Citrus Sinensis ID: 013029

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-
MISQFFVLSQRGDNIVFRDYRGEVQKGSAEIFFRKVKFWKDDGEEEAPPVFNVDGVNYFHVKVVGLLFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGGRKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGGRSIYDYRSSTGSGAVVLDDCNFHESVRLDSFDVDRTLSLVPPDGEFPVMNYRMTQEFKPPFRINTLVEEAGALKAEVIIKISAEFSASITANTIVVEMPLPKYTTRVSFGLEPGAVGQRTDFKEANRRLEWGLKKIVGGSEHTLRAKLTFSQESHGNITKEVGPVNMTFTIPMYNASKLQVKYLQIAKKSSTYNPYRWVRYVTQANSYVARI
cEEEEEEEEccccEEEEEcccccccccHHHHHHHHHcccccccccccccEEEEccEEEEEEEEccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHcccccccccEEcccccccccccccccccccccccccEEEEEEcccccccccEEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEEccccEEEEEEccccccccccccccccccccccccEEEccccccccccccccccccEEEEEcccccEEEEEEEEcccccccEEEEEEEEEcccEEEEEEEEEccccccccEEEEEEEEcccccccEEEEEEEcccccccEEEEEccccEEEEcccEEccccEEEEEEEEEEEcccccccccccccEEEEEEEcEEEccccEEEEEEEEEccccccccccEEEEEEcccEEEEc
cccEEEEEcccccEEEEEcccccccHHHHHHHHHHHHHcccccccccccEEEEccEEEEEEEEccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccEEEcccccccccHHHHccccccccccHccccEEccccccccccEEEEHHHHHEEEEEcccccEEEEEEEEEEEEEEEccccccEEEccccEEEEEccccccccccccccccEEEEEccEEEEEEEccccccccEEEEEcccccEEEEEEEccccccccEEEEEEEEEccccEEEEEEEEEEEcccccEccEEEEEEEccccccccEEEEEccccccEEEEcccccEEEEEEEEcccccEEEEEEEEccccccccccccccccEEEEEEEEEEEcccEEEEEEEEEEcccccccccEEEEEEccccEEEEc
MISQFFVLsqrgdnivfrdyrgevqkGSAEIFFRKVKFwkddgeeeappvfnvdgvnYFHVKVVGLLFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSyvfnepivvdavrlqplspaaifmqgtkrmpgtavtksvvanepggrkrEEIFVDIIEKISVTFsssgyiltseidgtIQMKSYLTGNPEIRLALnddlligkggrsiydyrsstgsgavvlddcnfhesvrldsfdvdrtlslvppdgefpvmnyrmtqefkppfriNTLVEEAGALKAEVIIKISAEFSASITANTIvvemplpkyttrvsfglepgavgqrtdFKEANRRLEWGLKkivggsehtLRAKLTfsqeshgnitkevgpvnmtftipmynaSKLQVKYLQIAKksstynpyrWVRYVTQANSYVARI
misqffvlsqrgdnivfrdyrgevqkgsaeIFFRKVKFWKDDGEEEAPPVFNVDGVNYFHVKVVGLLFVATTRVNVSPSLVLELLQRIARVIKDYLgvlnedslRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMqgtkrmpgtavtksvvanepggrkreEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGGRSIYDYRSSTGSGAVVLDDCNFHESvrldsfdvdrtlslvppdgefpvMNYRMTQEFKPPFRINTLVEEAGALKAEVIIKISAEFSASITANTIVVEMPLPKYTTRVSFglepgavgqrtdfkEANRRLEWGlkkivggsehtLRAKLtfsqeshgnitkevgpVNMTFTIPMYNASKLQVKYLQIAKksstynpyrwvRYVTQansyvari
MISQFFVLSQRGDNIVFRDYRGEVQKGSAEIFFRKVKFWKDDGEEEAPPVFNVDGVNYFHVKVVGLLFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGGRKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGGRSIYDYRSSTGSGAVVLDDCNFHESVRLDSFDVDRTLSLVPPDGEFPVMNYRMTQEFKPPFRINTLVEEAGALKAEVIIKISAEFSASITANTIVVEMPLPKYTTRVSFGLEPGAVGQRTDFKEANRRLEWGLKKIVGGSEHTLRAKLTFSQESHGNITKEVGPVNMTFTIPMYNASKLQVKYLQIAKKSSTYNPYRWVRYVTQANSYVARI
****FFVLSQRGDNIVFRDYRGEVQKGSAEIFFRKVKFWKDDGEEEAPPVFNVDGVNYFHVKVVGLLFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKR****AV*************REEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGGRSIYDYRSSTGSGAVVLDDCNFHESVRLDSFDVDRTLSLVPPDGEFPVMNYRMTQEFKPPFRINTLVEEAGALKAEVIIKISAEFSASITANTIVVEMPLPKYTTRVSFGLEPGAVGQRTDFKEANRRLEWGLKKIVGGSEHTLRAKLTFSQESHGNITKEVGPVNMTFTIPMYNASKLQVKYLQIAKKSSTYNPYRWVRYVTQANSYV***
MISQFFVLSQRGDNIVFRDYRGEVQKGSAEIFFRKVKFWKD**EEEAPPVFNVDGVNYFHVKVVGLLFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSLRKNFVLVYELLDEVIDFGYVQTTSTEV*****************************************VVANEPGGRKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDL********************VVLDDCNFHESVRLDSFDVDRTLSLVPPDGEFPVMNYRMTQEFKPPFRINTLVEEAGALKAEVIIKISAEFSASITANTIVVEMPLPKYTTRVSFG*********TDFKEANRRLEWGLKKIVGGSEHT******************VGPVNMTFTIPMYNASKLQVKYLQIAKKSSTYNPYRWVRYVTQANSYVARI
MISQFFVLSQRGDNIVFRDYRGEVQKGSAEIFFRKVKFWKDDGEEEAPPVFNVDGVNYFHVKVVGLLFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGGRKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGGRSIYDYRSSTGSGAVVLDDCNFHESVRLDSFDVDRTLSLVPPDGEFPVMNYRMTQEFKPPFRINTLVEEAGALKAEVIIKISAEFSASITANTIVVEMPLPKYTTRVSFGLEPGAVGQRTDFKEANRRLEWGLKKIVGGSEHTLRAKLTFSQESHGNITKEVGPVNMTFTIPMYNASKLQVKYLQIAKKSSTYNPYRWVRYVTQANSYVARI
MISQFFVLSQRGDNIVFRDYRGEVQKGSAEIFFRKVKFWKDDGEEEAPPVFNVDGVNYFHVKVVGLLFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAV***************KRMPGTAVTKSVVANEPGGRKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKG************SGAVVLDDCNFHESVRLDSFDVDRTLSLVPPDGEFPVMNYRMTQEFKPPFRINTLVEEAGALKAEVIIKISAEFSASITANTIVVEMPLPKYTTRVSFGLEPGAVGQRTDFKEANRRLEWGLKKIVGGSEHTLRAKLTFSQESH***TKEVGPVNMTFTIPMYNASKLQVKYLQIAKKSSTYNPYRWVRYVTQANSYVARI
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MISQFFVLSQRGDNIVFRDYRGEVQKGSAEIFFRKVKFWKDDGEEEAPPVFNVDGVNYFHVKVVGLLFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGGRKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGGRSIYDYRSSTGSGAVVLDDCNFHESVRLDSFDVDRTLSLVPPDGEFPVMNYRMTQEFKPPFRINTLVEEAGALKAEVIIKISAEFSASITANTIVVEMPLPKYTTRVSFGLEPGAVGQRTDFKEANRRLEWGLKKIVGGSEHTLRAKLTFSQESHGNITKEVGPVNMTFTIPMYNASKLQVKYLQIAKKSSTYNPYRWVRYVTQANSYVARI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query451 2.2.26 [Sep-21-2011]
Q9GPF0530 AP-4 complex subunit mu O yes no 0.982 0.835 0.319 9e-78
O00189453 AP-4 complex subunit mu-1 yes no 0.968 0.964 0.344 1e-76
Q29RY8452 AP-4 complex subunit mu-1 yes no 0.968 0.966 0.341 6e-75
Q9JKC7449 AP-4 complex subunit mu-1 yes no 0.968 0.973 0.343 1e-74
Q2PWT8453 AP-4 complex subunit mu-1 yes no 0.968 0.964 0.340 6e-73
Q9BXS5423 AP-1 complex subunit mu-1 no no 0.917 0.978 0.349 4e-69
Q2KJ81423 AP-1 complex subunit mu-1 no no 0.917 0.978 0.349 4e-69
P35602422 AP-1 complex subunit mu-1 yes no 0.915 0.978 0.343 5e-69
Q32Q06423 AP-1 complex subunit mu-1 no no 0.917 0.978 0.347 6e-69
P35585423 AP-1 complex subunit mu-1 no no 0.917 0.978 0.347 9e-69
>sp|Q9GPF0|AP4M_DICDI AP-4 complex subunit mu OS=Dictyostelium discoideum GN=apm4 PE=2 SV=1 Back     alignment and function desciption
 Score =  291 bits (744), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 171/536 (31%), Positives = 279/536 (52%), Gaps = 93/536 (17%)

Query: 1   MISQFFVLSQRGDNIVFRDYRGEVQKGSAEIFFRKVKFWKDDGEEEAPPVFNVDGVNYFH 60
           M SQFF+L+ +G+ I+F+DYR ++ K S EIFF+ V+  K     E  P FN+DG+NY +
Sbjct: 1   MFSQFFILNNKGETIIFKDYRFDISKDSNEIFFKHVQSMK----SEITPAFNIDGINYLY 56

Query: 61  VKVVGLLFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSLRKNFVLVYELLDEVID 120
           +K   + FV TTR+ VSPSL  ELL R +++I+DY   L E+++R NF+L+YELLDE++D
Sbjct: 57  IKKREMYFVFTTRLLVSPSLGFELLNRASKIIQDYTASLTEEAIRLNFILIYELLDELMD 116

Query: 121 FGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPG-------------- 166
           +G  Q+T TE LK++VF  P  + + +L+  S    F++ T ++                
Sbjct: 117 YGVPQSTGTETLKAFVFTPPKQIKSKQLESDSIIDNFLKATNKISVPPKQGVKPIHSGSK 176

Query: 167 --------------TAVTKSVVANEPGGRKR--------------------EEIFVDIIE 192
                         + V  ++V +  G                         EI++D+ E
Sbjct: 177 NSSSGGSSLSTNTVSKVVNNIVDSISGAATNLHNSTSGGGSGSGVTDADGDNEIYIDLCE 236

Query: 193 KISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGK--------------- 237
           +++V +SS+G IL +EI G IQMKSYL GNP + L L+ +                    
Sbjct: 237 RLTVLYSSNGTILRNEITGKIQMKSYLRGNPALSLGLSPEFTFKTIANRDESNENEIDNN 296

Query: 238 --GGRSIYDYRSSTGSGAVVLDDCNFHESVRLDSFDVDRTLSLVPPDGEFPVMNYRMTQE 295
             GG S     SS  +  +V DDC+FHE      F  + T++  PP G+F ++ YR++  
Sbjct: 297 NIGGVSNLSAPSSNTTSFIV-DDCSFHECAG-SGFQPNNTINFKPPQGDFTLLKYRISNN 354

Query: 296 FKPPFRINTLVEEAGALKAEVIIKISAEFSASITANTIVVEMPLPKYTTRVSFGLEPGAV 355
              PF + T +E     + ++++ I + FS  +  N I V +P+PK T  ++  L+ G+ 
Sbjct: 355 NYTPFLVKTNLESTIRNRFDLVVTIRSNFSNKVVPNFIFVSIPVPKSTKSLTHSLDYGSQ 414

Query: 356 GQRTDFK---EANRRLEWGLKKIVGGSEHTLRAKLTFSQESH-----------------G 395
            Q+ ++K   +A   + W +KK+ GG E  LR ++     +                   
Sbjct: 415 NQKVEYKQSTQAGNLVFWSIKKLRGGMETILRIQIHVDGATSSSSNNNQQQQQPQIDVGS 474

Query: 396 NITKEVGPVNMTFTIPMYNASKLQVKYLQIAKKSSTYNPYRWVRYVTQANSYVARI 451
            + KE+GP+ + F+IP ++ S LQ+K+L++    S  +P RW+RY+T + S+V+RI
Sbjct: 475 TLRKEIGPIGLEFSIPQFSCSTLQIKFLKML--GSNISPIRWIRYITDSKSFVSRI 528
Part of the AP-4 complex, an adaptor-related complex which might be implicated in vesicular transport between intracellular compartments appearing upon cell differentiation such as prespore vesicles (PSVs).
Dictyostelium discoideum (taxid: 44689)
>sp|O00189|AP4M1_HUMAN AP-4 complex subunit mu-1 OS=Homo sapiens GN=AP4M1 PE=1 SV=2 Back     alignment and function description
>sp|Q29RY8|AP4M1_BOVIN AP-4 complex subunit mu-1 OS=Bos taurus GN=AP4M1 PE=2 SV=1 Back     alignment and function description
>sp|Q9JKC7|AP4M1_MOUSE AP-4 complex subunit mu-1 OS=Mus musculus GN=Ap4m1 PE=2 SV=1 Back     alignment and function description
>sp|Q2PWT8|AP4M1_RAT AP-4 complex subunit mu-1 OS=Rattus norvegicus GN=Ap4m1 PE=1 SV=1 Back     alignment and function description
>sp|Q9BXS5|AP1M1_HUMAN AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1 PE=1 SV=3 Back     alignment and function description
>sp|Q2KJ81|AP1M1_BOVIN AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 PE=1 SV=3 Back     alignment and function description
>sp|P35602|AP1M_CAEEL AP-1 complex subunit mu-1-I OS=Caenorhabditis elegans GN=unc-101 PE=2 SV=2 Back     alignment and function description
>sp|Q32Q06|AP1M1_RAT AP-1 complex subunit mu-1 OS=Rattus norvegicus GN=Ap1m1 PE=1 SV=3 Back     alignment and function description
>sp|P35585|AP1M1_MOUSE AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query451
224067066446 predicted protein [Populus trichocarpa] 0.988 1.0 0.920 0.0
225458187451 PREDICTED: AP-4 complex subunit mu-1 [Vi 1.0 1.0 0.898 0.0
449476856451 PREDICTED: AP-4 complex subunit mu-1-lik 1.0 1.0 0.886 0.0
449460233451 PREDICTED: LOW QUALITY PROTEIN: AP-4 com 1.0 1.0 0.878 0.0
15233859451 AP-4 complex subunit mu-1 [Arabidopsis t 0.997 0.997 0.878 0.0
297803656451 clathrin adaptor complexes medium subuni 0.997 0.997 0.873 0.0
356552963451 PREDICTED: AP-4 complex subunit mu-1-lik 1.0 1.0 0.862 0.0
356552965446 PREDICTED: AP-4 complex subunit mu-1-lik 0.988 1.0 0.862 0.0
255638018451 unknown [Glycine max] 1.0 1.0 0.860 0.0
242046330450 hypothetical protein SORBIDRAFT_02g03953 0.997 1.0 0.849 0.0
>gi|224067066|ref|XP_002302340.1| predicted protein [Populus trichocarpa] gi|222844066|gb|EEE81613.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  857 bits (2215), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/451 (92%), Positives = 436/451 (96%), Gaps = 5/451 (1%)

Query: 1   MISQFFVLSQRGDNIVFRDYRGEVQKGSAEIFFRKVKFWKDDGEEEAPPVFNVDGVNYFH 60
           MISQFFVLSQRGDNIVFRDYRGEV KGSAEIFFRKVKFWK+DGEEEAPPVFNVDGVNYFH
Sbjct: 1   MISQFFVLSQRGDNIVFRDYRGEVPKGSAEIFFRKVKFWKEDGEEEAPPVFNVDGVNYFH 60

Query: 61  VKVVGLLFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSLRKNFVLVYELLDEVID 120
           VKVVGLLFVATTR NVSPSLVLELLQRIARVIKDYLGVLNEDSLRKNFVLVYELLDEVID
Sbjct: 61  VKVVGLLFVATTRANVSPSLVLELLQRIARVIKDYLGVLNEDSLRKNFVLVYELLDEVID 120

Query: 121 FGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGG 180
           FGYVQTTSTE+LKSYVFNEP+VVDA RLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGG
Sbjct: 121 FGYVQTTSTELLKSYVFNEPLVVDAARLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGG 180

Query: 181 RKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGGR 240
           RKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYL+GNPEIRLALN+DL IG+G  
Sbjct: 181 RKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLSGNPEIRLALNEDLSIGRG-- 238

Query: 241 SIYDYRSSTGSGAVVLDDCNFHESVRLDSFDVDRTLSLVPPDGEFPVMNYRMTQEFKPPF 300
              DYRSS GSG+V+LDDCNFHESVRLD+FD+DRTL+LVPPDGEFPVMNYRMTQEFKPPF
Sbjct: 239 ---DYRSSFGSGSVILDDCNFHESVRLDNFDLDRTLTLVPPDGEFPVMNYRMTQEFKPPF 295

Query: 301 RINTLVEEAGALKAEVIIKISAEFSASITANTIVVEMPLPKYTTRVSFGLEPGAVGQRTD 360
           RINTL+EEAGALKAEVI+K+SAEF +SITANTI+V+MPLPKYTTRV+F LEPGA+GQ TD
Sbjct: 296 RINTLIEEAGALKAEVILKVSAEFPSSITANTIIVQMPLPKYTTRVNFELEPGALGQTTD 355

Query: 361 FKEANRRLEWGLKKIVGGSEHTLRAKLTFSQESHGNITKEVGPVNMTFTIPMYNASKLQV 420
           FKEANRRLEWGLKKIVGGSEHTLRAKLTFSQE HGNITKE GPV+MTFTIPMYNAS+LQV
Sbjct: 356 FKEANRRLEWGLKKIVGGSEHTLRAKLTFSQELHGNITKEAGPVSMTFTIPMYNASRLQV 415

Query: 421 KYLQIAKKSSTYNPYRWVRYVTQANSYVARI 451
           KYLQIAKKSSTYNPYRWVRYVTQANSYVARI
Sbjct: 416 KYLQIAKKSSTYNPYRWVRYVTQANSYVARI 446

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225458187|ref|XP_002281307.1| PREDICTED: AP-4 complex subunit mu-1 [Vitis vinifera] gi|302142544|emb|CBI19747.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449476856|ref|XP_004154854.1| PREDICTED: AP-4 complex subunit mu-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449460233|ref|XP_004147850.1| PREDICTED: LOW QUALITY PROTEIN: AP-4 complex subunit mu-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15233859|ref|NP_194186.1| AP-4 complex subunit mu-1 [Arabidopsis thaliana] gi|4220535|emb|CAA23008.1| clathrin coat assembly like protein [Arabidopsis thaliana] gi|7269305|emb|CAB79365.1| clathrin coat assembly like protein [Arabidopsis thaliana] gi|18176154|gb|AAL59993.1| putative clathrin coat assembly protein [Arabidopsis thaliana] gi|332659524|gb|AEE84924.1| AP-4 complex subunit mu-1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297803656|ref|XP_002869712.1| clathrin adaptor complexes medium subunit family protein [Arabidopsis lyrata subsp. lyrata] gi|297315548|gb|EFH45971.1| clathrin adaptor complexes medium subunit family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356552963|ref|XP_003544829.1| PREDICTED: AP-4 complex subunit mu-1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356552965|ref|XP_003544830.1| PREDICTED: AP-4 complex subunit mu-1-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|255638018|gb|ACU19324.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|242046330|ref|XP_002461036.1| hypothetical protein SORBIDRAFT_02g039530 [Sorghum bicolor] gi|241924413|gb|EER97557.1| hypothetical protein SORBIDRAFT_02g039530 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query451
TAIR|locus:2121944451 AT4G24550 "AT4G24550" [Arabido 0.997 0.997 0.878 4.3e-212
GENEDB_PFALCIPARUM|PF11_0202436 PF11_0202 "clathrin coat assem 0.960 0.993 0.404 3.6e-89
UNIPROTKB|Q8IIH2436 PF11_0202 "Clathrin coat assem 0.960 0.993 0.404 3.6e-89
DICTYBASE|DDB_G0276945530 apm4 "clathrin-adaptor medium 0.354 0.301 0.445 6.4e-79
ZFIN|ZDB-GENE-040718-421442 ap4m1 "adaptor-related protein 0.964 0.984 0.360 7.3e-75
ASPGD|ASPL0000069702454 AN7741 [Emericella nidulans (t 0.955 0.949 0.335 3.7e-71
UNIPROTKB|O00189453 AP4M1 "AP-4 complex subunit mu 0.968 0.964 0.346 3.7e-71
MGI|MGI:1337063449 Ap4m1 "adaptor-related protein 0.966 0.971 0.353 2.6e-70
UNIPROTKB|Q29RY8452 AP4M1 "AP-4 complex subunit mu 0.968 0.966 0.343 3.3e-70
UNIPROTKB|E2RED8452 AP4M1 "Uncharacterized protein 0.968 0.966 0.339 3.8e-69
TAIR|locus:2121944 AT4G24550 "AT4G24550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2050 (726.7 bits), Expect = 4.3e-212, P = 4.3e-212
 Identities = 396/451 (87%), Positives = 417/451 (92%)

Query:     1 MISQFFVLSQRGDNIVFRDYRGEVQKGSAEIFFRKVKFWKDDGEEEAPPVFNVDGVNYFH 60
             MISQFFVLSQRGDNIVFRDYR EV KGS E FFRKVKFWK+DG  EAPP+FNVDGVNYFH
Sbjct:     2 MISQFFVLSQRGDNIVFRDYRAEVPKGSTETFFRKVKFWKEDGNAEAPPIFNVDGVNYFH 61

Query:    61 VKVVGLLFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSLRKNFVLVYELLDEVID 120
             VKVVGL FVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDS RKNFVLVYELLDEVID
Sbjct:    62 VKVVGLYFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNFVLVYELLDEVID 121

Query:   121 FGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGG 180
             FGYVQTTSTEVLKSY+FNEPIVV   RLQP+ PAAIF QG KRMPGTAVTKSVVAN+PGG
Sbjct:   122 FGYVQTTSTEVLKSYIFNEPIVVSPARLQPIDPAAIFTQGAKRMPGTAVTKSVVANDPGG 181

Query:   181 RKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGGR 240
             R+REEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYL+GNPEIRLALN+DL IG+GGR
Sbjct:   182 RRREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLSGNPEIRLALNEDLNIGRGGR 241

Query:   241 SIYDYRSSTGSGAVVLDDCNFHESVRLDSFDVDRTLSLVPPDGEFPVMNYRMTQEFKPPF 300
             S+YDYRSS+GSG V+LDDCNFHESVRLDSFD DRTLSLVPPDGEFPVMNYRMTQEFKPPF
Sbjct:   242 SVYDYRSSSGSG-VILDDCNFHESVRLDSFDSDRTLSLVPPDGEFPVMNYRMTQEFKPPF 300

Query:   301 RINTLVEEAGALKAEVIIKISAEFSASITANTIVVEMPLPKYTTRVSFGLEPGAVGQRTD 360
              +NTL+EEAG LKAEVIIKI AEF + I ANTI V+MPLP YT+R SF LEPGA GQRTD
Sbjct:   301 HVNTLIEEAGRLKAEVIIKIRAEFPSDIIANTITVQMPLPNYTSRASFELEPGAAGQRTD 360

Query:   361 FKEANRRLEWGLKKIVGGSEHTLRAKLTFSQESHGNITKEVGPVNMTFTIPMYNASKLQV 420
             FKE+N+ LEW LKKIVGG EHTLRAKLTFSQE HGNITKE GPV+MTFTIPMYN SKLQV
Sbjct:   361 FKESNKMLEWNLKKIVGGGEHTLRAKLTFSQEFHGNITKEAGPVSMTFTIPMYNVSKLQV 420

Query:   421 KYLQIAKKSSTYNPYRWVRYVTQANSYVARI 451
             KYLQIAKKSS+YNPYRWVRYVTQANSYVARI
Sbjct:   421 KYLQIAKKSSSYNPYRWVRYVTQANSYVARI 451
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006810 "transport" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA;ISS
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0030125 "clathrin vesicle coat" evidence=ISS
GO:0005829 "cytosol" evidence=IDA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GENEDB_PFALCIPARUM|PF11_0202 PF11_0202 "clathrin coat assembly protein, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IIH2 PF11_0202 "Clathrin coat assembly protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0276945 apm4 "clathrin-adaptor medium chain AP-4" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040718-421 ap4m1 "adaptor-related protein complex 4, mu 1 subunit" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ASPGD|ASPL0000069702 AN7741 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|O00189 AP4M1 "AP-4 complex subunit mu-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1337063 Ap4m1 "adaptor-related protein complex AP-4, mu 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q29RY8 AP4M1 "AP-4 complex subunit mu-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RED8 AP4M1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P35602AP1M_CAEELNo assigned EC number0.34360.91570.9786yesno
O00189AP4M1_HUMANNo assigned EC number0.34470.96890.9646yesno
Q2PWT8AP4M1_RATNo assigned EC number0.34040.96890.9646yesno
Q29RY8AP4M1_BOVINNo assigned EC number0.34120.96890.9668yesno
Q9JKC7AP4M1_MOUSENo assigned EC number0.34340.96890.9732yesno
Q9HFE5AP1M1_SCHPONo assigned EC number0.32810.91350.9671yesno
Q9GPF0AP4M_DICDINo assigned EC number0.31900.98220.8358yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_II0960
hypothetical protein (446 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query451
cd09253271 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medi 1e-150
cd09251263 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medi 8e-82
pfam00928228 pfam00928, Adap_comp_sub, Adaptor complexes medium 1e-74
cd09250268 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medi 3e-63
cd07954239 cd07954, AP_MHD_Cterm, C-terminal domain of adapto 5e-55
cd09258270 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of med 2e-54
cd09259264 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of med 7e-50
cd09252248 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medi 4e-41
cd09261254 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of med 1e-15
cd09260254 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of med 2e-15
cd09255308 cd09255, AP-like_stonins_MHD, Mu homology domain ( 2e-14
cd09263314 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) 2e-11
cd09262309 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) 5e-08
cd09254232 cd09254, AP_delta-COPI_MHD, Mu homology domain (MH 3e-04
pfam01217142 pfam01217, Clat_adaptor_s, Clathrin adaptor comple 0.002
>gnl|CDD|211364 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medium Mu4 subunit in adaptor protein (AP) complex AP-4 Back     alignment and domain information 
 Score =  427 bits (1099), Expect = e-150
 Identities = 151/274 (55%), Positives = 201/274 (73%), Gaps = 7/274 (2%)

Query: 178 PGGRKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGK 237
               K+ EIFVD++E++SV FS++G +L SEIDG+IQMKSYL+GNPE+RLALN+DL+IGK
Sbjct: 5   SSQDKKNEIFVDVLERLSVVFSANGQVLNSEIDGSIQMKSYLSGNPELRLALNEDLVIGK 64

Query: 238 GGRSIYDYRSSTGSGAVVLDDCNFHESVRLDSFDVDRTLSLVPPDGEFPVMNYRMTQEFK 297
                        S AVVLDDCNFHE V L+ F+ DRTLSL PPDGEF +MNYR++ EFK
Sbjct: 65  RENR-------AYSSAVVLDDCNFHECVDLEEFESDRTLSLTPPDGEFTLMNYRISGEFK 117

Query: 298 PPFRINTLVEEAGALKAEVIIKISAEFSASITANTIVVEMPLPKYTTRVSFGLEPGAVGQ 357
           PPFR+   VEE    K E+++K+ A+F   +TA  +VV +PLPK T+  S  L  GA GQ
Sbjct: 118 PPFRVFPSVEETSPYKLELVLKLRADFPPKVTATNVVVRIPLPKGTSSASCELSSGASGQ 177

Query: 358 RTDFKEANRRLEWGLKKIVGGSEHTLRAKLTFSQESHGNITKEVGPVNMTFTIPMYNASK 417
             ++KE  +R+ W +KK  GG+EH+LR K+T S      + KE+GP+++TF IPMYN S 
Sbjct: 178 SAEYKEKEKRVVWNIKKFPGGTEHSLRIKITLSSPIPSAVRKEIGPISLTFEIPMYNVSG 237

Query: 418 LQVKYLQIAKKSSTYNPYRWVRYVTQANSYVARI 451
           LQVKYL+I++KSS+YNP+RWVRY+TQ++SYV R+
Sbjct: 238 LQVKYLRISEKSSSYNPHRWVRYITQSSSYVCRL 271

AP complexes participate in the formation of intracellular coated transport vesicles and select cargo molecules for incorporation into the coated vesicles in the late secretory and endocytic pathways. There are four AP complexes, AP-1, AP-2, AP-3, and AP-4, described in various eukaryotic organisms. Each AP complex consists of four subunits: two large chains (one each of gamma/alpha/delta/epsilon and beta1-4, respectively), a medium mu chain (mu1-4), and a small sigma chain (sigma1-4). Each of the four subunits from the different AP complexes exhibits similarity with each other. This family corresponds to the C-terminal domain of heterotetrameric adaptor protein complex 4 (AP-4) medium mu4 subunit. AP-4 plays a role in signal-mediated trafficking of integral membrane proteins in mammalian cells. Unlike other AP complexes, AP-4 is found only in mammals and plants. It is believed to be part of a nonclathrin coat, since it might function independently of clathrin, a scaffolding protein participating in the formation of coated vesicles. Recruitment of AP-4 to the trans-Golgi network (TGN) membrane is regulated by a small GTPase, ADP-ribosylation factor 1 (ARF1) or a related protein. Membrane-anchored cargo molecules interact with adaptors through short sorting signals in their cytosolic segments. One of the most important sorting signals binding to mu subunits of AP complexes are tyrosine-based endocytotic signals, which are of the form Y-X-X-Phi, where Y is tyrosine, X is any amino acid and Phi is a bulky hydrophobic residue that can be Leu, Ile, Met, Phe, or Val. However, AP-4 does not bind most canonical tyrosine-based signals except for two naturally occurring ones from the lysosomal membrane proteins CD63 and LAMP-2a. It binds YX [FYL][FL]E motif, where X can be any residue, from the cytosolic tails of amyloid precursor protein (APP) family members in a distinct way. Length = 271
>gnl|CDD|211362 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medium Mu2 subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-2 Back     alignment and domain information
>gnl|CDD|216199 pfam00928, Adap_comp_sub, Adaptor complexes medium subunit family Back     alignment and domain information
>gnl|CDD|211361 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medium Mu1 subunit in clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211360 cd07954, AP_MHD_Cterm, C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD) Back     alignment and domain information
>gnl|CDD|211369 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of medium Mu1A subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211370 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of medium Mu1B subunit in epithelial cell-specific clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211363 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medium Mu3 subunit in adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211372 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of medium Mu3B subunit in neuron-specific adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211371 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of medium Mu3A subunit in ubiquitously expressed adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211366 cd09255, AP-like_stonins_MHD, Mu homology domain (MHD) of adaptor-like proteins (AP-like), stonins Back     alignment and domain information
>gnl|CDD|211374 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-2 Back     alignment and domain information
>gnl|CDD|211373 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-1 (also called Stoned B-like factor) Back     alignment and domain information
>gnl|CDD|211365 cd09254, AP_delta-COPI_MHD, Mu homology domain (MHD) of adaptor protein (AP) coat protein I (COPI) delta subunit Back     alignment and domain information
>gnl|CDD|110234 pfam01217, Clat_adaptor_s, Clathrin adaptor complex small chain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 451
KOG0938446 consensus Adaptor complexes medium subunit family 100.0
KOG0937424 consensus Adaptor complexes medium subunit family 100.0
KOG2740418 consensus Clathrin-associated protein medium chain 100.0
PF00928262 Adap_comp_sub: Adaptor complexes medium subunit fa 100.0
KOG2635512 consensus Medium subunit of clathrin adaptor compl 100.0
KOG2677922 consensus Stoned B synaptic vesicle biogenesis pro 100.0
PF01217141 Clat_adaptor_s: Clathrin adaptor complex small cha 99.95
COG5030152 APS2 Clathrin adaptor complex, small subunit [Intr 99.81
KOG3343175 consensus Vesicle coat complex COPI, zeta subunit 99.77
KOG0934145 consensus Clathrin adaptor complex, small subunit 99.7
KOG0936182 consensus Clathrin adaptor complex, small subunit 99.68
KOG0935143 consensus Clathrin adaptor complex, small subunit 99.68
COG5541187 RET3 Vesicle coat complex COPI, zeta subunit [Post 99.33
PF10291257 muHD: Muniscin C-terminal mu homology domain; Inte 99.12
PF03164415 Mon1: Trafficking protein Mon1; InterPro: IPR00435 94.47
PF15001189 AP-5_subunit_s1: AP-5 complex subunit sigma-1 92.81
KOG0997523 consensus Uncharacterized conserved protein Sand [ 92.53
PF08923119 MAPKK1_Int: Mitogen-activated protein kinase kinas 92.18
PF1377483 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3 86.77
COG5122134 TRS23 Transport protein particle (TRAPP) complex s 82.82
PF04099142 Sybindin: Sybindin-like family ; InterPro: IPR0072 81.94
KOG0781 587 consensus Signal recognition particle receptor, al 81.32
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-103  Score=736.39  Aligned_cols=436  Identities=33%  Similarity=0.628  Sum_probs=386.6

Q ss_pred             CeEEEEEEeCCCCEEEEEeccCCCCcchHHHHHHHhcccccCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEeccCCCHHH
Q 013029            1 MISQFFVLSQRGDNIVFRDYRGEVQKGSAEIFFRKVKFWKDDGEEEAPPVFNVDGVNYFHVKVVGLLFVATTRVNVSPSL   80 (451)
Q Consensus         1 MI~~ifIl~~~G~~li~r~y~~~~~~~~~e~f~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~l~~v~~~~~~~n~~~   80 (451)
                      ||+++||+|.+|++|+.|.||++..++..|+|+-+++..    ....+|+..+++++|+|++.++||++++|++|.|.+.
T Consensus         1 misglfi~n~rGevlink~fr~dlkrs~~diFRv~vi~n----~d~r~PV~~igsttf~~~r~~nl~lvaitksN~Nva~   76 (446)
T KOG0938|consen    1 MISGLFIYNLRGEVLINKTFRDDLKRSIVDIFRVQVINN----LDVRSPVLTIGSTTFHHIRSSNLWLVAITKSNANVAA   76 (446)
T ss_pred             CcceEEEEeccCcEEEehhhhhhhhhhHHHHHHHhhhhc----cccCCCeeEecceeEEEEeeccEEEEEEecCCCchhh
Confidence            999999999999999999999999999999999999872    4678899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccCHHHHHhhHHHHHHHHHHhhcCCeeeeechHhhheeeecCceeccccccCCCCCceeee-c
Q 013029           81 VLELLQRIARVIKDYLGVLNEDSLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFM-Q  159 (451)
Q Consensus        81 ~~~~L~~~~~~l~~y~~~l~e~~i~~n~~~v~~lldE~id~G~p~~t~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~-~  159 (451)
                      +++||..+.+++..|||.++|+.|++||.+|||+||||+|+||||+|++++|+.++..++...+...+   .++.-+. |
T Consensus        77 v~eFl~kl~avm~aYfgk~~Eeaiknnf~lI~ElLDemld~G~pqnte~~al~~~is~~~Vrs~g~~l---s~k~s~~sq  153 (446)
T KOG0938|consen   77 VFEFLYKLDAVMNAYFGKDREEAIKNNFVLIYELLDEMLDFGIPQNTEPNALKAQISQKGVRSMGGVL---SSKSSPTSQ  153 (446)
T ss_pred             HHHHHHHHHHHHHHHhcccchhhhhhceEeHHHHHHHHHhcCCCccCChhHHHhhhhhhhhhcccccc---CCcCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999987765432211   0000000 0


Q ss_pred             ccccCCCcccccccccCCCCC--cccceEEEEEEEeEEEEEcCCccEEEEEEEEEEEEEEeecCCceeEEEeccccccc-
Q 013029          160 GTKRMPGTAVTKSVVANEPGG--RKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIG-  236 (451)
Q Consensus       160 ~~~~~~s~a~~~~~~~~~~~~--~~~nEi~vdV~E~i~~~~~~~G~v~~~~V~G~i~~~s~LsG~P~~~l~ln~~~~~~-  236 (451)
                      .... -+...++++ +||++|  |+|||+|+||+|++|.+++++|++++++|+|.|.|+++|||||+|+++|||...++ 
T Consensus       154 ~~~~-~ssqv~G~i-~WRr~Gi~ykknevfldvvErvNlLmS~~GnVLrs~VsG~V~mk~~LSGmPeckfGlNDkl~~e~  231 (446)
T KOG0938|consen  154 ATEL-RSSQVTGKI-GWRREGIKYKKNEVFLDVVERVNLLMSSDGNVLRSDVSGTVDMKTHLSGMPECKFGLNDKLGMES  231 (446)
T ss_pred             cccc-ccccccccc-ccccccceeccceeEeEehheeeeEEcCCCCEEEeecccEEEEEEeccCCcccccccCcccceee
Confidence            0000 011122344 477755  79999999999999999999999999999999999999999999999999998877 


Q ss_pred             cCCCcccc-----ccCCCCCCcEEeeccccccccCCCCccCCccEEEeCCCCeEEEEEEeecCCCCCCeEEEEEEEEcCc
Q 013029          237 KGGRSIYD-----YRSSTGSGAVVLDDCNFHESVRLDSFDVDRTLSLVPPDGEFPVMNYRMTQEFKPPFRINTLVEEAGA  311 (451)
Q Consensus       237 ~~~~~~~~-----~~~~~~~~~~~l~d~~fH~cV~~~~~~~~~~i~F~PPdG~F~Lm~Yr~~~~~~~P~~v~~~~~~~~~  311 (451)
                      ++++.+.+     ..+.++...+.|+||+||+||++++|++++.|+|+||||+|+||+||+..++.+||++.|.++..|.
T Consensus       232 kq~esks~~~n~~~~sks~~g~v~leDc~FHqCV~L~kFn~eh~IsFvPPDGe~ELMkYr~~enInlPFrV~PiV~el~r  311 (446)
T KOG0938|consen  232 KQSESKSDFGNKNFPSKSGKGSVLLEDCTFHQCVRLDKFNSEHIISFVPPDGEFELMKYRVTENINLPFRVTPIVTELGR  311 (446)
T ss_pred             ccccccccccccCCCcccCCceEEeeccchheeeccccccccceEEEeCCCCceEeEeeeeccCcccceEeeeheecccc
Confidence            33333332     1233455569999999999999999999999999999999999999999999999999999999998


Q ss_pred             eEEEEEEEEeeecCCcceeeeEEEEecCCCCceeEEEEEcCCCCcceEEEeCCCcEEEEEeCeecCCceeEEEEEEEecc
Q 013029          312 LKAEVIIKISAEFSASITANTIVVEMPLPKYTTRVSFGLEPGAVGQRTDFKEANRRLEWGLKKIVGGSEHTLRAKLTFSQ  391 (451)
Q Consensus       312 ~~~e~~l~l~~~~~~~~~~~~v~i~iplP~~~~~~~~~~~~g~~~~~~~~~~~~~~l~W~I~~~~~~~~~~l~~~~~~~~  391 (451)
                      .++||.+.+++.|++++.+.+|+++||+|+++..+.+.++.|.    |+|.+++++++|+|++++|.+|.+|+|++++.+
T Consensus       312 ~kie~ri~iks~f~~kl~a~~v~~rIPvP~ntv~~n~~v~~Gk----aky~psen~ivWki~kf~G~tE~tlsAevels~  387 (446)
T KOG0938|consen  312 TKIEYRITIKSLFPPKLLAKDVVVRIPVPPNTVKCNISVSNGK----AKYVPSENAIVWKINKFNGLTESTLSAEVELSD  387 (446)
T ss_pred             eeEEEEEEEeccCCchhhhcceEEEecCCCccccceeEEecCc----cccCcccceEEEEecccCCcccceeEEEEEecc
Confidence            9999999999999999999999999999999999999999998    999999999999999999999999999999987


Q ss_pred             CC-CCCCCCccCceEEEEeeCcccccccEEEEEEEeecCCCCCcccceEEEEecCcEEEe
Q 013029          392 ES-HGNITKEVGPVNMTFTIPMYNASKLQVKYLQIAKKSSTYNPYRWVRYVTQANSYVAR  450 (451)
Q Consensus       392 ~~-~~~~~~~~~pi~v~F~ip~~t~SGl~V~~l~v~~~~~~~~~~k~vrY~t~sg~Y~~R  450 (451)
                      .. +...|. .+||+++|++|||+.|||.|++|+|.+...+|+..|||||+|+||+|++|
T Consensus       388 Tt~nkq~Wt-rPPIsleFeV~MFt~SGL~VrylkV~e~~Sk~~~vkWVrYitkaGsyEiR  446 (446)
T KOG0938|consen  388 TTQNKQQWT-RPPISLEFEVPMFTNSGLVVRYLKVSEKDSKHRAVKWVRYITKAGSYEIR  446 (446)
T ss_pred             Ccccccccc-CCCceeEEeeeeecCCceEEEEEEEecccCCCceEEEEEEecccceeeeC
Confidence            65 455564 89999999999999999999999999976669999999999999999998

>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2677 consensus Stoned B synaptic vesicle biogenesis protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG3343 consensus Vesicle coat complex COPI, zeta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0934 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0936 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0935 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans Back     alignment and domain information
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain Back     alignment and domain information
>PF15001 AP-5_subunit_s1: AP-5 complex subunit sigma-1 Back     alignment and domain information
>KOG0997 consensus Uncharacterized conserved protein Sand [Function unknown] Back     alignment and domain information
>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases Back     alignment and domain information
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D Back     alignment and domain information
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses Back     alignment and domain information
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query451
1w63_M423 Ap1 Clathrin Adaptor Core Length = 423 2e-69
2bp5_M435 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 2e-69
2xa7_M446 Ap2 Clathrin Adaptor Core In Active Complex With Ca 6e-67
1i31_A314 Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, 1e-45
1bw8_A321 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 1e-45
1bxx_A285 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 1e-45
3ml6_A385 A Complex Between Dishevlled2 And Clathrin Adaptor 1e-45
1h6e_A288 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 2e-45
2pr9_A299 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 2e-45
4en2_M266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 2e-44
4emz_A266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 3e-42
3l81_A301 Crystal Structure Of Adaptor Protein Complex 4 (Ap- 5e-39
4ikn_A261 Crystal Structure Of Adaptor Protein Complex 3 (ap- 1e-14
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core Length = 423 Back     alignment and structure 
Iteration: 1

 Score =  259 bits (663), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 156/452 (34%), Positives = 244/452 (53%), Gaps = 38/452 (8%)
Query: 3   SQFFVLSQRGDNIVFRDYRGEVQKGSAEIFFRKVKFWKDDGEEEA--PPVFNVDGVNYFH 60
           S  +VL  +G  ++ R+YRG+V     E F   +     + EEE    P+    GV +  
Sbjct: 4   SAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILM----EKEEEGMLSPILAHGGVRFMW 59
Query: 61  VKVVGLLFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSLRKNFVLVYELLDEVID 120
           +K   L  VAT++ N   SLV   L ++ +V  +Y   L E+S+R NFV++YELLDE++D
Sbjct: 60  IKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMD 119
Query: 121 FGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGG 180
           FGY QTT +++L+ ++  E   ++               G  R P T VT +V     G 
Sbjct: 120 FGYPQTTDSKILQEFITQEGHKLET--------------GAPRPPAT-VTNAVSWRSEGI 164
Query: 181 RKRE-EIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGG 239
           + R+ E+F+D+IE +++  S++G +L SEI G+I+M+ +L+G PE+RL LND +L    G
Sbjct: 165 KYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTG 224
Query: 240 RSIYDYRSSTGSGAVVLDDCNFHESVRLDSFDVDRTLSLVPPDGEFPVMNYRMTQEFKPP 299
           R          S +V L+D  FH+ VRL  F+ DRT+S +PPDGEF +M+YR+    KP 
Sbjct: 225 RG--------KSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPL 276
Query: 300 FRINTLVEEAGALKAEVIIKISAEFSASITANTIVVEMPLPKYTTRVSFGLEPGAVGQRT 359
             I +++E+    + E ++K  ++F    TAN + + +P+P       F    G+V    
Sbjct: 277 IWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSV---- 332
Query: 360 DFKEANRRLEWGLKKIVGGSEHTLRAKLTF-SQESHGNITKEVGPVNMTFTIPMYNASKL 418
            +   N  + W +K   GG E+ +RA     S E+     K   P+++ F IP +  S +
Sbjct: 333 KWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAEDKEGKP--PISVKFEIPYFTTSGI 390
Query: 419 QVKYLQIAKKSSTYNPYRWVRYVTQANSYVAR 450
           QV+YL+I +KS  Y    WVRY+TQ   Y  R
Sbjct: 391 QVRYLKIIEKSG-YQAIPWVRYITQNGDYQLR 421
>pdb|2BP5|M Chain M, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Non-Canonical Internalization Peptide Vedyeqglsg Length = 435 Back     alignment and structure
>pdb|2XA7|M Chain M, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 446 Back     alignment and structure
>pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, Complexed With Egfr Internalization Peptide Fyralm At 2.5 A Resolution Length = 314 Back     alignment and structure
>pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Egfr Internalization Peptide Fyralm Length = 321 Back     alignment and structure
>pdb|1BXX|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Tgn38 Internalization Peptide Dyqrln Length = 285 Back     alignment and structure
>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2 Length = 385 Back     alignment and structure
>pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Ctla-4 Internalization Peptide Ttgvyvkmppt Length = 288 Back     alignment and structure
>pdb|2PR9|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Gabaa Receptor-Gamma2 Subunit-Derived Internalization Peptide Deeygyecl Length = 299 Back     alignment and structure
>pdb|4EN2|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|4EMZ|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|3L81|A Chain A, Crystal Structure Of Adaptor Protein Complex 4 (Ap-4) Mu4 Su Terminal Domain, In Complex With A Sorting Peptide From The Precursor Protein (App) Length = 301 Back     alignment and structure
>pdb|4IKN|A Chain A, Crystal Structure Of Adaptor Protein Complex 3 (ap-3) Mu3a Subunit C- Terminal Domain, In Complex With A Sorting Peptide From Tgn38 Length = 261 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query451
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 1e-115
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 1e-106
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 2e-87
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 5e-85
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 8e-72
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 2e-69
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 2e-29
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 4e-28
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 3e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Length = 435 Back     alignment and structure
 Score =  344 bits (882), Expect = e-115
 Identities = 137/453 (30%), Positives = 243/453 (53%), Gaps = 22/453 (4%)

Query: 1   MISQFFVLSQRGDNIVFRDYRGEVQKGSAEIFFRKVKFWKDDGEEEAPPVFNVDGVNYFH 60
           MI   F+ + +G+ ++ R YR ++ + + + F   V   +   ++   PV N+   ++FH
Sbjct: 1   MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHAR---QQVRSPVTNIARTSFFH 57

Query: 61  VKVVGLLFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSLRKNFVLVYELLDEVID 120
           VK   +   A T+ NV+ ++V E L ++  V+  Y G ++E++++ NFVL+YELLDE++D
Sbjct: 58  VKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILD 117

Query: 121 FGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGG 180
           FGY Q + T  LK+++  + I                 +   ++      +     E   
Sbjct: 118 FGYPQNSETGALKTFITQQGIKSQH----------QTKEEQSQITSQVTGQIGWRREGIK 167

Query: 181 RKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGGR 240
            +R E+F+D++E +++  S  G +L++ + G + MKSYL+G PE +  +ND ++I K G+
Sbjct: 168 YRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGK 227

Query: 241 SIYDYRSSTGSGAVVLDDCNFHESVRLDSFDVDRTLSLVPPDGEFPVMNYRMTQEFKPPF 300
              D  S +G  ++ +DDC FH+ VRL  FD +R++S +PPDGEF +M YR T++   PF
Sbjct: 228 GTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPF 287

Query: 301 RINTLVEEAGALKAEVIIKISAEFSASITANTIVVEMPLPKYTTRVSFGLEPGAVGQRTD 360
           R+  LV E G  K EV + I + F  S+ A  I V +P P  T+ V      G    +  
Sbjct: 288 RVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKG----KAK 343

Query: 361 FKEANRRLEWGLKKIVGGSEHTLRAKLTFSQESHGNITKEVGPVNMTFTIPMYNASKLQV 420
           +K +   + W +K++ G  E  + A++     +         P++M F +P +  S L+V
Sbjct: 344 YKASENAIVWKIKRMAGMKESQISAEIELLPTND-KKKWARPPISMNFEVP-FAPSGLKV 401

Query: 421 KYLQIAKKS---STYNPYRWVRYVTQANSYVAR 450
           +YL++ +     S ++  +WVRY+ ++  Y  R
Sbjct: 402 RYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 434
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 423 Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Length = 385 Back     alignment and structure
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Length = 314 Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Length = 301 Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Length = 266 Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 158 Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Length = 142 Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Length = 153 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query451
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 100.0
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 100.0
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 100.0
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 100.0
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 100.0
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 100.0
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 99.97
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 99.97
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 99.96
3g9h_A328 Suppressor of yeast profilin deletion; SYP1, MU, a 99.0
2nut_C196 Vesicle-trafficking protein SEC22B; human copii SE 88.45
2vx8_A169 Nucleoporin-like protein RIP, vesicle-associated m 88.05
3cpt_A143 Mitogen-activated protein kinase kinase 1- interac 87.48
4b93_A189 Vesicle-associated membrane protein 7; endocytosis 87.31
3cue_A219 Transport protein particle 23 kDa subunit; membran 85.98
4afi_A173 AP-3 complex subunit delta-1, vesicle-associated p 83.82
1nrj_A158 Signal recognition particle receptor alpha subunit 83.71
2j3t_C145 Trafficking protein particle complex subunit 1, tr 82.04
2fh5_A185 Signal recognition particle receptor alpha subunit 81.82
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Back     alignment and structure
Probab=100.00  E-value=3.9e-95  Score=750.01  Aligned_cols=430  Identities=32%  Similarity=0.637  Sum_probs=363.5

Q ss_pred             CeEEEEEEeCCCCEEEEEeccCCCCcchHHHHHHHhcccccCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEeccCCCHHH
Q 013029            1 MISQFFVLSQRGDNIVFRDYRGEVQKGSAEIFFRKVKFWKDDGEEEAPPVFNVDGVNYFHVKVVGLLFVATTRVNVSPSL   80 (451)
Q Consensus         1 MI~~ifIl~~~G~~li~r~y~~~~~~~~~e~f~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~l~~v~~~~~~~n~~~   80 (451)
                      ||++|||+|.+|+++++|+|+++.++..++.|++.+....   ...++|+++++++.|+|+++++|||+++++.++||++
T Consensus         1 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~---~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~   77 (435)
T 2vgl_M            1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHAR---QQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAM   77 (435)
T ss_dssp             CCCEEEEECTTCCEEEEEECSSSCCHHHHHHHHHHTTTCS---SCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHH
T ss_pred             CeEEEEEECCCCCEEEEEecCCCCChhHHHHHHHHHhccc---cCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHH
Confidence            9999999999999999999999888888899998887532   2468999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccCHHHHHhhHHHHHHHHHHhhcCCeeeeechHhhheeeecCceeccccccCCCCCceeeecc
Q 013029           81 VLELLQRIARVIKDYLGVLNEDSLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQG  160 (451)
Q Consensus        81 ~~~~L~~~~~~l~~y~~~l~e~~i~~n~~~v~~lldE~id~G~p~~t~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~  160 (451)
                      +++|||+|+++|++|||+++|++|++||++||++||||+|+|+|++|++++|+.++.+++++.+.....          +
T Consensus        78 ~le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~----------~  147 (435)
T 2vgl_M           78 VFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKE----------E  147 (435)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC----------------
T ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhccccccccccccc----------c
Confidence            999999999999999999999999999999999999999999999999999999999998875432100          0


Q ss_pred             cccCCCcccccccccCCCC--CcccceEEEEEEEeEEEEEcCCccEEEEEEEEEEEEEEeecCCceeEEEeccccccccC
Q 013029          161 TKRMPGTAVTKSVVANEPG--GRKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKG  238 (451)
Q Consensus       161 ~~~~~s~a~~~~~~~~~~~--~~~~nEi~vdV~E~i~~~~~~~G~v~~~~V~G~i~~~s~LsG~P~~~l~ln~~~~~~~~  238 (451)
                      .. .++.++.+++ +||+.  .|++|||||||+|+|+++++++|.+++++|.|+|.|+|+|||||+|+|+||++..++++
T Consensus       148 ~~-~~~~~~~~~i-~wr~~gi~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~ln~~~~~~~~  225 (435)
T 2vgl_M          148 QS-QITSQVTGQI-GWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQ  225 (435)
T ss_dssp             ------------C-CSSCSCCCCSSCEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECSSCCEEEEEECSSSCC---
T ss_pred             cc-cccccccccc-ccccccCCcCcceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeEEEEeCchhhcccc
Confidence            01 1112233444 47764  47999999999999999999999999999999999999999999999999998766543


Q ss_pred             CCccccccCCCCCCcEEeeccccccccCCCCccCCccEEEeCCCCeEEEEEEeecCCCCCCeEEEEEEEEcCceEEEEEE
Q 013029          239 GRSIYDYRSSTGSGAVVLDDCNFHESVRLDSFDVDRTLSLVPPDGEFPVMNYRMTQEFKPPFRINTLVEEAGALKAEVII  318 (451)
Q Consensus       239 ~~~~~~~~~~~~~~~~~l~d~~fH~cV~~~~~~~~~~i~F~PPdG~F~Lm~Yr~~~~~~~P~~v~~~~~~~~~~~~e~~l  318 (451)
                      +.......+.....++.|+||+|||||++++|+++|+|+|+||||+|+||+||++.+..+||.++|+++..|.+++||++
T Consensus       226 ~~~~~~~~~~~~~~~~~l~d~~fH~cV~~~~f~~~r~isF~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l  305 (435)
T 2vgl_M          226 GKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKV  305 (435)
T ss_dssp             --------------CCCCCEEEECTTEEEC-----CCEEECCCSEEEEEEEEEECSSCCCSEEEEEEEECCTTTEEEEEE
T ss_pred             cccccccccccccCceEccccccceeecHhHhccCceEEEECCCCcEEEEEEEecCCcCCCeEEEEEEEecCCCEEEEEE
Confidence            21100000111124678999999999999999999999999999999999999998889999999999987767899999


Q ss_pred             EEeeecCCcceeeeEEEEecCCCCceeEEEEEcCCCCcceEEEeCCCcEEEEEeCeecCCceeEEEEEEEeccCCCCCCC
Q 013029          319 KISAEFSASITANTIVVEMPLPKYTTRVSFGLEPGAVGQRTDFKEANRRLEWGLKKIVGGSEHTLRAKLTFSQESHGNIT  398 (451)
Q Consensus       319 ~l~~~~~~~~~~~~v~i~iplP~~~~~~~~~~~~g~~~~~~~~~~~~~~l~W~I~~~~~~~~~~l~~~~~~~~~~~~~~~  398 (451)
                      +++++|+++..++||.|+||+|+++.+++++++.|+    ++|++++++++|+|++++|+++++++|++++.+..... .
T Consensus       306 ~~~~~~~~~~~~~~V~I~IP~P~~~~~~~~~~~~G~----~~y~~~~~~l~W~I~~~~~~~~~~l~~~~~l~~~~~~~-~  380 (435)
T 2vgl_M          306 VIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGK----AKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKK-K  380 (435)
T ss_dssp             EEEECSCTTSEEEEEEEEEECCSSCCCEEEEESSSE----EEEETTTTEEEEEEEEEETTCEEEEEEEEECCCCSCSC-C
T ss_pred             EEeCCCCCCceeeEEEEEEECCCCCCCceEEeccee----EEEccCCCEEEEEeccCCCCCCEEEEEEEEecCCCcCc-c
Confidence            999999988899999999999999999999998888    99999999999999999999999999999998643222 2


Q ss_pred             CccCceEEEEeeCcccccccEEEEEEEeec---CCCCCcccceEEEEecCcEEEeC
Q 013029          399 KEVGPVNMTFTIPMYNASKLQVKYLQIAKK---SSTYNPYRWVRYVTQANSYVARI  451 (451)
Q Consensus       399 ~~~~pi~v~F~ip~~t~SGl~V~~l~v~~~---~~~~~~~k~vrY~t~sg~Y~~R~  451 (451)
                      ..++||+|+|++| +++|||+|++|++.++   ..+|+|+|||||+|+||+|++|+
T Consensus       381 ~~~~pi~v~F~i~-~t~Sgl~V~~l~v~~~~~~~~~y~~~kwVrY~t~sg~y~~R~  435 (435)
T 2vgl_M          381 WARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC  435 (435)
T ss_dssp             CCCCCEEEEEEES-SCTTCCCEEEEEEECSSSSCBGGGSEEEEEEEEEEEEEEECC
T ss_pred             cCCCcEEEEEEEE-ecccccEEEEEEEeccccccCCCCCcCceEEEEeCCeEEEcC
Confidence            3489999999999 9999999999999987   23599999999999999999996
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Back     alignment and structure
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A Back     alignment and structure
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A Back     alignment and structure
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A Back     alignment and structure
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A Back     alignment and structure
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens} Back     alignment and structure
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4 Back     alignment and structure
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus} Back     alignment and structure
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 451
d2pr9a1277 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin s 3e-82
d2vglm2141 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat ass 8e-41
d2vgls_142 d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assem 9e-28
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 277 Back     information, alignment and structure

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  253 bits (646), Expect = 3e-82
 Identities = 90/272 (33%), Positives = 152/272 (55%), Gaps = 9/272 (3%)

Query: 182 KREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGGRS 241
           +R E+F+D++E +++  S  G +L++ + G + MKSYL+G PE +  +ND ++I K G+ 
Sbjct: 11  RRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKG 70

Query: 242 IYDYRSSTGSGAVVLDDCNFHESVRLDSFDVDRTLSLVPPDGEFPVMNYRMTQEFKPPFR 301
             D  S +G  ++ +DDC FH+ VRL  FD +R++S +PPDGEF +M YR T++   PFR
Sbjct: 71  TADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFR 130

Query: 302 INTLVEEAGALKAEVIIKISAEFSASITANTIVVEMPLPKYTTRVSFGLEPGAVGQRTDF 361
           +  LV E G  K EV + I + F  S+ A  I V +P P  T+ V      G       +
Sbjct: 131 VIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKA----KY 186

Query: 362 KEANRRLEWGLKKIVGGSEHTLRAKLTFSQESHGNITKEVGPVNMTFTIPMYNASKLQVK 421
           K +   + W +K++ G  E  + A++     +         P++M F +P +  S L+V+
Sbjct: 187 KASENAIVWKIKRMAGMKESQISAEIELLPTNDKK-KWARPPISMNFEVP-FAPSGLKVR 244

Query: 422 YLQIAKKS---STYNPYRWVRYVTQANSYVAR 450
           YL++ +     S ++  +WVRY+ ++  Y  R
Sbjct: 245 YLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 276

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query451
d2pr9a1277 Second domain of Mu2 adaptin subunit (ap50) of ap2 100.0
d2vglm2141 Mu2 adaptin (clathrin coat assembly protein AP50) 100.0
d2vgls_142 Sigma2 adaptin (clathrin coat assembly protein AP1 99.96
d3cpta1116 MEK binding partner 1, MP1 {Human (Homo sapiens) [ 94.14
d2fh5a1129 Signal recognition particle receptor alpha subunit 90.37
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=9.8e-65  Score=491.69  Aligned_cols=271  Identities=33%  Similarity=0.660  Sum_probs=230.6

Q ss_pred             cCCCC--CcccceEEEEEEEeEEEEEcCCccEEEEEEEEEEEEEEeecCCceeEEEeccccccccCCCccccccCCCCCC
Q 013029          175 ANEPG--GRKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGGRSIYDYRSSTGSG  252 (451)
Q Consensus       175 ~~~~~--~~~~nEi~vdV~E~i~~~~~~~G~v~~~~V~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~~~~~  252 (451)
                      +||+.  .|++|||||||+|+++++++++|.+++++|.|+|.|+|+|+|+|+|+|+||++..+++......+..+..+..
T Consensus         2 ~WR~~~i~y~~NEi~vDV~E~i~~~~~~~G~~~~~~V~G~I~~~s~LsG~P~~~l~Ln~~~~~~~~~~~~~~~~~~~~~~   81 (277)
T d2pr9a1           2 GWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQ   81 (277)
T ss_dssp             TTSCSCCCCSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSSCEEEEEESBC------------------CC
T ss_pred             CccCCCCcccCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEecCCCCeEEEEecchhhcccccccccccccccccC
Confidence            47774  4799999999999999999999999999999999999999999999999999987776544333334445667


Q ss_pred             cEEeeccccccccCCCCccCCccEEEeCCCCeEEEEEEeecCCCCCCeEEEEEEEEcCceEEEEEEEEeeecCCcceeee
Q 013029          253 AVVLDDCNFHESVRLDSFDVDRTLSLVPPDGEFPVMNYRMTQEFKPPFRINTLVEEAGALKAEVIIKISAEFSASITANT  332 (451)
Q Consensus       253 ~~~l~d~~fH~cV~~~~~~~~~~i~F~PPdG~F~Lm~Yr~~~~~~~P~~v~~~~~~~~~~~~e~~l~l~~~~~~~~~~~~  332 (451)
                      ++.|+||+||+||+++.|+++|.|+|+||||+|+||+||+..+..+||.+.++++..+..++++.++++++++.+..++|
T Consensus        82 ~~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Y~~~~~~~~P~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~  161 (277)
T d2pr9a1          82 SIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQK  161 (277)
T ss_dssp             CBCCSEEEECTTSBCC-----CCEEECCCSEEEEEEEEEECSSCCCCEEEEEEEEEETTTEEEEEEEEEECSCTTCEEEE
T ss_pred             ceEccceeeeeccccccccccceEeecCCCCcEEEEEEEcCCCcCCCcEEEEEEEeccCcEEEEEEEEEeccCCCeeeeE
Confidence            88999999999999999999999999999999999999999888999999999988777789999999999999999999


Q ss_pred             EEEEecCCCCceeEEEEEcCCCCcceEEEeCCCcEEEEEeCeecCCceeEEEEEEEeccCCCCCCCCccCceEEEEeeCc
Q 013029          333 IVVEMPLPKYTTRVSFGLEPGAVGQRTDFKEANRRLEWGLKKIVGGSEHTLRAKLTFSQESHGNITKEVGPVNMTFTIPM  412 (451)
Q Consensus       333 v~i~iplP~~~~~~~~~~~~g~~~~~~~~~~~~~~l~W~I~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pi~v~F~ip~  412 (451)
                      |.|+||+|.++..++++.+.|+    ++|++++++++|+|++++++++++|+|++++.+...... ..++||+|+|++| 
T Consensus       162 v~I~iP~P~~~~~~~~~~~~G~----~~y~~~~~~l~W~I~k~~~~~~~~l~~~~~~~~~~~~~~-~~~~pi~v~F~ip-  235 (277)
T d2pr9a1         162 IEVRIPTPLNTSGVQVICMKGK----AKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKK-WARPPISMNFEVP-  235 (277)
T ss_dssp             EEEEEECCTTEEEEEEEESSSE----EEEEGGGTEEEEEEEEEETTCEEEEEEEEEECCCCSSSC-CCCCCEEEEEEES-
T ss_pred             EEEEeeCCCcccCceEEecCce----EEEeccCCEEEEecccccCCccceEEEEEEeccCCCCcc-ccCCcEEEEEEec-
Confidence            9999999999999999998888    999999999999999999999999999999987654433 3478999999999 


Q ss_pred             ccccccEEEEEEEeecC---CCCCcccceEEEEecCcEEEeC
Q 013029          413 YNASKLQVKYLQIAKKS---STYNPYRWVRYVTQANSYVARI  451 (451)
Q Consensus       413 ~t~SGl~V~~l~v~~~~---~~~~~~k~vrY~t~sg~Y~~R~  451 (451)
                      +++|||+|++|+|.+..   .+|+|+|||||+|+||+|++|+
T Consensus       236 ~t~Sgl~V~~l~v~~~~~~~~~~~~~k~vrY~t~sg~Y~~R~  277 (277)
T d2pr9a1         236 FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC  277 (277)
T ss_dssp             SCTTCCCEEEEEEECSSSSCCGGGSEEEEEEEEEEEEEEECC
T ss_pred             ccccceEEEEEEEeccccCCCCCCCCCCEEEEEECCCEEECC
Confidence            89999999999998753   3589999999999999999996
>d3cpta1 d.110.7.1 (A:3-118) MEK binding partner 1, MP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure