)
T PRK11102        145 --HAIFWVLALAAILAAALVF  163 (377)
T ss_pred             --HHHHHHHHHHHHHHHHHHH
Confidence              3445666666665554443

>PRK11462 putative transporter; Provisional

Probab=97.21  E-value=0.045  Score=57.30  Aligned_cols=80  Identities=18%  Similarity=0.282  Sum_probs=49.7

Q ss_pred             HHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeec-------cCccchh
Q 013020           37 YFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-------LGWKVGF  109 (451)
Q Consensus        37 ~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~-------~g~~~~F  109 (451)
                      ++...+..++.-.+.-.-.++.++.-++  +    ++|.+..++.-++.++|.++++.+...+.+.       .||....
T Consensus       113 ~~~~~~~~~~~t~~~ipy~al~~~lt~d--~----~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~  186 (460)
T PRK11462        113 AITYTLLTLLYTVVNIPYCALGGVITND--P----TQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGI  186 (460)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHhcCC--H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH
Confidence            3333445566666777777888877654  3    4688999999999999988876654332222       3465555


Q ss_pred             hHHHHHHHHHHHH
Q 013020          110 GVPAVIMLLSALS  122 (451)
Q Consensus       110 ~i~~i~~~i~li~  122 (451)
                      .+-++..++...+
T Consensus       187 ~i~~ii~~i~~~i  199 (460)
T PRK11462        187 AVLSVVAFMMLAF  199 (460)
T ss_pred             HHHHHHHHHHHHH
Confidence            5544444444433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.21  E-value=0.0025  Score=66.48  Aligned_cols=62  Identities=15%  Similarity=0.042  Sum_probs=56.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      +.++++..-+++|++|....|.....+.+..|++.|+.++|++.....+|..+++.+.....
T Consensus       130 ~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~  191 (465)
T TIGR00894       130 GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLC  191 (465)
T ss_pred             CchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667888899999999999999999999999999999999999999999999998877654

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.17  E-value=0.0028  Score=65.92  Aligned_cols=120  Identities=13%  Similarity=0.094  Sum_probs=83.6

Q ss_pred             chhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhh
Q 013020          279 KLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMS  358 (451)
Q Consensus       279 ~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~k  358 (451)
                      ..-|.+|+.+.++=|+...+.                      -|+|..+|.-+++++--.+++.+..+++...+|++++
T Consensus       436 v~v~~lgLa~~~~Rf~~~S~L----------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~  493 (618)
T KOG3762|consen  436 VNVMYLGLACNVGRFLYYSYL----------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLR  493 (618)
T ss_pred             cceeeehhhHHHHHHHHHHHh----------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcch
Confidence            344567777777666655544                      3456667888999999999999999999999999999


Q ss_pred             hHHHHHHhHHH-HHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcCcccCC
Q 013020          359 SIASTLSGAGL-SAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGR  436 (451)
Q Consensus       359 g~~~g~~~l~~-aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~~~~~~  436 (451)
                      ..++|+.-... ++|.-+|+++.+.+...         +       -.-.+|+..++.+++..+++..+-+.++++...
T Consensus       494 at~Q~l~~g~f~GlG~g~GslIGG~~v~~---------f-------g~~ttf~~~giAcl~~l~~~~~iq~~l~~~~~i  556 (618)
T KOG3762|consen  494 ATAQGLLQGIFHGLGKGLGSLIGGFVVER---------F-------GARTTFRIFGIACLVTLALFISIQLLLKRRGFI  556 (618)
T ss_pred             HHHHHHHHHHhcccCcchhhhhhhhhhee---------e-------hhHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Confidence            99999876332 44444444444443211         0       024567888888888888777776666665533

>TIGR00895 2A0115 benzoate transport

Probab=97.16  E-value=0.0043  Score=62.30  Aligned_cols=62  Identities=18%  Similarity=0.116  Sum_probs=54.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      +.++++...++.+++.....+....++.+..|++.|+..+|+......+|..+++.+.....
T Consensus       104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  165 (398)
T TIGR00895       104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI  165 (398)
T ss_pred             chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHh
Confidence            45566777899999999999999999999999999999999999999999999888776553

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.16  E-value=0.0081  Score=60.59  Aligned_cols=111  Identities=15%  Similarity=0.111  Sum_probs=80.1

Q ss_pred             chhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccc
Q 013020          241 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  320 (451)
Q Consensus       241 ~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~  320 (451)
                      .++.++..+...+..|+...+..    |.++|       +-+.++.++.+++.+..++.                     
T Consensus        50 g~~~~~~~~~~~~~~~~~G~l~D----r~g~r-------~~~~~~~~~~~~~~~~~~~~---------------------   97 (405)
T TIGR00891        50 ASLISAALISRWFGALMFGLWGD----RYGRR-------LPMVTSIVLFSAGTLACGFA---------------------   97 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HhccH-------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence            34556666666677777666543    32211       12445666555555444322                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                       .+.++++...++.|+++....+....++.+..|++.|+..+|++....++|..+++.+.....
T Consensus        98 -~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~  160 (405)
T TIGR00891        98 -PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVV  160 (405)
T ss_pred             -ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             245566777899999999999999999999999999999999999999999999988776654

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.15  E-value=0.0096  Score=61.01  Aligned_cols=110  Identities=15%  Similarity=0.144  Sum_probs=79.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020          242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ  321 (451)
Q Consensus       242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~  321 (451)
                      +..+...+..++..|+..++.    +|.++|       +-+.+|.++.+++.+..++.                      
T Consensus        57 ~~~~~~~~~~~l~~~~~g~l~----dr~g~r-------~~l~~~~~~~~~~~~~~~~~----------------------  103 (426)
T PRK12307         57 FLATAAFIGRPFGGALFGLLA----DKFGRK-------PLMMWSIVAYSVGTGLSGLA----------------------  103 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHhCCh-------HHHHHHHHHHHHHHHHHHHH----------------------
Confidence            345555555566666655543    443221       22456777777766655443                      


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      .+.++++...++.|+++....+....++.+..|++.|+..+|++....++|..+++.+.....
T Consensus       104 ~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~  166 (426)
T PRK12307        104 SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA  166 (426)
T ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc
Confidence            235567777899999999999999999999999999999999999999999999887765543

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.14  E-value=0.0019  Score=64.87  Aligned_cols=117  Identities=14%  Similarity=0.040  Sum_probs=96.5

Q ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchh-hh
Q 013020          281 RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM-SS  359 (451)
Q Consensus       281 ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~-kg  359 (451)
                      -|.+|++++..+-++.++.+                      |+..++..-.++|+|..+.+..|+++..+.-|+.. ||
T Consensus       138 pm~~Gl~vmf~sTilFafg~----------------------sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~  195 (464)
T KOG3764|consen  138 PMVAGLFVMFLSTILFAFGN----------------------SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERG  195 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHcc----------------------hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhh
Confidence            47899999999998888774                      23357788999999999999999999999999888 59


Q ss_pred             HHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcCcccC
Q 013020          360 IASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKG  435 (451)
Q Consensus       360 ~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~~~~~  435 (451)
                      ..||+-+-..++|..+|+.+.+...+.-.                ..-=|.+++.++++.+++-+++.+.++..++
T Consensus       196 ~vmGialgfislG~lvgPpfGGilYe~~G----------------k~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~  255 (464)
T KOG3764|consen  196 SVMGIALGFISLGVLVGPPFGGILYEFAG----------------KSAPFLVLAIVLLLDGALQLLVIEPTEMDPD  255 (464)
T ss_pred             HHHHHHHHHHhccceecCCcccchHhhcC----------------CcCcHHHHHHHHHHHHHHHHheeCccccCcc
Confidence            99999999999999999988887764321                1123789999999999988888877765553

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.13  E-value=0.015  Score=59.74  Aligned_cols=86  Identities=10%  Similarity=0.103  Sum_probs=63.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCC
Q 013020          322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNIN  401 (451)
Q Consensus       322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln  401 (451)
                      .|+++++..-+++|+++.+..+.......+..|++.++..+|++.....+|..+++.+.....+..      +|      
T Consensus       102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~------gw------  169 (413)
T PRK15403        102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV------HW------  169 (413)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CH------
Confidence            356677778899999999878877777778889999999999999988889888887776554211      34      


Q ss_pred             CcchhHHHHHHHHHHHHHHHHH
Q 013020          402 KGHYDYYYWLLTALSMANFLYY  423 (451)
Q Consensus       402 ~~~~~~~f~~la~l~lv~~~~~  423 (451)
                          ...|+..++++++..+..
T Consensus       170 ----~~~f~~~~~~~~i~~~~~  187 (413)
T PRK15403        170 ----KVLFAIIAVMGLIAFVGL  187 (413)
T ss_pred             ----HHHHHHHHHHHHHHHHHH
Confidence                345666676666655443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=97.08  E-value=0.017  Score=58.72  Aligned_cols=138  Identities=17%  Similarity=0.120  Sum_probs=106.3

Q ss_pred             chhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhH-hHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccc
Q 013020          241 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGI-GLLFSTASMTAWAIVEAARRSIAINEGISDDLRAV  319 (451)
Q Consensus       241 ~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~i-G~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~  319 (451)
                      .++-+...+.+.+..|++..+..++-||            |.-+ .+.+.++|=++.++.                    
T Consensus        51 G~lis~yAl~~ai~ap~l~~lt~r~~Rr------------~lLl~~l~lFi~~n~l~alA--------------------   98 (394)
T COG2814          51 GQLITAYALGVALGAPLLALLTGRLERR------------RLLLGLLALFIVSNLLSALA--------------------   98 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccchH------------HHHHHHHHHHHHHHHHHHHh--------------------
Confidence            3778899999999999998875443222            2333 334444444444433                    


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCC
Q 013020          320 VQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSN  399 (451)
Q Consensus       320 ~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~  399 (451)
                        -|.+.++..-++.+++--...+++...+.+.+|++.|+..+|+-+...+++..+|..+..++.+.-      +|    
T Consensus        99 --p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~------GW----  166 (394)
T COG2814          99 --PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF------GW----  166 (394)
T ss_pred             --ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh------hH----
Confidence              567778888999999999999999999999999999999999999999999999888888876543      56    


Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 013020          400 INKGHYDYYYWLLTALSMANFLYYLACCK  428 (451)
Q Consensus       400 ln~~~~~~~f~~la~l~lv~~~~~~~~~~  428 (451)
                            -.-|+.+++++++..+..+...+
T Consensus       167 ------R~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         167 ------RATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHhCC
Confidence                  24577888888888777777666

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.08  E-value=0.0036  Score=68.27  Aligned_cols=132  Identities=9%  Similarity=-0.045  Sum_probs=86.1

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhh-------------
Q 013020          242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAI-------------  308 (451)
Q Consensus       242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~-------------  308 (451)
                      ++.+.+-+.-.+.+++..++    ..|.       ...+-+++|+++.+++.++.++.+........             
T Consensus        72 ~i~s~~~i~~~~~~i~v~~~----~~r~-------~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~  140 (633)
T TIGR00805        72 LINGSYEIGNLLLIIFVSYF----GTKL-------HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSA  140 (633)
T ss_pred             eeeehhhHHHHHHHHHHHHh----hccc-------CcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccccc
Confidence            34455555555666665554    2332       23445889999999998888776421100000             


Q ss_pred             hcCCC--C------------Cccccc--cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHH
Q 013020          309 NEGIS--D------------DLRAVV--QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAA  372 (451)
Q Consensus       309 ~~g~~--~------------~~~~~~--~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG  372 (451)
                      +..+-  +            .+....  ...+..++..-+++|+|+....+.+..++.+..|++.++.++|++.....+|
T Consensus       141 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG  220 (633)
T TIGR00805       141 NSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFG  220 (633)
T ss_pred             ccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhh
Confidence            00000  0            000000  1234455567799999999999999999999999999999999999999988


Q ss_pred             HHHHHHHhhhhc
Q 013020          373 NLVASLIMNAVD  384 (451)
Q Consensus       373 ~~l~~~l~~~~~  384 (451)
                      ..+|..+.+.+.
T Consensus       221 ~~lG~llgg~l~  232 (633)
T TIGR00805       221 PAFGYLLGSFCL  232 (633)
T ss_pred             hHHHHHHHHHHH
Confidence            888877776654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.07  E-value=0.045  Score=56.89  Aligned_cols=85  Identities=18%  Similarity=0.057  Sum_probs=63.8

Q ss_pred             hHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHHH
Q 013020           34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA  113 (451)
Q Consensus        34 ~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~~  113 (451)
                      ....+.+.+..+|.....-..-++..+.-.+++.     .+...-++.|.+.++|++++..+.+++.++.+++..|.+++
T Consensus        87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~-----~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~  161 (433)
T PF03092_consen   87 AIAVVLLFLASFGYAFADVAADALVVELARREPE-----SRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISA  161 (433)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc-----hhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHH
Confidence            3445556667777777777777777766554433     35566678899999999999989999999999999999988


Q ss_pred             HHHHHHHHHH
Q 013020          114 VIMLLSALSF  123 (451)
Q Consensus       114 i~~~i~li~f  123 (451)
                      +.-.+.++..
T Consensus       162 ~~~~l~~~~~  171 (433)
T PF03092_consen  162 ALPLLMLIVA  171 (433)
T ss_pred             HHHHHHHHHH
Confidence            7766665443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=97.06  E-value=0.027  Score=57.17  Aligned_cols=89  Identities=15%  Similarity=0.203  Sum_probs=67.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCC
Q 013020          322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNIN  401 (451)
Q Consensus       322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln  401 (451)
                      .|..+++..-++.|+||.. .+.....+.+..|++.|+.++|++.....+|..++..+...+.+.      .+|      
T Consensus        77 ~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~------~gW------  143 (368)
T TIGR00903        77 FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA------GGL------  143 (368)
T ss_pred             ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------cch------
Confidence            3678888889999999986 456666678889999999999999999999999998888776532      156      


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHh
Q 013020          402 KGHYDYYYWLLTALSMANFLYYLACC  427 (451)
Q Consensus       402 ~~~~~~~f~~la~l~lv~~~~~~~~~  427 (451)
                          ...|...++++++..++.+...
T Consensus       144 ----r~~f~~~~~l~~~~~~~~~~~l  165 (368)
T TIGR00903       144 ----QLLIIPIAAVAAAGIILVLAAL  165 (368)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHc
Confidence                2456666777766655544433

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=97.06  E-value=0.016  Score=59.20  Aligned_cols=108  Identities=10%  Similarity=0.062  Sum_probs=78.0

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020          242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ  321 (451)
Q Consensus       242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~  321 (451)
                      ++.+.+.+...+..|+..++..+.-+|           +=+.+|+++.+++.+..++.                      
T Consensus        48 ~~~s~~~~~~~l~~~~~g~l~dr~G~r-----------~~l~~~~~l~~~~~~~~~~a----------------------   94 (393)
T PRK09705         48 LLTALPVVTMGGLALAGSWLHQHVSER-----------RSVAISLLLIAVGALMRELY----------------------   94 (393)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHC----------------------
Confidence            444555556666666666654332222           23678888888888877654                      


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020          322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  383 (451)
Q Consensus       322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~  383 (451)
                      .++++++..-++.|+++....+...+.+.+..| +.|+.++|++......|..+++.+....
T Consensus        95 ~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l  155 (393)
T PRK09705         95 PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWL  155 (393)
T ss_pred             cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            234456667899999999999999999988887 6689999999988888888888776654

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=97.05  E-value=0.02  Score=58.59  Aligned_cols=81  Identities=17%  Similarity=0.093  Sum_probs=65.9

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHH
Q 013020          282 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA  361 (451)
Q Consensus       282 i~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~  361 (451)
                      +.+|.++.+++++.....                      -++++++...++.++++.+..|.....+.+.+|++.++..
T Consensus        79 l~~~~~~~~~~~~~~~~~----------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a  136 (400)
T PRK11646         79 IVTGMLMRAAGFATMAIA----------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRF  136 (400)
T ss_pred             HHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            456777777776655432                      2467777888999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHhhhhc
Q 013020          362 STLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       362 ~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      +|+......+|..+++.+.....
T Consensus       137 ~~~~~~~~~~g~~ig~~l~g~l~  159 (400)
T PRK11646        137 FSLLMMQDSAGAVIGALLGSWLL  159 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999989999988888877664

>PRK10054 putative transporter; Provisional

Probab=97.02  E-value=0.024  Score=57.98  Aligned_cols=110  Identities=11%  Similarity=0.035  Sum_probs=74.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020          242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ  321 (451)
Q Consensus       242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~  321 (451)
                      +..++..+.-++..|+..++.    .|.++|       +-+.+|.++.+++++..++..                     
T Consensus        47 ~~~s~~~~~~~~~~~~~G~l~----Dr~g~k-------~~~~~~~~~~~~~~~~~~~~~---------------------   94 (395)
T PRK10054         47 YAMTIALTIGVVFSLGFGILA----DKFDKK-------RYMLLAITAFASGFIAIPLVN---------------------   94 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----hhcCcc-------hhHHHHHHHHHHHHHHHHHHh---------------------
Confidence            344455555566667666654    332211       124567777767666554432                     


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                       +.+..+..+.+.+.+.....|.....+.+..|++.|+..+|+......+|..+++.+.....
T Consensus        95 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~  156 (395)
T PRK10054         95 -NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV  156 (395)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             22333445567777877778888899999999999999999999888899998888877754

>PRK10133 L-fucose transporter; Provisional

Probab=97.02  E-value=0.2  Score=51.96  Aligned_cols=61  Identities=13%  Similarity=0.077  Sum_probs=46.2

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhe
Q 013020           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVY   98 (451)
Q Consensus        31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~   98 (451)
                      .+...+.++..+.++|.|...+..+++++|..++       +++....+.+.....+|..+++.+.+.
T Consensus       115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~-------~~~~~~~s~~~~~~~~G~~~g~~~g~~  175 (438)
T PRK10133        115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE-------SSGHFRLNLAQTFNSFGAIIAVVFGQS  175 (438)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCh-------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888999999999999999999999875332       233445677777778888888876554

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.01  E-value=0.015  Score=59.75  Aligned_cols=110  Identities=14%  Similarity=0.015  Sum_probs=79.3

Q ss_pred             chhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccc
Q 013020          241 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  320 (451)
Q Consensus       241 ~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~  320 (451)
                      .++.+...+...+..|+...+..+.-||           +-+.+|.++.+++.+...+..                   .
T Consensus        74 ~~~~~~~~~~~~i~~~~~g~l~d~~grr-----------~~~~~~~~~~~~~~~~~~~~~-------------------~  123 (481)
T TIGR00879        74 GLVVSIFLVGGFIGALFAGWLSDRFGRK-----------KSLLIIALLFVIGAILMGLAA-------------------F  123 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhhHhhhhhhhH-----------HHHHHHHHHHHHHHHHHHHhc-------------------c
Confidence            3455555666666667666654322221           224566666666665554331                   1


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHh
Q 013020          321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIM  380 (451)
Q Consensus       321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~  380 (451)
                      ..+.++++...++.|+++....+....++.+..|++.|+..+|++.....+|..++..+.
T Consensus       124 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       124 ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            234456777889999999999999999999999999999999999999999999998877

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=96.98  E-value=0.021  Score=60.47  Aligned_cols=98  Identities=15%  Similarity=0.056  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcc
Q 013020          325 MWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGH  404 (451)
Q Consensus       325 ~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~  404 (451)
                      +-++..-+++|+..-...........+..+...-+-..|+..+..+++..+++.+.+.+.+.+               ++
T Consensus       389 ~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t---------------g~  453 (509)
T KOG2504|consen  389 VGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT---------------GN  453 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc---------------CC
Confidence            445566677777777777777777777777777788999999999999999998887665443               12


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhcCcccCCC
Q 013020          405 YDYYYWLLTALSMANFLYYLACCKAYGPFKGRV  437 (451)
Q Consensus       405 ~~~~f~~la~l~lv~~~~~~~~~~~y~~~~~~~  437 (451)
                      ++..|...+...+++++++++....++++++..
T Consensus       454 Y~~~f~~~g~~~~~s~~~~~~~~~~~~~~~~~~  486 (509)
T KOG2504|consen  454 YDHAFYFCGLCFLLSAVLLLILRECLKRREKSA  486 (509)
T ss_pred             eeeehhhcChHHHHHHHHHHHhHHHHHhccccc
Confidence            556667778877877777666653455544443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=96.98  E-value=0.037  Score=55.19  Aligned_cols=107  Identities=15%  Similarity=0.065  Sum_probs=70.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020          242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ  321 (451)
Q Consensus       242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~  321 (451)
                      ++.+...+..++..|+..++.    .|.++|       +-+.+|.++.+++.+..++..                     
T Consensus        41 ~~~~~~~~~~~~~~~~~g~l~----dr~g~r-------~~~~~~~~~~~i~~~~~~~~~---------------------   88 (366)
T TIGR00886        41 NLVAVPVLAGAVLRIILGFLV----DKFGPR-------YTTTLSLLLLAIPCLWAGLAV---------------------   88 (366)
T ss_pred             HhhHHHHHHHHHHHHHHHHHH----HHhCch-------HHHHHHHHHHHHHHHHHHHHh---------------------
Confidence            445555556666666666554    332211       235667777777776655442                     


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhh
Q 013020          322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMN  381 (451)
Q Consensus       322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~  381 (451)
                      .+.++++...++++++.... +.....+.+..|++.|+..++++.....+|..+++.+..
T Consensus        89 ~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~  147 (366)
T TIGR00886        89 QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMP  147 (366)
T ss_pred             hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence            14566777788899987755 457788999999999999999988655566655555443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=96.96  E-value=0.013  Score=60.57  Aligned_cols=114  Identities=13%  Similarity=0.099  Sum_probs=76.3

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHH
Q 013020          282 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA  361 (451)
Q Consensus       282 i~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~  361 (451)
                      +.+|.++.+++.+..+....                  ...+.+.++...++.++++....+...+.+.+..|++.|+..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~  155 (438)
T TIGR00712        94 LPAGLILSAAVMLLMGFVPW------------------ATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTI  155 (438)
T ss_pred             hHHHHHHHHHHHHHHhcccc------------------ccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhH
Confidence            45677777776665443310                  013344456677889999999889888999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 013020          362 STLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCK  428 (451)
Q Consensus       362 ~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~  428 (451)
                      +|++....++|..+++.+....-...     .+|          ...|+..++++++..++.++..+
T Consensus       156 ~~~~~~~~~~g~~~~~~l~~~~~~~~-----~~w----------~~~f~~~~~~~~i~~~~~~~~~~  207 (438)
T TIGR00712       156 VSIWNCAHNIGGGIPPLLVLLGMAWF-----NDW----------HAALYFPAICAIIVALFAFAMMR  207 (438)
T ss_pred             HHHHHHHHHhHhHHHHHHHHHHHHHh-----hhh----------HHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999988899888877654322110     134          23566667666665554444433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK03699 putative transporter; Provisional

Probab=96.95  E-value=0.03  Score=56.96  Aligned_cols=61  Identities=11%  Similarity=0.012  Sum_probs=51.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020          323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  383 (451)
Q Consensus       323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~  383 (451)
                      +.++++...++.++++....+.....+.+..|++.|+..++......++|..+++.+...+
T Consensus        94 ~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  154 (394)
T PRK03699         94 SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYL  154 (394)
T ss_pred             hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555677789999999999999999999999999999999988888888888887776543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=96.94  E-value=0.017  Score=60.15  Aligned_cols=79  Identities=13%  Similarity=0.040  Sum_probs=58.8

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHH
Q 013020          282 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA  361 (451)
Q Consensus       282 i~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~  361 (451)
                      +.+|.++.+++.+..++...                  ..-++++++...++.++++....|.....+.+..|++.|+..
T Consensus        96 l~~~~~~~~i~~~~~~~~~~------------------~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~  157 (452)
T PRK11273         96 LPAGLILAAAVMLFMGFVPW------------------ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGI  157 (452)
T ss_pred             HHHHHHHHHHHHHHHHhhhc------------------ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHH
Confidence            55677777777766655421                  012455667778899999999888777888889999999999


Q ss_pred             HHHHhHHHHHHHHHHHH
Q 013020          362 STLSGAGLSAANLVASL  378 (451)
Q Consensus       362 ~g~~~l~~aiG~~l~~~  378 (451)
                      +|++.....+|..+.+.
T Consensus       158 ~~~~~~~~~~g~~~~~~  174 (452)
T PRK11273        158 VSVWNCAHNVGGGLPPL  174 (452)
T ss_pred             HHHHHHHHHhhhhHHHH
Confidence            99998888888754443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=96.91  E-value=0.0014  Score=66.63  Aligned_cols=95  Identities=13%  Similarity=0.035  Sum_probs=73.8

Q ss_pred             hHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHHH
Q 013020           34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA  113 (451)
Q Consensus        34 ~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~~  113 (451)
                      ..++++..+.++|.|..-|.......+.+++       +++.+.+.+++...++|..+++.+.+++.+..||+..|.+.+
T Consensus       303 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~  375 (399)
T PRK05122        303 WMALIGAALTGFGFSLVFPALGVEAVKRVPP-------QNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAA  375 (399)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            4456667778888887777777666665432       467889999999999999999888999999999999999998


Q ss_pred             HHHHHHHHHHHhcCccEeecCC
Q 013020          114 VIMLLSALSFFLASPFYVKSKA  135 (451)
Q Consensus       114 i~~~i~li~f~~g~~~~~~~~p  135 (451)
                      +..+++++..+..+++.+|+.|
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T PRK05122        376 LAALLGLALTWLLYRRAPRAVP  397 (399)
T ss_pred             HHHHHHHHHHHHhcccccccCC
Confidence            8888887776655555555444

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=96.91  E-value=0.016  Score=56.81  Aligned_cols=110  Identities=16%  Similarity=0.043  Sum_probs=81.3

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020          242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ  321 (451)
Q Consensus       242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~  321 (451)
                      +..+...+..++..|+..++.    +|.++|       +-+.+|.++.+++.+.....                      
T Consensus        38 ~~~~~~~~~~~~~~~~~g~~~----d~~g~r-------~~~~~~~~~~~~~~~~~~~~----------------------   84 (352)
T cd06174          38 LIVSAFSLGYALGSLLAGYLS----DRFGRR-------RVLLLGLLLFALGSLLLAFA----------------------   84 (352)
T ss_pred             HHHHHHHHHHHHHHHhHHHHH----HHhCCc-------hhhHHHHHHHHHHHHHHHHh----------------------
Confidence            445555566666666666654    332221       13566777777666655433                      


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      .+.++++...++.+++..+..+....+..+..|++.|+..+|.......+|..+++.+...+.
T Consensus        85 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  147 (352)
T cd06174          85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLA  147 (352)
T ss_pred             ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            235567778899999999999999999999999999999999999999999999988887664

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10504 putative transporter; Provisional

Probab=96.91  E-value=0.031  Score=58.18  Aligned_cols=62  Identities=15%  Similarity=-0.018  Sum_probs=53.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      +.++++...+++|++.....|.....+.+..|++.++..+|+......+|..+++.+...+.
T Consensus        97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~  158 (471)
T PRK10504         97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV  158 (471)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            45556777899999999999999999999999999999999998888888888887776654

>TIGR00898 2A0119 cation transport protein

Probab=96.88  E-value=0.015  Score=61.14  Aligned_cols=131  Identities=14%  Similarity=0.105  Sum_probs=89.7

Q ss_pred             chhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccc
Q 013020          241 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  320 (451)
Q Consensus       241 ~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~  320 (451)
                      ++.+++..+..++..++...+.    .|.++|       +=+.++.++.+++.+..++.                     
T Consensus       130 ~~~~s~~~~g~~~g~~~~g~l~----Dr~Grr-------~~~~~~~~~~~i~~~~~~~~---------------------  177 (505)
T TIGR00898       130 DLTQSCFFVGVLLGSFVFGYLS----DRFGRK-------KVLLLSTLVTAVSGVLTAFS---------------------  177 (505)
T ss_pred             HHHHHHHHHHHHHHHHhHHHhh----hhccch-------HHHHHHHHHHHHHHHHHHHc---------------------
Confidence            3455666666666767666553    333222       11344555555554443322                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCC
Q 013020          321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNI  400 (451)
Q Consensus       321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~l  400 (451)
                       .+.++++...++.|++.....+....++.+..|++.|+.+++++....++|..+++.+...+.         +|     
T Consensus       178 -~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---------~w-----  242 (505)
T TIGR00898       178 -PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP---------DW-----  242 (505)
T ss_pred             -ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---------HH-----
Confidence             356677888899999999999999999999999999999999998888999988887765543         24     


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHH
Q 013020          401 NKGHYDYYYWLLTALSMANFLYY  423 (451)
Q Consensus       401 n~~~~~~~f~~la~l~lv~~~~~  423 (451)
                           ...|+..++.+++..+.+
T Consensus       243 -----r~~~~~~~i~~~~~~~~~  260 (505)
T TIGR00898       243 -----RWLQLAVSLPTFLFFLLS  260 (505)
T ss_pred             -----HHHHHHHHHHHHHHHHHH
Confidence                 345566666666555544

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=96.86  E-value=0.035  Score=56.30  Aligned_cols=135  Identities=17%  Similarity=0.136  Sum_probs=85.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020          242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ  321 (451)
Q Consensus       242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~  321 (451)
                      ++.++..+...+..|+..++..    |.++|       +-+.++.++.+++.+.....                      
T Consensus        58 ~~~~~~~~~~~~~~~~~g~l~d----r~g~r-------~~~~~~~~~~~~~~~~~~~~----------------------  104 (408)
T PRK09874         58 LVFSITFLFSAIASPFWGGLAD----RKGRK-------IMLLRSALGMGIVMVLMGLA----------------------  104 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh----hhCcH-------HHHHHHHHHHHHHHHHHHHH----------------------
Confidence            3445566666667777666543    32211       12345555555555443322                      


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCC
Q 013020          322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNIN  401 (451)
Q Consensus       322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln  401 (451)
                      .+.++++...++.+++..+ .+.....+.+..|++.|+..+|+......+|..+++.+...+.+..      +|      
T Consensus       105 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~------  171 (408)
T PRK09874        105 QNIWQFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY------GL------  171 (408)
T ss_pred             hhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CH------
Confidence            3456677778888888765 4667788888999999999999998888888888888776653211      23      


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHH
Q 013020          402 KGHYDYYYWLLTALSMANFLYYLAC  426 (451)
Q Consensus       402 ~~~~~~~f~~la~l~lv~~~~~~~~  426 (451)
                          ...|++.+++.++..++.++.
T Consensus       172 ----~~~~~~~~~~~~~~~~~~~~~  192 (408)
T PRK09874        172 ----RPVFFITASVLFLCFLVTLFC  192 (408)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHH
Confidence                344566666666555544443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=96.86  E-value=0.021  Score=58.68  Aligned_cols=93  Identities=16%  Similarity=0.237  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhH-HHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcch
Q 013020          327 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGA-GLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHY  405 (451)
Q Consensus       327 li~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l-~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~  405 (451)
                      ++...+++|+.-.+..+++..++.+.+|+++|+.+||++.. ..++|..+|+.+.+...+.-..+   + .      -+.
T Consensus       304 ~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~---~-~------~~~  373 (400)
T PF03825_consen  304 QLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGAR---G-M------FDW  373 (400)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch---h-h------hhH
Confidence            34444689999999999999999999999999999999774 45777777777665544210000   0 0      013


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhh
Q 013020          406 DYYYWLLTALSMANFLYYLACCKA  429 (451)
Q Consensus       406 ~~~f~~la~l~lv~~~~~~~~~~~  429 (451)
                      ..++.+.+++.++..++|++..|.
T Consensus       374 ~~~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  374 SAVFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccC
Confidence            345666777777777777766443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=96.78  E-value=0.016  Score=60.87  Aligned_cols=112  Identities=10%  Similarity=0.042  Sum_probs=79.4

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCch---hh
Q 013020          282 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS---MS  358 (451)
Q Consensus       282 i~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~---~k  358 (451)
                      +.+|+++.+++++..++.                      .+.++++...+++++|+-+..|....++.++.|++   .|
T Consensus        82 l~~~~~~~~~g~~~~~~~----------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r  139 (475)
T TIGR00924        82 MVLGGIVLMLGHFMLAMS----------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRR  139 (475)
T ss_pred             HHHHHHHHHHHHHHHHhc----------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccc
Confidence            567777777777655432                      12344555677899999999999999999888765   48


Q ss_pred             hHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 013020          359 SIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYG  431 (451)
Q Consensus       359 g~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~  431 (451)
                      +...++++....+|..+|+.+...+.+..      +|          ..-|...++.++++.++++...+.++
T Consensus       140 ~~~~~~~~~~~niG~~ig~~l~g~l~~~~------g~----------~~~f~~~~~~~~~~~l~~~~~~~~~~  196 (475)
T TIGR00924       140 DGGFTLFYMSINIGSFISPLLAGVIAENY------GY----------HVGFNLAAVGMVIGLLTFFAGRHMLR  196 (475)
T ss_pred             cceehhHHHHHHHHHHHHHHHHHHHHHhc------Ch----------HHHHHHHHHHHHHHHHHHHHcccccc
Confidence            88899999999999999998887764311      23          34555566666666666666666554

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=96.75  E-value=0.052  Score=60.15  Aligned_cols=61  Identities=11%  Similarity=-0.001  Sum_probs=53.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020          323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  383 (451)
Q Consensus       323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~  383 (451)
                      +.++++...++.|++.....|....++...+|++.||..++++....++|..+++.+...+
T Consensus       254 s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~i  314 (742)
T TIGR01299       254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAI  314 (742)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777889999999999999999999999999999999999888889888887765443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00901 2A0125 AmpG-related permease

Probab=96.71  E-value=0.08  Score=52.81  Aligned_cols=63  Identities=14%  Similarity=0.036  Sum_probs=53.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      .+.+++...+++.++.-.+..|...+++.+.+|++.|+...|+......+|..+++.+.....
T Consensus        81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~  143 (356)
T TIGR00901        81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLA  143 (356)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455666677788888889999999999999999999999999998888999998888876554

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=96.71  E-value=0.0033  Score=52.72  Aligned_cols=86  Identities=14%  Similarity=0.104  Sum_probs=71.0

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +...+++...+.+++.|..-+...+...|.+++       ++|.+..++.+...++|..+++.+.+++.+..+|+..|.+
T Consensus        50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  122 (141)
T TIGR00880        50 NITVLIIARFLQGFGAAFALVAGAALIADIYPP-------EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLF  122 (141)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh-------hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHH
Confidence            355667777888888898889999999988875       3567888999999999999999999999888999999998


Q ss_pred             HHHHHHHHHHHHH
Q 013020          112 PAVIMLLSALSFF  124 (451)
Q Consensus       112 ~~i~~~i~li~f~  124 (451)
                      .++..+++.+...
T Consensus       123 ~~~~~~~~~~~~~  135 (141)
T TIGR00880       123 LAILALAAFILLA  135 (141)
T ss_pred             HHHHHHHHHHHHh
Confidence            8777776665544

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=96.68  E-value=0.03  Score=59.10  Aligned_cols=61  Identities=8%  Similarity=-0.135  Sum_probs=54.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020          323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  383 (451)
Q Consensus       323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~  383 (451)
                      +.++++...++.|+++....+....++...+|++.||.+++++.....+|..+++.+...+
T Consensus       114 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~  174 (502)
T TIGR00887       114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIV  174 (502)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888889999999999999999999999999999999999999999998888776554

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=96.67  E-value=0.65  Score=48.90  Aligned_cols=56  Identities=20%  Similarity=0.190  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhcccc
Q 013020          332 VLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDIT  387 (451)
Q Consensus       332 ~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s  387 (451)
                      ++.|+.--=..+.+=+++.++.|++..+.+.|+|-++.-..+.+|+.+.+++.+.+
T Consensus       388 ~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t  443 (477)
T PF11700_consen  388 VLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT  443 (477)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46666666777788899999999999999999999999999999999998887654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=96.67  E-value=0.0044  Score=67.55  Aligned_cols=86  Identities=13%  Similarity=0.184  Sum_probs=70.1

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeecc--------
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL--------  103 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~--------  103 (451)
                      ...+++++-.+.++|.|..-+...+++.|.+++       +++..++.+++.+.++|..+|+++++++.+.+        
T Consensus       171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~-------~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~  243 (633)
T TIGR00805       171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKS-------KNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNT  243 (633)
T ss_pred             eehhhHHHHHHHhccCCcchhcCchhhhccCCc-------cccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCC
Confidence            456788899999999999999999999998865       35788899999999999999999888766432        


Q ss_pred             --------------CccchhhHHHHHHHHHHHHHH
Q 013020          104 --------------GWKVGFGVPAVIMLLSALSFF  124 (451)
Q Consensus       104 --------------g~~~~F~i~~i~~~i~li~f~  124 (451)
                                    +|+++|.+.++..++..+.++
T Consensus       244 ~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~  278 (633)
T TIGR00805       244 EDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF  278 (633)
T ss_pred             CCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          388899988877766555444

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=96.67  E-value=0.071  Score=54.32  Aligned_cols=62  Identities=15%  Similarity=0.008  Sum_probs=49.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      +.++++...++.+++..+..+.....+.+..|++.++..+++......+|..+++.+.....
T Consensus       100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  161 (406)
T PRK15402        100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALI  161 (406)
T ss_pred             cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556777889999999999999999999999999988888877766777777777665543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=96.64  E-value=0.079  Score=54.54  Aligned_cols=113  Identities=11%  Similarity=0.003  Sum_probs=83.1

Q ss_pred             chhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccc
Q 013020          241 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  320 (451)
Q Consensus       241 ~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~  320 (451)
                      .++++...+..++..|+..++.    +|.+.       -+-+.+|+++.+++.+......                   .
T Consensus        41 g~l~s~~~~g~~i~~~~~g~l~----~r~G~-------r~~~~~g~~l~~~g~~l~~~~~-------------------~   90 (410)
T TIGR00885        41 ALVQSAFYGGYFIMAIPAAIFM----KKLSY-------KAGILLGLFLYALGAFLFWPAA-------------------E   90 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHhCc-------hHHHHHHHHHHHHHHHHHHHHH-------------------h
Confidence            3456666667777777766654    44322       2236678888777766543221                   0


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020          321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  383 (451)
Q Consensus       321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~  383 (451)
                      ..|.++++...++.++|..+..+....++.+.+|++.++..+++.....++|..+++.+...+
T Consensus        91 ~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l  153 (410)
T TIGR00885        91 IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQL  153 (410)
T ss_pred             hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            135666677789999999999999999999999999999999999999999999998887665

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=96.62  E-value=0.095  Score=53.48  Aligned_cols=108  Identities=14%  Similarity=0.017  Sum_probs=76.1

Q ss_pred             chhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccc
Q 013020          241 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  320 (451)
Q Consensus       241 ~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~  320 (451)
                      +++.+...+...++.|+..++..+.-||           +=+.++.++.+++.+..++..                    
T Consensus        41 ~~~~~~~~l~~~l~~~~~G~laDr~grr-----------~vl~~~~~~~~~~~~~~~~~~--------------------   89 (393)
T PRK11195         41 PLLQMFFVLAYIVLAPFVGAFADSFPKG-----------RVMFIANGIKLLGCLLMLFGI--------------------   89 (393)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhhccCCc-----------hhhHHHHHHHHHHHHHHHHHH--------------------
Confidence            4556666677777788877664333222           124455555555444332221                    


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                        +.   +...+++|+++.+..|...+.+.+..|++.++.++|++.....+|..+|+.+.+...
T Consensus        90 --~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~  148 (393)
T PRK11195         90 --HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA  148 (393)
T ss_pred             --HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              11   344678999999999999999999999999999999999888888888888877654

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=96.62  E-value=0.04  Score=57.49  Aligned_cols=79  Identities=16%  Similarity=0.154  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHH
Q 013020          331 LVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYW  410 (451)
Q Consensus       331 y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~  410 (451)
                      -++.++++....+.....+.+..| +.|+..+|++.....+|..+++.+...+.+..      +|          ..-|+
T Consensus       115 ~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~------gw----------r~~f~  177 (455)
T TIGR00892       115 GFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF------GW----------RGSFL  177 (455)
T ss_pred             HHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh------Ch----------HHHHH
Confidence            367788888776777777777665 68999999999999999988887766543211      34          34566


Q ss_pred             HHHHHHHHHHHHHHHH
Q 013020          411 LLTALSMANFLYYLAC  426 (451)
Q Consensus       411 ~la~l~lv~~~~~~~~  426 (451)
                      +.++++++..+..++.
T Consensus       178 ~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       178 ILGGLLLHCCVCGALM  193 (455)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            7777776665544433

>PRK03893 putative sialic acid transporter; Provisional

Probab=96.60  E-value=0.065  Score=56.13  Aligned_cols=62  Identities=19%  Similarity=0.178  Sum_probs=55.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      +.++++...++.+++.....+....++.+..|++.|+..+|++....++|+.+++.+...+.
T Consensus       107 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  168 (496)
T PRK03893        107 GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV  168 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45667778899999999999999999999999999999999999999999999998877654

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=96.55  E-value=0.044  Score=57.59  Aligned_cols=130  Identities=8%  Similarity=-0.056  Sum_probs=76.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccc-cc
Q 013020          242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRA-VV  320 (451)
Q Consensus       242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~-~~  320 (451)
                      ......++.-++.+|+..++-.+.-.|.++|    +|.  +..|.+..+++++.+++.......      +.++..+ ..
T Consensus        43 ~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR----rp~--il~g~~~~~~~l~ll~~~~~~~~~------~~~~~~~~~~  110 (477)
T TIGR01301        43 IIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR----RPF--IAAGAALVAFAVILIGFAADIGHL------FGDNLDKKTK  110 (477)
T ss_pred             HHHHHHHHHHHHHHhHeeehhcCCCCCCCCh----HHH--HHHHHHHHHHHHHHHHhCchhhhh------ccccccccch
Confidence            4556777788888888877655432233222    222  344566677777766654321000      0011000 11


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhh--hHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020          321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMS--SIASTLSGAGLSAANLVASLIMNAV  383 (451)
Q Consensus       321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~k--g~~~g~~~l~~aiG~~l~~~l~~~~  383 (451)
                      ...+++.+..+.+..++--...+..-+++.+.+|++.|  +...+......++|+.++..+....
T Consensus       111 ~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~  175 (477)
T TIGR01301       111 PRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYS  175 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22334444455555556666666778999999999876  5678877788899999988877653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=96.55  E-value=0.094  Score=53.04  Aligned_cols=110  Identities=7%  Similarity=-0.036  Sum_probs=79.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020          242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ  321 (451)
Q Consensus       242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~  321 (451)
                      +..+...+.-.+..|+..++..+.-+|           +-+.+|.++.+++++..++.                      
T Consensus        45 ~~~s~~~l~~~~~~~~~g~l~dr~g~k-----------~~~~~~~~~~~~~~~~~~~~----------------------   91 (381)
T PRK03633         45 VVSSSYFTGNLVGTLLAGYVIKRIGFN-----------RSYYLASLIFAAGCAGLGLM----------------------   91 (381)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHh----------------------
Confidence            444555555566666665554332222           23567777777776654432                      


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      -|.++++...++.|++.....|.....+.+..|++.|+..+|.+.....+|..+++.+.....
T Consensus        92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  154 (381)
T PRK03633         92 VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS  154 (381)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            245667778899999999999998888888999999999999999999999999988876653

>TIGR00899 2A0120 sugar efflux transporter

Probab=96.53  E-value=0.06  Score=53.79  Aligned_cols=90  Identities=9%  Similarity=-0.104  Sum_probs=56.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHH--HHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCC
Q 013020          323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA--STLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNI  400 (451)
Q Consensus       323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~--~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~l  400 (451)
                      |+++++..-++++.++....|...+...+..|++.|+..  .+......++|..+++.+.....+.      -+|     
T Consensus        86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~------~~~-----  154 (375)
T TIGR00899        86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG------FGF-----  154 (375)
T ss_pred             hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh------ccc-----
Confidence            344555555677777777888888888888887776643  5666666677777777766654321      033     


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 013020          401 NKGHYDYYYWLLTALSMANFLYYLACCK  428 (451)
Q Consensus       401 n~~~~~~~f~~la~l~lv~~~~~~~~~~  428 (451)
                           ...|++.+.++++..++.+...+
T Consensus       155 -----~~~f~~~~~~~~~~~~~~~~~~~  177 (375)
T TIGR00899       155 -----TVMFLTAALAFVLCGVLVWLFLP  177 (375)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHhCC
Confidence                 34566666666666555444334

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11010 ampG muropeptide transporter; Validated

Probab=96.52  E-value=0.11  Score=54.80  Aligned_cols=107  Identities=21%  Similarity=0.253  Sum_probs=77.7

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHH
Q 013020          282 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA  361 (451)
Q Consensus       282 i~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~  361 (451)
                      +.++.++.+++...+++..                   ...+.+|+...+++.+++-....+...++..+..|++.|+..
T Consensus        84 ll~~~i~~~~~~~~~a~~~-------------------~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~  144 (491)
T PRK11010         84 LLATQLLLLVAIAAMGFLE-------------------PGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAG  144 (491)
T ss_pred             HHHHHHHHHHHHHHHHHcC-------------------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHH
Confidence            4566666666666555442                   124577788888999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 013020          362 STLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLY  422 (451)
Q Consensus       362 ~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~  422 (451)
                      +|+......+|..+++.+...+.+..     .+|          ...|++.++++++..+.
T Consensus       145 ~~i~~~g~~lG~llg~~l~~~l~~~~-----~GW----------r~~f~i~a~l~ll~~l~  190 (491)
T PRK11010        145 AAISVLGYRLAMLVSGGLALWLADRY-----LGW----------QGMYWLMAALLIPCIIA  190 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc-----cCH----------HHHHHHHHHHHHHHHHH
Confidence            99999999999999987776654210     145          33566667666655443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=96.49  E-value=0.1  Score=52.83  Aligned_cols=62  Identities=16%  Similarity=0.120  Sum_probs=50.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      +.++++...++.+++.....+...++..+..|++.++..++.+.+...+|..+++.+.....
T Consensus        95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  156 (394)
T PRK11652         95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT  156 (394)
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677788999888888888888888889899999999988888888888887776653

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=96.48  E-value=0.011  Score=61.86  Aligned_cols=86  Identities=10%  Similarity=-0.062  Sum_probs=67.7

Q ss_pred             hhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhh
Q 013020          280 LRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSS  359 (451)
Q Consensus       280 ~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg  359 (451)
                      +-+.+++++.+++.+..+..-.         +        ...+.+.++...+++|++|.+..|.....+.+..|++.||
T Consensus        95 ~~l~~~~~~~~~~~~~~~~~~~---------~--------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg  157 (467)
T PRK09556         95 QFLPFLLILSAICMLGFGASLG---------S--------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRG  157 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHHh---------c--------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcccee
Confidence            3456777777766665554321         0        1245667778889999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHhhh
Q 013020          360 IASTLSGAGLSAANLVASLIMNA  382 (451)
Q Consensus       360 ~~~g~~~l~~aiG~~l~~~l~~~  382 (451)
                      .++|++.....+|..+++.+...
T Consensus       158 ~a~gi~~~~~~lG~~l~~~i~~~  180 (467)
T PRK09556        158 RFLGFWNISHNLGGAGAGGVALW  180 (467)
T ss_pred             eeEEeeecccchhhhHHHHHHHH
Confidence            99999999999999999887644

>PRK10489 enterobactin exporter EntS; Provisional

Probab=96.42  E-value=0.08  Score=54.21  Aligned_cols=116  Identities=6%  Similarity=-0.092  Sum_probs=78.4

Q ss_pred             chhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccc
Q 013020          241 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  320 (451)
Q Consensus       241 ~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~  320 (451)
                      .+..+...+..++..|+..++.    .|.+++       +-+.++.++.+++++..++....                 .
T Consensus        55 g~~~~~~~l~~~~~~~~~G~l~----dr~g~~-------~~l~~~~~~~~~~~~~~~~~~~~-----------------~  106 (417)
T PRK10489         55 GLSVTLTGGAMFIGLMVGGVLA----DRYDRK-------KLILLARGTCGLGFIGLALNAFL-----------------P  106 (417)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHh----hhcCCc-------eEEEehHHHHHHHHHHHHHHHHc-----------------C
Confidence            3455566666666666665553    332211       12445666666666554433110                 0


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      ..+.++++...++.+++..+..+.....+.+..|++.++..++++....++|..+++.+...+.
T Consensus       107 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~  170 (417)
T PRK10489        107 EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI  170 (417)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence            1345666677788999999999999999999999999999999988888888888887776543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=96.40  E-value=0.048  Score=57.58  Aligned_cols=83  Identities=8%  Similarity=-0.005  Sum_probs=62.8

Q ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCch--hh
Q 013020          281 RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS--MS  358 (451)
Q Consensus       281 ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~--~k  358 (451)
                      -+.+|.++.+++.+.+++...                   ...  -++....++++|+.+..|....++.++-|++  .|
T Consensus        83 ~~~~g~~~~~~g~~~~~~~~~-------------------~~~--ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~  141 (489)
T PRK10207         83 TIVLGAIVLAIGYFMTGMSLL-------------------KPD--LIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRL  141 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc-------------------chh--HHHHHHHHHHhccccccCCHHHHHHHhcCCCchhh
Confidence            467788888887776664310                   011  1334678889999999999999999999877  45


Q ss_pred             hHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          359 SIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       359 g~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      +..++++++...+|..+++.+...+.
T Consensus       142 ~~~~~~~~~~~nig~~~g~~l~g~l~  167 (489)
T PRK10207        142 DGAFTLFYMSINIGSLISLSLAPVIA  167 (489)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            77889999999999999988877764

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=96.38  E-value=0.077  Score=54.61  Aligned_cols=86  Identities=10%  Similarity=0.094  Sum_probs=64.3

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheee----------
Q 013020           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ----------  100 (451)
Q Consensus        31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~----------  100 (451)
                      .+.+.+.++..+.++|.|...+...+...+..++       +++.+..++.....++|+.+++.+.+.+.          
T Consensus        92 ~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~  164 (410)
T TIGR00885        92 MNYTLFLVGLFILTAGLGFLETAANPYILVMGPE-------STATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD  164 (410)
T ss_pred             ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence            3567788889999999999999999998876543       24556678888899999999988776552          


Q ss_pred             ----------------eccCccchhhHHHHHHHHHHHHH
Q 013020          101 ----------------DNLGWKVGFGVPAVIMLLSALSF  123 (451)
Q Consensus       101 ----------------~~~g~~~~F~i~~i~~~i~li~f  123 (451)
                                      +..+|++.|.+.++..++..+++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            12469999987766555444433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.38  E-value=0.34  Score=51.14  Aligned_cols=84  Identities=18%  Similarity=0.116  Sum_probs=68.0

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheee------eccCc
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ------DNLGW  105 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~------~~~g~  105 (451)
                      +.+.+.+--.+.++-.+..-|+....++.-|.++       ++..-+.++|-+.++|..+|.++...+.      ...||
T Consensus       133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~-------e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW  205 (495)
T KOG2533|consen  133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKS-------ERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW  205 (495)
T ss_pred             hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChh-------hhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc
Confidence            3455556667888889999999999999999863       5677788899999999999998887763      45799


Q ss_pred             cchhhHHHHHHHHHHHH
Q 013020          106 KVGFGVPAVIMLLSALS  122 (451)
Q Consensus       106 ~~~F~i~~i~~~i~li~  122 (451)
                      ++.|.|.++.+++..++
T Consensus       206 ~~~FiI~G~i~~~~gi~  222 (495)
T KOG2533|consen  206 RWLFIIEGVITLVLGIV  222 (495)
T ss_pred             eeehhHHHHHHHHHHhe
Confidence            99999998877666544

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=96.35  E-value=0.1  Score=54.37  Aligned_cols=120  Identities=13%  Similarity=0.038  Sum_probs=77.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccc
Q 013020          243 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQM  322 (451)
Q Consensus       243 l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~  322 (451)
                      ..+...+..++..++..++..++-||           +=+.++.++.+++.+..++.+......    +      .....
T Consensus        60 ~~s~~~ig~~~~~~~~G~l~dr~Grr-----------~~~~~~~~l~~i~~~~~~~~~~~~~~~----~------~~~~~  118 (479)
T PRK10077         60 CVASALIGCIIGGALGGYCSNRFGRR-----------DSLKIAAVLFFISALGSAWPEFGFTSI----G------PDNTG  118 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHhhccccccc----c------ccchh
Confidence            34444455556666665554333222           124566666666665555432210000    0      00123


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020          323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  383 (451)
Q Consensus       323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~  383 (451)
                      .+.+++..-++.|++.....|....++.+.+|++.||.++|++.....+|..++..+....
T Consensus       119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~  179 (479)
T PRK10077        119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFI  179 (479)
T ss_pred             HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455667779999999999999999999999999999999999988888888876655443

>PRK11043 putative transporter; Provisional

Probab=96.35  E-value=0.12  Score=52.38  Aligned_cols=62  Identities=10%  Similarity=-0.026  Sum_probs=48.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      +.++++...++++++.....+.....+.+..|++.++...+......++|..+++.+.....
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  154 (401)
T PRK11043         93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL  154 (401)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666677788899888888888888999999998888888777667777777776665543

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.35  E-value=0.17  Score=55.30  Aligned_cols=89  Identities=16%  Similarity=0.324  Sum_probs=62.0

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeee----------
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD----------  101 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~----------  101 (451)
                      -..++++|..+.++|.--+    .++|--..||+..+   ++...++.++|..--+|..+|.+++++.-+          
T Consensus       236 ~~llff~~q~l~GIG~Tpi----~tlGisYiDDnvk~---~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~  308 (735)
T KOG3626|consen  236 PFLLFFLGQLLLGIGATPI----FTLGISYIDDNVKK---KNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPI  308 (735)
T ss_pred             hHHHHHHHHHHhhcCCCCC----ccCCCccccccccc---cCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCC
Confidence            3446777777777776554    44555455544432   345678899999999999999887775321          


Q ss_pred             --------c-cCccchhhHHHHHHHHHHHHHHhcC
Q 013020          102 --------N-LGWKVGFGVPAVIMLLSALSFFLAS  127 (451)
Q Consensus       102 --------~-~g~~~~F~i~~i~~~i~li~f~~g~  127 (451)
                              . ..||+||++++..++++.+.++.-=
T Consensus       309 ~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fP  343 (735)
T KOG3626|consen  309 GITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFP  343 (735)
T ss_pred             CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence                    1 2499999999999988888776533

>TIGR00806 rfc RFC reduced folate carrier

Probab=96.34  E-value=0.16  Score=53.03  Aligned_cols=60  Identities=17%  Similarity=0.193  Sum_probs=55.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020          323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  383 (451)
Q Consensus       323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~  383 (451)
                      |++.+...-+++|++|.... ....++++-.|++.|+.++|++..+..+|..+++.++.+.
T Consensus       114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll  173 (511)
T TIGR00806       114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL  173 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46668888899999999999 9999999999999999999999999999999999999883

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=96.29  E-value=0.07  Score=62.08  Aligned_cols=62  Identities=16%  Similarity=-0.045  Sum_probs=55.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      ++++++...+++|++..+..|....++.+.+|++.|+.++|+.....++|..+++.+...+.
T Consensus       102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~  163 (1146)
T PRK08633        102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLF  163 (1146)
T ss_pred             cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            36677788899999999999999999999999999999999999999999999888877654

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.28  E-value=1.1  Score=47.06  Aligned_cols=79  Identities=11%  Similarity=0.015  Sum_probs=63.7

Q ss_pred             hhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 013020          342 MIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFL  421 (451)
Q Consensus       342 ~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~  421 (451)
                      .|...=+...+.|++-|+.++..-.+..-+.|++.+.....++..-                 -.++|...++.+++.++
T Consensus       386 gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~-----------------g~~~filF~i~~~~~~i  448 (485)
T KOG0569|consen  386 GPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVI-----------------GPYVFILFVIPLAIFLI  448 (485)
T ss_pred             CchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------cchhhHHHHHHHHHHHH
Confidence            6777778888999999999999999988899988888776665321                 13678888888888888


Q ss_pred             HHHHHhhhcCcccCCC
Q 013020          422 YYLACCKAYGPFKGRV  437 (451)
Q Consensus       422 ~~~~~~~~y~~~~~~~  437 (451)
                      ..+...+--|.|+..|
T Consensus       449 ~~~~~lPETkgr~~~e  464 (485)
T KOG0569|consen  449 YLYRYLPETKGRTPYE  464 (485)
T ss_pred             HHHHhCcccCCCCHHH
Confidence            8888888888777666

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=96.23  E-value=0.56  Score=47.07  Aligned_cols=87  Identities=18%  Similarity=0.222  Sum_probs=73.3

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeecc-Cccchhh
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL-GWKVGFG  110 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~-g~~~~F~  110 (451)
                      ..+.+|.|-.++.+|.+....-+++++-+-|+        +|....-..|-.+.++|+.++..+++.+.++. ||+.+.+
T Consensus        98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp--------k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~  169 (395)
T COG2807          98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP--------KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALG  169 (395)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc--------cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHH
Confidence            56788899999999999988888888887776        35667778889999999999999999888887 7999988


Q ss_pred             HHHHHHHHHHHHHHhc
Q 013020          111 VPAVIMLLSALSFFLA  126 (451)
Q Consensus       111 i~~i~~~i~li~f~~g  126 (451)
                      .=++.-++++++.+-.
T Consensus       170 ~WAl~allAl~~WlPq  185 (395)
T COG2807         170 FWALLALLALLIWLPQ  185 (395)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            8788778888777665

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=96.20  E-value=0.085  Score=61.54  Aligned_cols=63  Identities=22%  Similarity=0.079  Sum_probs=58.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      .|+++++..-+++|+++.+..|...+.+.+..|++.++.++|+.....++|..+|+.+.+++.
T Consensus       106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~  168 (1140)
T PRK06814        106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLAT  168 (1140)
T ss_pred             hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            467788888999999999999999999999999999999999999999999999999888765

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.20  E-value=0.042  Score=57.93  Aligned_cols=95  Identities=18%  Similarity=0.151  Sum_probs=75.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCC
Q 013020          323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINK  402 (451)
Q Consensus       323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~  402 (451)
                      |.+-++...+++|+.|-...|..-.....-=.++.++..||+|+.+.++|+.+|+++...+.+.....+..+|       
T Consensus       133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW-------  205 (495)
T KOG2533|consen  133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW-------  205 (495)
T ss_pred             hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc-------
Confidence            3444777789999999999999999999999999999999999999999999999999886442222223456       


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHh
Q 013020          403 GHYDYYYWLLTALSMANFLYYLACC  427 (451)
Q Consensus       403 ~~~~~~f~~la~l~lv~~~~~~~~~  427 (451)
                         .+.|.+-|+++++.+++.++.-
T Consensus       206 ---~~~FiI~G~i~~~~gi~~f~~l  227 (495)
T KOG2533|consen  206 ---RWLFIIEGVITLVLGIVVFFFL  227 (495)
T ss_pred             ---eeehhHHHHHHHHHHheEEEEe
Confidence               4678888888888886554433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=96.20  E-value=0.22  Score=50.72  Aligned_cols=84  Identities=15%  Similarity=0.003  Sum_probs=65.1

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHH
Q 013020          282 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA  361 (451)
Q Consensus       282 i~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~  361 (451)
                      +.++.++.++++..+++..                   ...+++++...+++.++......|...+++.+..|++.|+.+
T Consensus        71 l~~~~~~~~l~~~~l~~~~-------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~  131 (402)
T PRK11902         71 LLLTQVGLAASIAAMAFCP-------------------PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAG  131 (402)
T ss_pred             HHHHHHHHHHHHHHHHhcC-------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHH
Confidence            5566666666666554431                   123566677777888899999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHhhhhc
Q 013020          362 STLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       362 ~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      .++.....++|..+++.+...+.
T Consensus       132 ~~~~~~g~~~g~i~g~~l~~~l~  154 (402)
T PRK11902        132 AAVKVLGYRLAMLVSGGLALWLA  154 (402)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHH
Confidence            99999888999999888766553

>PRK12382 putative transporter; Provisional

Probab=96.19  E-value=0.0087  Score=60.70  Aligned_cols=85  Identities=13%  Similarity=0.044  Sum_probs=70.3

Q ss_pred             hHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHHH
Q 013020           34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA  113 (451)
Q Consensus        34 ~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~~  113 (451)
                      ...+++..+.++|.|..-|...+...+.+++       ++|.+.+.+++...++|..+++.+.+++.+++||+..|.+.+
T Consensus       303 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~  375 (392)
T PRK12382        303 WVALAGAALTGAGCSLIFPALGVEVVKRVPS-------QVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGA  375 (392)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence            4556666777788887777777777776643       468899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 013020          114 VIMLLSALSFFL  125 (451)
Q Consensus       114 i~~~i~li~f~~  125 (451)
                      +..++++++.+.
T Consensus       376 ~~~~~~~~~~~~  387 (392)
T PRK12382        376 ISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHHHh
Confidence            888888777654

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=96.19  E-value=0.12  Score=54.58  Aligned_cols=116  Identities=10%  Similarity=0.044  Sum_probs=76.8

Q ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchh--h
Q 013020          281 RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM--S  358 (451)
Q Consensus       281 ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~--k  358 (451)
                      -+.+|.++.+++.+..++..                     .+.+++....++++++.-+..|....++.++.|++.  +
T Consensus        90 ~~~~g~~~~~ig~~l~~~~~---------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~  148 (500)
T PRK09584         90 VIMLGAIVLAIGYALVAWSG---------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRL  148 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHhc---------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhh
Confidence            35667777777665554321                     112334456778899999988988899999887543  3


Q ss_pred             hHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcCcc
Q 013020          359 SIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPF  433 (451)
Q Consensus       359 g~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~~~  433 (451)
                      +..+++++....+|..+++.+...+.+.-      +|          .+-|.+.++.+++..+.++...+.+++.
T Consensus       149 ~~~~~~~~~~~~iG~~~gp~i~g~l~~~~------g~----------~~~F~i~~i~~~i~~i~~~~~~~~~~~~  207 (500)
T PRK09584        149 DGAFTMYYMSINIGSFFSMLATPWLAAKY------GW----------SVAFALSVVGMLITVVNFAFCQRWVKQY  207 (500)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHhh------CH----------HHHHHHHHHHHHHHHHHHHHhHHHhccC
Confidence            45678888888999999988887664210      23          3455666666666666676666666543

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=96.03  E-value=0.26  Score=49.06  Aligned_cols=77  Identities=18%  Similarity=0.171  Sum_probs=53.6

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeee----------
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD----------  101 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~----------  101 (451)
                      +.+.++++..+.++|.+.+ +...++.+|.+++       ++|....+++....|+|..+++.+.+.+..          
T Consensus        90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~  161 (366)
T TIGR00886        90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPK-------KIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPA  161 (366)
T ss_pred             hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCH-------hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            4566777888888887665 4456788888764       356778888888888888887766655443          


Q ss_pred             ccCccchh-hHHHHHH
Q 013020          102 NLGWKVGF-GVPAVIM  116 (451)
Q Consensus       102 ~~g~~~~F-~i~~i~~  116 (451)
                      +.+|++.| .+.++..
T Consensus       162 ~~~w~~~~~~~~~~~~  177 (366)
T TIGR00886       162 HLAWGWAFVIVPAGIL  177 (366)
T ss_pred             cccccchhHHHHHHHH
Confidence            34899999 4434433

>PTZ00207 hypothetical protein; Provisional

Probab=96.01  E-value=0.22  Score=53.68  Aligned_cols=116  Identities=11%  Similarity=0.061  Sum_probs=82.8

Q ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhH
Q 013020          281 RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSI  360 (451)
Q Consensus       281 ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~  360 (451)
                      =+.+|.++.+++.+..++...         +       ....+++.+....++.|+|+.+..+.....+.+..| +.||.
T Consensus        93 vllig~ll~~iG~ll~ala~~---------~-------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~  155 (591)
T PTZ00207         93 IFVLSMTVFCLGTLLFALTFQ---------E-------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGA  155 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc---------c-------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHH
Confidence            456888888888887766421         1       012466767788899999999999999988888887 67899


Q ss_pred             HHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 013020          361 ASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY  430 (451)
Q Consensus       361 ~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y  430 (451)
                      ++|++....++|..+.+.+...+-..       +          ...+|++++++.++..++.+...+..
T Consensus       156 a~Gi~~~~~gLGsaI~~~l~~~l~~~-------~----------~~~~fl~l~vl~~vv~ll~~~~vr~p  208 (591)
T PTZ00207        156 VVAIMKTFTGLGSAILGSIQLAFFSD-------N----------TSAYFFFLMSFALVVGILAIVFMRLP  208 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------h----------HHHHHHHHHHHHHHHHHHHHhheeCC
Confidence            99999999999997644444332210       1          24567778888777776666655544

>TIGR00897 2A0118 polyol permease family

Probab=95.98  E-value=0.28  Score=49.98  Aligned_cols=112  Identities=15%  Similarity=-0.008  Sum_probs=72.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020          242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ  321 (451)
Q Consensus       242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~  321 (451)
                      +..++..+.-.+..|+..++.    .|.+       +.+-+.+|.++.+++.+.......                  ..
T Consensus        52 ~~~~~~~~~~~i~~~~~g~l~----dr~g-------~k~~l~~~~~~~~~~~~~~~~~~~------------------~~  102 (402)
T TIGR00897        52 SAFTLYGIAAAISAWISGVVA----EIIG-------PLKTMMIGLLLWCVGHAAFIVFGL------------------GH  102 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHcC-------cHHHHHHHHHHHHHHHHHHHHHhc------------------cC
Confidence            344555555666666666654    3321       112245666666666543322210                  01


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHH-HHHHHHhhh
Q 013020          322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAAN-LVASLIMNA  382 (451)
Q Consensus       322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~-~l~~~l~~~  382 (451)
                      .+++.++..+++.+++.....+.....+.+..|++.|+.++|++....++|. .+++.+...
T Consensus       103 ~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~  164 (402)
T TIGR00897       103 ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSY  164 (402)
T ss_pred             ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2455556678888999888888888888888999999999999999888886 466665543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.94  E-value=0.012  Score=59.45  Aligned_cols=107  Identities=20%  Similarity=0.194  Sum_probs=85.6

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhh
Q 013020           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG  110 (451)
Q Consensus        31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~  110 (451)
                      .++++++++-.+=++|.++...+-.++++|.|.++.      +|.+...+---.+.+|.++||-+.+.+-+..|+.+.|+
T Consensus       157 ~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~------er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFl  230 (464)
T KOG3764|consen  157 NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN------ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFL  230 (464)
T ss_pred             chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch------hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHH
Confidence            456788999999999999999999999999998763      47888888888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH-HHhcCccEeec--CCCCCchhHH
Q 013020          111 VPAVIMLLSALS-FFLASPFYVKS--KANTSLLPGL  143 (451)
Q Consensus       111 i~~i~~~i~li~-f~~g~~~~~~~--~p~~~~l~~~  143 (451)
                      +.++++++...+ ++.-.++-.++  .+++.|+.++
T Consensus       231 VL~~v~Lld~~L~l~vi~p~~~~~~~~~~~~~~~~L  266 (464)
T KOG3764|consen  231 VLAIVLLLDGALQLLVIEPTEMDPDSTEQGTPMWSL  266 (464)
T ss_pred             HHHHHHHHHHHHHHheeCccccCccccccCccHHHH
Confidence            998888777655 44444422222  3455565543

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=95.90  E-value=2.1  Score=44.70  Aligned_cols=83  Identities=12%  Similarity=-0.024  Sum_probs=54.4

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcc-------cC
Q 013020          282 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTE-------LP  354 (451)
Q Consensus       282 i~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~-------aP  354 (451)
                      +.+|.++.+++.+...+..                    .-+.++.+...++.++|-.+..+.--+++.+.       +-
T Consensus       305 ~~~~~~~~~i~~~~~~f~~--------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG  364 (467)
T COG2211         305 FLIGLLLLAVGYLLLYFTP--------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTG  364 (467)
T ss_pred             HHHHHHHHHHHHHHHHhhc--------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhC
Confidence            4566777777776665552                    13344455555677777777666666665543       45


Q ss_pred             chhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          355 KSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       355 ~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      ++..|..-|...+..=+|..+++.+..+.=
T Consensus       365 ~R~eGi~~s~~tF~~K~g~ala~~~~g~~L  394 (467)
T COG2211         365 VRREGIVYSGMTFFRKLGLALAGFIPGWIL  394 (467)
T ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677889989888887777777776665543

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=95.90  E-value=0.1  Score=54.51  Aligned_cols=157  Identities=13%  Similarity=0.023  Sum_probs=100.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020          242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ  321 (451)
Q Consensus       242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~  321 (451)
                      +....+++...+..|++.+. .   +|.      .+..+-+.+|.++++++-++...+|..                  +
T Consensus        75 ~viaa~slg~~i~~liF~~W-s---~k~------~~~k~Pli~s~ii~~~g~llY~~l~~~------------------~  126 (488)
T KOG2325|consen   75 LVIAASSLGHAIFSLIFGIW-S---NKT------GSVKKPLIVSFLIAIIGNLLYLALAYV------------------P  126 (488)
T ss_pred             HHHHHHHHHHHhcchhhccc-c---ccc------CCcccCHHHHHHHHHHHHHHHHHHHhc------------------c
Confidence            45566888889999999873 1   221      133444788999999988887666642                  2


Q ss_pred             c-hHHHHHHHHHHHHHH-HHHHhhhhHHHhhcccCchhhhHHHHHH--hHHHHHHHHHHHHHhhhhccccccCCCCCCCC
Q 013020          322 M-SAMWQLPYLVLSGLA-MAFNMIGQTEFYYTELPKSMSSIASTLS--GAGLSAANLVASLIMNAVDDITKRGGNGGWIP  397 (451)
Q Consensus       322 ~-s~~wli~~y~l~~ig-El~~~p~g~ef~~~~aP~~~kg~~~g~~--~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~  397 (451)
                      - +.++++..+++.|+| -.+..--.+--..+-.+++.|+++.+..  -++..+|-.++..+..+-++.      -.|++
T Consensus       127 ~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G------~~i~~  200 (488)
T KOG2325|consen  127 NGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKG------FMILP  200 (488)
T ss_pred             cchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCc------eEEcC
Confidence            2 678889999999999 6666667776666677888887776655  344445555555555443322      23455


Q ss_pred             -CCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcCccc
Q 013020          398 -SNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK  434 (451)
Q Consensus       398 -~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~~~~  434 (451)
                       -.+|......  |+.+++.++..++.....|--.+..
T Consensus       201 ~~~~n~YTap~--w~m~i~~i~~~v~i~~~f~E~~~~~  236 (488)
T KOG2325|consen  201 GLIFNMYTAPA--WLMAILWIIYIVIILFFFKEVYRGI  236 (488)
T ss_pred             cceEEecchHH--HHHHHHHHHHHHHHHhheeecccCc
Confidence             3455443333  4566677777766665555544333

>TIGR00883 2A0106 metabolite-proton symporter

Probab=95.76  E-value=0.12  Score=51.58  Aligned_cols=89  Identities=12%  Similarity=0.145  Sum_probs=65.3

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHH
Q 013020          282 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA  361 (451)
Q Consensus       282 i~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~  361 (451)
                      +.+|.++.+++.+..++....     ..         ......++++...+++|++.....+....++.+..|++.|+.+
T Consensus        68 l~~~~~~~~~~~~~~~~~~~~-----~~---------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~  133 (394)
T TIGR00883        68 LVITLLMMGIGTLLIGLLPSY-----AT---------IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFY  133 (394)
T ss_pred             HHHHHHHHHHHHHHHhhCCCh-----hh---------hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHH
Confidence            456777777766655544210     00         0012233466777999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHhhhhc
Q 013020          362 STLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       362 ~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      ++.+.....+|..+++.+.....
T Consensus       134 ~~~~~~~~~~G~~i~~~~~~~~~  156 (394)
T TIGR00883       134 GSFQQVGAPVGLLLAALTVLLLS  156 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888765543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=95.73  E-value=0.13  Score=54.21  Aligned_cols=89  Identities=11%  Similarity=0.137  Sum_probs=66.1

Q ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhH
Q 013020          281 RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSI  360 (451)
Q Consensus       281 ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~  360 (451)
                      -+.+++++.+++.+..++....-     .-|         ...+.+++..-+++|+++-...+.+..++.+..|++.||.
T Consensus        89 ~l~~~~~l~~i~~~~~a~~~~~~-----~~g---------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~  154 (490)
T PRK10642         89 ILAITIVIMSISTFCIGLIPSYA-----TIG---------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGF  154 (490)
T ss_pred             HHHHHHHHHHHHHHHHHhcccHH-----HHH---------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcH
Confidence            35677888887777766653110     000         1122346778899999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHhhhh
Q 013020          361 ASTLSGAGLSAANLVASLIMNAV  383 (451)
Q Consensus       361 ~~g~~~l~~aiG~~l~~~l~~~~  383 (451)
                      +++++.....+|..+++.+..++
T Consensus       155 ~~~~~~~~~~~G~~lg~~~~~~~  177 (490)
T PRK10642        155 MGSWLDFGSIAGFVLGAGVVVLI  177 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888888888887665443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=95.71  E-value=1.3  Score=45.27  Aligned_cols=93  Identities=10%  Similarity=0.016  Sum_probs=67.6

Q ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHH---HHHHHHHHHHHHHHHhhhhHHHhhcccCchh
Q 013020          281 RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMW---QLPYLVLSGLAMAFNMIGQTEFYYTELPKSM  357 (451)
Q Consensus       281 ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~w---li~~y~l~~igEl~~~p~g~ef~~~~aP~~~  357 (451)
                      -|-.|+++.+.+..++.+.-......    +  +   ....-++.|   ....|++.|+|=-......+++..+.+||+-
T Consensus        52 yI~~G~~~~~~g~~~ap~a~~~l~~~----~--~---~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~  122 (403)
T PF03209_consen   52 YIWGGTLLQAGGLAIAPFALLLLAES----G--Q---QSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER  122 (403)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHccc----c--c---ccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh
Confidence            35667777777776666554321110    0  0   011233444   3578999999999999999999999999999


Q ss_pred             hhHHHHHHhHHHHHHHHHHHHHhhh
Q 013020          358 SSIASTLSGAGLSAANLVASLIMNA  382 (451)
Q Consensus       358 kg~~~g~~~l~~aiG~~l~~~l~~~  382 (451)
                      |+...++-+...=+|..+++.+.+.
T Consensus       123 R~~~v~ivw~Mli~G~iv~ai~~g~  147 (403)
T PF03209_consen  123 RPRVVAIVWVMLIVGIIVSAIVFGR  147 (403)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888888888876654

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00806 rfc RFC reduced folate carrier

Probab=95.60  E-value=2  Score=45.13  Aligned_cols=82  Identities=11%  Similarity=0.026  Sum_probs=64.3

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhh-
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG-  110 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~-  110 (451)
                      +...+.+.-++.++|.|..- .....+..-+++       ++|.+..+++-.+.++|.++++.++++ -.++||+.=+- 
T Consensus       114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~-------kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~L  184 (511)
T TIGR00806       114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPP-------SRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTL  184 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHH
Confidence            46677778889999999988 888888888874       578999999999999999999998888 44678875443 


Q ss_pred             --HHHHHHHHHHHH
Q 013020          111 --VPAVIMLLSALS  122 (451)
Q Consensus       111 --i~~i~~~i~li~  122 (451)
                        |+...+.+++++
T Consensus       185 n~Isl~s~~~a~~~  198 (511)
T TIGR00806       185 NIISLVFMTFSVFL  198 (511)
T ss_pred             HHHHHHHHHHHHHH
Confidence              455556666554

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=95.55  E-value=0.16  Score=52.00  Aligned_cols=85  Identities=14%  Similarity=0.075  Sum_probs=59.0

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhccc-CchhhhH
Q 013020          282 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTEL-PKSMSSI  360 (451)
Q Consensus       282 i~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~a-P~~~kg~  360 (451)
                      +.+|.++.+++++.+....        ..        ......+|.+..+++.+++..+..+.-.+.....+ |++.|+.
T Consensus        73 i~~~~~~~~i~~~~~~~~~--------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~  136 (437)
T TIGR00792        73 LLIGAIPFSIVLVLLFTTP--------DF--------SATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERES  136 (437)
T ss_pred             HHHhHHHHHHHHHHHHhCC--------CC--------CcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHH
Confidence            5567666666665544321        00        01234678888889999999988887778877776 5788999


Q ss_pred             HHHHHhHHHHHHHHHHHHHhhh
Q 013020          361 ASTLSGAGLSAANLVASLIMNA  382 (451)
Q Consensus       361 ~~g~~~l~~aiG~~l~~~l~~~  382 (451)
                      ..+.......+|..+++.+...
T Consensus       137 ~~~~~~~~~~~g~~l~~~~~~~  158 (437)
T TIGR00792       137 LSTFRRFGATLGGLLVAVIVLP  158 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9998888778887777655433

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=95.48  E-value=0.04  Score=56.08  Aligned_cols=115  Identities=13%  Similarity=0.116  Sum_probs=89.2

Q ss_pred             CCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCc
Q 013020          276 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK  355 (451)
Q Consensus       276 ~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~  355 (451)
                      .+|-+=+++|++++++..+..++.                      .|++.+...+++.|.-+-.-.|.....++.--|+
T Consensus        91 ~npr~fm~~gLilsai~nil~Gfs----------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr  148 (448)
T COG2271          91 SNPRYFMAFGLILSAIVNILFGFS----------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSR  148 (448)
T ss_pred             CCCceeehHHHHHHHHHHHHHhhh----------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCc
Confidence            355666789999999999887655                      3667778889999999999999999999999999


Q ss_pred             hhhhHHHHHHhHHHHHHHHHHHHHhh--hhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 013020          356 SMSSIASTLSGAGLSAANLVASLIMN--AVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCK  428 (451)
Q Consensus       356 ~~kg~~~g~~~l~~aiG~~l~~~l~~--~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~  428 (451)
                      +.||...++|..+-.+|..+.+.++.  .+...      .+|          ..-|..=++++++.+++.+..-|
T Consensus       149 ~eRG~~~siWn~shNiGGal~~~~~~la~~~~~------~~w----------~~~f~~pgiiaiival~~~~~~r  207 (448)
T COG2271         149 KERGTWWSIWNTSHNIGGALAPLVALLAFFAFH------GGW----------RAAFYFPGIIAIIVALILLFLLR  207 (448)
T ss_pred             cccCceEEEehhhhhcccchHHHHHHHHHHHhc------cch----------hHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999998883  33211      034          23355567777766665554433

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=95.34  E-value=4.6  Score=42.70  Aligned_cols=81  Identities=14%  Similarity=0.059  Sum_probs=60.8

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +.+.+.+.-.+.+++.++.-.+...+++|.+.+       ++|...-++ +.....|+.+++...+|+-.  +|++-+.+
T Consensus       170 ~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~-------~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~  239 (521)
T KOG0255|consen  170 NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSP-------KQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWI  239 (521)
T ss_pred             cHHHHHHHHHHHHhhccchhHHhHhhheeecCc-------chhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHH
Confidence            445556666667777888888888888888875       356666666 78888888888888888776  89999998


Q ss_pred             HHHHHHHHHHH
Q 013020          112 PAVIMLLSALS  122 (451)
Q Consensus       112 ~~i~~~i~li~  122 (451)
                      ..+.-++.++.
T Consensus       240 ~~~~~~~~~~~  250 (521)
T KOG0255|consen  240 ISIPSGLFLLL  250 (521)
T ss_pred             HHHHHHHHHHH
Confidence            77776666555

>TIGR00896 CynX cyanate transporter

Probab=95.34  E-value=0.56  Score=46.71  Aligned_cols=108  Identities=13%  Similarity=0.174  Sum_probs=71.3

Q ss_pred             chhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccc
Q 013020          241 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  320 (451)
Q Consensus       241 ~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~  320 (451)
                      .+..+.+.+...+..|+..++.    +|.++|       +-+.+|+++.+++.+..  .                     
T Consensus        38 g~~~s~~~~~~~~~~~~~g~l~----dr~g~r-------~~~~~~~~~~~~~~~~~--~---------------------   83 (355)
T TIGR00896        38 GLLTALPVLCFAVLAPLAPWLA----RRFGEE-------RSVAAGLLLIAAGILIR--S---------------------   83 (355)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHH----HHhCch-------HHHHHHHHHHHHHHHHH--H---------------------
Confidence            3455667777777777777654    332221       22556666555544332  1                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020          321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  383 (451)
Q Consensus       321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~  383 (451)
                      ..+.++++...++.+++..+..+.....+.+..|+ .|+..+|++.....+|..+++.+....
T Consensus        84 ~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~~~~~~~l  145 (355)
T TIGR00896        84 APGTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-RVGLMTGLYSMALMGGAALAAAATVPL  145 (355)
T ss_pred             hccHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            02344455667889999988887777777777764 789999999888888888887766554

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00889 2A0110 nucleoside transporter

Probab=95.31  E-value=0.027  Score=58.06  Aligned_cols=85  Identities=11%  Similarity=0.087  Sum_probs=67.9

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHH-HHHHHHHHHHhhhhheeeec------cCc
Q 013020           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY-VFVSASSIVAVTCIVYIQDN------LGW  105 (451)
Q Consensus        33 ~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY-~~iNiGa~i~~~~~~~i~~~------~g~  105 (451)
                      ...+++...+.+++.|...+....++++.+++       ++|.+.+++++ +..++|+.+++.+.+++.++      +||
T Consensus       308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~-------~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~  380 (418)
T TIGR00889       308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPV-------HIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDW  380 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCch
Confidence            35567777888888888888888999998874       46788999997 56789999999999998877      469


Q ss_pred             cchhhHHHHHHHHHHHHHH
Q 013020          106 KVGFGVPAVIMLLSALSFF  124 (451)
Q Consensus       106 ~~~F~i~~i~~~i~li~f~  124 (451)
                      +..|.++++..+++.+.++
T Consensus       381 ~~~f~~~~~~~~i~~~l~~  399 (418)
T TIGR00889       381 QTMWLFFAGYIAILAVLFM  399 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999888777666655544

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=95.26  E-value=1  Score=47.10  Aligned_cols=118  Identities=16%  Similarity=0.124  Sum_probs=72.3

Q ss_pred             cccCchhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCc
Q 013020          237 EIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDL  316 (451)
Q Consensus       237 ~ip~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~  316 (451)
                      ++.++++..+..+..+... +.....-++..|.+.       -+-+.+++++.++..+..++...       +       
T Consensus        66 ~ls~~q~g~l~ai~~l~~a-l~rip~G~l~Dr~G~-------R~v~~~~~ll~~i~~~~~~~a~~-------~-------  123 (462)
T PRK15034         66 NFTTDQLFLLTALPSVSGA-LLRVPYSFMVPIFGG-------RRWTVFSTAILIIPCVWLGIAVQ-------N-------  123 (462)
T ss_pred             CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC-------hHHHHHHHHHHHHHHHHHHHHHc-------c-------
Confidence            4555555545554444333 222333444555432       22345666666666665554310       0       


Q ss_pred             cccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHh----HHHHHHHHHHHHHh
Q 013020          317 RAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSG----AGLSAANLVASLIM  380 (451)
Q Consensus       317 ~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~----l~~aiG~~l~~~l~  380 (451)
                         ...|++.++...++.|++ ....+.++..+....|++.||.++|++.    +...++..+.+.+.
T Consensus       124 ---~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i  187 (462)
T PRK15034        124 ---PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVI  187 (462)
T ss_pred             ---cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence               124677788889999998 5578889999999999999999999984    33444444444433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=95.22  E-value=0.52  Score=49.45  Aligned_cols=57  Identities=14%  Similarity=0.087  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhh
Q 013020          324 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMN  381 (451)
Q Consensus       324 ~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~  381 (451)
                      .+.++...+++|+++.... .....+.+..|++.||..+|++.....+|..+++.+..
T Consensus       124 ~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~  180 (476)
T PLN00028        124 ATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMP  180 (476)
T ss_pred             HHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556788999987644 34567788899999999999987655566666554443

>PRK10133 L-fucose transporter; Provisional

Probab=95.12  E-value=1.3  Score=45.87  Aligned_cols=110  Identities=13%  Similarity=-0.006  Sum_probs=75.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccc
Q 013020          243 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQM  322 (451)
Q Consensus       243 l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~  322 (451)
                      +.+...+...+..|+...+.    +|.+.       -+-+.+|+++.+++.+......                   ...
T Consensus        66 ~~~~~~~g~~i~~~~~g~l~----dr~G~-------r~~l~~g~~~~~~~~~l~~~~~-------------------~a~  115 (438)
T PRK10133         66 IQSAFYFGYFIIPIPAGILM----KKLSY-------KAGIITGLFLYALGAALFWPAA-------------------EIM  115 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHhCc-------HHHHHHHHHHHHHHHHHHHHHH-------------------hcC
Confidence            34455555666666665554    44322       1235677777777775532211                   124


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhh
Q 013020          323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNA  382 (451)
Q Consensus       323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~  382 (451)
                      ++++++...+++|+|..+..+....++.+.+|++.+...++++....++|..+++.+...
T Consensus       116 ~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~  175 (438)
T PRK10133        116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS  175 (438)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777888999999999999999999988888888777888888888888888777654

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=94.96  E-value=0.32  Score=51.05  Aligned_cols=115  Identities=12%  Similarity=0.146  Sum_probs=85.9

Q ss_pred             chhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhh
Q 013020          279 KLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMS  358 (451)
Q Consensus       279 ~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~k  358 (451)
                      -+-+.++.++.+++-+...+..                    ..+.+.++..-+++|++|-...|.--....+=+|+..|
T Consensus       103 r~v~~~~~~~sa~~t~l~P~aa--------------------~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Er  162 (466)
T KOG2532|consen  103 RRVFFISGLISALLTLLTPLAA--------------------SIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNER  162 (466)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH--------------------HhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHH
Confidence            3456788888887777666553                    24444567788999999999999999999999999999


Q ss_pred             hHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 013020          359 SIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCK  428 (451)
Q Consensus       359 g~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~  428 (451)
                      +...++.+...-+|+.++-.+++..-+.+     -||          +.-|.+.|+++++-.++++...+
T Consensus       163 s~~~ail~~g~q~g~v~~mp~sg~lc~s~-----~GW----------~sifY~~g~~g~i~~~~w~~~~~  217 (466)
T KOG2532|consen  163 STFIAILTAGSQLGTIITMPVSGLLCESS-----LGW----------PSIFYVFGIVGLIWFILWFLFYS  217 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHhccC-----CCC----------chHHHHHHHHHHHHHHHHHHHhc
Confidence            99999998888888888877666654321     267          23455677777776666655544

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=94.84  E-value=0.096  Score=56.24  Aligned_cols=214  Identities=15%  Similarity=0.125  Sum_probs=116.2

Q ss_pred             hHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhHHH
Q 013020           34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA  113 (451)
Q Consensus        34 ~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~~  113 (451)
                      ...|+...+..-+ +..++|++.+.|+++..+...   ..+.-.|..+|+.||+++++..+.            .|+++.
T Consensus        60 lv~ylt~~~~~~~-~~aa~~v~~f~G~~~~~~l~g---~~laD~f~gry~tI~~~s~i~~~G------------~~~lt~  123 (571)
T KOG1237|consen   60 LVTYLTLELHASG-GGAANNVNAFGGTQFLLPLLG---AFLADSFLGRYFTINIGSLISLLG------------LFGLTL  123 (571)
T ss_pred             HHHHHHHHhccch-HHHHHHHHHHhhHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHH------------HHHHHH
Confidence            3455666666666 889999999999999885432   467788999999999999998754            667777


Q ss_pred             HHHHHHHHHHHhcCccEeecC-CCCCchhHHHHHHHHHHHhcCCCCCC-cccchhhccCCCccccCCCCchhhhhhhhhh
Q 013020          114 VIMLLSALSFFLASPFYVKSK-ANTSLLPGLTQVLVASFKNRRTKLPT-QATEEMYHHGKGSMRLMPSENLRFLNKACMA  191 (451)
Q Consensus       114 i~~~i~li~f~~g~~~~~~~~-p~~~~l~~~~~vl~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~  191 (451)
                      ..++.++..+-+   .+.... ..++|-+....++..++......... +++..-+.          .+++.-.+.-.. 
T Consensus       124 ~a~~~~l~p~~~---~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fG----------adQfd~~~~~~~-  189 (571)
T KOG1237|consen  124 SAMIPALLPFMC---KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFG----------ADQFDELDPVEV-  189 (571)
T ss_pred             HHHhhhcCCccc---cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhc----------ccccCccCcchh-
Confidence            777766655443   111111 12223333333444444332111100 00000000          011110000000 


Q ss_pred             cCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHhhccC-cCCCCccccCchhhhhHHHHHHHHHHHHHHHHhhhhhhcc
Q 013020          192 KHPEQDLTPDGRASNPNSLCTVEQVEELKALIKASSMDR-HVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIK  270 (451)
Q Consensus       192 ~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~~md~-~~~~g~~ip~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~  270 (451)
                              ........|..++ .+....-  .+...++. ... +|.+-++..+..|.+.+++|.|....+.++.     
T Consensus       190 --------~~~~~fFnW~yf~-~~~g~l~--a~t~~vyiq~~~-~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~-----  252 (571)
T KOG1237|consen  190 --------KGIPSFFNWFYFS-QNGGALL--AQTVLVYIQDNV-GWKLGFGIPTVLNALAILIFLPGFPFYRYKK-----  252 (571)
T ss_pred             --------hCcccchhHHHHH-HHHHHHH--HHHHHHhhhhcc-cceeeccHHHHHHHHHHHHHHcCceeEEeeC-----
Confidence                    0001234454332 2222111  11122222 112 6888888999999999999988877654332     


Q ss_pred             CCCCCCCcchhhhHhHHHHHHHHHHHHHH
Q 013020          271 GKPCQLSLKLRMGIGLLFSTASMTAWAIV  299 (451)
Q Consensus       271 ~~~~~~s~~~ki~iG~~l~~~s~lv~~~~  299 (451)
                        +.| +  .+..+|.++.+++.-..+..
T Consensus       253 --p~g-s--p~t~i~~Vlvaa~~k~~~~~  276 (571)
T KOG1237|consen  253 --PRG-S--PKTRIGQVLVAAAFKRKAVV  276 (571)
T ss_pred             --CCC-C--chhHHHHHHHHHHHHHhccC
Confidence              222 3  67788888888888765544

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=94.74  E-value=2.4  Score=43.16  Aligned_cols=67  Identities=9%  Similarity=-0.038  Sum_probs=50.8

Q ss_pred             CCccchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeee
Q 013020           28 ATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD  101 (451)
Q Consensus        28 ~~~~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~  101 (451)
                      +......++..+|.+++.|.|..+....++++..-++...    .+|-   |.---..-+|+.++|.+.+++-.
T Consensus        99 a~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a----~~rl---nl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738          99 ASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESA----AFRL---NLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             hhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhH----HHHH---HHHHHhhhhHHHHHHHHHHHHHH
Confidence            3445678888899999999999999999999999886533    2333   33444456899999988776544

>PRK15011 sugar efflux transporter B; Provisional

Probab=94.63  E-value=1.2  Score=45.26  Aligned_cols=89  Identities=10%  Similarity=-0.108  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhh--hHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCC
Q 013020          324 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMS--SIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNIN  401 (451)
Q Consensus       324 ~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~k--g~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln  401 (451)
                      .+++.....+.+..+....|.....+.+..|++-|  +.+.+......++|..+++.+...+.+.-      +|      
T Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~------gw------  172 (393)
T PRK15011        105 YFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF------SF------  172 (393)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc------Ch------
Confidence            34443344555555667788888888777666533  45667777778888888888877664211      44      


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHhh
Q 013020          402 KGHYDYYYWLLTALSMANFLYYLACCK  428 (451)
Q Consensus       402 ~~~~~~~f~~la~l~lv~~~~~~~~~~  428 (451)
                          ..-|+..+++.++..+..+...|
T Consensus       173 ----~~~f~~~~~~~~~~~~~~~~~~~  195 (393)
T PRK15011        173 ----TVMYLSAAVAFIVCGVMVWLFLP  195 (393)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHhhcC
Confidence                34566677666666555444333

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=94.47  E-value=1.1  Score=47.83  Aligned_cols=115  Identities=13%  Similarity=0.087  Sum_probs=78.4

Q ss_pred             CchhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccc
Q 013020          240 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAV  319 (451)
Q Consensus       240 ~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~  319 (451)
                      .+.++....+..+++.|+-..+..++-||+           -+..+-++.++..+++++....        |        
T Consensus        47 valv~~a~~LP~~Llsl~aG~laDr~drrr-----------ili~~~~~~~~~~~~L~~l~~~--------~--------   99 (524)
T PF05977_consen   47 VALVQAASTLPILLLSLFAGALADRFDRRR-----------ILILSQLLRALVALLLAVLAFF--------G--------   99 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccchH-----------HHHHHHHHHHHHHHHHHHHHHh--------C--------
Confidence            445677788888888887776654432221           1233333333333333333210        1        


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhh
Q 013020          320 VQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNA  382 (451)
Q Consensus       320 ~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~  382 (451)
                       .+++|.++..-++.+++..+..|.-.+.+-++.|++.-..+.++......++..+|+.+.+.
T Consensus       100 -~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~  161 (524)
T PF05977_consen  100 -LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGI  161 (524)
T ss_pred             -cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHH
Confidence             47788788888999999999999999999999999988888887777777666666655554

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK09952 shikimate transporter; Provisional

Probab=94.39  E-value=0.54  Score=48.70  Aligned_cols=110  Identities=9%  Similarity=0.092  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHH
Q 013020          253 IWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLV  332 (451)
Q Consensus       253 i~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~  332 (451)
                      +..|+-..+.-++..|.++       .+-+.+++++.+++.+..++....     ..         ....+++.++..-+
T Consensus        75 ~~~~~g~~~~G~l~Dr~Gr-------r~~l~~~~~~~~~~~~~~~~~~~~-----~~---------~~~~~~~~l~~~R~  133 (438)
T PRK09952         75 LFRPLGGVVFGHFGDRLGR-------KRMLMLTVWMMGIATALIGLLPSF-----ST---------IGWWAPVLLVTLRA  133 (438)
T ss_pred             HHHhhHHHHHHHHHHhhcc-------HHHHHHHHHHHHHHHHHHhcCCcH-----HH---------HHHHHHHHHHHHHH
Confidence            3345555555555555432       223556777777666655544210     00         00012334666778


Q ss_pred             HHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020          333 LSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  383 (451)
Q Consensus       333 l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~  383 (451)
                      ++|+++-...|....++.+.+|++.||.+++......++|..++..+...+
T Consensus       134 l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l  184 (438)
T PRK09952        134 IQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLI  184 (438)
T ss_pred             HHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998999998887665544

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=94.29  E-value=1  Score=47.59  Aligned_cols=85  Identities=9%  Similarity=0.075  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHhhhhHHHhhcccCch--hhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHH
Q 013020          331 LVLSGLAMAFNMIGQTEFYYTELPKS--MSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYY  408 (451)
Q Consensus       331 y~l~~igEl~~~p~g~ef~~~~aP~~--~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~  408 (451)
                      ..+..+|--+..+....++.++-|++  .|+...++.+....+|..+++.+...+.+..      +|          ..-
T Consensus       107 l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~------Gw----------~~~  170 (493)
T PRK15462        107 LAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY------SW----------AMG  170 (493)
T ss_pred             HHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh------Ch----------HHH
Confidence            34455666666676677888888875  6888899999888899999998887764211      33          344


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcC
Q 013020          409 YWLLTALSMANFLYYLACCKAYG  431 (451)
Q Consensus       409 f~~la~l~lv~~~~~~~~~~~y~  431 (451)
                      |...++.+++..+.++...|++.
T Consensus       171 F~iaaigm~l~li~~~~~~~~l~  193 (493)
T PRK15462        171 FGLAAVGMIAGLVIFLCGNRHFT  193 (493)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhc
Confidence            55555556666666655555554

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=94.24  E-value=7.5  Score=40.75  Aligned_cols=59  Identities=12%  Similarity=-0.103  Sum_probs=41.7

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 013020           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIV   97 (451)
Q Consensus        31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~   97 (451)
                      .+...+++.-.+.++| |..-+.....+++.|++       +++..+..++-..-|+|..++..+.+
T Consensus       126 ~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~-------~~rG~A~Gi~~g~G~~G~~l~~~l~p  184 (462)
T PRK15034        126 TPFGIFIVIALLCGFA-GANFASSMGNISFFFPK-------AKQGSALGINGGLGNLGVSVMQLVAP  184 (462)
T ss_pred             CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCH-------hHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3466777777888888 55557778888888875       35777888886677777766554443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=94.23  E-value=0.33  Score=49.11  Aligned_cols=127  Identities=8%  Similarity=-0.013  Sum_probs=85.3

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCch---hh
Q 013020          282 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS---MS  358 (451)
Q Consensus       282 i~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~---~k  358 (451)
                      +.+|.++..++.+++.+...      +. ..      ....+...+.....++++|.-++-|....+..+|-+++   .+
T Consensus         4 I~~g~~~~~~G~~ll~l~~~------~~-~~------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~   70 (372)
T PF00854_consen    4 ILLGSIVYLLGHVLLTLSAI------PP-SL------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRR   70 (372)
T ss_dssp             HHHHHHHHHHHHHH--HHHT------SS-SC------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHH
T ss_pred             hhHHHHHHHHHHHHhHHHHh------cc-hh------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhh
Confidence            56788888888877655531      00 00      12345566777788999999999999999999997766   34


Q ss_pred             hHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcCcccCCC
Q 013020          359 SIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRV  437 (451)
Q Consensus       359 g~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~~~~~~~  437 (451)
                      ......++....+|..++..+...+.+-      .+          ....|++-++.++++.+.|+...++|+++.+..
T Consensus        71 ~~~F~~fY~~in~G~~~~~~~~~~i~~~------~~----------~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~  133 (372)
T PF00854_consen   71 DSFFNWFYWGINIGSLFSPTLVPYIQQN------YG----------WFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPG  133 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCHHHHC------S-----------HHHHHHHHHHHHHHHHHHHHCCCCTT--S----
T ss_pred             hhhHHHHHHHHhhhhHhhcccchhhccc------cc----------hhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccC
Confidence            5555667888899999998777666521      12          456788888899999999999999998874443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=94.20  E-value=0.0093  Score=63.67  Aligned_cols=151  Identities=13%  Similarity=0.051  Sum_probs=3.0

Q ss_pred             CcchhhhHhHHHHHHHHHHHHHHHHHHH----Hhhh-----h---cCCC------------CCc----cccccchHHHHH
Q 013020          277 SLKLRMGIGLLFSTASMTAWAIVEAARR----SIAI-----N---EGIS------------DDL----RAVVQMSAMWQL  328 (451)
Q Consensus       277 s~~~ki~iG~~l~~~s~lv~~~~e~~~~----~~~~-----~---~g~~------------~~~----~~~~~~s~~wli  328 (451)
                      +.++-+++|.++.+++.++.++-+..--    ....     +   ..+-            +++    ......-+++++
T Consensus        66 hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  145 (539)
T PF03137_consen   66 HRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFI  145 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHH
Confidence            4467799999999999999886644211    0000     0   0000            000    111122345667


Q ss_pred             HHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHH----HHHHHHhhhhcccccc--------CCCCCCC
Q 013020          329 PYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAAN----LVASLIMNAVDDITKR--------GGNGGWI  396 (451)
Q Consensus       329 ~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~----~l~~~l~~~~~~~s~~--------~~~~~w~  396 (451)
                      ...+++|+|..-+++.|.+++.+.++++..++++|+.+....+|-    .+|+.+.+++-+....        .++..|+
T Consensus       146 ~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~Wv  225 (539)
T PF03137_consen  146 LGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWV  225 (539)
T ss_dssp             ------SSS-----------------------------------------------------------------------
T ss_pred             HHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHH
Confidence            778999999999999999999999999999999999998776665    4445555454333221        1122333


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcCcc
Q 013020          397 PSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPF  433 (451)
Q Consensus       397 ~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~~~  433 (451)
                      ..      -=.=|.+.+.+.++.++-++.+=|++.+.
T Consensus       226 GA------WWLGfli~g~~~~l~aipl~~FPk~lp~~  256 (539)
T PF03137_consen  226 GA------WWLGFLICGILLFLSAIPLFFFPKKLPGT  256 (539)
T ss_dssp             -------------------------------------
T ss_pred             HH------HHHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence            10      00113456677777777777666666655

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR01272 gluP glucose/galactose transporter

Probab=93.88  E-value=0.35  Score=47.74  Aligned_cols=63  Identities=13%  Similarity=0.010  Sum_probs=57.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      -|..+.+..+++++.|-.+.-++...++....|++.++..+++-....++|..+++.+.+.+-
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i   70 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI   70 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            467778899999999999999999999999999989999999999999999999999888654

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.70  E-value=0.33  Score=53.05  Aligned_cols=152  Identities=12%  Similarity=0.040  Sum_probs=95.2

Q ss_pred             CcchhhhHhHHHHHHHHHHHHHHHHH----HHHhhh-----hc----------CCCCC------ccc---cccch-HH-H
Q 013020          277 SLKLRMGIGLLFSTASMTAWAIVEAA----RRSIAI-----NE----------GISDD------LRA---VVQMS-AM-W  326 (451)
Q Consensus       277 s~~~ki~iG~~l~~~s~lv~~~~e~~----~~~~~~-----~~----------g~~~~------~~~---~~~~s-~~-w  326 (451)
                      +-++-|++|+++.+++.++.++.+..    +.+...     ++          +..++      .+.   ...-+ +| .
T Consensus       160 HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  239 (735)
T KOG3626|consen  160 HRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLL  239 (735)
T ss_pred             CccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHH
Confidence            55677999999999999998877542    111110     00          00000      011   11222 22 3


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHH----HHHHHHHHHHhhhhccc-cccCCCCCCCCCCCC
Q 013020          327 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGL----SAANLVASLIMNAVDDI-TKRGGNGGWIPSNIN  401 (451)
Q Consensus       327 li~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~----aiG~~l~~~l~~~~~~~-s~~~~~~~w~~~~ln  401 (451)
                      ++..-++.|+|+.-+.+.|.+++.+.+-++-..++.|+.+...    ++|..+|+++..++.+. ...      ...+-+
T Consensus       240 ff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~------~~it~~  313 (735)
T KOG3626|consen  240 FFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSP------IGITPT  313 (735)
T ss_pred             HHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCC------CCCCCC
Confidence            4567799999999999999999999999999999999888665    45666666666666554 110      011222


Q ss_pred             CcchhH----HHHHHHHHHHHHHHHHHHHhhhcCccc
Q 013020          402 KGHYDY----YYWLLTALSMANFLYYLACCKAYGPFK  434 (451)
Q Consensus       402 ~~~~~~----~f~~la~l~lv~~~~~~~~~~~y~~~~  434 (451)
                      |.+-.-    =|.+.++++++..+-++.+-|.+.+..
T Consensus       314 DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~  350 (735)
T KOG3626|consen  314 DPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQ  350 (735)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcccc
Confidence            333222    234667788888887777777776543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=93.53  E-value=6.2  Score=42.68  Aligned_cols=86  Identities=9%  Similarity=0.049  Sum_probs=53.1

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhh
Q 013020           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFG  110 (451)
Q Consensus        31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~  110 (451)
                      .+...+..|.++.++|.|... .....++|..+.       +.|..++.+..+..-+...+++.+...+..+.+|+|.|.
T Consensus       129 ~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~-------k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~  200 (599)
T PF06609_consen  129 QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPN-------KWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFY  200 (599)
T ss_pred             CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhccc-------chhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHH
Confidence            445668889999999987765 345556777642       233333333333322333334444444455679999999


Q ss_pred             HHHHHHHHHHHHHH
Q 013020          111 VPAVIMLLSALSFF  124 (451)
Q Consensus       111 i~~i~~~i~li~f~  124 (451)
                      +.++...++++..+
T Consensus       201 ~~~i~~~i~~vl~~  214 (599)
T PF06609_consen  201 IFIIWSGIALVLIF  214 (599)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99998888766543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=93.41  E-value=4  Score=43.26  Aligned_cols=83  Identities=18%  Similarity=0.271  Sum_probs=60.4

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeec-cCccchhh
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-LGWKVGFG  110 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~-~g~~~~F~  110 (451)
                      +...+++|-.+.++|.|+.--.++.+.++.-++       +.|...-+.+.+.+++|.+++..+....++. ++|+..++
T Consensus       141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~-------~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~  213 (513)
T KOG0254|consen  141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPA-------HIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLG  213 (513)
T ss_pred             hHHHHHHHHHHhccchhhhhhcchhhHhhcCCh-------hhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHH
Confidence            668899999999999999986666666654432       3577778889999999999996554444443 58998877


Q ss_pred             HHHHHHHHHHH
Q 013020          111 VPAVIMLLSAL  121 (451)
Q Consensus       111 i~~i~~~i~li  121 (451)
                      +..+.-++-.+
T Consensus       214 ~~~i~~~~~~~  224 (513)
T KOG0254|consen  214 LALIPAVILAL  224 (513)
T ss_pred             HHHHHHHHHHH
Confidence            76554444433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=93.34  E-value=1.6  Score=44.90  Aligned_cols=108  Identities=12%  Similarity=0.031  Sum_probs=73.2

Q ss_pred             HHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHH
Q 013020          255 IGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLS  334 (451)
Q Consensus       255 ~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~  334 (451)
                      .|+-..+.-++..|.++|       +-+.+++++.+++.+..++....        .      .....+..+++..-+++
T Consensus        76 ~~ig~~~~G~l~Dr~Grr-------~~l~~~~~~~~~~~~~~~~~~~~--------~------~~~~~~~~~l~~~R~l~  134 (432)
T PRK10406         76 RPIGGWLFGRIADKHGRK-------KSMLISVCMMCFGSLVIACLPGY--------E------TIGTWAPALLLLARLFQ  134 (432)
T ss_pred             HHHHHHHHHHHHHhcCcH-------HHHHHHHHHHHHHHHHHhhcCCc--------h------hHHHHHHHHHHHHHHHH
Confidence            344444555555654332       23566777777666655543210        0      00013455677788999


Q ss_pred             HHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020          335 GLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  383 (451)
Q Consensus       335 ~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~  383 (451)
                      |+++-...|....++.+.+|++.||.+++++......|..++..+...+
T Consensus       135 G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~  183 (432)
T PRK10406        135 GLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVL  183 (432)
T ss_pred             HhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998888878877776654443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=93.23  E-value=2.2  Score=44.84  Aligned_cols=58  Identities=17%  Similarity=0.127  Sum_probs=51.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHh
Q 013020          323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIM  380 (451)
Q Consensus       323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~  380 (451)
                      +.-.++..-++.|+..-+......=|....||++.||.+-.+..+...+|..++..++
T Consensus       115 ~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~  172 (485)
T KOG0569|consen  115 SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLG  172 (485)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            3444778889999999999999999999999999999999999999999999986654

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=92.98  E-value=1.9  Score=45.77  Aligned_cols=104  Identities=13%  Similarity=0.022  Sum_probs=81.4

Q ss_pred             chhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccc
Q 013020          241 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  320 (451)
Q Consensus       241 ~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~  320 (451)
                      +|+.+...+...+..++..++...+-||.           -+.++.++..++.++.++.                     
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~-----------~l~~~~~~~~iG~ii~~~a---------------------  139 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRKK-----------TLLLAVVLFLIGAIIIALA---------------------  139 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----------HHHHHHHHHHHHHHHHHHh---------------------
Confidence            57777777777777777777654444432           2556666666666555443                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHH
Q 013020          321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVAS  377 (451)
Q Consensus       321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~  377 (451)
                       .++.+++..-++.|+|=-+.+....-+....+|++.||.+..+..+...+|-.++-
T Consensus       140 -~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~  195 (513)
T KOG0254|consen  140 -PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGY  195 (513)
T ss_pred             -hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHH
Confidence             36888999999999999999999999999999999999999999999998888883

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=92.97  E-value=4.8  Score=42.23  Aligned_cols=84  Identities=10%  Similarity=0.069  Sum_probs=69.1

Q ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhH
Q 013020          281 RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSI  360 (451)
Q Consensus       281 ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~  360 (451)
                      =+.+|+..-.++.++.++...                       -|++-...+....-.+..|...+++.+++.++-+|.
T Consensus       310 ~i~lGl~~~~~~~~~~af~~~-----------------------~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~  366 (463)
T KOG2816|consen  310 LISLGLLSEFLQLLLFAFATE-----------------------TWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGK  366 (463)
T ss_pred             HhhHHHHHHHHHHHHHHHhcc-----------------------chhhhHHHHHHHhhcchhHHHHhHHHhhcccccccc
Confidence            467888888888888887752                       145555666777778899999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHhhhhcccc
Q 013020          361 ASTLSGAGLSAANLVASLIMNAVDDIT  387 (451)
Q Consensus       361 ~~g~~~l~~aiG~~l~~~l~~~~~~~s  387 (451)
                      .+++.....++.+.+++.+.+.+...+
T Consensus       367 v~~~is~i~~l~~~~~~~~~~~i~~~t  393 (463)
T KOG2816|consen  367 VFGIISGIEGLSGVVSPALYGNIFALT  393 (463)
T ss_pred             hhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            999999999999999998877765544

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=92.78  E-value=4.2  Score=41.02  Aligned_cols=85  Identities=15%  Similarity=0.122  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCc
Q 013020          324 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKG  403 (451)
Q Consensus       324 ~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~  403 (451)
                      .+|++....+.++......+....+..+..+++.++.+.+.......+|..+++.......+..      +|        
T Consensus        97 ~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~------gw--------  162 (390)
T TIGR02718        97 AGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF------GQ--------  162 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CH--------
Confidence            4455555566667777777777778888888888888888888877888888886554432211      34        


Q ss_pred             chhHHHHHHHHHHHHHHHHHH
Q 013020          404 HYDYYYWLLTALSMANFLYYL  424 (451)
Q Consensus       404 ~~~~~f~~la~l~lv~~~~~~  424 (451)
                        ..-|+..+++.++..+..+
T Consensus       163 --~~~f~~~a~l~~~~~~~~~  181 (390)
T TIGR02718       163 --RPAFLLVACVPLASLVCVL  181 (390)
T ss_pred             --HHHHHHHHHHHHHHHHHHH
Confidence              3356677777766655543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=91.48  E-value=3.2  Score=42.03  Aligned_cols=55  Identities=5%  Similarity=-0.098  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020          327 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  383 (451)
Q Consensus       327 li~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~  383 (451)
                      .+...++.+++.....|...+++.+..+++  +..+|......++|..+++.+....
T Consensus       102 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~g~~~g~~~~g~l  156 (396)
T TIGR00882       102 AIVGGLYLGFVFSAGAGAIEAYIEKVSRNS--NFEYGKARMFGCVGWALCASIAGIL  156 (396)
T ss_pred             HHHHHHHHHHHhccchhhHHHHHHHhhhhc--ccccchhhhhcccHHHHHHHHHhhh
Confidence            455667888888888888888877765543  3444555555566666766666554

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=91.03  E-value=5.2  Score=35.37  Aligned_cols=61  Identities=11%  Similarity=0.081  Sum_probs=53.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020          323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  383 (451)
Q Consensus       323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~  383 (451)
                      +.+.++|.-++.|+|+.+++...-.+..+.+.++.++...|+++.....+..+|+.+.-.+
T Consensus        88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen   88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566889999999999999999999999999999999999999988888888877665443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=90.89  E-value=0.9  Score=45.99  Aligned_cols=81  Identities=11%  Similarity=0.087  Sum_probs=60.8

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHH
Q 013020          282 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA  361 (451)
Q Consensus       282 i~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~  361 (451)
                      +.+|.+..++++++.+...                      +...++..-++.|+..-.++ ..-+.+.+.++++.|++.
T Consensus       101 ll~c~~~va~s~ll~~~S~----------------------~F~afv~aR~l~Gi~kgnl~-v~rAiisdV~sek~r~l~  157 (451)
T KOG2615|consen  101 LLACLIGVALSYLLWALSR----------------------NFAAFVLARFLGGIFKGNLS-VIRAIISDVVSEKYRPLG  157 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHhhhhccCchH-HHHHHHHhhcChhhccce
Confidence            5567777777776655442                      12224444667777777776 457889999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHhhhhcc
Q 013020          362 STLSGAGLSAANLVASLIMNAVDD  385 (451)
Q Consensus       362 ~g~~~l~~aiG~~l~~~l~~~~~~  385 (451)
                      |+....+.++|..+|+++.+....
T Consensus       158 ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  158 MSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             eeeeehhhhcchhhcchhhhHHHh
Confidence            999999999999999998877654

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=90.08  E-value=3.2  Score=42.11  Aligned_cols=58  Identities=12%  Similarity=-0.019  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          327 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       327 li~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      +-..-.+.+++-+...+....++.+..|.+.||..+|+.....+++..+|+.+.+...
T Consensus       355 l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~  412 (451)
T KOG2615|consen  355 LYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF  412 (451)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence            4445678889999999999999999999999999999999999999999998885554

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=89.92  E-value=8.8  Score=39.57  Aligned_cols=92  Identities=10%  Similarity=0.083  Sum_probs=64.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHH-hHHHHHHHHHHHHHhhhhccccccCCCCCCCCCC
Q 013020          321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLS-GAGLSAANLVASLIMNAVDDITKRGGNGGWIPSN  399 (451)
Q Consensus       321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~-~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~  399 (451)
                      ..+++|+++.-.++++---+.....+-++++..|+++.++...+. .++.++|..+.+.+.+...+.-            
T Consensus       309 ~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~------------  376 (412)
T PF01306_consen  309 ATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI------------  376 (412)
T ss_dssp             --SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH------------
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc------------
Confidence            467788888889999988899999999999999999998888775 4777888877666655544311            


Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 013020          400 INKGHYDYYYWLLTALSMANFLYYLACCK  428 (451)
Q Consensus       400 ln~~~~~~~f~~la~l~lv~~~~~~~~~~  428 (451)
                          .....|++++++.++..++=...-+
T Consensus       377 ----G~~~tylimg~iv~~~~li~~f~l~  401 (412)
T PF01306_consen  377 ----GFQHTYLIMGLIVLPFTLISAFTLK  401 (412)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred             ----CcHHHHHHHHHHHHHHHHHheeeec
Confidence                1234577888776665554444333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.90  E-value=28  Score=36.47  Aligned_cols=165  Identities=12%  Similarity=0.018  Sum_probs=95.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCC--CCcccc
Q 013020          242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGIS--DDLRAV  319 (451)
Q Consensus       242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~--~~~~~~  319 (451)
                      .+..++.+.+-+..-+....+.++.||. ++   +.-..-+.+|.++.-++++..-+.      ..++..+.  +++...
T Consensus       279 ~~~ai~~~~~g~g~v~~g~~~~~l~~ri-r~---fg~~~~~~~~~~~~~~~~~li~l~------~p~dap~~~t~~~~~~  348 (461)
T KOG3098|consen  279 YLIAIYSIGIGLGEVIGGLDFSILSKRI-RG---FGRKPTVLIGIIIHLIGFLLIHLS------FPNDAPLRPTDSPPLL  348 (461)
T ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHhhhh-hh---cccCcchhHHHHHHHHHHHHHhcc------ccccCCCCCCcccccc
Confidence            3455566665555555444444444443 22   222333455555544444332111      11111111  111112


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCC
Q 013020          320 VQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSN  399 (451)
Q Consensus       320 ~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~  399 (451)
                      ..-+...-..-++++|+++.+.-..-+..+....| +-+..+-.++-+..++++-++.......                
T Consensus       349 ~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~~~----------------  411 (461)
T KOG3098|consen  349 FTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSPYL----------------  411 (461)
T ss_pred             cccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhhhh----------------
Confidence            23344344556799999999999999999999984 4455788888888888887765433221                


Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHhhhcCcccCCC
Q 013020          400 INKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRV  437 (451)
Q Consensus       400 ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~~~~~~~  437 (451)
                          .+..+.+.+.+++.+..++++..+++++..+++.
T Consensus       412 ----~l~~~~l~~~i~~~i~~~~~~~~~~~~~~~~~k~  445 (461)
T KOG3098|consen  412 ----LLYIYTLGLPIFCVIATTIFFIVAERTQAMEKKL  445 (461)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                2345556777888888888888888886555444

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=89.71  E-value=3.4  Score=42.88  Aligned_cols=83  Identities=24%  Similarity=0.270  Sum_probs=53.6

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhc---ccCchhh
Q 013020          282 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYT---ELPKSMS  358 (451)
Q Consensus       282 i~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~---~aP~~~k  358 (451)
                      +.+|.++.+++.+.++....                  ...|........++.++|.++..+..-..+..   +-|++ +
T Consensus        62 ~~i~~~~~~~~~~~~~~~~~------------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~  122 (433)
T PF03092_consen   62 MIIGWLLGAVSALVLALLPA------------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-R  122 (433)
T ss_pred             HHHHHHHHHHHHHHHHhccc------------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-h
Confidence            56677766666665554421                  01223333445566777777777776666555   34666 8


Q ss_pred             hHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020          359 SIASTLSGAGLSAANLVASLIMNAV  383 (451)
Q Consensus       359 g~~~g~~~l~~aiG~~l~~~l~~~~  383 (451)
                      |-.+...+...++|+.++..+++..
T Consensus       123 g~lqS~~~~~~~~G~lv~~~l~G~l  147 (433)
T PF03092_consen  123 GDLQSFVWGVRSVGSLVGSLLSGPL  147 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            8889888888899999888777554

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK09528 lacY galactoside permease; Reviewed

Probab=89.62  E-value=0.24  Score=50.81  Aligned_cols=84  Identities=11%  Similarity=0.065  Sum_probs=59.1

Q ss_pred             hHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHH-HHHHHHHHHHHHhhhhheeeeccCccchhhHH
Q 013020           34 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW-YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVP  112 (451)
Q Consensus        34 ~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~-fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~  112 (451)
                      ..+++...+.+++.+...+.....+.+.++++       .+...+.. +.+..++|+.+++.+.+++.+..||+..|.+.
T Consensus       316 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-------~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~  388 (420)
T PRK09528        316 LEVSILKLLHAFEVPFLLVGVFKYITLNFDVR-------LSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLIL  388 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc-------ceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHH
Confidence            44555566666777666666666767766532       23334433 55678899999999999999999999999987


Q ss_pred             HHHHHHHHHHHH
Q 013020          113 AVIMLLSALSFF  124 (451)
Q Consensus       113 ~i~~~i~li~f~  124 (451)
                      ++..+++.++.+
T Consensus       389 ~~~~~i~~~~~~  400 (420)
T PRK09528        389 GGIVLLFTLISV  400 (420)
T ss_pred             HHHHHHHHHHHH
Confidence            777666655444

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=89.54  E-value=6.8  Score=42.38  Aligned_cols=122  Identities=11%  Similarity=0.093  Sum_probs=74.6

Q ss_pred             hccCcCCCCccccCchhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHh
Q 013020          227 SMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSI  306 (451)
Q Consensus       227 ~md~~~~~g~~ip~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~  306 (451)
                      +++..++ + .=...|+...+.+..-+..|++.++..-+-||.           =+..|.++..++.++.+-.+      
T Consensus        69 ~I~~diG-~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~-----------~~i~g~~l~vvG~Iv~atA~------  129 (599)
T PF06609_consen   69 YINADIG-G-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRY-----------FFIIGSLLGVVGSIVCATAQ------  129 (599)
T ss_pred             HHHHhcC-C-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchH-----------HHHHHHHHHHhHHHHhhcCC------
Confidence            3444554 2 122447777777777777888888765554442           25667777777777665332      


Q ss_pred             hhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          307 AINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       307 ~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                                      |+.-++....+.++|--..... ...+.+..|.+.|....++.....-+....++.+...+.
T Consensus       130 ----------------~~~~~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~  190 (599)
T PF06609_consen  130 ----------------NMNTFIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA  190 (599)
T ss_pred             ----------------cHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc
Confidence                            2222566667777775555543 344778889999988777665554454455666665543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF13347 MFS_2: MFS/sugar transport protein

Probab=89.22  E-value=2.8  Score=43.07  Aligned_cols=126  Identities=13%  Similarity=0.130  Sum_probs=80.1

Q ss_pred             cccCchhhhhHHHHHHHHHHHHHHHHhhhhhhccCC---CCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 013020          237 EIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGK---PCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGIS  313 (451)
Q Consensus       237 ~ip~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~---~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~  313 (451)
                      .+++....     .++...++.|.+..|+.-....|   +.| +-..=+.+|.++.++++..+....        .++  
T Consensus        33 gl~~~~~g-----~i~~~~~i~dai~dp~~G~~sDr~~tr~G-rrrp~~l~g~i~~~~~~~llf~~~--------p~~--   96 (428)
T PF13347_consen   33 GLSPALAG-----LILLVGRIWDAITDPLIGYLSDRTRTRWG-RRRPWILIGAILLALSFFLLFSPP--------PAG--   96 (428)
T ss_pred             CCCHHHHH-----HHHHHHHHhhhhcCCcEEEEEeeeccccc-ccceEeehhhHHHHHHHHHhhccc--------cch--
Confidence            45554433     34556677777777765432211   111 111124567787777777665331        001  


Q ss_pred             CCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccC-chhhhHHHHHHhHHHHHHHHHHHHHhhh
Q 013020          314 DDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELP-KSMSSIASTLSGAGLSAANLVASLIMNA  382 (451)
Q Consensus       314 ~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP-~~~kg~~~g~~~l~~aiG~~l~~~l~~~  382 (451)
                          ........|+...|++..++--+....-.+...+.+| ++.|....+.-.+...+|+.+.+.+...
T Consensus        97 ----~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~  162 (428)
T PF13347_consen   97 ----LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPI  162 (428)
T ss_pred             ----hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence                0112467888899999999999999999999999998 4688888888778788888655555444

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=89.12  E-value=5.1  Score=40.33  Aligned_cols=60  Identities=12%  Similarity=-0.142  Sum_probs=36.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      +.|.++...++.+++.....|.....+.+..+  .++..+|......++|..+++.+.....
T Consensus        93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~--~~~~a~~~~~~~~~lg~~igp~lgg~l~  152 (382)
T PRK11128         93 SFWLLFVAIGLFNLFFSPLVPLTDALANTWQK--QIGLDYGKVRLWGSIAFVIGSALTGKLV  152 (382)
T ss_pred             cHHHHHHHHHHHHHHHcccccHHHHHHHHHHh--hccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            45555566677888887777776666554432  3445455555555666666666666543

>PRK15075 citrate-proton symporter; Provisional

Probab=88.57  E-value=7.4  Score=40.04  Aligned_cols=57  Identities=14%  Similarity=0.133  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020          327 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  383 (451)
Q Consensus       327 li~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~  383 (451)
                      ++..-+++|+++....+....++.+..|++.|+..++++.....+|..+++.+....
T Consensus       120 l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l  176 (434)
T PRK15075        120 VLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLL  176 (434)
T ss_pred             HHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455568899999998888889999999999999999998877666666655554443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=88.52  E-value=6.7  Score=39.52  Aligned_cols=60  Identities=15%  Similarity=-0.047  Sum_probs=45.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      +.++++..+++++.+.....|.....+.+  +++.++..+|......++|..+++.+.....
T Consensus        93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~  152 (382)
T TIGR00902        93 NAWLLFIAIGLFALFFSAGMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGLI  152 (382)
T ss_pred             hHHHHHHHHHHHHHHHccchhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            45666677788888887778887777643  3566788899888888899988888766654

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09669 putative symporter YagG; Provisional

Probab=88.46  E-value=4.3  Score=41.90  Aligned_cols=59  Identities=10%  Similarity=-0.074  Sum_probs=42.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHhhccc-CchhhhHHHHHHhHHHHHHHHHHHHHh
Q 013020          322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTEL-PKSMSSIASTLSGAGLSAANLVASLIM  380 (451)
Q Consensus       322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~a-P~~~kg~~~g~~~l~~aiG~~l~~~l~  380 (451)
                      ...+|....|++.+++-.+..+.-.+.....+ +++.|+...+.-.....+|..+++.+.
T Consensus       107 ~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~  166 (444)
T PRK09669        107 GKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIA  166 (444)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45778888888888777777777777877766 457788777776666677777766543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=88.43  E-value=17  Score=37.37  Aligned_cols=81  Identities=14%  Similarity=0.083  Sum_probs=58.8

Q ss_pred             HHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccC---ccchhhHHHHHHH
Q 013020           41 GLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG---WKVGFGVPAVIML  117 (451)
Q Consensus        41 ~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g---~~~~F~i~~i~~~  117 (451)
                      .++++|-|.|-. --+..+.-|++       +++..+-.++= +-|+|..+...+.+.+....|   |+.+-.+..+.++
T Consensus       113 ll~G~~GasFav-~m~~~s~~fP~-------~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~  183 (417)
T COG2223         113 LLLGLAGASFAV-GMPNASFFFPK-------EKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALA  183 (417)
T ss_pred             HHHhcccceehc-ccccccccCCh-------hhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            344455444432 33444556664       34566666666 899999999999999999999   9999999999999


Q ss_pred             HHHHHHHhcCccE
Q 013020          118 LSALSFFLASPFY  130 (451)
Q Consensus       118 i~li~f~~g~~~~  130 (451)
                      ++.+.++.+.+-.
T Consensus       184 v~~v~~~~~~~d~  196 (417)
T COG2223         184 IAAVLAWLGMNDV  196 (417)
T ss_pred             HHHHHHHHHhCCC
Confidence            9888888766533

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=88.11  E-value=5.7  Score=38.05  Aligned_cols=118  Identities=10%  Similarity=0.089  Sum_probs=73.7

Q ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhH
Q 013020          281 RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSI  360 (451)
Q Consensus       281 ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~  360 (451)
                      -..+|.++..+++......-.         |.      ..+.++|.+.....+.+.|..+.....+--..+.-|+ .||.
T Consensus        68 ~l~iG~~~~~~GY~~~~l~~~---------~~------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~  131 (250)
T PF06813_consen   68 VLLIGAVLGFVGYGLLWLAVS---------GR------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGT  131 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh---------Cc------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCc
Confidence            356777777777765554421         10      1124555555555677788888777777777788886 6999


Q ss_pred             HHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 013020          361 ASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYG  431 (451)
Q Consensus       361 ~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~  431 (451)
                      +.|+---..+++..+=+.+...+.            ++     +.+.|..+++....+..++.....|...
T Consensus       132 vvgilk~~~GLSaai~t~i~~~~f------------~~-----~~~~fll~la~~~~~v~l~~~~~vr~~~  185 (250)
T PF06813_consen  132 VVGILKGFFGLSAAIFTQIYSAFF------------GD-----DPSSFLLFLAVLPAVVCLVAMFFVRPVP  185 (250)
T ss_pred             eehhhhHHHHhHHHHHHHHHHHHc------------CC-----ChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence            999988888888776655554433            11     2356677777766655555444444443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=88.06  E-value=7.6  Score=40.42  Aligned_cols=124  Identities=14%  Similarity=0.065  Sum_probs=66.2

Q ss_pred             CCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCc
Q 013020          276 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK  355 (451)
Q Consensus       276 ~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~  355 (451)
                      .+...|+..++++..+-+++....-.        .+      .......+..+..-++.+++..+.-.+.+.++...-|+
T Consensus        72 i~~~~Ri~~~lv~~~~~~~~~~~l~~--------~~------~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~~fp~~  137 (437)
T TIGR00939        72 IPVTVRLLGGLVILLVVVILVMVLVK--------VQ------TSETGFFVTTMASVVIINSGMALLQGSLFGLAGVFPST  137 (437)
T ss_pred             cCccchhHHHHHHHHHHHHHHhheee--------ec------CCcchHHHHHHHHHHHHHhhhhhhcccchhhcccCCHH
Confidence            56667898887765555544433211        01      01112444455666788999999998888888865554


Q ss_pred             hhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 013020          356 SMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLAC  426 (451)
Q Consensus       356 ~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~  426 (451)
                      -+++     ++...+++..++..+.-+.. ....+   +.   +..++ ...||.+-+++.++..+.|..+
T Consensus       138 ~~~a-----~~~G~g~aGv~~s~~~ii~~-a~~~~---~~---~~~~~-a~~YF~~a~~v~l~~i~~~~~l  195 (437)
T TIGR00939       138 YSSA-----VMSGQGLAGVLTSLAMILVK-ASGND---SH---GLKKS-ALGYFGTPCVVQLICIVCYLLL  195 (437)
T ss_pred             HHHH-----HHhcchhHHHHHHHHHHHHH-HhcCC---cc---chhhh-hhhHHHHHHHHHHHHHHHHHHH
Confidence            4443     44445666655554432222 11000   00   12222 2345555556666666666554

>PRK10429 melibiose:sodium symporter; Provisional

Probab=87.66  E-value=11  Score=39.32  Aligned_cols=57  Identities=14%  Similarity=-0.034  Sum_probs=44.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHhhccc-CchhhhHHHHHHhHHHHHHHHHHHHH
Q 013020          323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTEL-PKSMSSIASTLSGAGLSAANLVASLI  379 (451)
Q Consensus       323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~a-P~~~kg~~~g~~~l~~aiG~~l~~~l  379 (451)
                      ..+|....|++..++--+..+.-.++....+ +++.|+...+.-.....+|..+.+.+
T Consensus       105 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~  162 (473)
T PRK10429        105 QYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGF  162 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678888999999999999999999999988 58889888887455556665555443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=87.40  E-value=16  Score=37.02  Aligned_cols=116  Identities=16%  Similarity=0.223  Sum_probs=81.8

Q ss_pred             CCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCc
Q 013020          276 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK  355 (451)
Q Consensus       276 ~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~  355 (451)
                      +++-+-+..++++.+++.++       |-                --+.+-++..-++.+.|-....+--.+++-+.-|+
T Consensus        74 ~g~er~l~~~Llli~~G~~i-------R~----------------~~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk  130 (395)
T COG2807          74 FGEERSLFLALLLIAAGILI-------RS----------------LGGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK  130 (395)
T ss_pred             HhhHHHHHHHHHHHHHHHHH-------Hh----------------cccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc
Confidence            46666677777776655432       21                12455577778899999999999999999999999


Q ss_pred             hhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 013020          356 SMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY  430 (451)
Q Consensus       356 ~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y  430 (451)
                      +.- .+||+|..+..+|..+++.++..+....     .+|        +..  ....+..+++++++++-...|+
T Consensus       131 ~~~-~mtglYs~sl~~~aaLaa~lavpla~~~-----~gW--------~~a--L~~WAl~allAl~~WlPq~~r~  189 (395)
T COG2807         131 RVG-LMTGLYSTSLGAGAALAAALAVPLAQHS-----GGW--------RGA--LGFWALLALLALLIWLPQALRE  189 (395)
T ss_pred             chh-hHHhHHHHHHHHHHHHHhhhhhHHHHhh-----ccH--------HHH--HHHHHHHHHHHHHHHhhhcccc
Confidence            875 9999999999999999888776654321     245        222  2345667777777777665444

>PRK11462 putative transporter; Provisional

Probab=86.38  E-value=26  Score=36.48  Aligned_cols=57  Identities=9%  Similarity=-0.027  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHhhcccC-chhhhHHHHHHhHHHHHHHHHHHHHh
Q 013020          324 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELP-KSMSSIASTLSGAGLSAANLVASLIM  380 (451)
Q Consensus       324 ~~wli~~y~l~~igEl~~~p~g~ef~~~~aP-~~~kg~~~g~~~l~~aiG~~l~~~l~  380 (451)
                      ..|....|++..++-.+....-.++....++ ++.|+..++.-.....+|..+++.+.
T Consensus       109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~  166 (460)
T PRK11462        109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLM  166 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788899999999999999999999999888 88999999988888888877776654

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=85.43  E-value=1.7  Score=45.85  Aligned_cols=87  Identities=24%  Similarity=0.323  Sum_probs=73.3

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccC-ccchhh
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFG  110 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g-~~~~F~  110 (451)
                      +.+.+|+.=+++++..|+..+..-++.++.-+++       +...+|..|-+.--..+++||++.+.+.+..| .+++|.
T Consensus       379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g-------~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~  451 (477)
T PF11700_consen  379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPG-------REAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFL  451 (477)
T ss_pred             cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence            3444666666899999999999999999988763       45889999999999999999999998888765 789999


Q ss_pred             HHHHHHHHHHHHHHh
Q 013020          111 VPAVIMLLSALSFFL  125 (451)
Q Consensus       111 i~~i~~~i~li~f~~  125 (451)
                      .-.+.+++++++++.
T Consensus       452 ~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  452 FLLVLFLIGLILLFF  466 (477)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            888888888887753

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=85.27  E-value=12  Score=38.33  Aligned_cols=81  Identities=21%  Similarity=0.158  Sum_probs=53.9

Q ss_pred             CCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCc
Q 013020          276 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK  355 (451)
Q Consensus       276 ~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~  355 (451)
                      .+-..|+.+..+++++++++.++.+                      ++++-+..-++.+++--+.-.+-+++.... |+
T Consensus        86 v~y~~Ri~~~~~l~~~g~l~va~~~----------------------~v~~~l~Gv~las~ssg~GE~tfL~lt~~y-~~  142 (402)
T PF02487_consen   86 VPYWIRILICVALSAAGMLLVAFSP----------------------SVWVRLLGVVLASLSSGLGEVTFLSLTHFY-GK  142 (402)
T ss_pred             ccchHHHHHHHHHHHHHHhheeecc----------------------chhHHHHHHHHHhhhhhhhHHHHHHHHHhc-Cc
Confidence            4667799999999999998766542                      233444455565555555555566654433 22


Q ss_pred             hhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020          356 SMSSIASTLSGAGLSAANLVASLIMNAV  383 (451)
Q Consensus       356 ~~kg~~~g~~~l~~aiG~~l~~~l~~~~  383 (451)
                          ...+.|...++.|..+|+......
T Consensus       143 ----~~l~~wssGTG~aGl~Ga~~y~~l  166 (402)
T PF02487_consen  143 ----SSLSAWSSGTGGAGLVGALYYLGL  166 (402)
T ss_pred             ----cccccccCCcChhhHHHHHHHHHH
Confidence                346889998999999888766544

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=84.56  E-value=52  Score=33.82  Aligned_cols=90  Identities=12%  Similarity=0.065  Sum_probs=67.2

Q ss_pred             CCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCc
Q 013020          276 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK  355 (451)
Q Consensus       276 ~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~  355 (451)
                      .+..+-|.+|+.+.+++..+..=..                   +.-++-..+...++++.|=-+.-.++..+++...|+
T Consensus        75 ~gyk~gi~lgL~l~avg~~lF~pAa-------------------~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~  135 (422)
T COG0738          75 LGYKAGIVLGLLLYAVGAALFWPAA-------------------SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKP  135 (422)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhh-------------------hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCc
Confidence            3444557888888777765543221                   123455567778999999999999999999999999


Q ss_pred             hhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          356 SMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       356 ~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      +-.+.=|.+.....++|..+++.+++..-
T Consensus       136 ~~a~~rlnl~q~fn~lGa~~gp~~g~~li  164 (422)
T COG0738         136 ESAAFRLNLAQAFNGLGAILGPLLGSSLI  164 (422)
T ss_pred             hhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            88888888888888888888887766543

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=83.80  E-value=57  Score=33.72  Aligned_cols=87  Identities=18%  Similarity=0.266  Sum_probs=63.3

Q ss_pred             chhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhh
Q 013020          279 KLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMS  358 (451)
Q Consensus       279 ~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~k  358 (451)
                      .+-+.+|+++..+..+...+.+.                   +.. +|..  =++.+++.-=+...+=++..+.+|++..
T Consensus       318 k~vl~~~lvi~~~~~~~~~~~~~-------------------~~~-f~i~--gll~g~s~G~~qA~SRSy~~~lvp~~k~  375 (438)
T COG2270         318 KPVLMIGLVILSIAALYLIFLEG-------------------ELD-FWIL--GLLVGTSLGGAQASSRSYLARLVPKGKE  375 (438)
T ss_pred             ceeehHHHHHHHHHHHHHHHccc-------------------cHH-HHHH--HHHHHHhcchHHHHHHHHHHHhCCCccc
Confidence            34566777777766666555531                   122 2222  1555666656666777899999999999


Q ss_pred             hHHHHHHhHHHHHHHHHHHHHhhhhcccc
Q 013020          359 SIASTLSGAGLSAANLVASLIMNAVDDIT  387 (451)
Q Consensus       359 g~~~g~~~l~~aiG~~l~~~l~~~~~~~s  387 (451)
                      +..+|++.++.-.++.+|+.+++.+-..+
T Consensus       376 ~~fFglyaltgra~S~~gp~lv~v~t~iT  404 (438)
T COG2270         376 GRFFGLYALTGRAASFLGPFLVAVITQIT  404 (438)
T ss_pred             cceeehhhhhhhHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999998887655

>PRK09848 glucuronide transporter; Provisional

Probab=80.41  E-value=2.1  Score=44.20  Aligned_cols=91  Identities=18%  Similarity=0.213  Sum_probs=63.6

Q ss_pred             hhHHHHHHHHHHhhcccccccchhhhcccCCCCCCC-cchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCcc-----
Q 013020           33 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGT-KSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWK-----  106 (451)
Q Consensus        33 ~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~-~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~-----  106 (451)
                      .+.+++++.+.++|.|...+...++.+|.-|+++.+ ++ ++...+++.+-++.++|..+++.+.+.+-+..||.     
T Consensus       319 ~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~-r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~~~~~~  397 (448)
T PRK09848        319 LPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGV-RIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYIANQVQ  397 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence            456777788899999999999999999887654321 11 34466677899999999999988777665444442     


Q ss_pred             ---------chh-hHHHHHHHHHHHHHH
Q 013020          107 ---------VGF-GVPAVIMLLSALSFF  124 (451)
Q Consensus       107 ---------~~F-~i~~i~~~i~li~f~  124 (451)
                               ..+ .+|+++++++++++.
T Consensus       398 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~  425 (448)
T PRK09848        398 TPEVIMGIRTSIALVPCGFMLLAFVIIW  425 (448)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     222 456666666666553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	451
2xut_A	524	Proton/peptide symporter family protein; transport	5e-62
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  209 bits (533), Expect = 5e-62
 Identities = 59/425 (13%), Positives = 135/425 (31%), Gaps = 50/425 (11%)

Query: 31  SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSI 90
             +   Y    L++LGSGGI+    +F  +Q D+ + + ++ A    F  +Y  ++  S 
Sbjct: 107 HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA----FDMFYFTINFGSF 162

Query: 91  VAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVAS 150
            A   +  +  N G  V FG+P V+M ++ + F+L    Y+          G   V+ ++
Sbjct: 163 FASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSA 222

Query: 151 FKNRRTKLPTQ----ATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASN 206
              +           A           + +     +  L  A +            +   
Sbjct: 223 LLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLER 282

Query: 207 PNSLCTVEQVEELKALIK------------------ASSMD---RHVTPNFEIPSGSFNI 245
                    V+ ++++++                  AS+       +             
Sbjct: 283 ARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQA 342

Query: 246 FAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRS 305
              L + + I   +  + P   ++  K    +   +MG G+  +  S      ++     
Sbjct: 343 LNPLLVMLLIPFNNFVLYPAIERMGVKL---TALRKMGAGIAITGLSWIVVGTIQLMM-- 397

Query: 306 IAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLS 365
                           +S  WQ+    L             EF Y++ PK+M     +  
Sbjct: 398 -----------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFW 446

Query: 366 GAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLA 425
              ++  NL   L   +V   T        + + ++   +  +++     ++   + +  
Sbjct: 447 TLSVTVGNLWVLLANVSVKSPT---VTEQIVQTGMSVTAFQMFFF--AGFAILAAIVFAL 501

Query: 426 CCKAY 430
             ++Y
Sbjct: 502 YARSY 506

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 17/97 (17%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 36  LYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTC 95
           L+ +  L+ +G+G ++ +         D+ D  +  G     FS +   ++  + +A   
Sbjct: 111 LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAG-----FSIFVFGINLGAFIAPLI 165

Query: 96  IVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVK 132
           +   Q+  G+ V F + A+ M +  L ++      + 
Sbjct: 166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 48/336 (14%), Positives = 99/336 (29%), Gaps = 96/336 (28%)

Query: 124 FLASPFYVKSKANTSLLPGLTQVLVASFKNRR-------TKLPTQATEEMYHHGKGSMRL 176
           FL SP   + +      P +   +    ++R         K      +      +  + L
Sbjct: 93  FLMSPIKTEQRQ-----PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147

Query: 177 MPSENLRFLN------KACMA-----KHPEQDLTPD-------GRASNPNSLCTVEQVEE 218
            P++N+  ++      K  +A      +  Q               ++P ++  +E +++
Sbjct: 148 RPAKNV-LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV--LEMLQK 204

Query: 219 LKALIK---ASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPL---------- 265
           L   I     S  D        I S    +  +L        Y+  +L L          
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK----PYENCLLVLLNVQNAKAWN 260

Query: 266 ASKIKGKPCQLSLKLRMGIGLLFST--ASMTAWAIVEAARRSIAINE---GISDD----- 315
           A  +    C++          L +T    +T   +  A    I+++     ++ D     
Sbjct: 261 AFNLS---CKI----------LLTTRFKQVTD-FLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 316 LRAVVQMSAMWQLPYLVLSGLAMAFNMIG--------QTEFY-YTELPKSMSSIASTLSG 366
           L   +       LP  VL+      ++I           + + +    K  + I S+L  
Sbjct: 307 LLKYLDCRPQ-DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL-- 363

Query: 367 AGLSAANLVASLIMNAV--DDITKRGGNGGWIPSNI 400
             L  A         +V              IP+ +
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSA--------HIPTIL 391

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	451
2xut_A	524	Proton/peptide symporter family protein; transport	99.77
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.67
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.05
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.5
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.22
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.22
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	97.96
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	97.95
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	97.73
2xut_A	524	Proton/peptide symporter family protein; transport	97.46
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.28
2cfq_A	417	Lactose permease; transport, transport mechanism,	96.75
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	95.43
2cfq_A	417	Lactose permease; transport, transport mechanism,	92.75

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.77  E-value=5.8e-19  Score=184.22  Aligned_cols=368  Identities=17%  Similarity=0.248  Sum_probs=208.3

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +.+.++++..+.++|.|...|...++++|.+++++.    .+..+.|++++.+.|+|..+++.+.+++.++.||++.|.+
T Consensus       108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r----~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~  183 (524)
T 2xut_A          108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK----SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGI  183 (524)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT----THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            567788999999999999999999999999986543    3467889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCccEeecCCCCCchhHHHHHHHHHHHhcCCCCCCcccchh----------hccCCCccccCC---
Q 013020          112 PAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEM----------YHHGKGSMRLMP---  178 (451)
Q Consensus       112 ~~i~~~i~li~f~~g~~~~~~~~p~~~~l~~~~~vl~~a~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~---  178 (451)
                      .++..+++++.++..++++++++|++++.....+.+..+.+++..... .. ...          +....... ...   
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~  260 (524)
T 2xut_A          184 PGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG-NI-GLVLALIGGVSAAYALVNIPT-LGIVAG  260 (524)
T ss_dssp             HHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHH-HH-HHHHHHHHHHHHHHTGGGTTT-TCSSHH
T ss_pred             HHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccC-cc-chhhhhhhhhhhhhhhcccch-hhhhhh
Confidence            999988888877766555544344433322222232222222210000 00 000          00000000 000   


Q ss_pred             -----------CCchhh--hhhhhhhcCCCCCCCCCC----------CCCCCCCcchhHHHHHHHHHHHHhhccCcCCCC
Q 013020          179 -----------SENLRF--LNKACMAKHPEQDLTPDG----------RASNPNSLCTVEQVEELKALIKASSMDRHVTPN  235 (451)
Q Consensus       179 -----------~~~~~~--l~~a~~~~~~~~~~~~~~----------~~~~~w~l~~~~~v~~~k~~~~~~~md~~~~~g  235 (451)
                                 .....|  ++.++....... .....          .....|..+.  +... -.......++..   .
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~---~  333 (524)
T 2xut_A          261 LCCAMVLVMGFVGAGASLQLERARKSHPDAA-VDGVRSVLRILVLFALVTPFWSLFD--QKAS-TWILQANDMVKP---Q  333 (524)
T ss_dssp             HHHHHHHHHHHHHTGGGTHHHHSCCSCCSSS-STTTTTHHHHHHHHTTSHHHHTTTS--STTT-HHHHHHHHSCCC---S
T ss_pred             hhhhhhhhhcccccchhhHHhhhhccccHhH-HHHHHHHHHHHHHHHHHHHHHHHHh--ccch-hhHHhHHhcCCC---e
Confidence                       000001  111000000000 00000          0000000000  0000 000001223321   1


Q ss_pred             ccccCchhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 013020          236 FEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDD  315 (451)
Q Consensus       236 ~~ip~~~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~  315 (451)
                      + ++..++..++++..++..|+.+++..|..+|++++   +++.+++.+|+++.+++++.+++.+..+     +      
T Consensus       334 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~------  398 (524)
T 2xut_A          334 W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLMM-----D------  398 (524)
T ss_dssp             S-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTTT-----T------
T ss_pred             e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHh-----c------
Confidence            1 36677888888999999999999888877775433   5777889999999998888766543210     0      


Q ss_pred             ccccccchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCC
Q 013020          316 LRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGW  395 (451)
Q Consensus       316 ~~~~~~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w  395 (451)
                        .....+.+|+++.+++.++++.+..|...+++.+.+|++.||.++|++.....+|+.+++.+...+.+.+.    .+|
T Consensus       399 --~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~  472 (524)
T 2xut_A          399 --GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQ  472 (524)
T ss_dssp             --TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHH
T ss_pred             --CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----ccc
Confidence              01246888999999999999999999999999999999999999999999999999999998887654221    124


Q ss_pred             CCC-CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcCcccCC
Q 013020          396 IPS-NINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGR  436 (451)
Q Consensus       396 ~~~-~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~~~~~~  436 (451)
                      .++ +++.  ..+.|++.++++++..+++++..+++++++++
T Consensus       473 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (524)
T 2xut_A          473 IVQTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQMQDHY  512 (524)
T ss_dssp             HHHHHSCH--HHHHHHHHHHHHHHHHHHHC------------
T ss_pred             cccccccc--cccHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence            321 1121  12337888899999998888888887766543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.67  E-value=2.4e-15  Score=155.26  Aligned_cols=345  Identities=14%  Similarity=0.120  Sum_probs=210.4

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +.+.++++..+.++|.|...|...++++|.+++++.     +|..++++++.+.|+|..+++.+.+++.++.||++.|.+
T Consensus       107 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~-----~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~  181 (491)
T 4aps_A          107 GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR-----RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSL  181 (491)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc-----cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            457788999999999999999999999999986543     578899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCccEeec---CCCCC-chhHHHHHHH--------------HHHHhcCCCCCCcccchhhccCCCc
Q 013020          112 PAVIMLLSALSFFLASPFYVKS---KANTS-LLPGLTQVLV--------------ASFKNRRTKLPTQATEEMYHHGKGS  173 (451)
Q Consensus       112 ~~i~~~i~li~f~~g~~~~~~~---~p~~~-~l~~~~~vl~--------------~a~~~~~~~~~~~~~~~~~~~~~~~  173 (451)
                      +++..+++++.++..++++.++   +|+.. ...+..+...              ............ . ... ...   
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~-~-~~~-~~~---  255 (491)
T 4aps_A          182 AAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPA-Y-INL-LTI---  255 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTH-H-HHH-HHH---
T ss_pred             HHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCccccc-c-hhh-hhH---
Confidence            9988888887776544333222   11111 1111111000              000000000000 0 000 000   


Q ss_pred             cccCCCCchhhhh-hhhhhcCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHh--------hccCcCCCCcc-ccCchh
Q 013020          174 MRLMPSENLRFLN-KACMAKHPEQDLTPDGRASNPNSLCTVEQVEELKALIKAS--------SMDRHVTPNFE-IPSGSF  243 (451)
Q Consensus       174 ~~~~~~~~~~~l~-~a~~~~~~~~~~~~~~~~~~~w~l~~~~~v~~~k~~~~~~--------~md~~~~~g~~-ip~~~l  243 (451)
                           ........ .........  ..... ....+..... ..-..-......        ......  +.. .+.+++
T Consensus       256 -----~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  324 (491)
T 4aps_A          256 -----VAIAIPVFYFAWMISSVK--VTSTE-HLRVVSYIPL-FIAAVLFWAIEEQGSVVLATFAAERV--DSSWFPVSWF  324 (491)
T ss_dssp             -----HHHHHHHHHHHHHC---------------CTTHHHH-HHHHHHHHHHHGGGGTHHHHHHHHSC--CCSSSCSGGG
T ss_pred             -----HHHHHHHHHHHHHhhccc--ccHHH-HHHHHHHHHH-HHHHHHHHHHHhhccHHHHHHHHHHh--ccCccCHHHH
Confidence                 00000000 000000000  00000 0000000000 000000000000        011111  112 567788


Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccch
Q 013020          244 NIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMS  323 (451)
Q Consensus       244 ~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s  323 (451)
                      ..++.+..++..|+..++..++.||   +   +....++.+|+++.+++++.+++.....       +      ...+.+
T Consensus       325 ~~~~~~~~~~~~~~~~~l~~r~~~r---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~------~~~~~~  385 (491)
T 4aps_A          325 QSLNPLFIMLYTPFFAWLWTAWKKN---Q---PSSPTKFAVGLMFAGLSFLLMAIPGALY-------G------TSGKVS  385 (491)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHHHHHHHHHHHTTTHHHHHHC-------C------CCTTCC
T ss_pred             hccchHHHHHHHHHHHHHHHHHhcc---C---CCchHHHHHHHHHHHHHHHHHHHHHHhc-------C------CCCCcc
Confidence            9999999999999998865444332   1   5677889999999999998887765320       1      013578


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCCc
Q 013020          324 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKG  403 (451)
Q Consensus       324 ~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~  403 (451)
                      .+|+++.+++.++++.+..|...+++.+..|++.||.++|++.....+|+.+++.+...+.+.                 
T Consensus       386 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-----------------  448 (491)
T 4aps_A          386 PLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-----------------  448 (491)
T ss_dssp             THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----------------
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------
Confidence            899999999999999999999999999999999999999999999999999999888776532                 


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhcCccc
Q 013020          404 HYDYYYWLLTALSMANFLYYLACCKAYGPFK  434 (451)
Q Consensus       404 ~~~~~f~~la~l~lv~~~~~~~~~~~y~~~~  434 (451)
                      .....|+.+++++++..+++++..++.+++.
T Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (491)
T 4aps_A          449 SEVAYFSYFGLGSVVLGIVLVFLSKRIQGLM  479 (491)
T ss_dssp             STTHHHHHTHHHHHHHHHHHHHC--------
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1345677888888888888877777766553

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.05  E-value=1.1e-08  Score=103.48  Aligned_cols=309  Identities=10%  Similarity=0.004  Sum_probs=169.7

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccC-ccchhh
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFG  110 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g-~~~~F~  110 (451)
                      +...++++..+.++|.|...+...++++|.+++       ++|...++++..+.++|.++++.+.+++.+..| |++.|.
T Consensus       118 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~  190 (451)
T 1pw4_A          118 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALY  190 (451)
T ss_dssp             SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-------THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTH
T ss_pred             cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            456788889999999999999999999999874       368899999999999999999999988878888 999999


Q ss_pred             HHHHHHHHHHHHHHhcCccEeecCCCCCchhHHHHHHHHHHHhcCCCCCCcccchhhccCCCccccCCCCchhhhhhhhh
Q 013020          111 VPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACM  190 (451)
Q Consensus       111 i~~i~~~i~li~f~~g~~~~~~~~p~~~~l~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~  190 (451)
                      +.++..++..++.+...+.-++.. +..+..+          .+. ..+.    . ..+....    .........+ ..
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------~~~-~~~~----~-~~~~~~~----~~~~~~~~~~-~~  248 (451)
T 1pw4_A          191 MPAFCAILVALFAFAMMRDTPQSC-GLPPIEE----------YKN-DYPD----D-YNEKAEQ----ELTAKQIFMQ-YV  248 (451)
T ss_dssp             HHHHHHHHHHHHHHHHCCCSSTTT-CCCSCTT----------TCC-C----------------------CCTHHHHH-HT
T ss_pred             HHHHHHHHHHHHHHhhccCCHhhc-CCCChhh----------hcc-cccc----c-chhhhhc----ccccccchHH-HH
Confidence            988776665544332222110000 0000000          000 0000    0 0000000    0000000000 00


Q ss_pred             hcCCCCCCCCCCCCCCCCCcch----hHHHHHHHHHHHHhhccCcCCCCccccCc---hhhhhHHHHHHHHHHHHHHHHh
Q 013020          191 AKHPEQDLTPDGRASNPNSLCT----VEQVEELKALIKASSMDRHVTPNFEIPSG---SFNIFAILTLTIWIGLYDRAVL  263 (451)
Q Consensus       191 ~~~~~~~~~~~~~~~~~w~l~~----~~~v~~~k~~~~~~~md~~~~~g~~ip~~---~l~~~n~l~iii~~pl~~~~~~  263 (451)
                             ++    ....|.++-    ..-....-..+-...+...    ...++.   ++.....+..++..++..++. 
T Consensus       249 -------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~-  312 (451)
T 1pw4_A          249 -------LP----NKLLWYIAIANVFVYLLRYGILDWSPTYLKEV----KHFALDKSSWAYFLYEYAGIPGTLLCGWMS-  312 (451)
T ss_dssp             -------SS----CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB----SCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             -------Hc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence                   00    000000000    0000000000001112211    123332   334444444555555554443 


Q ss_pred             hhhhhccCCCCCCCcchhhhHhHHHHH-HHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHh
Q 013020          264 PLASKIKGKPCQLSLKLRMGIGLLFST-ASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNM  342 (451)
Q Consensus       264 pl~~r~~~~~~~~s~~~ki~iG~~l~~-~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~wli~~y~l~~igEl~~~  342 (451)
                         +|..+     ...+.+.++.++.+ ++++...+.                    ...+.++.+...++.+++-....
T Consensus       313 ---~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~g~~~~~~~  364 (451)
T 1pw4_A          313 ---DKVFR-----GNRGATGVFFMTLVTIATIVYWMN--------------------PAGNPTVDMICMIVIGFLIYGPV  364 (451)
T ss_dssp             ---HHTST-----TCHHHHHHHHHHHHHHHHHHTTSC--------------------CTTCHHHHHHHHHHHHHHHTHHH
T ss_pred             ---HHHhc-----CCchhHHHHHHHHHHHHHHHHHHh--------------------cccCHHHHHHHHHHHHHHHhchH
Confidence               33200     11122333443333 333322111                    01356666777788888888888


Q ss_pred             hhhHHHhhcccCchhhhHHHHHHhHHHHH-HHHHHHHHhhhhccccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 013020          343 IGQTEFYYTELPKSMSSIASTLSGAGLSA-ANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFL  421 (451)
Q Consensus       343 p~g~ef~~~~aP~~~kg~~~g~~~l~~ai-G~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~~~~~~~f~~la~l~lv~~~  421 (451)
                      +....++.+..|++.+|.++|+......+ |..+++.+.+.+.+..      +          +...|+..++++++..+
T Consensus       365 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~------g----------~~~~~~~~~~~~~~~~~  428 (451)
T 1pw4_A          365 MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF------G----------WDGGFMVMIGGSILAVI  428 (451)
T ss_dssp             HHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS------C----------SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------C----------cHHHHHHHHHHHHHHHH
Confidence            88889999999999999999999998998 9999998877654321      1          34567777888777777


Q ss_pred             HHHHHhhh
Q 013020          422 YYLACCKA  429 (451)
Q Consensus       422 ~~~~~~~~  429 (451)
                      +++...++
T Consensus       429 ~~~~~~~~  436 (451)
T 1pw4_A          429 LLIVVMIG  436 (451)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            66665444

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.50  E-value=8.3e-06  Score=81.87  Aligned_cols=87  Identities=16%  Similarity=0.148  Sum_probs=71.3

Q ss_pred             cchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheee-eccC-----
Q 013020           31 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ-DNLG-----  104 (451)
Q Consensus        31 ~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~-~~~g-----  104 (451)
                      .+.+.++++..+.++|.|...+...++++|.+++       ++|...++++..+.++|..+++.+.+++. +..+     
T Consensus       115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~  187 (438)
T 3o7q_A          115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE-------SSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQD  187 (438)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS-------TTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHH
T ss_pred             ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence            3567889999999999999999999999999875       35778899999999999999999988887 5554     


Q ss_pred             --------------------ccchhhHHHHHHHHHHHHHH
Q 013020          105 --------------------WKVGFGVPAVIMLLSALSFF  124 (451)
Q Consensus       105 --------------------~~~~F~i~~i~~~i~li~f~  124 (451)
                                          |++.|.+.++..++..+.++
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  227 (438)
T 3o7q_A          188 VLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM  227 (438)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence                                89999776665555544443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.22  E-value=3e-05  Score=79.15  Aligned_cols=83  Identities=14%  Similarity=0.097  Sum_probs=62.3

Q ss_pred             ccchhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeec-------
Q 013020           30 WSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-------  102 (451)
Q Consensus        30 ~~~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~-------  102 (451)
                      ..+...++++-.+.++|.|+.-+....+++|..++       ++|.....++..++.+|.+++......+...       
T Consensus       123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~-------~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  195 (491)
T 4gc0_A          123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPA-------HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLN  195 (491)
T ss_dssp             GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCG-------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-------HhhhhhHHhhhhhhhhhhhhhhhcchhhcccccccccc
Confidence            35678899999999999999999999999987753       4678888889999999999988765544332       


Q ss_pred             -cCccchhhHHHHHHHHH
Q 013020          103 -LGWKVGFGVPAVIMLLS  119 (451)
Q Consensus       103 -~g~~~~F~i~~i~~~i~  119 (451)
                       .+|++.+.+..+..++.
T Consensus       196 ~~~~~~~~~~~~~~~~~~  213 (491)
T 4gc0_A          196 TDGWRYMFASECIPALLF  213 (491)
T ss_dssp             TTHHHHHHHTTHHHHHHH
T ss_pred             chhhHHHhhhhhhhhhhh
Confidence             34555555554444433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.22  E-value=4.6e-07  Score=89.51  Aligned_cols=83  Identities=13%  Similarity=0.106  Sum_probs=71.1

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeeeccCccchhhH
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGV  111 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i  111 (451)
                      +.+.++++..+.++|.|...+...++..|.++++       +|.+.++++..+.++|..+++.+.+++.++.||++.|.+
T Consensus        87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  159 (375)
T 2gfp_A           87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT-------QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF  159 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-------SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH-------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence            4567778888899999999999999999998752       467788999999999999999999999999999999998


Q ss_pred             HHHHHHHHHH
Q 013020          112 PAVIMLLSAL  121 (451)
Q Consensus       112 ~~i~~~i~li  121 (451)
                      .++..++..+
T Consensus       160 ~~~~~~~~~~  169 (375)
T 2gfp_A          160 LLVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            7777666554

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=97.96  E-value=9.1e-05  Score=74.39  Aligned_cols=142  Identities=10%  Similarity=-0.015  Sum_probs=97.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020          242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ  321 (451)
Q Consensus       242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~  321 (451)
                      ++.+...+..++..|+..++..+.-+|           +-+.+|.++.+++.+..++....                  .
T Consensus        66 ~~~~~~~~~~~~~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~~------------------~  116 (451)
T 1pw4_A           66 FALSGISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILAAAVMLFMGFVPWA------------------T  116 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHCHHH------------------H
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhcCch-----------HHHHHHHHHHHHHHHHHHhhhhc------------------c
Confidence            344555555566666666554332222           23567788888877776653210                  1


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCC-CCCCCC
Q 013020          322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGG-WIPSNI  400 (451)
Q Consensus       322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~-w~~~~l  400 (451)
                      .+.++++...++.|++.....|....++.+..|++.|+..+|++....++|..+++.+....-...      + |-    
T Consensus       117 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------g~w~----  186 (451)
T 1pw4_A          117 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF------NDWH----  186 (451)
T ss_dssp             SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT------CCST----
T ss_pred             ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccHH----
Confidence            345677788999999999999999999999999999999999999999999999988876533211      3 51    


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 013020          401 NKGHYDYYYWLLTALSMANFLYYLACCK  428 (451)
Q Consensus       401 n~~~~~~~f~~la~l~lv~~~~~~~~~~  428 (451)
                            ..|++.++++++..++.++..+
T Consensus       187 ------~~f~~~~~~~~~~~~~~~~~~~  208 (451)
T 1pw4_A          187 ------AALYMPAFCAILVALFAFAMMR  208 (451)
T ss_dssp             ------TCTHHHHHHHHHHHHHHHHHCC
T ss_pred             ------HHHHHHHHHHHHHHHHHHhhcc
Confidence                  2355666666666555444433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=97.95  E-value=6.8e-05  Score=76.56  Aligned_cols=142  Identities=12%  Similarity=0.044  Sum_probs=99.0

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhh-hhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccc
Q 013020          242 SFNIFAILTLTIWIGLYDRAVLP-LASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV  320 (451)
Q Consensus       242 ~l~~~n~l~iii~~pl~~~~~~p-l~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~  320 (451)
                      ++.+...+...+..|+..++..+ +-||           +-+.+|.++.+++.+..++                      
T Consensus        58 ~~~~~~~~~~~~~~~~~g~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~----------------------  104 (491)
T 4aps_A           58 SIMAIYASMVYLSGTIGGFVADRIIGAR-----------PAVFWGGVLIMLGHIVLAL----------------------  104 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSCHH-----------HHHHHHHHHHHHHHHHHHS----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccch-----------HHHHHHHHHHHHHHHHHHH----------------------
Confidence            45566666666777777666543 2222           1255667666666654432                      


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchh--hhHHHHHHhHHHHHHHHHHHHHhhhhccccccCCCCCCCCC
Q 013020          321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM--SSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPS  398 (451)
Q Consensus       321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~--kg~~~g~~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~  398 (451)
                      ..|.++++...++.|+++....|....++.+..|++.  |+..++++.....+|..+++.+...+.+..      +|   
T Consensus       105 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------g~---  175 (491)
T 4aps_A          105 PFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA------GY---  175 (491)
T ss_dssp             CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------CH---
T ss_pred             hhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh------hH---
Confidence            1356667778899999999999999999999999988  888888888989999999988887764321      33   


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcCc
Q 013020          399 NINKGHYDYYYWLLTALSMANFLYYLACCKAYGP  432 (451)
Q Consensus       399 ~ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y~~  432 (451)
                             ...|+..+++.++..++++...+++.+
T Consensus       176 -------~~~f~~~~~~~~~~~~~~~~~~~~~~~  202 (491)
T 4aps_A          176 -------HVAFSLAAIGMFIGLLVYYFGGKKTLD  202 (491)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHhCccccc
Confidence                   345566666677777766666665543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=97.73  E-value=0.00077  Score=67.31  Aligned_cols=113  Identities=12%  Similarity=-0.017  Sum_probs=86.1

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020          242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ  321 (451)
Q Consensus       242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~  321 (451)
                      ++.+...+..++..|+..++..+.-+|           +-+.+|.++.+++.+.......                   .
T Consensus        65 ~~~~~~~~~~~i~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~-------------------~  114 (438)
T 3o7q_A           65 LIQSAFYFGYFIIPIPAGILMKKLSYK-----------AGIITGLFLYALGAALFWPAAE-------------------I  114 (438)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHHHH-------------------T
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHhccc-------------------c
Confidence            345555556666667766654433222           2367788887777776643321                   2


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      .+.++++...++.|++.....+....++.+..|++.|+..+|++....++|..+++.+.....
T Consensus       115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467778888999999999999999999999999999999999999999999999999887764

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.46  E-value=0.001  Score=68.41  Aligned_cols=141  Identities=14%  Similarity=-0.012  Sum_probs=91.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccc
Q 013020          243 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQM  322 (451)
Q Consensus       243 l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~~  322 (451)
                      +.+...+..++..|+..++.    .|..      ...+-+.+|.++.+++.+..++.                     +.
T Consensus        59 ~~~~~~~~~~~~~~~~G~l~----dr~~------g~r~~~~~~~~~~~~~~~~~~~~---------------------~~  107 (524)
T 2xut_A           59 VFHSFVIGVYFFPLLGGWIA----DRFF------GKYNTILWLSLIYCVGHAFLAIF---------------------EH  107 (524)
T ss_dssp             HHHHHHHHHHHTHHHHHHHH----TTSS------CSHHHHHHHHHHHHHHHHHHHHT---------------------SS
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHh------cchHHHHHHHHHHHHHHHHHHHh---------------------cc
Confidence            34444445555555555543    3320      11223556777666666554432                     12


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHH---HhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCC
Q 013020          323 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL---SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSN  399 (451)
Q Consensus       323 s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~---~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~  399 (451)
                      +.++++...++.|+++....|....++.+..|++.|+..++.   +.....+|..+++.+...+.+..      +|    
T Consensus       108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------g~----  177 (524)
T 2xut_A          108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF------GA----  177 (524)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS------CH----
T ss_pred             cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cH----
Confidence            567778888999999999999999999999999999877666   88888899999888776654211      23    


Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 013020          400 INKGHYDYYYWLLTALSMANFLYYLACCKAY  430 (451)
Q Consensus       400 ln~~~~~~~f~~la~l~lv~~~~~~~~~~~y  430 (451)
                            ...|++.+++.++..++++...+++
T Consensus       178 ------~~~f~~~~~~~~~~~~~~~~~~~~~  202 (524)
T 2xut_A          178 ------AVAFGIPGVLMFVATVFFWLGRKRY  202 (524)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHhcccc
Confidence                  3456666666666665554443433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.28  E-value=0.0026  Score=62.13  Aligned_cols=110  Identities=14%  Similarity=0.095  Sum_probs=81.3

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020          242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ  321 (451)
Q Consensus       242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~  321 (451)
                      ++.+...+...+..|+..++.    +|.++|       +-+.+|.++.+++.+..++.                      
T Consensus        39 ~~~~~~~~~~~~~~~~~g~l~----dr~g~r-------~~~~~~~~~~~~~~~~~~~~----------------------   85 (375)
T 2gfp_A           39 SVMGAYLLTYGVSQLFYGPIS----DRVGRR-------PVILVGMSIFMLATLVAVTT----------------------   85 (375)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHH----TTSCCC-------CCCHHHHHHHHHHHHHHHHH----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHhCCc-------hhHHHHHHHHHHHHHHHHHh----------------------
Confidence            344555555556666655543    443322       12447777777777665544                      


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      .+.++++...++.+++.....+....++.+..|++.|+..+|.+....++|..+++.+.....
T Consensus        86 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  148 (375)
T 2gfp_A           86 SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD  148 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            245667778899999999999999999999999999999999999999999999998886654

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=96.75  E-value=0.012  Score=58.65  Aligned_cols=88  Identities=11%  Similarity=0.087  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHH-HhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCCC
Q 013020          324 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL-SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINK  402 (451)
Q Consensus       324 ~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~-~~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~ln~  402 (451)
                      .++++...++.+++..+..+....+..+..|++.||..+|+ +....++|+.+++.+.....+..               
T Consensus       312 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~---------------  376 (417)
T 2cfq_A          312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI---------------  376 (417)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS---------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc---------------
Confidence            44555555666777666666778899999999999999998 46667788888887776543210               


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHh
Q 013020          403 GHYDYYYWLLTALSMANFLYYLACC  427 (451)
Q Consensus       403 ~~~~~~f~~la~l~lv~~~~~~~~~  427 (451)
                       .....|...++++++..++.+...
T Consensus       377 -g~~~~f~~~~~~~l~~~~~~~~~~  400 (417)
T 2cfq_A          377 -GFQGAYLVLGLVALGFTLISVFTL  400 (417)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             -CcHHHHHHHHHHHHHHHHHHHhhh
Confidence             134456777777777776654433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=95.43  E-value=0.34  Score=48.61  Aligned_cols=64  Identities=6%  Similarity=0.067  Sum_probs=56.9

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhhc
Q 013020          321 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD  384 (451)
Q Consensus       321 ~~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~~  384 (451)
                      ..|++.++..-++.|+|+-...+.+..++...+|++.|+..++++.....+|..++..+.....
T Consensus       123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~  186 (491)
T 4gc0_A          123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA  186 (491)
T ss_dssp             GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence            3577788889999999999999999999999999999999999999999999988877765543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=92.75  E-value=0.03  Score=55.84  Aligned_cols=84  Identities=10%  Similarity=0.083  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHH-HHHHHHHHHHHHhhhhheeeeccCccchhhHHH
Q 013020           35 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW-YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA  113 (451)
Q Consensus        35 ~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~-fY~~iNiGa~i~~~~~~~i~~~~g~~~~F~i~~  113 (451)
                      .+.+...+.+++.+.+-+...++..|.+++       +.|.+.+.+ +..+.++|+.++|.+.+++.++.||...|.+.+
T Consensus       314 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~  386 (417)
T 2cfq_A          314 EVVILKTLHMFEVPFLLVGCFKYITSQFEV-------RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG  386 (417)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHHSCH-------HHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHH
Confidence            344444445555555555566777777763       456677777 466777999999999999988889999999988


Q ss_pred             HHHHHHHHHHHh
Q 013020          114 VIMLLSALSFFL  125 (451)
Q Consensus       114 i~~~i~li~f~~  125 (451)
                      +..+++.++.+.
T Consensus       387 ~~~l~~~~~~~~  398 (417)
T 2cfq_A          387 LVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh
Confidence            888888776554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	451
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.85
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.01
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	97.92
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	95.62

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=6e-08  Score=94.96  Aligned_cols=86  Identities=12%  Similarity=0.026  Sum_probs=69.3

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhheeee-ccCccchhh
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD-NLGWKVGFG  110 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~~~~~i~~-~~g~~~~F~  110 (451)
                      ....+++...+.++|.|..-+...++++|.+++       ++|...++++..+.++|..+++.+.+++.. ..+|++.|.
T Consensus       115 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~  187 (447)
T d1pw4a_         115 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALY  187 (447)
T ss_dssp             SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-------THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTH
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHh-------hcccccccccccccchhhhhhhhhhhhHhhhhhcccccch
Confidence            456788888889999999999999999998874       468889999999999999999887776554 458999999


Q ss_pred             HHHHHHHHHHHHHH
Q 013020          111 VPAVIMLLSALSFF  124 (451)
Q Consensus       111 i~~i~~~i~li~f~  124 (451)
                      +.++..++..++.+
T Consensus       188 ~~~~~~~~~~~~~~  201 (447)
T d1pw4a_         188 MPAFCAILVALFAF  201 (447)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHH
Confidence            88776655544443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=2.8e-05  Score=75.25  Aligned_cols=113  Identities=10%  Similarity=-0.055  Sum_probs=85.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcchhhhHhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 013020          242 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ  321 (451)
Q Consensus       242 ~l~~~n~l~iii~~pl~~~~~~pl~~r~~~~~~~~s~~~ki~iG~~l~~~s~lv~~~~e~~~~~~~~~~g~~~~~~~~~~  321 (451)
                      ++.+...+...+..|+...+..+.-||           +-+.+|+++.+++.+..+++...                  .
T Consensus        63 ~~~s~~~~~~~~~~~~~G~l~Dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~~~------------------~  113 (447)
T d1pw4a_          63 FALSGISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILAAAVMLFMGFVPWA------------------T  113 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHCHHH------------------H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCch-----------HHHHHHHHHHHHHHhhccccchh------------------h
Confidence            455666666666677666654433332           23567888888887777665321                  2


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 013020          322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV  383 (451)
Q Consensus       322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~~l~~aiG~~l~~~l~~~~  383 (451)
                      .+.++++...++.++++....+....++.+..|++.|+..+|++....++|..+++.+....
T Consensus       114 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~  175 (447)
T d1pw4a_         114 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG  175 (447)
T ss_dssp             SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH
Confidence            46677888889999999999999999999999999999999999999999998888766553

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=1.3e-05  Score=75.83  Aligned_cols=94  Identities=14%  Similarity=0.140  Sum_probs=72.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhHHHhhcccCchhhhHHHHHH-hHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCC
Q 013020          322 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLS-GAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNI  400 (451)
Q Consensus       322 ~s~~wli~~y~l~~igEl~~~p~g~ef~~~~aP~~~kg~~~g~~-~l~~aiG~~l~~~l~~~~~~~s~~~~~~~w~~~~l  400 (451)
                      .+.++++...++.+++..+..+....++.+..|++.|+..+|+. .+..++|..+++.+.+...+..      +      
T Consensus       310 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~------g------  377 (417)
T d1pv7a_         310 TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI------G------  377 (417)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH------C------
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------C------
Confidence            45677788889999999999999999999999999999999975 4666788888887776654321      1      


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 013020          401 NKGHYDYYYWLLTALSMANFLYYLACCKAYG  431 (451)
Q Consensus       401 n~~~~~~~f~~la~l~lv~~~~~~~~~~~y~  431 (451)
                          ....|+..++++++..++.++..|+-+
T Consensus       378 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~  404 (417)
T d1pv7a_         378 ----FQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence                345677788888888777766665443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=95.62  E-value=0.003  Score=58.74  Aligned_cols=87  Identities=9%  Similarity=0.086  Sum_probs=72.0

Q ss_pred             chhHHHHHHHHHHhhcccccccchhhhcccCCCCCCCcchhhHHHHHHHHHH-HHHHHHHHHhhhhheeeeccCccchhh
Q 013020           32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV-FVSASSIVAVTCIVYIQDNLGWKVGFG  110 (451)
Q Consensus        32 ~~~~~~~~L~lialG~G~~k~ni~~~~~dqy~~~~~~~~~~~~~~~F~~fY~-~iNiGa~i~~~~~~~i~~~~g~~~~F~  110 (451)
                      +.+.+++...+.+++.|...+...++..+.+++       +.|.+.+...+. +.++|..+++.+.+++.++.||+..|.
T Consensus       311 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~  383 (417)
T d1pv7a_         311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV-------RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYL  383 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCG-------GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Confidence            456778888888999999999999999998874       357788888764 556999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 013020          111 VPAVIMLLSALSFFL  125 (451)
Q Consensus       111 i~~i~~~i~li~f~~  125 (451)
                      +.++..+++.++.++
T Consensus       384 ~~~~~~~~~~~~~~~  398 (417)
T d1pv7a_         384 VLGLVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888877777666544