Citrus Sinensis ID: 013056

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450
Protein Sequence
MRRKNNLFLMVTGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCANSG
Secondary Structure (PSIPRED)
ccccccEEEEEcccccHHHHHcccHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHccccccccEEEcccccccHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHccccccccEEEcccccccHHHHHHHHHHHHHccccccEEEccccccccccccccccHHHHHHHHccccccccEEEEEcccccHHHHHHHHHHHHccccccEEEccccccccHHHHHHHHHHHccccccccccEEEcccccccHHHHHHHHHHHHcccccccEEEcccccccHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEcccccccHHHHccHHHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEccHHHHHHHccHccccccccccHHHHHHHHHccHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHccccHHHHHHHHHHHcccccccEEEEccccccHHHHHHHHHHHHHHcHHcccHHHEEccccHHccccccHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHccccccEEEccccccHHHHHHccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHHHHHcccccEEEcccccccHHHHHHHHHHHHHHHccccccEEEEcccccccHHHHHHHHHHHHHHcccccEEccccccccHHHHccc
Coil and Loop (DISEMBL)
mrrknnlflmvtgddvipyvyelPADLFDILLtclpplalqklqtkmdgddcgspdycfengrkrgrygnfNTVWKKLFKTRwsgftdqiepvdWQQRYWEAHVQGCLDEAAElvvlpsfrglisdinisdTILNYIGYEQQMNHLacdysklsyhcqqfgHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHcklspsfvEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSslsildlsgnsiggwlskydrsgplfslgagkslqSLRLLNLRGNNLCKADARDLGSalvhipnleildisdntieddgirsLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTlstlrrpptslsiadnnlgrfcansg
Flexible Loop (DISEMBL)
mrrknnlflmvtgdDVIPYVYELPADLFDILLTCLPPLALQKLQTKMDGDDCGSPDYCfengrkrgrygnfNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTlrrpptslsiadnnlgrfcansg
Low Complexity Region (SEG)
MRRKNNLFLMVTGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPssvvvelvsflssGRSLCSLKLRHCHLDRDFGRMVFsslleassslsildlsgnsIGGWLSKYDRSGPLFSLGAGKSLQSlrllnlrgnnlCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCANSG
Disordered region (IsUnstruct)
*****NLFLMVTGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLST***********************
Disordered Region (DISOPRED)
****NNLFLMVTGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMDGDDCGSPDY*F*NGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYE************LSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA***
Disordered Region (DISEMBL)
MRRKNNLFLMVTGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCANSG
Disordered Region (DISPRO)
**RKNNLFLMVTGDDVIPYVYELPADLFDILLTCLPPLALQKLQTK*******************GRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL********
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRRKNNLFLMVTGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCANSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	450	2.2.26 [Sep-21-2011]
Q4R642	501	T-complex-associated test	N/A	no	0.353	0.317	0.327	8e-06
Q5JU00	501	T-complex-associated test	yes	no	0.357	0.321	0.324	9e-06
A6H639	498	T-complex-associated test	yes	no	0.355	0.321	0.320	1e-05
Q5DU56	1064	Protein NLRC3 OS=Mus musc	no	no	0.335	0.141	0.290	0.0001
P10775	456	Ribonuclease inhibitor OS	no	no	0.328	0.324	0.269	0.0002
B0FPE9	1035	NACHT, LRR and PYD domain	no	no	0.411	0.178	0.307	0.0002
Q8K3Z0	1020	Nucleotide-binding oligom	no	no	0.393	0.173	0.264	0.0003
Q86W24	1093	NACHT, LRR and PYD domain	no	no	0.557	0.229	0.275	0.0006

>sp|Q4R642|TCTE1_MACFA T-complex-associated testis-expressed protein 1 OS=Macaca fascicularis GN=TCTE1 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 89/177 (50%), Gaps = 18/177 (10%)

Query: 269 LVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRS 328
           L + + +  +L   KL    +D D  R++  SLL+    L  LDLS N IG      DR 
Sbjct: 271 LAAAIKACHTLKIFKLTRSKVDDDKARIIIRSLLD-HPVLEELDLSHNLIG------DRG 323

Query: 329 GPLFSLGAGKSLQS--LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGI 386
               + GA K L    LR+LNL  N +    A+ L  AL H  NL  L++  N IED+G 
Sbjct: 324 ----ARGAAKLLNHSRLRVLNLANNQVRAPGAQSLAHALAHNTNLISLNLRLNCIEDEGG 379

Query: 387 RSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 443
           ++L  + +Q + +C  L  L+L   ELS    + LL  +  +    TS++++ N++G
Sbjct: 380 QALA-HALQ-TNKC--LTTLHLGGNELS-EPTATLLSQVLAINTTLTSINLSCNHIG 431

Macaca fascicularis (taxid: 9541)

>sp|Q5JU00|TCTE1_HUMAN T-complex-associated testis-expressed protein 1 OS=Homo sapiens GN=TCTE1 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 90/179 (50%), Gaps = 18/179 (10%)

Query: 267 VELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD 326
           + L + + +  +L   KL    +D D  R++  SLL+    L  LDLS N IG      D
Sbjct: 269 LSLAAAIKACHTLKIFKLTRSKVDDDKARIIIRSLLD-HPVLEELDLSQNLIG------D 321

Query: 327 RSGPLFSLGAGK--SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDD 384
           R     + GA K  S   LR+LNL  N +    A+ L  AL H  NL  L++  N IED+
Sbjct: 322 RG----ARGAAKLLSHSRLRVLNLANNQVRAPGAQSLAHALAHNTNLISLNLRLNCIEDE 377

Query: 385 GIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 443
           G ++L  + +Q + +C  L  L+L   ELS    + LL  +  +    TS++++ N++G
Sbjct: 378 GGQALA-HALQ-TNKC--LTTLHLGGNELS-EPTATLLSQVLAINTTLTSINLSCNHIG 431

Homo sapiens (taxid: 9606)

>sp|A6H639|TCTE1_MOUSE T-complex-associated testis-expressed protein 1 OS=Mus musculus GN=Tcte1 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 18/178 (10%)

Query: 269 LVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRS 328
           L + + +  +L   KL    +D D  R++  SLL+   +L  LDLS N IG      DR 
Sbjct: 269 LAATIKACHTLKIFKLTRSKVDDDKARILIRSLLD-HPALEELDLSHNLIG------DRG 321

Query: 329 GPLFSLGAGK--SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGI 386
               +  A K  S   LR+LNL  N L    A+ L  AL H  NL  L++  N IED+G 
Sbjct: 322 ----ARAAAKLLSHSRLRVLNLANNQLQAPGAQSLAHALAHNTNLVFLNLRLNCIEDEGG 377

Query: 387 RSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 444
           +++      A E    L  L+L   +LS    + LL  + T+     SL+++ N++G+
Sbjct: 378 QAI----AHALETNKCLSVLHLGGNKLS-EPTATLLSQMLTVNTTLVSLNLSCNHIGQ 430

Mus musculus (taxid: 10090)

>sp|Q5DU56|NLRC3_MOUSE Protein NLRC3 OS=Mus musculus GN=Nlrc3 PE=2 SV=2

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 14/165 (8%)

Query: 266 VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 325
           V  L+  L S ++L SL LR   +  + G    +  L  +++L  LDL+ N +      +
Sbjct: 822 VTVLMRALCSNQTLSSLNLRENSISPE-GAQALTQALCRNNTLKHLDLTANLL------H 874

Query: 326 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDG 385
           DR     ++  G++  SL  L+L+ N +    AR LG AL     L  LD+ +N I D+G
Sbjct: 875 DRGAQAIAVAVGEN-HSLTHLHLQWNFIQAGAARALGQALQLNRTLTTLDLQENAIGDEG 933

Query: 386 IRSLIPYFVQASERCN-PLVELYLENCELSGRGVSQLLDTLSTLR 429
             S     V  + + N  L+ LYL+   +  +G   L + L+  R
Sbjct: 934 ASS-----VAGALKVNTTLIALYLQVASIGSQGAQALGEALTVNR 973

May modulate T-cell activation. Decreases the transcription of genes that are normally up-regulated after T-cell stimulation. Delays degradation of NFKBIA/IKBA.

Mus musculus (taxid: 10090)

>sp|P10775|RINI_PIG Ribonuclease inhibitor OS=Sus scrofa GN=RNH1 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 19/167 (11%)

Query: 286 HCHLDR---DFGRMV------FSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 336
            CHL++   ++ R+        +S+L A+ +L  L +S N IG      +    +   G 
Sbjct: 136 QCHLEKLQLEYCRLTAASCEPLASVLRATRALKELTVSNNDIG------EAGARVLGQGL 189

Query: 337 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 396
             S   L  L L    L  A+ +DL   +    +L  LD+  N + D GI  L P  +  
Sbjct: 190 ADSACQLETLRLENCGLTPANCKDLCGIVASQASLRELDLGSNGLGDAGIAELCPGLLSP 249

Query: 397 SERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 443
           + R   L  L+L  C+++  G   L   L   +     LS+A N LG
Sbjct: 250 ASR---LKTLWLWECDITASGCRDLCRVLQA-KETLKELSLAGNKLG 292

Ribonuclease inhibitor which inhibits RNASE1, RNASE2 and ANG. May play a role in redox homeostasis.

Sus scrofa (taxid: 9823)

>sp|B0FPE9|NALP3_MACMU NACHT, LRR and PYD domains-containing protein 3 OS=Macaca mulatta GN=NLRP3 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 91/208 (43%), Gaps = 23/208 (11%)

Query: 245 HKIENLSIDISSFIENCPSSVV--------VELVS-FLSSGRSLCSLKLRHCHLDRDFGR 295
           H++E+LS+    F+ N P            +++V   L    + CS +L + HL   F R
Sbjct: 674 HRVESLSL---GFLHNMPKEEEEEEKEGRHLDMVQCVLPGSHAACSHRLVNSHLTSSFCR 730

Query: 296 MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCK 355
            +FS +L  S SL+ LDLS NS+G      D    +          ++R L L    L  
Sbjct: 731 GLFS-VLSTSQSLTELDLSDNSLG------DPGMRVLCETLQHPDCNIRRLWLGRCGLSH 783

Query: 356 ADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 415
               D+   L     L  LD+SDN + D GIR L          CN L +L+L +C L+ 
Sbjct: 784 ECCFDISLVLSSNQKLVELDLSDNALGDFGIRLLCVGLKHL--LCN-LKKLWLVSCCLTS 840

Query: 416 RGVSQLLDTLSTLRRPPTSLSIADNNLG 443
                L   LST  R  T L + +N LG
Sbjct: 841 ACCQDLASVLST-SRSLTRLYVGENALG 867

May function as an inducer of apoptosis. Interacts selectively with ASC and this complex may function as an upstream activator of NF-kappa-B signaling. Inhibits TNF-alpha induced activation and nuclear translocation of RELA/NF-KB p65. Also inhibits transcriptional activity of RELA. Activates caspase-1 in response to a number of triggers including bacterial or viral infection which leads to processing and release of IL1B and IL18.

Macaca mulatta (taxid: 9544)

>sp|Q8K3Z0|NOD2_MOUSE Nucleotide-binding oligomerization domain-containing protein 2 OS=Mus musculus GN=Nod2 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 16/193 (8%)

Query: 234 CRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDF 293
            R+L     R  +++ L++  +   + C  S    +   L+  ++  SL++ + H+    
Sbjct: 812 ARTLVECALRCEQLQKLALFNNKLTDACACS----MAKLLAHKQNFLSLRVGNNHITAA- 866

Query: 294 GRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNL 353
           G  V +  L++++SL  L   GNS+G      D+     +       Q+L+ L+L GNN+
Sbjct: 867 GAEVLAQGLKSNTSLKFLGFWGNSVG------DKGTQALAEVVADH-QNLKWLSLVGNNI 919

Query: 354 CKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCEL 413
               A  L   L    +LE L + +N I D+G+ SL     +  +R + L  L L N  +
Sbjct: 920 GSMGAEALALMLEKNKSLEELCLEENHICDEGVYSL----AEGLKRNSTLKFLKLSNNGI 975

Query: 414 SGRGVSQLLDTLS 426
           + RG   LL  LS
Sbjct: 976 TYRGAEALLQALS 988

Induces NF-kappa-B via RICK (CARDIAK, RIP2) and IKK-gamma. Confers responsiveness to intracellular bacterial lipopolysaccharides (LPS).

Mus musculus (taxid: 10090)

>sp|Q86W24|NAL14_HUMAN NACHT, LRR and PYD domains-containing protein 14 OS=Homo sapiens GN=NLRP14 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 116/280 (41%), Gaps = 29/280 (10%)

Query: 166  CLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKL 225
            CL + NAL   ++   L  S    L       ++ VQ LC+ L      L  L    C L
Sbjct: 775  CLNISNALIRSQSLIFLNLSTNNLL-------DDGVQLLCEALRHPKCYLERLSLESCGL 827

Query: 226  SPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVS--FLSSGRSLCSLK 283
            + +  E +  +L S ++  H             +N      V+L+S     +  +L SL 
Sbjct: 828  TEAGCEYLSLALISNKRLTH---------LCLADNVLGDGGVKLMSDALQHAQCTLKSLV 878

Query: 284  LRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 343
            LR CH        + +SLL  + SL+ LDL  N    WL   D    L          +L
Sbjct: 879  LRRCHFTSLSSEYLSTSLLH-NKSLTHLDLGSN----WLQ--DNGVKLLCDVFRHPSCNL 931

Query: 344  RLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL 403
            + L L G  L  A   DL S +++ PNL  LD+ +N ++DDG++ L       +  CN +
Sbjct: 932  QDLELMGCVLTNACCLDLASVILNNPNLRSLDLGNNDLQDDGVKILCDALRYPN--CN-I 988

Query: 404  VELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 443
              L LE C L+      L   L   +R    +++  N LG
Sbjct: 989  QRLGLEYCGLTSLCCQDLSSALICNKR-LIKMNLTQNTLG 1027

May be involved in inflammation and spermatogenesis.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	450
297744269	580	unnamed protein product [Vitis vinifera]	0.96	0.744	0.550	1e-130
255560275	598	protein binding protein, putative [Ricin	0.971	0.730	0.562	1e-125
359480084	834	PREDICTED: uncharacterized protein LOC10	0.935	0.504	0.538	1e-123
449443929	604	PREDICTED: uncharacterized protein LOC10	0.966	0.720	0.558	1e-121
449475557	604	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.966	0.720	0.558	1e-121
356503658	604	PREDICTED: uncharacterized protein LOC10	0.957	0.713	0.547	1e-120
356570694	625	PREDICTED: uncharacterized protein LOC10	0.966	0.696	0.502	1e-112
42569177	604	leucine-rich repeats-ribonuclease inhibi	0.96	0.715	0.521	1e-104
297832112	603	leucine-rich repeat family protein [Arab	0.971	0.724	0.523	1e-100
357154921	653	PREDICTED: uncharacterized protein LOC10	0.935	0.644	0.433	4e-85

>gi|297744269|emb|CBI37239.3| unnamed protein product [Vitis vinifera]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 251/456 (55%), Positives = 317/456 (69%), Gaps = 24/456 (5%)

Query: 13  GDDVIPYVYELPADLFDILLTCLPPLALQKLQTKM-----DGDDCGSPDYCFENGRKRGR 67
           G+D+   +YELP+ LFD LL  LPPL LQKLQ +M     +G +  S + CF NGRKRG 
Sbjct: 25  GNDLSSAIYELPSVLFDGLLMHLPPLTLQKLQEEMPLRCWNGHE--STNICFRNGRKRGS 82

Query: 68  YGNFNTVWKKLFKTRWSGFTDQIEPVDW-------------QQRYWEAHVQGCLDEAAEL 114
            GNFNT WK LFK+RW     +I+ VDW             QQ YWE H+Q C+DEAAE+
Sbjct: 83  CGNFNTAWKALFKSRWPDLARKIQRVDWSAGVAKYESIIDWQQMYWETHLQNCIDEAAEI 142

Query: 115 VVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALC 174
            VLPSF G + +I I DTI+  I Y+   +H   DYSKLSYHC+QFG YARCL+LQN LC
Sbjct: 143 AVLPSFDGGLGEIEIPDTIIKCIVYKGHRSHSTRDYSKLSYHCEQFGSYARCLKLQNMLC 202

Query: 175 VEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGIC 234
           + ET  LLR+S+LQ LVLRWI+  EH+  LC+LL QN+ETL+SLEF+ C LS + +  IC
Sbjct: 203 IAETSHLLRKSRLQQLVLRWIKSSEHMDGLCQLLQQNNETLSSLEFIFCNLSSASLNAIC 262

Query: 235 RSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFG 294
            SL  K  + +++++ SI  S+ +E  P S+   LVSFLSSGRSLCSLK     L ++F 
Sbjct: 263 DSLRVKDMQTYRVQHFSI-TSTVLERNPLSLPHGLVSFLSSGRSLCSLKFSDNRLGKNFA 321

Query: 295 RMVFSSLLEASSSLSILDLSGNSIGGWLSKYDR---SGPLFSLGAGKSLQSLRLLNLRGN 351
           ++VF++LL+ASS LS L+   N+I GWL  +++   + PL S G GKSLQ LR+LNLRGN
Sbjct: 322 KLVFNTLLDASSRLSTLNFEDNNITGWLFNFNQRSSTWPLPSFGLGKSLQLLRVLNLRGN 381

Query: 352 NLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENC 411
           NLCK DA  L  AL+++PNLEILD+SDN IEDDGI SLIPYFV+ASER +PL +L L +C
Sbjct: 382 NLCKDDADSLKYALIYMPNLEILDLSDNPIEDDGISSLIPYFVEASERHSPLADLSLGDC 441

Query: 412 ELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 447
           +LS  GV+QLLD LSTL+ P  SLSIA N LG   A
Sbjct: 442 DLSCNGVTQLLDVLSTLKNPLHSLSIAHNELGSQAA 477

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560275|ref|XP_002521155.1| protein binding protein, putative [Ricinus communis] gi|223539724|gb|EEF41306.1| protein binding protein, putative [Ricinus communis]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 255/453 (56%), Positives = 316/453 (69%), Gaps = 16/453 (3%)

Query: 10  MVTGDDVI--PYVYELPADLFDILLTCLPPLALQKLQTKM-----DGDDCG-SPDYCFEN 61
           +++GDDV+    +YE+P+ LF IL+T LPPLAL  LQ +M     +G +C    D C + 
Sbjct: 8   LISGDDVLMLAEIYEIPSHLFSILVTKLPPLALHNLQMEMPYENSNGYECSDGGDGCSKI 67

Query: 62  GRKRGRYGNFNTVWKKLFKTRWSGF--TDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPS 119
           GRKRGR   FNT WK LFK RW     TD +E  +W Q YWE H+Q CLDEAA   ++ S
Sbjct: 68  GRKRGRSCKFNTEWKTLFKLRWPQIVDTDSVESDNWHQAYWEKHLQNCLDEAAGSSMV-S 126

Query: 120 FRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETC 179
           F G I +I + D IL +IG E  +NH    YSKLSYH QQ GHYARCLRLQN LCV ETC
Sbjct: 127 FDGCIGEIKVPDYILKWIGCEGHLNHSI--YSKLSYHFQQLGHYARCLRLQNVLCVAETC 184

Query: 180 QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCS 239
           QLLR S+LQ+L LRWIR +EHV  LC+LLIQN ETL SLEF+HCKLS +FV+ ICRSL  
Sbjct: 185 QLLRNSQLQNLALRWIRSQEHVDGLCQLLIQNRETLTSLEFVHCKLSSTFVDAICRSLEI 244

Query: 240 KRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFS 299
           K K+ H I+N SI  S F+E    S+   LVSFLSSGRSLCSL+    HLDR F R++F+
Sbjct: 245 KDKQTHGIKNFSIRTSIFLETDLVSLPPSLVSFLSSGRSLCSLRFSGNHLDRKFARILFT 304

Query: 300 SLLEASSSLSILDLSGNSIGGWLSKYDRSGPLF---SLGAGKSLQSLRLLNLRGNNLCKA 356
            L + SS++S+LDLS N I GWLS ++R        + G  KSLQSLR+LN+R NNL K 
Sbjct: 305 LLFDDSSNISVLDLSDNIIAGWLSNFNRGSSSMVPSTFGITKSLQSLRILNVRNNNLRKC 364

Query: 357 DARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR 416
           D + L   L+ +PNL+ILD+ +N IED+GIR LIPYF +A ERC+PLVEL LE+CELS  
Sbjct: 365 DMKSLRYTLLCMPNLDILDLGENPIEDEGIRCLIPYFTEAVERCSPLVELNLESCELSCE 424

Query: 417 GVSQLLDTLSTLRRPPTSLSIADNNLGRFCANS 449
           GV+ LLDTLSTL++P  SL++ADN LG   A +
Sbjct: 425 GVTLLLDTLSTLQKPLNSLTLADNGLGSPIAGA 457

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480084|ref|XP_002267362.2| PREDICTED: uncharacterized protein LOC100261775 [Vitis vinifera]

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 245/455 (53%), Positives = 309/455 (67%), Gaps = 34/455 (7%)

Query: 14  DDVIPYVYELPADLFDILLTCLPPLALQKLQTKM-----DGDDCGSPDYCFENGRKRGRY 68
           +D+   +YELP+ LFD LL  LPPL LQKLQ +M     +G +  S + CF NGRKRG  
Sbjct: 81  NDLSSAIYELPSVLFDGLLMHLPPLTLQKLQEEMPLRCWNGHE--STNICFRNGRKRGSC 138

Query: 69  GNFNTVWKKLFKTRWSGFTDQIEPVDW-------------QQRYWEAHVQGCLDEAAELV 115
           GNFNT WK LFK+RW     +I+ VDW             QQ YWE H+Q C+DEAAE+ 
Sbjct: 139 GNFNTAWKALFKSRWPDLARKIQRVDWSAGVAKYESIIDWQQMYWETHLQNCIDEAAEIA 198

Query: 116 VLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCV 175
           VLPSF G + +I I              +H   DYSKLSYHC+QFG YARCL+LQN LC+
Sbjct: 199 VLPSFDGGLGEIEIPG----------HRSHSTRDYSKLSYHCEQFGSYARCLKLQNMLCI 248

Query: 176 EETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICR 235
            ET  LLR+S+LQ LVLRWI+  EH+  LC+LL QN+ETL+SLEF+ C LS + +  IC 
Sbjct: 249 AETSHLLRKSRLQQLVLRWIKSSEHMDGLCQLLQQNNETLSSLEFIFCNLSSASLNAICD 308

Query: 236 SLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGR 295
           SL  K  + +++++ SI  S+ +E  P S+   LVSFLSSGRSLCSLK     L ++F +
Sbjct: 309 SLRVKDMQTYRVQHFSI-TSTVLERNPLSLPHGLVSFLSSGRSLCSLKFSDNRLGKNFAK 367

Query: 296 MVFSSLLEASSSLSILDLSGNSIGGWLSKYDR---SGPLFSLGAGKSLQSLRLLNLRGNN 352
           +VF++LL+ASS LS L+   N+I GWL  +++   + PL S G GKSLQ LR+LNLRGNN
Sbjct: 368 LVFNTLLDASSRLSTLNFEDNNITGWLFNFNQRSSTWPLPSFGLGKSLQLLRVLNLRGNN 427

Query: 353 LCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE 412
           LCK DA  L  AL+++PNLEILD+SDN IEDDGI SLIPYFV+ASER +PL +L L +C+
Sbjct: 428 LCKDDADSLKYALIYMPNLEILDLSDNPIEDDGISSLIPYFVEASERHSPLADLSLGDCD 487

Query: 413 LSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 447
           LS  GV+QLLD LSTL+ P  SLSIA N LG   A
Sbjct: 488 LSCNGVTQLLDVLSTLKNPLHSLSIAHNELGSQAA 522

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443929|ref|XP_004139728.1| PREDICTED: uncharacterized protein LOC101206924 [Cucumis sativus]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 247/442 (55%), Positives = 300/442 (67%), Gaps = 7/442 (1%)

Query: 14  DDVIPYVYELPADLFDILLTCLPPLALQKLQTKMDGDDCGSPDY---CFENGRKRGRYGN 70
           DDV P +Y+LP  L D L   LPPLAL+ LQ+ M  +     +Y   C  +GRKR R  N
Sbjct: 23  DDVPPALYDLPPHLLDTLALRLPPLALRNLQSGMPFELQNEDEYDNNCLMDGRKRRRSSN 82

Query: 71  FNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINIS 130
           FN  WKK F  RWS  TD I+PVDWQQ YWE H+Q CLDEAAE+  LPSF   I +I +S
Sbjct: 83  FNLAWKKNFDLRWSKLTDTIQPVDWQQIYWETHLQSCLDEAAEIASLPSFSKCIGEIEMS 142

Query: 131 DTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSL 190
           D+IL YI  ++ ++     Y  LSYHCQ+FG YA CLRLQ+ LCV E   +LR  +LQ+L
Sbjct: 143 DSILKYIASKESVHFWRAKYRYLSYHCQEFGCYALCLRLQSVLCVSEIYHILRSCRLQTL 202

Query: 191 VLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENL 250
           +LRWIRF E V  LCKLL QN ETL SLE +HCKLS + V  IC +L   RK  H I + 
Sbjct: 203 LLRWIRFPEQVNGLCKLLNQNRETLTSLELIHCKLSSTSVNSICDALIHNRK-THGILHF 261

Query: 251 SIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSI 310
           SI+ S F E  P ++   LVSF SSGR L S KL    L ++FG+ VF +LL+ASS LS+
Sbjct: 262 SINGSRFDETEPVALPSGLVSFFSSGRYLYSFKLCDNDLGKNFGKFVFHTLLDASSCLSV 321

Query: 311 LDLSGNSIGGWLSKYDR---SGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVH 367
           LDLS N + GWLS ++R   +G   S   GKSLQSLR+LNLRGN L K DA +L  AL H
Sbjct: 322 LDLSENKMTGWLSNFNRRSLTGLQASSMVGKSLQSLRVLNLRGNGLKKDDADNLRYALFH 381

Query: 368 IPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLST 427
           IPNLE LD+SDN IEDDGIR+LIPYF++ASER  P  +L LENCELS  GV+QLL+ LST
Sbjct: 382 IPNLEFLDMSDNPIEDDGIRNLIPYFIEASERNCPFADLNLENCELSCDGVTQLLNVLST 441

Query: 428 LRRPPTSLSIADNNLGRFCANS 449
           LR+P  SLS+ADN+LG   A +
Sbjct: 442 LRKPLRSLSVADNSLGSSVAGA 463

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449475557|ref|XP_004154489.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101227026 [Cucumis sativus]

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 247/442 (55%), Positives = 300/442 (67%), Gaps = 7/442 (1%)

Query: 14  DDVIPYVYELPADLFDILLTCLPPLALQKLQTKMDGDDCGSPDY---CFENGRKRGRYGN 70
           DDV P +Y+LP  L D L   LPPLAL+ LQ+ M  +     +Y   C  +GRKR R  N
Sbjct: 23  DDVPPALYDLPPHLLDTLALRLPPLALRNLQSGMPFELQNEDEYDNNCLMDGRKRRRSSN 82

Query: 71  FNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINIS 130
           FN  WKK F  RWS  TD I+PVDWQQ YWE H+Q CLDEAAE+  LPSF   I +I +S
Sbjct: 83  FNLAWKKNFDLRWSKLTDTIQPVDWQQIYWETHLQSCLDEAAEIASLPSFSKCIGEIEMS 142

Query: 131 DTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSL 190
           D+IL YI  ++ ++     Y  LSYHCQ+FG YA CLRLQ+ LCV E   +LR  +LQ+L
Sbjct: 143 DSILKYIASKESVHFWRAKYRYLSYHCQEFGCYALCLRLQSVLCVSEIYHILRSCRLQTL 202

Query: 191 VLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENL 250
           +LRWIRF E V  LCKLL QN ETL SLE +HCKLS + V  IC +L   RK  H I + 
Sbjct: 203 LLRWIRFPEQVNGLCKLLNQNRETLTSLELIHCKLSSTSVNSICDALIHNRK-THGILHF 261

Query: 251 SIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSI 310
           SI+ S F E  P ++   LVSF SSGR L S KL    L ++FG+ VF +LL+ASS LS+
Sbjct: 262 SINGSRFDETEPVALPSGLVSFXSSGRYLYSFKLCDNDLGKNFGKFVFHTLLDASSCLSV 321

Query: 311 LDLSGNSIGGWLSKYDR---SGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVH 367
           LDLS N + GWLS ++R   +G   S   GKSLQSLR+LNLRGN L K DA +L  AL H
Sbjct: 322 LDLSENKMTGWLSNFNRRSLTGLQASSMVGKSLQSLRVLNLRGNGLKKDDADNLRYALFH 381

Query: 368 IPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLST 427
           IPNLE LD+SDN IEDDGIR+LIPYF++ASER  P  +L LENCELS  GV+QLL+ LST
Sbjct: 382 IPNLEFLDMSDNPIEDDGIRNLIPYFIEASERNCPFADLNLENCELSCDGVTQLLNVLST 441

Query: 428 LRRPPTSLSIADNNLGRFCANS 449
           LR+P  SLS+ADN+LG   A +
Sbjct: 442 LRKPLRSLSVADNSLGSSVAGA 463

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503658|ref|XP_003520623.1| PREDICTED: uncharacterized protein LOC100794405 [Glycine max]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/433 (54%), Positives = 288/433 (66%), Gaps = 2/433 (0%)

Query: 14  DDVIPYVYELPADLFDILLTCLPPLALQKLQTKMDGDDCGSPDYCFENGRKRGRYGNFNT 73
           DD++P +Y+LP+ L D L+T LPPLAL+     +  D+ G         RKR R  N N+
Sbjct: 26  DDLLPCIYDLPSHLLDTLITRLPPLALRTFHHHLPFDEEGFSHDDSTKKRKRARDWNLNS 85

Query: 74  VWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTI 133
            W++LF+ RW     QI   DW+Q YWE H+Q CLDEA E+ ++PSF G I DI ISD+I
Sbjct: 86  AWQRLFQLRWPDRVKQIHRTDWEQLYWETHLQDCLDEAVEVALIPSFTGYIGDIQISDSI 145

Query: 134 LNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLR 193
           L YIG+    NH  CD+SKLSYHC QFG +  CL LQN LC  ET  LLRE KLQSLVLR
Sbjct: 146 LKYIGFVGNTNHSTCDHSKLSYHCLQFGSHVSCLGLQNVLCTAETSVLLRECKLQSLVLR 205

Query: 194 WIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSID 253
            IR +E +  LCKLL Q+  TL SLEF+HC LS  F+  I  SL  +R + H I++LSI 
Sbjct: 206 CIRSKEQIDGLCKLLAQHCRTLTSLEFVHCALSTDFINAIFGSLVIERVQKHGIQHLSII 265

Query: 254 ISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDL 313
            +SF+E C  S+   LVSFLSSGRSLCSLKL   H    F + +F +LL  SS +S+LDL
Sbjct: 266 ATSFLEPCTVSLPSGLVSFLSSGRSLCSLKLSENHHGWTFAKDLFVTLLNLSSGISVLDL 325

Query: 314 SGNSIGGWLSKYDR--SGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNL 371
           S N I GWL  Y R  SG   S G GKSL+ LR+LNLR NNL K D + L  AL H+PNL
Sbjct: 326 SRNRISGWLFYYRRSLSGSHLSFGNGKSLKLLRVLNLRENNLGKDDVQHLRYALEHVPNL 385

Query: 372 EILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRP 431
           E LDISDN+IED+GIR+LIPYFV ASE C  +  L LENC+LS  GV+ LL  LST + P
Sbjct: 386 EELDISDNSIEDEGIRNLIPYFVGASETCPRITCLKLENCDLSCVGVNLLLHYLSTFKGP 445

Query: 432 PTSLSIADNNLGR 444
             SLSIA+N LGR
Sbjct: 446 LKSLSIAENYLGR 458

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570694|ref|XP_003553520.1| PREDICTED: uncharacterized protein LOC100817679 [Glycine max]

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 231/460 (50%), Positives = 286/460 (62%), Gaps = 25/460 (5%)

Query: 15  DVIPYVYELPADLFDILLTCLPPLALQKLQTK-MDGDDCGSPDYCFENGRKRGRYGNFNT 73
           D +P +Y+LP+ L   L+T LPP AL+      +  D+ G         RKR R  N ++
Sbjct: 25  DDLPSIYDLPSHLLHTLITRLPPFALRTFHRHHLPFDEEGFSRDDSTKKRKRARDWNLSS 84

Query: 74  VWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTI 133
            W++LF  RW     QI+P DW+Q YWE H+Q CLDEAAE+ ++PSF G I DI ISD+I
Sbjct: 85  AWQRLFLLRWPDRVKQIQPTDWEQHYWEIHLQDCLDEAAEVALIPSFSGYIGDIQISDSI 144

Query: 134 LNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLR 193
           L YIG+    +H +CD+SKLSYHC QFG +  CL LQN LC  ET  LLRE KLQSLVLR
Sbjct: 145 LKYIGFVGNTSHSSCDHSKLSYHCLQFGSHVSCLMLQNVLCTAETSVLLRECKLQSLVLR 204

Query: 194 WIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSID 253
            IR +E +  LCKLL Q+   L SLEF+HC LS  F+  I  SL  +R + H I++LSI 
Sbjct: 205 CIRSKEQIDGLCKLLAQHCRMLTSLEFVHCTLSTDFINAIFGSLVIERVQKHGIQHLSII 264

Query: 254 ISSFIENCPSSVVVELVSFLSSG---------------------RSLCSLKLRHCHLDRD 292
            +SF+E C  S+   L+SFLSSG                     RSLCSLKL      R 
Sbjct: 265 ATSFLEPCAVSLPSGLMSFLSSGRYMSIIAFLSVEYLPYATAATRSLCSLKLSDNQHGRT 324

Query: 293 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDR---SGPLFSLGAGKSLQSLRLLNLR 349
           F + +F +LL  SS +S+LDLS N I GWLS ++R   SG   S G GKSL+ LR+LNLR
Sbjct: 325 FAKDLFVTLLNLSSGISVLDLSENRIAGWLSDFNRRFLSGSHMSFGNGKSLKLLRVLNLR 384

Query: 350 GNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLE 409
            NNL K D   L  AL H+PNLE LDIS N+IED+GIR+LIPYFV ASE C  +  L LE
Sbjct: 385 ENNLGKDDVESLRYALQHVPNLEELDISGNSIEDEGIRNLIPYFVGASETCPHITCLKLE 444

Query: 410 NCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCANS 449
           NC+LS  GV+ LL  LS  + P  SLSIADN LG   A +
Sbjct: 445 NCDLSCVGVNNLLHILSNFKGPLKSLSIADNYLGSQVAEA 484

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569177|ref|NP_179611.2| leucine-rich repeats-ribonuclease inhibitor domain-containing protein [Arabidopsis thaliana] gi|330251888|gb|AEC06982.1| leucine-rich repeats-ribonuclease inhibitor domain-containing protein [Arabidopsis thaliana]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 235/451 (52%), Positives = 289/451 (64%), Gaps = 19/451 (4%)

Query: 10  MVTGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKM---------DGDDCGSPDYCFE 60
           ++  D+ IP +YELP++L D ++  LP LALQK QT M          GDDC     C  
Sbjct: 19  LLESDNPIPDLYELPSELLDGIVAHLPALALQKFQTNMPFHCLDSYESGDDC-----CLI 73

Query: 61  NGRKRGRYGNFNTVWKKLFKTRWSGFTDQIE-PVDWQQRYWEAHVQGCLDEAAELVVLPS 119
            GRKR R     + WK LFK RW  F D++E P DWQQ YWE H+Q C+DEAAE+ + P+
Sbjct: 74  TGRKRARNDVLGSSWKLLFKLRWPDFVDRVESPADWQQLYWEKHLQNCVDEAAEVALRPT 133

Query: 120 FRGLISDINISDTILNYIGYEQQ-MNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEET 178
           F G I  IN+SD IL YI +E+  M    C   +LS+H Q FG Y RCLRL N LCV ET
Sbjct: 134 FSGRICSINVSDNILRYICHEEHIMTCQNCVCKELSFHFQTFGPYLRCLRLLNVLCVTET 193

Query: 179 CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLC 238
            +LLR SKL+SLVLRWIR E+HV+ LCKLLIQ+ ETL SLE +HCKLS S +  IC SL 
Sbjct: 194 SELLRTSKLRSLVLRWIRSEKHVEPLCKLLIQSRETLTSLELIHCKLSLSSISAICTSLH 253

Query: 239 SKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVF 298
            K      ++   I  SS IE  P +     VSFL S R+L SL     +LDR F RMVF
Sbjct: 254 EKGIHTTGMQRFCIKTSS-IEIDPLAAPSAFVSFLMSVRTLHSLHFGDSNLDRYFARMVF 312

Query: 299 SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADA 358
           S+LL++SS+LS LDLS N+I GWLS +     + SL +GKSLQSL  LNLRGN L + DA
Sbjct: 313 STLLDSSSNLSSLDLSENNISGWLSTFSCKSVVGSLSSGKSLQSLCKLNLRGNELDRYDA 372

Query: 359 RDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGV 418
            +L  AL+H+P LE LD+S N IED GIRSLI YF +  +  + L +L LENCELS  GV
Sbjct: 373 ENLAHALLHMPGLESLDLSGNPIEDSGIRSLISYFTKNPD--SRLADLNLENCELSCCGV 430

Query: 419 SQLLDTLSTLRRPPTSLSIADNNLGRFCANS 449
            + LDTLS L +P   LS+ADN LG   A +
Sbjct: 431 IEFLDTLSMLEKPLKFLSVADNALGSEVAEA 461

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832112|ref|XP_002883938.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297329778|gb|EFH60197.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 233/445 (52%), Positives = 287/445 (64%), Gaps = 8/445 (1%)

Query: 10  MVTGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMDG---DDCGSPDYCFENGRKRG 66
           ++  D+ IP +YELP++L D ++  LP LALQ  QT M     DD  S D C  NGRKR 
Sbjct: 19  LLDSDNPIPDLYELPSELLDAVIAHLPALALQNFQTNMPFNCLDDYESGDDCLINGRKRS 78

Query: 67  -RYGNFNTVWKKLFKTRWSGFTDQIE-PVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLI 124
            R     + WK LFK RW  F D++E P DWQQ YWE H+Q C+DEAAE+ + P+F G I
Sbjct: 79  SRNDPLGSSWKMLFKLRWPDFVDRVESPADWQQLYWEKHLQNCVDEAAEVALRPTFSGRI 138

Query: 125 SDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRE 184
             IN+SD IL YI +E+ M+   C   +LS+H Q FG Y RCLRL N LCV ET +LL  
Sbjct: 139 RSINVSDNILRYICHEEHMSCQKCVCKELSFHFQTFGPYLRCLRLLNVLCVTETSELLMT 198

Query: 185 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRI 244
           SKLQSLVLRWIR E+HV+ LCKLLIQ  +TL SLEF+HCKLS S +  IC SL  K    
Sbjct: 199 SKLQSLVLRWIRSEKHVEPLCKLLIQTRDTLTSLEFIHCKLSSSSISAICASLHEKGIHT 258

Query: 245 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEA 304
             ++   I  SS IE  P +     VSFL S R+L SL     +LDR   RMVFS+LL++
Sbjct: 259 TGMQRFCIKTSS-IEIDPLAAPSAFVSFLMSVRTLHSLHFCDSNLDRHIARMVFSTLLDS 317

Query: 305 SSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSA 364
           SS+LS LDLS N+I GWLS +     + SL +GK LQSL  LNLRGN L + DA +L  A
Sbjct: 318 SSNLSSLDLSENNISGWLSTFSCRSVVGSLSSGKFLQSLCKLNLRGNELDRYDAENLAHA 377

Query: 365 LVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDT 424
           L+H+P LE LD+S N IED GIRSLI YF +  +  + L +L LENCELS  GV + LDT
Sbjct: 378 LLHMPGLESLDLSGNPIEDSGIRSLISYFTKNLD--SRLADLDLENCELSCCGVIEFLDT 435

Query: 425 LSTLRRPPTSLSIADNNLGRFCANS 449
           LS L +P   LS+ADN LG   A +
Sbjct: 436 LSMLEKPIKFLSVADNALGSEVAEA 460

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357154921|ref|XP_003576947.1| PREDICTED: uncharacterized protein LOC100822893 [Brachypodium distachyon]

 Score =  321 bits (823), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 191/441 (43%), Positives = 259/441 (58%), Gaps = 20/441 (4%)

Query: 23  LPADLFDILLTCLPPLALQKLQTKMDGDDCGSP---------DYCFENGRKRGRYGNFNT 73
           LP +L   L   L P AL+ L        C S          D     G KR R  +FNT
Sbjct: 75  LPWELLHQLAPRLSPFALESLHDAAHARCCSSASTTVRFGGLDGGNRRGIKRSRCEDFNT 134

Query: 74  VWKKLFKTRW-----SGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDIN 128
            W+ LFK RW     +G  + +  VDWQQ+YWE H+Q CLDEAAE  +LPSFRG I ++ 
Sbjct: 135 TWQALFKCRWPLDDCTGQANFVT-VDWQQQYWEKHLQECLDEAAEAALLPSFRGSIDELI 193

Query: 129 ISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQ 188
           IS  I++ +     ++     YS+LSYHC + G+Y R LRLQN LC  E C +L+ S+L+
Sbjct: 194 ISAKIMSSVYLSADISQ---QYSRLSYHCTRLGYYVRRLRLQNVLCTVEICSMLQHSRLE 250

Query: 189 SLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIE 248
           +LV   I  E  V  +C LL  +++TL SLEF+HC+L P  ++ IC SLC +  + H+I+
Sbjct: 251 TLVFIRIISEAEVNGVCLLLSCHAKTLVSLEFIHCQLYPVVMDKICSSLCQQGSQNHEIQ 310

Query: 249 NLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSL 308
            LSI  S   E+ PS++   L++FLS  +SL  L L    +   F +++  +LL++S  L
Sbjct: 311 RLSIKSSRVCESNPSTISAGLLNFLSHAKSLQLLSLNDAKMQPSFAKIIIHTLLKSSCGL 370

Query: 309 SILDLSGNSIGGWLSKYDRSGPLFS--LGAGKSLQSLRLLNLRGNNLCKADARDLGSALV 366
             LD+S N I GWLS  DRS   FS  L +  SL SL +L LRGNNL K D  DL + + 
Sbjct: 371 QTLDISENDIAGWLSTVDRSCTSFSSELESNTSLSSLTVLKLRGNNLQKGDMEDLCNIIA 430

Query: 367 HIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLS 426
            + NL  LDISDN I D+GIR LI +F +A ++ N L  L  ENC+LS  GV++LL+ L+
Sbjct: 431 KMSNLRSLDISDNPITDEGIRFLIHFFERALQKENLLWRLRAENCDLSSIGVTKLLECLT 490

Query: 427 TLRRPPTSLSIADNNLGRFCA 447
           ++ RP   LSIADN LG   A
Sbjct: 491 SVNRPLDMLSIADNYLGSSVA 511

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	450
TAIR|locus:2039027	604	AT2G20210 "AT2G20210" [Arabido	0.955	0.711	0.471	2.4e-92
UNIPROTKB|Q86W25	1043	NLRP13 "NACHT, LRR and PYD dom	0.235	0.101	0.260	0.00013
UNIPROTKB|G3MYV6	1037	Bt.111263 "Uncharacterized pro	0.18	0.078	0.362	0.00016

TAIR|locus:2039027 AT2G20210 "AT2G20210" [Arabidopsis thaliana (taxid:3702)]

 Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
 Identities = 208/441 (47%), Positives = 256/441 (58%)

Query:    10 MVTGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKM-----DGDDCGSPDYCFENGRK 64
             ++  D+ IP +YELP++L D ++  LP LALQK QT M     D  + G  D C   GRK
Sbjct:    19 LLESDNPIPDLYELPSELLDGIVAHLPALALQKFQTNMPFHCLDSYESGD-DCCLITGRK 77

Query:    65 RGRYGNFNTVWKKLFKTRWSGFTDQIE-PVDWQQRYWEAHVQGCLDEAAELVVLPSFRGL 123
             R R     + WK LFK RW  F D++E P DWQQ YWE H+Q C+DEAAE+ + P+F G 
Sbjct:    78 RARNDVLGSSWKLLFKLRWPDFVDRVESPADWQQLYWEKHLQNCVDEAAEVALRPTFSGR 137

Query:   124 ISDINISDTILNYIGYEQQ-MNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLL 182
             I  IN+SD IL YI +E+  M    C   +LS+H Q FG Y RCLRL N LCV ET +LL
Sbjct:   138 ICSINVSDNILRYICHEEHIMTCQNCVCKELSFHFQTFGPYLRCLRLLNVLCVTETSELL 197

Query:   183 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 242
             R SKL+SLVLRWIR E+HV+ LCKLLIQ+ ETL SLE +HCKLS S +  IC SL  K  
Sbjct:   198 RTSKLRSLVLRWIRSEKHVEPLCKLLIQSRETLTSLELIHCKLSLSSISAICTSLHEKGI 257

Query:   243 RIHKIENLSIDISSFIENCPXXXXXXXXXXXXXGRSLCSLKLRHCHLDRDFGRMVFXXXX 302
                 ++   I  SS IE  P              R+L SL     +LDR F RMVF    
Sbjct:   258 HTTGMQRFCIKTSS-IEIDPLAAPSAFVSFLMSVRTLHSLHFGDSNLDRYFARMVFSTLL 316

Query:   303 XXXXXXXXXXXXXXXIGGWLSKYDRSGPLFSLGAGKSLQSXXXXXXXXXXXCKADARDLG 362
                            I GWLS +     + SL +GKSLQS            + DA +L 
Sbjct:   317 DSSSNLSSLDLSENNISGWLSTFSCKSVVGSLSSGKSLQSLCKLNLRGNELDRYDAENLA 376

Query:   363 SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLL 422
              AL+H+P LE LD+S N IED GIRSLI YF +  +  + L +L LENCELS  GV + L
Sbjct:   377 HALLHMPGLESLDLSGNPIEDSGIRSLISYFTKNPD--SRLADLNLENCELSCCGVIEFL 434

Query:   423 DTLSTLRRPPTSLSIADNNLG 443
             DTLS L +P   LS+ADN LG
Sbjct:   435 DTLSMLEKPLKFLSVADNALG 455

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

UNIPROTKB|Q86W25 NLRP13 "NACHT, LRR and PYD domains-containing protein 13" [Homo sapiens (taxid:9606)]

 Score = 89 (36.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 30/115 (26%), Positives = 54/115 (46%)

Query:   139 YEQQMNHLACDYSKLSYHCQQFGHYARCLRLQ-NALCVEETCQLLRESKLQSLVLRWIRF 197
             +E  +N L  +  + S  C +       LRL  ++  +E   ++L  SK  S +  W   
Sbjct:   659 FEVDLNILEDEELQASSFCLKHCKRLNKLRLSVSSHILERDLEILETSKFDSRMHAW--- 715

Query:   198 EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSI 252
                  ++C  L+ N E L  L+  + KL  S V+G+C +L + R ++ K+   S+
Sbjct:   716 ----NSICSTLVTN-ENLHELDLSNSKLHASSVKGLCLALKNPRCKVQKLTCKSV 765

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|G3MYV6 Bt.111263 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 109 (43.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
 Identities = 33/91 (36%), Positives = 50/91 (54%)

Query:   356 ADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 415
             A  R+L  AL H  +L+ILD+ +N I+D+G++ L    V  S  C  L  L LE C L+ 
Sbjct:   932 AGCRELAHALKHNGHLKILDVGNNDIQDEGVKELCS--VLKSPSC-VLQTLGLEKCSLTA 988

Query:   416 ---RGVSQLLDTLSTLRRPPTSLSIADNNLG 443
                R +S +L +  +L     +L++  NNLG
Sbjct:   989 ACCRPLSSVLGSSKSLE----NLNLLGNNLG 1015

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: AT2G20210 leucine-rich repeat family protein; leucine-rich repeat family protein; FUNCTIONS IN- protein binding; LOCATED IN- endomembrane system; EXPRESSED IN- 12 plant structures; EXPRESSED DURING- 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s- Leucine-rich repeat (InterPro-IPR001611), Leucine-rich repeat, ribonuclease inhibitor subtype (InterPro-IPR003590); Has 1691 Blast hits to 1352 proteins in 107 species- Archae - 0; Bacteria - 100; Metazoa - 1035; Fungi - 8; Plants - 127; Viruses - 0; [...] (604 aa) (Arabidopsis thaliana)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	450
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-12
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-10
COG5238	388	COG5238, RNA1, Ran GTPase-activating protein (RanG	4e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	5e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.003

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 13/179 (7%)

Query: 267 VELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD 326
             ++  L    SL  LKL +  L     R++   L +   +L  L L  N + G      
Sbjct: 98  CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG------ 151

Query: 327 RSGPLFSL-GAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDG 385
                 +L  A ++ + L+ LNL  N +  A  R L   L    NLE+LD+++N + D+G
Sbjct: 152 --ASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG 209

Query: 386 IRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 444
             +L      AS +   L  L L +  L+  G + L   L +      +LS++ N++  
Sbjct: 210 ASALAETL--ASLKS--LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD 264

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 60/179 (33%), Positives = 80/179 (44%), Gaps = 13/179 (7%)

Query: 269 LVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRS 328
           L+  L+ G  L  L L    L  D G  V  SLL  SSSL  L L+ N +G      DR 
Sbjct: 73  LLQGLTKGCGLQELDLSDNALGPD-GCGVLESLLR-SSSLQELKLNNNGLG------DRG 124

Query: 329 GPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRS 388
             L + G      +L  L L  N L  A    L  AL    +L+ L++++N I D GIR+
Sbjct: 125 LRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA 184

Query: 389 LIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 447
           L             L  L L N  L+  G S L +TL++L+     L++ DNNL    A
Sbjct: 185 LAEGLKANCN----LEVLDLNNNGLTDEGASALAETLASLKSLEV-LNLGDNNLTDAGA 238

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 25/122 (20%)

Query: 302 LEASSSLSILDLSGNSIGG----WLSKYDRSGPLFSLGAGKSLQSLRLLNL------RGN 351
           LE    L  +DLSGN+IG      L     +           +++LR++N       R  
Sbjct: 26  LEMMDELVEVDLSGNTIGTEAMEELCNVIAN-----------VRNLRVVNFSDAFTGRDK 74

Query: 352 NLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENC 411
           +   ++   L  AL+  P L+ +D+SDN    +    L      ++     LV L L N 
Sbjct: 75  DELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSST----DLVHLKLNNN 130

Query: 412 EL 413
            L
Sbjct: 131 GL 132

Length = 388

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 49/248 (19%), Positives = 87/248 (35%), Gaps = 22/248 (8%)

Query: 165 RCLRLQNALCVEETCQ----LLRESKLQSLVLRWIRFE-EHVQALCKLLIQNSETLASLE 219
           + L L +     + C     LLR S LQ L L         ++ L K L      L  L 
Sbjct: 84  QELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV 143

Query: 220 FLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSL 279
               +L        C +L    +    ++ L++  +   +    ++   L +      +L
Sbjct: 144 LGRNRLE----GASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN----CNL 195

Query: 280 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW-LSKYDRSGPLFSLGAGK 338
             L L +  L  D G    +  L +  SL +L+L  N++     +         +     
Sbjct: 196 EVLDLNNNGL-TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA-------LASALLS 247

Query: 339 SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASE 398
              SL  L+L  N++    A+DL   L    +L  LD+  N   ++G + L    ++   
Sbjct: 248 PNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGN 307

Query: 399 RCNPLVEL 406
               L   
Sbjct: 308 ELESLWVK 315

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 338 KSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN-TIEDD-GIRSLIPYFVQ 395
             L  L++L L GN L +  A+ L SAL   P+L+ L +S N T     G++SL+     
Sbjct: 20  PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL-- 77

Query: 396 ASERCNPLVELYLENCELSGRGVSQLLDTLST 427
              +   L EL L +  L   G   L   L +
Sbjct: 78  --TKGCGLQELDLSDNALGPDGCGVLESLLRS 107

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	450
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.89
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.89
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.86
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.85
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.83
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.82
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.78
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.77
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.74
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.69
KOG4341	483	consensus F-box protein containing LRR [General fu	99.69
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	99.62
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	99.58
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.58
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.56
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.54
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.53
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.51
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.51
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.49
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.48
KOG4308	478	consensus LRR-containing protein [Function unknown	99.48
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.48
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.42
KOG4308	478	consensus LRR-containing protein [Function unknown	99.38
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.37
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.36
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.33
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.32
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.3
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.29
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.23
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.21
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.13
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.06
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.99
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.94
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.94
KOG4341	483	consensus F-box protein containing LRR [General fu	98.92
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.86
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.81
PLN03150	623	hypothetical protein; Provisional	98.68
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.63
PLN03150	623	hypothetical protein; Provisional	98.51
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.48
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.46
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.45
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.44
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.43
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.4
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.39
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.38
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.35
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.34
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.28
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.21
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.11
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.01
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.97
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.87
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.86
PRK15386	426	type III secretion protein GogB; Provisional	97.61
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.58
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.45
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.34
PRK15386	426	type III secretion protein GogB; Provisional	97.28
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.24
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.06
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.87
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.84
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	96.83
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.78
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	96.73
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	96.57
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	96.42
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	96.13
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	95.9
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.66
KOG3735	353	consensus Tropomodulin and leiomodulin [Cytoskelet	95.32
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	94.18
KOG3735	353	consensus Tropomodulin and leiomodulin [Cytoskelet	93.95
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	93.74
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	93.68
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	93.48
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.75
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	90.19
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	88.13
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	87.33
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	85.07
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	84.63

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.89  E-value=1.3e-21  Score=189.24  Aligned_cols=246  Identities=25%  Similarity=0.251  Sum_probs=193.0

Q ss_pred             hhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCC
Q 013056          177 ETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS  256 (450)
Q Consensus       177 ~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~  256 (450)
                      ++..+..+++|+.|++++|.+.......+..+... ++|++|++++|.+++.+...+...+...   .++|+.|++++|.
T Consensus        73 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~---~~~L~~L~L~~n~  148 (319)
T cd00116          73 LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDL---PPALEKLVLGRNR  148 (319)
T ss_pred             HHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhC---CCCceEEEcCCCc
Confidence            44556678899999999998765555555555555 7799999999999988888777766653   2789999999999


Q ss_pred             CCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhC
Q 013056          257 FIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA  336 (450)
Q Consensus       257 i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~  336 (450)
                      ++..+.    ..+...+..+++|++|++++|.+++.+...+...+.. .++|++|++++|.+++.    +...++..+. 
T Consensus       149 l~~~~~----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~----~~~~l~~~~~-  218 (319)
T cd00116         149 LEGASC----EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKA-NCNLEVLDLNNNGLTDE----GASALAETLA-  218 (319)
T ss_pred             CCchHH----HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHh-CCCCCEEeccCCccChH----HHHHHHHHhc-
Confidence            986322    2566677788899999999999998777777766644 48999999999998752    1222333333 


Q ss_pred             CCCCCceeEEEccCCCCChhhHHHHHHHhh-cCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056          337 GKSLQSLRLLNLRGNNLCKADARDLGSALV-HIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  415 (450)
Q Consensus       337 ~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  415 (450)
                        .+++|+.|++++|.+++.++..++..+. ..+.|++|++++|.+++.|...+..    .+..+++|+++++++|.+++
T Consensus       219 --~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~----~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         219 --SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE----VLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             --ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHH----HHhcCCCccEEECCCCCCcH
Confidence              5689999999999999888777776654 3678999999999999988887764    45556899999999999999


Q ss_pred             hHHHHHHHHHhcCCCCCcEEECcCCCC
Q 013056          416 RGVSQLLDTLSTLRRPPTSLSIADNNL  442 (450)
Q Consensus       416 ~g~~~l~~~l~~l~~~L~~L~L~~N~l  442 (450)
                      .|+..+++.+......|++|++.+|++
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         293 EGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            999999999887536699999999875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.89  E-value=2.2e-21  Score=187.58  Aligned_cols=261  Identities=21%  Similarity=0.238  Sum_probs=200.6

Q ss_pred             hhhcccccCcc-----hhhhHhhhcCCCccEEEeecccCh---HHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHH
Q 013056          164 ARCLRLQNALC-----VEETCQLLRESKLQSLVLRWIRFE---EHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICR  235 (450)
Q Consensus       164 l~~l~L~~~~~-----~~~~~~l~~~~~L~~L~Ls~n~~~---~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  235 (450)
                      ++.+.+.++.+     ..+...+...+++++|+++++...   ..+..+ ...+..+++|+.|++++|.+....+..+..
T Consensus        25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  103 (319)
T cd00116          25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSL-LQGLTKGCGLQELDLSDNALGPDGCGVLES  103 (319)
T ss_pred             ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHH-HHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence            33444555544     334455667788999999998855   223333 333456899999999999998766666654


Q ss_pred             HHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCC-CCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEecc
Q 013056          236 SLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSG-RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLS  314 (450)
Q Consensus       236 ~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls  314 (450)
                      ...     .++|++|++++|.+++.+..    .+...+..+ ++|++|++++|.+++.++..+...+ ..+.+|++|+++
T Consensus       104 l~~-----~~~L~~L~ls~~~~~~~~~~----~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~~~~~L~~L~l~  173 (319)
T cd00116         104 LLR-----SSSLQELKLNNNGLGDRGLR----LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL-RANRDLKELNLA  173 (319)
T ss_pred             Hhc-----cCcccEEEeeCCccchHHHH----HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH-HhCCCcCEEECc
Confidence            311     14599999999999863332    556667777 8999999999999987777666654 346899999999


Q ss_pred             CCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHH
Q 013056          315 GNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFV  394 (450)
Q Consensus       315 ~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~  394 (450)
                      +|.+++.    +...++..+.   .+++|+.|++++|.+++.++..++..+..+++|++|++++|.+++.++..++..+ 
T Consensus       174 ~n~l~~~----~~~~l~~~l~---~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~-  245 (319)
T cd00116         174 NNGIGDA----GIRALAEGLK---ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASAL-  245 (319)
T ss_pred             CCCCchH----HHHHHHHHHH---hCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHH-
Confidence            9998852    1122334444   4589999999999999999989999999999999999999999998888887532 


Q ss_pred             hhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 013056          395 QASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC  446 (450)
Q Consensus       395 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~  446 (450)
                        ....+.|++|++++|.+++.|...+++.+..+ .+|+++++++|.+++.+
T Consensus       246 --~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~N~l~~~~  294 (319)
T cd00116         246 --LSPNISLLTLSLSCNDITDDGAKDLAEVLAEK-ESLLELDLRGNKFGEEG  294 (319)
T ss_pred             --hccCCCceEEEccCCCCCcHHHHHHHHHHhcC-CCccEEECCCCCCcHHH
Confidence              22458999999999999999999999999885 56999999999999764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.86  E-value=1.3e-20  Score=172.82  Aligned_cols=262  Identities=19%  Similarity=0.213  Sum_probs=207.1

Q ss_pred             hhcccccCcchhh-----hHhhhcCCCccEEEeecccCh---HHHH----HHHHHHHhcCCCccEEEccCCCCChhHHHH
Q 013056          165 RCLRLQNALCVEE-----TCQLLRESKLQSLVLRWIRFE---EHVQ----ALCKLLIQNSETLASLEFLHCKLSPSFVEG  232 (450)
Q Consensus       165 ~~l~L~~~~~~~~-----~~~l~~~~~L~~L~Ls~n~~~---~~~~----~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~  232 (450)
                      ..++|+++.+...     ...+.+.+.|+..++|+-...   ..++    .+.++ ...+++|+.||||.|-|...+++.
T Consensus        33 ~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~a-L~~~~~L~~ldLSDNA~G~~g~~~  111 (382)
T KOG1909|consen   33 TKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKA-LLGCPKLQKLDLSDNAFGPKGIRG  111 (382)
T ss_pred             EEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHH-HhcCCceeEeeccccccCccchHH
Confidence            4456666666553     234456688999888876522   2222    22223 346679999999999999999999


Q ss_pred             HHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHH-----HHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCC
Q 013056          233 ICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVEL-----VSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSS  307 (450)
Q Consensus       233 l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l-----~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~  307 (450)
                      +...+.+    +..|++|.|.+|.+...+...+..++     .+..++-+.|+++..+.|.+.+.+...++..+.. .+.
T Consensus       112 l~~ll~s----~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~-~~~  186 (382)
T KOG1909|consen  112 LEELLSS----CTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS-HPT  186 (382)
T ss_pred             HHHHHHh----ccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh-ccc
Confidence            8888777    69999999999999887666544433     2334556789999999999998888888887655 489


Q ss_pred             CcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHH
Q 013056          308 LSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIR  387 (450)
Q Consensus       308 L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~  387 (450)
                      |+.+.++.|.|..    .+...+..++.   +|++|++|||+.|-++..|...+++.+..+++|++|++++|.+.+.|+.
T Consensus       187 leevr~~qN~I~~----eG~~al~eal~---~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~  259 (382)
T KOG1909|consen  187 LEEVRLSQNGIRP----EGVTALAEALE---HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAI  259 (382)
T ss_pred             cceEEEecccccC----chhHHHHHHHH---hCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHH
Confidence            9999999999873    34444555666   7799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCC
Q 013056          388 SLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG  443 (450)
Q Consensus       388 ~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~  443 (450)
                      ++..++..   ..++|+.|.+.+|.|+..++..++.++.. .+.|..|+|++|.++
T Consensus       260 a~~~al~~---~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  260 AFVDALKE---SAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHHHHhc---cCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCccccc
Confidence            99986533   35899999999999999999999999988 556999999999994

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.85  E-value=1.1e-20  Score=173.36  Aligned_cols=251  Identities=21%  Similarity=0.203  Sum_probs=163.5

Q ss_pred             HhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcc-----ccCCCCeeEEEcC
Q 013056          179 CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK-----RKRIHKIENLSID  253 (450)
Q Consensus       179 ~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~-----~~~~~~L~~L~L~  253 (450)
                      ..+..+++|++|+||.|-+.......+..++.++..|++|.|.+|.++..+-..+..+|...     .....+|+.+..+
T Consensus        86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~  165 (382)
T KOG1909|consen   86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG  165 (382)
T ss_pred             HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence            34456667777777777755555555556666677777777777777777666665533221     1124567777777


Q ss_pred             CCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHh
Q 013056          254 ISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFS  333 (450)
Q Consensus       254 ~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~  333 (450)
                      +|++.+.+..    .++..+...+.|+.+.++.|.|...++..++.++.. +++|+.|||..|.++    ..+...++.+
T Consensus       166 rNrlen~ga~----~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~-~~~LevLdl~DNtft----~egs~~Laka  236 (382)
T KOG1909|consen  166 RNRLENGGAT----ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEH-CPHLEVLDLRDNTFT----LEGSVALAKA  236 (382)
T ss_pred             ccccccccHH----HHHHHHHhccccceEEEecccccCchhHHHHHHHHh-CCcceeeecccchhh----hHHHHHHHHH
Confidence            7777775555    566666667777777777777777777666666654 577777777777766    3344445666


Q ss_pred             hhCCCCCCceeEEEccCCCCChhhHHHHHHHhh-cCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCC
Q 013056          334 LGAGKSLQSLRLLNLRGNNLCKADARDLGSALV-HIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE  412 (450)
Q Consensus       334 l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~  412 (450)
                      ++.+   ++|+.|+++.|.+...|+.++..++. ..|+|+.|.+++|.|+.+|+..+.-.    ....+.|..|+|++|.
T Consensus       237 L~s~---~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~----~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  237 LSSW---PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAAC----MAEKPDLEKLNLNGNR  309 (382)
T ss_pred             hccc---chheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHH----HhcchhhHHhcCCccc
Confidence            6643   67777777777777777777777665 45777777777777777777666532    3335777777777777


Q ss_pred             C--ChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056          413 L--SGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF  445 (450)
Q Consensus       413 l--~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~  445 (450)
                      +  .+.++..+...+.....-+...+.+.|.+.++
T Consensus       310 l~e~de~i~ei~~~~~~~~~~~~~~~~s~e~l~~e  344 (382)
T KOG1909|consen  310 LGEKDEGIDEIASKFDTAHVLLEDIDDSEEELERE  344 (382)
T ss_pred             ccccchhHHHHHHhcccccccchhhchhHHHHHhh
Confidence            7  66677777666633222255555555555544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.83  E-value=1.4e-20  Score=208.29  Aligned_cols=245  Identities=22%  Similarity=0.212  Sum_probs=128.6

Q ss_pred             hccccccceecccc--------cchhhcccccCcch-hhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEE
Q 013056          148 CDYSKLSYHCQQFG--------HYARCLRLQNALCV-EETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASL  218 (450)
Q Consensus       148 ~~l~~L~l~~~~~~--------~~l~~l~L~~~~~~-~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L  218 (450)
                      .+|+.|+++.+.+.        ..++.+++++|.+. .++..+.++++|++|++++|.+....+..    +.++++|++|
T Consensus       118 ~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L  193 (968)
T PLN00113        118 SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS----LTNLTSLEFL  193 (968)
T ss_pred             CCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh----hhhCcCCCee
Confidence            45555555544221        14566666666654 34455666777777777777643332222    3456677777


Q ss_pred             EccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHH
Q 013056          219 EFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVF  298 (450)
Q Consensus       219 ~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~  298 (450)
                      ++++|.++...+..+..        +.+|++|++++|.+++        .++..++.+++|++|++++|.+++..+..+ 
T Consensus       194 ~L~~n~l~~~~p~~l~~--------l~~L~~L~L~~n~l~~--------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-  256 (968)
T PLN00113        194 TLASNQLVGQIPRELGQ--------MKSLKWIYLGYNNLSG--------EIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-  256 (968)
T ss_pred             eccCCCCcCcCChHHcC--------cCCccEEECcCCccCC--------cCChhHhcCCCCCEEECcCceeccccChhH-
Confidence            77777666554444433        4666666666666655        344455566666666666666655444433 


Q ss_pred             HHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCC
Q 013056          299 SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISD  378 (450)
Q Consensus       299 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~  378 (450)
                          ..+++|++|++++|.+.+..|        ..+.   .+++|+.|++++|.++.    .+|..+..+++|+.|++++
T Consensus       257 ----~~l~~L~~L~L~~n~l~~~~p--------~~l~---~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~l~~  317 (968)
T PLN00113        257 ----GNLKNLQYLFLYQNKLSGPIP--------PSIF---SLQKLISLDLSDNSLSG----EIPELVIQLQNLEILHLFS  317 (968)
T ss_pred             ----hCCCCCCEEECcCCeeeccCc--------hhHh---hccCcCEEECcCCeecc----CCChhHcCCCCCcEEECCC
Confidence                235566666666666554333        3333   33455555555555543    2444455555555555555


Q ss_pred             CCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056          379 NTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF  445 (450)
Q Consensus       379 N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~  445 (450)
                      |.++..     .|   ..+..+++|+.|++++|.++..    ++..+..+ .+|+.|++++|.+++.
T Consensus       318 n~~~~~-----~~---~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~~-~~L~~L~Ls~n~l~~~  371 (968)
T PLN00113        318 NNFTGK-----IP---VALTSLPRLQVLQLWSNKFSGE----IPKNLGKH-NNLTVLDLSTNNLTGE  371 (968)
T ss_pred             CccCCc-----CC---hhHhcCCCCCEEECcCCCCcCc----CChHHhCC-CCCcEEECCCCeeEee
Confidence            555432     22   2233444555555555554432    33333332 2245555555444433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.82  E-value=2e-20  Score=207.02  Aligned_cols=232  Identities=22%  Similarity=0.241  Sum_probs=174.5

Q ss_pred             chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056          163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  242 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~  242 (450)
                      .++.+++++|.+..... ...+++|++|+|++|.+....+..    +.++++|+.|++++|.+....+..+..       
T Consensus       119 ~L~~L~Ls~n~l~~~~p-~~~l~~L~~L~Ls~n~~~~~~p~~----~~~l~~L~~L~L~~n~l~~~~p~~~~~-------  186 (968)
T PLN00113        119 SLRYLNLSNNNFTGSIP-RGSIPNLETLDLSNNMLSGEIPND----IGSFSSLKVLDLGGNVLVGKIPNSLTN-------  186 (968)
T ss_pred             CCCEEECcCCccccccC-ccccCCCCEEECcCCcccccCChH----HhcCCCCCEEECccCcccccCChhhhh-------
Confidence            55667777776643222 134677888888888754333322    467788888888888887666666654       


Q ss_pred             CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056          243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  322 (450)
Q Consensus       243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  322 (450)
                       +.+|++|++++|.++.        .++..++.+++|++|+|++|.+++..+..+     ..+++|++|++++|.+.+..
T Consensus       187 -l~~L~~L~L~~n~l~~--------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~  252 (968)
T PLN00113        187 -LTSLEFLTLASNQLVG--------QIPRELGQMKSLKWIYLGYNNLSGEIPYEI-----GGLTSLNHLDLVYNNLTGPI  252 (968)
T ss_pred             -CcCCCeeeccCCCCcC--------cCChHHcCcCCccEEECcCCccCCcCChhH-----hcCCCCCEEECcCceecccc
Confidence             6888888888888877        566777888889999999888887666665     34788999999999887654


Q ss_pred             cccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCC
Q 013056          323 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP  402 (450)
Q Consensus       323 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~  402 (450)
                      |        ..++   .+++|+.|++++|.++.    .+|..+..+++|++|++++|.++..     .|   ..+..+++
T Consensus       253 p--------~~l~---~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~-----~p---~~~~~l~~  309 (968)
T PLN00113        253 P--------SSLG---NLKNLQYLFLYQNKLSG----PIPPSIFSLQKLISLDLSDNSLSGE-----IP---ELVIQLQN  309 (968)
T ss_pred             C--------hhHh---CCCCCCEEECcCCeeec----cCchhHhhccCcCEEECcCCeeccC-----CC---hhHcCCCC
Confidence            4        5555   56889999999998876    4777888889999999999988754     44   45677789


Q ss_pred             cCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCccccc
Q 013056          403 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCAN  448 (450)
Q Consensus       403 L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~~  448 (450)
                      |++|++++|.++..    ++..+..+.. |+.|++++|.+++.+|.
T Consensus       310 L~~L~l~~n~~~~~----~~~~~~~l~~-L~~L~L~~n~l~~~~p~  350 (968)
T PLN00113        310 LEILHLFSNNFTGK----IPVALTSLPR-LQVLQLWSNKFSGEIPK  350 (968)
T ss_pred             CcEEECCCCccCCc----CChhHhcCCC-CCEEECcCCCCcCcCCh
Confidence            99999999998875    5666777544 99999999999877663

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.78  E-value=6.1e-21  Score=184.96  Aligned_cols=228  Identities=24%  Similarity=0.211  Sum_probs=148.7

Q ss_pred             hcccccCcchhhhHhhh-cCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCC
Q 013056          166 CLRLQNALCVEETCQLL-RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRI  244 (450)
Q Consensus       166 ~l~L~~~~~~~~~~~l~-~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~  244 (450)
                      .++|++|.++.+|...+ ++++|+.|+|..|.+...-...    |+++++|+.|.|..|+|....-..+..        +
T Consensus       201 tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~lt----FqgL~Sl~nlklqrN~I~kL~DG~Fy~--------l  268 (873)
T KOG4194|consen  201 TLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT----FQGLPSLQNLKLQRNDISKLDDGAFYG--------L  268 (873)
T ss_pred             eeecccCcccccCHHHhhhcchhhhhhccccceeeehhhh----hcCchhhhhhhhhhcCcccccCcceee--------e
Confidence            34455555555555444 2555555555555532211111    445555555555555554322222222        6


Q ss_pred             CCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccc
Q 013056          245 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK  324 (450)
Q Consensus       245 ~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~  324 (450)
                      .++++|+|+.|++..        .-...+-++++|+.|+||+|.|...-++.+     +-+++|++|+|+.|+|+..-+ 
T Consensus       269 ~kme~l~L~~N~l~~--------vn~g~lfgLt~L~~L~lS~NaI~rih~d~W-----sftqkL~~LdLs~N~i~~l~~-  334 (873)
T KOG4194|consen  269 EKMEHLNLETNRLQA--------VNEGWLFGLTSLEQLDLSYNAIQRIHIDSW-----SFTQKLKELDLSSNRITRLDE-  334 (873)
T ss_pred             cccceeecccchhhh--------hhcccccccchhhhhccchhhhheeecchh-----hhcccceeEeccccccccCCh-
Confidence            788888888888776        333445578899999999998877666665     236889999999999886433 


Q ss_pred             cCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHH-HhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCc
Q 013056          325 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL  403 (450)
Q Consensus       325 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L  403 (450)
                                +++..+..|++|+|+.|.|+.     +.+ ++..+++|++|||++|.|+-. +.. +.   .++..++.|
T Consensus       335 ----------~sf~~L~~Le~LnLs~Nsi~~-----l~e~af~~lssL~~LdLr~N~ls~~-IED-aa---~~f~gl~~L  394 (873)
T KOG4194|consen  335 ----------GSFRVLSQLEELNLSHNSIDH-----LAEGAFVGLSSLHKLDLRSNELSWC-IED-AA---VAFNGLPSL  394 (873)
T ss_pred             ----------hHHHHHHHhhhhcccccchHH-----HHhhHHHHhhhhhhhcCcCCeEEEE-Eec-ch---hhhccchhh
Confidence                      333356788999999998885     555 566888999999999986321 000 11   346778999


Q ss_pred             CEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056          404 VELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  444 (450)
Q Consensus       404 ~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~  444 (450)
                      +.|.+.+|+|...    -..++..++. |++|||.+|.|-+
T Consensus       395 rkL~l~gNqlk~I----~krAfsgl~~-LE~LdL~~NaiaS  430 (873)
T KOG4194|consen  395 RKLRLTGNQLKSI----PKRAFSGLEA-LEHLDLGDNAIAS  430 (873)
T ss_pred             hheeecCceeeec----chhhhccCcc-cceecCCCCccee
Confidence            9999999998885    3455666554 9999999998854

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.77  E-value=1.4e-20  Score=182.47  Aligned_cols=240  Identities=20%  Similarity=0.154  Sum_probs=142.3

Q ss_pred             chhhcccccCcchhhhHhhh-cCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056          163 YARCLRLQNALCVEETCQLL-RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  241 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l~-~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~  241 (450)
                      .++.++|+.|.+.+++..-+ ...++++|+|++|.+...-.+    .|..+.+|..|.|+.|+|+...+..+..      
T Consensus       150 alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~----~F~~lnsL~tlkLsrNrittLp~r~Fk~------  219 (873)
T KOG4194|consen  150 ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETG----HFDSLNSLLTLKLSRNRITTLPQRSFKR------  219 (873)
T ss_pred             hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccc----cccccchheeeecccCcccccCHHHhhh------
Confidence            45778888888887775544 557888888888885443222    2556668888888888888666666654      


Q ss_pred             cCCCCeeEEEcCCCCCCCCCchhhHH----------------HHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCC
Q 013056          242 KRIHKIENLSIDISSFIENCPSSVVV----------------ELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEAS  305 (450)
Q Consensus       242 ~~~~~L~~L~L~~n~i~~~~~~~~~~----------------~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~  305 (450)
                        +++|+.|+|..|+|......++.+                .--..|..+.++++|+|+.|+++...-.    +|+ .+
T Consensus       220 --L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g----~lf-gL  292 (873)
T KOG4194|consen  220 --LPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG----WLF-GL  292 (873)
T ss_pred             --cchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc----ccc-cc
Confidence              577777777777765421100000                0001223344555555555555431111    111 24


Q ss_pred             CCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhh
Q 013056          306 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDG  385 (450)
Q Consensus       306 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g  385 (450)
                      ++|+.|+||+|.|.....           .....+++|+.|+|+.|+|+.    .-+.++..+..|++|+|++|+|+.  
T Consensus       293 t~L~~L~lS~NaI~rih~-----------d~WsftqkL~~LdLs~N~i~~----l~~~sf~~L~~Le~LnLs~Nsi~~--  355 (873)
T KOG4194|consen  293 TSLEQLDLSYNAIQRIHI-----------DSWSFTQKLKELDLSSNRITR----LDEGSFRVLSQLEELNLSHNSIDH--  355 (873)
T ss_pred             chhhhhccchhhhheeec-----------chhhhcccceeEecccccccc----CChhHHHHHHHhhhhcccccchHH--
Confidence            566666666666554333           223355677777777777765    223455666677777777777655  


Q ss_pred             HHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056          386 IRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  444 (450)
Q Consensus       386 ~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~  444 (450)
                         +..   .+|..+++|++|||++|.|+. .+++-+..+..+.. |+.|++.+|+|..
T Consensus       356 ---l~e---~af~~lssL~~LdLr~N~ls~-~IEDaa~~f~gl~~-LrkL~l~gNqlk~  406 (873)
T KOG4194|consen  356 ---LAE---GAFVGLSSLHKLDLRSNELSW-CIEDAAVAFNGLPS-LRKLRLTGNQLKS  406 (873)
T ss_pred             ---HHh---hHHHHhhhhhhhcCcCCeEEE-EEecchhhhccchh-hhheeecCceeee
Confidence               233   456667888888888887654 23334445555433 8888888888754

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.74  E-value=9.6e-20  Score=177.89  Aligned_cols=228  Identities=22%  Similarity=0.203  Sum_probs=163.0

Q ss_pred             hhcccccCcchh--hhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056          165 RCLRLQNALCVE--ETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  242 (450)
Q Consensus       165 ~~l~L~~~~~~~--~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~  242 (450)
                      +.+.+..|.+..  +|..++++..|..||||+|.+...+..+     ...+++-.|+||+|+|... +..++-.      
T Consensus        81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~L-----E~AKn~iVLNLS~N~IetI-Pn~lfin------  148 (1255)
T KOG0444|consen   81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNL-----EYAKNSIVLNLSYNNIETI-PNSLFIN------  148 (1255)
T ss_pred             HHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhh-----hhhcCcEEEEcccCccccC-CchHHHh------
Confidence            334444444433  6788888888999999998865554443     4556788899999988743 3333322      


Q ss_pred             CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCC-Cc
Q 013056          243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG-GW  321 (450)
Q Consensus       243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~-~~  321 (450)
                       +..|-.|+||+|++..         ++..+..+..|++|+|++|.+.......+     ..+++|++|.+++.+-+ +.
T Consensus       149 -LtDLLfLDLS~NrLe~---------LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL-----PsmtsL~vLhms~TqRTl~N  213 (1255)
T KOG0444|consen  149 -LTDLLFLDLSNNRLEM---------LPPQIRRLSMLQTLKLSNNPLNHFQLRQL-----PSMTSLSVLHMSNTQRTLDN  213 (1255)
T ss_pred             -hHhHhhhccccchhhh---------cCHHHHHHhhhhhhhcCCChhhHHHHhcC-----ccchhhhhhhcccccchhhc
Confidence             4667788889888755         67777788888999999988766554444     33677888888887643 22


Q ss_pred             ccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCC
Q 013056          322 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN  401 (450)
Q Consensus       322 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~  401 (450)
                              +|.++.   .+.+|..+|++.|++..     +|+.+..+++|+.|+||+|.|+.-      .   ...+...
T Consensus       214 --------~Ptsld---~l~NL~dvDlS~N~Lp~-----vPecly~l~~LrrLNLS~N~iteL------~---~~~~~W~  268 (1255)
T KOG0444|consen  214 --------IPTSLD---DLHNLRDVDLSENNLPI-----VPECLYKLRNLRRLNLSGNKITEL------N---MTEGEWE  268 (1255)
T ss_pred             --------CCCchh---hhhhhhhccccccCCCc-----chHHHhhhhhhheeccCcCceeee------e---ccHHHHh
Confidence                    334444   56788888999998885     888888888999999999988762      1   1123336


Q ss_pred             CcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccccCC
Q 013056          402 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCANSG  450 (450)
Q Consensus       402 ~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~~~~  450 (450)
                      +|+.|+||.|+++.     ++++++++.+ |+.|.+.+|+++=+|--||
T Consensus       269 ~lEtLNlSrNQLt~-----LP~avcKL~k-L~kLy~n~NkL~FeGiPSG  311 (1255)
T KOG0444|consen  269 NLETLNLSRNQLTV-----LPDAVCKLTK-LTKLYANNNKLTFEGIPSG  311 (1255)
T ss_pred             hhhhhccccchhcc-----chHHHhhhHH-HHHHHhccCcccccCCccc
Confidence            88888889888888     7888888766 8888888888876665554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.69  E-value=6.3e-19  Score=172.27  Aligned_cols=218  Identities=20%  Similarity=0.178  Sum_probs=134.5

Q ss_pred             hcccccCcchhhhHhhh-cCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCC
Q 013056          166 CLRLQNALCVEETCQLL-RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRI  244 (450)
Q Consensus       166 ~l~L~~~~~~~~~~~l~-~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~  244 (450)
                      .|.|++|.+.++|..++ ++..|-.||||+|+++..++.+     ..+.+|+.|+|++|.+.-.....+..        +
T Consensus       130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~-----RRL~~LqtL~Ls~NPL~hfQLrQLPs--------m  196 (1255)
T KOG0444|consen  130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQI-----RRLSMLQTLKLSNNPLNHFQLRQLPS--------M  196 (1255)
T ss_pred             EEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHH-----HHHhhhhhhhcCCChhhHHHHhcCcc--------c
Confidence            36777888887777776 7777788888888866654442     45567777788877665443333322        3


Q ss_pred             CCeeEEEcC-------------------------CCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHH
Q 013056          245 HKIENLSID-------------------------ISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFS  299 (450)
Q Consensus       245 ~~L~~L~L~-------------------------~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~  299 (450)
                      ++|+.|.++                         .|.+..         +++.+..+++|+.|+||+|+|+.-.. .+..
T Consensus       197 tsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~---------vPecly~l~~LrrLNLS~N~iteL~~-~~~~  266 (1255)
T KOG0444|consen  197 TSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI---------VPECLYKLRNLRRLNLSGNKITELNM-TEGE  266 (1255)
T ss_pred             hhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc---------chHHHhhhhhhheeccCcCceeeeec-cHHH
Confidence            444444444                         444433         44444455555555555555544111 1111


Q ss_pred             HHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCC
Q 013056          300 SLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN  379 (450)
Q Consensus       300 ~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N  379 (450)
                           ..+|++|+||.|+++.         +|.++.   .++.|+.|.+.+|+++-+|   ||..++++.+|+.+..++|
T Consensus       267 -----W~~lEtLNlSrNQLt~---------LP~avc---KL~kL~kLy~n~NkL~FeG---iPSGIGKL~~Levf~aanN  326 (1255)
T KOG0444|consen  267 -----WENLETLNLSRNQLTV---------LPDAVC---KLTKLTKLYANNNKLTFEG---IPSGIGKLIQLEVFHAANN  326 (1255)
T ss_pred             -----Hhhhhhhccccchhcc---------chHHHh---hhHHHHHHHhccCcccccC---CccchhhhhhhHHHHhhcc
Confidence                 2445555555555553         445555   3355666666666666555   5666666666666666666


Q ss_pred             CCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCC
Q 013056          380 TIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN  441 (450)
Q Consensus       380 ~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~  441 (450)
                      .+.-      +|   +.+..|..|+.|.|++|.+-.     +++++.-+.. |+.||+..|+
T Consensus       327 ~LEl------VP---EglcRC~kL~kL~L~~NrLiT-----LPeaIHlL~~-l~vLDlreNp  373 (1255)
T KOG0444|consen  327 KLEL------VP---EGLCRCVKLQKLKLDHNRLIT-----LPEAIHLLPD-LKVLDLRENP  373 (1255)
T ss_pred             cccc------Cc---hhhhhhHHHHHhcccccceee-----chhhhhhcCC-cceeeccCCc
Confidence            6543      55   678888999999999998766     7888777555 9999998885

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.69  E-value=3.4e-17  Score=153.66  Aligned_cols=50  Identities=24%  Similarity=0.347  Sum_probs=39.0

Q ss_pred             CcchhhccCchHHHHHHHhcCChhhhhhhhhcCCCCCCCCCcccccccccccccCCchHHHHHHHhcccCCCCCCCCCcc
Q 013056           15 DVIPYVYELPADLFDILLTCLPPLALQKLQTKMDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVD   94 (450)
Q Consensus        15 ~~~~~~~~lp~~ll~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~r~~~~~~~W~~l~~~~w~~~~~~~~~~~   94 (450)
                      +.-.+...||||++.++||.|+...+                         +|+++..++|..          ...++..
T Consensus        67 ~~~~~~~~LPpEl~lkvFS~LDtksl-------------------------~r~a~~c~~~n~----------~AlD~~~  111 (483)
T KOG4341|consen   67 DNNSISRSLPPELLLKVFSMLDTKSL-------------------------CRAAQCCTMWNK----------LALDGSC  111 (483)
T ss_pred             hcccccccCCHHHHHHHHHHHhHHHH-------------------------HHHHHHHHHhhh----------hhhcccc
Confidence            44567788999999999999986666                         577888889944          4446788


Q ss_pred             hHHHH
Q 013056           95 WQQRY   99 (450)
Q Consensus        95 ~~~~~   99 (450)
                      |++..
T Consensus       112 ~q~id  116 (483)
T KOG4341|consen  112 WQHID  116 (483)
T ss_pred             ceeee
Confidence            88877

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=99.62  E-value=2.2e-14  Score=127.76  Aligned_cols=252  Identities=21%  Similarity=0.195  Sum_probs=190.1

Q ss_pred             hHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCC---CCChhHHHHHHHHHhccccCCCCeeEEEcCC
Q 013056          178 TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHC---KLSPSFVEGICRSLCSKRKRIHKIENLSIDI  254 (450)
Q Consensus       178 ~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n---~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~  254 (450)
                      ...+.....+.+++||+|.+.......+...+.+-++|+..+++.-   ...+..+..+.- |.....+|+.|+..+||.
T Consensus        23 ~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~-Ll~aLlkcp~l~~v~LSD  101 (388)
T COG5238          23 VEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVM-LLKALLKCPRLQKVDLSD  101 (388)
T ss_pred             HHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHH-HHHHHhcCCcceeeeccc
Confidence            3445557889999999999666655555555566789999998865   333444444321 112222389999999999


Q ss_pred             CCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhh--------CCCCCcEEeccCCCCCCcccccC
Q 013056          255 SSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLE--------ASSSLSILDLSGNSIGGWLSKYD  326 (450)
Q Consensus       255 n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~--------~~~~L~~L~Ls~n~l~~~~~~~~  326 (450)
                      |.+..    ..++.+..++++-+.|.+|.|++|.++...-..|..+|++        .-+.|++.+...|++..    ..
T Consensus       102 NAfg~----~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen----gs  173 (388)
T COG5238         102 NAFGS----EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN----GS  173 (388)
T ss_pred             cccCc----ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc----Cc
Confidence            99987    4455888999999999999999998877666666655543        24789999999999873    22


Q ss_pred             cccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHH-HHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCE
Q 013056          327 RSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLG-SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVE  405 (450)
Q Consensus       327 ~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~  405 (450)
                      ....+..+.   +...|+++.+..|.|..+|+..+. ..+..+.+|+.|||..|.++..|-..++    .++...+.|+.
T Consensus       174 ~~~~a~~l~---sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La----~al~~W~~lrE  246 (388)
T COG5238         174 KELSAALLE---SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA----DALCEWNLLRE  246 (388)
T ss_pred             HHHHHHHHH---hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH----HHhcccchhhh
Confidence            222333343   447899999999999999987754 4677889999999999999999999887    45777788999


Q ss_pred             EEccCCCCChhHHHHHHHHHhcC-CCCCcEEECcCCCCCcc
Q 013056          406 LYLENCELSGRGVSQLLDTLSTL-RRPPTSLSIADNNLGRF  445 (450)
Q Consensus       406 L~L~~n~l~~~g~~~l~~~l~~l-~~~L~~L~L~~N~l~~~  445 (450)
                      |.+.+|-++..|+..+...+... ..+|..|-..+|.+.+.
T Consensus       247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~  287 (388)
T COG5238         247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG  287 (388)
T ss_pred             ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence            99999999999999988887653 34578888888876543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=99.58  E-value=5.7e-14  Score=125.15  Aligned_cols=233  Identities=16%  Similarity=0.140  Sum_probs=188.1

Q ss_pred             HHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHH---HHHHhhcCCC
Q 013056          201 VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVV---ELVSFLSSGR  277 (450)
Q Consensus       201 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~---~l~~~l~~~~  277 (450)
                      .+.....+.. +..++.++||+|.|+...+..+++.+...    .+|+..+++.-.. +.....+++   .+...+.+||
T Consensus        19 vk~v~eel~~-~d~~~evdLSGNtigtEA~e~l~~~ia~~----~~L~vvnfsd~ft-gr~kde~~~~L~~Ll~aLlkcp   92 (388)
T COG5238          19 VKGVVEELEM-MDELVEVDLSGNTIGTEAMEELCNVIANV----RNLRVVNFSDAFT-GRDKDELYSNLVMLLKALLKCP   92 (388)
T ss_pred             hhHHHHHHHh-hcceeEEeccCCcccHHHHHHHHHHHhhh----cceeEeehhhhhh-cccHHHHHHHHHHHHHHHhcCC
Confidence            4444444444 68899999999999999999999988874    7788888876432 222223332   3456678899


Q ss_pred             CCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCC------CCCCceeEEEccCC
Q 013056          278 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG------KSLQSLRLLNLRGN  351 (450)
Q Consensus       278 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~------~~l~~L~~L~L~~n  351 (450)
                      .|+..+||+|-++...+..+...+.+ ...|++|.+++|.++    +.++..+..++..+      .+-+.|++.....|
T Consensus        93 ~l~~v~LSDNAfg~~~~e~L~d~is~-~t~l~HL~l~NnGlG----p~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          93 RLQKVDLSDNAFGSEFPEELGDLISS-STDLVHLKLNNNGLG----PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             cceeeeccccccCcccchHHHHHHhc-CCCceeEEeecCCCC----ccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            99999999999998888888777655 599999999999988    56666666444332      35588999999999


Q ss_pred             CCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCC
Q 013056          352 NLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRP  431 (450)
Q Consensus       352 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~  431 (450)
                      ++........+..+..-.+|+++.+..|.|..+|+.+++-   ..+..+.+|+.|||.+|-+|-.|...++.+++..+. 
T Consensus       168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~---~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~-  243 (388)
T COG5238         168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAF---LGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL-  243 (388)
T ss_pred             hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHH---HHHHHhCcceeeeccccchhhhhHHHHHHHhcccch-
Confidence            9988777777777877789999999999999999999975   456778999999999999999999999999999554 


Q ss_pred             CcEEECcCCCCCccccc
Q 013056          432 PTSLSIADNNLGRFCAN  448 (450)
Q Consensus       432 L~~L~L~~N~l~~~~~~  448 (450)
                      |+.|.+.+|-++..|.+
T Consensus       244 lrEL~lnDClls~~G~~  260 (388)
T COG5238         244 LRELRLNDCLLSNEGVK  260 (388)
T ss_pred             hhhccccchhhccccHH
Confidence            99999999988877654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.58  E-value=3.1e-16  Score=146.40  Aligned_cols=94  Identities=22%  Similarity=0.278  Sum_probs=71.5

Q ss_pred             CCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChh--------hHHHHHHH------H-HhhcCCCCCc
Q 013056          339 SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDD--------GIRSLIPY------F-VQASERCNPL  403 (450)
Q Consensus       339 ~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~--------g~~~l~~~------l-~~~l~~~~~L  403 (450)
                      .+++|..|+|++|-+.+     +|..++.+..|++||+|.|++...        +...+..+      + ...+..+.+|
T Consensus       433 ~l~kLt~L~L~NN~Ln~-----LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL  507 (565)
T KOG0472|consen  433 QLQKLTFLDLSNNLLND-----LPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL  507 (565)
T ss_pred             hhhcceeeecccchhhh-----cchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence            45788899999998886     888888888899999999976441        11111100      0 0236777899


Q ss_pred             CEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCC
Q 013056          404 VELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG  443 (450)
Q Consensus       404 ~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~  443 (450)
                      ..|||.+|.|..     ++..+.++ .+|++|++++|+|.
T Consensus       508 ~tLDL~nNdlq~-----IPp~Lgnm-tnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  508 TTLDLQNNDLQQ-----IPPILGNM-TNLRHLELDGNPFR  541 (565)
T ss_pred             ceeccCCCchhh-----CChhhccc-cceeEEEecCCccC
Confidence            999999999887     78899985 55999999999997

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.56  E-value=1.4e-15  Score=159.72  Aligned_cols=105  Identities=21%  Similarity=0.292  Sum_probs=63.3

Q ss_pred             CCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhh
Q 013056          306 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDG  385 (450)
Q Consensus       306 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g  385 (450)
                      ++|+.|++++|.++.         +|..+.     ++|+.|++++|+|+.     +|..+.  ++|++|+|++|.|+.  
T Consensus       325 ~sL~~L~Ls~N~Lt~---------LP~~l~-----~sL~~L~Ls~N~L~~-----LP~~lp--~~L~~LdLs~N~Lt~--  381 (754)
T PRK15370        325 PGLKTLEAGENALTS---------LPASLP-----PELQVLDVSKNQITV-----LPETLP--PTITTLDVSRNALTN--  381 (754)
T ss_pred             ccceeccccCCcccc---------CChhhc-----CcccEEECCCCCCCc-----CChhhc--CCcCEEECCCCcCCC--
Confidence            456666666666654         223332     577788888887774     555442  578888888887775  


Q ss_pred             HHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056          386 IRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  444 (450)
Q Consensus       386 ~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~  444 (450)
                          +|   ..+.  ..|+.|++++|+|+.. ...++..... ..++..|++.+|+|+.
T Consensus       382 ----LP---~~l~--~sL~~LdLs~N~L~~L-P~sl~~~~~~-~~~l~~L~L~~Npls~  429 (754)
T PRK15370        382 ----LP---ENLP--AALQIMQASRNNLVRL-PESLPHFRGE-GPQPTRIIVEYNPFSE  429 (754)
T ss_pred             ----CC---HhHH--HHHHHHhhccCCcccC-chhHHHHhhc-CCCccEEEeeCCCccH
Confidence                33   1222  3577788888887651 1112222222 2347888888888864

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.54  E-value=2.2e-17  Score=153.95  Aligned_cols=216  Identities=21%  Similarity=0.219  Sum_probs=98.4

Q ss_pred             ccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCe
Q 013056          168 RLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKI  247 (450)
Q Consensus       168 ~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L  247 (450)
                      .+..+...+.|+++..+..++.|+.++|++...+..     .....+|..|+.++|.+.. .+..+.+        +..+
T Consensus        74 ~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~-----i~s~~~l~~l~~s~n~~~e-l~~~i~~--------~~~l  139 (565)
T KOG0472|consen   74 NVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQ-----IGSLISLVKLDCSSNELKE-LPDSIGR--------LLDL  139 (565)
T ss_pred             EeccchhhhCCHHHHHHHHHHHhhcccchHhhccHH-----Hhhhhhhhhhhccccceee-cCchHHH--------Hhhh
Confidence            334444455555555555555555555553333222     1233455555555554431 1222222        3445


Q ss_pred             eEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCc
Q 013056          248 ENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDR  327 (450)
Q Consensus       248 ~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~  327 (450)
                      +.++..+|+++.         ++..+.++.+|..+++.+|++....+..+.      ++.|++||...|.++.       
T Consensus       140 ~dl~~~~N~i~s---------lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~------m~~L~~ld~~~N~L~t-------  197 (565)
T KOG0472|consen  140 EDLDATNNQISS---------LPEDMVNLSKLSKLDLEGNKLKALPENHIA------MKRLKHLDCNSNLLET-------  197 (565)
T ss_pred             hhhhcccccccc---------CchHHHHHHHHHHhhccccchhhCCHHHHH------HHHHHhcccchhhhhc-------
Confidence            555555555544         333444445555555555555443333321      3445555555554443       


Q ss_pred             ccHHHhhh-------------------CCCCCCceeEEEccCCCCChhhHHHHHHHh-hcCCCCCEEecCCCCCChhhHH
Q 013056          328 SGPLFSLG-------------------AGKSLQSLRLLNLRGNNLCKADARDLGSAL-VHIPNLEILDISDNTIEDDGIR  387 (450)
Q Consensus       328 ~~l~~~l~-------------------~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l-~~~~~L~~L~Ls~N~l~~~g~~  387 (450)
                        +|..++                   .|.+|+.|++|+++.|.|.-     +|... .+++++..|||..|+++.    
T Consensus       198 --lP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~-----lpae~~~~L~~l~vLDLRdNklke----  266 (565)
T KOG0472|consen  198 --LPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEM-----LPAEHLKHLNSLLVLDLRDNKLKE----  266 (565)
T ss_pred             --CChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHh-----hHHHHhcccccceeeecccccccc----
Confidence              334444                   22234444444444444442     33322 245555555555555544    


Q ss_pred             HHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCC
Q 013056          388 SLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL  442 (450)
Q Consensus       388 ~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l  442 (450)
                        +|   ..+..+++|++||+|+|.|+.     ++-.+.++  +|+.|-+.||++
T Consensus       267 --~P---de~clLrsL~rLDlSNN~is~-----Lp~sLgnl--hL~~L~leGNPl  309 (565)
T KOG0472|consen  267 --VP---DEICLLRSLERLDLSNNDISS-----LPYSLGNL--HLKFLALEGNPL  309 (565)
T ss_pred             --Cc---hHHHHhhhhhhhcccCCcccc-----CCcccccc--eeeehhhcCCch
Confidence              33   333333455555555555554     44444443  355555555544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.53  E-value=1e-15  Score=142.73  Aligned_cols=239  Identities=17%  Similarity=0.131  Sum_probs=160.5

Q ss_pred             chhhcccccCcchhhhHhhh-cCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccC-CCCChhHHHHHHHHHhcc
Q 013056          163 YARCLRLQNALCVEETCQLL-RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLH-CKLSPSFVEGICRSLCSK  240 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l~-~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~~  240 (450)
                      ..-.++|..|.++.+|...+ .+++|+.||||+|.++.+    .+..|.+++.|.+|.+.+ |+|++.....+..     
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I----~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g-----  138 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI----APDAFKGLASLLSLVLYGNNKITDLPKGAFGG-----  138 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhc----ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh-----
Confidence            44457899999999998877 789999999999995444    444477888888888777 7999776666655     


Q ss_pred             ccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCC
Q 013056          241 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  320 (450)
Q Consensus       241 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~  320 (450)
                         +..++.|.+.-|++.-        .....|..+++|..|.+.+|.+..     ++++.+..+..++++.+..|.+..
T Consensus       139 ---L~slqrLllNan~i~C--------ir~~al~dL~~l~lLslyDn~~q~-----i~~~tf~~l~~i~tlhlA~np~ic  202 (498)
T KOG4237|consen  139 ---LSSLQRLLLNANHINC--------IRQDALRDLPSLSLLSLYDNKIQS-----ICKGTFQGLAAIKTLHLAQNPFIC  202 (498)
T ss_pred             ---HHHHHHHhcChhhhcc--------hhHHHHHHhhhcchhcccchhhhh-----hccccccchhccchHhhhcCcccc
Confidence               5678888888888877        677888889999999999987644     444445556788888887776221


Q ss_pred             -----cccc--------cC------------------------c--ccHHHh------------hhCCCCCCceeEEEcc
Q 013056          321 -----WLSK--------YD------------------------R--SGPLFS------------LGAGKSLQSLRLLNLR  349 (450)
Q Consensus       321 -----~~~~--------~~------------------------~--~~l~~~------------l~~~~~l~~L~~L~L~  349 (450)
                           |..+        .+                        +  +.++..            -..++.+++|++|+|+
T Consensus       203 dCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls  282 (498)
T KOG4237|consen  203 DCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS  282 (498)
T ss_pred             ccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccC
Confidence                 0000        00                        0  011100            0112355677777777


Q ss_pred             CCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCC
Q 013056          350 GNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLR  429 (450)
Q Consensus       350 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~  429 (450)
                      +|+|+.    .-..+|.....+++|.|..|+|..      +..  ..|..+..|+.|+|.+|+||..    -+.++..+ 
T Consensus       283 nN~i~~----i~~~aFe~~a~l~eL~L~~N~l~~------v~~--~~f~~ls~L~tL~L~~N~it~~----~~~aF~~~-  345 (498)
T KOG4237|consen  283 NNKITR----IEDGAFEGAAELQELYLTRNKLEF------VSS--GMFQGLSGLKTLSLYDNQITTV----APGAFQTL-  345 (498)
T ss_pred             CCccch----hhhhhhcchhhhhhhhcCcchHHH------HHH--HhhhccccceeeeecCCeeEEE----eccccccc-
Confidence            777775    223456667777777777777654      222  4466667777777777777774    34445553 


Q ss_pred             CCCcEEECcCCCCC
Q 013056          430 RPPTSLSIADNNLG  443 (450)
Q Consensus       430 ~~L~~L~L~~N~l~  443 (450)
                      .+|.+|+|-.|++-
T Consensus       346 ~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  346 FSLSTLNLLSNPFN  359 (498)
T ss_pred             ceeeeeehccCccc
Confidence            33777777777663

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=1.2e-14  Score=131.02  Aligned_cols=200  Identities=24%  Similarity=0.232  Sum_probs=142.1

Q ss_pred             CCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCC-CCCCCCch
Q 013056          185 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDIS-SFIENCPS  263 (450)
Q Consensus       185 ~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n-~i~~~~~~  263 (450)
                      +.|+.||||...++..   ....+..+|..|+.|.|.+++++|..+..+++        +.+|+.|+++.+ .+++.   
T Consensus       185 sRlq~lDLS~s~it~s---tl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk--------N~~L~~lnlsm~sG~t~n---  250 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVS---TLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK--------NSNLVRLNLSMCSGFTEN---  250 (419)
T ss_pred             hhhHHhhcchhheeHH---HHHHHHHHHHhhhhccccccccCcHHHHHHhc--------cccceeeccccccccchh---
Confidence            5689999988775433   23344778889999999999999998888887        689999999876 45552   


Q ss_pred             hhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCC--CCCcccccCcccHHHhhhCCCCCC
Q 013056          264 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS--IGGWLSKYDRSGPLFSLGAGKSLQ  341 (450)
Q Consensus       264 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~l~~~l~~~~~l~  341 (450)
                          ++.-.+.+|+.|..|+|++|.+..+.+..++..+   ..+|..|+|+++.  +..       +++....   ..|+
T Consensus       251 ----~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi---se~l~~LNlsG~rrnl~~-------sh~~tL~---~rcp  313 (419)
T KOG2120|consen  251 ----ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI---SETLTQLNLSGYRRNLQK-------SHLSTLV---RRCP  313 (419)
T ss_pred             ----HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh---chhhhhhhhhhhHhhhhh-------hHHHHHH---HhCC
Confidence                4556677899999999999988777776665543   4678899999985  222       1122222   3679


Q ss_pred             ceeEEEccCC-CCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHH
Q 013056          342 SLRLLNLRGN-NLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ  420 (450)
Q Consensus       342 ~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~  420 (450)
                      +|..|||+.| .+++    .....+.+.+.|++|.++.|-.-+       |.-.-.+...+.|.+|++-+|- ++...+.
T Consensus       314 ~l~~LDLSD~v~l~~----~~~~~~~kf~~L~~lSlsRCY~i~-------p~~~~~l~s~psl~yLdv~g~v-sdt~mel  381 (419)
T KOG2120|consen  314 NLVHLDLSDSVMLKN----DCFQEFFKFNYLQHLSLSRCYDII-------PETLLELNSKPSLVYLDVFGCV-SDTTMEL  381 (419)
T ss_pred             ceeeeccccccccCc----hHHHHHHhcchheeeehhhhcCCC-------hHHeeeeccCcceEEEEecccc-CchHHHH
Confidence            9999999998 5666    355567888999999999885432       2111346777999999998884 3333333


Q ss_pred             HHHHHhc
Q 013056          421 LLDTLST  427 (450)
Q Consensus       421 l~~~l~~  427 (450)
                      +.+.+.+
T Consensus       382 ~~e~~~~  388 (419)
T KOG2120|consen  382 LKEMLSH  388 (419)
T ss_pred             HHHhCcc
Confidence            4444443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.51  E-value=1.2e-14  Score=152.15  Aligned_cols=210  Identities=20%  Similarity=0.147  Sum_probs=123.8

Q ss_pred             chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056          163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  242 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~  242 (450)
                      .++.|++++|.+..++..   .++|+.|++++|.+... +.       ...+|+.|++++|+|+....         .  
T Consensus       243 ~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~L-p~-------lp~~L~~L~Ls~N~Lt~LP~---------~--  300 (788)
T PRK15387        243 ELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHL-PA-------LPSGLCKLWIFGNQLTSLPV---------L--  300 (788)
T ss_pred             CCcEEEecCCccCcccCc---ccccceeeccCCchhhh-hh-------chhhcCEEECcCCccccccc---------c--
Confidence            567777888877766532   36778888888874432 11       11457777777777763210         0  


Q ss_pred             CCCCeeEEEcCCCCCCCCCchhhHHHHHH------h---hcCC-CCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEe
Q 013056          243 RIHKIENLSIDISSFIENCPSSVVVELVS------F---LSSG-RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILD  312 (450)
Q Consensus       243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~------~---l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~  312 (450)
                       .++|+.|++++|.++.....  +..+..      .   +..+ .+|++|+|++|+++. .|. +       ..+|+.|+
T Consensus       301 -p~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~-l-------p~~L~~L~  368 (788)
T PRK15387        301 -PPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-LPT-L-------PSELYKLW  368 (788)
T ss_pred             -ccccceeECCCCccccCCCC--cccccccccccCccccccccccccceEecCCCccCC-CCC-C-------Ccccceeh
Confidence             35677777777777652210  000000      0   0000 234444444444443 111 0       13344444


Q ss_pred             ccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHH
Q 013056          313 LSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPY  392 (450)
Q Consensus       313 Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~  392 (450)
                      +++|.+..         +|.      ...+|+.|++++|.|+.     +|..   .++|+.|++++|+|+.      +|.
T Consensus       369 Ls~N~L~~---------LP~------l~~~L~~LdLs~N~Lt~-----LP~l---~s~L~~LdLS~N~Lss------IP~  419 (788)
T PRK15387        369 AYNNRLTS---------LPA------LPSGLKELIVSGNRLTS-----LPVL---PSELKELMVSGNRLTS------LPM  419 (788)
T ss_pred             hhcccccc---------Ccc------cccccceEEecCCcccC-----CCCc---ccCCCEEEccCCcCCC------CCc
Confidence            44444442         111      12468888888888874     4432   3578889999998876      542


Q ss_pred             HHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056          393 FVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       393 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                         .   ..+|+.|++++|+|+.     ++..+..+. +|+.|+|++|+|++..+
T Consensus       420 ---l---~~~L~~L~Ls~NqLt~-----LP~sl~~L~-~L~~LdLs~N~Ls~~~~  462 (788)
T PRK15387        420 ---L---PSGLLSLSVYRNQLTR-----LPESLIHLS-SETTVNLEGNPLSERTL  462 (788)
T ss_pred             ---c---hhhhhhhhhccCcccc-----cChHHhhcc-CCCeEECCCCCCCchHH
Confidence               1   2468889999999986     788888754 49999999999987754

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.49  E-value=1.9e-15  Score=154.44  Aligned_cols=236  Identities=20%  Similarity=0.188  Sum_probs=139.3

Q ss_pred             chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHH-------
Q 013056          163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICR-------  235 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~-------  235 (450)
                      .++.+..+.|.+. .....+.-.+|+.+++++|.+....     .+...+.+|+.++..+|.+.. .+..+..       
T Consensus       220 ~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~n~l~~lp-----~wi~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l  292 (1081)
T KOG0618|consen  220 SLTALYADHNPLT-TLDVHPVPLNLQYLDISHNNLSNLP-----EWIGACANLEALNANHNRLVA-LPLRISRITSLVSL  292 (1081)
T ss_pred             chheeeeccCcce-eeccccccccceeeecchhhhhcch-----HHHHhcccceEecccchhHHh-hHHHHhhhhhHHHH
Confidence            3444555555554 1111223367888888888754433     336677888888888887743 2222211       


Q ss_pred             --------HHhccccCCCCeeEEEcCCCCCCCCCchhhHH--HHHHhh---------------cCCCCCCEEecCCCCCC
Q 013056          236 --------SLCSKRKRIHKIENLSIDISSFIENCPSSVVV--ELVSFL---------------SSGRSLCSLKLRHCHLD  290 (450)
Q Consensus       236 --------~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~--~l~~~l---------------~~~~~L~~L~Ls~n~l~  290 (450)
                              .+.....+...|++|+|..|.+.......+..  .....+               ..++.|+.|.+.+|.++
T Consensus       293 ~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt  372 (1081)
T KOG0618|consen  293 SAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT  372 (1081)
T ss_pred             HhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc
Confidence                    11111223456777777777765533321110  000000               01234556666667776


Q ss_pred             hhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCC
Q 013056          291 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN  370 (450)
Q Consensus       291 ~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~  370 (450)
                      +.....+     ....+|+.|+|++|++...-.        ..+   .+++.|++|+|++|+++.     ||..+..++.
T Consensus       373 d~c~p~l-----~~~~hLKVLhLsyNrL~~fpa--------s~~---~kle~LeeL~LSGNkL~~-----Lp~tva~~~~  431 (1081)
T KOG0618|consen  373 DSCFPVL-----VNFKHLKVLHLSYNRLNSFPA--------SKL---RKLEELEELNLSGNKLTT-----LPDTVANLGR  431 (1081)
T ss_pred             ccchhhh-----ccccceeeeeecccccccCCH--------HHH---hchHHhHHHhcccchhhh-----hhHHHHhhhh
Confidence            6655544     335677777777777664221        222   355677777777777774     7777777777


Q ss_pred             CCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCC
Q 013056          371 LEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN  441 (450)
Q Consensus       371 L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~  441 (450)
                      |++|..-+|+|..      .|    .+..++.|+.+|++.|+|+...   ++.....  ++|++||++||.
T Consensus       432 L~tL~ahsN~l~~------fP----e~~~l~qL~~lDlS~N~L~~~~---l~~~~p~--p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  432 LHTLRAHSNQLLS------FP----ELAQLPQLKVLDLSCNNLSEVT---LPEALPS--PNLKYLDLSGNT  487 (1081)
T ss_pred             hHHHhhcCCceee------ch----hhhhcCcceEEecccchhhhhh---hhhhCCC--cccceeeccCCc
Confidence            7777777777765      44    3566799999999999998853   3333332  559999999996

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.48  E-value=4.3e-15  Score=151.85  Aligned_cols=211  Identities=18%  Similarity=0.207  Sum_probs=158.6

Q ss_pred             chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHH------------------HHhcCCCccEEEccCCC
Q 013056          163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKL------------------LIQNSETLASLEFLHCK  224 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~------------------l~~~~~~L~~L~Ls~n~  224 (450)
                      ++.+++++.+....+|..+..+.+|+.+...+|.+......+...                  ...+.+.|++|+|..|+
T Consensus       242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~  321 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN  321 (1081)
T ss_pred             cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence            557788899999999988889999999999999864443332111                  01246789999999998


Q ss_pred             CChhHHHHHHHH---Hhcc--------------ccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCC
Q 013056          225 LSPSFVEGICRS---LCSK--------------RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC  287 (450)
Q Consensus       225 l~~~~~~~l~~~---L~~~--------------~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n  287 (450)
                      |.......+...   +...              ....+.|+.|.+.+|.+++        .....+.+.+.|+.|+|++|
T Consensus       322 L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd--------~c~p~l~~~~hLKVLhLsyN  393 (1081)
T KOG0618|consen  322 LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD--------SCFPVLVNFKHLKVLHLSYN  393 (1081)
T ss_pred             ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc--------cchhhhccccceeeeeeccc
Confidence            875443222111   1100              0112357888899999999        77788889999999999999


Q ss_pred             CCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhc
Q 013056          288 HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVH  367 (450)
Q Consensus       288 ~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~  367 (450)
                      .++. .|..-    +.++..|++|+||+|.++.         +|..+.   .+..|++|...+|+|..     +| .+..
T Consensus       394 rL~~-fpas~----~~kle~LeeL~LSGNkL~~---------Lp~tva---~~~~L~tL~ahsN~l~~-----fP-e~~~  450 (1081)
T KOG0618|consen  394 RLNS-FPASK----LRKLEELEELNLSGNKLTT---------LPDTVA---NLGRLHTLRAHSNQLLS-----FP-ELAQ  450 (1081)
T ss_pred             cccc-CCHHH----HhchHHhHHHhcccchhhh---------hhHHHH---hhhhhHHHhhcCCceee-----ch-hhhh
Confidence            9987 34332    2346899999999999997         777777   56899999999999985     78 6889


Q ss_pred             CCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCC
Q 013056          368 IPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE  412 (450)
Q Consensus       368 ~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~  412 (450)
                      ++.|+.+|+|.|.++...+....|       . ++|++|||++|.
T Consensus       451 l~qL~~lDlS~N~L~~~~l~~~~p-------~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  451 LPQLKVLDLSCNNLSEVTLPEALP-------S-PNLKYLDLSGNT  487 (1081)
T ss_pred             cCcceEEecccchhhhhhhhhhCC-------C-cccceeeccCCc
Confidence            999999999999998753333322       2 899999999997

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=99.48  E-value=5.7e-15  Score=147.67  Aligned_cols=241  Identities=25%  Similarity=0.267  Sum_probs=199.9

Q ss_pred             ccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhH
Q 013056          187 LQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVV  266 (450)
Q Consensus       187 L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~  266 (450)
                      +..|.|.+|.+...............++|+.|++++|.+++.+...++..+...   -+.+++|.+..|.++..+..   
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~---~~~l~~L~l~~c~l~~~g~~---  162 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLP---QCLLQTLELVSCSLTSEGAA---  162 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccc---hHHHHHHHhhcccccccchH---
Confidence            677788888765555555555566778999999999999999999999988875   47788999999999997776   


Q ss_pred             HHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhh---CCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCc-
Q 013056          267 VELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLE---ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS-  342 (450)
Q Consensus       267 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~---~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~-  342 (450)
                       .+...+..+..++.++++.|.+...+...++.++..   ..+++++|.+++|.++    ...|..+...+...   +. 
T Consensus       163 -~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t----~~~c~~l~~~l~~~---~~~  234 (478)
T KOG4308|consen  163 -PLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT----SSSCALLDEVLASG---ESL  234 (478)
T ss_pred             -HHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC----hHHHHHHHHHHhcc---chh
Confidence             677777778999999999999888888888888876   6788999999999988    46666777777754   44 


Q ss_pred             eeEEEccCCCCChhhHHHHHHHhhcC-CCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHH
Q 013056          343 LRLLNLRGNNLCKADARDLGSALVHI-PNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL  421 (450)
Q Consensus       343 L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l  421 (450)
                      +..|++..|.+.+.|++.+.+.+..+ +.+++++++.|.|++.|...+.    +.+..++.++.|.++.|.+++.++..+
T Consensus       235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~----~~l~~~~~l~~l~l~~n~l~~~~~~~~  310 (478)
T KOG4308|consen  235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA----EVLVSCRQLEELSLSNNPLTDYGVELL  310 (478)
T ss_pred             hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH----HHHhhhHHHHHhhcccCccccHHHHHH
Confidence            67799999999999999999999988 7899999999999999999887    556777899999999999999999999


Q ss_pred             HHHHhcCCCCCcEEECcCCCCCccc
Q 013056          422 LDTLSTLRRPPTSLSIADNNLGRFC  446 (450)
Q Consensus       422 ~~~l~~l~~~L~~L~L~~N~l~~~~  446 (450)
                      .+.+.. ...+..+-+.++......
T Consensus       311 ~~~l~~-~~~~~~~~l~~~~~~~~~  334 (478)
T KOG4308|consen  311 LEALER-KTPLLHLVLGGTGKGTRG  334 (478)
T ss_pred             HHHhhh-cccchhhhccccCccchh
Confidence            988888 455777777766554443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.48  E-value=4.1e-14  Score=148.85  Aligned_cols=203  Identities=20%  Similarity=0.245  Sum_probs=140.0

Q ss_pred             chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056          163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  242 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~  242 (450)
                      .+..+++++|.+..++..+.  .+|+.|++++|.+......+       .++|+.|+|++|.+... +..+         
T Consensus       200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l-------~~~L~~L~Ls~N~L~~L-P~~l---------  260 (754)
T PRK15370        200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL-------PDTIQEMELSINRITEL-PERL---------  260 (754)
T ss_pred             CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh-------hccccEEECcCCccCcC-ChhH---------
Confidence            55667777777777766554  47888888888765432211       13688888888877732 2222         


Q ss_pred             CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056          243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  322 (450)
Q Consensus       243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  322 (450)
                       ..+|+.|++++|+++.         ++..+  .++|+.|++++|+++. .+..+       ..+|+.|++++|.++.  
T Consensus       261 -~s~L~~L~Ls~N~L~~---------LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l-------p~sL~~L~Ls~N~Lt~--  318 (754)
T PRK15370        261 -PSALQSLDLFHNKISC---------LPENL--PEELRYLSVYDNSIRT-LPAHL-------PSGITHLNVQSNSLTA--  318 (754)
T ss_pred             -hCCCCEEECcCCccCc---------ccccc--CCCCcEEECCCCcccc-Ccccc-------hhhHHHHHhcCCcccc--
Confidence             2468888888888765         22222  1478888888888775 33322       2467888888888774  


Q ss_pred             cccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCC
Q 013056          323 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP  402 (450)
Q Consensus       323 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~  402 (450)
                             +|..+.     ++|+.|++++|.++.     +|..+.  ++|+.|++++|+|+.      +|   ..+.  ++
T Consensus       319 -------LP~~l~-----~sL~~L~Ls~N~Lt~-----LP~~l~--~sL~~L~Ls~N~L~~------LP---~~lp--~~  368 (754)
T PRK15370        319 -------LPETLP-----PGLKTLEAGENALTS-----LPASLP--PELQVLDVSKNQITV------LP---ETLP--PT  368 (754)
T ss_pred             -------CCcccc-----ccceeccccCCcccc-----CChhhc--CcccEEECCCCCCCc------CC---hhhc--CC
Confidence                   223332     679999999999885     666553  689999999999985      44   2232  68


Q ss_pred             cCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056          403 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  444 (450)
Q Consensus       403 L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~  444 (450)
                      |++|+|++|.|+.     ++..+..   .|+.|++++|+|+.
T Consensus       369 L~~LdLs~N~Lt~-----LP~~l~~---sL~~LdLs~N~L~~  402 (754)
T PRK15370        369 ITTLDVSRNALTN-----LPENLPA---ALQIMQASRNNLVR  402 (754)
T ss_pred             cCEEECCCCcCCC-----CCHhHHH---HHHHHhhccCCccc
Confidence            9999999999986     5555543   38999999999974

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.42  E-value=1.8e-13  Score=143.36  Aligned_cols=94  Identities=12%  Similarity=-0.004  Sum_probs=57.6

Q ss_pred             chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056          163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  242 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~  242 (450)
                      .+..+.+.+|.+..++.   ..++|++|++++|.+.....        ..++|+.|++++|.|+... . +         
T Consensus       223 ~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~--------lp~sL~~L~Ls~N~L~~Lp-~-l---------  280 (788)
T PRK15387        223 HITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--------LPPGLLELSIFSNPLTHLP-A-L---------  280 (788)
T ss_pred             CCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcccC--------cccccceeeccCCchhhhh-h-c---------
Confidence            44556666666665543   23677777777777554321        1246777777777766311 1 1         


Q ss_pred             CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCCh
Q 013056          243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR  291 (450)
Q Consensus       243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  291 (450)
                       ..+|+.|++++|+++..         +.   ..++|++|+|++|+++.
T Consensus       281 -p~~L~~L~Ls~N~Lt~L---------P~---~p~~L~~LdLS~N~L~~  316 (788)
T PRK15387        281 -PSGLCKLWIFGNQLTSL---------PV---LPPGLQELSVSDNQLAS  316 (788)
T ss_pred             -hhhcCEEECcCCccccc---------cc---cccccceeECCCCcccc
Confidence             24577788888877652         21   13678888888887765

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=99.38  E-value=5.3e-14  Score=140.75  Aligned_cols=215  Identities=22%  Similarity=0.259  Sum_probs=187.4

Q ss_pred             ccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCC-CCCCEEecCCCCCChhH
Q 013056          215 LASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSG-RSLCSLKLRHCHLDRDF  293 (450)
Q Consensus       215 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~  293 (450)
                      +..|.|.+|.+.+.+...++.++..    +..|+.|+++.|.+.+.+..    .+...+... +.|++|++..|.++..+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t----~~~L~~L~l~~n~l~~~g~~----~l~~~l~~~~~~l~~L~l~~c~l~~~g  160 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKT----LPTLGQLDLSGNNLGDEGAR----LLCEGLRLPQCLLQTLELVSCSLTSEG  160 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcc----cccHhHhhcccCCCccHhHH----HHHhhcccchHHHHHHHhhcccccccc
Confidence            7889999999999999999999888    48999999999999975554    667777776 78999999999999999


Q ss_pred             HHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhC-CCCCCceeEEEccCCCCChhhHHHHHHHhhcCCC-C
Q 013056          294 GRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA-GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN-L  371 (450)
Q Consensus       294 ~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-L  371 (450)
                      ...+.+.+.. ...++.++++.|.+.    ..+...++..+.. +....++++|++.+|.++..++..+...+...++ +
T Consensus       161 ~~~l~~~L~~-~~~l~~l~l~~n~l~----~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~  235 (478)
T KOG4308|consen  161 AAPLAAVLEK-NEHLTELDLSLNGLI----ELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLL  235 (478)
T ss_pred             hHHHHHHHhc-ccchhHHHHHhcccc----hhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhh
Confidence            9999999888 699999999999987    3444556666664 3346889999999999999999999999998888 8


Q ss_pred             CEEecCCCCCChhhHHHHHHHHHhhcCCC-CCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056          372 EILDISDNTIEDDGIRSLIPYFVQASERC-NPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       372 ~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~-~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                      +.|+++.|.+.|.|+..+.|.    +... +.+++++++.|.|++.|+..+++.+.... .++++.++.|++++.+.
T Consensus       236 ~el~l~~n~l~d~g~~~L~~~----l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~-~l~~l~l~~n~l~~~~~  307 (478)
T KOG4308|consen  236 RELDLASNKLGDVGVEKLLPC----LSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCR-QLEELSLSNNPLTDYGV  307 (478)
T ss_pred             HHHHHHhcCcchHHHHHHHHH----hcccchhhhhhhhhcCCccccchHHHHHHHhhhH-HHHHhhcccCccccHHH
Confidence            889999999999999999875    3444 78999999999999999999999999955 69999999999988653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=1.6e-13  Score=129.90  Aligned_cols=191  Identities=19%  Similarity=0.141  Sum_probs=94.3

Q ss_pred             hcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCC
Q 013056          182 LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENC  261 (450)
Q Consensus       182 ~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~  261 (450)
                      ..++++++||||+|-+... . ....++..+|+|+.|+|+.|++....-......       ..+|+.|.++.|.++.  
T Consensus       143 k~~~~v~~LdLS~NL~~nw-~-~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~-------l~~lK~L~l~~CGls~--  211 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNW-F-PVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL-------LSHLKQLVLNSCGLSW--  211 (505)
T ss_pred             hhCCcceeecchhhhHHhH-H-HHHHHHHhcccchhcccccccccCCccccchhh-------hhhhheEEeccCCCCH--
Confidence            3566777777777653332 1 123345566777777777775542211111111       3556666666666654  


Q ss_pred             chhhHHHHHHhhcCCCCCCEEecCCCC-CCh-hHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCC
Q 013056          262 PSSVVVELVSFLSSGRSLCSLKLRHCH-LDR-DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKS  339 (450)
Q Consensus       262 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~-~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~  339 (450)
                           ..+...+..+|+|+.|+|.+|. +.. .....+       ++.|++|||++|++.+.-          .+.....
T Consensus       212 -----k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i-------~~~L~~LdLs~N~li~~~----------~~~~~~~  269 (505)
T KOG3207|consen  212 -----KDVQWILLTFPSLEVLYLEANEIILIKATSTKI-------LQTLQELDLSNNNLIDFD----------QGYKVGT  269 (505)
T ss_pred             -----HHHHHHHHhCCcHHHhhhhcccccceecchhhh-------hhHHhhccccCCcccccc----------ccccccc
Confidence                 1344444556666666666663 111 111111       355666666666654311          0111124


Q ss_pred             CCceeEEEccCCCCChhhHHHHHHH-----hhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCC
Q 013056          340 LQSLRLLNLRGNNLCKADARDLGSA-----LVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELS  414 (450)
Q Consensus       340 l~~L~~L~L~~n~l~~~~~~~l~~~-----l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~  414 (450)
                      ++.|+.|+++.|.|.+-.   +|.+     ....++|+.|+++.|+|.+      .+++ ..+..+++|+.|....|.++
T Consensus       270 l~~L~~Lnls~tgi~si~---~~d~~s~~kt~~f~kL~~L~i~~N~I~~------w~sl-~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  270 LPGLNQLNLSSTGIASIA---EPDVESLDKTHTFPKLEYLNISENNIRD------WRSL-NHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccchhhhhccccCcchhc---CCCccchhhhcccccceeeecccCcccc------cccc-chhhccchhhhhhccccccc
Confidence            456666666666655421   1211     2344566666666666655      3332 33444455555555555544


Q ss_pred             h
Q 013056          415 G  415 (450)
Q Consensus       415 ~  415 (450)
                      .
T Consensus       340 ~  340 (505)
T KOG3207|consen  340 K  340 (505)
T ss_pred             c
Confidence            3

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.36  E-value=2.6e-15  Score=124.94  Aligned_cols=157  Identities=24%  Similarity=0.284  Sum_probs=103.3

Q ss_pred             cCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCC
Q 013056          211 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD  290 (450)
Q Consensus       211 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  290 (450)
                      ++.+++.|.||+|+++ ..+..+++        +.+|+.|++.+|++.+         ++..++++++|+.|+++-|++.
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~--------l~nlevln~~nnqie~---------lp~~issl~klr~lnvgmnrl~   92 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAE--------LKNLEVLNLSNNQIEE---------LPTSISSLPKLRILNVGMNRLN   92 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHH--------hhhhhhhhcccchhhh---------cChhhhhchhhhheecchhhhh
Confidence            4567777888888877 45555555        5677777777777765         6666677777777777777654


Q ss_pred             hhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCC
Q 013056          291 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN  370 (450)
Q Consensus       291 ~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~  370 (450)
                      . .|..+     +.++.|+.|||+.|++...       .+|..+.   .+..|+.|.|+.|.+.     .+|..++++++
T Consensus        93 ~-lprgf-----gs~p~levldltynnl~e~-------~lpgnff---~m~tlralyl~dndfe-----~lp~dvg~lt~  151 (264)
T KOG0617|consen   93 I-LPRGF-----GSFPALEVLDLTYNNLNEN-------SLPGNFF---YMTTLRALYLGDNDFE-----ILPPDVGKLTN  151 (264)
T ss_pred             c-Ccccc-----CCCchhhhhhccccccccc-------cCCcchh---HHHHHHHHHhcCCCcc-----cCChhhhhhcc
Confidence            3 33333     3357777777777776631       1223322   4566777777777665     37777777777


Q ss_pred             CCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056          371 LEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  415 (450)
Q Consensus       371 L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  415 (450)
                      |+.|.+..|.+-.      +|   ..++.+..|++|++.+|.++.
T Consensus       152 lqil~lrdndll~------lp---keig~lt~lrelhiqgnrl~v  187 (264)
T KOG0617|consen  152 LQILSLRDNDLLS------LP---KEIGDLTRLRELHIQGNRLTV  187 (264)
T ss_pred             eeEEeeccCchhh------Cc---HHHHHHHHHHHHhcccceeee
Confidence            7777777776654      44   556666777777777777665

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.33  E-value=2.6e-13  Score=126.83  Aligned_cols=214  Identities=21%  Similarity=0.192  Sum_probs=155.4

Q ss_pred             CCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcC-CCCCCCCCch
Q 013056          185 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSID-ISSFIENCPS  263 (450)
Q Consensus       185 ~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~-~n~i~~~~~~  263 (450)
                      +.-.+++|..|.+....+..    |+.+++|++|||++|.|+...+.++..        +.++.+|-+- +|+|++    
T Consensus        67 ~~tveirLdqN~I~~iP~~a----F~~l~~LRrLdLS~N~Is~I~p~AF~G--------L~~l~~Lvlyg~NkI~~----  130 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGA----FKTLHRLRRLDLSKNNISFIAPDAFKG--------LASLLSLVLYGNNKITD----  130 (498)
T ss_pred             CcceEEEeccCCcccCChhh----ccchhhhceecccccchhhcChHhhhh--------hHhhhHHHhhcCCchhh----
Confidence            45678899999966655544    789999999999999999888888866        4556666554 589988    


Q ss_pred             hhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCce
Q 013056          264 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL  343 (450)
Q Consensus       264 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L  343 (450)
                          .-...|+++.+|+.|.+.-|++.-.....+     ..++++..|.+-.|.+...-         .  +.+..+..+
T Consensus       131 ----l~k~~F~gL~slqrLllNan~i~Cir~~al-----~dL~~l~lLslyDn~~q~i~---------~--~tf~~l~~i  190 (498)
T KOG4237|consen  131 ----LPKGAFGGLSSLQRLLLNANHINCIRQDAL-----RDLPSLSLLSLYDNKIQSIC---------K--GTFQGLAAI  190 (498)
T ss_pred             ----hhhhHhhhHHHHHHHhcChhhhcchhHHHH-----HHhhhcchhcccchhhhhhc---------c--ccccchhcc
Confidence                566778889999999999999877444444     33689999999999876421         1  233355666


Q ss_pred             eEEEccCCCC------------------ChhhH-------------------------HHHH---------------HHh
Q 013056          344 RLLNLRGNNL------------------CKADA-------------------------RDLG---------------SAL  365 (450)
Q Consensus       344 ~~L~L~~n~l------------------~~~~~-------------------------~~l~---------------~~l  365 (450)
                      +++.+..|.+                  ...|+                         +.++               ..+
T Consensus       191 ~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf  270 (498)
T KOG4237|consen  191 KTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCF  270 (498)
T ss_pred             chHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHH
Confidence            6666666541                  11111                         0111               257


Q ss_pred             hcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056          366 VHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF  445 (450)
Q Consensus       366 ~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~  445 (450)
                      ..+++|+.|+|++|+|+..     .+   .+|.....+++|.|..|+|...    -...+..+.. |+.|+|.+|+|+--
T Consensus       271 ~~L~~L~~lnlsnN~i~~i-----~~---~aFe~~a~l~eL~L~~N~l~~v----~~~~f~~ls~-L~tL~L~~N~it~~  337 (498)
T KOG4237|consen  271 KKLPNLRKLNLSNNKITRI-----ED---GAFEGAAELQELYLTRNKLEFV----SSGMFQGLSG-LKTLSLYDNQITTV  337 (498)
T ss_pred             hhcccceEeccCCCccchh-----hh---hhhcchhhhhhhhcCcchHHHH----HHHhhhcccc-ceeeeecCCeeEEE
Confidence            7889999999999999882     33   6788889999999999998774    2344555433 99999999999864


Q ss_pred             cc
Q 013056          446 CA  447 (450)
Q Consensus       446 ~~  447 (450)
                      .|
T Consensus       338 ~~  339 (498)
T KOG4237|consen  338 AP  339 (498)
T ss_pred             ec
Confidence            43

>PLN03210 Resistant to P

Probab=99.32  E-value=2.6e-12  Score=143.71  Aligned_cols=102  Identities=18%  Similarity=0.187  Sum_probs=57.9

Q ss_pred             chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056          163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  242 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~  242 (450)
                      .++.+++.++....+|..+ ...+|++|+++++.+...+..     ...+++|+.|+|++|......+ .+..       
T Consensus       590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~-----~~~l~~Lk~L~Ls~~~~l~~ip-~ls~-------  655 (1153)
T PLN03210        590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDG-----VHSLTGLRNIDLRGSKNLKEIP-DLSM-------  655 (1153)
T ss_pred             ccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccc-----cccCCCCCEEECCCCCCcCcCC-cccc-------
Confidence            4566777777666666544 456777777777764433222     2456677777777653211111 1111       


Q ss_pred             CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCC
Q 013056          243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC  287 (450)
Q Consensus       243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n  287 (450)
                       +++|+.|++++|....        .++..+..+++|+.|++++|
T Consensus       656 -l~~Le~L~L~~c~~L~--------~lp~si~~L~~L~~L~L~~c  691 (1153)
T PLN03210        656 -ATNLETLKLSDCSSLV--------ELPSSIQYLNKLEDLDMSRC  691 (1153)
T ss_pred             -CCcccEEEecCCCCcc--------ccchhhhccCCCCEEeCCCC
Confidence             4666777776665433        34555556666666666665

syringae 6; Provisional

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=1.3e-12  Score=123.80  Aligned_cols=232  Identities=21%  Similarity=0.170  Sum_probs=158.4

Q ss_pred             cchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCCh-hHHHHHHHHHhccccCCCCeeEEE
Q 013056          173 LCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSP-SFVEGICRSLCSKRKRIHKIENLS  251 (450)
Q Consensus       173 ~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~L~~~~~~~~~L~~L~  251 (450)
                      .+..+...=.+..+|++..|.+.........   .....+++++.|||++|-+.. ..+..+++.       +++|+.|+
T Consensus       109 GfDki~akQsn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eq-------Lp~Le~LN  178 (505)
T KOG3207|consen  109 GFDKIAAKQSNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQ-------LPSLENLN  178 (505)
T ss_pred             cHHHHHHHhhhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHhHHHHHHHHHh-------cccchhcc
Confidence            3334444445668889999988774333221   346789999999999997764 333445554       68999999


Q ss_pred             cCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHH
Q 013056          252 IDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPL  331 (450)
Q Consensus       252 L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~  331 (450)
                      ++.|++..-......       ..++.|+.|.|+.|.++...+..+...    +++|+.|+|..|.....-.      .+
T Consensus       179 ls~Nrl~~~~~s~~~-------~~l~~lK~L~l~~CGls~k~V~~~~~~----fPsl~~L~L~~N~~~~~~~------~~  241 (505)
T KOG3207|consen  179 LSSNRLSNFISSNTT-------LLLSHLKQLVLNSCGLSWKDVQWILLT----FPSLEVLYLEANEIILIKA------TS  241 (505)
T ss_pred             cccccccCCccccch-------hhhhhhheEEeccCCCCHHHHHHHHHh----CCcHHHhhhhcccccceec------ch
Confidence            999988653322111       146889999999999998888777554    7999999999995221111      11


Q ss_pred             HhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCC
Q 013056          332 FSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENC  411 (450)
Q Consensus       332 ~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n  411 (450)
                      ..     -++.|+.|||++|++-+..   .....+.++.|+.|+++.+.|++-..... .++ ......++|++|+++.|
T Consensus       242 ~~-----i~~~L~~LdLs~N~li~~~---~~~~~~~l~~L~~Lnls~tgi~si~~~d~-~s~-~kt~~f~kL~~L~i~~N  311 (505)
T KOG3207|consen  242 TK-----ILQTLQELDLSNNNLIDFD---QGYKVGTLPGLNQLNLSSTGIASIAEPDV-ESL-DKTHTFPKLEYLNISEN  311 (505)
T ss_pred             hh-----hhhHHhhccccCCcccccc---cccccccccchhhhhccccCcchhcCCCc-cch-hhhcccccceeeecccC
Confidence            22     3478999999999887632   23557889999999999999876211000 000 11355689999999999


Q ss_pred             CCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056          412 ELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF  445 (450)
Q Consensus       412 ~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~  445 (450)
                      +|.+.-   -...+..+ .+|+.|.+.+|.|+.+
T Consensus       312 ~I~~w~---sl~~l~~l-~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  312 NIRDWR---SLNHLRTL-ENLKHLRITLNYLNKE  341 (505)
T ss_pred             cccccc---ccchhhcc-chhhhhhccccccccc
Confidence            996631   23344442 3488888888888654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.29  E-value=7.2e-15  Score=122.33  Aligned_cols=184  Identities=19%  Similarity=0.201  Sum_probs=135.8

Q ss_pred             HhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCC
Q 013056          179 CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFI  258 (450)
Q Consensus       179 ~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~  258 (450)
                      ..+++..+++.|.||+|++....+.+     ..+.+|+.|++.+|+|++. +..+..        +++|+.|+++-|++.
T Consensus        27 ~gLf~~s~ITrLtLSHNKl~~vppni-----a~l~nlevln~~nnqie~l-p~~iss--------l~klr~lnvgmnrl~   92 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNKLTVVPPNI-----AELKNLEVLNLSNNQIEEL-PTSISS--------LPKLRILNVGMNRLN   92 (264)
T ss_pred             ccccchhhhhhhhcccCceeecCCcH-----HHhhhhhhhhcccchhhhc-Chhhhh--------chhhhheecchhhhh
Confidence            45566788888999999976655543     4667899999999988843 333333        688999999988875


Q ss_pred             CCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHH-HHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCC
Q 013056          259 ENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGR-MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG  337 (450)
Q Consensus       259 ~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~-~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~  337 (450)
                      .         ++..|+.+|.|+.|||++|++...... .++-     +..|+.|+|+.|.+.-         +|..++  
T Consensus        93 ~---------lprgfgs~p~levldltynnl~e~~lpgnff~-----m~tlralyl~dndfe~---------lp~dvg--  147 (264)
T KOG0617|consen   93 I---------LPRGFGSFPALEVLDLTYNNLNENSLPGNFFY-----MTTLRALYLGDNDFEI---------LPPDVG--  147 (264)
T ss_pred             c---------CccccCCCchhhhhhccccccccccCCcchhH-----HHHHHHHHhcCCCccc---------CChhhh--
Confidence            5         778889999999999999988764322 2211     4678889999998764         667778  


Q ss_pred             CCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCC
Q 013056          338 KSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCEL  413 (450)
Q Consensus       338 ~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l  413 (450)
                       .+++|+.|.++.|.+-.     +|..++.+.+|++|.+.+|+++-      +|.-...+....+=+...+.+|..
T Consensus       148 -~lt~lqil~lrdndll~-----lpkeig~lt~lrelhiqgnrl~v------lppel~~l~l~~~k~v~r~E~NPw  211 (264)
T KOG0617|consen  148 -KLTNLQILSLRDNDLLS-----LPKEIGDLTRLRELHIQGNRLTV------LPPELANLDLVGNKQVMRMEENPW  211 (264)
T ss_pred             -hhcceeEEeeccCchhh-----CcHHHHHHHHHHHHhcccceeee------cChhhhhhhhhhhHHHHhhhhCCC
Confidence             56899999999998875     99999999999999999999976      442112222223344556667763

>PLN03210 Resistant to P

Probab=99.23  E-value=2.7e-11  Score=135.67  Aligned_cols=81  Identities=15%  Similarity=0.161  Sum_probs=45.0

Q ss_pred             chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056          163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  242 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~  242 (450)
                      .+..+++.++.+..++..+..+++|+.|+|+++.....++.     +..+++|+.|+|++|......+..+..       
T Consensus       612 ~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~-------  679 (1153)
T PLN03210        612 NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQY-------  679 (1153)
T ss_pred             CCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhc-------
Confidence            45566677766666655556667777777776542222222     234566777777766433333333322       


Q ss_pred             CCCCeeEEEcCCCC
Q 013056          243 RIHKIENLSIDISS  256 (450)
Q Consensus       243 ~~~~L~~L~L~~n~  256 (450)
                       +.+|+.|++++|.
T Consensus       680 -L~~L~~L~L~~c~  692 (1153)
T PLN03210        680 -LNKLEDLDMSRCE  692 (1153)
T ss_pred             -cCCCCEEeCCCCC
Confidence             4556666666553

syringae 6; Provisional

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=1.4e-11  Score=111.41  Aligned_cols=160  Identities=27%  Similarity=0.362  Sum_probs=81.8

Q ss_pred             CccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCC-CCChh
Q 013056          214 TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-HLDRD  292 (450)
Q Consensus       214 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~  292 (450)
                      .|+.|||+...|+...+..+.+.       |.+|+.|++.++++.+        .+...++.+.+|..|+|+.+ .++..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~-------C~kLk~lSlEg~~LdD--------~I~~~iAkN~~L~~lnlsm~sG~t~n  250 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQ-------CSKLKNLSLEGLRLDD--------PIVNTIAKNSNLVRLNLSMCSGFTEN  250 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHH-------HHhhhhccccccccCc--------HHHHHHhccccceeeccccccccchh
Confidence            45666666666665544444332       5566666666666655        55555556666666666654 45554


Q ss_pred             HHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCC--CCChhhHHHHHHHhhcCCC
Q 013056          293 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN--NLCKADARDLGSALVHIPN  370 (450)
Q Consensus       293 ~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~  370 (450)
                      +...+    +.+|+.|+.|+|++|.+..    .....+...++     ++|+.|+|+++  ++.+.   ++..-..++++
T Consensus       251 ~~~ll----~~scs~L~~LNlsWc~l~~----~~Vtv~V~his-----e~l~~LNlsG~rrnl~~s---h~~tL~~rcp~  314 (419)
T KOG2120|consen  251 ALQLL----LSSCSRLDELNLSWCFLFT----EKVTVAVAHIS-----ETLTQLNLSGYRRNLQKS---HLSTLVRRCPN  314 (419)
T ss_pred             HHHHH----HHhhhhHhhcCchHhhccc----hhhhHHHhhhc-----hhhhhhhhhhhHhhhhhh---HHHHHHHhCCc
Confidence            44433    2335666666666665542    11122222222     55666666665  23332   23333445666


Q ss_pred             CCEEecCCC-CCChhhHHHHHHHHHhhcCCCCCcCEEEccCCC
Q 013056          371 LEILDISDN-TIEDDGIRSLIPYFVQASERCNPLVELYLENCE  412 (450)
Q Consensus       371 L~~L~Ls~N-~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~  412 (450)
                      |.+||||.| .+++.-+        ..+.+++.|++|.++.|.
T Consensus       315 l~~LDLSD~v~l~~~~~--------~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  315 LVHLDLSDSVMLKNDCF--------QEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             eeeeccccccccCchHH--------HHHHhcchheeeehhhhc
Confidence            666666653 3444211        223344566666666664

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.13  E-value=1.8e-11  Score=105.95  Aligned_cols=129  Identities=26%  Similarity=0.275  Sum_probs=43.1

Q ss_pred             CCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCCh
Q 013056          276 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCK  355 (450)
Q Consensus       276 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~  355 (450)
                      ...+++|+|.+|.|+..  +.+    -..+.+|+.|+|++|.|+.             +..+..++.|++|++++|.|++
T Consensus        18 ~~~~~~L~L~~n~I~~I--e~L----~~~l~~L~~L~Ls~N~I~~-------------l~~l~~L~~L~~L~L~~N~I~~   78 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTI--ENL----GATLDKLEVLDLSNNQITK-------------LEGLPGLPRLKTLDLSNNRISS   78 (175)
T ss_dssp             --------------------S------TT-TT--EEE-TTS--S---------------TT----TT--EEE--SS---S
T ss_pred             ccccccccccccccccc--cch----hhhhcCCCEEECCCCCCcc-------------ccCccChhhhhhcccCCCCCCc
Confidence            34677788888777641  122    1235678888888888774             1223356778888888888876


Q ss_pred             hhHHHHHHHh-hcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcE
Q 013056          356 ADARDLGSAL-VHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTS  434 (450)
Q Consensus       356 ~~~~~l~~~l-~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~  434 (450)
                           +.+.+ ..+++|++|+|++|+|.+-+  .+     ..+..+++|+.|+|.+|+++...-. =.-.+..+++ |+.
T Consensus        79 -----i~~~l~~~lp~L~~L~L~~N~I~~l~--~l-----~~L~~l~~L~~L~L~~NPv~~~~~Y-R~~vi~~lP~-Lk~  144 (175)
T PF14580_consen   79 -----ISEGLDKNLPNLQELYLSNNKISDLN--EL-----EPLSSLPKLRVLSLEGNPVCEKKNY-RLFVIYKLPS-LKV  144 (175)
T ss_dssp             ------CHHHHHH-TT--EEE-TTS---SCC--CC-----GGGGG-TT--EEE-TT-GGGGSTTH-HHHHHHH-TT--SE
T ss_pred             -----cccchHHhCCcCCEEECcCCcCCChH--Hh-----HHHHcCCCcceeeccCCcccchhhH-HHHHHHHcCh-hhe
Confidence                 43333 35778888888888876521  11     3355668888888888887653211 1122333333 777


Q ss_pred             EEC
Q 013056          435 LSI  437 (450)
Q Consensus       435 L~L  437 (450)
                      ||-
T Consensus       145 LD~  147 (175)
T PF14580_consen  145 LDG  147 (175)
T ss_dssp             ETT
T ss_pred             eCC
Confidence            764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.06  E-value=8e-11  Score=101.92  Aligned_cols=131  Identities=24%  Similarity=0.267  Sum_probs=41.7

Q ss_pred             cCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCC
Q 013056          211 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD  290 (450)
Q Consensus       211 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  290 (450)
                      +...+++|+|++|.|+..  +.+..       .+.+|+.|++++|.|+..          +.+..++.|++|++++|.|+
T Consensus        17 n~~~~~~L~L~~n~I~~I--e~L~~-------~l~~L~~L~Ls~N~I~~l----------~~l~~L~~L~~L~L~~N~I~   77 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI--ENLGA-------TLDKLEVLDLSNNQITKL----------EGLPGLPRLKTLDLSNNRIS   77 (175)
T ss_dssp             ---------------------S--T-------T-TT--EEE-TTS--S------------TT----TT--EEE--SS---
T ss_pred             cccccccccccccccccc--cchhh-------hhcCCCEEECCCCCCccc----------cCccChhhhhhcccCCCCCC
Confidence            344567777777766631  11111       035677777777776652          23445677888888888777


Q ss_pred             hhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCC
Q 013056          291 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN  370 (450)
Q Consensus       291 ~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~  370 (450)
                      .... .+.    ..+++|++|++++|+|.+...          +..+..+++|+.|+|.+|.+++.. .+=...+..+|+
T Consensus        78 ~i~~-~l~----~~lp~L~~L~L~~N~I~~l~~----------l~~L~~l~~L~~L~L~~NPv~~~~-~YR~~vi~~lP~  141 (175)
T PF14580_consen   78 SISE-GLD----KNLPNLQELYLSNNKISDLNE----------LEPLSSLPKLRVLSLEGNPVCEKK-NYRLFVIYKLPS  141 (175)
T ss_dssp             S-CH-HHH----HH-TT--EEE-TTS---SCCC----------CGGGGG-TT--EEE-TT-GGGGST-THHHHHHHH-TT
T ss_pred             cccc-chH----HhCCcCCEEECcCCcCCChHH----------hHHHHcCCCcceeeccCCcccchh-hHHHHHHHHcCh
Confidence            6322 121    125778888888887765321          233335577777777777766432 122334566777


Q ss_pred             CCEEec
Q 013056          371 LEILDI  376 (450)
Q Consensus       371 L~~L~L  376 (450)
                      |+.||-
T Consensus       142 Lk~LD~  147 (175)
T PF14580_consen  142 LKVLDG  147 (175)
T ss_dssp             -SEETT
T ss_pred             hheeCC
Confidence            777764

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.99  E-value=2.9e-11  Score=109.56  Aligned_cols=131  Identities=24%  Similarity=0.275  Sum_probs=75.5

Q ss_pred             CCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChh
Q 013056          277 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKA  356 (450)
Q Consensus       277 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~  356 (450)
                      +.|+++|||+|.|+.. -+.+     .-.+.++.|++|+|.|...             +.+.++++|+.|||++|.++. 
T Consensus       284 q~LtelDLS~N~I~~i-DESv-----KL~Pkir~L~lS~N~i~~v-------------~nLa~L~~L~~LDLS~N~Ls~-  343 (490)
T KOG1259|consen  284 QELTELDLSGNLITQI-DESV-----KLAPKLRRLILSQNRIRTV-------------QNLAELPQLQLLDLSGNLLAE-  343 (490)
T ss_pred             hhhhhccccccchhhh-hhhh-----hhccceeEEeccccceeee-------------hhhhhcccceEeecccchhHh-
Confidence            4566777777766541 1111     1146777777777776531             223355677777777777664 


Q ss_pred             hHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 013056          357 DARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLS  436 (450)
Q Consensus       357 ~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~  436 (450)
                          +-.+=.++.+.++|.|+.|.|.+      +    ..++++-+|..||+++|+|....   -..++.+++. |+++.
T Consensus       344 ----~~Gwh~KLGNIKtL~La~N~iE~------L----SGL~KLYSLvnLDl~~N~Ie~ld---eV~~IG~LPC-LE~l~  405 (490)
T KOG1259|consen  344 ----CVGWHLKLGNIKTLKLAQNKIET------L----SGLRKLYSLVNLDLSSNQIEELD---EVNHIGNLPC-LETLR  405 (490)
T ss_pred             ----hhhhHhhhcCEeeeehhhhhHhh------h----hhhHhhhhheeccccccchhhHH---HhcccccccH-HHHHh
Confidence                32222355667777777777655      2    23444456777777777765521   2344555444 77777


Q ss_pred             CcCCCCCcc
Q 013056          437 IADNNLGRF  445 (450)
Q Consensus       437 L~~N~l~~~  445 (450)
                      |.+|+|...
T Consensus       406 L~~NPl~~~  414 (490)
T KOG1259|consen  406 LTGNPLAGS  414 (490)
T ss_pred             hcCCCcccc
Confidence            777776553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.94  E-value=1.7e-11  Score=119.72  Aligned_cols=137  Identities=23%  Similarity=0.274  Sum_probs=75.4

Q ss_pred             HHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEc
Q 013056          269 LVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNL  348 (450)
Q Consensus       269 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L  348 (450)
                      ++..++++..|++|||+.|+++. .|..+|.      .-|+.|.+++|+++.         +|..++   ....|..|+.
T Consensus       113 ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~------lpLkvli~sNNkl~~---------lp~~ig---~~~tl~~ld~  173 (722)
T KOG0532|consen  113 IPEAICNLEALTFLDLSSNQLSH-LPDGLCD------LPLKVLIVSNNKLTS---------LPEEIG---LLPTLAHLDV  173 (722)
T ss_pred             cchhhhhhhHHHHhhhccchhhc-CChhhhc------CcceeEEEecCcccc---------CCcccc---cchhHHHhhh
Confidence            34444455556666666665554 4444432      346666666666554         344444   2355666666


Q ss_pred             cCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcC
Q 013056          349 RGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTL  428 (450)
Q Consensus       349 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l  428 (450)
                      +.|.|..     +|..++.+.+|+.|.+..|++.+      +|   ..+. .-.|..||+++|+++.     ++-.+.++
T Consensus       174 s~nei~s-----lpsql~~l~slr~l~vrRn~l~~------lp---~El~-~LpLi~lDfScNkis~-----iPv~fr~m  233 (722)
T KOG0532|consen  174 SKNEIQS-----LPSQLGYLTSLRDLNVRRNHLED------LP---EELC-SLPLIRLDFSCNKISY-----LPVDFRKM  233 (722)
T ss_pred             hhhhhhh-----chHHhhhHHHHHHHHHhhhhhhh------CC---HHHh-CCceeeeecccCceee-----cchhhhhh
Confidence            6666553     56666666666666666666555      33   2333 2356666666666665     55555554


Q ss_pred             CCCCcEEECcCCCCCcc
Q 013056          429 RRPPTSLSIADNNLGRF  445 (450)
Q Consensus       429 ~~~L~~L~L~~N~l~~~  445 (450)
                       ++|++|-|.+|++++.
T Consensus       234 -~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  234 -RHLQVLQLENNPLQSP  249 (722)
T ss_pred             -hhheeeeeccCCCCCC
Confidence             2366666666666554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.94  E-value=2.6e-10  Score=103.48  Aligned_cols=191  Identities=20%  Similarity=0.200  Sum_probs=126.0

Q ss_pred             HhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHH---HH-HHHHHhcc-----------ccC
Q 013056          179 CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFV---EG-ICRSLCSK-----------RKR  243 (450)
Q Consensus       179 ~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~---~~-l~~~L~~~-----------~~~  243 (450)
                      ..+.-..+|..+.+|++.-..... +    ...-|.|+.+...+..+++...   .. ++..+...           ...
T Consensus       208 f~l~~f~~l~~~~~s~~~~~~i~~-~----~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dT  282 (490)
T KOG1259|consen  208 FNLNAFRNLKTLKFSALSTENIVD-I----ELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADT  282 (490)
T ss_pred             cchHHhhhhheeeeeccchhheec-e----eecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecch
Confidence            344445777888888876332211 1    1223677777776665543211   11 11000000           000


Q ss_pred             CCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccc
Q 013056          244 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS  323 (450)
Q Consensus       244 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~  323 (450)
                      -..|++++|++|.|+.         +-+..+-.|.++.|++|+|.+...+-  ++     .+++|+.||||+|.++..  
T Consensus       283 Wq~LtelDLS~N~I~~---------iDESvKL~Pkir~L~lS~N~i~~v~n--La-----~L~~L~~LDLS~N~Ls~~--  344 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQ---------IDESVKLAPKLRRLILSQNRIRTVQN--LA-----ELPQLQLLDLSGNLLAEC--  344 (490)
T ss_pred             Hhhhhhccccccchhh---------hhhhhhhccceeEEeccccceeeehh--hh-----hcccceEeecccchhHhh--
Confidence            1348899999999877         34445556999999999999876333  32     269999999999987631  


Q ss_pred             ccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCc
Q 013056          324 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL  403 (450)
Q Consensus       324 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L  403 (450)
                                -+--..+-++++|+|++|.|.+      -..+.++-+|..||+++|+|..      +... ..+++++-|
T Consensus       345 ----------~Gwh~KLGNIKtL~La~N~iE~------LSGL~KLYSLvnLDl~~N~Ie~------ldeV-~~IG~LPCL  401 (490)
T KOG1259|consen  345 ----------VGWHLKLGNIKTLKLAQNKIET------LSGLRKLYSLVNLDLSSNQIEE------LDEV-NHIGNLPCL  401 (490)
T ss_pred             ----------hhhHhhhcCEeeeehhhhhHhh------hhhhHhhhhheeccccccchhh------HHHh-cccccccHH
Confidence                      1111256789999999999875      3457888899999999999976      3322 567888999


Q ss_pred             CEEEccCCCCCh
Q 013056          404 VELYLENCELSG  415 (450)
Q Consensus       404 ~~L~L~~n~l~~  415 (450)
                      +.|.|.+|.+..
T Consensus       402 E~l~L~~NPl~~  413 (490)
T KOG1259|consen  402 ETLRLTGNPLAG  413 (490)
T ss_pred             HHHhhcCCCccc
Confidence            999999999765

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.92  E-value=2.1e-09  Score=101.84  Aligned_cols=229  Identities=21%  Similarity=0.261  Sum_probs=124.7

Q ss_pred             chhhcccccCcchh-h-hHhhh-cCCCccEEEeeccc-ChH-HHHHH----------------------HHHHHhcCCCc
Q 013056          163 YARCLRLQNALCVE-E-TCQLL-RESKLQSLVLRWIR-FEE-HVQAL----------------------CKLLIQNSETL  215 (450)
Q Consensus       163 ~l~~l~L~~~~~~~-~-~~~l~-~~~~L~~L~Ls~n~-~~~-~~~~l----------------------~~~l~~~~~~L  215 (450)
                      .++.+.+..|...+ . ...+. .+++|++|++|.+. +.+ .+..+                      +......+.-+
T Consensus       191 ~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i  270 (483)
T KOG4341|consen  191 KLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEI  270 (483)
T ss_pred             hhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHh
Confidence            45566666644332 1 12233 67888888888876 221 11111                      11111222334


Q ss_pred             cEEEccCC-CCChhHHHHHHHHHhccccCCCCeeEEEcCCCCC-CCCCchhhHHHHHHhh-cCCCCCCEEecCCC-CCCh
Q 013056          216 ASLEFLHC-KLSPSFVEGICRSLCSKRKRIHKIENLSIDISSF-IENCPSSVVVELVSFL-SSGRSLCSLKLRHC-HLDR  291 (450)
Q Consensus       216 ~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i-~~~~~~~~~~~l~~~l-~~~~~L~~L~Ls~n-~l~~  291 (450)
                      ..+++.+| .++|...-.++..       ++.||.|..+++.. ++        .....+ .++++|+.|-++.+ ++++
T Consensus       271 ~~lnl~~c~~lTD~~~~~i~~~-------c~~lq~l~~s~~t~~~d--------~~l~aLg~~~~~L~~l~l~~c~~fsd  335 (483)
T KOG4341|consen  271 LKLNLQHCNQLTDEDLWLIACG-------CHALQVLCYSSCTDITD--------EVLWALGQHCHNLQVLELSGCQQFSD  335 (483)
T ss_pred             hccchhhhccccchHHHHHhhh-------hhHhhhhcccCCCCCch--------HHHHHHhcCCCceEEEeccccchhhh
Confidence            44444444 4555554444443       55566666655532 22        222233 34566777777666 3555


Q ss_pred             hHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCC-CCCCceeEEEccCC-CCChhhHHHHHHHhhcCC
Q 013056          292 DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG-KSLQSLRLLNLRGN-NLCKADARDLGSALVHIP  369 (450)
Q Consensus       292 ~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~-~~l~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~  369 (450)
                      .+...+.    .+++.|+.+++..+.....          ..+..+ .+|+.|++|.|+.| .|+++|+.++...-..+.
T Consensus       336 ~~ft~l~----rn~~~Le~l~~e~~~~~~d----------~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~  401 (483)
T KOG4341|consen  336 RGFTMLG----RNCPHLERLDLEECGLITD----------GTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE  401 (483)
T ss_pred             hhhhhhh----cCChhhhhhcccccceehh----------hhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc
Confidence            5554443    3456677776666654320          223333 46677777777777 577777777666666677


Q ss_pred             CCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCC-CChhHHHHHHHHHhc
Q 013056          370 NLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE-LSGRGVSQLLDTLST  427 (450)
Q Consensus       370 ~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~l~~  427 (450)
                      .|+.|.|+++..+.+.   ..    +.+..|++|+.+++-+|+ ++.+++..+...+.+
T Consensus       402 ~l~~lEL~n~p~i~d~---~L----e~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~  453 (483)
T KOG4341|consen  402 GLEVLELDNCPLITDA---TL----EHLSICRNLERIELIDCQDVTKEAISRFATHLPN  453 (483)
T ss_pred             ccceeeecCCCCchHH---HH----HHHhhCcccceeeeechhhhhhhhhHHHHhhCcc
Confidence            7777777776553321   01    334566777777777775 666666666655544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.86  E-value=2e-09  Score=107.32  Aligned_cols=60  Identities=35%  Similarity=0.427  Sum_probs=28.8

Q ss_pred             CceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056          341 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  415 (450)
Q Consensus       341 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  415 (450)
                      .++..|.+.+|++..     ++..+..+++++.|++++|.+++      ++    .+....+++.|++++|.++.
T Consensus       232 ~~l~~l~l~~n~~~~-----~~~~~~~l~~l~~L~~s~n~i~~------i~----~~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         232 KNLSGLELSNNKLED-----LPESIGNLSNLETLDLSNNQISS------IS----SLGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             ccccccccCCceeee-----ccchhccccccceeccccccccc------cc----cccccCccCEEeccCccccc
Confidence            444444455555443     23444445555555555555554      32    13444555555555555443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.81  E-value=3.2e-09  Score=105.88  Aligned_cols=197  Identities=25%  Similarity=0.291  Sum_probs=127.8

Q ss_pred             EEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCC-CeeEEEcCCCCCCCCCchhhHH
Q 013056          189 SLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIH-KIENLSIDISSFIENCPSSVVV  267 (450)
Q Consensus       189 ~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~-~L~~L~L~~n~i~~~~~~~~~~  267 (450)
                      .++++.+........+     .....++.|++.+|.+++.....-.         .. +|+.|++++|.+..        
T Consensus        97 ~l~~~~~~~~~~~~~~-----~~~~~l~~L~l~~n~i~~i~~~~~~---------~~~nL~~L~l~~N~i~~--------  154 (394)
T COG4886          97 SLDLNLNRLRSNISEL-----LELTNLTSLDLDNNNITDIPPLIGL---------LKSNLKELDLSDNKIES--------  154 (394)
T ss_pred             eeeccccccccCchhh-----hcccceeEEecCCcccccCcccccc---------chhhcccccccccchhh--------
Confidence            4666666542222221     2336778888888877743332210         22 68888888888765        


Q ss_pred             HHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEE
Q 013056          268 ELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLN  347 (450)
Q Consensus       268 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~  347 (450)
                       ++..+..+++|+.|++++|++.+ .+....     ..+.|+.|++++|.+..         +|..+.   ....|++|.
T Consensus       155 -l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~-----~~~~L~~L~ls~N~i~~---------l~~~~~---~~~~L~~l~  215 (394)
T COG4886         155 -LPSPLRNLPNLKNLDLSFNDLSD-LPKLLS-----NLSNLNNLDLSGNKISD---------LPPEIE---LLSALEELD  215 (394)
T ss_pred             -hhhhhhccccccccccCCchhhh-hhhhhh-----hhhhhhheeccCCcccc---------Cchhhh---hhhhhhhhh
Confidence             33556678888888888888877 333221     25788888888888876         334332   225588888


Q ss_pred             ccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhc
Q 013056          348 LRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLST  427 (450)
Q Consensus       348 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~  427 (450)
                      +++|.+..     ++..+..++++..|.+++|++.+      .+   ..+..+++++.|++++|.++..     .. +..
T Consensus       216 ~~~N~~~~-----~~~~~~~~~~l~~l~l~~n~~~~------~~---~~~~~l~~l~~L~~s~n~i~~i-----~~-~~~  275 (394)
T COG4886         216 LSNNSIIE-----LLSSLSNLKNLSGLELSNNKLED------LP---ESIGNLSNLETLDLSNNQISSI-----SS-LGS  275 (394)
T ss_pred             hcCCccee-----cchhhhhcccccccccCCceeee------cc---chhccccccceecccccccccc-----cc-ccc
Confidence            88885432     56667778888888888888776      22   3456667788888888888873     32 444


Q ss_pred             CCCCCcEEECcCCCCCcccc
Q 013056          428 LRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       428 l~~~L~~L~L~~N~l~~~~~  447 (450)
                       -.+++.|++++|.+....+
T Consensus       276 -~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         276 -LTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             -cCccCEEeccCccccccch
Confidence             2448888888887765433

>PLN03150 hypothetical protein; Provisional

Probab=98.68  E-value=3.9e-08  Score=103.21  Aligned_cols=108  Identities=28%  Similarity=0.420  Sum_probs=61.6

Q ss_pred             CcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHH
Q 013056          308 LSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIR  387 (450)
Q Consensus       308 L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~  387 (450)
                      ++.|+|++|.+.+..|        ..++   .+++|+.|+|++|.++.    .+|..+..+++|+.|+|++|+++..   
T Consensus       420 v~~L~L~~n~L~g~ip--------~~i~---~L~~L~~L~Ls~N~l~g----~iP~~~~~l~~L~~LdLs~N~lsg~---  481 (623)
T PLN03150        420 IDGLGLDNQGLRGFIP--------NDIS---KLRHLQSINLSGNSIRG----NIPPSLGSITSLEVLDLSYNSFNGS---  481 (623)
T ss_pred             EEEEECCCCCccccCC--------HHHh---CCCCCCEEECCCCcccC----cCChHHhCCCCCCEEECCCCCCCCC---
Confidence            5566666666665444        4444   34566666666666654    3566666666666666666666543   


Q ss_pred             HHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCC
Q 013056          388 SLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL  442 (450)
Q Consensus       388 ~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l  442 (450)
                        +|   ..+..+++|+.|+|++|.++..    ++..+.....++..+++.+|..
T Consensus       482 --iP---~~l~~L~~L~~L~Ls~N~l~g~----iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        482 --IP---ESLGQLTSLRILNLNGNSLSGR----VPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             --Cc---hHHhcCCCCCEEECcCCccccc----CChHHhhccccCceEEecCCcc
Confidence              44   3455556666666666666654    4444433222355666666643

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.63  E-value=8.6e-10  Score=108.11  Aligned_cols=193  Identities=18%  Similarity=0.179  Sum_probs=141.3

Q ss_pred             hhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCC
Q 013056          165 RCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRI  244 (450)
Q Consensus       165 ~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~  244 (450)
                      ...+++.|...+++..+..+..|+.+.|.+|.+-.....     ..++..|+.|||+.|+++- .+..+|         .
T Consensus        78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-----i~~L~~lt~l~ls~NqlS~-lp~~lC---------~  142 (722)
T KOG0532|consen   78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-----ICNLEALTFLDLSSNQLSH-LPDGLC---------D  142 (722)
T ss_pred             hhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-----hhhhhHHHHhhhccchhhc-CChhhh---------c
Confidence            344777788888887777777888888887775444333     3466778889999998873 333343         2


Q ss_pred             CCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccc
Q 013056          245 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK  324 (450)
Q Consensus       245 ~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~  324 (450)
                      ..|+.|-+++|+++.         ++..++..+.|.+||.+.|.+.. .+..++.     +.+|+.|.+..|++..    
T Consensus       143 lpLkvli~sNNkl~~---------lp~~ig~~~tl~~ld~s~nei~s-lpsql~~-----l~slr~l~vrRn~l~~----  203 (722)
T KOG0532|consen  143 LPLKVLIVSNNKLTS---------LPEEIGLLPTLAHLDVSKNEIQS-LPSQLGY-----LTSLRDLNVRRNHLED----  203 (722)
T ss_pred             CcceeEEEecCcccc---------CCcccccchhHHHhhhhhhhhhh-chHHhhh-----HHHHHHHHHhhhhhhh----
Confidence            668999999999877         56666777899999999998876 5665644     5789999999999876    


Q ss_pred             cCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcC
Q 013056          325 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV  404 (450)
Q Consensus       325 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~  404 (450)
                           +|..+..    -.|..||++.|+|..     ||-.+.+|..|++|-|.+|.+...-+.....      +..--.+
T Consensus       204 -----lp~El~~----LpLi~lDfScNkis~-----iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~k------GkVHIFK  263 (722)
T KOG0532|consen  204 -----LPEELCS----LPLIRLDFSCNKISY-----LPVDFRKMRHLQVLQLENNPLQSPPAQICEK------GKVHIFK  263 (722)
T ss_pred             -----CCHHHhC----CceeeeecccCceee-----cchhhhhhhhheeeeeccCCCCCChHHHHhc------cceeeee
Confidence                 5666663    358999999999995     9999999999999999999997743333322      2222345


Q ss_pred             EEEccCC
Q 013056          405 ELYLENC  411 (450)
Q Consensus       405 ~L~L~~n  411 (450)
                      +|+..-|
T Consensus       264 yL~~qA~  270 (722)
T KOG0532|consen  264 YLSTQAC  270 (722)
T ss_pred             eecchhc
Confidence            6666666

>PLN03150 hypothetical protein; Provisional

Probab=98.51  E-value=2.4e-07  Score=97.23  Aligned_cols=85  Identities=35%  Similarity=0.441  Sum_probs=38.6

Q ss_pred             eeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccC
Q 013056          247 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD  326 (450)
Q Consensus       247 L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~  326 (450)
                      ++.|+|++|.+.+        .++..+..+++|+.|+|++|.+.+..+..+     ..+++|+.|+|++|.+.+..|   
T Consensus       420 v~~L~L~~n~L~g--------~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-----~~l~~L~~LdLs~N~lsg~iP---  483 (623)
T PLN03150        420 IDGLGLDNQGLRG--------FIPNDISKLRHLQSINLSGNSIRGNIPPSL-----GSITSLEVLDLSYNSFNGSIP---  483 (623)
T ss_pred             EEEEECCCCCccc--------cCCHHHhCCCCCCEEECCCCcccCcCChHH-----hCCCCCCEEECCCCCCCCCCc---
Confidence            4444555554444        333344444555555555555444343333     224455555555555444333   


Q ss_pred             cccHHHhhhCCCCCCceeEEEccCCCCCh
Q 013056          327 RSGPLFSLGAGKSLQSLRLLNLRGNNLCK  355 (450)
Q Consensus       327 ~~~l~~~l~~~~~l~~L~~L~L~~n~l~~  355 (450)
                           ..++   .+++|+.|+|++|.++.
T Consensus       484 -----~~l~---~L~~L~~L~Ls~N~l~g  504 (623)
T PLN03150        484 -----ESLG---QLTSLRILNLNGNSLSG  504 (623)
T ss_pred             -----hHHh---cCCCCCEEECcCCcccc
Confidence                 3333   33445555555554443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.48  E-value=1.2e-08  Score=102.77  Aligned_cols=129  Identities=27%  Similarity=0.258  Sum_probs=91.4

Q ss_pred             CeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccccc
Q 013056          246 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY  325 (450)
Q Consensus       246 ~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~  325 (450)
                      .|...+.++|.++.         +-..+.-++.|++|||+.|+++...  .+     ..++.|++|||+.|.+...    
T Consensus       165 ~L~~a~fsyN~L~~---------mD~SLqll~ale~LnLshNk~~~v~--~L-----r~l~~LkhLDlsyN~L~~v----  224 (1096)
T KOG1859|consen  165 KLATASFSYNRLVL---------MDESLQLLPALESLNLSHNKFTKVD--NL-----RRLPKLKHLDLSYNCLRHV----  224 (1096)
T ss_pred             hHhhhhcchhhHHh---------HHHHHHHHHHhhhhccchhhhhhhH--HH-----Hhcccccccccccchhccc----
Confidence            35566677777654         4455666789999999999987622  22     2379999999999998742    


Q ss_pred             CcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCE
Q 013056          326 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVE  405 (450)
Q Consensus       326 ~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~  405 (450)
                           |. ++ ... ..|..|++++|.++.      -..+.++.+|+.||+++|-|.+.  ..|.|     +..+..|..
T Consensus       225 -----p~-l~-~~g-c~L~~L~lrnN~l~t------L~gie~LksL~~LDlsyNll~~h--seL~p-----LwsLs~L~~  283 (1096)
T KOG1859|consen  225 -----PQ-LS-MVG-CKLQLLNLRNNALTT------LRGIENLKSLYGLDLSYNLLSEH--SELEP-----LWSLSSLIV  283 (1096)
T ss_pred             -----cc-cc-hhh-hhheeeeecccHHHh------hhhHHhhhhhhccchhHhhhhcc--hhhhH-----HHHHHHHHH
Confidence                 11 11 113 349999999999885      34578899999999999988653  22322     344478899


Q ss_pred             EEccCCCCCh
Q 013056          406 LYLENCELSG  415 (450)
Q Consensus       406 L~L~~n~l~~  415 (450)
                      |+|.+|.+-.
T Consensus       284 L~LeGNPl~c  293 (1096)
T KOG1859|consen  284 LWLEGNPLCC  293 (1096)
T ss_pred             HhhcCCcccc
Confidence            9999998754

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.46  E-value=2.5e-07  Score=84.35  Aligned_cols=65  Identities=18%  Similarity=0.209  Sum_probs=32.1

Q ss_pred             CceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056          341 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  415 (450)
Q Consensus       341 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  415 (450)
                      +++..+.+..|.|.+..   -.+.....+.+.-|+|+.|+|.+      ..++ +++..++.|..|.++++.+.+
T Consensus       199 pnv~sv~v~e~PlK~~s---~ek~se~~p~~~~LnL~~~~ids------wasv-D~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  199 PNVNSVFVCEGPLKTES---SEKGSEPFPSLSCLNLGANNIDS------WASV-DALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             ccchheeeecCcccchh---hcccCCCCCcchhhhhccccccc------HHHH-HHHcCCchhheeeccCCcccc
Confidence            45555555555554422   12233444555555666666554      2221 445555566666666665544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.45  E-value=3.3e-08  Score=99.05  Aligned_cols=234  Identities=23%  Similarity=0.192  Sum_probs=136.7

Q ss_pred             cccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCC
Q 013056          167 LRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHK  246 (450)
Q Consensus       167 l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~  246 (450)
                      +.+..+.+..+...+..+.+|+.|++.+|.+......     ...+++|++|++++|.|++...-.-          +..
T Consensus        77 l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-----l~~~~~L~~L~ls~N~I~~i~~l~~----------l~~  141 (414)
T KOG0531|consen   77 LNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-----LSSLVNLQVLDLSFNKITKLEGLST----------LTL  141 (414)
T ss_pred             hccchhhhhhhhcccccccceeeeeccccchhhcccc-----hhhhhcchheeccccccccccchhh----------ccc
Confidence            3345555554444566778899999988885543221     3467889999999998885432221          456


Q ss_pred             eeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccC
Q 013056          247 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD  326 (450)
Q Consensus       247 L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~  326 (450)
                      |+.|++++|.|+..          ..+..++.|+.+++++|.+.......+     ..+.+++.+++++|.+........
T Consensus       142 L~~L~l~~N~i~~~----------~~~~~l~~L~~l~l~~n~i~~ie~~~~-----~~~~~l~~l~l~~n~i~~i~~~~~  206 (414)
T KOG0531|consen  142 LKELNLSGNLISDI----------SGLESLKSLKLLDLSYNRIVDIENDEL-----SELISLEELDLGGNSIREIEGLDL  206 (414)
T ss_pred             hhhheeccCcchhc----------cCCccchhhhcccCCcchhhhhhhhhh-----hhccchHHHhccCCchhcccchHH
Confidence            88899999988663          233347888999999998876433101     235788888888888764211000


Q ss_pred             cccHH------HhhhCCCC---CCc--eeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHh
Q 013056          327 RSGPL------FSLGAGKS---LQS--LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQ  395 (450)
Q Consensus       327 ~~~l~------~~l~~~~~---l~~--L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~  395 (450)
                      ...+.      ..+..+..   +..  |+.+++++|.+..     ++..+..+..+..|+++.|++..      .    .
T Consensus       207 ~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~-----~~~~~~~~~~l~~l~~~~n~~~~------~----~  271 (414)
T KOG0531|consen  207 LKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISR-----SPEGLENLKNLPVLDLSSNRISN------L----E  271 (414)
T ss_pred             HHHHHHhhcccccceeccCcccchhHHHHHHhcccCcccc-----ccccccccccccccchhhccccc------c----c
Confidence            00000      01111111   111  6677777777764     33556667777788887777765      2    2


Q ss_pred             hcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 013056          396 ASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC  446 (450)
Q Consensus       396 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~  446 (450)
                      .+...+.+..+.+..|.+.......-...... ..+++.+.+.+|++...-
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  321 (414)
T KOG0531|consen  272 GLERLPKLSELWLNDNKLALSEAISQEYITSA-APTLVTLTLELNPIRKIS  321 (414)
T ss_pred             cccccchHHHhccCcchhcchhhhhccccccc-cccccccccccCcccccc
Confidence            23444566666666666553211111111333 334777777777776543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.44  E-value=1.9e-07  Score=85.12  Aligned_cols=40  Identities=38%  Similarity=0.400  Sum_probs=18.5

Q ss_pred             CceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCCh
Q 013056          341 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED  383 (450)
Q Consensus       341 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~  383 (450)
                      +.+.-|+|+.|+|.+=.   -..++.++++|+.|.+++|.+.|
T Consensus       224 p~~~~LnL~~~~idswa---svD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  224 PSLSCLNLGANNIDSWA---SVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             CcchhhhhcccccccHH---HHHHHcCCchhheeeccCCcccc
Confidence            33444555555554311   11234455555555555555543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.43  E-value=4.7e-08  Score=69.52  Aligned_cols=59  Identities=36%  Similarity=0.511  Sum_probs=32.7

Q ss_pred             ceeEEEccCCCCChhhHHHHH-HHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCC
Q 013056          342 SLRLLNLRGNNLCKADARDLG-SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCEL  413 (450)
Q Consensus       342 ~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l  413 (450)
                      +|++|++++|+|+.     ++ ..+..+++|++|++++|.|+.      ++.  .+|..+++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~-----i~~~~f~~l~~L~~L~l~~N~l~~------i~~--~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTE-----IPPDSFSNLPNLETLDLSNNNLTS------IPP--DAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESE-----ECTTTTTTGTTESEEEETSSSESE------EET--TTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCc-----cCHHHHcCCCCCCEeEccCCccCc------cCH--HHHcCCCCCCEEeCcCCcC
Confidence            45556666665554     33 244556666666666666654      221  4455666666666666653

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.40  E-value=1.4e-06  Score=91.60  Aligned_cols=151  Identities=23%  Similarity=0.293  Sum_probs=103.4

Q ss_pred             CCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccc
Q 013056          245 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK  324 (450)
Q Consensus       245 ~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~  324 (450)
                      .+|++|++++......      .+....-..+|+|++|.+++-.+..+....+|.    ++++|..||+|+++++..   
T Consensus       122 ~nL~~LdI~G~~~~s~------~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~----sFpNL~sLDIS~TnI~nl---  188 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSN------GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCA----SFPNLRSLDISGTNISNL---  188 (699)
T ss_pred             HhhhhcCccccchhhc------cHHHHHhhhCcccceEEecCceecchhHHHHhh----ccCccceeecCCCCccCc---
Confidence            6788999988643321      144444456899999999988776655455554    479999999999998851   


Q ss_pred             cCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcC
Q 013056          325 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV  404 (450)
Q Consensus       325 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~  404 (450)
                             .+++   ++++|++|.+.+=.+....  .+ ..+..+++|+.||+|..+..+.- + ++.-..+.-..+|+|+
T Consensus       189 -------~GIS---~LknLq~L~mrnLe~e~~~--~l-~~LF~L~~L~vLDIS~~~~~~~~-~-ii~qYlec~~~LpeLr  253 (699)
T KOG3665|consen  189 -------SGIS---RLKNLQVLSMRNLEFESYQ--DL-IDLFNLKKLRVLDISRDKNNDDT-K-IIEQYLECGMVLPELR  253 (699)
T ss_pred             -------HHHh---ccccHHHHhccCCCCCchh--hH-HHHhcccCCCeeeccccccccch-H-HHHHHHHhcccCcccc
Confidence                   3445   6688999988887776521  22 34677999999999987665432 1 1211125556689999


Q ss_pred             EEEccCCCCChhHHHHHHH
Q 013056          405 ELYLENCELSGRGVSQLLD  423 (450)
Q Consensus       405 ~L~L~~n~l~~~g~~~l~~  423 (450)
                      .||.|+..++...++.+.+
T Consensus       254 fLDcSgTdi~~~~le~ll~  272 (699)
T KOG3665|consen  254 FLDCSGTDINEEILEELLN  272 (699)
T ss_pred             EEecCCcchhHHHHHHHHH
Confidence            9999999888875544433

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.39  E-value=3.1e-08  Score=99.88  Aligned_cols=128  Identities=23%  Similarity=0.208  Sum_probs=89.6

Q ss_pred             CCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhh
Q 013056          278 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKAD  357 (450)
Q Consensus       278 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~  357 (450)
                      .|.+.+.++|.+.- .-..+     .-++.++.|+|++|++++.          ..+   ..|+.|++|||+.|.++.  
T Consensus       165 ~L~~a~fsyN~L~~-mD~SL-----qll~ale~LnLshNk~~~v----------~~L---r~l~~LkhLDlsyN~L~~--  223 (1096)
T KOG1859|consen  165 KLATASFSYNRLVL-MDESL-----QLLPALESLNLSHNKFTKV----------DNL---RRLPKLKHLDLSYNCLRH--  223 (1096)
T ss_pred             hHhhhhcchhhHHh-HHHHH-----HHHHHhhhhccchhhhhhh----------HHH---Hhcccccccccccchhcc--
Confidence            56777888887754 22222     1257899999999998851          233   367999999999999885  


Q ss_pred             HHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEEC
Q 013056          358 ARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSI  437 (450)
Q Consensus       358 ~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L  437 (450)
                         +|..-..-..|+.|.|++|.++.      +    ..+.++++|+.||+++|-|.+..--...-.+..    |+.|+|
T Consensus       224 ---vp~l~~~gc~L~~L~lrnN~l~t------L----~gie~LksL~~LDlsyNll~~hseL~pLwsLs~----L~~L~L  286 (1096)
T KOG1859|consen  224 ---VPQLSMVGCKLQLLNLRNNALTT------L----RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSS----LIVLWL  286 (1096)
T ss_pred             ---ccccchhhhhheeeeecccHHHh------h----hhHHhhhhhhccchhHhhhhcchhhhHHHHHHH----HHHHhh
Confidence               55532222349999999999876      3    335566899999999998776432223333444    899999


Q ss_pred             cCCCCC
Q 013056          438 ADNNLG  443 (450)
Q Consensus       438 ~~N~l~  443 (450)
                      .||++-
T Consensus       287 eGNPl~  292 (1096)
T KOG1859|consen  287 EGNPLC  292 (1096)
T ss_pred             cCCccc
Confidence            999874

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.38  E-value=1.2e-06  Score=89.55  Aligned_cols=92  Identities=25%  Similarity=0.301  Sum_probs=45.3

Q ss_pred             hcCCCccEEEeecc-cChHHHHHHHHHHHhcCCCccEEEccCCC-CChhHHHHHHHHHhccccCCCCeeEEEcCCCC-CC
Q 013056          182 LRESKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCSKRKRIHKIENLSIDISS-FI  258 (450)
Q Consensus       182 ~~~~~L~~L~Ls~n-~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~-i~  258 (450)
                      ..+++|++|+++++ ............+...+++|+.|+++++. +++.+...++..       |++|+.|.+.+|. ++
T Consensus       211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~-------c~~L~~L~l~~c~~lt  283 (482)
T KOG1947|consen  211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR-------CPNLETLSLSNCSNLT  283 (482)
T ss_pred             hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh-------CCCcceEccCCCCccc
Confidence            35566666666542 11111111111134445556666666664 566665555554       5556666655554 44


Q ss_pred             CCCchhhHHHHHHhhcCCCCCCEEecCCC
Q 013056          259 ENCPSSVVVELVSFLSSGRSLCSLKLRHC  287 (450)
Q Consensus       259 ~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n  287 (450)
                      +.       .+.....++++|++|+++++
T Consensus       284 ~~-------gl~~i~~~~~~L~~L~l~~c  305 (482)
T KOG1947|consen  284 DE-------GLVSIAERCPSLRELDLSGC  305 (482)
T ss_pred             hh-------HHHHHHHhcCcccEEeeecC
Confidence            41       34444445555666666655

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.35  E-value=1.6e-07  Score=66.75  Aligned_cols=61  Identities=34%  Similarity=0.464  Sum_probs=43.2

Q ss_pred             CCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCC
Q 013056          306 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTI  381 (450)
Q Consensus       306 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l  381 (450)
                      ++|++|++++|.+....+           ..+..+++|++|++++|.|+.    .-+.++..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~-----------~~f~~l~~L~~L~l~~N~l~~----i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPP-----------DSFSNLPNLETLDLSNNNLTS----IPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECT-----------TTTTTGTTESEEEETSSSESE----EETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCH-----------HHHcCCCCCCEeEccCCccCc----cCHHHHcCCCCCCEEeCcCCcC
Confidence            467788888887775333           334466888888888888876    1234677888888888888875

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.34  E-value=1.5e-06  Score=88.81  Aligned_cols=220  Identities=22%  Similarity=0.211  Sum_probs=121.8

Q ss_pred             cCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCC--CCChhH--HHHHHHHHhccccCCCCeeEEEcCCCC-C
Q 013056          183 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHC--KLSPSF--VEGICRSLCSKRKRIHKIENLSIDISS-F  257 (450)
Q Consensus       183 ~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n--~l~~~~--~~~l~~~L~~~~~~~~~L~~L~L~~n~-i  257 (450)
                      .++.|+.|.+..+.......  ...+...++.|+.|+++++  .+....  ...+...       +.+|+.|+++.+. +
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-------~~~L~~l~l~~~~~i  256 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSI-------CRKLKSLDLSGCGLV  256 (482)
T ss_pred             hCchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhhhhh-------cCCcCccchhhhhcc
Confidence            35788888887765221111  2333567788888888873  222222  1222222       6778888888776 6


Q ss_pred             CCCCchhhHHHHHHhhcCCCCCCEEecCCCC-CChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhC
Q 013056          258 IENCPSSVVVELVSFLSSGRSLCSLKLRHCH-LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA  336 (450)
Q Consensus       258 ~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~  336 (450)
                      ++.       .+......+++|++|.+.++. +++.+...+++.    ++.|++|++++|.....      ..+..... 
T Consensus       257 sd~-------~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~----~~~L~~L~l~~c~~~~d------~~l~~~~~-  318 (482)
T KOG1947|consen  257 TDI-------GLSALASRCPNLETLSLSNCSNLTDEGLVSIAER----CPSLRELDLSGCHGLTD------SGLEALLK-  318 (482)
T ss_pred             Cch-------hHHHHHhhCCCcceEccCCCCccchhHHHHHHHh----cCcccEEeeecCccchH------HHHHHHHH-
Confidence            662       222222347788888877775 777777777654    67788888887764310      11212222 


Q ss_pred             CCCCCceeEEEccCC----CCChhhHHH---------HHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCC-
Q 013056          337 GKSLQSLRLLNLRGN----NLCKADARD---------LGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP-  402 (450)
Q Consensus       337 ~~~l~~L~~L~L~~n----~l~~~~~~~---------l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~-  402 (450)
                        ++++|+.|.+...    .+++.++..         ....+..++.++.+.+..+.+++.|...++       ..|+. 
T Consensus       319 --~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l-------~gc~~l  389 (482)
T KOG1947|consen  319 --NCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSL-------RGCPNL  389 (482)
T ss_pred             --hCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHh-------cCCccc
Confidence              3455444443333    244433211         122345677888888887777776654443       22332 


Q ss_pred             -------------cCEEEccCCC-CChhHHHHHHHHHhcCCCCCcEEECcCCCC
Q 013056          403 -------------LVELYLENCE-LSGRGVSQLLDTLSTLRRPPTSLSIADNNL  442 (450)
Q Consensus       403 -------------L~~L~L~~n~-l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l  442 (450)
                                   ++.|+++.|. .+..++......    ...++.+++.+...
T Consensus       390 ~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~----~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  390 TESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADS----CSNLKDLDLSGCRV  439 (482)
T ss_pred             chHHHHHhccCCccceEecccCccccccchHHHhhh----hhccccCCccCccc
Confidence                         4677777775 555554444433    12267777666543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.28  E-value=3.7e-08  Score=98.71  Aligned_cols=36  Identities=28%  Similarity=0.441  Sum_probs=24.1

Q ss_pred             cCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056          403 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  444 (450)
Q Consensus       403 L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~  444 (450)
                      |+.+++++|.+...     ...+..+ ..+..|++..|.+..
T Consensus       234 L~~l~l~~n~i~~~-----~~~~~~~-~~l~~l~~~~n~~~~  269 (414)
T KOG0531|consen  234 LRELYLSGNRISRS-----PEGLENL-KNLPVLDLSSNRISN  269 (414)
T ss_pred             HHHHhcccCccccc-----ccccccc-ccccccchhhccccc
Confidence            77888888887762     2334442 338888888887754

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.21  E-value=3.4e-06  Score=88.68  Aligned_cols=143  Identities=18%  Similarity=0.190  Sum_probs=101.1

Q ss_pred             CCCCCEEecCCCCC-ChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCC
Q 013056          276 GRSLCSLKLRHCHL-DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLC  354 (450)
Q Consensus       276 ~~~L~~L~Ls~n~l-~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~  354 (450)
                      -.+|++||+++... ...=+..+    -..+|+|+.|.+++-.+...          +...-+.++++|..||+++.+++
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~ki----g~~LPsL~sL~i~~~~~~~~----------dF~~lc~sFpNL~sLDIS~TnI~  186 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKI----GTMLPSLRSLVISGRQFDND----------DFSQLCASFPNLRSLDISGTNIS  186 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHH----hhhCcccceEEecCceecch----------hHHHHhhccCccceeecCCCCcc
Confidence            36899999999743 33233333    34489999999998776531          11222357799999999999999


Q ss_pred             hhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhH--HHHHHHHHhcCCCCC
Q 013056          355 KADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG--VSQLLDTLSTLRRPP  432 (450)
Q Consensus       355 ~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g--~~~l~~~l~~l~~~L  432 (450)
                      .     + .+++++++|+.|.+.+=.+.+      .+.+ ..+-.+++|+.||+|.-......  +....+.-..++ .|
T Consensus       187 n-----l-~GIS~LknLq~L~mrnLe~e~------~~~l-~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lp-eL  252 (699)
T KOG3665|consen  187 N-----L-SGISRLKNLQVLSMRNLEFES------YQDL-IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLP-EL  252 (699)
T ss_pred             C-----c-HHHhccccHHHHhccCCCCCc------hhhH-HHHhcccCCCeeeccccccccchHHHHHHHHhcccCc-cc
Confidence            6     4 778999999999998866655      1111 23456799999999998754433  444555555555 49


Q ss_pred             cEEECcCCCCCccc
Q 013056          433 TSLSIADNNLGRFC  446 (450)
Q Consensus       433 ~~L~L~~N~l~~~~  446 (450)
                      +.||.++..+.++.
T Consensus       253 rfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  253 RFLDCSGTDINEEI  266 (699)
T ss_pred             cEEecCCcchhHHH
Confidence            99999998887653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.11  E-value=5.7e-07  Score=72.87  Aligned_cols=137  Identities=20%  Similarity=0.225  Sum_probs=93.5

Q ss_pred             CCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChh
Q 013056          277 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKA  356 (450)
Q Consensus       277 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~  356 (450)
                      ..+..++|+.|.+.. .++.+ ..+. ....|...+|++|.+.+         +|..+..  ..+.+++|+|++|.|.+ 
T Consensus        27 kE~h~ldLssc~lm~-i~dav-y~l~-~~~el~~i~ls~N~fk~---------fp~kft~--kf~t~t~lNl~~neisd-   91 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMY-IADAV-YMLS-KGYELTKISLSDNGFKK---------FPKKFTI--KFPTATTLNLANNEISD-   91 (177)
T ss_pred             HHhhhcccccchhhH-HHHHH-HHHh-CCceEEEEecccchhhh---------CCHHHhh--ccchhhhhhcchhhhhh-
Confidence            457788999998854 34433 2222 24678888999998876         3343332  33688999999999997 


Q ss_pred             hHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 013056          357 DARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLS  436 (450)
Q Consensus       357 ~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~  436 (450)
                          +|+.+..++.|+.|+++.|.+..      .|   ..+..+.++-.|+.-+|.+.+..+..+-      +...-..+
T Consensus        92 ----vPeE~Aam~aLr~lNl~~N~l~~------~p---~vi~~L~~l~~Lds~~na~~eid~dl~~------s~~~al~~  152 (177)
T KOG4579|consen   92 ----VPEELAAMPALRSLNLRFNPLNA------EP---RVIAPLIKLDMLDSPENARAEIDVDLFY------SSLPALIK  152 (177)
T ss_pred             ----chHHHhhhHHhhhcccccCcccc------ch---HHHHHHHhHHHhcCCCCccccCcHHHhc------cccHHHHH
Confidence                89889999999999999999876      23   3344457888889888887764333221      12133345


Q ss_pred             CcCCCCCcccc
Q 013056          437 IADNNLGRFCA  447 (450)
Q Consensus       437 L~~N~l~~~~~  447 (450)
                      +.+++++++-+
T Consensus       153 lgnepl~~~~~  163 (177)
T KOG4579|consen  153 LGNEPLGDETK  163 (177)
T ss_pred             hcCCcccccCc
Confidence            56777777654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.01  E-value=5.8e-06  Score=54.11  Aligned_cols=37  Identities=41%  Similarity=0.672  Sum_probs=23.5

Q ss_pred             ceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCCh
Q 013056          342 SLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED  383 (450)
Q Consensus       342 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~  383 (450)
                      +|++|++++|+|++     ++..++++++|+.|++++|+|++
T Consensus         2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCCC
Confidence            56666666666665     56556667777777777776665

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.97  E-value=1.2e-06  Score=71.11  Aligned_cols=111  Identities=23%  Similarity=0.313  Sum_probs=87.1

Q ss_pred             CCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccc
Q 013056          245 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK  324 (450)
Q Consensus       245 ~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~  324 (450)
                      ..+..++|++|++...      ......+.....|+..+|++|.+.+ .++.+..    ..+.+++|+|++|.|.+    
T Consensus        27 kE~h~ldLssc~lm~i------~davy~l~~~~el~~i~ls~N~fk~-fp~kft~----kf~t~t~lNl~~neisd----   91 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYI------ADAVYMLSKGYELTKISLSDNGFKK-FPKKFTI----KFPTATTLNLANNEISD----   91 (177)
T ss_pred             HHhhhcccccchhhHH------HHHHHHHhCCceEEEEecccchhhh-CCHHHhh----ccchhhhhhcchhhhhh----
Confidence            4577889999987531      1345566677888889999998876 5555432    35689999999999997    


Q ss_pred             cCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCCh
Q 013056          325 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED  383 (450)
Q Consensus       325 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~  383 (450)
                           +|..+.   .++.|+.|+++.|.+..     .|+.+..+.+|-.||..+|.+..
T Consensus        92 -----vPeE~A---am~aLr~lNl~~N~l~~-----~p~vi~~L~~l~~Lds~~na~~e  137 (177)
T KOG4579|consen   92 -----VPEELA---AMPALRSLNLRFNPLNA-----EPRVIAPLIKLDMLDSPENARAE  137 (177)
T ss_pred             -----chHHHh---hhHHhhhcccccCcccc-----chHHHHHHHhHHHhcCCCCcccc
Confidence                 677777   56899999999999985     78888888999999999998766

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.87  E-value=7.8e-06  Score=88.26  Aligned_cols=111  Identities=16%  Similarity=0.147  Sum_probs=77.2

Q ss_pred             cCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCc
Q 013056          183 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP  262 (450)
Q Consensus       183 ~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~  262 (450)
                      .+++|+.|-+..|..  ........++..++.|+.|||++|.=....|..+.+        +-+|++|+++.+.+..   
T Consensus       543 ~~~~L~tLll~~n~~--~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~--------Li~LryL~L~~t~I~~---  609 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSD--WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE--------LVHLRYLDLSDTGISH---  609 (889)
T ss_pred             CCCccceEEEeecch--hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh--------hhhhhcccccCCCccc---
Confidence            445788888888752  123333344678889999999988544456666655        5788899999988765   


Q ss_pred             hhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCC
Q 013056          263 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS  317 (450)
Q Consensus       263 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~  317 (450)
                            +|..++.++.|.+|++..+.-....+..+     ..+++|++|.+..-.
T Consensus       610 ------LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~-----~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  610 ------LPSGLGNLKKLIYLNLEVTGRLESIPGIL-----LELQSLRVLRLPRSA  653 (889)
T ss_pred             ------cchHHHHHHhhheeccccccccccccchh-----hhcccccEEEeeccc
Confidence                  78888888999999998875433222222     236889998887665

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.86  E-value=2e-05  Score=51.57  Aligned_cols=38  Identities=39%  Similarity=0.502  Sum_probs=27.6

Q ss_pred             CCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056          369 PNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  415 (450)
Q Consensus       369 ~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  415 (450)
                      ++|++|++++|+|++      +|   ..+..+++|+.|++++|+|++
T Consensus         1 ~~L~~L~l~~N~i~~------l~---~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQITD------LP---PELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-SS------HG---GHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCcc------cC---chHhCCCCCCEEEecCCCCCC
Confidence            468888888888887      54   347778888888888888776

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.61  E-value=0.00012  Score=71.48  Aligned_cols=139  Identities=16%  Similarity=0.268  Sum_probs=81.6

Q ss_pred             HhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCC-
Q 013056          209 IQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-  287 (450)
Q Consensus       209 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-  287 (450)
                      +..+.+++.|++++|.|+...         ..   -.+|++|.+++|.-..        .++..+  .++|++|++++| 
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP---------~L---P~sLtsL~Lsnc~nLt--------sLP~~L--P~nLe~L~Ls~Cs  105 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLP---------VL---PNELTEITIENCNNLT--------TLPGSI--PEGLEKLTVCHCP  105 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccC---------CC---CCCCcEEEccCCCCcc--------cCCchh--hhhhhheEccCcc
Confidence            445688999999999777432         11   3568999998764322        122222  157889999888 


Q ss_pred             CCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCC-CChhhHHHHHHHhh
Q 013056          288 HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNN-LCKADARDLGSALV  366 (450)
Q Consensus       288 ~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~~l~  366 (450)
                      .+..     +       ..+|+.|+++.+.....             ..+.  ++|+.|.+.+++ ....   .++..+ 
T Consensus       106 ~L~s-----L-------P~sLe~L~L~~n~~~~L-------------~~LP--ssLk~L~I~~~n~~~~~---~lp~~L-  154 (426)
T PRK15386        106 EISG-----L-------PESVRSLEIKGSATDSI-------------KNVP--NGLTSLSINSYNPENQA---RIDNLI-  154 (426)
T ss_pred             cccc-----c-------ccccceEEeCCCCCccc-------------ccCc--chHhheecccccccccc---cccccc-
Confidence            4432     1       35688888876654421             1111  456677765432 1110   112111 


Q ss_pred             cCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCC
Q 013056          367 HIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE  412 (450)
Q Consensus       367 ~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~  412 (450)
                       .++|++|++++|....      .|   ..+.  .+|+.|+++.|.
T Consensus       155 -PsSLk~L~Is~c~~i~------LP---~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        155 -SPSLKTLSLTGCSNII------LP---EKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             -CCcccEEEecCCCccc------Cc---cccc--ccCcEEEecccc
Confidence             1579999999887543      33   2233  688999988763

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.58  E-value=4.5e-05  Score=82.50  Aligned_cols=152  Identities=20%  Similarity=0.121  Sum_probs=85.9

Q ss_pred             CCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCC--CChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCc
Q 013056          185 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK--LSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP  262 (450)
Q Consensus       185 ~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~  262 (450)
                      ...+...+-+|.+.....      ...++.|++|-+..|.  +.......+..        ++.|..|+|++|.-..   
T Consensus       523 ~~~rr~s~~~~~~~~~~~------~~~~~~L~tLll~~n~~~l~~is~~ff~~--------m~~LrVLDLs~~~~l~---  585 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAG------SSENPKLRTLLLQRNSDWLLEISGEFFRS--------LPLLRVLDLSGNSSLS---  585 (889)
T ss_pred             hheeEEEEeccchhhccC------CCCCCccceEEEeecchhhhhcCHHHHhh--------CcceEEEECCCCCccC---
Confidence            445556665555332222      2345567777777775  33222222222        5778888888765433   


Q ss_pred             hhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCc
Q 013056          263 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS  342 (450)
Q Consensus       263 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~  342 (450)
                           .+|..++.+-+|++|+++++.+.. .|..+.     ++..|.+|++..+.-....+        ..+.   .+++
T Consensus       586 -----~LP~~I~~Li~LryL~L~~t~I~~-LP~~l~-----~Lk~L~~Lnl~~~~~l~~~~--------~i~~---~L~~  643 (889)
T KOG4658|consen  586 -----KLPSSIGELVHLRYLDLSDTGISH-LPSGLG-----NLKKLIYLNLEVTGRLESIP--------GILL---ELQS  643 (889)
T ss_pred             -----cCChHHhhhhhhhcccccCCCccc-cchHHH-----HHHhhheecccccccccccc--------chhh---hccc
Confidence                 577777777888888888887764 565553     35778888877765332111        2222   4577


Q ss_pred             eeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecC
Q 013056          343 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDIS  377 (450)
Q Consensus       343 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls  377 (450)
                      |++|.+..-......  ..-..+..+.+|+.+...
T Consensus       644 Lr~L~l~~s~~~~~~--~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  644 LRVLRLPRSALSNDK--LLLKELENLEHLENLSIT  676 (889)
T ss_pred             ccEEEeeccccccch--hhHHhhhcccchhhheee
Confidence            777777665422211  233334555666655554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.45  E-value=1.8e-05  Score=71.73  Aligned_cols=106  Identities=23%  Similarity=0.212  Sum_probs=74.8

Q ss_pred             CCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCCh
Q 013056          276 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCK  355 (450)
Q Consensus       276 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~  355 (450)
                      +.+.+.|+..++.+++..   ||+    .|+.|++|.||-|.|+.             +..+..|++|+.|.|+.|.|.+
T Consensus        18 l~~vkKLNcwg~~L~DIs---ic~----kMp~lEVLsLSvNkIss-------------L~pl~rCtrLkElYLRkN~I~s   77 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS---ICE----KMPLLEVLSLSVNKISS-------------LAPLQRCTRLKELYLRKNCIES   77 (388)
T ss_pred             HHHhhhhcccCCCccHHH---HHH----hcccceeEEeecccccc-------------chhHHHHHHHHHHHHHhccccc
Confidence            457788999999998742   343    37999999999999875             2344478899999999999886


Q ss_pred             hhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEE
Q 013056          356 ADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELY  407 (450)
Q Consensus       356 ~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~  407 (450)
                      -+  . -.-+.++|+|++|-|..|.-..++...-=.   ..+.-+++|+.||
T Consensus        78 ld--E-L~YLknlpsLr~LWL~ENPCc~~ag~nYR~---~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   78 LD--E-LEYLKNLPSLRTLWLDENPCCGEAGQNYRR---KVLRVLPNLKKLD  123 (388)
T ss_pred             HH--H-HHHHhcCchhhhHhhccCCcccccchhHHH---HHHHHcccchhcc
Confidence            32  1 234678899999999998765443222111   2345558888886

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.34  E-value=0.00029  Score=61.24  Aligned_cols=108  Identities=24%  Similarity=0.241  Sum_probs=51.2

Q ss_pred             CCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhh
Q 013056          278 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKAD  357 (450)
Q Consensus       278 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~  357 (450)
                      +...+||++|.+....       .+..++.|.+|.|++|+|+...+         .+..  .+++|+.|.|.+|+|..-|
T Consensus        43 ~~d~iDLtdNdl~~l~-------~lp~l~rL~tLll~nNrIt~I~p---------~L~~--~~p~l~~L~LtnNsi~~l~  104 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLD-------NLPHLPRLHTLLLNNNRITRIDP---------DLDT--FLPNLKTLILTNNSIQELG  104 (233)
T ss_pred             ccceecccccchhhcc-------cCCCccccceEEecCCcceeecc---------chhh--hccccceEEecCcchhhhh
Confidence            4555666666543311       11234556666666666654222         1221  2255666666666655422


Q ss_pred             HHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCC
Q 013056          358 ARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENC  411 (450)
Q Consensus       358 ~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n  411 (450)
                        .+ .-+..+|.|+.|.+-+|.+++..-.-+     -.+..+++|+.||...-
T Consensus       105 --dl-~pLa~~p~L~~Ltll~Npv~~k~~YR~-----yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  105 --DL-DPLASCPKLEYLTLLGNPVEHKKNYRL-----YVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             --hc-chhccCCccceeeecCCchhcccCcee-----EEEEecCcceEeehhhh
Confidence              11 124455666666666666554211111     12445566666665544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.28  E-value=0.00043  Score=67.68  Aligned_cols=141  Identities=18%  Similarity=0.179  Sum_probs=86.8

Q ss_pred             HhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCC-CCChhHHHHHHHHHhccccCCCCeeEEEcCCC-C
Q 013056          179 CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLCSKRKRIHKIENLSIDIS-S  256 (450)
Q Consensus       179 ~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n-~  256 (450)
                      ..+..+.+++.|++++|.+.... .       -..+|++|++++| .++ ..+..+          ..+|++|++++| .
T Consensus        46 ~r~~~~~~l~~L~Is~c~L~sLP-~-------LP~sLtsL~Lsnc~nLt-sLP~~L----------P~nLe~L~Ls~Cs~  106 (426)
T PRK15386         46 PQIEEARASGRLYIKDCDIESLP-V-------LPNELTEITIENCNNLT-TLPGSI----------PEGLEKLTVCHCPE  106 (426)
T ss_pred             HHHHHhcCCCEEEeCCCCCcccC-C-------CCCCCcEEEccCCCCcc-cCCchh----------hhhhhheEccCccc
Confidence            44556799999999999754432 1       2247999999987 432 222222          257899999998 4


Q ss_pred             CCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhC
Q 013056          257 FIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA  336 (450)
Q Consensus       257 i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~  336 (450)
                      +..         ++      .+|+.|+++.+....  ...+       .++|+.|.+.+++-....      .++..++ 
T Consensus       107 L~s---------LP------~sLe~L~L~~n~~~~--L~~L-------PssLk~L~I~~~n~~~~~------~lp~~LP-  155 (426)
T PRK15386        107 ISG---------LP------ESVRSLEIKGSATDS--IKNV-------PNGLTSLSINSYNPENQA------RIDNLIS-  155 (426)
T ss_pred             ccc---------cc------cccceEEeCCCCCcc--cccC-------cchHhheecccccccccc------ccccccC-
Confidence            322         22      468899998776543  1111       356788887543311000      0112222 


Q ss_pred             CCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCC
Q 013056          337 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNT  380 (450)
Q Consensus       337 ~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~  380 (450)
                          ++|++|++++|....     +|..+.  .+|+.|+++.|.
T Consensus       156 ----sSLk~L~Is~c~~i~-----LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        156 ----PSLKTLSLTGCSNII-----LPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             ----CcccEEEecCCCccc-----Cccccc--ccCcEEEecccc
Confidence                689999999887553     444333  588999988764

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.24  E-value=8.8e-05  Score=66.96  Aligned_cols=88  Identities=26%  Similarity=0.362  Sum_probs=52.9

Q ss_pred             CCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhh
Q 013056          306 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDG  385 (450)
Q Consensus       306 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g  385 (450)
                      ..|+.|.+.+..++.             +..+..+++|++|.++.|.....+  .+......+|+|++|++++|+|.+  
T Consensus        43 ~~le~ls~~n~gltt-------------~~~~P~Lp~LkkL~lsdn~~~~~~--~l~vl~e~~P~l~~l~ls~Nki~~--  105 (260)
T KOG2739|consen   43 VELELLSVINVGLTT-------------LTNFPKLPKLKKLELSDNYRRVSG--GLEVLAEKAPNLKVLNLSGNKIKD--  105 (260)
T ss_pred             cchhhhhhhccceee-------------cccCCCcchhhhhcccCCcccccc--cceehhhhCCceeEEeecCCcccc--
Confidence            445555555555442             233445678888888888332211  244444556888888888888776  


Q ss_pred             HHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056          386 IRSLIPYFVQASERCNPLVELYLENCELSG  415 (450)
Q Consensus       386 ~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  415 (450)
                      +..+     ..+..+.+|..|++.+|..+.
T Consensus       106 lstl-----~pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  106 LSTL-----RPLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             cccc-----chhhhhcchhhhhcccCCccc
Confidence            2222     235555778888888887544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.06  E-value=5.6e-05  Score=68.69  Aligned_cols=105  Identities=19%  Similarity=0.244  Sum_probs=73.1

Q ss_pred             CCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChh
Q 013056          305 SSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDD  384 (450)
Q Consensus       305 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~  384 (450)
                      +.+.+.|++.+|.+++             ++-+..++.|+.|.|+-|+|+.     +. .+..|++|++|.|..|.|.+ 
T Consensus        18 l~~vkKLNcwg~~L~D-------------Isic~kMp~lEVLsLSvNkIss-----L~-pl~rCtrLkElYLRkN~I~s-   77 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD-------------ISICEKMPLLEVLSLSVNKISS-----LA-PLQRCTRLKELYLRKNCIES-   77 (388)
T ss_pred             HHHhhhhcccCCCccH-------------HHHHHhcccceeEEeecccccc-----ch-hHHHHHHHHHHHHHhccccc-
Confidence            4567888888888886             2333467888999999998885     43 37788889999999998877 


Q ss_pred             hHHHHHHHHHhhcCCCCCcCEEEccCCCC-ChhHHHHHHHHHhcCCCCCcEEE
Q 013056          385 GIRSLIPYFVQASERCNPLVELYLENCEL-SGRGVSQLLDTLSTLRRPPTSLS  436 (450)
Q Consensus       385 g~~~l~~~l~~~l~~~~~L~~L~L~~n~l-~~~g~~~l~~~l~~l~~~L~~L~  436 (450)
                           +..+ .-+..+++|+.|.|..|.= ...|-..=...+..++. |+.||
T Consensus        78 -----ldEL-~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPn-LkKLD  123 (388)
T KOG2123|consen   78 -----LDEL-EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPN-LKKLD  123 (388)
T ss_pred             -----HHHH-HHHhcCchhhhHhhccCCcccccchhHHHHHHHHccc-chhcc
Confidence                 3222 3467778888888888873 23344434445555443 77776

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.87  E-value=0.00035  Score=63.19  Aligned_cols=65  Identities=25%  Similarity=0.269  Sum_probs=36.5

Q ss_pred             CCCCCCEEecCCC--CCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCC
Q 013056          275 SGRSLCSLKLRHC--HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNN  352 (450)
Q Consensus       275 ~~~~L~~L~Ls~n--~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~  352 (450)
                      .+++|+.|.++.|  ++.. +...+++    .+++|++|++++|.|...          ..+..++.+.+|..|++..|.
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~-~l~vl~e----~~P~l~~l~ls~Nki~~l----------stl~pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSG-GLEVLAE----KAPNLKVLNLSGNKIKDL----------STLRPLKELENLKSLDLFNCS  127 (260)
T ss_pred             CcchhhhhcccCCcccccc-cceehhh----hCCceeEEeecCCccccc----------cccchhhhhcchhhhhcccCC
Confidence            4567777777777  4433 3333333    246777777777766631          333333445666666666665


Q ss_pred             CC
Q 013056          353 LC  354 (450)
Q Consensus       353 l~  354 (450)
                      .+
T Consensus       128 ~~  129 (260)
T KOG2739|consen  128 VT  129 (260)
T ss_pred             cc
Confidence            44

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.84  E-value=0.00084  Score=58.44  Aligned_cols=128  Identities=23%  Similarity=0.278  Sum_probs=89.9

Q ss_pred             CCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhH
Q 013056          279 LCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADA  358 (450)
Q Consensus       279 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~  358 (450)
                      =++++|.+.++....-  +    -....+...+||++|.+..             +..+.+++.|.+|.|.+|+|+.   
T Consensus        21 e~e~~LR~lkip~ien--l----g~~~d~~d~iDLtdNdl~~-------------l~~lp~l~rL~tLll~nNrIt~---   78 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIEN--L----GATLDQFDAIDLTDNDLRK-------------LDNLPHLPRLHTLLLNNNRITR---   78 (233)
T ss_pred             ccccccccccccchhh--c----cccccccceecccccchhh-------------cccCCCccccceEEecCCccee---
Confidence            4788888888865322  2    2235688999999999874             2445578999999999999997   


Q ss_pred             HHHHHHhh-cCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEEC
Q 013056          359 RDLGSALV-HIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSI  437 (450)
Q Consensus       359 ~~l~~~l~-~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L  437 (450)
                        |.+.+. -+++|..|.|.+|+|..-|  .+     ..+..|++|++|.+-+|+++...-... -.+.++++ |+.||.
T Consensus        79 --I~p~L~~~~p~l~~L~LtnNsi~~l~--dl-----~pLa~~p~L~~Ltll~Npv~~k~~YR~-yvl~klp~-l~~LDF  147 (233)
T KOG1644|consen   79 --IDPDLDTFLPNLKTLILTNNSIQELG--DL-----DPLASCPKLEYLTLLGNPVEHKKNYRL-YVLYKLPS-LRTLDF  147 (233)
T ss_pred             --eccchhhhccccceEEecCcchhhhh--hc-----chhccCCccceeeecCCchhcccCcee-EEEEecCc-ceEeeh
Confidence              555555 4678999999999885511  11     346778999999999999876321111 12445443 888887


Q ss_pred             cC
Q 013056          438 AD  439 (450)
Q Consensus       438 ~~  439 (450)
                      ++
T Consensus       148 ~k  149 (233)
T KOG1644|consen  148 QK  149 (233)
T ss_pred             hh
Confidence            64

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=96.83  E-value=0.0019  Score=63.05  Aligned_cols=234  Identities=15%  Similarity=0.008  Sum_probs=119.9

Q ss_pred             CCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCCh-hHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCch
Q 013056          185 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSP-SFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS  263 (450)
Q Consensus       185 ~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~  263 (450)
                      ..+.+++|+.|.....++.+....... ..++.++.+...+.- .....++.    -  ..++++..+++.|........
T Consensus       214 ~~lteldls~n~~Kddip~~~n~~a~~-~vl~~ld~s~tgirlD~l~~~l~~----g--~~tkl~~~kls~ng~s~skg~  286 (553)
T KOG4242|consen  214 LWLTELDLSTNGGKDDIPRTLNKKAGT-LVLFKLDRSTTGIRLDLLTSPLAA----G--RTTKLTFGKLSRNGTSPSKGE  286 (553)
T ss_pred             ccccccccccCCCCccchhHHHHhhhh-hhhhcccccccccchhhccccccc----c--cccccchhhhccCCCCccccc
Confidence            456777888777666666665555543 356777777665432 22222211    0  035677778877766554444


Q ss_pred             hhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCC-CcEEeccCCCCCCcccccCcccHHHhhhCCCCCCc
Q 013056          264 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSS-LSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS  342 (450)
Q Consensus       264 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~-L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~  342 (450)
                      .+.+..-+.+..-+++ +|++..+....+-+..+.-++..+-.. =-++|+..|...+.          ..+.+..+=..
T Consensus       287 Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a----------~vleaci~g~R  355 (553)
T KOG4242|consen  287 EGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERA----------EVLEACIFGQR  355 (553)
T ss_pred             ccccccccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhcccccc----------chhhcccccee
Confidence            4444555666666777 888877777665555443332222111 13445555544431          11121112244


Q ss_pred             eeEEEccCCCCChhhHHHHHHHhhcCCCCCEEec---------------------------------CCCCCChhhHHHH
Q 013056          343 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDI---------------------------------SDNTIEDDGIRSL  389 (450)
Q Consensus       343 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L---------------------------------s~N~l~~~g~~~l  389 (450)
                      +++|..+.|++..+|....  .+...++.+.+++                                 +.|.+... ....
T Consensus       356 ~q~l~~rdnnldgeg~~vg--k~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~-l~s~  432 (553)
T KOG4242|consen  356 VQVLLQRDNNLDGEGGAVG--KRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAG-LESA  432 (553)
T ss_pred             eeEeecccccccccccccc--ceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCccccc-HHHH
Confidence            6666666666665553322  2334444444444                                 44443321 1111


Q ss_pred             HHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056          390 IPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  444 (450)
Q Consensus       390 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~  444 (450)
                      +    ..+...+.+..|++++|..++.|..-++..+.. +.+++.+..+.|..+.
T Consensus       433 i----n~l~stqtl~kldisgn~mgd~gap~lpkalq~-n~rlr~ipds~n~p~~  482 (553)
T KOG4242|consen  433 I----NKLLSTQTLAKLDISGNGMGDGGAPPLPKALQS-NCRLRPIPDSLNLPED  482 (553)
T ss_pred             H----HhhccCcccccccccCCCcccCCCCcCccccCC-CCccCCCCCCCCCccc
Confidence            1    333444556666666666666555555555555 4445555555555443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.78  E-value=0.00048  Score=59.91  Aligned_cols=53  Identities=30%  Similarity=0.387  Sum_probs=26.0

Q ss_pred             hhCCCCCCceeEEEccCC-CCChhhHHHHHHHhhcCCCCCEEecCCC-CCChhhHHHH
Q 013056          334 LGAGKSLQSLRLLNLRGN-NLCKADARDLGSALVHIPNLEILDISDN-TIEDDGIRSL  389 (450)
Q Consensus       334 l~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~N-~l~~~g~~~l  389 (450)
                      +.++..++.++.|.+.+| .+.+.+.+.+..   -.++|+.|+|++| +||+.|+..|
T Consensus       118 le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~---~~~~L~~L~lsgC~rIT~~GL~~L  172 (221)
T KOG3864|consen  118 LEHLRDLRSIKSLSLANCKYFDDWCLERLGG---LAPSLQDLDLSGCPRITDGGLACL  172 (221)
T ss_pred             HHHHhccchhhhheeccccchhhHHHHHhcc---cccchheeeccCCCeechhHHHHH
Confidence            333444455555555555 444444444333   3345556666544 4555555444

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=96.73  E-value=0.0024  Score=37.10  Aligned_cols=22  Identities=45%  Similarity=0.821  Sum_probs=12.4

Q ss_pred             CCCCEEecCCCCCChhhHHHHH
Q 013056          369 PNLEILDISDNTIEDDGIRSLI  390 (450)
Q Consensus       369 ~~L~~L~Ls~N~l~~~g~~~l~  390 (450)
                      ++|++|||++|.|+++|+.+++
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~   23 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALA   23 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHH
Confidence            3455555555555555555554

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=96.57  E-value=0.0038  Score=36.30  Aligned_cols=26  Identities=35%  Similarity=0.451  Sum_probs=23.7

Q ss_pred             CCcCEEEccCCCCChhHHHHHHHHHh
Q 013056          401 NPLVELYLENCELSGRGVSQLLDTLS  426 (450)
Q Consensus       401 ~~L~~L~L~~n~l~~~g~~~l~~~l~  426 (450)
                      ++|++|+|++|.|++.|+..+++.+.
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~~L~   27 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAEALK   27 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHHHhc
Confidence            68999999999999999999988774

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=96.42  E-value=0.002  Score=35.92  Aligned_cols=21  Identities=57%  Similarity=0.953  Sum_probs=10.9

Q ss_pred             CCCCEEecCCCCCChhhHHHH
Q 013056          369 PNLEILDISDNTIEDDGIRSL  389 (450)
Q Consensus       369 ~~L~~L~Ls~N~l~~~g~~~l  389 (450)
                      ++|++|+|++|+|+++|+.++
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            455566666666665555554

...

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=96.13  E-value=0.0051  Score=40.74  Aligned_cols=36  Identities=19%  Similarity=0.431  Sum_probs=27.2

Q ss_pred             hccCchHHHHHHHhcCChhhhhhhhhcCCCCCCCCCcccccccccccccCCchHHHHHHHh
Q 013056           20 VYELPADLFDILLTCLPPLALQKLQTKMDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFK   80 (450)
Q Consensus        20 ~~~lp~~ll~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~r~~~~~~~W~~l~~   80 (450)
                      |.+||.|++..||++||+.++                         .++...++.|.+.+.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl-------------------------~~~~~vcr~w~~~~~   36 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDL-------------------------LRLSLVCRRWRRIAN   36 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHH-------------------------HHHTTSSHHHHHHHT
T ss_pred             ChHhHHHHHHHHHhcCCHHHH-------------------------HHHHHHHHHHHHHHC
Confidence            457999999999999998777                         445667788887773

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=95.90  E-value=0.0054  Score=34.14  Aligned_cols=23  Identities=30%  Similarity=0.346  Sum_probs=17.3

Q ss_pred             CCCcCEEEccCCCCChhHHHHHH
Q 013056          400 CNPLVELYLENCELSGRGVSQLL  422 (450)
Q Consensus       400 ~~~L~~L~L~~n~l~~~g~~~l~  422 (450)
                      +++|++|+|++|.|++.|+..++
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHhC
Confidence            47899999999999999888765

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.66  E-value=0.016  Score=50.58  Aligned_cols=83  Identities=12%  Similarity=0.115  Sum_probs=45.4

Q ss_pred             CccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCC-CCChhHHHHHHHHHhccccCCCCeeEEEcCCC-CCCCCCch
Q 013056          186 KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLCSKRKRIHKIENLSIDIS-SFIENCPS  263 (450)
Q Consensus       186 ~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n-~i~~~~~~  263 (450)
                      .++.++-++..+    .......+..++.++.|.+.+| .+.+.+.+.+...       ..+|+.|+++.| +||+    
T Consensus       102 ~IeaVDAsds~I----~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~-------~~~L~~L~lsgC~rIT~----  166 (221)
T KOG3864|consen  102 KIEAVDASDSSI----MYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGL-------APSLQDLDLSGCPRITD----  166 (221)
T ss_pred             eEEEEecCCchH----HHHHHHHHhccchhhhheeccccchhhHHHHHhccc-------ccchheeeccCCCeech----
Confidence            355555555542    1111122356666666777766 5666666655541       466666666655 4555    


Q ss_pred             hhHHHHHHhhcCCCCCCEEecCCC
Q 013056          264 SVVVELVSFLSSGRSLCSLKLRHC  287 (450)
Q Consensus       264 ~~~~~l~~~l~~~~~L~~L~Ls~n  287 (450)
                          .-...+..+++|+.|.+.+-
T Consensus       167 ----~GL~~L~~lknLr~L~l~~l  186 (221)
T KOG3864|consen  167 ----GGLACLLKLKNLRRLHLYDL  186 (221)
T ss_pred             ----hHHHHHHHhhhhHHHHhcCc
Confidence                33444555666666666543

>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]

Probab=95.32  E-value=0.025  Score=53.11  Aligned_cols=50  Identities=20%  Similarity=0.255  Sum_probs=25.3

Q ss_pred             CceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHH
Q 013056          341 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLI  390 (450)
Q Consensus       341 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~  390 (450)
                      +..+...+.+-+..+.-+..++..+..++.|++|++.+|.|+..|+.++.
T Consensus       227 t~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~  276 (353)
T KOG3735|consen  227 THVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALL  276 (353)
T ss_pred             chhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHH
Confidence            33444444444444444444445555555555555555555555555554

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=94.18  E-value=0.051  Score=53.41  Aligned_cols=209  Identities=16%  Similarity=0.099  Sum_probs=114.0

Q ss_pred             hcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCC
Q 013056          210 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL  289 (450)
Q Consensus       210 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  289 (450)
                      ...+.+++++++.|.+.+..+..+...          .--++++.|..++...+    .+. .=..-..+.+++|+.|..
T Consensus       162 rpnpr~r~~dls~npi~dkvpihl~~p----------~~pl~lr~c~lsskfis----~l~-~qsg~~~lteldls~n~~  226 (553)
T KOG4242|consen  162 RPNPRARQHDLSPNPIGDKVPIHLPQP----------GNPLSLRVCELSSKFIS----KLL-IQSGRLWLTELDLSTNGG  226 (553)
T ss_pred             CCcchhhhhccCCCcccccCCccccCC----------CCccchhhhhhhhhHHH----Hhh-hhhccccccccccccCCC
Confidence            344567778888888877776665431          11256666666652222    111 111235678888888887


Q ss_pred             ChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCCh----hhHHHHHHHh
Q 013056          290 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCK----ADARDLGSAL  365 (450)
Q Consensus       290 ~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~~l  365 (450)
                      .+..+..+...  .....++.++.+...+.-   +..+    ..+. ...-+.+...+++.|....    +|...--+.+
T Consensus       227 Kddip~~~n~~--a~~~vl~~ld~s~tgirl---D~l~----~~l~-~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~f  296 (553)
T KOG4242|consen  227 KDDIPRTLNKK--AGTLVLFKLDRSTTGIRL---DLLT----SPLA-AGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTF  296 (553)
T ss_pred             CccchhHHHHh--hhhhhhhcccccccccch---hhcc----cccc-cccccccchhhhccCCCCccccccccccccccc
Confidence            77666654322  223567777777776542   0000    1111 1123567777777775432    2222233334


Q ss_pred             hcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056          366 VHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF  445 (450)
Q Consensus       366 ~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~  445 (450)
                      ..-+++ +|++......++-.+.++-.  .+-..-+.=-++++..|.....-   ..++... ...+++|++..|.+.++
T Consensus       297 S~~~sg-hln~~~~~~psE~lks~LLg--la~ne~t~g~rldl~~cp~~~a~---vleaci~-g~R~q~l~~rdnnldge  369 (553)
T KOG4242|consen  297 SPDPSG-HLNSRPRYTPSEKLKSMLLG--LAENEATLGARLDLRRCPLERAE---VLEACIF-GQRVQVLLQRDNNLDGE  369 (553)
T ss_pred             CcCccc-ccccccccCchhhhhhhhcc--cccccccccccCChhhccccccc---hhhcccc-ceeeeEeeccccccccc
Confidence            445677 88888888777766655421  11111122236677777765531   2233333 33488888888888888


Q ss_pred             cccCC
Q 013056          446 CANSG  450 (450)
Q Consensus       446 ~~~~~  450 (450)
                      +...|
T Consensus       370 g~~vg  374 (553)
T KOG4242|consen  370 GGAVG  374 (553)
T ss_pred             ccccc
Confidence            77654

>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]

Probab=93.95  E-value=0.18  Score=47.60  Aligned_cols=101  Identities=14%  Similarity=0.191  Sum_probs=78.3

Q ss_pred             HHHHHHHhcCCCccEEEccCC-CCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCE
Q 013056          203 ALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCS  281 (450)
Q Consensus       203 ~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~  281 (450)
                      .....+-.+-+.|+..+++++ .|.......++.++...    ...+.+.+.+.+..+    ..+-.++..+.-+++|++
T Consensus       188 ~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~n----t~vk~Fsla~tr~~d----~vA~a~a~ml~~n~sl~s  259 (353)
T KOG3735|consen  188 SSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNN----THVKKFSLANTRSSD----PVAFAIAEMLKENKSLTS  259 (353)
T ss_pred             HHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcC----chhhhhhhhcccCCc----hhHHHHHHHHhhcchhhh
Confidence            334444567789999999988 78888888888888874    778888888877766    333367777788899999


Q ss_pred             EecCCCCCChhHHHHHHHHHhhCCCCCcEEe
Q 013056          282 LKLRHCHLDRDFGRMVFSSLLEASSSLSILD  312 (450)
Q Consensus       282 L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~  312 (450)
                      |++.+|.|++.+...+..+|..+ .+|.++.
T Consensus       260 lnvesnFItg~gi~a~~~al~~n-~tl~el~  289 (353)
T KOG3735|consen  260 LNVESNFITGLGIMALLRALQSN-KSLTELK  289 (353)
T ss_pred             eeccccccccHHHHHHHHHHhcc-chhhHhh
Confidence            99999999999998888887665 5555553

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=93.74  E-value=0.074  Score=30.12  Aligned_cols=21  Identities=33%  Similarity=0.607  Sum_probs=10.6

Q ss_pred             CCcCEEEccCCC-CChhHHHHH
Q 013056          401 NPLVELYLENCE-LSGRGVSQL  421 (450)
Q Consensus       401 ~~L~~L~L~~n~-l~~~g~~~l  421 (450)
                      ++|++|+|++|. ||+.|+..+
T Consensus         2 ~~L~~L~l~~C~~itD~gl~~l   23 (26)
T smart00367        2 PNLRELDLSGCTNITDEGLQAL   23 (26)
T ss_pred             CCCCEeCCCCCCCcCHHHHHHH
Confidence            445555555553 555554444

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=93.68  E-value=0.062  Score=30.44  Aligned_cols=21  Identities=48%  Similarity=0.839  Sum_probs=10.6

Q ss_pred             CCCCEEecCCC-CCChhhHHHH
Q 013056          369 PNLEILDISDN-TIEDDGIRSL  389 (450)
Q Consensus       369 ~~L~~L~Ls~N-~l~~~g~~~l  389 (450)
                      ++|++|+|+++ .|+|.|+.++
T Consensus         2 ~~L~~L~l~~C~~itD~gl~~l   23 (26)
T smart00367        2 PNLRELDLSGCTNITDEGLQAL   23 (26)
T ss_pred             CCCCEeCCCCCCCcCHHHHHHH
Confidence            44555555554 3555555444

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=93.48  E-value=0.068  Score=35.30  Aligned_cols=38  Identities=24%  Similarity=0.476  Sum_probs=27.1

Q ss_pred             hhhccCchHHHHHHHhcCChhhhhhhhhcCCCCCCCCCcccccccccccccCCchHHHHHHHh
Q 013056           18 PYVYELPADLFDILLTCLPPLALQKLQTKMDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFK   80 (450)
Q Consensus        18 ~~~~~lp~~ll~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~r~~~~~~~W~~l~~   80 (450)
                      +++.+||.|++..|+.+|++..+.                         +....++.|+++++
T Consensus         1 ~~~~~LP~~il~~Il~~l~~~~~~-------------------------~l~~vsk~~~~~~~   38 (48)
T PF00646_consen    1 FPLSDLPDEILQEILSYLDPKDLL-------------------------RLSLVSKRWRSLVD   38 (48)
T ss_dssp             -HHHHS-HHHHHHHHHTS-HHHHH-------------------------HHCTT-HHHHHHHT
T ss_pred             CCHHHCCHHHHHHHHHHCcHHHHH-------------------------HHHHHhhHHHHHHc
Confidence            467899999999999999977763                         44566778877775

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.75  E-value=0.087  Score=26.54  Aligned_cols=11  Identities=45%  Similarity=0.791  Sum_probs=3.3

Q ss_pred             CCEEecCCCCC
Q 013056          371 LEILDISDNTI  381 (450)
Q Consensus       371 L~~L~Ls~N~l  381 (450)
                      |+.|+|++|+|
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            34444444433

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=90.19  E-value=0.12  Score=27.99  Aligned_cols=15  Identities=27%  Similarity=0.248  Sum_probs=9.6

Q ss_pred             CcEEECcCCCCCcccc
Q 013056          432 PTSLSIADNNLGRFCA  447 (450)
Q Consensus       432 L~~L~L~~N~l~~~~~  447 (450)
                      |++|||++|+|+ .+|
T Consensus         2 L~~Ldls~n~l~-~ip   16 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIP   16 (22)
T ss_dssp             ESEEEETSSEES-EEG
T ss_pred             ccEEECCCCcCE-eCC
Confidence            666777777666 444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=88.13  E-value=0.42  Score=38.83  Aligned_cols=13  Identities=31%  Similarity=0.457  Sum_probs=6.0

Q ss_pred             hcCCCCCEEecCC
Q 013056          366 VHIPNLEILDISD  378 (450)
Q Consensus       366 ~~~~~L~~L~Ls~  378 (450)
                      ..+++|+.+++..
T Consensus        78 ~~~~~l~~i~~~~   90 (129)
T PF13306_consen   78 SNCTNLKNIDIPS   90 (129)
T ss_dssp             TT-TTECEEEETT
T ss_pred             cccccccccccCc
Confidence            3455555555544

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=87.33  E-value=0.36  Score=30.28  Aligned_cols=18  Identities=39%  Similarity=0.835  Sum_probs=16.0

Q ss_pred             CchHHHHHHHhcCChhhh
Q 013056           23 LPADLFDILLTCLPPLAL   40 (450)
Q Consensus        23 lp~~ll~~~~~~l~~~~~   40 (450)
                      ||.|++..|+++|++.++
T Consensus         1 lP~~ll~~I~~~l~~~d~   18 (41)
T smart00256        1 LPDEILEEILSKLPPKDL   18 (41)
T ss_pred             CCHHHHHHHHHcCCHHHH
Confidence            799999999999997666

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=85.07  E-value=0.94  Score=36.74  Aligned_cols=101  Identities=16%  Similarity=0.193  Sum_probs=40.6

Q ss_pred             CCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccc
Q 013056          244 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS  323 (450)
Q Consensus       244 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~  323 (450)
                      +.+|+.+.+.. .+..        .-...+.++++|+.+++..+ +...+.     ..+..+.+|+.+.+.. .+.... 
T Consensus        11 ~~~l~~i~~~~-~~~~--------I~~~~F~~~~~l~~i~~~~~-~~~i~~-----~~F~~~~~l~~i~~~~-~~~~i~-   73 (129)
T PF13306_consen   11 CSNLESITFPN-TIKK--------IGENAFSNCTSLKSINFPNN-LTSIGD-----NAFSNCKSLESITFPN-NLKSIG-   73 (129)
T ss_dssp             -TT--EEEETS-T--E--------E-TTTTTT-TT-SEEEESST-TSCE-T-----TTTTT-TT-EEEEETS-TT-EE--
T ss_pred             CCCCCEEEECC-CeeE--------eChhhccccccccccccccc-ccccce-----eeeecccccccccccc-cccccc-
Confidence            44677777654 2333        12234556667777777654 333111     1123445677777754 222110 


Q ss_pred             ccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHH-HhhcCCCCCEEecCC
Q 013056          324 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISD  378 (450)
Q Consensus       324 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~  378 (450)
                              .  ..+..+++|+.+++..+ +..     ++. .+.++ .|+.+.+..
T Consensus        74 --------~--~~F~~~~~l~~i~~~~~-~~~-----i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   74 --------D--NAFSNCTNLKNIDIPSN-ITE-----IGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             --------T--TTTTT-TTECEEEETTT--BE-----EHTTTTTT--T--EEE-TT
T ss_pred             --------c--ccccccccccccccCcc-ccE-----EchhhhcCC-CceEEEECC
Confidence                    1  23335567777777554 332     222 23344 667766654

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=84.63  E-value=1.4  Score=44.50  Aligned_cols=65  Identities=32%  Similarity=0.360  Sum_probs=31.2

Q ss_pred             CceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCC--CCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056          341 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN--TIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  415 (450)
Q Consensus       341 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N--~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  415 (450)
                      +.+..++|++|++..-.  .+.......|.|.+|+||+|  .+.+      .+.+ ..++ ...|++|-+.+|.+..
T Consensus       218 p~i~sl~lsnNrL~~Ld--~~sslsq~apklk~L~LS~N~~~~~~------~~el-~K~k-~l~Leel~l~GNPlc~  284 (585)
T KOG3763|consen  218 PEILSLSLSNNRLYHLD--ALSSLSQIAPKLKTLDLSHNHSKISS------ESEL-DKLK-GLPLEELVLEGNPLCT  284 (585)
T ss_pred             cceeeeecccchhhchh--hhhHHHHhcchhheeecccchhhhcc------hhhh-hhhc-CCCHHHeeecCCcccc
Confidence            45555556666554311  23333344566666666666  3333      1110 1111 1456667777776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	450
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-22
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-18
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-17
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-21
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-20
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-16
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	9e-19
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-13
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-10
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-12
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-09
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	1e-09
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	2e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	3e-08
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	3e-06
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-04

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 97.5 bits (243), Expect = 1e-22
 Identities = 54/289 (18%), Positives = 94/289 (32%), Gaps = 35/289 (12%)

Query: 169 LQNALCVEETCQLLRE-----SKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLH 222
           +   L +      + E       + SL L            L +       ++ SL    
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60

Query: 223 CKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV-VVELVSFLSSG-RSLC 280
             L     + + + L +    +  + NLS        N  S     ELV  L++   ++ 
Sbjct: 61  NSLGFKNSDELVQILAAIPANVTSL-NLS-------GNFLSYKSSDELVKTLAAIPFTIT 112

Query: 281 SLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSL 340
            L L               +     +S++ L+L GN +G       +S            
Sbjct: 113 VLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG------IKSSDELIQILAAIP 166

Query: 341 QSLRLLNLRGNNLCKADARDLGSALVHIP-NLEILDISDNTIEDDGIRSLIPYFVQASER 399
            ++  LNLRGNNL   +  +L   L  IP ++  LD+S N +       L          
Sbjct: 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAEL----AYIFSS 222

Query: 400 CNP-LVELYLENCELSGRGVSQL---LDTLSTLRRPPTSLSIADNNLGR 444
               +V L L    L G  +  L    D+L  L     ++ +  + +  
Sbjct: 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL----QTVYLDYDIVKN 267

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 84.0 bits (208), Expect = 7e-18
 Identities = 39/181 (21%), Positives = 67/181 (37%), Gaps = 12/181 (6%)

Query: 269 LVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRS 328
           +  F S    + SL L   +L       +  +     +S++ L+LSGNS+G       ++
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG------FKN 67

Query: 329 GPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIP-NLEILDISDNTIEDDGIR 387
                        ++  LNL GN L    + +L   L  IP  + +LD+  N        
Sbjct: 68  SDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS 127

Query: 388 SLIPYFVQASERCNP-LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC 446
                  QA       +  L L   +L  +   +L+  L+ +     SL++  NNL    
Sbjct: 128 EFK----QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183

Query: 447 A 447
            
Sbjct: 184 C 184

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 82.4 bits (204), Expect = 2e-17
 Identities = 42/266 (15%), Positives = 76/266 (28%), Gaps = 26/266 (9%)

Query: 185 SKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 243
             +  L L W  F  +      +       ++ SL      L     + + + L +    
Sbjct: 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN 168

Query: 244 IHKIENLSIDISSFIENCP--SSVVVELVSFLSSG-RSLCSLKLRHCHLDRDFGRMVFSS 300
           ++ + NL              S    EL  FL+S   S+ SL L    L       +   
Sbjct: 169 VNSL-NLR--------GNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI 219

Query: 301 LLEASSSLSILDLSGNSIGGWLSKYDRSGPLFS--LGAGKSLQSLRLLNLRGNNLCKADA 358
                + +  L+L  N +         S         + K LQ++ L      N+ K   
Sbjct: 220 FSSIPNHVVSLNLCLNCLH------GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC 273

Query: 359 RDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVE-LYLENCELSGRG 417
           + LG+A  +I  + ++D +   I       +           +   +   L N  L    
Sbjct: 274 KALGAAFPNIQKIILVDKNGKEIHPSHSIPIS----NLIRELSGKADVPSLLNQCLIFAQ 329

Query: 418 VSQLLDTLSTLRRPPTSLSIADNNLG 443
             Q       +             L 
Sbjct: 330 KHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 80.9 bits (200), Expect = 6e-17
 Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 12/164 (7%)

Query: 286 HCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRL 345
           +  L    G             ++ LDLS N++         S          +  S+  
Sbjct: 2   NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY------SISTVELIQAFANTPASVTS 55

Query: 346 LNLRGNNLCKADARDLGSALVHIP-NLEILDISDNTIEDDGIRSLIPYFVQASERCN-PL 403
           LNL GN+L   ++ +L   L  IP N+  L++S N +       L    V+        +
Sbjct: 56  LNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL----VKTLAAIPFTI 111

Query: 404 VELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 447
             L L   + S +  S+     S L    TSL++  N+LG   +
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS 155

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 95.8 bits (239), Expect = 1e-21
 Identities = 59/262 (22%), Positives = 95/262 (36%), Gaps = 27/262 (10%)

Query: 185 SKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 243
             +QSL ++     +     L  LL    +    +    C L+ +  + I  +L      
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLL----QQCQVVRLDDCGLTEARCKDISSALRVNPA- 57

Query: 244 IHKIENLSIDISSFIENCPSSVVVELVS--FLSSGRSLCSLKLRHCHLDRDFGRMVFSSL 301
              +  L++       N    V V  V     +    +  L L++C L    G  V SS 
Sbjct: 58  ---LAELNLR-----SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT-GAGCGVLSST 108

Query: 302 LEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDL 361
           L    +L  L LS N +G      D    L   G       L  L L   +L  A    L
Sbjct: 109 LRTLPTLQELHLSDNLLG------DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162

Query: 362 GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL 421
            S L   P+ + L +S+N I + G+R L      +  +   L  L LE+C ++      L
Sbjct: 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ---LEALKLESCGVTSDNCRDL 219

Query: 422 LDTLSTLRRPPTSLSIADNNLG 443
              +++       L++  N LG
Sbjct: 220 CGIVASKAS-LRELALGSNKLG 240

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 91.9 bits (229), Expect = 2e-20
 Identities = 56/273 (20%), Positives = 86/273 (31%), Gaps = 23/273 (8%)

Query: 179 CQLLRES--KLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICR 235
            Q L+    K+Q L L+           L   L     TL  L      L  + ++ +C 
Sbjct: 77  LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP-TLQELHLSDNLLGDAGLQLLCE 135

Query: 236 SLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGR 295
            L   +    ++E L ++  S            L S L +      L + +  ++    R
Sbjct: 136 GLLDPQC---RLEKLQLEYCSLSAAS----CEPLASVLRAKPDFKELTVSNNDINEAGVR 188

Query: 296 MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCK 355
           ++   L ++   L  L L    +         +          S  SLR L L  N L  
Sbjct: 189 VLCQGLKDSPCQLEALKLESCGVT------SDNCRDLCG-IVASKASLRELALGSNKLGD 241

Query: 356 ADARDLGSALVHI-PNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELS 414
               +L   L+H    L  L I +  I   G   L     +       L EL L   EL 
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL----CRVLRAKESLKELSLAGNELG 297

Query: 415 GRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 447
             G   L +TL        SL +   +    C 
Sbjct: 298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACC 330

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 90.8 bits (226), Expect = 6e-20
 Identities = 53/231 (22%), Positives = 87/231 (37%), Gaps = 23/231 (9%)

Query: 199 EHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFI 258
             +  LC  L+  S  L +L    C ++      +CR L +K      ++ LS+      
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES----LKELSLA----- 292

Query: 259 ENCPSSVVVELVS--FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN 316
            N        L+    L  G  L SL ++ C          FSS+L  +  L  L +S N
Sbjct: 293 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA-CCSHFSSVLAQNRFLLELQISNN 351

Query: 317 SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDI 376
            +       D        G G+    LR+L L   ++  +    L + L+   +L  LD+
Sbjct: 352 RLE------DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405

Query: 377 SDNTIEDDGIRSLIPYFVQASERCNP-LVELYLENCELSGRGVSQLLDTLS 426
           S+N + D GI  L    V++  +    L +L L +   S     +L     
Sbjct: 406 SNNCLGDAGILQL----VESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 452

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 84.6 bits (210), Expect = 8e-18
 Identities = 58/274 (21%), Positives = 98/274 (35%), Gaps = 25/274 (9%)

Query: 179 CQLLRES--KLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICR 235
           CQ L++S  +L++L L       ++ + LC ++   + +L  L     KL    +  +C 
Sbjct: 191 CQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA-SLRELALGSNKLGDVGMAELCP 249

Query: 236 SLCSKRKRIHKIENLSIDISSFIENCPSSV-VVELVSFLSSGRSLCSLKLRHCHLDRDFG 294
            L     R+  +  +        E   ++    +L   L +  SL  L L    L  +  
Sbjct: 250 GLLHPSSRLRTL-WIW-------ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301

Query: 295 RMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLC 354
           R++  +LLE    L  L +   S              FS       + L  L +  N L 
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFT------AACCSHFSS-VLAQNRFLLELQISNNRLE 354

Query: 355 KADARDLGSALVHI-PNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCEL 413
            A  R+L   L      L +L ++D  + D    SL           + L EL L N  L
Sbjct: 355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSL----AATLLANHSLRELDLSNNCL 410

Query: 414 SGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 447
              G+ QL++++         L + D        
Sbjct: 411 GDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME 444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 74.6 bits (184), Expect = 1e-14
 Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 24/144 (16%)

Query: 305 SSSLSILDLSGNSIG--GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLG 362
           S  +  LD+    +    W                  LQ  +++ L    L +A  +D+ 
Sbjct: 2   SLDIQSLDIQCEELSDARWAE------------LLPLLQQCQVVRLDDCGLTEARCKDIS 49

Query: 363 SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL- 421
           SAL   P L  L++  N + D G+  ++      +  C  + +L L+NC L+G G   L 
Sbjct: 50  SALRVNPALAELNLRSNELGDVGVHCVLQGL--QTPSCK-IQKLSLQNCCLTGAGCGVLS 106

Query: 422 --LDTLSTLRRPPTSLSIADNNLG 443
             L TL TL      L ++DN LG
Sbjct: 107 STLRTLPTL----QELHLSDNLLG 126

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 38/214 (17%), Positives = 69/214 (32%), Gaps = 33/214 (15%)

Query: 185 SKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 243
           S+L++L +       +    LC++L     +L  L     +L       +C +L     +
Sbjct: 256 SRLRTLWIWECGITAKGCGDLCRVLRAKE-SLKELSLAGNELGDEGARLLCETLLEPGCQ 314

Query: 244 IHKIENLS---------IDISSFIENCPSSVVVEL---------VSFLSSG-----RSLC 280
           +  +  +             SS +      + +++         V  L  G       L 
Sbjct: 315 LESL-WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR 373

Query: 281 SLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSL 340
            L L  C +  D      ++ L A+ SL  LDLS N +G      D           +  
Sbjct: 374 VLWLADCDV-SDSSCSSLAATLLANHSLRELDLSNNCLG------DAGILQLVESVRQPG 426

Query: 341 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEIL 374
             L  L L      +     L +     P+L ++
Sbjct: 427 CLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 92.5 bits (230), Expect = 1e-20
 Identities = 48/267 (17%), Positives = 81/267 (30%), Gaps = 44/267 (16%)

Query: 181 LLRESKLQSLVLRWIRFEEH-VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCS 239
           LL+  KL ++ L    F     + L   L +++  L  L   +  L P     I R+L  
Sbjct: 90  LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT-PLEHLYLHNNGLGPQAGAKIARALQE 148

Query: 240 KRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFS 299
                                                  L S+      L+ +     ++
Sbjct: 149 LAVNKKAKNA---------------------------PPLRSIICGRNRLE-NGSMKEWA 180

Query: 300 SLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG-KSLQSLRLLNLRGNNLCKADA 358
              ++   L  + +  N I          G    L  G    Q L++L+L+ N      +
Sbjct: 181 KTFQSHRLLHTVKMVQNGIRP-------EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS 233

Query: 359 RDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP--LVELYLENCELSGR 416
             L  AL   PNL  L ++D  +   G  ++    V A  +     L  L L+  E+   
Sbjct: 234 SALAIALKSWPNLRELGLNDCLLSARGAAAV----VDAFSKLENIGLQTLRLQYNEIELD 289

Query: 417 GVSQLLDTLSTLRRPPTSLSIADNNLG 443
            V  L   +         L +  N   
Sbjct: 290 AVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 80.1 bits (198), Expect = 1e-16
 Identities = 24/186 (12%), Positives = 50/186 (26%), Gaps = 14/186 (7%)

Query: 266 VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 325
              + + L    S+  + L    +         S  + +   L I + S    G    + 
Sbjct: 21  EKSVFAVLLEDDSVKEIVLSGNTIG-TEAARWLSENIASKKDLEIAEFSDIFTGRVKDEI 79

Query: 326 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDG 385
             +  L    A      L  + L  N         L   L     LE L + +N +    
Sbjct: 80  PEALRLLL-QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA 138

Query: 386 IRSL-----IPYFVQASERCNPLVELYLENCELSGRGVSQL---LDTLSTLRRPPTSLSI 437
              +          + ++   PL  +      L    + +      +   L     ++ +
Sbjct: 139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL----HTVKM 194

Query: 438 ADNNLG 443
             N + 
Sbjct: 195 VQNGIR 200

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 32/145 (22%), Positives = 50/145 (34%), Gaps = 16/145 (11%)

Query: 304 ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS 363
           A  S+    L  ++I                       S++ + L GN +    AR L  
Sbjct: 2   ARFSIEGKSLKLDAITT-------EDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSE 54

Query: 364 ALVHIPNLEILDISDNTIED--DGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL 421
            +    +LEI + SD       D I   +   +QA  +C  L  + L +          L
Sbjct: 55  NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL 114

Query: 422 LDTLS---TLRRPPTSLSIADNNLG 443
           +D LS    L      L + +N LG
Sbjct: 115 IDFLSKHTPL----EHLYLHNNGLG 135

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 36/205 (17%), Positives = 64/205 (31%), Gaps = 20/205 (9%)

Query: 185 SKLQSLVLRWIRFE-EHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 243
             L+S++    R E   ++   K    +   L +++ +   + P   EGI   L      
Sbjct: 159 PPLRSIICGRNRLENGSMKEWAKTFQSHR-LLHTVKMVQNGIRP---EGIEHLLLEGLAY 214

Query: 244 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLE 303
             +++ L +  ++F           L   L S  +L  L L  C L    G         
Sbjct: 215 CQELKVLDLQDNTFTHLG----SSALAIALKSWPNLRELGLNDCLL-SARGAAAVVDAFS 269

Query: 304 --ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADA--R 359
              +  L  L L  N I         +         + +  L  L L GN   + D    
Sbjct: 270 KLENIGLQTLRLQYNEIE------LDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVD 323

Query: 360 DLGSALVHIPNLEILDISDNTIEDD 384
           ++          E+ ++ D     D
Sbjct: 324 EIREVFSTRGRGELDELDDMEELTD 348

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 86.7 bits (215), Expect = 9e-19
 Identities = 47/248 (18%), Positives = 83/248 (33%), Gaps = 24/248 (9%)

Query: 185 SKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 243
           S L+ L L  +R        +  +L      L  +    C+L P+ +  +       RK 
Sbjct: 72  SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARK- 130

Query: 244 IHKIENLSIDISSFIENCPSSVVVELVS--FLSSGRSLCSLKLRHCHLDRDFGRMVFSSL 301
                   + +     N       + +    L     + +L+L +  L    G  V    
Sbjct: 131 --------LGLQ---LNSLGPEACKDLRDLLLHDQCQITTLRLSNNPL-TAAGVAVLMEG 178

Query: 302 LEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDL 361
           L  ++S++ L L    +G      D    L +       + L+ LN+  N      A  L
Sbjct: 179 LAGNTSVTHLSLLHTGLG------DEGLELLAA-QLDRNRQLQELNVAYNGAGDTAALAL 231

Query: 362 GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL 421
             A    P+LE+L +  N +  +G + L      A+E    +V    E   +S      L
Sbjct: 232 ARAAREHPSLELLHLYFNELSSEGRQVLRDLG-GAAEGGARVVVSLTEGTAVSEYWSVIL 290

Query: 422 LDTLSTLR 429
            +    L 
Sbjct: 291 SEVQRNLN 298

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 68.6 bits (168), Expect = 8e-13
 Identities = 35/178 (19%), Positives = 59/178 (33%), Gaps = 28/178 (15%)

Query: 277 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 336
            SL  L L    +      +V + L     +L  ++L+   +                G 
Sbjct: 72  SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD-------------PAGL 118

Query: 337 ---GKSLQSLRLLNLRGNNLCKADARDLGSALVH-IPNLEILDISDNTIEDDGIRSLIPY 392
                     R L L+ N+L     +DL   L+H    +  L +S+N +   G+  L   
Sbjct: 119 RTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVL--- 175

Query: 393 FVQASERCNPLVELYLENCELSGRGVSQLLDTL---STLRRPPTSLSIADNNLGRFCA 447
            ++       +  L L +  L   G+  L   L     L      L++A N  G   A
Sbjct: 176 -MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQL----QELNVAYNGAGDTAA 228

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 36/221 (16%), Positives = 67/221 (30%), Gaps = 20/221 (9%)

Query: 179 CQLLRE--SKLQSLVLRWIRFEEH-VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICR 235
             LL     ++ +L L         V  L + L  N+ ++  L  LH  L    +E +  
Sbjct: 147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT-SVTHLSLLHTGLGDEGLELLAA 205

Query: 236 SLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGR 295
            L   R+    ++ L++  +   +       + L        SL  L L    L    GR
Sbjct: 206 QLDRNRQ----LQELNVAYNGAGDTA----ALALARAAREHPSLELLHLYFNELS-SEGR 256

Query: 296 MVFSSLLEASSS---LSILDLSGNSIG----GWLSKYDRSGPLFSLGAGKSLQSLRLLNL 348
            V   L  A+     + +    G ++       LS+  R+   +     +    L L +L
Sbjct: 257 QVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDL 316

Query: 349 RGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSL 389
             +     +       L     +  L     +         
Sbjct: 317 EDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWS 357

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 23/196 (11%), Positives = 50/196 (25%), Gaps = 32/196 (16%)

Query: 185 SKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 243
           + +  L L      +E ++ L   L +N   L  L   +     +    + R+       
Sbjct: 183 TSVTHLSLLHTGLGDEGLELLAAQLDRNR-QLQELNVAYNGAGDTAALALARAAREHPS- 240

Query: 244 IHKIENLSIDISSFIENCPSSV-VVELVSFLSSGRSLCSLKLR--HCHLDRDFGRMVFSS 300
              +E L +       N  SS     L     +      + +         ++  ++ S 
Sbjct: 241 ---LELLHLY-----FNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSE 292

Query: 301 LLEASSS-----------LSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLR 349
           +    +S           L + DL  +             P       +    +R L  +
Sbjct: 293 VQRNLNSWDRARVQRHLELLLRDLEDSRGATL-------NPWRKAQLLRVEGEVRALLEQ 345

Query: 350 GNNLCKADARDLGSAL 365
             +             
Sbjct: 346 LGSSGSPSGSWSHPQF 361

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 65.7 bits (159), Expect = 6e-12
 Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 10/147 (6%)

Query: 279 LCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGK 338
           L SL++    L       +  S L     L +     +                 L +  
Sbjct: 195 LKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD-----GDMNVFRPLFSKD 249

Query: 339 SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASE 398
              +L+ L +               + + +P LE +DIS   + D+G R L+       +
Sbjct: 250 RFPNLKWLGIVDAEEQNVVVEMFLESDI-LPQLETMDISAGVLTDEGARLLL----DHVD 304

Query: 399 RCNPLVELYLENCELSGRGVSQLLDTL 425
           +   L  + ++   LS     +L  +L
Sbjct: 305 KIKHLKFINMKYNYLSDEMKKELQKSL 331

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 58.8 bits (141), Expect = 1e-09
 Identities = 33/183 (18%), Positives = 62/183 (33%), Gaps = 23/183 (12%)

Query: 207 LLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVV 266
           +  +    L SLE +   L  S VE I  S     +++     L + +  +  +     +
Sbjct: 187 IGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKL----VLYVGVEDYGFDGD---M 239

Query: 267 VELVSFLSSGR--SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 324
                  S  R  +L  L +           M   S +     L  +D+S   +      
Sbjct: 240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI--LPQLETMDISAGVLTD---- 293

Query: 325 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDD 384
               G    L     ++ L+ +N++ N L     ++L  +L        +D+SD+   DD
Sbjct: 294 ---EGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPM-----KIDVSDSQEYDD 345

Query: 385 GIR 387
              
Sbjct: 346 DYS 348

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 21/149 (14%)

Query: 301 LLEASSSLSILDLSG-NSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADAR 359
           +      L  ++L+   +I         +    +  A K+   ++  ++ G       A 
Sbjct: 31  IQNNDPDLEEVNLNNIMNIP------VPTLKACA-EALKTNTYVKKFSIVGTRSNDPVAF 83

Query: 360 DLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENC--ELSGRG 417
            L   L     L+ L++  N I   GI +L    V+A +    L+EL ++N    L    
Sbjct: 84  ALAEMLKVNNTLKSLNVESNFISGSGILAL----VEALQSNTSLIELRIDNQSQPLGNNV 139

Query: 418 VSQLLDTL---STLRRPPTSLSIADNNLG 443
             ++ + L   +TL              G
Sbjct: 140 EMEIANMLEKNTTL----LKFGYHFTQQG 164

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 24/162 (14%), Positives = 52/162 (32%), Gaps = 16/162 (9%)

Query: 273 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLF 332
            ++   L  + L +            +  L+ ++ +    + G          D     F
Sbjct: 32  QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN------DPVA--F 83

Query: 333 SLGAG-KSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN--TIEDDGIRSL 389
           +L    K   +L+ LN+  N +  +    L  AL    +L  L I +    + ++    +
Sbjct: 84  ALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI 143

Query: 390 IPYFVQASERCNPLVELYLENCELSGRG-VSQLLDTLSTLRR 430
                   E+   L++      +   R   S  +   + L R
Sbjct: 144 A----NMLEKNTTLLKFGYHFTQQGPRLRASNAMMNNNDLVR 181

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.4 bits (142), Expect = 3e-09
 Identities = 53/192 (27%), Positives = 80/192 (41%), Gaps = 33/192 (17%)

Query: 251 SIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSI 310
           SID+SS      +     + S L S   L SL L + H++         S  + S+SL+ 
Sbjct: 54  SIDLSS---KPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV------SGFKCSASLTS 104

Query: 311 LDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN 370
           LDLS NS+ G ++       L SLG   S   L+ LN+  N L   D     S  + + +
Sbjct: 105 LDLSRNSLSGPVT------TLTSLG---SCSGLKFLNVSSNTL---DFPGKVSGGLKLNS 152

Query: 371 LEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRR 430
           LE+LD+S N+I               S+ C  L  L +   ++SG      +     L  
Sbjct: 153 LEVLDLSANSIS-----GANVVGWVLSDGCGELKHLAISGNKISG---DVDVSRCVNLE- 203

Query: 431 PPTSLSIADNNL 442
               L ++ NN 
Sbjct: 204 ---FLDVSSNNF 212

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.6 bits (114), Expect = 6e-06
 Identities = 54/248 (21%), Positives = 85/248 (34%), Gaps = 51/248 (20%)

Query: 212 SETLASLEFL---HCKLS---PSFVEGICRSLCSKRKRIHKIEN-LSIDISSFIENCPSS 264
              L SL++L     K +   P F+ G C +L      +    N     +  F  +C   
Sbjct: 265 PLPLKSLQYLSLAENKFTGEIPDFLSGACDTL----TGLDLSGNHFYGAVPPFFGSCSLL 320

Query: 265 VVVEL----------VSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLS 314
             + L          +  L   R L  L L         G  +  SL   S+SL  LDLS
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS---GE-LPESLTNLSASLLTLDLS 376

Query: 315 GNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEIL 374
            N+          SGP+          +L+ L L+ N         +   L +   L  L
Sbjct: 377 SNNF---------SGPILPNLCQNPKNTLQELYLQNNGFT----GKIPPTLSNCSELVSL 423

Query: 375 DISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTS 434
            +S N +   G    IP  +      + L +L L    L G    ++   L  ++    +
Sbjct: 424 HLSFNYLS--GT---IPSSLG---SLSKLRDLKLWLNMLEG----EIPQELMYVKT-LET 470

Query: 435 LSIADNNL 442
           L +  N+L
Sbjct: 471 LILDFNDL 478

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 38/176 (21%), Positives = 66/176 (37%), Gaps = 47/176 (26%)

Query: 273 LSSGRSLCSLKLRHCHLDRDFGRM-VFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPL 331
           +S   +L  L +   +       +          S+L  LD+SGN + G  S+       
Sbjct: 196 VSRCVNLEFLDVSSNNF---STGIPFLGDC----SALQHLDISGNKLSGDFSR------- 241

Query: 332 FSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIP-----NLEILDISDNTIEDDGI 386
            ++    +   L+LLN+  N         +G     IP     +L+ L +++N    +  
Sbjct: 242 -AIS---TCTELKLLNISSNQF-------VGP----IPPLPLKSLQYLSLAENKFTGE-- 284

Query: 387 RSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 442
              IP F+  +  C+ L  L L      G  V     + S L     SL+++ NN 
Sbjct: 285 ---IPDFLSGA--CDTLTGLDLSGNHFYGA-VPPFFGSCSLL----ESLALSSNNF 330

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 39/145 (26%)

Query: 249 NLSIDISSFIENCPSSVVVELV---------SFLSSGRSLCSLKLRHCHLD----RDFGR 295
            LS  I S + +      ++L            L   ++L +L L    L          
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488

Query: 296 MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPL-FSLGAGKSLQSLRLLNLRGNNLC 354
                     ++L+ + LS N +         +G +   +G    L++L +L L  N+  
Sbjct: 489 C---------TNLNWISLSNNRL---------TGEIPKWIG---RLENLAILKLSNNSF- 526

Query: 355 KADARDLGSALVHIPNLEILDISDN 379
              + ++ + L    +L  LD++ N
Sbjct: 527 ---SGNIPAELGDCRSLIWLDLNTN 548

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 37/205 (18%), Positives = 61/205 (29%), Gaps = 35/205 (17%)

Query: 249 NLSIDISSFIENCPS-----------SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMV 297
                  +     PS             V    S     R+L  L L + ++  +    +
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI-ANINDDM 499

Query: 298 FSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKAD 357
              L      L ILDL  N++       +  GP++ L   K L  L +LNL  N   +  
Sbjct: 500 LEGL----EKLEILDLQHNNLARLWKHANPGGPIYFL---KGLSHLHILNLESNGFDEIP 552

Query: 358 ARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG 417
                     +  L+I+D+  N      + +L             L  L L+   ++   
Sbjct: 553 V----EVFKDLFELKIIDLGLN-----NLNTLPASVFNNQVS---LKSLNLQKNLITSVE 600

Query: 418 VSQLLDTLSTLRRPPTSLSIADNNL 442
                     L    T L +  N  
Sbjct: 601 KKVFGPAFRNL----TELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 34/173 (19%), Positives = 57/173 (32%), Gaps = 26/173 (15%)

Query: 277 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 336
            +L  L L +  + +            A+SSL  L+LS N I             FS G 
Sbjct: 145 ENLQELLLSNNKI-QALKSEELDIF--ANSSLKKLELSSNQIKE-----------FSPGC 190

Query: 337 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 396
             ++  L  L L    L  +    L   L    ++  L +S++      + +        
Sbjct: 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNS-----QLSTTSNTTFLG 244

Query: 397 SERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCANS 449
            +  N L  L L    L+  G +     L  L        +  NN+    ++S
Sbjct: 245 LKWTN-LTMLDLSYNNLNVVG-NDSFAWLPQLE----YFFLEYNNIQHLFSHS 291

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 53/273 (19%), Positives = 92/273 (33%), Gaps = 47/273 (17%)

Query: 176 EETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICR 235
            E   +   S L+ L L   + +E               L  L   + +L PS  E +C 
Sbjct: 162 SEELDIFANSSLKKLELSSNQIKE----FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL 217

Query: 236 SLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGR 295
            L +       I NLS+  +S +    ++  + L        +L  L L + +L    G 
Sbjct: 218 ELANT-----SIRNLSLS-NSQLSTTSNTTFLGL-----KWTNLTMLDLSYNNL-NVVGN 265

Query: 296 MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCK 355
             F+ L      L    L  N+I                 +   L ++R LNL+ +   +
Sbjct: 266 DSFAWL----PQLEYFFLEYNNIQH-----------LFSHSLHGLFNVRYLNLKRSFTKQ 310

Query: 356 ADARDL-----GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLEN 410
           + +          +   +  LE L++ DN I       +             L  L L N
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIP-----GIKS---NMFTGLINLKYLSLSN 362

Query: 411 CELSGRGVSQLLDTLSTLRRPP-TSLSIADNNL 442
              S R ++   +T  +L   P   L++  N +
Sbjct: 363 SFTSLRTLT--NETFVSLAHSPLHILNLTKNKI 393

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 3e-08
 Identities = 73/527 (13%), Positives = 159/527 (30%), Gaps = 151/527 (28%)

Query: 11  VTGDDVIPYVYELPAD------LFDILLTCLPPLALQKLQTKMDGDDCGSPDYCF----- 59
           +   + I ++            LF  LL+       Q+   +   ++    +Y F     
Sbjct: 45  ILSKEEIDHIIMSKDAVSGTLRLFWTLLS------KQEEMVQKFVEEVLRINYKFLMSPI 98

Query: 60  ---ENGR---------KRGRYGNFNTVWKKLFKTRWSGFTD------QIEPVDWQQRYWE 101
              +            +R R  N N V+ K   +R   +        ++ P         
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN------ 152

Query: 102 AHVQG-------CLDEAAELV----VLPSFRGLISDINIS-----DTILNYIGYEQQMNH 145
             + G        +  A ++     V       I  +N+      +T+L      + +  
Sbjct: 153 VLIDGVLGSGKTWV--ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL------EMLQK 204

Query: 146 LACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQS--LVLRWIRFEEHVQA 203
           L     ++  +      ++  ++L+      E  +LL+    ++  LVL  ++  +   A
Sbjct: 205 L---LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 204 L---CKLLI-----QNSETLASLEFLHCKL---SPSFVEGICRSLCSK---------RKR 243
               CK+L+     Q ++ L++    H  L   S +      +SL  K          + 
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321

Query: 244 IHKIENLSID-ISSFIENCPS-------SVVVELVSFLSSGRSLCSLK---LRHCHLDRD 292
           +       +  I+  I +  +           +L + + S  SL  L+    R       
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES--SLNVLEPAEYRKMF--DR 377

Query: 293 FGRMVF--SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRG 350
               VF  S+ +  +  LS++         W     +S  +  +     L    L+  + 
Sbjct: 378 LS--VFPPSAHIP-TILLSLI---------WFDV-IKSDVMVVV---NKLHKYSLVEKQP 421

Query: 351 NN--------LCKADARDLGSALVH---IPNLEILDISDN----TIEDDG-IRSLIPY-- 392
                       +   +      +H   + +  I    D+        D    S I +  
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481

Query: 393 -FVQASERCNPLVELYL---------ENCELSGRGVSQLLDTLSTLR 429
             ++  ER      ++L          +   +      +L+TL  L+
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 1e-07
 Identities = 41/305 (13%), Positives = 82/305 (26%), Gaps = 79/305 (25%)

Query: 22  ELPADLFDILLTCLPPLALQKLQTKMDGDDCGSPDYC------FENGRKRGRYGNFNTVW 75
            L     D     LP   L             +P           +G     + N+  V 
Sbjct: 305 SLLLKYLDCRPQDLPREVLT-----------TNPRRLSIIAESIRDGLAT--WDNWKHVN 351

Query: 76  KKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTIL- 134
                T      + +EP ++++ +              L V P         +I   +L 
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFD------------RLSVFP------PSAHIPTILLS 393

Query: 135 ----NYIGYEQQ--MNHLACDYS---------KLSYHCQQFGHYARCLRLQ--NALCVEE 177
               + I  +    +N L   YS          +S          +       +   V+ 
Sbjct: 394 LIWFDVIKSDVMVVVNKL-HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452

Query: 178 TCQLLRESKLQSLVLRWIR------FEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVE 231
              + +      L+  ++          H++      I++ E +     +   L   F+E
Sbjct: 453 Y-NIPKTFDSDDLIPPYLDQYFYSHIGHHLKN-----IEHPERMTLFRMVF--LDFRFLE 504

Query: 232 GICRSLCSKRKRIHKIENLSIDI---SSFI-ENCP--SSVVVELVSFLSSGRSLCSLKLR 285
              R   +       I N    +     +I +N P    +V  ++ FL          + 
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL---IC 561

Query: 286 HCHLD 290
             + D
Sbjct: 562 SKYTD 566

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 7e-07
 Identities = 68/424 (16%), Positives = 126/424 (29%), Gaps = 123/424 (29%)

Query: 40  LQKLQTKMDGDDCGSPDYC------FENGRKRGR-------YGN----FNTVW------- 75
           LQKL  ++D +     D+         + +   R       Y N       V        
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 76  -----KKLFKTRWSGFTDQIEPVDWQQRYWEAHVQG-CLDEAAELVV---------LPSF 120
                K L  TR+   TD +          + H      DE   L++         LP  
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR- 320

Query: 121 RGLISDIN------ISDTILNYIGYEQQMNHLACD----YSKLSYHCQQFGHYARCLRLQ 170
              +   N      I+++I + +       H+ CD      + S +  +   Y +     
Sbjct: 321 --EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF--- 375

Query: 171 NALCVEETCQLLRES---KLQSLVLRWIRFEEH-----VQALC-KLLI--QNSETLASLE 219
                 +   +   S       L L W    +      V  L    L+  Q  E+  S+ 
Sbjct: 376 ------DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429

Query: 220 FLHCKLSPSFVEGICRSLCSKRKRIHK--IENLSIDISSFIENCPSSVVVE-LVSFLSSG 276
            ++ +L         +        +H+  +++ +I  +   ++     + +   S +  G
Sbjct: 430 SIYLEL---------KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI--G 478

Query: 277 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL-SKYDRSGPLFSLG 335
             L    + H      F RMVF            LD        +L  K       ++  
Sbjct: 479 HHL--KNIEHPERMTLF-RMVF------------LDFR------FLEQKIRHDSTAWN-A 516

Query: 336 AGKSLQSLRLLNLRGNNLCKADA------RDL-------GSALVHIPNLEILDISDNTIE 382
           +G  L +L+ L      +C  D         +          L+     ++L I+    E
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA-E 575

Query: 383 DDGI 386
           D+ I
Sbjct: 576 DEAI 579

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 52.5 bits (126), Expect = 3e-08
 Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 16/139 (11%)

Query: 256 SFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSG 315
           + ++      +  L+    + + +    L +  +  D        L+E S SL +L++  
Sbjct: 49  NNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS-DSEARGLIELIETSPSLRVLNVES 107

Query: 316 NSIGG----WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNL 371
           N +       L +        S    +S+   +  N R + L      D+  A+    +L
Sbjct: 108 NFLTPELLARLLR--------STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESL 159

Query: 372 EILDISDNTIEDDGIRSLI 390
             + IS         R  +
Sbjct: 160 LRVGIS---FASMEARHRV 175

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 16/109 (14%), Positives = 43/109 (39%), Gaps = 14/109 (12%)

Query: 341 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERC 400
           + +   +L    +  ++AR L   +   P+L +L++  N +  + +  L    ++++   
Sbjct: 70  KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL----LRSTLVT 125

Query: 401 NPLVELYLENCELSGRGV------SQLLDTLSTLRRPPTSLSIADNNLG 443
             +VE   +N   S  G          ++   +L      + I+  ++ 
Sbjct: 126 QSIVEFKADNQRQSVLGNQVEMDMMMAIEENESL----LRVGISFASME 170

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 22/157 (14%), Positives = 47/157 (29%), Gaps = 15/157 (9%)

Query: 278 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG 337
            L  + + +                  S  +    L+  +I       D           
Sbjct: 42  DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS------DSEARGL----I 91

Query: 338 KSLQ---SLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFV 394
           + ++   SLR+LN+  N L       L  + +   ++      +      G +  +   +
Sbjct: 92  ELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM-DMM 150

Query: 395 QASERCNPLVELYLENCELSGRG-VSQLLDTLSTLRR 430
            A E    L+ + +    +  R  VS+ L+      R
Sbjct: 151 MAIEENESLLRVGISFASMEARHRVSEALERNYERVR 187

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 37/173 (21%), Positives = 60/173 (34%), Gaps = 29/173 (16%)

Query: 271 SFLSSGRSLCSLKLRHCHLDR-DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSG 329
             L +  +L  L L H  ++  D   +   +L    S L  L+LS N             
Sbjct: 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNL----SHLQSLNLSYNEPLS--------- 390

Query: 330 PLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSL 389
                 A K    L LL+L    L   DA+   S   ++  L++L++S +      +   
Sbjct: 391 --LKTEAFKECPQLELLDLAFTRLKVKDAQ---SPFQNLHLLKVLNLSHS-----LLDIS 440

Query: 390 IPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 442
                        L  L L+       G  Q  ++L TL R    L ++  +L
Sbjct: 441 SEQLFDGLPA---LQHLNLQGNHFPK-GNIQKTNSLQTLGR-LEILVLSFCDL 488

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 33/166 (19%), Positives = 63/166 (37%), Gaps = 30/166 (18%)

Query: 277 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 336
             L  L L    L     +  F +L      L +L+LS + +              S   
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNL----HLLKVLNLSHSLLDI-----------SSEQL 444

Query: 337 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 396
              L +L+ LNL+GN+  K + +    +L  +  LEIL +S        + S+  +   +
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNIQKTN-SLQTLGRLEILVLSFC-----DLSSIDQHAFTS 498

Query: 397 SERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 442
            +    +  + L +  L+     + L  L  +      L++A N++
Sbjct: 499 LKM---MNHVDLSHNRLTS-SSIEALSHLKGIY-----LNLASNHI 535

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 34/170 (20%), Positives = 58/170 (34%), Gaps = 30/170 (17%)

Query: 278 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG 337
            LC + +   +L + +   + S+     S L  LDL+   +               L +G
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-------------ELPSG 296

Query: 338 -KSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 396
              L +L+ L L  N            +  + P+L  L I  NT         +      
Sbjct: 297 LVGLSTLKKLVLSANKF----ENLCQISASNFPSLTHLSIKGNTK-------RLELGTGC 345

Query: 397 SERCNPLVELYLENCELSGRGV-SQLLDTLSTLRRPPTSLSIADNNLGRF 445
            E    L EL L + ++      +  L  LS L+    SL+++ N     
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ----SLNLSYNEPLSL 391

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 21/117 (17%)

Query: 263 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 322
               ++  + L +   L  L L  C L     +  F+SL      ++ +DLS N +    
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDL-SSIDQHAFTSL----KMMNHVDLSHNRLTS-- 514

Query: 323 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN 379
                     S+ A   L+ + L NL  N++         S L  +     +++  N
Sbjct: 515 ---------SSIEALSHLKGIYL-NLASNHISIILP----SLLPILSQQRTINLRQN 557

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 26/170 (15%), Positives = 47/170 (27%), Gaps = 32/170 (18%)

Query: 277 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 336
           ++L  L      +       +    L    +L  L L  N I               L  
Sbjct: 105 KALKHLFFIQTGI-----SSIDFIPLHNQKTLESLYLGSNHISS-----------IKLPK 148

Query: 337 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 396
           G   + L++L+ + N +      D+ S L    NL  L+++ N I               
Sbjct: 149 GFPTEKLKVLDFQNNAIHYLSKEDMSS-LQQATNLS-LNLNGNDIAG---------IEPG 197

Query: 397 SERCNPLVELYLENCELSGRGVSQL-LDTLSTLRRPPTSLSIADNNLGRF 445
           +        L     +        L   T+ +L       +  D +    
Sbjct: 198 AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLW----LGTFEDMDDEDI 243

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 42/200 (21%), Positives = 67/200 (33%), Gaps = 26/200 (13%)

Query: 185 SKLQSLVLRWIRFEE-HVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 243
            KLQ+L LR       H       +  +   L +L  ++   +   +             
Sbjct: 362 EKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYF 421

Query: 244 IHKIENL-SIDISS-FIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSL 301
           + ++ +L  + ++     +C            S   SL  L L    L   +   +   +
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGD------QTPSENPSLEQLFLGENMLQLAWETELCWDV 475

Query: 302 LEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDL 361
            E  S L +L L+ N +                G    L +LR L+L  N L      DL
Sbjct: 476 FEGLSHLQVLYLNHNYLNS-----------LPPGVFSHLTALRGLSLNSNRLTVLSHNDL 524

Query: 362 GSALVHIPNLEILDISDNTI 381
                   NLEILDIS N +
Sbjct: 525 ------PANLEILDISRNQL 538

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 32/167 (19%), Positives = 52/167 (31%), Gaps = 29/167 (17%)

Query: 277 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 336
             L  L+L   +      +  F +L     +L ILDL  + I                 A
Sbjct: 48  EQLQLLELGSQYTPLTIDKEAFRNL----PNLRILDLGSSKIYF-----------LHPDA 92

Query: 337 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 396
            + L  L  L L    L  +DA        ++  L  LD+S N I    +          
Sbjct: 93  FQGLFHLFELRLYFCGL--SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS- 149

Query: 397 SERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPP-TSLSIADNNL 442
                 L  +   + ++           L  L+    +  S+A N+L
Sbjct: 150 ------LKSIDFSSNQIF----LVCEHELEPLQGKTLSFFSLAANSL 186

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 46/293 (15%), Positives = 80/293 (27%), Gaps = 45/293 (15%)

Query: 176 EETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICR 235
           E   + L+   L    L        V       +     +  LE L   +S +       
Sbjct: 165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM-VLEILD--VSGNGWTVDIT 221

Query: 236 SLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSG---RSLCSLKLRHCHLDRD 292
              S      +  +L +             + +      +G    S+  L L H  +   
Sbjct: 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV-FS 280

Query: 293 FGRMVFSSLLEASSSLSILDLSGNSIG----------GWLSKYDRSGPLFSL---GAGKS 339
               VF +L      L +L+L+ N I             L   + S  L           
Sbjct: 281 LNSRVFETL----KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336

Query: 340 LQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASER 399
           L  +  ++L+ N++              +  L+ LD+ DN +        IP        
Sbjct: 337 LPKVAYIDLQKNHIAIIQD----QTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFL---S 389

Query: 400 CNPLVE----------LYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 442
            N LV           ++L    L    +   L  +  L      L +  N  
Sbjct: 390 GNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHL----QILILNQNRF 438

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.9 bits (114), Expect = 6e-06
 Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 18/176 (10%)

Query: 271 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGP 330
            +  + ++L  L L    +   +    F  L    +SL  +D S N I            
Sbjct: 117 GYFRNLKALTRLDLSKNQIRSLYLHPSFGKL----NSLKSIDFSSNQI-----FLVCEHE 167

Query: 331 LFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN--LEILDISDNTIEDDGIRS 388
           L  L      ++L   +L  N+L    + D G  +    N  LEILD+S N    D I  
Sbjct: 168 LEPL----QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD-ITG 222

Query: 389 LIPYFVQASERCNPLVELYLENCELSGRGVSQL-LDTLSTLRRPP-TSLSIADNNL 442
                +  S+  + ++  ++         +     +T + L R     L ++   +
Sbjct: 223 NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV 278

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 26/166 (15%), Positives = 57/166 (34%), Gaps = 28/166 (16%)

Query: 298 FSSLLEASSSLSILDLSGNSIG----------GWLSKYDRSGPLFSL----GAGKSLQSL 343
            + + +  ++   L LS N I             L   +       L     A ++L +L
Sbjct: 16  LTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNL 75

Query: 344 RLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL 403
           R+L+L  + +          A   + +L  L +    + D  ++      ++A      L
Sbjct: 76  RILDLGSSKIYFLHP----DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA------L 125

Query: 404 VELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCANS 449
             L L   ++    +      L++L+    S+  + N +   C + 
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLK----SIDFSSNQIFLVCEHE 167

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 35/166 (21%), Positives = 58/166 (34%), Gaps = 28/166 (16%)

Query: 277 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 336
             L  L L  C +     + +     ++ S LS L L+GN I              +LGA
Sbjct: 52  PELQVLDLSRCEI-----QTIEDGAYQSLSHLSTLILTGNPIQS-----------LALGA 95

Query: 337 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 396
              L SL+ L     NL    A      + H+  L+ L+++ N I+   +          
Sbjct: 96  FSGLSSLQKLVAVETNL----ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN- 150

Query: 397 SERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 442
                 L  L L + ++        L  L  +     SL ++ N +
Sbjct: 151 ------LEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLSLDLSLNPM 189

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 41/265 (15%), Positives = 76/265 (28%), Gaps = 30/265 (11%)

Query: 181 LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSE--TLASLEFLHCKLSPSFVEGICRSLC 238
             +E +L  L LR      +V   C   +   E   L   EF +      F +     LC
Sbjct: 196 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255

Query: 239 SKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVF 298
           +            + I  F        + +++   +   ++ S  L    ++R       
Sbjct: 256 N------------LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303

Query: 299 SSLLEAS-SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKAD 357
                    +          +         S    +  +   L SL  L+L  N L    
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 358 ARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG 417
                 +     +L+ LD+S N     G+ ++   F         L  L  ++  L    
Sbjct: 364 C--CSQSDFGTTSLKYLDLSFN-----GVITMSSNF----LGLEQLEHLDFQHSNLKQMS 412

Query: 418 VSQLLDTLSTLRRPPTSLSIADNNL 442
              +  +L  L      L I+  + 
Sbjct: 413 EFSVFLSLRNLIY----LDISHTHT 433

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 33/133 (24%), Positives = 49/133 (36%), Gaps = 26/133 (19%)

Query: 278 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG 337
           SL  LK+       +F   +F+ L     +L+ LDLS   +              S  A 
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTEL----RNLTFLDLSQCQLEQ-----------LSPTAF 490

Query: 338 KSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQAS 397
            SL SL++LN+  NN    D          + +L++LD S N I      +     +Q  
Sbjct: 491 NSLSSLQVLNMSHNNFFSLDT----FPYKCLNSLQVLDYSLNHIM-----TSKKQELQHF 541

Query: 398 ERCNPLVELYLEN 410
                L  L L  
Sbjct: 542 PS--SLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 28/138 (20%)

Query: 305 SSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSA 364
             S   LDLS N +        R    +S     S   L++L+L    +   +      A
Sbjct: 27  PFSTKNLDLSFNPL--------RHLGSYSFF---SFPELQVLDLSRCEIQTIED----GA 71

Query: 365 LVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDT 424
              + +L  L ++ N      I+SL      A    + L +L      L+    +  +  
Sbjct: 72  YQSLSHLSTLILTGN-----PIQSLAL---GAFSGLSSLQKLVAVETNLASL-ENFPIGH 122

Query: 425 LSTLRRPPTSLSIADNNL 442
           L TL+     L++A N +
Sbjct: 123 LKTLK----ELNVAHNLI 136

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 27/138 (19%)

Query: 277 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 336
            SL +LK+       +    VF++     ++L+ LDLS   +              S G 
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNVFANT----TNLTFLDLSKCQLEQ-----------ISWGV 492

Query: 337 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 396
             +L  L+LLN+  NNL   D+    S    + +L  LD S N IE     +        
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLDS----SHYNQLYSLSTLDCSFNRIE-----TSKGILQHF 543

Query: 397 SERCNPLVELYLENCELS 414
            +    L    L N  ++
Sbjct: 544 PKS---LAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 55/289 (19%), Positives = 89/289 (30%), Gaps = 55/289 (19%)

Query: 181 LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSET--LASLEFLHCKLSPSFVEGICRSLC 238
             +  KL  L LR      ++   C   +       L   EF   +    F   I   LC
Sbjct: 200 AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC 259

Query: 239 SKRK---RIHKIENLSIDISSFIENCPSSVVVEL-------VSFLSSGRSLCSLKLRHCH 288
                  R+    + S DI  F     +   + L       +  +       SL +  C 
Sbjct: 260 DVTIDEFRLTYTNDFSDDIVKF-HCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQ 318

Query: 289 LDRDFGRMVFSSL---------------LEASSSLSILDLSGNSIGGWLSKYDRSGPLFS 333
           L + F  +    L                 A  SLS LDLS N++      +        
Sbjct: 319 L-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNAL-----SFSGCCSYSD 372

Query: 334 LGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYF 393
           LG      SLR L+L  N         + +  + +  L+ LD   +T++       +  F
Sbjct: 373 LG----TNSLRHLDLSFNGA-----IIMSANFMGLEELQHLDFQHSTLKR------VTEF 417

Query: 394 VQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 442
             A      L+ L +            +   L++L      L +A N+ 
Sbjct: 418 -SAFLSLEKLLYLDISYTNTKID-FDGIFLGLTSLNT----LKMAGNSF 460

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 30/174 (17%), Positives = 53/174 (30%), Gaps = 34/174 (19%)

Query: 277 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 336
            S  ++ L    L +      FS+     S L  LDLS   I                 A
Sbjct: 32  SSTKNIDLSFNPL-KILKSYSFSNF----SELQWLDLSRCEIET-----------IEDKA 75

Query: 337 GKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQ 395
              L  L  L L GN +     +     +   + +LE L   +       + SL  + + 
Sbjct: 76  WHGLHHLSNLILTGNPI-----QSFSPGSFSGLTSLENLVAVET-----KLASLESFPIG 125

Query: 396 ASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCANS 449
                  L +L + +  +    +      L+ L      + ++ N +     N 
Sbjct: 126 QLIT---LKKLNVAHNFIHSCKLPAYFSNLTNLVH----VDLSYNYIQTITVND 172

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 31/156 (19%), Positives = 51/156 (32%), Gaps = 30/156 (19%)

Query: 277 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 336
            SL +L      L       + S  +    +L  L+++ N I        +    FS   
Sbjct: 104 TSLENLVAVETKL-----ASLESFPIGQLITLKKLNVAHNFI-----HSCKLPAYFS--- 150

Query: 337 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN---TIEDDGIRSLIPYF 393
             +L +L  ++L  N +      DL     +      LD+S N    I+D   + +    
Sbjct: 151 --NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI---- 204

Query: 394 VQASERCNPLVELYLENCELSGRGVSQLLDTLSTLR 429
                    L EL L     S   +   L  L+ L 
Sbjct: 205 --------KLHELTLRGNFNSSNIMKTCLQNLAGLH 232

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 31/148 (20%), Positives = 49/148 (33%), Gaps = 34/148 (22%)

Query: 302 LEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDL 361
           L     L  L L  N I               +     L  L  L+L  N +      D+
Sbjct: 127 LVHLPQLESLYLGNNKI-------------TDITVLSRLTKLDTLSLEDNQI-----SDI 168

Query: 362 GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL 421
              L  +  L+ L +S N I D  +R+L             L  L L + E     +++ 
Sbjct: 169 -VPLAGLTKLQNLYLSKNHISD--LRAL--------AGLKNLDVLELFSQEC----LNKP 213

Query: 422 LDTLSTLRRPPTSLSIADNNLGRFCANS 449
           ++  S L  P  ++   D +L      S
Sbjct: 214 INHQSNLVVPN-TVKNTDGSLVTPEIIS 240

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 18/142 (12%)

Query: 243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLL 302
           +I  IENL   +  F     S   +  +      R L +L + +  + R     +   L 
Sbjct: 30  KIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICR-----IGEGLD 84

Query: 303 EASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCK-ADARDL 361
           +A   L+ L L+ NS+            L  L    SL+SL  L +  N +      R  
Sbjct: 85  QALPDLTELILTNNSLVELGD-------LDPL---ASLKSLTYLCILRNPVTNKKHYRL- 133

Query: 362 GSALVHIPNLEILDISDNTIED 383
              +  +P + +LD     +++
Sbjct: 134 -YVIYKVPQVRVLDFQKVKLKE 154

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 32/258 (12%), Positives = 78/258 (30%), Gaps = 31/258 (12%)

Query: 185 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRI 244
           S ++ L LR               +   E  + ++ L  + S    +     L    + I
Sbjct: 196 SSVRYLELRDTNLAR----FQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYI 250

Query: 245 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEA 304
            ++  +  D  +   N            +S    + ++ +R  H+ + +     S++   
Sbjct: 251 LELSEVEFDDCTL--NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308

Query: 305 SSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSA 364
              +  + +  + +            L      + L+SL  L+L  N +   +     + 
Sbjct: 309 LEKVKRITVENSKV-----------FLVPCSFSQHLKSLEFLDLSENLM-VEEYLKNSAC 356

Query: 365 LVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDT 424
               P+L+ L +S N +        +    +       L  L +          S     
Sbjct: 357 KGAWPSLQTLVLSQNHLRS------MQKTGEILLTLKNLTSLDISRNTFHPMPDS--CQW 408

Query: 425 LSTLRRPPTSLSIADNNL 442
              +R     L+++   +
Sbjct: 409 PEKMR----FLNLSSTGI 422

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 40/201 (19%), Positives = 65/201 (32%), Gaps = 47/201 (23%)

Query: 260 NCPSSVVVELVSFLSSGRSLCS-----------LKLRHCHLDRDFGRMVFSSLLEASSSL 308
           +C +S V +        RS  S           L L    +    G     +     ++L
Sbjct: 3   SCDASGVCDG-----RSRSFTSIPSGLTAAMKSLDLSFNKI-TYIGHGDLRAC----ANL 52

Query: 309 SILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHI 368
            +L L  + I                 A  SL SL  L+L  N+L    +    S    +
Sbjct: 53  QVLILKSSRINT-----------IEGDAFYSLGSLEHLDLSDNHLSSLSS----SWFGPL 97

Query: 369 PNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTL 428
            +L+ L++  N  +  G+ SL P           L  L + N E            L++L
Sbjct: 98  SSLKYLNLMGNPYQTLGVTSLFPNLTN-------LQTLRIGNVETFSEIRRIDFAGLTSL 150

Query: 429 RRPPTSLSIADNNLGRFCANS 449
                 L I   +L  + + S
Sbjct: 151 NE----LEIKALSLRNYQSQS 167

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 34/234 (14%), Positives = 68/234 (29%), Gaps = 31/234 (13%)

Query: 181 LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 240
           +++   L+ L +R  R    +      ++  S  L  L   + +++ +    +  +    
Sbjct: 64  IIKSLSLKRLTVRAARIPSRILFGALRVLGIS-GLQELTLENLEVTGTAPPPLLEATGPD 122

Query: 241 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSS 300
              ++          +++                    L  L +   H            
Sbjct: 123 LNILNLRNVSWATRDAWLAELQQW----------LKPGLKVLSIAQAHSLN-----FSCE 167

Query: 301 LLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARD 360
            +    +LS LDLS N   G          L S        +L++L LR   +       
Sbjct: 168 QVRVFPALSTLDLSDNPELGER-------GLISALCPLKFPTLQVLALRNAGMETPS-GV 219

Query: 361 LGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELS 414
             +       L+ LD+S N      +R        + +  + L  L L    L 
Sbjct: 220 CSALAAARVQLQGLDLSHN-----SLRDAAG--APSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 41/232 (17%), Positives = 71/232 (30%), Gaps = 20/232 (8%)

Query: 211 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELV 270
           N    A +E      S  ++     +     +    I++LS+   +       S ++   
Sbjct: 29  NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88

Query: 271 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGP 330
             +     L  L L +  +    G      L      L+IL+L   S     +       
Sbjct: 89  LRVLGISGLQELTLENLEVT---GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQ 145

Query: 331 LFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLI 390
                       L++L++   +        +       P L  LD+SDN     G R LI
Sbjct: 146 W-------LKPGLKVLSIAQAHSLNFSCEQVR----VFPALSTLDLSDNPEL--GERGLI 192

Query: 391 PYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 442
                       L  L L N  +     S +   L+  R     L ++ N+L
Sbjct: 193 SALCPLKFPT--LQVLALRNAGME--TPSGVCSALAAARVQLQGLDLSHNSL 240

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 30/117 (25%), Positives = 42/117 (35%), Gaps = 19/117 (16%)

Query: 278 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGP--LFSLG 335
           +L  L LR+  ++   G  V S+L  A   L  LDLS NS+           P  L SL 
Sbjct: 202 TLQVLALRNAGMETPSG--VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 336 A---------GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 383
                           L +L+L  N L      D   +   +P +  L +  N   D
Sbjct: 260 LSFTGLKQVPKGLPAKLSVLDLSYNRL------DRNPSPDELPQVGNLSLKGNPFLD 310

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.0 bits (114), Expect = 5e-06
 Identities = 40/303 (13%), Positives = 83/303 (27%), Gaps = 46/303 (15%)

Query: 165 RCLRLQNALCVEETCQLLRESKLQSLVLRWIR-----------FEEHVQALCKLLIQNSE 213
             + +             R   L+SL L+              +  +V      +  N  
Sbjct: 53  EHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLR 112

Query: 214 TLASLEFLHCKLSPSFVEGICRSLCSKRKR--IHKIENLSID-ISSFIENCPSSVVVEL- 269
            L S+ F    +S   ++ + ++     +   + K    + D + S + +C     + + 
Sbjct: 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLME 172

Query: 270 ------------VSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS 317
                               SL  L                 ++     SL  + +    
Sbjct: 173 ESSFSEKDGKWLHELAQHNTSLEVLNFYMTEF-AKISPKDLETIARNCRSLVSVKVGDFE 231

Query: 318 IGGWLSKYDRSGPLFSLGAG----------KSLQSLRLLNLRGNNLCKADARDLGSALVH 367
           I   +  +  +  L     G          K +  +    L    L      ++      
Sbjct: 232 ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPF 291

Query: 368 IPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLST 427
              +  LD+    +E +   +LI       ++C  L  L   N  +  RG+  L      
Sbjct: 292 AAQIRKLDLLYALLETEDHCTLI-------QKCPNLEVLETRNV-IGDRGLEVLAQYCKQ 343

Query: 428 LRR 430
           L+R
Sbjct: 344 LKR 346

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.2 bits (112), Expect = 8e-06
 Identities = 42/291 (14%), Positives = 91/291 (31%), Gaps = 32/291 (10%)

Query: 148 CDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRE-----SKLQSLVLRWIRFEEHVQ 202
              ++     +++ +     +L            +       ++++ L L +        
Sbjct: 251 GSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL---LET 307

Query: 203 ALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 262
                LIQ    L  LE  +  +    +E + +  C + KR+     +            
Sbjct: 308 EDHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQY-CKQLKRLR----IERGADEQGMEDE 361

Query: 263 SSVVVE--LVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 320
             +V +  L++     + L  + + +     +       S+     +L    L       
Sbjct: 362 EGLVSQRGLIALAQGCQELEYMAV-YVSDITNES---LESIGTYLKNLCDFRLVLLDREE 417

Query: 321 WLSKYDRSGPLFSLGAG-KSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN 379
            ++       + SL  G K L+      LR   L       +G    + PN+  + +   
Sbjct: 418 RITDLPLDNGVRSLLIGCKKLRRFAFY-LRQGGLTDLGLSYIGQ---YSPNVRWMLLGYV 473

Query: 380 TIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRR 430
              D+G+          S  C  L +L +  C  S R ++  +  L +LR 
Sbjct: 474 GESDEGLMEF-------SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRY 517

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 28/141 (19%)

Query: 306 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLG--S 363
             + +++++ N         D    L     G+ +Q    + +  NNL     +     +
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI---IYIGYNNL-----KTFPVET 324

Query: 364 ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG--RGVSQL 421
           +L  +  L +L+   N +E       +P F         L  L L   +++         
Sbjct: 325 SLQKMKKLGMLECLYNQLE-----GKLPAF----GSEIKLASLNLAYNQITEIPANFCGF 375

Query: 422 LDTLSTLRRPPTSLSIADNNL 442
            + +        +LS A N L
Sbjct: 376 TEQV-------ENLSFAHNKL 389

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 25/150 (16%)

Query: 272 FLSSGRSLCSLKLRHCHLDRDFGRMVFSSL---LEASSSLSILDLSGNSIGGWLSKYDRS 328
              S   + ++   +  +        F  L        ++S ++LS N I          
Sbjct: 397 DAKSVSVMSAIDFSYNEI-GSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-------- 447

Query: 329 GPLFSLGAGKSLQSLRLLNLRGNNLC---KADARDLGSALVHIPNLEILDISDNTIEDDG 385
              F      +   L  +NL GN L    K   +D      +   L  +D+  N      
Sbjct: 448 ---FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-----K 499

Query: 386 IRSLIPYFVQASERCNPLVELYLENCELSG 415
           +  L   F   +     LV + L     S 
Sbjct: 500 LTKLSDDFRATT--LPYLVGIDLSYNSFSK 527

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 34/150 (22%), Positives = 57/150 (38%), Gaps = 18/150 (12%)

Query: 235 RSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFG 294
             L + +    KIE L+ +  +       +V +  VS L     L  L+L    +     
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFG--- 85

Query: 295 RMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLC 354
                 L E   +L+ L+LSGN +    +       L  L   K L+ L+ L+L    + 
Sbjct: 86  --GLDMLAEKLPNLTHLNLSGNKLKDIST-------LEPL---KKLECLKSLDLFNCEVT 133

Query: 355 KADA-RDLGSALVHIPNLEILDISDNTIED 383
             +  R+  S    +P L  LD  D   ++
Sbjct: 134 NLNDYRE--SVFKLLPQLTYLDGYDREDQE 161

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 30/138 (21%)

Query: 278 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG 337
           ++  L L +C  +          L     +L  L L    +              S+   
Sbjct: 25  AVRELVLDNCKSNDG----KIEGLTAEFVNLEFLSLINVGLI-------------SVSNL 67

Query: 338 KSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED-DGIRSLIPYFVQA 396
             L  L+ L L  N +       L      +PNL  L++S N ++D   +  L       
Sbjct: 68  PKLPKLKKLELSENRIFGG----LDMLAEKLPNLTHLNLSGNKLKDISTLEPL------- 116

Query: 397 SERCNPLVELYLENCELS 414
            ++   L  L L NCE++
Sbjct: 117 -KKLECLKSLDLFNCEVT 133

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.0 bits (112), Expect = 7e-06
 Identities = 36/192 (18%), Positives = 61/192 (31%), Gaps = 51/192 (26%)

Query: 271 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSL---------------LEASSSLSILDLSG 315
           S L+   ++  L   H  +       V   L               L     L  +DLS 
Sbjct: 199 STLAIPIAVEELDASHNSI-NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSY 257

Query: 316 NSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILD 375
           N +                     +Q L  L +  N L       L      IP L++LD
Sbjct: 258 NELE-----------KIMYHPFVKMQRLERLYISNNRL-----VALNLYGQPIPTLKVLD 301

Query: 376 ISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL-LDTLSTLRRPPTS 434
           +S N +        +    +   + + L  LYL++  +       L L T  TL+    +
Sbjct: 302 LSHNHLLH------VE---RNQPQFDRLENLYLDHNSI-----VTLKLSTHHTLK----N 343

Query: 435 LSIADNNLGRFC 446
           L+++ N+     
Sbjct: 344 LTLSHNDWDCNS 355

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 37/166 (22%), Positives = 58/166 (34%), Gaps = 44/166 (26%)

Query: 277 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 336
            SL    + +  L          S L    ++  LD S NSI               +  
Sbjct: 186 PSLFHANVSYNLL----------STLAIPIAVEELDASHNSIN-------------VVRG 222

Query: 337 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 396
                 L +L L+ NNL      D    L++ P L  +D+S N +E       I Y    
Sbjct: 223 P-VNVELTILKLQHNNL-----TDTA-WLLNYPGLVEVDLSYNELEK------IMY--HP 267

Query: 397 SERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 442
             +   L  LY+ N  L    ++     + TL+     L ++ N+L
Sbjct: 268 FVKMQRLERLYISNNRLV--ALNLYGQPIPTLKV----LDLSHNHL 307

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 25/144 (17%), Positives = 46/144 (31%), Gaps = 28/144 (19%)

Query: 271 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGP 330
           + L S R +  L L    +  +     F+       ++  L +  N+I            
Sbjct: 63  ALLDSFRQVELLNLNDLQI-EEIDTYAFAYA----HTIQKLYMGFNAIR----------- 106

Query: 331 LFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLI 390
                  +++  L +L L  N+L             + P L  L +S+N +E       I
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNNNLER------I 156

Query: 391 PYFVQASERCNPLVELYLENCELS 414
                  +    L  L L +  L+
Sbjct: 157 E--DDTFQATTSLQNLQLSSNRLT 178

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 21/104 (20%)

Query: 277 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 336
            SL  LK+       +F   +F+ L     +L+ LDLS   +              S  A
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTEL----RNLTFLDLSQCQLEQ-----------LSPTA 489

Query: 337 GKSLQSLRLLNLRGNNLCKADARDL-GSALVHIPNLEILDISDN 379
             SL SL++LN+  N L     + +       + +L+ + +  N
Sbjct: 490 FNSLSSLQVLNMASNQL-----KSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 47/276 (17%), Positives = 82/276 (29%), Gaps = 54/276 (19%)

Query: 182 LRESKLQSLVLRWIRFEEHVQALCKLLIQNSE--TLASLEFLHCKLSPSFVEGICRSLCS 239
            +E +L  L LR      +V   C   +   E   L   EF +      F +     LC+
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 240 ---KRKRIHKIENLSIDISSFIENCPSSVVVEL----------VSFLSSGRSLCSLKLRH 286
              +  R+  ++    DI        +     L           S+    + L  +  + 
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 316

Query: 287 CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLL 346
                         L     SL  L  + N  G             +  +   L SL  L
Sbjct: 317 GQFP-------TLKL----KSLKRLTFTSNKGG-------------NAFSEVDLPSLEFL 352

Query: 347 NLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVEL 406
           +L  N L          +     +L+ LD+S N     G+ ++   F+   +    L  L
Sbjct: 353 DLSRNGLSFKG--CCSQSDFGTTSLKYLDLSFN-----GVITMSSNFLGLEQ----LEHL 401

Query: 407 YLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 442
             ++  L       +  +L  L      L I+  + 
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNL----IYLDISHTHT 433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 35/173 (20%), Positives = 56/173 (32%), Gaps = 32/173 (18%)

Query: 277 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 336
            S  +L L    L R  G   F S       L +LDLS   I                GA
Sbjct: 28  FSTKNLDLSFNPL-RHLGSYSFFSF----PELQVLDLSRCEIQT-----------IEDGA 71

Query: 337 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 396
            +SL  L  L L GN +          A   + +L+ L   +       + SL  + +  
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQKLVAVET-----NLASLENFPIGH 122

Query: 397 SERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCANS 449
            +    L EL + +  +    + +    L+ L      L ++ N +       
Sbjct: 123 LKT---LKELNVAHNLIQSFKLPEYFSNLTNLE----HLDLSSNKIQSIYCTD 168

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 33/172 (19%), Positives = 54/172 (31%), Gaps = 38/172 (22%)

Query: 277 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 336
             L +L L    + +      FS L    SSL  L     ++                  
Sbjct: 76  SHLSTLILTGNPI-QSLALGAFSGL----SSLQKLVAVETNLAS-----------LENFP 119

Query: 337 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED------DGIRSLI 390
              L++L+ LN+  N +       L     ++ NLE LD+S N I+         +  + 
Sbjct: 120 IGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 391 PYFVQASERCNP-------------LVELYLENCELSGRGVSQLLDTLSTLR 429
              +      NP             L +L L N   S   +   +  L+ L 
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 228

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.3 bits (108), Expect = 9e-06
 Identities = 19/137 (13%), Positives = 48/137 (35%), Gaps = 32/137 (23%)

Query: 306 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSAL 365
           +SL+ + L+  ++               L   +   +++ L +   +       +  + +
Sbjct: 44  NSLTYITLANINVT-------------DLTGIEYAHNIKDLTINNIHA-----TNY-NPI 84

Query: 366 VHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTL 425
             + NLE L I    +  D I +L             L  L + +       +++ ++TL
Sbjct: 85  SGLSNLERLRIMGKDVTSDKIPNL--------SGLTSLTLLDISHSAHDDSILTK-INTL 135

Query: 426 STLRRPPTSLSIADNNL 442
             +     S+ ++ N  
Sbjct: 136 PKV----NSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 21/143 (14%), Positives = 47/143 (32%), Gaps = 35/143 (24%)

Query: 302 LEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDL 361
           +E + ++  L ++                  +      L +L  L + G ++        
Sbjct: 62  IEYAHNIKDLTINNIHAT-------------NYNPISGLSNLERLRIMGKDVTSDKI--- 105

Query: 362 GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL 421
              L  + +L +LDIS +  +D  +  +             +  + L         ++ +
Sbjct: 106 -PNLSGLTSLTLLDISHSAHDDSILTKI--------NTLPKVNSIDLSYNGA----ITDI 152

Query: 422 --LDTLSTLRRPPTSLSIADNNL 442
             L TL  L     SL+I  + +
Sbjct: 153 MPLKTLPEL----KSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 31/146 (21%)

Query: 270 VSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSG 329
            + +S   +L  L++    +         S L    +SL++LD+S ++            
Sbjct: 81  YNPISGLSNLERLRIMGKDV-TSDKIPNLSGL----TSLTLLDISHSAHDDS-------- 127

Query: 330 PLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSL 389
               L    +L  +  ++L  N        D+   L  +P L+ L+I  + + D   R +
Sbjct: 128 ---ILTKINTLPKVNSIDLSYNGAIT----DI-MPLKTLPELKSLNIQFDGVHD--YRGI 177

Query: 390 IPYFVQASERCNPLVELYLENCELSG 415
                   E    L +LY  +  + G
Sbjct: 178 --------EDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 23/104 (22%)

Query: 340 LQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED-DGIRSLIPYFVQASE 398
           + SL  + L   N+      DL + + +  N++ L I++    + + I  L         
Sbjct: 43  MNSLTYITLANINV-----TDL-TGIEYAHNIKDLTINNIHATNYNPISGLS-------- 88

Query: 399 RCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 442
               L  L +   +++   +   L  L++L    T L I+ +  
Sbjct: 89  ---NLERLRIMGKDVTSDKIPN-LSGLTSL----TLLDISHSAH 124

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 27/170 (15%), Positives = 55/170 (32%), Gaps = 34/170 (20%)

Query: 277 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 336
             L  L++    L + +      S+     ++S L L                 L     
Sbjct: 174 TFLEELEIDASDL-QSYEPKSLKSI----QNVSHLILHMKQH-----------ILLLEIF 217

Query: 337 GKSLQSLRLLNLRGNNLCKADARDLGS----ALVHIPNLEILDISDNTIEDDGIRSLIPY 392
                S+  L LR  +L      +L +    +L+       + I+D ++       ++  
Sbjct: 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL-----FQVMKL 272

Query: 393 FVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 442
             Q S     L+EL     +L       + D L++L++    + +  N  
Sbjct: 273 LNQISG----LLELEFSRNQLKSVP-DGIFDRLTSLQK----IWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 28/172 (16%), Positives = 60/172 (34%), Gaps = 25/172 (14%)

Query: 271 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGP 330
           S  S    L  L++ +        R  F+ L    + L  L++  + +        +S  
Sbjct: 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGL----TFLEELEIDASDL--------QSYE 190

Query: 331 LFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLI 390
             SL   KS+Q++  L L                +    ++E L++ D  ++      L 
Sbjct: 191 PKSL---KSIQNVSHLILHMKQHILLLE----IFVDVTSSVECLELRDTDLDTFHFSEL- 242

Query: 391 PYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 442
                  E  + + +    N +++   + Q++  L+ +      L  + N L
Sbjct: 243 ----STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG-LLELEFSRNQL 289

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 34/137 (24%)

Query: 306 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSAL 365
           S L+ L++  N I               + A K L  L++LN+  N +      D+ S L
Sbjct: 243 SQLTWLEIGTNQIS-------------DINAVKDLTKLKMLNVGSNQI-----SDI-SVL 283

Query: 366 VHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTL 425
            ++  L  L +++N + ++ +  +             L  L+L    ++     + L +L
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDMEVI--------GGLTNLTTLFLSQNHITD---IRPLASL 332

Query: 426 STLRRPPTSLSIADNNL 442
           S +     S   A+  +
Sbjct: 333 SKM----DSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.8 bits (107), Expect = 4e-05
 Identities = 36/209 (17%), Positives = 74/209 (35%), Gaps = 47/209 (22%)

Query: 236 SLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGR 295
           +L +    I++I   + D++  I        V  V       S+  L +    +      
Sbjct: 4   TLATLPAPINQIFPDA-DLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKV------ 56

Query: 296 MVFSSL--LEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNL 353
              +S+  +E  ++L  L+L+GN I               +    +L  L  L +  N +
Sbjct: 57  ---ASIQGIEYLTNLEYLNLNGNQIT-------------DISPLSNLVKLTNLYIGTNKI 100

Query: 354 CKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCEL 413
                 D+ SAL ++ NL  L ++++ I D      I      ++    +  L L     
Sbjct: 101 -----TDI-SALQNLTNLRELYLNEDNISD------ISPLANLTK----MYSLNLGANHN 144

Query: 414 SGRGVSQLLDTLSTLRRPPTSLSIADNNL 442
                   L  ++ L      L++ ++ +
Sbjct: 145 L--SDLSPLSNMTGL----NYLTVTESKV 167

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 23/141 (16%), Positives = 49/141 (34%), Gaps = 35/141 (24%)

Query: 302 LEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDL 361
           L   + +  L+L  N     LS          L    ++  L  L +  + +     +D+
Sbjct: 128 LANLTKMYSLNLGANHNLSDLS---------PLS---NMTGLNYLTVTESKV-----KDV 170

Query: 362 GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL 421
            + + ++ +L  L ++ N IED      I      +     L        +++       
Sbjct: 171 -TPIANLTDLYSLSLNYNQIED------ISPLASLTS----LHYFTAYVNQITD---ITP 216

Query: 422 LDTLSTLRRPPTSLSIADNNL 442
           +  ++ L     SL I +N +
Sbjct: 217 VANMTRL----NSLKIGNNKI 233

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 36/137 (26%)

Query: 306 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSAL 365
           +SL       N I               +    ++  L  L +  N +      DL S L
Sbjct: 199 TSLHYFTAYVNQIT-------------DITPVANMTRLNSLKIGNNKI-----TDL-SPL 239

Query: 366 VHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTL 425
            ++  L  L+I  N I D      I       +    L  L + + ++S      +L+ L
Sbjct: 240 ANLSQLTWLEIGTNQISD------INAV----KDLTKLKMLNVGSNQISD---ISVLNNL 286

Query: 426 STLRRPPTSLSIADNNL 442
           S L     SL + +N L
Sbjct: 287 SQL----NSLFLNNNQL 299

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 26/199 (13%), Positives = 54/199 (27%), Gaps = 38/199 (19%)

Query: 268 ELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDR 327
            L     +G  +    + + +L+          +      L +LD   N     +   + 
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKM----VKLGLLDCVHNK----VRHLEA 590

Query: 328 SGPLFSL---------------GAGKSLQSLRLLNLRGNNLCKADARDL--GSALVHIPN 370
            G    L                       +  L    N L     + +        +  
Sbjct: 591 FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL-----KYIPNIFNAKSVYV 645

Query: 371 LEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRR 430
           +  +D S N I        I   +   +  N    + L   E+     ++L  T S +  
Sbjct: 646 MGSVDFSYNKIG--SEGRNISCSMDDYKGIN-ASTVTLSYNEIQKF-PTELFATGSPIST 701

Query: 431 PPTSLSIADNNLGRFCANS 449
               + +++N +     NS
Sbjct: 702 ----IILSNNLMTSIPENS 716

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 40/251 (15%), Positives = 72/251 (28%), Gaps = 42/251 (16%)

Query: 204 LCKLLIQNSETLASLEFLHCKLS--PSFVEGICRSLCS-KRKRIHKIENLSIDISSFIEN 260
             K+ +   + L   + L   ++  P        S  S K  +I  + N    IS  I+ 
Sbjct: 387 YKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQR 446

Query: 261 CPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEAS----SSLSILDLSGN 316
                   L     +        +     D +          E S      L+ ++L   
Sbjct: 447 LTK-----LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501

Query: 317 SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNL-----CKADARDLGSALVHIPNL 371
                L           L     L  L+ LN+  N        KAD   L       P +
Sbjct: 502 PNMTQLPD--------FLY---DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

Query: 372 EILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRP 431
           +I  +  N +E+    + +        +   L  L   + ++        L+   T  + 
Sbjct: 551 QIFYMGYNNLEEFPASASLQ-------KMVKLGLLDCVHNKVRH------LEAFGTNVK- 596

Query: 432 PTSLSIADNNL 442
            T L +  N +
Sbjct: 597 LTDLKLDYNQI 607

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 35/229 (15%), Positives = 71/229 (31%), Gaps = 43/229 (18%)

Query: 185 SKLQSLVLRWIRFEE-HVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 243
             + S+   + +         C +        +++   + ++   F   +  +       
Sbjct: 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATG------ 696

Query: 244 IHKIENLSI-DISS-FIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSL 301
                 +S   +S+  + + P + +        +   L ++ LR   L         ++L
Sbjct: 697 ----SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL 752

Query: 302 LEASSSLSILDLSGNSIGG---------WLSKYDRSGPLFSLGAGKS---------LQSL 343
                 LS +D+S N              L  +       + G               SL
Sbjct: 753 ----PYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808

Query: 344 RLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPY 392
             L +  N++ K D +         P L ILDI+DN      + S+ PY
Sbjct: 809 IQLQIGSNDIRKVDEKLT-------PQLYILDIADNPNISIDVTSVCPY 850

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 19/105 (18%)

Query: 278 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG 337
           SL  LK+       +F   +F+ L     +L+ LDLS   +              S  A 
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTEL----RNLTFLDLSQCQLEQ-----------LSPTAF 195

Query: 338 KSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIE 382
            SL SL++LN+  NN    D          + +L++LD S N I 
Sbjct: 196 NSLSSLQVLNMSHNNFFSLDT----FPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 31/165 (18%), Positives = 56/165 (33%), Gaps = 31/165 (18%)

Query: 278 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG 337
           S   L+L    L       VF  L    + L+ L LS N +         S       + 
Sbjct: 29  SATRLELESNKLQS-LPHGVFDKL----TQLTKLSLSSNGL---------SFKGCCSQSD 74

Query: 338 KSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQAS 397
               SL+ L+L  N +       + S  + +  LE LD   +      ++ +  +     
Sbjct: 75  FGTTSLKYLDLSFNGV-----ITMSSNFLGLEQLEHLDFQHS-----NLKQMSEF--SVF 122

Query: 398 ERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 442
                L+ L + +        + + + LS+L      L +A N+ 
Sbjct: 123 LSLRNLIYLDISHTHTRVAF-NGIFNGLSSLEV----LKMAGNSF 162

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 28/145 (19%)

Query: 299 SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADA 358
           SS       L  LD   +++            +       SL++L  L++   +   A  
Sbjct: 94  SSNFLGLEQLEHLDFQHSNLKQ----------MSEFSVFLSLRNLIYLDISHTHTRVAFN 143

Query: 359 RDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGV 418
                    + +LE+L ++ N+       + +P           L  L L  C+L    +
Sbjct: 144 G----IFNGLSSLEVLKMAGNSF----QENFLPD---IFTELRNLTFLDLSQCQL--EQL 190

Query: 419 SQ-LLDTLSTLRRPPTSLSIADNNL 442
           S    ++LS+L+     L+++ NN 
Sbjct: 191 SPTAFNSLSSLQV----LNMSHNNF 211

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 28/140 (20%), Positives = 47/140 (33%), Gaps = 30/140 (21%)

Query: 305 SSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG--KSLQSLRLLNLRGNNLCKADARDLG 362
            SS + L+L  N +              SL  G    L  L  L+L  N L         
Sbjct: 27  PSSATRLELESNKLQ-------------SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ- 72

Query: 363 SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLL 422
            +     +L+ LD+S N     G+ ++   F+   +    L  L  ++  L       + 
Sbjct: 73  -SDFGTTSLKYLDLSFN-----GVITMSSNFLGLEQ----LEHLDFQHSNLKQMSEFSVF 122

Query: 423 DTLSTLRRPPTSLSIADNNL 442
            +L  L      L I+  + 
Sbjct: 123 LSLRNLIY----LDISHTHT 138

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 37/191 (19%), Positives = 60/191 (31%), Gaps = 49/191 (25%)

Query: 271 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSL---------------LEASSSLSILDLSG 315
           S L+   ++  L   H  +       V   L               L     L  +DLS 
Sbjct: 205 STLAIPIAVEELDASHNSI-NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSY 263

Query: 316 NSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILD 375
           N +                     +Q L  L +  N L       L      IP L++LD
Sbjct: 264 NELEK-----------IMYHPFVKMQRLERLYISNNRL-----VALNLYGQPIPTLKVLD 307

Query: 376 ISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSL 435
           +S N +    +    P F +       L  LYL++  +     +  L T  TL+     L
Sbjct: 308 LSHNHLLH--VERNQPQFDR-------LENLYLDHNSIV----TLKLSTHHTLKN----L 350

Query: 436 SIADNNLGRFC 446
           +++ N+     
Sbjct: 351 TLSHNDWDCNS 361

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 37/166 (22%), Positives = 58/166 (34%), Gaps = 44/166 (26%)

Query: 277 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 336
            SL    + +  L          S L    ++  LD S NSI               +  
Sbjct: 192 PSLFHANVSYNLL----------STLAIPIAVEELDASHNSIN-------------VVRG 228

Query: 337 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 396
                 L +L L+ NNL      D    L++ P L  +D+S N +E       I Y    
Sbjct: 229 P-VNVELTILKLQHNNL-----TDTA-WLLNYPGLVEVDLSYNELEK------IMY--HP 273

Query: 397 SERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 442
             +   L  LY+ N  L    ++     + TL+     L ++ N+L
Sbjct: 274 FVKMQRLERLYISNNRLV--ALNLYGQPIPTLKV----LDLSHNHL 313

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 20/113 (17%)

Query: 271 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGP 330
           + L S R +  L L    +  +     F+       ++  L +  N+I            
Sbjct: 69  ALLDSFRQVELLNLNDLQI-EEIDTYAFAYA----HTIQKLYMGFNAIRY---------- 113

Query: 331 LFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 383
                  +++  L +L L  N+L             + P L  L +S+N +E 
Sbjct: 114 -LPPHVFQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNNNLER 161

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 17/124 (13%), Positives = 37/124 (29%), Gaps = 24/124 (19%)

Query: 273 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLF 332
            S G+   ++ L +  +      +         S +  LDL  N I   ++  + +    
Sbjct: 116 CSRGQGKKNIYLANNKI-TMLRDLDEGCR----SRVQYLDLKLNEIDT-VNFAELAASSD 169

Query: 333 SL-------------GAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN 379
           +L                     L+ L+L  N L       +G        +  + + +N
Sbjct: 170 TLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKL-----AFMGPEFQSAAGVTWISLRNN 224

Query: 380 TIED 383
            +  
Sbjct: 225 KLVL 228

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 35/147 (23%)

Query: 299 SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADA 358
             + +  +   I  ++ +S+                   +S  +++ L+L GN L +  A
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQ-----------ALASLRQSAWNVKELDLSGNPLSQISA 51

Query: 359 RDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGV 418
               + L     LE+L++S N + +             S     L  L L N  +     
Sbjct: 52  ----ADLAPFTKLELLNLSSNVLYE------TLDLESLST----LRTLDLNNNYVQ---- 93

Query: 419 SQLLDTLSTLRRPPTSLSIADNNLGRF 445
              L    ++     +L  A+NN+ R 
Sbjct: 94  --ELLVGPSIE----TLHAANNNISRV 114

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 38/248 (15%), Positives = 80/248 (32%), Gaps = 28/248 (11%)

Query: 185 SKLQSLVLRW--IRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 242
           S+L +L L +  ++  + V+ LC+           L+ L   +     +     L S  K
Sbjct: 289 SRLTTLNLSYATVQSYDLVKLLCQCP--------KLQRLW--VLDYIEDAGLEVLASTCK 338

Query: 243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLL 302
            + ++  +       +E   +     LVS       L S+ L  C    +       ++ 
Sbjct: 339 DLREL-RVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQMTNAA---LITIA 393

Query: 303 EASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLG 362
               +++   L                 +      +  + LR L+L G      D     
Sbjct: 394 RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG---LLTDK-VFE 449

Query: 363 SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLL 422
               +   +E+L ++     D G+  +          C+ L +L + +C    + +    
Sbjct: 450 YIGTYAKKMEMLSVAFAGDSDLGMHHV-------LSGCDSLRKLEIRDCPFGDKALLANA 502

Query: 423 DTLSTLRR 430
             L T+R 
Sbjct: 503 SKLETMRS 510

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 45/257 (17%), Positives = 74/257 (28%), Gaps = 47/257 (18%)

Query: 185 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEF--LHCKLSPSFVEGICRSLCSKRK 242
             L+ L LR    ++              +L SL    L  ++S S +E +         
Sbjct: 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC----- 210

Query: 243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLL 302
               +++L +             + +L + L     L  L       +     +     +
Sbjct: 211 --PNLKSLKL------NRAVP--LEKLATLLQRAPQLEELGTGGYTAEVR-PDVYSGLSV 259

Query: 303 EASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLG 362
             S    +  LSG              P            L  LNL         + DL 
Sbjct: 260 ALSGCKELRCLSGFWDAV-----PAYLPAV----YSVCSRLTTLNLSY---ATVQSYDLV 307

Query: 363 SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE---------L 413
             L   P L+ L + D  IED G+  L       +  C  L EL +   E         L
Sbjct: 308 KLLCQCPKLQRLWVLDY-IEDAGLEVL-------ASTCKDLRELRVFPSEPFVMEPNVAL 359

Query: 414 SGRGVSQLLDTLSTLRR 430
           + +G+  +      L  
Sbjct: 360 TEQGLVSVSMGCPKLES 376

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 35/166 (21%), Positives = 61/166 (36%), Gaps = 33/166 (19%)

Query: 277 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 336
            +L +L LR   L +     VF+ L    S+L+ LD+S N I            +     
Sbjct: 80  FNLRTLGLRSNRL-KLIPLGVFTGL----SNLTKLDISENKIV-----------ILLDYM 123

Query: 337 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 396
            + L +L+ L +  N+L     R    A   + +LE L +    +      + IP   +A
Sbjct: 124 FQDLYNLKSLEVGDNDLVYISHR----AFSGLNSLEQLTLEKCNL------TSIP--TEA 171

Query: 397 SERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 442
               + L+ L L +  ++          L  L+     L I+    
Sbjct: 172 LSHLHGLIVLRLRHLNINAIR-DYSFKRLYRLKV----LEISHWPY 212

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 24/110 (21%)

Query: 275 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSL 334
            G +L SL + HC+L      +    L      L  L+LS N I              ++
Sbjct: 222 YGLNLTSLSITHCNL-TAVPYLAVRHL----VYLRFLNLSYNPIS-------------TI 263

Query: 335 GAG--KSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIE 382
                  L  L+ + L G  L   +      A   +  L +L++S N + 
Sbjct: 264 EGSMLHELLRLQEIQLVGGQLAVVEPY----AFRGLNYLRVLNVSGNQLT 309

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.4 bits (104), Expect = 6e-05
 Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 34/176 (19%)

Query: 268 ELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDR 327
           E + + S+ +++  ++  +    R    +  S L    + + +L L+   +         
Sbjct: 403 ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-------- 454

Query: 328 SGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED-DGI 386
                 L   + L  +  L+L  N L     R L  AL  +  LE+L  SDN +E+ DG+
Sbjct: 455 -----VLCHLEQLLLVTHLDLSHNRL-----RALPPALAALRCLEVLQASDNALENVDGV 504

Query: 387 RSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 442
            +L             L EL L N  L      Q L +   L      L++  N+L
Sbjct: 505 ANL-----------PRLQELLLCNNRLQQSAAIQPLVSCPRLVL----LNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 44/308 (14%), Positives = 89/308 (28%), Gaps = 41/308 (13%)

Query: 75  WKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTIL 134
             +                   Q  +     G   +   +++         D    + + 
Sbjct: 293 RNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLF 352

Query: 135 NYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRW 194
                 ++              C++       L  +N  C+     L+R           
Sbjct: 353 RCELSVEKSTV----LQSELESCKELQE----LEPENKWCLLTIILLMRALDPLLYEKET 404

Query: 195 IRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLS--- 251
           +++   ++A+  +     + L S   L   +       + R L    K +  + +L    
Sbjct: 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADV-RVLHLAHKDLTVLCHLEQLL 463

Query: 252 ----IDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSS 307
               +D+S    N     +  L   L++ R L  L+     L+   G       +     
Sbjct: 464 LVTHLDLSH---NR----LRALPPALAALRCLEVLQASDNALENVDG-------VANLPR 509

Query: 308 LSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVH 367
           L  L L  N +           PL       S   L LLNL+GN+LC+ +          
Sbjct: 510 LQELLLCNNRLQQS----AAIQPL------VSCPRLVLLNLQGNSLCQEEGI-QERLAEM 558

Query: 368 IPNLEILD 375
           +P++  + 
Sbjct: 559 LPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 40.9 bits (95), Expect = 8e-04
 Identities = 34/188 (18%), Positives = 66/188 (35%), Gaps = 33/188 (17%)

Query: 204 LCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 263
             K  +Q   TL +++ +             RS       + K+E   + +         
Sbjct: 400 YEKETLQYFSTLKAVDPMRAAYLDD-----LRSKFLLENSVLKMEYADVRVLHLAHKD-- 452

Query: 264 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 323
              + ++  L     +  L L H  L            L A   L +L  S N++     
Sbjct: 453 ---LTVLCHLEQLLLVTHLDLSHNRLRA------LPPALAALRCLEVLQASDNAL----- 498

Query: 324 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTI-E 382
                    ++    +L  L+ L L  N L ++ A      LV  P L +L++  N++ +
Sbjct: 499 --------ENVDGVANLPRLQELLLCNNRLQQSAAIQ---PLVSCPRLVLLNLQGNSLCQ 547

Query: 383 DDGIRSLI 390
           ++GI+  +
Sbjct: 548 EEGIQERL 555

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.1 bits (104), Expect = 7e-05
 Identities = 27/153 (17%), Positives = 53/153 (34%), Gaps = 35/153 (22%)

Query: 298 FSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKAD 357
              + +  +   I  ++ +S+                   +S  +++ L+L GN L +  
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQ-----------ALASLRQSAWNVKELDLSGNPLSQIS 50

Query: 358 ARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG 417
           A    + L     LE+L++S N + +             S     L  L L N  +    
Sbjct: 51  A----ADLAPFTKLELLNLSSNVLYE------TLDLESLST----LRTLDLNNNYVQE-- 94

Query: 418 VSQLLDTLSTLRRPPTSLSIADNNLGRFCANSG 450
               L    ++     +L  A+NN+ R   + G
Sbjct: 95  ----LLVGPSIE----TLHAANNNISRVSCSRG 119

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 25/165 (15%), Positives = 50/165 (30%), Gaps = 28/165 (16%)

Query: 277 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 336
            SL  L L    +           L    ++L+ L LS NSI                G+
Sbjct: 192 PSLTELHLDGNKI-TKVDAASLKGL----NNLAKLGLSFNSISA-----------VDNGS 235

Query: 337 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 396
             +   LR L+L  N L       +   L     ++++ + +N I   G     P     
Sbjct: 236 LANTPHLRELHLNNNKL-----VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP--PGY 288

Query: 397 SERCNPLVELYLENCELSGRGVSQ-LLDTLSTLRRPPTSLSIADN 440
           + +      + L +  +    +       +        ++ + + 
Sbjct: 289 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA----AVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 29/138 (21%)

Query: 277 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 336
           ++L +L L +  +        F+ L      L  L LS N +               L  
Sbjct: 76  KNLHTLILINNKI-SKISPGAFAPL----VKLERLYLSKNQLK-------------ELPE 117

Query: 337 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 396
               ++L+ L +  N + K       S    +  + ++++  N ++  GI +       A
Sbjct: 118 K-MPKTLQELRVHENEITKVRK----SVFNGLNQMIVVELGTNPLKSSGIEN------GA 166

Query: 397 SERCNPLVELYLENCELS 414
            +    L  + + +  ++
Sbjct: 167 FQGMKKLSYIRIADTNIT 184

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 23/137 (16%), Positives = 48/137 (35%), Gaps = 36/137 (26%)

Query: 306 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSAL 365
           ++L+ L+L+ N +               +    +L++L  L L  NN+      D+ S +
Sbjct: 287 TALTNLELNENQLE-------------DISPISNLKNLTYLTLYFNNI-----SDI-SPV 327

Query: 366 VHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTL 425
             +  L+ L   +N + D      +            +  L   + ++S       L  L
Sbjct: 328 SSLTKLQRLFFYNNKVSD------VSSL----ANLTNINWLSAGHNQISD---LTPLANL 374

Query: 426 STLRRPPTSLSIADNNL 442
           + +    T L + D   
Sbjct: 375 TRI----TQLGLNDQAW 387

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 19/88 (21%)

Query: 302 LEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDL 361
           L   + L  L L  N I               +     L  L+ L L  N++      DL
Sbjct: 152 LSRLTKLDTLSLEDNQI-------------SDIVPLAGLTKLQNLYLSKNHI-----SDL 193

Query: 362 GSALVHIPNLEILDISDNTIEDDGIRSL 389
             AL  + NL++L++      +  I   
Sbjct: 194 -RALAGLKNLDVLELFSQECLNKPINHQ 220

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 40/179 (22%), Positives = 59/179 (32%), Gaps = 53/179 (29%)

Query: 274 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFS 333
                + +L +   +L         +SL      L  L++SGN              L S
Sbjct: 58  CLPAHITTLVIPDNNL---------TSLPALPPELRTLEVSGNQ-------------LTS 95

Query: 334 LGAG-KSLQSLRLLNLRGN-------NLCKADARD--LGSALVHIPNLEILDISDNTIED 383
           L      L  L + +            LCK       L S  V  P L+ L +SDN +  
Sbjct: 96  LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA- 154

Query: 384 DGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 442
               SL     +       L +L+  N +L     + L    S L      LS++DN L
Sbjct: 155 ----SLPALPSE-------LCKLWAYNNQL-----TSLPMLPSGL----QELSVSDNQL 193

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 29/113 (25%)

Query: 302 LEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDL 361
           L   S+L +L L  N I              ++     L +L+ L++    +      DL
Sbjct: 125 LAGLSNLQVLYLDLNQIT-------------NISPLAGLTNLQYLSIGNAQV-----SDL 166

Query: 362 GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELS 414
            + L ++  L  L   DN I D      I            L+E++L+N ++S
Sbjct: 167 -TPLANLSKLTTLKADDNKISD------ISPL----ASLPNLIEVHLKNNQIS 208

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 34/167 (20%), Positives = 60/167 (35%), Gaps = 41/167 (24%)

Query: 282 LKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG--KS 339
           L L H +L R       + L    ++L  L LS N +               + +     
Sbjct: 44  LDLSHNNLSRLRAEWTPTRL----TNLHSLLLSHNHLN-------------FISSEAFVP 86

Query: 340 LQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPY-FVQAS 397
           + +LR L+L  N+L       L       +  LE+L + +N I       +    F   +
Sbjct: 87  VPNLRYLDLSSNHL-----HTLDEFLFSDLQALEVLLLYNNHIV-----VVDRNAFEDMA 136

Query: 398 ERCNPLVELYLENCELSG--RGVSQLLDTLSTLRRPPTSLSIADNNL 442
           +    L +LYL   ++S     + +  + L  L      L ++ N L
Sbjct: 137 Q----LQKLYLSQNQISRFPVELIKDGNKLPKLML----LDLSSNKL 175

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 26/115 (22%), Positives = 38/115 (33%), Gaps = 26/115 (22%)

Query: 301 LLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARD 360
           L +    L  L      +              S+     L  L+ L L  N +       
Sbjct: 37  LTDEFEELEFLSTINVGLT-------------SIANLPKLNKLKKLELSDNRVSGG---- 79

Query: 361 LGSALVHIPNLEILDISDNTIED-DGIRSLIPYFVQASERCNPLVELYLENCELS 414
           L       PNL  L++S N I+D   I  L        ++   L  L L NCE++
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIKDLSTIEPL--------KKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 32/170 (18%), Positives = 61/170 (35%), Gaps = 35/170 (20%)

Query: 207 LLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVV 266
           L  +    +  L   + + +   +EG+            ++E LS            +V 
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFE-------ELEFLST----------INVG 53

Query: 267 VELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD 326
           +  ++ L     L  L+L    +           L E   +L+ L+LSGN I    +   
Sbjct: 54  LTSIANLPKLNKLKKLELSDNRVSG-----GLEVLAEKCPNLTHLNLSGNKIKDLST--- 105

Query: 327 RSGPLFSLGAGKSLQSLRLLNLRGNNLCKADA-RDLGSALVHIPNLEILD 375
               +  L   K L++L+ L+L    +   +  R+  +    +P L  LD
Sbjct: 106 ----IEPL---KKLENLKSLDLFNCEVTNLNDYRE--NVFKLLPQLTYLD 146

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 27/141 (19%), Positives = 48/141 (34%), Gaps = 37/141 (26%)

Query: 302 LEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDL 361
           L+  + L  L ++ N +                   K+L  +    L    L   + RD 
Sbjct: 81  LKDLTKLEELSVNRNRL-------------------KNLNGIPSACLSRLFLDNNELRDT 121

Query: 362 GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL 421
             +L+H+ NLEIL I +N ++   I  L           + L  L L   E++    +  
Sbjct: 122 -DSLIHLKNLEILSIRNNKLKS--IVML--------GFLSKLEVLDLHGNEIT---NTGG 167

Query: 422 LDTLSTLRRPPTSLSIADNNL 442
           L  L  +      + +     
Sbjct: 168 LTRLKKV----NWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 19/88 (21%)

Query: 302 LEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDL 361
           L    +L IL +  N +              S+     L  L +L+L GN +        
Sbjct: 124 LIHLKNLEILSIRNNKLK-------------SIVMLGFLSKLEVLDLHGNEITNT----- 165

Query: 362 GSALVHIPNLEILDISDNTIEDDGIRSL 389
              L  +  +  +D++     ++ ++  
Sbjct: 166 -GGLTRLKKVNWIDLTGQKCVNEPVKYQ 192

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 30/158 (18%), Positives = 46/158 (29%), Gaps = 37/158 (23%)

Query: 277 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 336
            SL  L L             F  L     +L  L+L   +I               +  
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGL----FNLKYLNLGMCNI-------------KDMPN 213

Query: 337 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN---TIEDDGIRSLIPYF 393
              L  L  L + GN+           +   + +L+ L + ++    IE +    L    
Sbjct: 214 LTPLVGLEELEMSGNHF----PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL---- 265

Query: 394 VQASERCNPLVELYLENCELSG--RGVSQLLDTLSTLR 429
                    LVEL L +  LS     +   L  L  L 
Sbjct: 266 -------ASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	450
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.95
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.94
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.94
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.94
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.94
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.94
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.92
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.89
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.88
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.88
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.87
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.86
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.86
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.85
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.85
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.84
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.84
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.84
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.83
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.83
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.83
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.83
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.83
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.83
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.82
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.82
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.82
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.82
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.82
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.82
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.82
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.82
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.81
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.81
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.81
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.8
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.8
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.8
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.8
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.8
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.8
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.8
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.79
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.79
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.79
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.79
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.79
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.79
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.79
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.79
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.79
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.79
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.78
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.78
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.78
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.77
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.77
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.77
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.77
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.77
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.77
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.76
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.76
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.76
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.76
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.76
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.76
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.76
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.75
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.75
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.75
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.75
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.75
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.74
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.74
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.74
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.74
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.74
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.73
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.73
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.72
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.72
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.72
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.72
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.71
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.71
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.7
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.7
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.7
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.69
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	99.68
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.67
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.67
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.66
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.66
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.65
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.65
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.64
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.62
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.62
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.61
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.6
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.6
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.6
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.6
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.59
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.58
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.57
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.55
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.55
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.54
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	99.54
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.54
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.53
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.51
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.51
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.51
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.5
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.5
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.5
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.5
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.49
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.47
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.45
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.43
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.42
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.42
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.41
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.39
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.38
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.38
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.35
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.35
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.32
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.32
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.31
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.3
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.3
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.28
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.24
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.23
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.17
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.17
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.14
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.12
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.1
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.03
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.89
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.8
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.69
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.67
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.62
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.43
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.2
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.11
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.97
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.8
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	95.78
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.37
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.36
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.32
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.28
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	92.51
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	91.46
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	90.55
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	86.98
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	85.78

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.95  E-value=1.1e-26  Score=227.30  Aligned_cols=266  Identities=17%  Similarity=0.136  Sum_probs=216.1

Q ss_pred             chhhcccccCcchhhh-----HhhhcCC-CccEEEeecccChHHHHHHHHHHHhc-CCCccEEEccCCCCChhHHHHHHH
Q 013056          163 YARCLRLQNALCVEET-----CQLLRES-KLQSLVLRWIRFEEHVQALCKLLIQN-SETLASLEFLHCKLSPSFVEGICR  235 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~-----~~l~~~~-~L~~L~Ls~n~~~~~~~~l~~~l~~~-~~~L~~L~Ls~n~l~~~~~~~l~~  235 (450)
                      .++.+++++|.+....     ..+.+++ +|++|+|++|.+.......+...+.. .++|++|+|++|.+++.++..++.
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            3566677777666544     4555777 99999999999766533333333344 389999999999999999998888


Q ss_pred             HHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCC-CCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEecc
Q 013056          236 SLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSG-RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLS  314 (450)
Q Consensus       236 ~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls  314 (450)
                      .+...   .++|++|++++|.+++.+..    .+...+..+ ++|++|+|++|.+++.++..++.++....++|++|+|+
T Consensus       103 ~l~~~---~~~L~~L~Ls~N~l~~~~~~----~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls  175 (362)
T 3goz_A          103 TLAAI---PFTITVLDLGWNDFSSKSSS----EFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR  175 (362)
T ss_dssp             HHHTS---CTTCCEEECCSSCGGGSCHH----HHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred             HHHhC---CCCccEEECcCCcCCcHHHH----HHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeec
Confidence            77763   37899999999999886554    667777774 69999999999999999999988876654599999999


Q ss_pred             CCCCCCcccccCcccHHHhhhCCCCC-CceeEEEccCCCCChhhHHHHHHHhhcC-CCCCEEecCCCCCChhhHHHHHHH
Q 013056          315 GNSIGGWLSKYDRSGPLFSLGAGKSL-QSLRLLNLRGNNLCKADARDLGSALVHI-PNLEILDISDNTIEDDGIRSLIPY  392 (450)
Q Consensus       315 ~n~l~~~~~~~~~~~l~~~l~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~N~l~~~g~~~l~~~  392 (450)
                      +|.+++.    +...+...+.   .+ ++|++|+|++|.|++.|+..++..+... ++|++|+|++|.|++.|+..+.  
T Consensus       176 ~n~l~~~----~~~~l~~~l~---~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~--  246 (362)
T 3goz_A          176 GNNLASK----NCAELAKFLA---SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK--  246 (362)
T ss_dssp             TSCGGGS----CHHHHHHHHH---TSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH--
T ss_pred             CCCCchh----hHHHHHHHHH---hCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH--
Confidence            9999853    3334455555   34 5899999999999999999999999884 5999999999999999988876  


Q ss_pred             HHhhcCCCCCcCEEEccCCC---CChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056          393 FVQASERCNPLVELYLENCE---LSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       393 l~~~l~~~~~L~~L~L~~n~---l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                        ..+..+++|++|+|++|.   ++..++..++..+.. .++|++||+++|+|++..+
T Consensus       247 --~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~-l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          247 --LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN-IQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             --HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTT-CCEEEEECTTSCBCCGGGC
T ss_pred             --HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhcc-CCceEEEecCCCcCCCcch
Confidence              457888999999999998   888888888888888 4559999999999998744

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.94  E-value=7.8e-26  Score=223.27  Aligned_cols=266  Identities=17%  Similarity=0.146  Sum_probs=207.6

Q ss_pred             chhhcccccCcchhh-----hHhhhcCCCccEEEeecccCh-------HHHHHHHHHHHhcCCCccEEEccCCCCChhHH
Q 013056          163 YARCLRLQNALCVEE-----TCQLLRESKLQSLVLRWIRFE-------EHVQALCKLLIQNSETLASLEFLHCKLSPSFV  230 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~-----~~~l~~~~~L~~L~Ls~n~~~-------~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~  230 (450)
                      .++.+++++|.+...     ...+..+++|++|+|++|.+.       ..+..+. ..+..+++|++|+|++|.|++.+.
T Consensus        33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL-QALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHH-HHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHH-HHHhhCCcccEEECCCCcCCHHHH
Confidence            456677777776553     233557899999999997432       2233332 334578999999999999999877


Q ss_pred             HHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCC---------CCCCEEecCCCCCChhHHHHHHHHH
Q 013056          231 EGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSG---------RSLCSLKLRHCHLDRDFGRMVFSSL  301 (450)
Q Consensus       231 ~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~---------~~L~~L~Ls~n~l~~~~~~~l~~~L  301 (450)
                      ..+...+..    +++|++|+|++|.++..+.    ..++..+..+         ++|++|+|++|.+++.+...++..+
T Consensus       112 ~~l~~~l~~----~~~L~~L~L~~n~l~~~~~----~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          112 EPLIDFLSK----HTPLEHLYLHNNGLGPQAG----AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             HHHHHHHHH----CTTCCEEECCSSCCHHHHH----HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             HHHHHHHHh----CCCCCEEECcCCCCCHHHH----HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            777766665    6999999999999976222    2455556556         9999999999999977888777765


Q ss_pred             hhCCCCCcEEeccCCCCCCcccccCcccHHH-hhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCC
Q 013056          302 LEASSSLSILDLSGNSIGGWLSKYDRSGPLF-SLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNT  380 (450)
Q Consensus       302 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~-~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~  380 (450)
                      .. +++|++|++++|.+++.    +...+.. .+.   .+++|+.|+|++|.|++.|+..++..+..+++|++|+|++|.
T Consensus       184 ~~-~~~L~~L~L~~n~l~~~----g~~~l~~~~l~---~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~  255 (386)
T 2ca6_A          184 QS-HRLLHTVKMVQNGIRPE----GIEHLLLEGLA---YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  255 (386)
T ss_dssp             HH-CTTCCEEECCSSCCCHH----HHHHHHHTTGG---GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             Hh-CCCcCEEECcCCCCCHh----HHHHHHHHHhh---cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence            44 68999999999999841    1111222 343   678999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056          381 IEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       381 l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                      |++.|+..+.+.+  ....+++|++|+|++|.|+..|+..++..+....++|++|++++|+|++.++
T Consensus       256 i~~~~~~~l~~~l--~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          256 LSARGAAAVVDAF--SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CCHHHHHHHHHHH--HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CchhhHHHHHHHH--hhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            9999988887532  1144799999999999999999999999884312459999999999998764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.94  E-value=7.2e-26  Score=228.61  Aligned_cols=263  Identities=21%  Similarity=0.235  Sum_probs=180.7

Q ss_pred             chhhcccccCcch-----hhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCC----CccEEEccCCCCChhHHHHH
Q 013056          163 YARCLRLQNALCV-----EETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSE----TLASLEFLHCKLSPSFVEGI  233 (450)
Q Consensus       163 ~l~~l~L~~~~~~-----~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~----~L~~L~Ls~n~l~~~~~~~l  233 (450)
                      .++.+++++|.+.     .++..+..+++|++|++++|.+......   .+...++    +|++|++++|.|++.+...+
T Consensus        29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~---~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l  105 (461)
T 1z7x_W           29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH---CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL  105 (461)
T ss_dssp             TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH---HHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHH---HHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence            3455566666554     2344555677788888877775543221   1123333    67788888887777776666


Q ss_pred             HHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhc-CCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEe
Q 013056          234 CRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLS-SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILD  312 (450)
Q Consensus       234 ~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~  312 (450)
                      ...+..    +++|++|++++|.+++.+.    ..+...+. ..++|++|++++|.+++.++..+...+.. +++|++|+
T Consensus       106 ~~~l~~----~~~L~~L~Ls~n~i~~~~~----~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~  176 (461)
T 1z7x_W          106 SSTLRT----LPTLQELHLSDNLLGDAGL----QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA-KPDFKELT  176 (461)
T ss_dssp             HHHTTS----CTTCCEEECCSSBCHHHHH----HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH-CTTCCEEE
T ss_pred             HHHHcc----CCceeEEECCCCcCchHHH----HHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhh-CCCCCEEE
Confidence            666655    4678888888777765221    13333322 35678888888888777776666665443 57888888


Q ss_pred             ccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHH
Q 013056          313 LSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPY  392 (450)
Q Consensus       313 Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~  392 (450)
                      +++|.+++.    +...++..+..  ..++|+.|++++|.+++.++..++..+..+++|++|++++|.+++.|+..+.+.
T Consensus       177 L~~n~i~~~----~~~~l~~~l~~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~  250 (461)
T 1z7x_W          177 VSNNDINEA----GVRVLCQGLKD--SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPG  250 (461)
T ss_dssp             CCSSBCHHH----HHHHHHHHHHH--SCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred             CcCCCcchH----HHHHHHHHHhc--CCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHH
Confidence            888877642    11222233321  235888999999999988888889888999999999999999999888888763


Q ss_pred             HHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056          393 FVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       393 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                         .+..+++|++|++++|.++..|+..++..+.. .++|++|++++|.|++.++
T Consensus       251 ---~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~  301 (461)
T 1z7x_W          251 ---LLHPSSRLRTLWIWECGITAKGCGDLCRVLRA-KESLKELSLAGNELGDEGA  301 (461)
T ss_dssp             ---HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CTTCCEEECTTCCCHHHHH
T ss_pred             ---HhcCCCCceEEECcCCCCCHHHHHHHHHHHhh-CCCcceEECCCCCCchHHH
Confidence               34457888999999999988888888888877 3458888888888876543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.94  E-value=1.2e-25  Score=221.93  Aligned_cols=232  Identities=22%  Similarity=0.214  Sum_probs=118.0

Q ss_pred             hcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc-----cCCCCeeEEEcCCCC
Q 013056          182 LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR-----KRIHKIENLSIDISS  256 (450)
Q Consensus       182 ~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~-----~~~~~L~~L~L~~n~  256 (450)
                      ..+++|++|+|++|.+.......+...+.++++|+.|+|++|.|++.++..+...+....     ...++|++|++++|.
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            455666666666665443211122222345556666666666665555555554433210     000456666666666


Q ss_pred             CCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhC
Q 013056          257 FIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA  336 (450)
Q Consensus       257 i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~  336 (450)
                      ++..+..    .++..+..+++|++|+|++|.+++.+...++...+..+++|++|+|++|.+++    .+...++..+. 
T Consensus       171 l~~~~~~----~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~----~g~~~l~~~l~-  241 (386)
T 2ca6_A          171 LENGSMK----EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH----LGSSALAIALK-  241 (386)
T ss_dssp             CTGGGHH----HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH----HHHHHHHHHGG-
T ss_pred             CCcHHHH----HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc----HHHHHHHHHHc-
Confidence            5532211    33345555566666666666665555554444222335566666666665542    11222334444 


Q ss_pred             CCCCCceeEEEccCCCCChhhHHHHHHHhhc--CCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCC
Q 013056          337 GKSLQSLRLLNLRGNNLCKADARDLGSALVH--IPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELS  414 (450)
Q Consensus       337 ~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~--~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~  414 (450)
                        .+++|+.|+|++|.|++.|+..++..+..  +++|++|+|++|.|++.|+..+...+   ...+++|++|++++|.++
T Consensus       242 --~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l---~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          242 --SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI---DEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             --GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH---HHHCTTCCEEECTTSBSC
T ss_pred             --cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH---HhcCCCceEEEccCCcCC
Confidence              33556666666666666555555555533  56666666666666665555554321   133456666666666666


Q ss_pred             hhH--HHHHHHHHhc
Q 013056          415 GRG--VSQLLDTLST  427 (450)
Q Consensus       415 ~~g--~~~l~~~l~~  427 (450)
                      ..+  +..+...+..
T Consensus       317 ~~~~~~~~l~~~l~~  331 (386)
T 2ca6_A          317 EEDDVVDEIREVFST  331 (386)
T ss_dssp             TTSHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHhhh
Confidence            555  3455555544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.94  E-value=8.1e-26  Score=228.23  Aligned_cols=265  Identities=24%  Similarity=0.256  Sum_probs=183.0

Q ss_pred             hhhcccccCcch-----hhhHhhhcCCCccEEEeecccChHH-HHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHH
Q 013056          164 ARCLRLQNALCV-----EETCQLLRESKLQSLVLRWIRFEEH-VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSL  237 (450)
Q Consensus       164 l~~l~L~~~~~~-----~~~~~l~~~~~L~~L~Ls~n~~~~~-~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L  237 (450)
                      ++.+++++|.+.     .++..+..+++|++|++++|.+... ...+...+....++|++|++++|.+++.++..+...+
T Consensus        87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  166 (461)
T 1z7x_W           87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL  166 (461)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred             eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence            556667776665     2345555677777777777775443 3333334444456677777777777777766666655


Q ss_pred             hccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhc-CCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCC
Q 013056          238 CSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLS-SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN  316 (450)
Q Consensus       238 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n  316 (450)
                      ..    +++|++|++++|.+++.+..    .+...+. ..++|++|++++|.+++.+...+...+. .+++|++|++++|
T Consensus       167 ~~----~~~L~~L~L~~n~i~~~~~~----~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n  237 (461)
T 1z7x_W          167 RA----KPDFKELTVSNNDINEAGVR----VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA-SKASLRELALGSN  237 (461)
T ss_dssp             HH----CTTCCEEECCSSBCHHHHHH----HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH-HCTTCCEEECCSS
T ss_pred             hh----CCCCCEEECcCCCcchHHHH----HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH-hCCCccEEeccCC
Confidence            55    46777777777776652211    2333332 3557777777777777766665655543 3577888888877


Q ss_pred             CCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhh
Q 013056          317 SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA  396 (450)
Q Consensus       317 ~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~  396 (450)
                      .+++.    +...++..+.  ..+++|++|++++|.+++.|+..++..+..+++|++|++++|.+++.|+..+...+   
T Consensus       238 ~l~~~----~~~~l~~~~~--~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l---  308 (461)
T 1z7x_W          238 KLGDV----GMAELCPGLL--HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL---  308 (461)
T ss_dssp             BCHHH----HHHHHHHHHT--STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH---
T ss_pred             cCChH----HHHHHHHHHh--cCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHh---
Confidence            76641    1122223322  14578999999999999988888888888899999999999999888888776522   


Q ss_pred             cCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056          397 SERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       397 l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                      ....++|++|++++|.+++.++..++..+.. .++|++|++++|.|++.++
T Consensus       309 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~  358 (461)
T 1z7x_W          309 LEPGCQLESLWVKSCSFTAACCSHFSSVLAQ-NRFLLELQISNNRLEDAGV  358 (461)
T ss_dssp             TSTTCCCCEEECTTSCCBGGGHHHHHHHHHH-CSSCCEEECCSSBCHHHHH
T ss_pred             ccCCccceeeEcCCCCCchHHHHHHHHHHhh-CCCccEEEccCCccccccH
Confidence            3344689999999999999988888888888 4559999999999987654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.94  E-value=7.1e-26  Score=221.66  Aligned_cols=258  Identities=19%  Similarity=0.161  Sum_probs=211.0

Q ss_pred             ccccCcchhhhHhhhcC-CCccEEEeecccChHHHHHHHHHHHhcCC-CccEEEccCCCCChhHHHHHHHHHhccccCCC
Q 013056          168 RLQNALCVEETCQLLRE-SKLQSLVLRWIRFEEHVQALCKLLIQNSE-TLASLEFLHCKLSPSFVEGICRSLCSKRKRIH  245 (450)
Q Consensus       168 ~L~~~~~~~~~~~l~~~-~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~-~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~  245 (450)
                      +++.+.+...+..+... ++|++|+|++|.+.......+...+.+++ +|++|+|++|.|++.++..++..+...   .+
T Consensus         4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~---~~   80 (362)
T 3goz_A            4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI---PA   80 (362)
T ss_dssp             ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS---CT
T ss_pred             ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc---CC
Confidence            45666666656666644 56999999999976654433444456777 899999999999999999998877764   48


Q ss_pred             CeeEEEcCCCCCCCCCchhhHHHHHHhhcCC-CCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccc
Q 013056          246 KIENLSIDISSFIENCPSSVVVELVSFLSSG-RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK  324 (450)
Q Consensus       246 ~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~  324 (450)
                      +|++|++++|.+++....    .+...+..+ ++|++|+|++|.+++.++..++..+....++|++|+|++|.+++    
T Consensus        81 ~L~~L~Ls~n~l~~~~~~----~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~----  152 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSD----ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI----  152 (362)
T ss_dssp             TCCEEECCSSCGGGSCHH----HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG----
T ss_pred             CccEEECcCCcCChHHHH----HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH----
Confidence            999999999999885544    677777787 89999999999999999988888765534799999999999984    


Q ss_pred             cCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCC-CCCEEecCCCCCChhhHHHHHHHHHhhcCC-CCC
Q 013056          325 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIP-NLEILDISDNTIEDDGIRSLIPYFVQASER-CNP  402 (450)
Q Consensus       325 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~-~~~  402 (450)
                      .+...++..+....  ++|++|+|++|+|++.+...+...+..++ +|++|||++|.|++.|+..+...    +.. .++
T Consensus       153 ~~~~~l~~~l~~~~--~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~----l~~~~~~  226 (362)
T 3goz_A          153 KSSDELIQILAAIP--ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI----FSSIPNH  226 (362)
T ss_dssp             SCHHHHHHHHHTSC--TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH----HHHSCTT
T ss_pred             HHHHHHHHHHhcCC--ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH----HhcCCCC
Confidence            44455667776431  48999999999999999999999999985 99999999999999999888754    333 369


Q ss_pred             cCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCC
Q 013056          403 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG  443 (450)
Q Consensus       403 L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~  443 (450)
                      |++|+|++|.|++.|+..+...+.. .++|++|++++|.++
T Consensus       227 L~~L~Ls~N~l~~~~~~~l~~~~~~-l~~L~~L~L~~n~l~  266 (362)
T 3goz_A          227 VVSLNLCLNCLHGPSLENLKLLKDS-LKHLQTVYLDYDIVK  266 (362)
T ss_dssp             CCEEECCSSCCCCCCHHHHHHTTTT-TTTCSEEEEEHHHHT
T ss_pred             ceEEECcCCCCCcHHHHHHHHHHhc-CCCccEEEeccCCcc
Confidence            9999999999999999988877777 455999999999843

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.92  E-value=3.8e-24  Score=206.92  Aligned_cols=232  Identities=17%  Similarity=0.199  Sum_probs=176.0

Q ss_pred             hhhcccccCcchhhhHhhhcCCCccEEEeecccChHH-HHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056          164 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEH-VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  242 (450)
Q Consensus       164 l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~-~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~  242 (450)
                      ++.+++.++.+...+..++++++|++|++++|.+... +..    .+..+++|++|++++|.+++..+..+..       
T Consensus        72 l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~l~~-------  140 (336)
T 2ast_B           72 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG----ILSQCSKLQNLSLEGLRLSDPIVNTLAK-------  140 (336)
T ss_dssp             CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHH----HHTTBCCCSEEECTTCBCCHHHHHHHTT-------
T ss_pred             ceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHH----HHhhCCCCCEEeCcCcccCHHHHHHHhc-------
Confidence            3344455555555455566789999999999985443 333    3678999999999999999888777654       


Q ss_pred             CCCCeeEEEcCCC-CCCCCCchhhHHHHHHhhcCCCCCCEEecCCC-CCChhHHHHHHHHHhhCCC-CCcEEeccCC--C
Q 013056          243 RIHKIENLSIDIS-SFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASS-SLSILDLSGN--S  317 (450)
Q Consensus       243 ~~~~L~~L~L~~n-~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~-~L~~L~Ls~n--~  317 (450)
                       +++|++|++++| .+++       ..++..+..+++|++|++++| .+++.+...+..    .++ +|++|++++|  .
T Consensus       141 -~~~L~~L~L~~~~~l~~-------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~----~l~~~L~~L~l~~~~~~  208 (336)
T 2ast_B          141 -NSNLVRLNLSGCSGFSE-------FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA----HVSETITQLNLSGYRKN  208 (336)
T ss_dssp             -CTTCSEEECTTCBSCCH-------HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH----HSCTTCCEEECCSCGGG
T ss_pred             -CCCCCEEECCCCCCCCH-------HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH----hcccCCCEEEeCCCccc
Confidence             699999999999 6765       136777888999999999999 998865444433    368 9999999999  4


Q ss_pred             CCCcccccCcccHHHhhhCCCCCCceeEEEccCCC-CChhhHHHHHHHhhcCCCCCEEecCCC-CCChhhHHHHHHHHHh
Q 013056          318 IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNN-LCKADARDLGSALVHIPNLEILDISDN-TIEDDGIRSLIPYFVQ  395 (450)
Q Consensus       318 l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~N-~l~~~g~~~l~~~l~~  395 (450)
                      +++       ..++..+.   .+++|+.|++++|. +++.    .+..+..+++|++|++++| .+++.++.        
T Consensus       209 ~~~-------~~l~~~~~---~~~~L~~L~l~~~~~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~--------  266 (336)
T 2ast_B          209 LQK-------SDLSTLVR---RCPNLVHLDLSDSVMLKND----CFQEFFQLNYLQHLSLSRCYDIIPETLL--------  266 (336)
T ss_dssp             SCH-------HHHHHHHH---HCTTCSEEECTTCTTCCGG----GGGGGGGCTTCCEEECTTCTTCCGGGGG--------
T ss_pred             CCH-------HHHHHHHh---hCCCCCEEeCCCCCcCCHH----HHHHHhCCCCCCEeeCCCCCCCCHHHHH--------
Confidence            552       12445555   56899999999998 7774    3456788999999999999 67765432        


Q ss_pred             hcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCccccc
Q 013056          396 ASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCAN  448 (450)
Q Consensus       396 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~~  448 (450)
                      .+..+++|++|++++| +++.++..+...       ++.|++++|.+++..|.
T Consensus       267 ~l~~~~~L~~L~l~~~-i~~~~~~~l~~~-------l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          267 ELGEIPTLKTLQVFGI-VPDGTLQLLKEA-------LPHLQINCSHFTTIARP  311 (336)
T ss_dssp             GGGGCTTCCEEECTTS-SCTTCHHHHHHH-------STTSEESCCCSCCTTCS
T ss_pred             HHhcCCCCCEEeccCc-cCHHHHHHHHhh-------CcceEEecccCccccCC
Confidence            3556799999999999 888877666533       55567899999987764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.89  E-value=1.6e-24  Score=232.51  Aligned_cols=244  Identities=22%  Similarity=0.231  Sum_probs=163.0

Q ss_pred             hhcccccCcch-hhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccC
Q 013056          165 RCLRLQNALCV-EETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR  243 (450)
Q Consensus       165 ~~l~L~~~~~~-~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~  243 (450)
                      +.+++++|.+. .++..+.++++|+.|++++|.+...++..    +..+++|+.|++++|.+++..+..+..        
T Consensus       421 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~p~~l~~--------  488 (768)
T 3rgz_A          421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE----LMYVKTLETLILDFNDLTGEIPSGLSN--------  488 (768)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG----GGGCTTCCEEECCSSCCCSCCCGGGGG--------
T ss_pred             CEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH----HcCCCCceEEEecCCcccCcCCHHHhc--------
Confidence            33444444443 23333444555555555555533222211    345556666666666655443333322        


Q ss_pred             CCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccc
Q 013056          244 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS  323 (450)
Q Consensus       244 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~  323 (450)
                      +++|++|++++|++++        .++..++.+++|++|+|++|++++..+..+     ..+++|++|++++|.+.+..|
T Consensus       489 l~~L~~L~L~~N~l~~--------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~g~ip  555 (768)
T 3rgz_A          489 CTNLNWISLSNNRLTG--------EIPKWIGRLENLAILKLSNNSFSGNIPAEL-----GDCRSLIWLDLNTNLFNGTIP  555 (768)
T ss_dssp             CTTCCEEECCSSCCCS--------CCCGGGGGCTTCCEEECCSSCCEEECCGGG-----GGCTTCCEEECCSSEEESBCC
T ss_pred             CCCCCEEEccCCccCC--------cCChHHhcCCCCCEEECCCCcccCcCCHHH-----cCCCCCCEEECCCCccCCcCC
Confidence            5667777777777765        455566677777778887777776665544     346788888888887765544


Q ss_pred             ccCcccH--------------------------------------HHhh---------------------hCCCCCCcee
Q 013056          324 KYDRSGP--------------------------------------LFSL---------------------GAGKSLQSLR  344 (450)
Q Consensus       324 ~~~~~~l--------------------------------------~~~l---------------------~~~~~l~~L~  344 (450)
                      .......                                      +..+                     ..+..+++|+
T Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~  635 (768)
T 3rgz_A          556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM  635 (768)
T ss_dssp             GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred             hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence            2111000                                      0000                     0123457899


Q ss_pred             EEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHH
Q 013056          345 LLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDT  424 (450)
Q Consensus       345 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~  424 (450)
                      .|+|++|+++.    .+|..++.+++|+.|+|++|+++..     +|   ..++.+++|+.|||++|+++..    ++..
T Consensus       636 ~LdLs~N~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~-----ip---~~l~~L~~L~~LdLs~N~l~g~----ip~~  699 (768)
T 3rgz_A          636 FLDMSYNMLSG----YIPKEIGSMPYLFILNLGHNDISGS-----IP---DEVGDLRGLNILDLSSNKLDGR----IPQA  699 (768)
T ss_dssp             EEECCSSCCBS----CCCGGGGGCTTCCEEECCSSCCCSC-----CC---GGGGGCTTCCEEECCSSCCEEC----CCGG
T ss_pred             EEECcCCcccc----cCCHHHhccccCCEEeCcCCccCCC-----CC---hHHhCCCCCCEEECCCCcccCc----CChH
Confidence            99999999987    5899999999999999999999864     66   7788899999999999999976    7888


Q ss_pred             HhcCCCCCcEEECcCCCCCcccccCC
Q 013056          425 LSTLRRPPTSLSIADNNLGRFCANSG  450 (450)
Q Consensus       425 l~~l~~~L~~L~L~~N~l~~~~~~~~  450 (450)
                      +..+.. |++|++++|++++.+|..|
T Consensus       700 l~~l~~-L~~L~ls~N~l~g~iP~~~  724 (768)
T 3rgz_A          700 MSALTM-LTEIDLSNNNLSGPIPEMG  724 (768)
T ss_dssp             GGGCCC-CSEEECCSSEEEEECCSSS
T ss_pred             HhCCCC-CCEEECcCCcccccCCCch
Confidence            888654 9999999999999999764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.88  E-value=2e-22  Score=197.20  Aligned_cols=135  Identities=23%  Similarity=0.171  Sum_probs=68.7

Q ss_pred             CCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhh
Q 013056          278 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKAD  357 (450)
Q Consensus       278 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~  357 (450)
                      +|++|+|++|.+++.++..++..+....++|++|+|++|.+++    .++..++..+.   .+++|++|+|++|.|++.|
T Consensus       127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~----~~~~~l~~~L~---~~~~L~~L~Ls~N~l~~~g  199 (372)
T 3un9_A          127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTA----AGVAVLMEGLA---GNTSVTHLSLLHTGLGDEG  199 (372)
T ss_dssp             TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHH----HHHHHHHHHHH---TCSSCCEEECTTSSCHHHH
T ss_pred             hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCCh----HHHHHHHHHHh---cCCCcCEEeCCCCCCCcHH
Confidence            4455555555555555555555444444555555555555542    22223333333   2344555555555555555


Q ss_pred             HHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHH
Q 013056          358 ARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLD  423 (450)
Q Consensus       358 ~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~  423 (450)
                      +..++.++..+++|++|+|++|.|++.|+..++.    .+..+++|++|+|++|.|++.|+..+.+
T Consensus       200 ~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~----~L~~~~~L~~L~Ls~N~i~~~g~~~L~~  261 (372)
T 3un9_A          200 LELLAAQLDRNRQLQELNVAYNGAGDTAALALAR----AAREHPSLELLHLYFNELSSEGRQVLRD  261 (372)
T ss_dssp             HHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH----HHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH----HHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence            5555555555555555555555555555555542    2333455555555555555555555444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.88  E-value=9.2e-25  Score=209.35  Aligned_cols=232  Identities=18%  Similarity=0.163  Sum_probs=168.4

Q ss_pred             chhhcccccCcch---hhhHhhhcCCCccEEEeec-ccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHh
Q 013056          163 YARCLRLQNALCV---EETCQLLRESKLQSLVLRW-IRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLC  238 (450)
Q Consensus       163 ~l~~l~L~~~~~~---~~~~~l~~~~~L~~L~Ls~-n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  238 (450)
                      .++.++++++.+.   .++..+.++++|++|++++ |.+...++..    +.++++|++|++++|.++...+..+..   
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~p~~~~~---  123 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA----IAKLTQLHYLYITHTNVSGAIPDFLSQ---  123 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG----GGGCTTCSEEEEEEECCEEECCGGGGG---
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh----HhcCCCCCEEECcCCeeCCcCCHHHhC---
Confidence            4555666666665   3566777888889999884 6644333222    567888899999888887555544433   


Q ss_pred             ccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCC-CCcEEeccCCC
Q 013056          239 SKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASS-SLSILDLSGNS  317 (450)
Q Consensus       239 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~-~L~~L~Ls~n~  317 (450)
                           +++|++|++++|.+++        .++..+..+++|++|++++|.+++..+..+     ..++ +|++|++++|.
T Consensus       124 -----l~~L~~L~Ls~N~l~~--------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-----~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          124 -----IKTLVTLDFSYNALSG--------TLPPSISSLPNLVGITFDGNRISGAIPDSY-----GSFSKLFTSMTISRNR  185 (313)
T ss_dssp             -----CTTCCEEECCSSEEES--------CCCGGGGGCTTCCEEECCSSCCEEECCGGG-----GCCCTTCCEEECCSSE
T ss_pred             -----CCCCCEEeCCCCccCC--------cCChHHhcCCCCCeEECcCCcccCcCCHHH-----hhhhhcCcEEECcCCe
Confidence                 6888889998888876        455667788889999998888876566554     3355 88889998888


Q ss_pred             CCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhc
Q 013056          318 IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQAS  397 (450)
Q Consensus       318 l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l  397 (450)
                      +++..+        ..+..   +. |+.|++++|.++.    .++..+..+++|+.|+|++|.++..     .    ..+
T Consensus       186 l~~~~~--------~~~~~---l~-L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~-----~----~~~  240 (313)
T 1ogq_A          186 LTGKIP--------PTFAN---LN-LAFVDLSRNMLEG----DASVLFGSDKNTQKIHLAKNSLAFD-----L----GKV  240 (313)
T ss_dssp             EEEECC--------GGGGG---CC-CSEEECCSSEEEE----CCGGGCCTTSCCSEEECCSSEECCB-----G----GGC
T ss_pred             eeccCC--------hHHhC---Cc-ccEEECcCCcccC----cCCHHHhcCCCCCEEECCCCceeee-----c----Ccc
Confidence            876544        55553   34 8888888888876    3566778888888888888888753     3    236


Q ss_pred             CCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccccC
Q 013056          398 ERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCANS  449 (450)
Q Consensus       398 ~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~~~  449 (450)
                      ..+++|++|+|++|.|+..    ++..+..+. +|++|++++|+|++.+|..
T Consensus       241 ~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~-~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          241 GLSKNLNGLDLRNNRIYGT----LPQGLTQLK-FLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             CCCTTCCEEECCSSCCEEC----CCGGGGGCT-TCCEEECCSSEEEEECCCS
T ss_pred             cccCCCCEEECcCCcccCc----CChHHhcCc-CCCEEECcCCcccccCCCC
Confidence            6778888888888888754    566677744 4888888888888777753

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.87  E-value=8.4e-23  Score=205.78  Aligned_cols=248  Identities=18%  Similarity=0.144  Sum_probs=137.8

Q ss_pred             chhhcccccCcchhh-hHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056          163 YARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  241 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~-~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~  241 (450)
                      .++.+++++|.+..+ +..+.++++|++|++++|.+......  ...+.++++|++|++++|.++...+..+...     
T Consensus        80 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-----  152 (455)
T 3v47_A           80 SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS--GNFFKPLTSLEMLVLRDNNIKKIQPASFFLN-----  152 (455)
T ss_dssp             TCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHH--SSTTTTCTTCCEEECCSSBCCSCCCCGGGGG-----
T ss_pred             cCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccC--cccccCcccCCEEECCCCccCccCcccccCC-----
Confidence            455666666666554 34455667777777777765432211  1113456677777777776665433221111     


Q ss_pred             cCCCCeeEEEcCCCCCCCCCchhh--------------------------HHHHHHhhcCCCCCCEEecCCCCCChhHHH
Q 013056          242 KRIHKIENLSIDISSFIENCPSSV--------------------------VVELVSFLSSGRSLCSLKLRHCHLDRDFGR  295 (450)
Q Consensus       242 ~~~~~L~~L~L~~n~i~~~~~~~~--------------------------~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  295 (450)
                        +++|++|++++|.++......+                          .......+..+++|++|++++|.+++..+.
T Consensus       153 --l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  230 (455)
T 3v47_A          153 --MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK  230 (455)
T ss_dssp             --CTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH
T ss_pred             --CCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh
Confidence              4666666666666555322211                          111111223446778888888877776666


Q ss_pred             HHHHHH----------------------------------------------------------hhCCCCCcEEeccCCC
Q 013056          296 MVFSSL----------------------------------------------------------LEASSSLSILDLSGNS  317 (450)
Q Consensus       296 ~l~~~L----------------------------------------------------------~~~~~~L~~L~Ls~n~  317 (450)
                      .+...+                                                          +..+++|++|++++|.
T Consensus       231 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  310 (455)
T 3v47_A          231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE  310 (455)
T ss_dssp             HHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             hhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc
Confidence            665431                                                          1223444444444444


Q ss_pred             CCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhc
Q 013056          318 IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQAS  397 (450)
Q Consensus       318 l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l  397 (450)
                      +++..+        ..   +..+++|++|+|++|.++.    ..+..+..+++|++|+|++|++++.     .|   ..+
T Consensus       311 l~~~~~--------~~---~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~---~~~  367 (455)
T 3v47_A          311 INKIDD--------NA---FWGLTHLLKLNLSQNFLGS----IDSRMFENLDKLEVLDLSYNHIRAL-----GD---QSF  367 (455)
T ss_dssp             CCEECT--------TT---TTTCTTCCEEECCSSCCCE----ECGGGGTTCTTCCEEECCSSCCCEE-----CT---TTT
T ss_pred             ccccCh--------hH---hcCcccCCEEECCCCccCC----cChhHhcCcccCCEEECCCCccccc-----Ch---hhc
Confidence            443222        22   2245667777777776665    2345566677777777777777652     22   456


Q ss_pred             CCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056          398 ERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       398 ~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                      ..+++|++|+|++|+|+..    .+..+..+ ++|++|++++|++++..|
T Consensus       368 ~~l~~L~~L~L~~N~l~~~----~~~~~~~l-~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          368 LGLPNLKELALDTNQLKSV----PDGIFDRL-TSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TTCTTCCEEECCSSCCSCC----CTTTTTTC-TTCCEEECCSSCBCCCTT
T ss_pred             cccccccEEECCCCccccC----CHhHhccC-CcccEEEccCCCcccCCC
Confidence            6677777777777777763    12233443 337777777777777665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.86  E-value=5.4e-21  Score=187.08  Aligned_cols=209  Identities=19%  Similarity=0.216  Sum_probs=155.5

Q ss_pred             CCccEEEeecccChHH-HHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCch
Q 013056          185 SKLQSLVLRWIRFEEH-VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS  263 (450)
Q Consensus       185 ~~L~~L~Ls~n~~~~~-~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~  263 (450)
                      ++|+.|+|++|.+... +..+...+....++|++|+|++|.|++.++..++..+       .+|++|+|++|.+++.+..
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L-------~~L~~L~Ls~n~l~~~~~~  144 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVF-------LRARKLGLQLNSLGPEACK  144 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHH-------HTEEEEECCSSCCCHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHH-------HhccHhhcCCCCCCHHHHH
Confidence            3466777777775544 3333333343446899999999999888888887764       4688999999988773333


Q ss_pred             hhHHHHHHhhc-CCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCc
Q 013056          264 SVVVELVSFLS-SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS  342 (450)
Q Consensus       264 ~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~  342 (450)
                          .+...+. .+++|++|+|++|.+++.+...++.++.. +++|++|+|++|.+++    .+...++..+.   .+++
T Consensus       145 ----~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~-~~~L~~L~Ls~N~l~~----~g~~~L~~~L~---~~~~  212 (372)
T 3un9_A          145 ----DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG-NTSVTHLSLLHTGLGD----EGLELLAAQLD---RNRQ  212 (372)
T ss_dssp             ----HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT-CSSCCEEECTTSSCHH----HHHHHHHHHGG---GCSC
T ss_pred             ----HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc-CCCcCEEeCCCCCCCc----HHHHHHHHHHh---cCCC
Confidence                4555553 57889999999999998888888887754 5889999999999884    33344556666   4478


Q ss_pred             eeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCC-CCcCEEE--ccCCCCChh
Q 013056          343 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERC-NPLVELY--LENCELSGR  416 (450)
Q Consensus       343 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~-~~L~~L~--L~~n~l~~~  416 (450)
                      |++|+|++|.|++.|+..++.++..+++|++|||++|.|++.|+..+..    ..... +.|+.+.  +..|.+++.
T Consensus       213 L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~----~~~~~~~~L~~l~~ll~~~~~~~~  285 (372)
T 3un9_A          213 LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD----LGGAAEGGARVVVSLTEGTAVSEY  285 (372)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH----CC------CEEECCCC----CHHH
T ss_pred             cCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH----HhcCCCccchhhHhhhcCCccCHH
Confidence            9999999999999999999999999999999999999999999998863    22221 2388888  888888765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.86  E-value=2.5e-23  Score=223.19  Aligned_cols=233  Identities=24%  Similarity=0.273  Sum_probs=174.8

Q ss_pred             chhhcccccCcch-hhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056          163 YARCLRLQNALCV-EETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  241 (450)
Q Consensus       163 ~l~~l~L~~~~~~-~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~  241 (450)
                      .++.+++.+|.+. .++..+.++++|++|++++|.+....+..    +.++++|+.|++++|.+++..+..+..      
T Consensus       395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~L~~n~l~~~~p~~~~~------  464 (768)
T 3rgz_A          395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS----LGSLSKLRDLKLWLNMLEGEIPQELMY------  464 (768)
T ss_dssp             CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG----GGGCTTCCEEECCSSCCCSCCCGGGGG------
T ss_pred             CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH----HhcCCCCCEEECCCCcccCcCCHHHcC------
Confidence            3566667777665 35556667888888888888755333222    567788888888888887655554443      


Q ss_pred             cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCc
Q 013056          242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW  321 (450)
Q Consensus       242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~  321 (450)
                        +++|++|++++|.+++        .++..+..+++|++|+|++|++++..+..+     ..+++|++|+|++|.+.+.
T Consensus       465 --l~~L~~L~L~~N~l~~--------~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~  529 (768)
T 3rgz_A          465 --VKTLETLILDFNDLTG--------EIPSGLSNCTNLNWISLSNNRLTGEIPKWI-----GRLENLAILKLSNNSFSGN  529 (768)
T ss_dssp             --CTTCCEEECCSSCCCS--------CCCGGGGGCTTCCEEECCSSCCCSCCCGGG-----GGCTTCCEEECCSSCCEEE
T ss_pred             --CCCceEEEecCCcccC--------cCCHHHhcCCCCCEEEccCCccCCcCChHH-----hcCCCCCEEECCCCcccCc
Confidence              6888888888888887        456667788889999999888887666654     3478899999999988875


Q ss_pred             ccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHH-------------------------------------
Q 013056          322 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSA-------------------------------------  364 (450)
Q Consensus       322 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~-------------------------------------  364 (450)
                      .|        ..++   .+++|+.|++++|.++.    .+|..                                     
T Consensus       530 ~p--------~~l~---~l~~L~~L~Ls~N~l~g----~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  594 (768)
T 3rgz_A          530 IP--------AELG---DCRSLIWLDLNTNLFNG----TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL  594 (768)
T ss_dssp             CC--------GGGG---GCTTCCEEECCSSEEES----BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred             CC--------HHHc---CCCCCCEEECCCCccCC----cCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence            55        5555   56889999999987753    13322                                     


Q ss_pred             ---------------------------------hhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCC
Q 013056          365 ---------------------------------LVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENC  411 (450)
Q Consensus       365 ---------------------------------l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n  411 (450)
                                                       +..+++|+.|||++|+++..     +|   ..++.++.|+.|+|++|
T Consensus       595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~-----ip---~~l~~l~~L~~L~Ls~N  666 (768)
T 3rgz_A          595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY-----IP---KEIGSMPYLFILNLGHN  666 (768)
T ss_dssp             ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSC-----CC---GGGGGCTTCCEEECCSS
T ss_pred             ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccccc-----CC---HHHhccccCCEEeCcCC
Confidence                                             33456788999999998764     66   67888899999999999


Q ss_pred             CCChhHHHHHHHHHhcCCCCCcEEECcCCCCCccccc
Q 013056          412 ELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCAN  448 (450)
Q Consensus       412 ~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~~  448 (450)
                      .++..    ++..+..+.. |++|||++|++++.+|.
T Consensus       667 ~l~g~----ip~~l~~L~~-L~~LdLs~N~l~g~ip~  698 (768)
T 3rgz_A          667 DISGS----IPDEVGDLRG-LNILDLSSNKLDGRIPQ  698 (768)
T ss_dssp             CCCSC----CCGGGGGCTT-CCEEECCSSCCEECCCG
T ss_pred             ccCCC----CChHHhCCCC-CCEEECCCCcccCcCCh
Confidence            99875    7888888644 99999999999988875

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.85  E-value=8.7e-22  Score=198.37  Aligned_cols=116  Identities=16%  Similarity=0.179  Sum_probs=66.2

Q ss_pred             chhhcccccCcch-hh-hHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHH--HHHHHh
Q 013056          163 YARCLRLQNALCV-EE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEG--ICRSLC  238 (450)
Q Consensus       163 ~l~~l~L~~~~~~-~~-~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~--l~~~L~  238 (450)
                      .++.++++++... .+ +..+.++++|++|++++|.+....+..    +.++++|++|++++|.+++..+..  +..   
T Consensus        55 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~---  127 (455)
T 3v47_A           55 DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA----FNGLANLEVLTLTQCNLDGAVLSGNFFKP---  127 (455)
T ss_dssp             TCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTT----TTTCTTCCEEECTTSCCBTHHHHSSTTTT---
T ss_pred             cccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhh----ccCcccCCEEeCCCCCCCccccCcccccC---
Confidence            4455666666553 22 233446677777777777644332221    456677777777777776544332  221   


Q ss_pred             ccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHH
Q 013056          239 SKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMV  297 (450)
Q Consensus       239 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l  297 (450)
                           +++|++|++++|.++.....       ..+..+++|++|++++|.+++..+..+
T Consensus       128 -----l~~L~~L~L~~n~l~~~~~~-------~~~~~l~~L~~L~L~~n~l~~~~~~~l  174 (455)
T 3v47_A          128 -----LTSLEMLVLRDNNIKKIQPA-------SFFLNMRRFHVLDLTFNKVKSICEEDL  174 (455)
T ss_dssp             -----CTTCCEEECCSSBCCSCCCC-------GGGGGCTTCCEEECTTCCBSCCCTTTS
T ss_pred             -----cccCCEEECCCCccCccCcc-------cccCCCCcccEEeCCCCcccccChhhh
Confidence                 56677777777777662111       125566777777777777666444433

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.85  E-value=4.9e-22  Score=187.70  Aligned_cols=206  Identities=20%  Similarity=0.198  Sum_probs=112.8

Q ss_pred             CCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCC-CCCCCch
Q 013056          185 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS-FIENCPS  263 (450)
Q Consensus       185 ~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~-i~~~~~~  263 (450)
                      ++|++|++++|.+.......    +..+++|++|++++|.++...+..+..        +++|++|++++|. +..    
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~~l~~----   95 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAAS----FRACRNLTILWLHSNVLARIDAAAFTG--------LALLEQLDLSDNAQLRS----   95 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTTT--------CTTCCEEECCSCTTCCC----
T ss_pred             CCceEEEeeCCcCCccCHHH----cccCCCCCEEECCCCccceeCHhhcCC--------ccCCCEEeCCCCCCccc----
Confidence            45666666666644332211    345566666666666665443333322        4666666666665 444    


Q ss_pred             hhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCce
Q 013056          264 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL  343 (450)
Q Consensus       264 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L  343 (450)
                          ..+..+..+++|++|++++|.+++..+..+     ..+++|++|++++|.+++..+           ..+..+++|
T Consensus        96 ----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~-----------~~~~~l~~L  155 (285)
T 1ozn_A           96 ----VDPATFHGLGRLHTLHLDRCGLQELGPGLF-----RGLAALQYLYLQDNALQALPD-----------DTFRDLGNL  155 (285)
T ss_dssp             ----CCTTTTTTCTTCCEEECTTSCCCCCCTTTT-----TTCTTCCEEECCSSCCCCCCT-----------TTTTTCTTC
T ss_pred             ----cCHHHhcCCcCCCEEECCCCcCCEECHhHh-----hCCcCCCEEECCCCcccccCH-----------hHhccCCCc
Confidence                123344556666666666666655333222     335666666666666654322           122245666


Q ss_pred             eEEEccCCCCChhhHHHHHH-HhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHH
Q 013056          344 RLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLL  422 (450)
Q Consensus       344 ~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~  422 (450)
                      ++|+|++|+++.     ++. .+..+++|++|++++|.+++.     .|   ..+..+++|++|++++|.++..    .+
T Consensus       156 ~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~-----~~---~~~~~l~~L~~L~l~~n~l~~~----~~  218 (285)
T 1ozn_A          156 THLFLHGNRISS-----VPERAFRGLHSLDRLLLHQNRVAHV-----HP---HAFRDLGRLMTLYLFANNLSAL----PT  218 (285)
T ss_dssp             CEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCCEE-----CT---TTTTTCTTCCEEECCSSCCSCC----CH
T ss_pred             cEEECCCCcccc-----cCHHHhcCccccCEEECCCCccccc-----CH---hHccCcccccEeeCCCCcCCcC----CH
Confidence            666666666664     222 355666666666666666552     12   3455566666666666666653    22


Q ss_pred             HHHhcCCCCCcEEECcCCCCCc
Q 013056          423 DTLSTLRRPPTSLSIADNNLGR  444 (450)
Q Consensus       423 ~~l~~l~~~L~~L~L~~N~l~~  444 (450)
                      ..+..+ .+|++|++++|++..
T Consensus       219 ~~~~~l-~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          219 EALAPL-RALQYLRLNDNPWVC  239 (285)
T ss_dssp             HHHTTC-TTCCEEECCSSCEEC
T ss_pred             HHcccC-cccCEEeccCCCccC
Confidence            334443 336666666666654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.84  E-value=2.8e-22  Score=192.00  Aligned_cols=237  Identities=17%  Similarity=0.098  Sum_probs=169.8

Q ss_pred             hhhcccccCcchh--hhHhh-------hcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHH
Q 013056          164 ARCLRLQNALCVE--ETCQL-------LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGIC  234 (450)
Q Consensus       164 l~~l~L~~~~~~~--~~~~l-------~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  234 (450)
                      ++.++++++.+..  ++..+       .++++|++|++++|.+....+..+  ++..+++|++|++++|.+++. +..+.
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~  141 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL--LEATGPDLNILNLRNVSWATR-DAWLA  141 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS--SSCCSCCCSEEEEESCBCSSS-SSHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH--HHhcCCCccEEEccCCCCcch-hHHHH
Confidence            5566666665532  22333       268999999999999764332210  026789999999999999876 44444


Q ss_pred             HHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEecc
Q 013056          235 RSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLS  314 (450)
Q Consensus       235 ~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls  314 (450)
                      ......   .++|++|++++|.++.        ..+..++.+++|++|+|++|++.+.... +....+..+++|++|+++
T Consensus       142 ~l~~~~---~~~L~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~~~~l~~L~~L~L~  209 (312)
T 1wwl_A          142 ELQQWL---KPGLKVLSIAQAHSLN--------FSCEQVRVFPALSTLDLSDNPELGERGL-ISALCPLKFPTLQVLALR  209 (312)
T ss_dssp             HHHTTC---CTTCCEEEEESCSCCC--------CCTTTCCCCSSCCEEECCSCTTCHHHHH-HHHSCTTSCTTCCEEECT
T ss_pred             HHHHhh---cCCCcEEEeeCCCCcc--------chHHHhccCCCCCEEECCCCCcCcchHH-HHHHHhccCCCCCEEECC
Confidence            321111   3889999999999988        3446678899999999999998764221 111112568999999999


Q ss_pred             CCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHH-HHhhcCCCCCEEecCCCCCChhhHHHHHHHH
Q 013056          315 GNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLG-SALVHIPNLEILDISDNTIEDDGIRSLIPYF  393 (450)
Q Consensus       315 ~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l  393 (450)
                      +|.+++...      ++..+.  ..+++|+.|+|++|.++..    .+ ..+..+++|++|+|++|.|+.      +|  
T Consensus       210 ~N~l~~~~~------~~~~~~--~~l~~L~~L~Ls~N~l~~~----~~~~~~~~l~~L~~L~Ls~N~l~~------ip--  269 (312)
T 1wwl_A          210 NAGMETPSG------VCSALA--AARVQLQGLDLSHNSLRDA----AGAPSCDWPSQLNSLNLSFTGLKQ------VP--  269 (312)
T ss_dssp             TSCCCCHHH------HHHHHH--HTTCCCSEEECTTSCCCSS----CCCSCCCCCTTCCEEECTTSCCSS------CC--
T ss_pred             CCcCcchHH------HHHHHH--hcCCCCCEEECCCCcCCcc----cchhhhhhcCCCCEEECCCCccCh------hh--
Confidence            999985211      222221  2568999999999999873    22 335567899999999999986      55  


Q ss_pred             HhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056          394 VQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF  445 (450)
Q Consensus       394 ~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~  445 (450)
                       ..+.  ++|++|+|++|+|+..     +. +..+. +|++|++++|+|++.
T Consensus       270 -~~~~--~~L~~L~Ls~N~l~~~-----p~-~~~l~-~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          270 -KGLP--AKLSVLDLSYNRLDRN-----PS-PDELP-QVGNLSLKGNPFLDS  311 (312)
T ss_dssp             -SSCC--SEEEEEECCSSCCCSC-----CC-TTTSC-EEEEEECTTCTTTCC
T ss_pred             -hhcc--CCceEEECCCCCCCCC-----hh-HhhCC-CCCEEeccCCCCCCC
Confidence             3444  8999999999999983     33 55643 499999999999875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.84  E-value=4e-22  Score=190.27  Aligned_cols=232  Identities=20%  Similarity=0.203  Sum_probs=176.3

Q ss_pred             cchhhcccccCcchhhhHhh-hcCCCccEEEeecccChHH---HHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHH
Q 013056          162 HYARCLRLQNALCVEETCQL-LRESKLQSLVLRWIRFEEH---VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSL  237 (450)
Q Consensus       162 ~~l~~l~L~~~~~~~~~~~l-~~~~~L~~L~Ls~n~~~~~---~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L  237 (450)
                      ..++.++++++.+..++..+ .++++|++|++++|.+...   ...     +..+++|++|++++|.++...        
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~~~L~~L~Ls~n~i~~l~--------   94 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-----DFGTTSLKYLDLSFNGVITMS--------   94 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-----HHSCSCCCEEECCSCSEEEEE--------
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-----cccccccCEEECCCCccccCh--------
Confidence            35677788888888777765 4889999999999986532   122     346789999999999887421        


Q ss_pred             hccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCC
Q 013056          238 CSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS  317 (450)
Q Consensus       238 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~  317 (450)
                       .....+++|++|++++|.++....       ...+..+++|++|++++|.+++..+..+     ..+++|++|++++|.
T Consensus        95 -~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~  161 (306)
T 2z66_A           95 -SNFLGLEQLEHLDFQHSNLKQMSE-------FSVFLSLRNLIYLDISHTHTRVAFNGIF-----NGLSSLEVLKMAGNS  161 (306)
T ss_dssp             -EEEETCTTCCEEECTTSEEESSTT-------TTTTTTCTTCCEEECTTSCCEECSTTTT-----TTCTTCCEEECTTCE
T ss_pred             -hhcCCCCCCCEEECCCCccccccc-------chhhhhccCCCEEECCCCcCCccchhhc-----ccCcCCCEEECCCCc
Confidence             111126899999999999887321       1356788999999999999877544433     457999999999999


Q ss_pred             CCC-cccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhh
Q 013056          318 IGG-WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA  396 (450)
Q Consensus       318 l~~-~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~  396 (450)
                      +.+ ..+        .   .+..+++|+.|++++|.++.    ..+..+..+++|++|+|++|.+++      ++.  ..
T Consensus       162 l~~~~~~--------~---~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~------~~~--~~  218 (306)
T 2z66_A          162 FQENFLP--------D---IFTELRNLTFLDLSQCQLEQ----LSPTAFNSLSSLQVLNMSHNNFFS------LDT--FP  218 (306)
T ss_dssp             EGGGEEC--------S---CCTTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCSB------CCS--GG
T ss_pred             cccccch--------h---HHhhCcCCCEEECCCCCcCC----cCHHHhcCCCCCCEEECCCCccCc------cCh--hh
Confidence            875 233        2   33467899999999999987    236678899999999999999987      321  34


Q ss_pred             cCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 013056          397 SERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC  446 (450)
Q Consensus       397 l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~  446 (450)
                      +..+++|++|++++|.++..    .+..+..+..+|++|++++|+++...
T Consensus       219 ~~~l~~L~~L~L~~N~l~~~----~~~~~~~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          219 YKCLNSLQVLDYSLNHIMTS----KKQELQHFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             GTTCTTCCEEECTTSCCCBC----SSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred             ccCcccCCEeECCCCCCccc----CHHHHHhhhccCCEEEccCCCeeccc
Confidence            67789999999999999885    44455665456999999999997653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.84  E-value=2e-21  Score=189.29  Aligned_cols=235  Identities=17%  Similarity=0.152  Sum_probs=147.7

Q ss_pred             chhhcccccCcchhhhH-hhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056          163 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  241 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~  241 (450)
                      .++.++++++.+..++. .+.++++|++|++++|.+.......    +.++++|++|++++|.|+......+..      
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~------  122 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS----FSSLGSLEHLDLSYNYLSNLSSSWFKP------  122 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCSSCCHHHHTT------
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhh----cCCCCCCCEEECCCCcCCcCCHhHhCC------
Confidence            56667777777766665 4557788888888888755432222    456778888888888887654443433      


Q ss_pred             cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCC-CCChhHHHHHHHHHhhCCCCCcEEeccCCCCCC
Q 013056          242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  320 (450)
Q Consensus       242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~  320 (450)
                        +++|++|++++|.++....       ...+..+++|++|++++| .++...+..+     ..+++|++|++++|.+++
T Consensus       123 --l~~L~~L~L~~n~l~~l~~-------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~~l~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          123 --LSSLTFLNLLGNPYKTLGE-------TSLFSHLTKLQILRVGNMDTFTKIQRKDF-----AGLTFLEELEIDASDLQS  188 (353)
T ss_dssp             --CTTCSEEECTTCCCSSSCS-------SCSCTTCTTCCEEEEEESSSCCEECTTTT-----TTCCEEEEEEEEETTCCE
T ss_pred             --CccCCEEECCCCCCcccCc-------hhhhccCCCCcEEECCCCccccccCHHHc-----cCCCCCCEEECCCCCcCc
Confidence              5778888888888776221       024567788888888887 4555333322     346788888888888776


Q ss_pred             cccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHH-hhcCCCCCEEecCCCCCChh---------------
Q 013056          321 WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSA-LVHIPNLEILDISDNTIEDD---------------  384 (450)
Q Consensus       321 ~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~N~l~~~---------------  384 (450)
                      ..+        ..+   ..+++|++|++++|.++.     ++.. +..+++|++|++++|.+++.               
T Consensus       189 ~~~--------~~l---~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~  252 (353)
T 2z80_A          189 YEP--------KSL---KSIQNVSHLILHMKQHIL-----LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK  252 (353)
T ss_dssp             ECT--------TTT---TTCSEEEEEEEECSCSTT-----HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCC
T ss_pred             cCH--------HHH---hccccCCeecCCCCcccc-----chhhhhhhcccccEEECCCCccccccccccccccccchhh
Confidence            433        333   356778888888888765     4443 33567777777777776652               


Q ss_pred             ------------hHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHH-HhcCCCCCcEEECcCCCCCcccc
Q 013056          385 ------------GIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDT-LSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       385 ------------g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~-l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                                  ++..+.    ..+..+++|++|++++|+|+.     ++.. +..+ ++|++|++++|++.+..+
T Consensus       253 ~l~L~~~~l~~~~l~~l~----~~l~~l~~L~~L~Ls~N~l~~-----i~~~~~~~l-~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          253 KFTFRNVKITDESLFQVM----KLLNQISGLLELEFSRNQLKS-----VPDGIFDRL-TSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             EEEEESCBCCHHHHHHHH----HHHHTCTTCCEEECCSSCCCC-----CCTTTTTTC-TTCCEEECCSSCBCCCHH
T ss_pred             ccccccccccCcchhhhH----HHHhcccCCCEEECCCCCCCc-----cCHHHHhcC-CCCCEEEeeCCCccCcCC
Confidence                        222222    334555666666666666664     3333 2342 336666666666665543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.83  E-value=9.2e-23  Score=196.68  Aligned_cols=225  Identities=19%  Similarity=0.190  Sum_probs=168.7

Q ss_pred             chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056          163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  242 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~  242 (450)
                      .+..++++++.+..++..+.++++|++|+|++|.+... +.    .+.++++|++|+|++|.++ ..+..+..       
T Consensus        82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l-p~----~~~~l~~L~~L~Ls~n~l~-~lp~~l~~-------  148 (328)
T 4fcg_A           82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMEL-PD----TMQQFAGLETLTLARNPLR-ALPASIAS-------  148 (328)
T ss_dssp             TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCC-CS----CGGGGTTCSEEEEESCCCC-CCCGGGGG-------
T ss_pred             ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccch-hH----HHhccCCCCEEECCCCccc-cCcHHHhc-------
Confidence            45566777777777777788889999999999986632 22    1467889999999999888 33333322       


Q ss_pred             CCCCeeEEEcCCCCCCCCCchhhHHHHHHhh---------cCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEec
Q 013056          243 RIHKIENLSIDISSFIENCPSSVVVELVSFL---------SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDL  313 (450)
Q Consensus       243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l---------~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~L  313 (450)
                       +++|++|++++|.+.+        .++..+         ..+++|++|+|++|.++. .+..+     ..+++|++|++
T Consensus       149 -l~~L~~L~L~~n~~~~--------~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~~l-----~~l~~L~~L~L  213 (328)
T 4fcg_A          149 -LNRLRELSIRACPELT--------ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASI-----ANLQNLKSLKI  213 (328)
T ss_dssp             -CTTCCEEEEEEETTCC--------CCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC-CCGGG-----GGCTTCCEEEE
T ss_pred             -CcCCCEEECCCCCCcc--------ccChhHhhccchhhhccCCCCCEEECcCCCcCc-chHhh-----cCCCCCCEEEc
Confidence             6889999999877665        233333         348899999999998873 55433     44789999999


Q ss_pred             cCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHH
Q 013056          314 SGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYF  393 (450)
Q Consensus       314 s~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l  393 (450)
                      ++|.+++         +|..+.   .+++|+.|+|++|.+..    .+|..+..+++|++|+|++|.+...     +|  
T Consensus       214 ~~N~l~~---------l~~~l~---~l~~L~~L~Ls~n~~~~----~~p~~~~~l~~L~~L~L~~n~~~~~-----~p--  270 (328)
T 4fcg_A          214 RNSPLSA---------LGPAIH---HLPKLEELDLRGCTALR----NYPPIFGGRAPLKRLILKDCSNLLT-----LP--  270 (328)
T ss_dssp             ESSCCCC---------CCGGGG---GCTTCCEEECTTCTTCC----BCCCCTTCCCCCCEEECTTCTTCCB-----CC--
T ss_pred             cCCCCCc---------Cchhhc---cCCCCCEEECcCCcchh----hhHHHhcCCCCCCEEECCCCCchhh-----cc--
Confidence            9999886         334455   56889999999988776    4677788899999999999877654     55  


Q ss_pred             HhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056          394 VQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  444 (450)
Q Consensus       394 ~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~  444 (450)
                       ..+..+++|++|+|++|.+...    +++.+..+.. |+.+++..|.+..
T Consensus       271 -~~~~~l~~L~~L~L~~n~~~~~----iP~~l~~L~~-L~~l~l~~~~~~~  315 (328)
T 4fcg_A          271 -LDIHRLTQLEKLDLRGCVNLSR----LPSLIAQLPA-NCIILVPPHLQAQ  315 (328)
T ss_dssp             -TTGGGCTTCCEEECTTCTTCCC----CCGGGGGSCT-TCEEECCGGGSCC
T ss_pred             -hhhhcCCCCCEEeCCCCCchhh----ccHHHhhccC-ceEEeCCHHHHHH
Confidence             5577789999999999887765    7888888655 9999988776643

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.83  E-value=1.3e-21  Score=188.83  Aligned_cols=229  Identities=17%  Similarity=0.185  Sum_probs=123.3

Q ss_pred             chhhcccccCcchhh-hHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056          163 YARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  241 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~-~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~  241 (450)
                      .++.++++++.+..+ +..+.++++|++|++++|.+......       -.++|++|++++|.++......+..      
T Consensus        77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-------~~~~L~~L~l~~n~l~~~~~~~~~~------  143 (330)
T 1xku_A           77 NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK-------MPKTLQELRVHENEITKVRKSVFNG------  143 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS-------CCTTCCEEECCSSCCCBBCHHHHTT------
T ss_pred             CCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh-------hcccccEEECCCCcccccCHhHhcC------
Confidence            344555555555544 33444556666666666654322111       1145666666666665444433332      


Q ss_pred             cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCc
Q 013056          242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW  321 (450)
Q Consensus       242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~  321 (450)
                        +++|++|++++|.+...+      ..+..+..+++|++|++++|.++. .+..+       .++|++|++++|.+++.
T Consensus       144 --l~~L~~L~l~~n~l~~~~------~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~-------~~~L~~L~l~~n~l~~~  207 (330)
T 1xku_A          144 --LNQMIVVELGTNPLKSSG------IENGAFQGMKKLSYIRIADTNITT-IPQGL-------PPSLTELHLDGNKITKV  207 (330)
T ss_dssp             --CTTCCEEECCSSCCCGGG------BCTTGGGGCTTCCEEECCSSCCCS-CCSSC-------CTTCSEEECTTSCCCEE
T ss_pred             --CccccEEECCCCcCCccC------cChhhccCCCCcCEEECCCCcccc-CCccc-------cccCCEEECCCCcCCcc
Confidence              456666666666654311      122344556666666666666554 22111       25666666666666643


Q ss_pred             ccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCC
Q 013056          322 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN  401 (450)
Q Consensus       322 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~  401 (450)
                      .+        ..+.   .+++|+.|+|++|.++..    .+..+..+++|++|+|++|.++.      +|   ..+..++
T Consensus       208 ~~--------~~~~---~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~------lp---~~l~~l~  263 (330)
T 1xku_A          208 DA--------ASLK---GLNNLAKLGLSFNSISAV----DNGSLANTPHLRELHLNNNKLVK------VP---GGLADHK  263 (330)
T ss_dssp             CT--------GGGT---TCTTCCEEECCSSCCCEE----CTTTGGGSTTCCEEECCSSCCSS------CC---TTTTTCS
T ss_pred             CH--------HHhc---CCCCCCEEECCCCcCcee----ChhhccCCCCCCEEECCCCcCcc------CC---hhhccCC
Confidence            22        3333   456777777777777652    23356667777777777777764      44   4466667


Q ss_pred             CcCEEEccCCCCChhHHHHHHHHHh-cCCCCCcEEECcCCCCCc
Q 013056          402 PLVELYLENCELSGRGVSQLLDTLS-TLRRPPTSLSIADNNLGR  444 (450)
Q Consensus       402 ~L~~L~L~~n~l~~~g~~~l~~~l~-~l~~~L~~L~L~~N~l~~  444 (450)
                      +|++|++++|.|+..+...+..... ....+|+.|++++|++..
T Consensus       264 ~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          264 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             SCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             CcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence            7777777777776642222110000 002346777777777653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.83  E-value=3.1e-22  Score=193.01  Aligned_cols=213  Identities=21%  Similarity=0.225  Sum_probs=169.0

Q ss_pred             cCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCc
Q 013056          183 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP  262 (450)
Q Consensus       183 ~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~  262 (450)
                      ...+++.|+|++|.+......     +.++++|++|+|++|.|+ ..+..+..        +.+|++|++++|.++.   
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~-----l~~l~~L~~L~L~~n~l~-~lp~~~~~--------l~~L~~L~Ls~n~l~~---  141 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQ-----AFRLSHLQHMTIDAAGLM-ELPDTMQQ--------FAGLETLTLARNPLRA---  141 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSC-----GGGGTTCSEEEEESSCCC-CCCSCGGG--------GTTCSEEEEESCCCCC---
T ss_pred             cccceeEEEccCCCchhcChh-----hhhCCCCCEEECCCCCcc-chhHHHhc--------cCCCCEEECCCCcccc---
Confidence            358999999999997643332     346899999999999998 33333332        6899999999999986   


Q ss_pred             hhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHH----HHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCC
Q 013056          263 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFS----SLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGK  338 (450)
Q Consensus       263 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~----~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~  338 (450)
                            ++..+..+++|++|++++|++.+..+..+..    .-+..+++|++|++++|.++.         +|..++   
T Consensus       142 ------lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~---------lp~~l~---  203 (328)
T 4fcg_A          142 ------LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS---------LPASIA---  203 (328)
T ss_dssp             ------CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC---------CCGGGG---
T ss_pred             ------CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc---------chHhhc---
Confidence                  4556888999999999998776655543310    001237899999999999984         335566   


Q ss_pred             CCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHH
Q 013056          339 SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGV  418 (450)
Q Consensus       339 ~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~  418 (450)
                      .+++|++|+|++|.++.     ++..+..+++|++|+|++|.+...     +|   ..+..+++|++|+|++|.+...  
T Consensus       204 ~l~~L~~L~L~~N~l~~-----l~~~l~~l~~L~~L~Ls~n~~~~~-----~p---~~~~~l~~L~~L~L~~n~~~~~--  268 (328)
T 4fcg_A          204 NLQNLKSLKIRNSPLSA-----LGPAIHHLPKLEELDLRGCTALRN-----YP---PIFGGRAPLKRLILKDCSNLLT--  268 (328)
T ss_dssp             GCTTCCEEEEESSCCCC-----CCGGGGGCTTCCEEECTTCTTCCB-----CC---CCTTCCCCCCEEECTTCTTCCB--
T ss_pred             CCCCCCEEEccCCCCCc-----CchhhccCCCCCEEECcCCcchhh-----hH---HHhcCCCCCCEEECCCCCchhh--
Confidence            56899999999999996     777899999999999999988764     55   5688899999999999987765  


Q ss_pred             HHHHHHHhcCCCCCcEEECcCCCCCccccc
Q 013056          419 SQLLDTLSTLRRPPTSLSIADNNLGRFCAN  448 (450)
Q Consensus       419 ~~l~~~l~~l~~~L~~L~L~~N~l~~~~~~  448 (450)
                        ++..+..+. +|++|+|++|++.+.+|.
T Consensus       269 --~p~~~~~l~-~L~~L~L~~n~~~~~iP~  295 (328)
T 4fcg_A          269 --LPLDIHRLT-QLEKLDLRGCVNLSRLPS  295 (328)
T ss_dssp             --CCTTGGGCT-TCCEEECTTCTTCCCCCG
T ss_pred             --cchhhhcCC-CCCEEeCCCCCchhhccH
Confidence              666777754 499999999999998885

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.83  E-value=1.5e-21  Score=198.05  Aligned_cols=229  Identities=19%  Similarity=0.111  Sum_probs=119.5

Q ss_pred             chhhcccccCcchhhhHhh-hcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056          163 YARCLRLQNALCVEETCQL-LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  241 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l-~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~  241 (450)
                      .++.++++++.+..++... .++++|++|+|++|.+....+..    +.++++|+.|++++|.++...+..+..      
T Consensus        81 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~------  150 (477)
T 2id5_A           81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYM----FQDLYNLKSLEVGDNDLVYISHRAFSG------  150 (477)
T ss_dssp             TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEEECCTTCCEECTTSSTT------
T ss_pred             cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhH----ccccccCCEEECCCCccceeChhhccC------
Confidence            3455556665555555443 35566666666666543332211    345566666666666555433322221      


Q ss_pred             cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCc
Q 013056          242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW  321 (450)
Q Consensus       242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~  321 (450)
                        +.+|++|++++|.++.        .....+..+++|+.|+|++|.+.+..+..     +..+++|++|++++|...+.
T Consensus       151 --l~~L~~L~l~~n~l~~--------~~~~~l~~l~~L~~L~l~~n~i~~~~~~~-----~~~l~~L~~L~l~~~~~~~~  215 (477)
T 2id5_A          151 --LNSLEQLTLEKCNLTS--------IPTEALSHLHGLIVLRLRHLNINAIRDYS-----FKRLYRLKVLEISHWPYLDT  215 (477)
T ss_dssp             --CTTCCEEEEESCCCSS--------CCHHHHTTCTTCCEEEEESCCCCEECTTC-----SCSCTTCCEEEEECCTTCCE
T ss_pred             --CCCCCEEECCCCcCcc--------cChhHhcccCCCcEEeCCCCcCcEeChhh-----cccCcccceeeCCCCccccc
Confidence              4566666666666655        23344555666666666666665532222     23355666666666554432


Q ss_pred             ccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHH-HHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCC
Q 013056          322 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLG-SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERC  400 (450)
Q Consensus       322 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~  400 (450)
                      .+        ....   ...+|+.|+|++|+++.     ++ ..+..+++|+.|+|++|.+++.      +.  ..+..+
T Consensus       216 ~~--------~~~~---~~~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~------~~--~~~~~l  271 (477)
T 2id5_A          216 MT--------PNCL---YGLNLTSLSITHCNLTA-----VPYLAVRHLVYLRFLNLSYNPISTI------EG--SMLHEL  271 (477)
T ss_dssp             EC--------TTTT---TTCCCSEEEEESSCCCS-----CCHHHHTTCTTCCEEECCSSCCCEE------CT--TSCTTC
T ss_pred             cC--------cccc---cCccccEEECcCCcccc-----cCHHHhcCccccCeeECCCCcCCcc------Ch--hhcccc
Confidence            22        1111   12356666666666664     22 3456666777777777766652      11  335555


Q ss_pred             CCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056          401 NPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF  445 (450)
Q Consensus       401 ~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~  445 (450)
                      ++|++|+|++|.++..    .+..+..+ .+|++|+|++|.|++.
T Consensus       272 ~~L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~L~~N~l~~~  311 (477)
T 2id5_A          272 LRLQEIQLVGGQLAVV----EPYAFRGL-NYLRVLNVSGNQLTTL  311 (477)
T ss_dssp             TTCCEEECCSSCCSEE----CTTTBTTC-TTCCEEECCSSCCSCC
T ss_pred             ccCCEEECCCCccceE----CHHHhcCc-ccCCEEECCCCcCcee
Confidence            6666666666665553    23334442 2366666666655543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.83  E-value=9.7e-22  Score=194.14  Aligned_cols=236  Identities=17%  Similarity=0.064  Sum_probs=147.1

Q ss_pred             chhhcccccCcchhhhH-hhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056          163 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  241 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~  241 (450)
                      .++.++++++.+..++. .+..+++|++|++++|.+....+..    +.++++|++|++++|.++......+..      
T Consensus        70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~------  139 (390)
T 3o6n_A           70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFHN------  139 (390)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTT------
T ss_pred             cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHH----hcCCCCCCEEECCCCccCcCCHHHhcC------
Confidence            56777888887777665 5557889999999998865543322    567888999999999888433222222      


Q ss_pred             cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCc
Q 013056          242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW  321 (450)
Q Consensus       242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~  321 (450)
                        +++|++|++++|.++.        ..+..+..+++|++|++++|.+++...        ..+++|+.|++++|.+++.
T Consensus       140 --l~~L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~l~~L~~L~l~~n~l~~~  201 (390)
T 3o6n_A          140 --TPKLTTLSMSNNNLER--------IEDDTFQATTSLQNLQLSSNRLTHVDL--------SLIPSLFHANVSYNLLSTL  201 (390)
T ss_dssp             --CTTCCEEECCSSCCCB--------CCTTTTSSCTTCCEEECCSSCCSBCCG--------GGCTTCSEEECCSSCCSEE
T ss_pred             --CCCCcEEECCCCccCc--------cChhhccCCCCCCEEECCCCcCCcccc--------ccccccceeeccccccccc
Confidence              6889999999998877        334456788999999999998877432        2245555555554444321


Q ss_pred             ccccCccc----------HHH-----------------hhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEE
Q 013056          322 LSKYDRSG----------PLF-----------------SLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEIL  374 (450)
Q Consensus       322 ~~~~~~~~----------l~~-----------------~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  374 (450)
                      .....-+.          ++.                 ....+..+++|+.|++++|.++.    ..+..+..+++|++|
T Consensus       202 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L  277 (390)
T 3o6n_A          202 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK----IMYHPFVKMQRLERL  277 (390)
T ss_dssp             ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE----EESGGGTTCSSCCEE
T ss_pred             CCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCC----cChhHccccccCCEE
Confidence            00000000          000                 00111244667777777777765    235556677777777


Q ss_pred             ecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056          375 DISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF  445 (450)
Q Consensus       375 ~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~  445 (450)
                      +|++|++++      +|   ..+..+++|++|+|++|.++.     ++..+..+. +|++|++++|+|++.
T Consensus       278 ~L~~n~l~~------~~---~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~l~-~L~~L~L~~N~i~~~  333 (390)
T 3o6n_A          278 YISNNRLVA------LN---LYGQPIPTLKVLDLSHNHLLH-----VERNQPQFD-RLENLYLDHNSIVTL  333 (390)
T ss_dssp             ECCSSCCCE------EE---CSSSCCTTCCEEECCSSCCCC-----CGGGHHHHT-TCSEEECCSSCCCCC
T ss_pred             ECCCCcCcc------cC---cccCCCCCCCEEECCCCccee-----cCccccccC-cCCEEECCCCcccee
Confidence            777777765      33   334556777777887777765     233333322 277777777777653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.83  E-value=7.2e-20  Score=177.64  Aligned_cols=218  Identities=20%  Similarity=0.228  Sum_probs=127.7

Q ss_pred             chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056          163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  242 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~  242 (450)
                      .++.++++++.+..++. +..+++|+.|++++|.....+..     +..+++|+.|++++|.+.+...  +    ..   
T Consensus       111 ~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-----~~~l~~L~~L~l~~~~~~~~~~--~----~~---  175 (347)
T 4fmz_A          111 NLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-----LSNMTGLNYLTVTESKVKDVTP--I----AN---  175 (347)
T ss_dssp             TCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-----GTTCTTCCEEECCSSCCCCCGG--G----GG---
T ss_pred             cCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-----hhhCCCCcEEEecCCCcCCchh--h----cc---
Confidence            44556666665555444 44566666666666642222221     3456666666666666654332  1    11   


Q ss_pred             CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056          243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  322 (450)
Q Consensus       243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  322 (450)
                       +++|++|++++|.+.+..         . +..+++|++|++++|.+++..+       +..+++|++|++++|.+++. 
T Consensus       176 -l~~L~~L~l~~n~l~~~~---------~-~~~l~~L~~L~l~~n~l~~~~~-------~~~~~~L~~L~l~~n~l~~~-  236 (347)
T 4fmz_A          176 -LTDLYSLSLNYNQIEDIS---------P-LASLTSLHYFTAYVNQITDITP-------VANMTRLNSLKIGNNKITDL-  236 (347)
T ss_dssp             -CTTCSEEECTTSCCCCCG---------G-GGGCTTCCEEECCSSCCCCCGG-------GGGCTTCCEEECCSSCCCCC-
T ss_pred             -CCCCCEEEccCCcccccc---------c-ccCCCccceeecccCCCCCCch-------hhcCCcCCEEEccCCccCCC-
Confidence             566777777777665521         1 4556666666666666655332       23356777777777776641 


Q ss_pred             cccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCC
Q 013056          323 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP  402 (450)
Q Consensus       323 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~  402 (450)
                              +.    +..+++|++|++++|.+++     + ..+..+++|++|++++|.+++      +    ..+..+++
T Consensus       237 --------~~----~~~l~~L~~L~l~~n~l~~-----~-~~~~~l~~L~~L~l~~n~l~~------~----~~~~~l~~  288 (347)
T 4fmz_A          237 --------SP----LANLSQLTWLEIGTNQISD-----I-NAVKDLTKLKMLNVGSNQISD------I----SVLNNLSQ  288 (347)
T ss_dssp             --------GG----GTTCTTCCEEECCSSCCCC-----C-GGGTTCTTCCEEECCSSCCCC------C----GGGGGCTT
T ss_pred             --------cc----hhcCCCCCEEECCCCccCC-----C-hhHhcCCCcCEEEccCCccCC------C----hhhcCCCC
Confidence                    11    2245677777777777765     2 346667777777777777766      2    23455577


Q ss_pred             cCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056          403 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       403 L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                      |++|++++|.++..    .+..+..+ .+|++|++++|++++..|
T Consensus       289 L~~L~L~~n~l~~~----~~~~l~~l-~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          289 LNSLFLNNNQLGNE----DMEVIGGL-TNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             CSEEECCSSCCCGG----GHHHHHTC-TTCSEEECCSSSCCCCGG
T ss_pred             CCEEECcCCcCCCc----ChhHhhcc-ccCCEEEccCCccccccC
Confidence            77777777777765    33445553 337777777777766544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.82  E-value=3.7e-19  Score=185.14  Aligned_cols=137  Identities=15%  Similarity=0.162  Sum_probs=72.6

Q ss_pred             chhhcccccCcchhh-hHhhh-cCCCccEEEeeccc-ChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhc
Q 013056          163 YARCLRLQNALCVEE-TCQLL-RESKLQSLVLRWIR-FEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCS  239 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~-~~~l~-~~~~L~~L~Ls~n~-~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~  239 (450)
                      .++.++++++.+... +..+. .+++|++|++++|. +...   ....+..++++|++|++++|.+++.+...+..    
T Consensus       106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~---~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~----  178 (594)
T 2p1m_B          106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTD---GLAAIAATCRNLKELDLRESDVDDVSGHWLSH----  178 (594)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHH---HHHHHHHHCTTCCEEECTTCEEECCCGGGGGG----
T ss_pred             CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHH---HHHHHHHhCCCCCEEeCcCCccCCcchHHHHH----
Confidence            344555555544432 23333 56778888887773 3221   12223456777888888877766554433322    


Q ss_pred             cccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCC
Q 013056          240 KRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN  316 (450)
Q Consensus       240 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n  316 (450)
                      ....+++|++|++++|. .....    ..+...+..+++|++|++++|.-.+..+..     +..+++|++|+++.+
T Consensus       179 ~~~~~~~L~~L~l~~~~-~~~~~----~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-----~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          179 FPDTYTSLVSLNISCLA-SEVSF----SALERLVTRCPNLKSLKLNRAVPLEKLATL-----LQRAPQLEELGTGGY  245 (594)
T ss_dssp             SCTTCCCCCEEECTTCC-SCCCH----HHHHHHHHHCTTCCEEECCTTSCHHHHHHH-----HHHCTTCSEEECSBC
T ss_pred             HhhcCCcCcEEEecccC-CcCCH----HHHHHHHHhCCCCcEEecCCCCcHHHHHHH-----HhcCCcceEcccccc
Confidence            11125678888887775 21111    134444556788888888877321212211     122456666655444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.82  E-value=1.2e-21  Score=196.70  Aligned_cols=228  Identities=18%  Similarity=0.130  Sum_probs=173.3

Q ss_pred             cchhhcccccCcchhhhH-hhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcc
Q 013056          162 HYARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK  240 (450)
Q Consensus       162 ~~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~  240 (450)
                      ..++.++++++.+..++. .+.++++|++|+|++|.+.......    +.++++|+.|+|++|.|+......+..     
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~-----  134 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA----FNGLANLNTLELFDNRLTTIPNGAFVY-----  134 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGG----GTTCSSCCEEECCSSCCSSCCTTTSCS-----
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhh----ccCCccCCEEECCCCcCCeeCHhHhhc-----
Confidence            356677888888877664 4558899999999999865543222    678899999999999988544333322     


Q ss_pred             ccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCC-CCChhHHHHHHHHHhhCCCCCcEEeccCCCCC
Q 013056          241 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIG  319 (450)
Q Consensus       241 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~  319 (450)
                         +.+|++|++++|.++.        .....+..+++|++|+|++| .++. .+..    .+..+++|++|+|++|.++
T Consensus       135 ---l~~L~~L~L~~N~i~~--------~~~~~~~~l~~L~~L~l~~~~~l~~-i~~~----~~~~l~~L~~L~L~~n~l~  198 (440)
T 3zyj_A          135 ---LSKLKELWLRNNPIES--------IPSYAFNRIPSLRRLDLGELKRLSY-ISEG----AFEGLSNLRYLNLAMCNLR  198 (440)
T ss_dssp             ---CSSCCEEECCSCCCCE--------ECTTTTTTCTTCCEEECCCCTTCCE-ECTT----TTTTCSSCCEEECTTSCCS
T ss_pred             ---cccCceeeCCCCcccc--------cCHHHhhhCcccCEeCCCCCCCcce-eCcc----hhhcccccCeecCCCCcCc
Confidence               6899999999999987        33446778899999999995 4443 2221    1345799999999999988


Q ss_pred             CcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCC
Q 013056          320 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASER  399 (450)
Q Consensus       320 ~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~  399 (450)
                      ..             ..+..+++|+.|+|++|.|+.    ..+..+..+++|+.|+|++|+|++.     .+   ..+..
T Consensus       199 ~~-------------~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~-----~~---~~~~~  253 (440)
T 3zyj_A          199 EI-------------PNLTPLIKLDELDLSGNHLSA----IRPGSFQGLMHLQKLWMIQSQIQVI-----ER---NAFDN  253 (440)
T ss_dssp             SC-------------CCCTTCSSCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTCCCCEE-----CT---TSSTT
T ss_pred             cc-------------cccCCCcccCEEECCCCccCc----cChhhhccCccCCEEECCCCceeEE-----Ch---hhhcC
Confidence            52             234467899999999999987    2467788999999999999999873     22   56788


Q ss_pred             CCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056          400 CNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  444 (450)
Q Consensus       400 ~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~  444 (450)
                      +++|++|+|++|+|+..    ....+..+ .+|+.|+|++|++..
T Consensus       254 l~~L~~L~L~~N~l~~~----~~~~~~~l-~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          254 LQSLVEINLAHNNLTLL----PHDLFTPL-HHLERIHLHHNPWNC  293 (440)
T ss_dssp             CTTCCEEECTTSCCCCC----CTTTTSSC-TTCCEEECCSSCEEC
T ss_pred             CCCCCEEECCCCCCCcc----ChhHhccc-cCCCEEEcCCCCccC
Confidence            89999999999999874    23344554 449999999998754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.82  E-value=1e-21  Score=187.44  Aligned_cols=228  Identities=17%  Similarity=0.129  Sum_probs=172.7

Q ss_pred             hcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhH--HHHHHHHHhccccC
Q 013056          166 CLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSF--VEGICRSLCSKRKR  243 (450)
Q Consensus       166 ~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~--~~~l~~~L~~~~~~  243 (450)
                      .++..+..+..+|..+.  ++|++|++++|.+......    .+.++++|+.|++++|.++..+  +..+..        
T Consensus        11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~--------   76 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSSNGLSFKGCCSQSDFG--------   76 (306)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCEEEEEEHHHHS--------
T ss_pred             EEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHh----HhhccccCCEEECCCCccCcccCccccccc--------
Confidence            44555666665555443  6899999999996644332    2578899999999999998543  233322        


Q ss_pred             CCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccc
Q 013056          244 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS  323 (450)
Q Consensus       244 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~  323 (450)
                      +.+|++|++++|.++.         ++..+..+++|++|++++|.+++.....    .+..+++|++|++++|.+.+..+
T Consensus        77 ~~~L~~L~Ls~n~i~~---------l~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~  143 (306)
T 2z66_A           77 TTSLKYLDLSFNGVIT---------MSSNFLGLEQLEHLDFQHSNLKQMSEFS----VFLSLRNLIYLDISHTHTRVAFN  143 (306)
T ss_dssp             CSCCCEEECCSCSEEE---------EEEEEETCTTCCEEECTTSEEESSTTTT----TTTTCTTCCEEECTTSCCEECST
T ss_pred             ccccCEEECCCCcccc---------ChhhcCCCCCCCEEECCCCcccccccch----hhhhccCCCEEECCCCcCCccch
Confidence            6899999999999876         3445778999999999999887643311    12457999999999999886444


Q ss_pred             ccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCc
Q 013056          324 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL  403 (450)
Q Consensus       324 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L  403 (450)
                              ..   +..+++|++|++++|.+++.   .+|..+..+++|++|++++|.+++.     .|   ..+..+++|
T Consensus       144 --------~~---~~~l~~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~Ls~n~l~~~-----~~---~~~~~l~~L  201 (306)
T 2z66_A          144 --------GI---FNGLSSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQL-----SP---TAFNSLSSL  201 (306)
T ss_dssp             --------TT---TTTCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEE-----CT---TTTTTCTTC
T ss_pred             --------hh---cccCcCCCEEECCCCccccc---cchhHHhhCcCCCEEECCCCCcCCc-----CH---HHhcCCCCC
Confidence                    33   34678999999999998752   1566788999999999999999873     23   567888999


Q ss_pred             CEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056          404 VELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       404 ~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                      ++|++++|.++...    +..+..+ .+|++|++++|.|++..+
T Consensus       202 ~~L~L~~N~l~~~~----~~~~~~l-~~L~~L~L~~N~l~~~~~  240 (306)
T 2z66_A          202 QVLNMSHNNFFSLD----TFPYKCL-NSLQVLDYSLNHIMTSKK  240 (306)
T ss_dssp             CEEECTTSCCSBCC----SGGGTTC-TTCCEEECTTSCCCBCSS
T ss_pred             CEEECCCCccCccC----hhhccCc-ccCCEeECCCCCCcccCH
Confidence            99999999998742    2235553 459999999999988765

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.82  E-value=7.5e-23  Score=196.03  Aligned_cols=226  Identities=19%  Similarity=0.208  Sum_probs=174.6

Q ss_pred             chhhccccc-Ccch-hhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcc
Q 013056          163 YARCLRLQN-ALCV-EETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK  240 (450)
Q Consensus       163 ~l~~l~L~~-~~~~-~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~  240 (450)
                      .++.+++++ +.+. .++..+.++++|++|++++|.+....+..    +.++++|++|++++|.|++..+..+..     
T Consensus        77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----  147 (313)
T 1ogq_A           77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF----LSQIKTLVTLDFSYNALSGTLPPSISS-----  147 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG----GGGCTTCCEEECCSSEEESCCCGGGGG-----
T ss_pred             CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH----HhCCCCCCEEeCCCCccCCcCChHHhc-----
Confidence            455666663 4443 46667789999999999999976443332    578899999999999988655544433     


Q ss_pred             ccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCC-CCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCC
Q 013056          241 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGR-SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG  319 (450)
Q Consensus       241 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~  319 (450)
                         +++|++|++++|.+++        .++..+..++ +|++|++++|.+++..+..+     ..+. |++|++++|.++
T Consensus       148 ---l~~L~~L~L~~N~l~~--------~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~-----~~l~-L~~L~Ls~N~l~  210 (313)
T 1ogq_A          148 ---LPNLVGITFDGNRISG--------AIPDSYGSFSKLFTSMTISRNRLTGKIPPTF-----ANLN-LAFVDLSRNMLE  210 (313)
T ss_dssp             ---CTTCCEEECCSSCCEE--------ECCGGGGCCCTTCCEEECCSSEEEEECCGGG-----GGCC-CSEEECCSSEEE
T ss_pred             ---CCCCCeEECcCCcccC--------cCCHHHhhhhhcCcEEECcCCeeeccCChHH-----hCCc-ccEEECcCCccc
Confidence               6999999999999986        4566777887 99999999999987666655     3344 999999999998


Q ss_pred             CcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCC
Q 013056          320 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASER  399 (450)
Q Consensus       320 ~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~  399 (450)
                      +..+        ..+.   .+++|+.|+|++|.++.     .+..+..+++|++|+|++|.|++.     +|   ..+..
T Consensus       211 ~~~~--------~~~~---~l~~L~~L~L~~N~l~~-----~~~~~~~l~~L~~L~Ls~N~l~~~-----~p---~~l~~  266 (313)
T 1ogq_A          211 GDAS--------VLFG---SDKNTQKIHLAKNSLAF-----DLGKVGLSKNLNGLDLRNNRIYGT-----LP---QGLTQ  266 (313)
T ss_dssp             ECCG--------GGCC---TTSCCSEEECCSSEECC-----BGGGCCCCTTCCEEECCSSCCEEC-----CC---GGGGG
T ss_pred             CcCC--------HHHh---cCCCCCEEECCCCceee-----ecCcccccCCCCEEECcCCcccCc-----CC---hHHhc
Confidence            7544        4444   67999999999999986     233478899999999999999854     55   56788


Q ss_pred             CCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCC-CCc
Q 013056          400 CNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN-LGR  444 (450)
Q Consensus       400 ~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~-l~~  444 (450)
                      +++|++|+|++|+++..    ++.. ..+ ++|+.+++++|+ +.+
T Consensus       267 l~~L~~L~Ls~N~l~~~----ip~~-~~l-~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          267 LKFLHSLNVSFNNLCGE----IPQG-GNL-QRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CTTCCEEECCSSEEEEE----CCCS-TTG-GGSCGGGTCSSSEEES
T ss_pred             CcCCCEEECcCCccccc----CCCC-ccc-cccChHHhcCCCCccC
Confidence            89999999999998864    3332 332 239999999998 444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.82  E-value=9.5e-20  Score=175.92  Aligned_cols=210  Identities=21%  Similarity=0.261  Sum_probs=164.2

Q ss_pred             CCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchh
Q 013056          185 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS  264 (450)
Q Consensus       185 ~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~  264 (450)
                      ++++.|++++|.+......     ...+++|++|++++|.+++.....+...       +++|++|++++|.+++     
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~L~~~~l~~~~~~~~~~~-------~~~L~~L~L~~~~l~~-----  132 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-----HFSPFRVQHMDLSNSVIEVSTLHGILSQ-------CSKLQNLSLEGLRLSD-----  132 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-----CCCCBCCCEEECTTCEECHHHHHHHHTT-------BCCCSEEECTTCBCCH-----
T ss_pred             ccceEEEcCCccccccchh-----hccCCCCCEEEccCCCcCHHHHHHHHhh-------CCCCCEEeCcCcccCH-----
Confidence            7899999999985554333     3467999999999999987755444332       7999999999999887     


Q ss_pred             hHHHHHHhhcCCCCCCEEecCCC-CCChhHHHHHHHHHhhCCCCCcEEeccCC-CCCCcccccCcccHHHhhhCCCCCC-
Q 013056          265 VVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGN-SIGGWLSKYDRSGPLFSLGAGKSLQ-  341 (450)
Q Consensus       265 ~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~l~~~l~~~~~l~-  341 (450)
                         ..+..++.+++|++|++++| .+++.+...+..    .+++|++|++++| .+++.       .++..+.   .++ 
T Consensus       133 ---~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~----~~~~L~~L~l~~~~~l~~~-------~~~~~~~---~l~~  195 (336)
T 2ast_B          133 ---PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS----SCSRLDELNLSWCFDFTEK-------HVQVAVA---HVSE  195 (336)
T ss_dssp             ---HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH----HCTTCCEEECCCCTTCCHH-------HHHHHHH---HSCT
T ss_pred             ---HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh----cCCCCCEEcCCCCCCcChH-------HHHHHHH---hccc
Confidence               77888889999999999999 798765554433    3799999999999 88752       1234455   457 


Q ss_pred             ceeEEEccCC--CCChhhHHHHHHHhhcCCCCCEEecCCCC-CChhhHHHHHHHHHhhcCCCCCcCEEEccCC-CCChhH
Q 013056          342 SLRLLNLRGN--NLCKADARDLGSALVHIPNLEILDISDNT-IEDDGIRSLIPYFVQASERCNPLVELYLENC-ELSGRG  417 (450)
Q Consensus       342 ~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n-~l~~~g  417 (450)
                      +|++|++++|  .+++.   .++..+..+++|++|++++|. +++.++        ..+..+++|++|++++| .+++.+
T Consensus       196 ~L~~L~l~~~~~~~~~~---~l~~~~~~~~~L~~L~l~~~~~l~~~~~--------~~l~~l~~L~~L~l~~~~~~~~~~  264 (336)
T 2ast_B          196 TITQLNLSGYRKNLQKS---DLSTLVRRCPNLVHLDLSDSVMLKNDCF--------QEFFQLNYLQHLSLSRCYDIIPET  264 (336)
T ss_dssp             TCCEEECCSCGGGSCHH---HHHHHHHHCTTCSEEECTTCTTCCGGGG--------GGGGGCTTCCEEECTTCTTCCGGG
T ss_pred             CCCEEEeCCCcccCCHH---HHHHHHhhCCCCCEEeCCCCCcCCHHHH--------HHHhCCCCCCEeeCCCCCCCCHHH
Confidence            9999999999  67754   467778889999999999999 787643        33556699999999999 577765


Q ss_pred             HHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056          418 VSQLLDTLSTLRRPPTSLSIADNNLGRF  445 (450)
Q Consensus       418 ~~~l~~~l~~l~~~L~~L~L~~N~l~~~  445 (450)
                      +    ..+..+ ++|++|++++| ++++
T Consensus       265 ~----~~l~~~-~~L~~L~l~~~-i~~~  286 (336)
T 2ast_B          265 L----LELGEI-PTLKTLQVFGI-VPDG  286 (336)
T ss_dssp             G----GGGGGC-TTCCEEECTTS-SCTT
T ss_pred             H----HHHhcC-CCCCEEeccCc-cCHH
Confidence            4    334553 44999999999 7664

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.82  E-value=9.2e-19  Score=182.09  Aligned_cols=249  Identities=17%  Similarity=0.160  Sum_probs=140.2

Q ss_pred             chhhcccccCcchhh-hHhhhc-CC-CccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhc
Q 013056          163 YARCLRLQNALCVEE-TCQLLR-ES-KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCS  239 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~-~~~l~~-~~-~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~  239 (450)
                      .++.++++++.+... +..+.. ++ +|++|++++|....  ......+..++++|++|+|++|.+++.+...+...+..
T Consensus       113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~  190 (592)
T 3ogk_B          113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT--TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH  190 (592)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEE--HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred             CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcC--HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence            445566666654432 233333 33 48888888876211  11123335677888888888887766543333222222


Q ss_pred             cccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCC
Q 013056          240 KRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG  319 (450)
Q Consensus       240 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~  319 (450)
                          +++|++|++++|.++.....    .+...+.++++|++|++++|.+.+ .+..+     ..+++|++|+++.+...
T Consensus       191 ----~~~L~~L~L~~n~~~~~~~~----~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~-----~~~~~L~~L~l~~~~~~  256 (592)
T 3ogk_B          191 ----NTSLEVLNFYMTEFAKISPK----DLETIARNCRSLVSVKVGDFEILE-LVGFF-----KAAANLEEFCGGSLNED  256 (592)
T ss_dssp             ----CCCCCEEECTTCCCSSCCHH----HHHHHHHHCTTCCEEECSSCBGGG-GHHHH-----HHCTTCCEEEECBCCCC
T ss_pred             ----CCCccEEEeeccCCCccCHH----HHHHHHhhCCCCcEEeccCccHHH-HHHHH-----hhhhHHHhhcccccccc
Confidence                68888888888888743322    566667778888888888887766 34333     23688888888753211


Q ss_pred             Cc---c---------------cccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCC
Q 013056          320 GW---L---------------SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTI  381 (450)
Q Consensus       320 ~~---~---------------~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l  381 (450)
                      ..   .               .......++..+.   .+++|++|+|++|.+++.+.   +..+..+++|++|+++ +.+
T Consensus       257 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~---~~~~L~~L~Ls~~~l~~~~~---~~~~~~~~~L~~L~L~-~~~  329 (592)
T 3ogk_B          257 IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFP---FAAQIRKLDLLYALLETEDH---CTLIQKCPNLEVLETR-NVI  329 (592)
T ss_dssp             TTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGG---GGGGCCEEEETTCCCCHHHH---HHHHTTCTTCCEEEEE-GGG
T ss_pred             cchHHHHHHhhccccccccCccccchhHHHHHHh---hcCCCcEEecCCCcCCHHHH---HHHHHhCcCCCEEecc-Ccc
Confidence            00   0               0001122333333   45788999999998877653   3335566666666666 555


Q ss_pred             ChhhHHHHHHHHHhhcCCCCCcCEEEcc-----------CCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056          382 EDDGIRSLIPYFVQASERCNPLVELYLE-----------NCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF  445 (450)
Q Consensus       382 ~~~g~~~l~~~l~~~l~~~~~L~~L~L~-----------~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~  445 (450)
                      ++.|+..++       ..+++|++|+++           .|.+++.|...+...+.+    |++|+++.|.+++.
T Consensus       330 ~~~~l~~~~-------~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~----L~~L~l~~~~l~~~  393 (592)
T 3ogk_B          330 GDRGLEVLA-------QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQE----LEYMAVYVSDITNE  393 (592)
T ss_dssp             HHHHHHHHH-------HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTT----CSEEEEEESCCCHH
T ss_pred             CHHHHHHHH-------HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCcc----CeEEEeecCCccHH
Confidence            555544443       123455555555           244555554444333322    55555555555443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.82  E-value=2.3e-21  Score=195.31  Aligned_cols=229  Identities=18%  Similarity=0.117  Sum_probs=175.6

Q ss_pred             cchhhcccccCcchhhhH-hhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcc
Q 013056          162 HYARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK  240 (450)
Q Consensus       162 ~~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~  240 (450)
                      ..++.++++++.+..++. .+.++++|++|+|++|.+.......    +.++++|+.|+|++|.|+......+..     
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~-----  145 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA----FNGLASLNTLELFDNWLTVIPSGAFEY-----  145 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCSBCCTTTSSS-----
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhh----ccCcccCCEEECCCCcCCccChhhhcc-----
Confidence            467788899888887654 4568899999999999866543322    578899999999999988544333322     


Q ss_pred             ccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCC-CCChhHHHHHHHHHhhCCCCCcEEeccCCCCC
Q 013056          241 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIG  319 (450)
Q Consensus       241 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~  319 (450)
                         +++|++|++++|.++.        .....+..+++|++|++++| .++. .+..    .+..+++|++|+|++|.++
T Consensus       146 ---l~~L~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~l~~~~~l~~-i~~~----~~~~l~~L~~L~L~~n~l~  209 (452)
T 3zyi_A          146 ---LSKLRELWLRNNPIES--------IPSYAFNRVPSLMRLDLGELKKLEY-ISEG----AFEGLFNLKYLNLGMCNIK  209 (452)
T ss_dssp             ---CTTCCEEECCSCCCCE--------ECTTTTTTCTTCCEEECCCCTTCCE-ECTT----TTTTCTTCCEEECTTSCCS
T ss_pred             ---cCCCCEEECCCCCcce--------eCHhHHhcCCcccEEeCCCCCCccc-cChh----hccCCCCCCEEECCCCccc
Confidence               6899999999999987        33446778999999999995 4444 3221    1345799999999999988


Q ss_pred             CcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCC
Q 013056          320 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASER  399 (450)
Q Consensus       320 ~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~  399 (450)
                      +.             ..+..+++|+.|+|++|.|+.    ..+..+..+++|+.|+|++|+++..     .+   ..+..
T Consensus       210 ~~-------------~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~-----~~---~~~~~  264 (452)
T 3zyi_A          210 DM-------------PNLTPLVGLEELEMSGNHFPE----IRPGSFHGLSSLKKLWVMNSQVSLI-----ER---NAFDG  264 (452)
T ss_dssp             SC-------------CCCTTCTTCCEEECTTSCCSE----ECGGGGTTCTTCCEEECTTSCCCEE-----CT---TTTTT
T ss_pred             cc-------------ccccccccccEEECcCCcCcc----cCcccccCccCCCEEEeCCCcCceE-----CH---HHhcC
Confidence            62             234467899999999999997    3467789999999999999999873     23   56788


Q ss_pred             CCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056          400 CNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF  445 (450)
Q Consensus       400 ~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~  445 (450)
                      +++|++|+|++|.|+..    ....+..+ .+|++|+|++|++...
T Consensus       265 l~~L~~L~L~~N~l~~~----~~~~~~~l-~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          265 LASLVELNLAHNNLSSL----PHDLFTPL-RYLVELHLHHNPWNCD  305 (452)
T ss_dssp             CTTCCEEECCSSCCSCC----CTTSSTTC-TTCCEEECCSSCEECS
T ss_pred             CCCCCEEECCCCcCCcc----ChHHhccc-cCCCEEEccCCCcCCC
Confidence            89999999999999874    22334553 4499999999987543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.82  E-value=2.5e-21  Score=201.88  Aligned_cols=233  Identities=18%  Similarity=0.086  Sum_probs=152.8

Q ss_pred             chhhcccccCcchhhhH-hhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056          163 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  241 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~  241 (450)
                      .++.+++.++.+..++. .+..+++|++|+|++|.+....+..    +.++++|+.|+|++|.|+......+..      
T Consensus        76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~------  145 (597)
T 3oja_B           76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFHN------  145 (597)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTT------
T ss_pred             CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH----HcCCCCCCEEEeeCCCCCCCCHHHhcc------
Confidence            56778888888777665 5568889999999999865543332    567889999999999888443322222      


Q ss_pred             cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCc
Q 013056          242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW  321 (450)
Q Consensus       242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~  321 (450)
                        +++|++|++++|.++.        ..+..++.+++|++|+|++|.+++..+        ..+++|+.|++++|.+++.
T Consensus       146 --l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~--------~~l~~L~~L~l~~n~l~~l  207 (597)
T 3oja_B          146 --TPKLTTLSMSNNNLER--------IEDDTFQATTSLQNLQLSSNRLTHVDL--------SLIPSLFHANVSYNLLSTL  207 (597)
T ss_dssp             --CTTCCEEECCSSCCCB--------CCTTTTTTCTTCCEEECTTSCCSBCCG--------GGCTTCSEEECCSSCCSEE
T ss_pred             --CCCCCEEEeeCCcCCC--------CChhhhhcCCcCcEEECcCCCCCCcCh--------hhhhhhhhhhcccCccccc
Confidence              6889999999998887        344567788999999999998877432        2245555554444443321


Q ss_pred             ccccC----------------------------cccH--HHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCC
Q 013056          322 LSKYD----------------------------RSGP--LFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNL  371 (450)
Q Consensus       322 ~~~~~----------------------------~~~l--~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  371 (450)
                      .....                            ...+  +..+.   .+++|+.|+|++|.++.    ..|..+..+++|
T Consensus       208 ~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~---~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L  280 (597)
T 3oja_B          208 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLL---NYPGLVEVDLSYNELEK----IMYHPFVKMQRL  280 (597)
T ss_dssp             ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGG---GCTTCSEEECCSSCCCE----EESGGGTTCSSC
T ss_pred             cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhc---cCCCCCEEECCCCccCC----CCHHHhcCccCC
Confidence            00000                            0000  01222   45677777888777776    245667777888


Q ss_pred             CEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056          372 EILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF  445 (450)
Q Consensus       372 ~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~  445 (450)
                      +.|+|++|.++.      +|   ..+..+++|++|+|++|.++.     ++..+..+. +|++|+|++|.|++.
T Consensus       281 ~~L~Ls~N~l~~------l~---~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~~l~-~L~~L~L~~N~l~~~  339 (597)
T 3oja_B          281 ERLYISNNRLVA------LN---LYGQPIPTLKVLDLSHNHLLH-----VERNQPQFD-RLENLYLDHNSIVTL  339 (597)
T ss_dssp             CEEECTTSCCCE------EE---CSSSCCTTCCEEECCSSCCCC-----CGGGHHHHT-TCSEEECCSSCCCCC
T ss_pred             CEEECCCCCCCC------CC---cccccCCCCcEEECCCCCCCc-----cCcccccCC-CCCEEECCCCCCCCc
Confidence            888888888776      33   344566788888888888775     333344432 377888887777654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.81  E-value=1.3e-21  Score=193.25  Aligned_cols=230  Identities=21%  Similarity=0.213  Sum_probs=168.4

Q ss_pred             chhhcccccCcchhhhHh-hhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056          163 YARCLRLQNALCVEETCQ-LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  241 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~-l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~  241 (450)
                      .++.++++++.+..++.. +.++++|++|++++|.+......    .+.++++|++|++++|.++...+..+..      
T Consensus        94 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~------  163 (390)
T 3o6n_A           94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNNNLERIEDDTFQA------  163 (390)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCBCCTTTTSS------
T ss_pred             CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHH----HhcCCCCCcEEECCCCccCccChhhccC------
Confidence            567889999998887655 45889999999999997644332    2568899999999999998654443322      


Q ss_pred             cCCCCeeEEEcCCCCCCCCCchhhHHHHHH---------hh---------------------cCCCCCCEEecCCCCCCh
Q 013056          242 KRIHKIENLSIDISSFIENCPSSVVVELVS---------FL---------------------SSGRSLCSLKLRHCHLDR  291 (450)
Q Consensus       242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~---------~l---------------------~~~~~L~~L~Ls~n~l~~  291 (450)
                        +++|++|++++|.++..+...++. +..         .+                     ...++|++|++++|.+++
T Consensus       164 --l~~L~~L~l~~n~l~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~  240 (390)
T 3o6n_A          164 --TTSLQNLQLSSNRLTHVDLSLIPS-LFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD  240 (390)
T ss_dssp             --CTTCCEEECCSSCCSBCCGGGCTT-CSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC
T ss_pred             --CCCCCEEECCCCcCCccccccccc-cceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc
Confidence              689999999999998854321110 000         00                     011356666667776665


Q ss_pred             hHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCC
Q 013056          292 DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNL  371 (450)
Q Consensus       292 ~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  371 (450)
                      .  ..     +..+++|++|++++|.+++..+        ..+.   .+++|+.|+|++|+++.     ++..+..+++|
T Consensus       241 ~--~~-----l~~l~~L~~L~Ls~n~l~~~~~--------~~~~---~l~~L~~L~L~~n~l~~-----~~~~~~~l~~L  297 (390)
T 3o6n_A          241 T--AW-----LLNYPGLVEVDLSYNELEKIMY--------HPFV---KMQRLERLYISNNRLVA-----LNLYGQPIPTL  297 (390)
T ss_dssp             C--GG-----GGGCTTCSEEECCSSCCCEEES--------GGGT---TCSSCCEEECCSSCCCE-----EECSSSCCTTC
T ss_pred             c--HH-----HcCCCCccEEECCCCcCCCcCh--------hHcc---ccccCCEEECCCCcCcc-----cCcccCCCCCC
Confidence            3  11     2457899999999999887544        4444   67899999999999987     56666788999


Q ss_pred             CEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056          372 EILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF  445 (450)
Q Consensus       372 ~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~  445 (450)
                      ++|+|++|+++.      +|   ..+..+++|++|++++|.|+...       +..+ .+|++|++++|+++..
T Consensus       298 ~~L~L~~n~l~~------~~---~~~~~l~~L~~L~L~~N~i~~~~-------~~~~-~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          298 KVLDLSHNHLLH------VE---RNQPQFDRLENLYLDHNSIVTLK-------LSTH-HTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CEEECCSSCCCC------CG---GGHHHHTTCSEEECCSSCCCCCC-------CCTT-CCCSEEECCSSCEEHH
T ss_pred             CEEECCCCccee------cC---ccccccCcCCEEECCCCccceeC-------chhh-ccCCEEEcCCCCccch
Confidence            999999999986      33   33445589999999999998842       4443 4499999999998764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.81  E-value=2.4e-21  Score=202.37  Aligned_cols=94  Identities=24%  Similarity=0.295  Sum_probs=56.3

Q ss_pred             CCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHH
Q 013056          339 SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGV  418 (450)
Q Consensus       339 ~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~  418 (450)
                      .+++|++|++++|.+++..+. .+..+..+++|++|++++|++++.     .|   ..+..+++|++|+|++|+++..  
T Consensus       447 ~l~~L~~L~L~~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~-----~~---~~~~~l~~L~~L~Ls~N~l~~~--  515 (606)
T 3t6q_A          447 GLPALQHLNLQGNHFPKGNIQ-KTNSLQTLGRLEILVLSFCDLSSI-----DQ---HAFTSLKMMNHVDLSHNRLTSS--  515 (606)
T ss_dssp             TCTTCCEEECTTCBCGGGEEC-SSCGGGGCTTCCEEECTTSCCCEE-----CT---TTTTTCTTCCEEECCSSCCCGG--
T ss_pred             CCCCCCEEECCCCCCCccccc-cchhhccCCCccEEECCCCccCcc-----Ch---hhhccccCCCEEECCCCccCcC--
Confidence            456666666666666542100 113355666777777777766652     22   4566667777777777777765  


Q ss_pred             HHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056          419 SQLLDTLSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       419 ~~l~~~l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                        .++.+..+. .| +|++++|++++..|
T Consensus       516 --~~~~l~~l~-~L-~L~L~~N~l~~~~~  540 (606)
T 3t6q_A          516 --SIEALSHLK-GI-YLNLASNHISIILP  540 (606)
T ss_dssp             --GGGGGTTCC-SC-EEECCSSCCCCCCG
T ss_pred             --ChhHhCccc-cc-EEECcCCcccccCH
Confidence              345555533 36 77777777776544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.81  E-value=3.4e-21  Score=181.89  Aligned_cols=231  Identities=16%  Similarity=0.070  Sum_probs=173.9

Q ss_pred             cchhhcccccCcchhhhHh-hhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCC-CChhHHHHHHHHHhc
Q 013056          162 HYARCLRLQNALCVEETCQ-LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCS  239 (450)
Q Consensus       162 ~~l~~l~L~~~~~~~~~~~-l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~  239 (450)
                      ..++.++++++.+..++.. +..+++|++|++++|.+.......    +.++++|++|++++|. ++...+..+..    
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~~l~~~~~~~~~~----  103 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA----FTGLALLEQLDLSDNAQLRSVDPATFHG----  103 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSCTTCCCCCTTTTTT----
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhh----cCCccCCCEEeCCCCCCccccCHHHhcC----
Confidence            3567778888888877654 558899999999999865542222    5688999999999997 77554444333    


Q ss_pred             cccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCC
Q 013056          240 KRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG  319 (450)
Q Consensus       240 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~  319 (450)
                          +++|++|++++|.++.        ..+..+..+++|++|++++|.++...+..+     ..+++|++|++++|.++
T Consensus       104 ----l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~  166 (285)
T 1ozn_A          104 ----LGRLHTLHLDRCGLQE--------LGPGLFRGLAALQYLYLQDNALQALPDDTF-----RDLGNLTHLFLHGNRIS  166 (285)
T ss_dssp             ----CTTCCEEECTTSCCCC--------CCTTTTTTCTTCCEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSSCCC
T ss_pred             ----CcCCCEEECCCCcCCE--------ECHhHhhCCcCCCEEECCCCcccccCHhHh-----ccCCCccEEECCCCccc
Confidence                6899999999999988        344567789999999999999987443323     45799999999999998


Q ss_pred             CcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCC
Q 013056          320 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASER  399 (450)
Q Consensus       320 ~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~  399 (450)
                      +..+           ..+..+++|+.|++++|.++..    .+..+..+++|++|++++|.+++.     .+   ..+..
T Consensus       167 ~~~~-----------~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~-----~~---~~~~~  223 (285)
T 1ozn_A          167 SVPE-----------RAFRGLHSLDRLLLHQNRVAHV----HPHAFRDLGRLMTLYLFANNLSAL-----PT---EALAP  223 (285)
T ss_dssp             EECT-----------TTTTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCSCC-----CH---HHHTT
T ss_pred             ccCH-----------HHhcCccccCEEECCCCccccc----CHhHccCcccccEeeCCCCcCCcC-----CH---HHccc
Confidence            6333           2334679999999999999973    477788999999999999999873     22   45778


Q ss_pred             CCCcCEEEccCCCCChh-HHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056          400 CNPLVELYLENCELSGR-GVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       400 ~~~L~~L~L~~n~l~~~-g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                      +++|++|++++|.++.. ....+...+..       +..+.|.+....|
T Consensus       224 l~~L~~L~l~~N~~~c~~~~~~~~~~l~~-------~~~~~~~~~c~~p  265 (285)
T 1ozn_A          224 LRALQYLRLNDNPWVCDCRARPLWAWLQK-------FRGSSSEVPCSLP  265 (285)
T ss_dssp             CTTCCEEECCSSCEECSGGGHHHHHHHHH-------CCSEECCCBEEES
T ss_pred             CcccCEEeccCCCccCCCCcHHHHHHHHh-------cccccCccccCCc
Confidence            89999999999998642 22233444443       3345666665554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.80  E-value=1.2e-19  Score=175.99  Aligned_cols=230  Identities=17%  Similarity=0.230  Sum_probs=177.0

Q ss_pred             hccccccceecccc------c--chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEE
Q 013056          148 CDYSKLSYHCQQFG------H--YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLE  219 (450)
Q Consensus       148 ~~l~~L~l~~~~~~------~--~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~  219 (450)
                      .+++.+.++...+.      .  .++.+++.+|.....+..+..+++|++|++++|.+.....      +..+++|+.|+
T Consensus       110 ~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------~~~l~~L~~L~  183 (347)
T 4fmz_A          110 TNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP------IANLTDLYSLS  183 (347)
T ss_dssp             TTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG------GGGCTTCSEEE
T ss_pred             CcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh------hccCCCCCEEE
Confidence            66677766554221      1  5577888888655556667889999999999999655433      56889999999


Q ss_pred             ccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHH
Q 013056          220 FLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFS  299 (450)
Q Consensus       220 Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~  299 (450)
                      +++|.+++...  +    ..    +.+|+.|++++|.+++..        +  +..+++|++|++++|.+++..+     
T Consensus       184 l~~n~l~~~~~--~----~~----l~~L~~L~l~~n~l~~~~--------~--~~~~~~L~~L~l~~n~l~~~~~-----  238 (347)
T 4fmz_A          184 LNYNQIEDISP--L----AS----LTSLHYFTAYVNQITDIT--------P--VANMTRLNSLKIGNNKITDLSP-----  238 (347)
T ss_dssp             CTTSCCCCCGG--G----GG----CTTCCEEECCSSCCCCCG--------G--GGGCTTCCEEECCSSCCCCCGG-----
T ss_pred             ccCCccccccc--c----cC----CCccceeecccCCCCCCc--------h--hhcCCcCCEEEccCCccCCCcc-----
Confidence            99999886443  2    22    689999999999998721        1  6788999999999999987443     


Q ss_pred             HHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCC
Q 013056          300 SLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN  379 (450)
Q Consensus       300 ~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N  379 (450)
                        +..+++|++|++++|.+++.          ..+   ..+++|+.|++++|.+++     + +.+..+++|++|++++|
T Consensus       239 --~~~l~~L~~L~l~~n~l~~~----------~~~---~~l~~L~~L~l~~n~l~~-----~-~~~~~l~~L~~L~L~~n  297 (347)
T 4fmz_A          239 --LANLSQLTWLEIGTNQISDI----------NAV---KDLTKLKMLNVGSNQISD-----I-SVLNNLSQLNSLFLNNN  297 (347)
T ss_dssp             --GTTCTTCCEEECCSSCCCCC----------GGG---TTCTTCCEEECCSSCCCC-----C-GGGGGCTTCSEEECCSS
T ss_pred             --hhcCCCCCEEECCCCccCCC----------hhH---hcCCCcCEEEccCCccCC-----C-hhhcCCCCCCEEECcCC
Confidence              35589999999999998862          223   367899999999999997     3 45889999999999999


Q ss_pred             CCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056          380 TIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  444 (450)
Q Consensus       380 ~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~  444 (450)
                      .+++.+     +   ..+..+++|++|++++|.++..     .. +..+. +|++|++++|+|+.
T Consensus       298 ~l~~~~-----~---~~l~~l~~L~~L~L~~n~l~~~-----~~-~~~l~-~L~~L~l~~N~i~~  347 (347)
T 4fmz_A          298 QLGNED-----M---EVIGGLTNLTTLFLSQNHITDI-----RP-LASLS-KMDSADFANQVIKK  347 (347)
T ss_dssp             CCCGGG-----H---HHHHTCTTCSEEECCSSSCCCC-----GG-GGGCT-TCSEESSSCC----
T ss_pred             cCCCcC-----h---hHhhccccCCEEEccCCccccc-----cC-hhhhh-ccceeehhhhcccC
Confidence            998853     2   3456679999999999999984     22 56644 49999999999863

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.80  E-value=1.4e-20  Score=196.47  Aligned_cols=135  Identities=15%  Similarity=0.083  Sum_probs=101.1

Q ss_pred             chhhcccccCcchhhh-HhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056          163 YARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  241 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~-~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~  241 (450)
                      .++.+++++|.+..+. ..+.++++|++|++++|.+....+..    +.++++|++|++++|.|+...+..+..      
T Consensus        58 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~i~~l~~~~~~~------  127 (606)
T 3t6q_A           58 NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA----LSGPKALKHLFFIQTGISSIDFIPLHN------  127 (606)
T ss_dssp             TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT----TSSCTTCCEEECTTSCCSCGGGSCCTT------
T ss_pred             cceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh----hcccccccEeeccccCcccCCcchhcc------
Confidence            5677888888877654 45668899999999999865443322    568899999999999988654444322      


Q ss_pred             cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCc--EEeccCCCCC
Q 013056          242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLS--ILDLSGNSIG  319 (450)
Q Consensus       242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~--~L~Ls~n~l~  319 (450)
                        +.+|++|++++|.++.....        .+..+++|++|++++|.+++..+..+     ..+++|+  +|++++|.+.
T Consensus       128 --l~~L~~L~L~~n~l~~~~~~--------~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~l~L~l~~n~l~  192 (606)
T 3t6q_A          128 --QKTLESLYLGSNHISSIKLP--------KGFPTEKLKVLDFQNNAIHYLSKEDM-----SSLQQATNLSLNLNGNDIA  192 (606)
T ss_dssp             --CTTCCEEECCSSCCCCCCCC--------TTCCCTTCCEEECCSSCCCEECHHHH-----HTTTTCCSEEEECTTCCCC
T ss_pred             --CCcccEEECCCCcccccCcc--------cccCCcccCEEEcccCcccccChhhh-----hhhcccceeEEecCCCccC
Confidence              68999999999998874321        22348999999999999988666555     3478888  8999999887


Q ss_pred             Ccc
Q 013056          320 GWL  322 (450)
Q Consensus       320 ~~~  322 (450)
                      +..
T Consensus       193 ~~~  195 (606)
T 3t6q_A          193 GIE  195 (606)
T ss_dssp             EEC
T ss_pred             ccC
Confidence            643

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.80  E-value=1.2e-20  Score=191.31  Aligned_cols=232  Identities=17%  Similarity=0.113  Sum_probs=167.9

Q ss_pred             chhhcccccCcchhh-hHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056          163 YARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  241 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~-~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~  241 (450)
                      .++.++++++.+..+ +..+.++++|++|+|++|.+......    .+.++++|+.|+|++|.++...+..+..      
T Consensus        57 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~------  126 (477)
T 2id5_A           57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG----VFTGLSNLTKLDISENKIVILLDYMFQD------  126 (477)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT----SSTTCTTCCEEECTTSCCCEECTTTTTT------
T ss_pred             CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc----cccCCCCCCEEECCCCccccCChhHccc------
Confidence            567777888777765 34555778888888888875543322    2467788888888888887654433322      


Q ss_pred             cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCc
Q 013056          242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW  321 (450)
Q Consensus       242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~  321 (450)
                        +.+|++|++++|.++.        ..+..+..+++|++|+|++|.+++..+..+     ..+++|+.|++++|.+.+.
T Consensus       127 --l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~i~~~  191 (477)
T 2id5_A          127 --LYNLKSLEVGDNDLVY--------ISHRAFSGLNSLEQLTLEKCNLTSIPTEAL-----SHLHGLIVLRLRHLNINAI  191 (477)
T ss_dssp             --CTTCCEEEECCTTCCE--------ECTTSSTTCTTCCEEEEESCCCSSCCHHHH-----TTCTTCCEEEEESCCCCEE
T ss_pred             --cccCCEEECCCCccce--------eChhhccCCCCCCEEECCCCcCcccChhHh-----cccCCCcEEeCCCCcCcEe
Confidence              6788888888888876        334456678888889988888877444333     4578899999998888764


Q ss_pred             ccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCC
Q 013056          322 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN  401 (450)
Q Consensus       322 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~  401 (450)
                      .+           ..+..+++|+.|++++|.+..    .++.......+|++|+|++|.++.      +|.  ..+..++
T Consensus       192 ~~-----------~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~------~~~--~~~~~l~  248 (477)
T 2id5_A          192 RD-----------YSFKRLYRLKVLEISHWPYLD----TMTPNCLYGLNLTSLSITHCNLTA------VPY--LAVRHLV  248 (477)
T ss_dssp             CT-----------TCSCSCTTCCEEEEECCTTCC----EECTTTTTTCCCSEEEEESSCCCS------CCH--HHHTTCT
T ss_pred             Ch-----------hhcccCcccceeeCCCCcccc----ccCcccccCccccEEECcCCcccc------cCH--HHhcCcc
Confidence            33           334467889999999986554    355555666789999999999987      332  4567789


Q ss_pred             CcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056          402 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       402 ~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                      +|++|+|++|.|+..    .+..+..+ .+|++|+|++|.+++..+
T Consensus       249 ~L~~L~Ls~n~l~~~----~~~~~~~l-~~L~~L~L~~n~l~~~~~  289 (477)
T 2id5_A          249 YLRFLNLSYNPISTI----EGSMLHEL-LRLQEIQLVGGQLAVVEP  289 (477)
T ss_dssp             TCCEEECCSSCCCEE----CTTSCTTC-TTCCEEECCSSCCSEECT
T ss_pred             ccCeeECCCCcCCcc----Chhhcccc-ccCCEEECCCCccceECH
Confidence            999999999999875    23345554 349999999999987654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.80  E-value=3.5e-20  Score=177.37  Aligned_cols=210  Identities=22%  Similarity=0.167  Sum_probs=158.5

Q ss_pred             chhhcccccCcch-hhhHhh--hcCCCccEEEeecccChHHHHHHHHHH-HhcCCCccEEEccCCCCChhHHHHHHHHHh
Q 013056          163 YARCLRLQNALCV-EETCQL--LRESKLQSLVLRWIRFEEHVQALCKLL-IQNSETLASLEFLHCKLSPSFVEGICRSLC  238 (450)
Q Consensus       163 ~l~~l~L~~~~~~-~~~~~l--~~~~~L~~L~Ls~n~~~~~~~~l~~~l-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  238 (450)
                      .++.++++++.+. .++..+  ..+++|++|++++|.+... +..+..+ ....++|++|++++|.|+...+..+..   
T Consensus        96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~---  171 (312)
T 1wwl_A           96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV---  171 (312)
T ss_dssp             CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC---
T ss_pred             CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc---
Confidence            5667788888776 355554  5789999999999997665 2222222 112389999999999998655444432   


Q ss_pred             ccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhh--cCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCC
Q 013056          239 SKRKRIHKIENLSIDISSFIENCPSSVVVELVSFL--SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN  316 (450)
Q Consensus       239 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l--~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n  316 (450)
                           +++|++|++++|++++      ...++..+  ..+++|++|+|++|.+++.  ..+...++..+++|++|++++|
T Consensus       172 -----l~~L~~L~Ls~N~l~~------~~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~~l~~L~~L~Ls~N  238 (312)
T 1wwl_A          172 -----FPALSTLDLSDNPELG------ERGLISALCPLKFPTLQVLALRNAGMETP--SGVCSALAAARVQLQGLDLSHN  238 (312)
T ss_dssp             -----CSSCCEEECCSCTTCH------HHHHHHHSCTTSCTTCCEEECTTSCCCCH--HHHHHHHHHTTCCCSEEECTTS
T ss_pred             -----CCCCCEEECCCCCcCc------chHHHHHHHhccCCCCCEEECCCCcCcch--HHHHHHHHhcCCCCCEEECCCC
Confidence                 6899999999999865      01234444  7899999999999999852  1233444566899999999999


Q ss_pred             CCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhh
Q 013056          317 SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA  396 (450)
Q Consensus       317 ~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~  396 (450)
                      .+++..+          ...+..+++|+.|+|++|.|+.     +|..+.  ++|++|+|++|+|++      +|   . 
T Consensus       239 ~l~~~~~----------~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~--~~L~~L~Ls~N~l~~------~p---~-  291 (312)
T 1wwl_A          239 SLRDAAG----------APSCDWPSQLNSLNLSFTGLKQ-----VPKGLP--AKLSVLDLSYNRLDR------NP---S-  291 (312)
T ss_dssp             CCCSSCC----------CSCCCCCTTCCEEECTTSCCSS-----CCSSCC--SEEEEEECCSSCCCS------CC---C-
T ss_pred             cCCcccc----------hhhhhhcCCCCEEECCCCccCh-----hhhhcc--CCceEEECCCCCCCC------Ch---h-
Confidence            9987432          1233456899999999999995     676665  899999999999988      44   3 


Q ss_pred             cCCCCCcCEEEccCCCCChh
Q 013056          397 SERCNPLVELYLENCELSGR  416 (450)
Q Consensus       397 l~~~~~L~~L~L~~n~l~~~  416 (450)
                      +..+++|++|++++|+|++.
T Consensus       292 ~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          292 PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             TTTSCEEEEEECTTCTTTCC
T ss_pred             HhhCCCCCEEeccCCCCCCC
Confidence            67889999999999999864

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.80  E-value=3.9e-21  Score=200.37  Aligned_cols=231  Identities=21%  Similarity=0.206  Sum_probs=170.9

Q ss_pred             chhhcccccCcchhhhHhh-hcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056          163 YARCLRLQNALCVEETCQL-LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  241 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l-~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~  241 (450)
                      .++.|++++|.+..++... .++++|+.|+|++|.+.......    +.++++|+.|+|++|.|+...+..+..      
T Consensus       100 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~------  169 (597)
T 3oja_B          100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI----FHNTPKLTTLSMSNNNLERIEDDTFQA------  169 (597)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCBCCTTTTTT------
T ss_pred             CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHH----hccCCCCCEEEeeCCcCCCCChhhhhc------
Confidence            5678899999988877665 58899999999999976543332    578899999999999998765544433      


Q ss_pred             cCCCCeeEEEcCCCCCCCCCchhhHHHHH--------Hhhc---------------------CCCCCCEEecCCCCCChh
Q 013056          242 KRIHKIENLSIDISSFIENCPSSVVVELV--------SFLS---------------------SGRSLCSLKLRHCHLDRD  292 (450)
Q Consensus       242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~--------~~l~---------------------~~~~L~~L~Ls~n~l~~~  292 (450)
                        +++|++|++++|.++......++....        ..+.                     ..++|+.|+|++|.+++.
T Consensus       170 --l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~  247 (597)
T 3oja_B          170 --TTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT  247 (597)
T ss_dssp             --CTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC
T ss_pred             --CCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC
Confidence              689999999999998854321110000        0000                     012466666666666652


Q ss_pred             HHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCC
Q 013056          293 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLE  372 (450)
Q Consensus       293 ~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  372 (450)
                        ..     +..+++|++|+|++|.+.+..+        ..++   .+++|+.|+|++|.++.     ++..+..+++|+
T Consensus       248 --~~-----l~~l~~L~~L~Ls~N~l~~~~~--------~~~~---~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~  304 (597)
T 3oja_B          248 --AW-----LLNYPGLVEVDLSYNELEKIMY--------HPFV---KMQRLERLYISNNRLVA-----LNLYGQPIPTLK  304 (597)
T ss_dssp             --GG-----GGGCTTCSEEECCSSCCCEEES--------GGGT---TCSSCCEEECTTSCCCE-----EECSSSCCTTCC
T ss_pred             --hh-----hccCCCCCEEECCCCccCCCCH--------HHhc---CccCCCEEECCCCCCCC-----CCcccccCCCCc
Confidence              11     2457899999999999987555        4555   67899999999999997     666677899999


Q ss_pred             EEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056          373 ILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF  445 (450)
Q Consensus       373 ~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~  445 (450)
                      .|+|++|.++.      +|   ..+..+++|++|+|++|.|+...       +..+ .+|+.|++++|++.+.
T Consensus       305 ~L~Ls~N~l~~------i~---~~~~~l~~L~~L~L~~N~l~~~~-------~~~~-~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          305 VLDLSHNHLLH------VE---RNQPQFDRLENLYLDHNSIVTLK-------LSTH-HTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             EEECCSSCCCC------CG---GGHHHHTTCSEEECCSSCCCCCC-------CCTT-CCCSEEECCSSCEEHH
T ss_pred             EEECCCCCCCc------cC---cccccCCCCCEEECCCCCCCCcC-------hhhc-CCCCEEEeeCCCCCCh
Confidence            99999999986      44   33455689999999999998842       4443 3599999999998754

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.80  E-value=4.7e-21  Score=183.27  Aligned_cols=216  Identities=16%  Similarity=0.064  Sum_probs=151.4

Q ss_pred             cCCCccEEEeecccChHHHHHHHHHHH--hcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCC
Q 013056          183 RESKLQSLVLRWIRFEEHVQALCKLLI--QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIEN  260 (450)
Q Consensus       183 ~~~~L~~L~Ls~n~~~~~~~~l~~~l~--~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~  260 (450)
                      ..++|++|++++|.+....+..    +  .++++|++|++++|.+++..+..-...+..    +++|++|++++|.++. 
T Consensus        89 ~~~~L~~L~l~~n~l~~~~~~~----~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~----~~~L~~L~Ls~n~l~~-  159 (310)
T 4glp_A           89 AYSRLKELTLEDLKITGTMPPL----PLEATGLALSSLRLRNVSWATGRSWLAELQQWL----KPGLKVLSIAQAHSPA-  159 (310)
T ss_dssp             HHSCCCEEEEESCCCBSCCCCC----SSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB----CSCCCEEEEECCSSCC-
T ss_pred             ccCceeEEEeeCCEeccchhhh----hhhccCCCCCEEEeecccccchhhhhHHHHhhh----ccCCCEEEeeCCCcch-
Confidence            4467999999999865443321    2  577899999999999886432111112221    6889999999999977 


Q ss_pred             CchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHh-hhCCCC
Q 013056          261 CPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFS-LGAGKS  339 (450)
Q Consensus       261 ~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~-l~~~~~  339 (450)
                             ..+..++.+++|++|+|++|++.+...... ......+++|++|+|++|.++....      .+.. +.   .
T Consensus       160 -------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~------~~~~l~~---~  222 (310)
T 4glp_A          160 -------FSCEQVRAFPALTSLDLSDNPGLGERGLMA-ALCPHKFPAIQNLALRNTGMETPTG------VCAALAA---A  222 (310)
T ss_dssp             -------CCTTSCCCCTTCCEEECCSCTTCHHHHHHT-TSCTTSSCCCCSCBCCSSCCCCHHH------HHHHHHH---H
T ss_pred             -------hhHHHhccCCCCCEEECCCCCCccchhhhH-HHhhhcCCCCCEEECCCCCCCchHH------HHHHHHh---c
Confidence                   344567788999999999998765321110 1112457889999999999875211      1122 23   4


Q ss_pred             CCceeEEEccCCCCChhhHHHHHHHhhcC---CCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChh
Q 013056          340 LQSLRLLNLRGNNLCKADARDLGSALVHI---PNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR  416 (450)
Q Consensus       340 l~~L~~L~L~~n~l~~~~~~~l~~~l~~~---~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~  416 (450)
                      +++|++|+|++|.|++    ..|..+..+   ++|++|+|++|+|+.      +|   ..+.  ++|++|+|++|+|+..
T Consensus       223 l~~L~~L~Ls~N~l~~----~~p~~~~~~~~~~~L~~L~Ls~N~l~~------lp---~~~~--~~L~~L~Ls~N~l~~~  287 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRA----TVNPSAPRCMWSSALNSLNLSFAGLEQ------VP---KGLP--AKLRVLDLSSNRLNRA  287 (310)
T ss_dssp             TCCCSSEECTTSCCCC----CCCSCCSSCCCCTTCCCEECCSSCCCS------CC---SCCC--SCCSCEECCSCCCCSC
T ss_pred             CCCCCEEECCCCCCCc----cchhhHHhccCcCcCCEEECCCCCCCc------hh---hhhc--CCCCEEECCCCcCCCC
Confidence            5889999999999987    235556655   699999999999986      55   3343  7999999999999873


Q ss_pred             HHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 013056          417 GVSQLLDTLSTLRRPPTSLSIADNNLGRFC  446 (450)
Q Consensus       417 g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~  446 (450)
                           +. +..+ .+|++|++++|+|++.+
T Consensus       288 -----~~-~~~l-~~L~~L~L~~N~l~~~g  310 (310)
T 4glp_A          288 -----PQ-PDEL-PEVDNLTLDGNPFLVPG  310 (310)
T ss_dssp             -----CC-TTSC-CCCSCEECSSTTTSCCC
T ss_pred             -----ch-hhhC-CCccEEECcCCCCCCCC
Confidence                 21 3443 44999999999998753

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.80  E-value=2.8e-21  Score=186.61  Aligned_cols=231  Identities=17%  Similarity=0.120  Sum_probs=122.5

Q ss_pred             chhhcccccCcchhhhH-hhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056          163 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  241 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~  241 (450)
                      .++.++++++.+..++. .+.++++|++|++++|.+....+..    +.++++|++|++++|.++......         
T Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~---------  121 (332)
T 2ft3_A           55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA----FSPLRKLQKLYISKNHLVEIPPNL---------  121 (332)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG----STTCTTCCEEECCSSCCCSCCSSC---------
T ss_pred             CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH----hhCcCCCCEEECCCCcCCccCccc---------
Confidence            34455555555554433 3445566666666666544332211    345566666666666555211000         


Q ss_pred             cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCC----------------
Q 013056          242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEAS----------------  305 (450)
Q Consensus       242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~----------------  305 (450)
                        ..+|++|++++|.++..        ....+..+++|++|++++|.++..+...   ..+..+                
T Consensus       122 --~~~L~~L~l~~n~i~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~~l~L~~L~l~~n~l~~l~  188 (332)
T 2ft3_A          122 --PSSLVELRIHDNRIRKV--------PKGVFSGLRNMNCIEMGGNPLENSGFEP---GAFDGLKLNYLRISEAKLTGIP  188 (332)
T ss_dssp             --CTTCCEEECCSSCCCCC--------CSGGGSSCSSCCEEECCSCCCBGGGSCT---TSSCSCCCSCCBCCSSBCSSCC
T ss_pred             --cccCCEEECCCCccCcc--------CHhHhCCCccCCEEECCCCccccCCCCc---ccccCCccCEEECcCCCCCccC
Confidence              24566666666665542        2223445556666666666554311100   001111                


Q ss_pred             ----CCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCC
Q 013056          306 ----SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTI  381 (450)
Q Consensus       306 ----~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l  381 (450)
                          ++|++|++++|.+++..+           ..+..+++|+.|+|++|.++.    ..+..+..+++|++|+|++|++
T Consensus       189 ~~~~~~L~~L~l~~n~i~~~~~-----------~~l~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l  253 (332)
T 2ft3_A          189 KDLPETLNELHLDHNKIQAIEL-----------EDLLRYSKLYRLGLGHNQIRM----IENGSLSFLPTLRELHLDNNKL  253 (332)
T ss_dssp             SSSCSSCSCCBCCSSCCCCCCT-----------TSSTTCTTCSCCBCCSSCCCC----CCTTGGGGCTTCCEEECCSSCC
T ss_pred             ccccCCCCEEECCCCcCCccCH-----------HHhcCCCCCCEEECCCCcCCc----CChhHhhCCCCCCEEECCCCcC
Confidence                345555555555554222           223356777777888877776    2233567777888888888877


Q ss_pred             ChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHH-hcCCCCCcEEECcCCCCC
Q 013056          382 EDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTL-STLRRPPTSLSIADNNLG  443 (450)
Q Consensus       382 ~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l-~~l~~~L~~L~L~~N~l~  443 (450)
                      +.      +|   ..+..+++|++|++++|.|+..+...+.... ......|+.|++++|++.
T Consensus       254 ~~------lp---~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          254 SR------VP---AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CB------CC---TTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             ee------cC---hhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence            75      44   4466677788888888877764322221110 000234777888888776

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.79  E-value=1.6e-20  Score=188.37  Aligned_cols=224  Identities=18%  Similarity=0.127  Sum_probs=171.5

Q ss_pred             ccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCe
Q 013056          168 RLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKI  247 (450)
Q Consensus       168 ~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L  247 (450)
                      ...+..+..+|..+.  ++++.|+|++|.+.......    +.++++|+.|+|++|.|+......+..        +.+|
T Consensus        49 ~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~i~~~~~~~--------l~~L  114 (440)
T 3zyj_A           49 ICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNS----FKHLRHLEILQLSRNHIRTIEIGAFNG--------LANL  114 (440)
T ss_dssp             ECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTT----TSSCSSCCEEECCSSCCCEECGGGGTT--------CSSC
T ss_pred             EeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHH----hhCCCCCCEEECCCCcCCccChhhccC--------CccC
Confidence            334444555554443  68999999999966543322    678999999999999998765544433        6899


Q ss_pred             eEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCc
Q 013056          248 ENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDR  327 (450)
Q Consensus       248 ~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~  327 (450)
                      ++|+|++|.++..        ....+..+++|++|+|++|.++......     +..+++|++|++++|+..+..+    
T Consensus       115 ~~L~L~~n~l~~~--------~~~~~~~l~~L~~L~L~~N~i~~~~~~~-----~~~l~~L~~L~l~~~~~l~~i~----  177 (440)
T 3zyj_A          115 NTLELFDNRLTTI--------PNGAFVYLSKLKELWLRNNPIESIPSYA-----FNRIPSLRRLDLGELKRLSYIS----  177 (440)
T ss_dssp             CEEECCSSCCSSC--------CTTTSCSCSSCCEEECCSCCCCEECTTT-----TTTCTTCCEEECCCCTTCCEEC----
T ss_pred             CEEECCCCcCCee--------CHhHhhccccCceeeCCCCcccccCHHH-----hhhCcccCEeCCCCCCCcceeC----
Confidence            9999999999883        3346778999999999999998743322     3558999999999965443222    


Q ss_pred             ccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEE
Q 013056          328 SGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELY  407 (450)
Q Consensus       328 ~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~  407 (450)
                          .  ..+..+++|+.|+|++|+++.     +| .+..+++|++|+|++|.|++.     .|   ..+..+++|++|+
T Consensus       178 ----~--~~~~~l~~L~~L~L~~n~l~~-----~~-~~~~l~~L~~L~Ls~N~l~~~-----~~---~~~~~l~~L~~L~  237 (440)
T 3zyj_A          178 ----E--GAFEGLSNLRYLNLAMCNLRE-----IP-NLTPLIKLDELDLSGNHLSAI-----RP---GSFQGLMHLQKLW  237 (440)
T ss_dssp             ----T--TTTTTCSSCCEEECTTSCCSS-----CC-CCTTCSSCCEEECTTSCCCEE-----CT---TTTTTCTTCCEEE
T ss_pred             ----c--chhhcccccCeecCCCCcCcc-----cc-ccCCCcccCEEECCCCccCcc-----Ch---hhhccCccCCEEE
Confidence                1  234477999999999999996     54 478899999999999999873     23   6788899999999


Q ss_pred             ccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056          408 LENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       408 L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                      |++|.|+..    .+..+..+ .+|++|+|++|+|++..+
T Consensus       238 L~~n~l~~~----~~~~~~~l-~~L~~L~L~~N~l~~~~~  272 (440)
T 3zyj_A          238 MIQSQIQVI----ERNAFDNL-QSLVEINLAHNNLTLLPH  272 (440)
T ss_dssp             CTTCCCCEE----CTTSSTTC-TTCCEEECTTSCCCCCCT
T ss_pred             CCCCceeEE----ChhhhcCC-CCCCEEECCCCCCCccCh
Confidence            999999985    34456664 449999999999987543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.79  E-value=1.5e-20  Score=181.22  Aligned_cols=225  Identities=19%  Similarity=0.144  Sum_probs=135.4

Q ss_pred             chhhcccccCcchhhhH-hhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056          163 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  241 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~  241 (450)
                      .++.++++++.+..++. .+.++++|++|++++|.+....+..    +.++++|++|++++|.++.....        . 
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~l~~~--------~-  119 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA----FAPLVKLERLYLSKNQLKELPEK--------M-  119 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT----TTTCTTCCEEECCSSCCSBCCSS--------C-
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH----hcCCCCCCEEECCCCcCCccChh--------h-
Confidence            44556666666665554 3446677777777777654432211    45667777777777776632110        0 


Q ss_pred             cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCc
Q 013056          242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW  321 (450)
Q Consensus       242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~  321 (450)
                        ..+|++|++++|.++.        .....+..+++|++|++++|.++..+...   ..+..+++|++|++++|.++..
T Consensus       120 --~~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~~l~~L~~L~l~~n~l~~l  186 (330)
T 1xku_A          120 --PKTLQELRVHENEITK--------VRKSVFNGLNQMIVVELGTNPLKSSGIEN---GAFQGMKKLSYIRIADTNITTI  186 (330)
T ss_dssp             --CTTCCEEECCSSCCCB--------BCHHHHTTCTTCCEEECCSSCCCGGGBCT---TGGGGCTTCCEEECCSSCCCSC
T ss_pred             --cccccEEECCCCcccc--------cCHhHhcCCccccEEECCCCcCCccCcCh---hhccCCCCcCEEECCCCccccC
Confidence              2567777777777766        34445666777777777777765421110   1123467777777777776641


Q ss_pred             ccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCC
Q 013056          322 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN  401 (450)
Q Consensus       322 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~  401 (450)
                               |..+.     ++|++|++++|.++..    .+..+..+++|++|+|++|.+++.     .+   ..+..++
T Consensus       187 ---------~~~~~-----~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~-----~~---~~~~~l~  240 (330)
T 1xku_A          187 ---------PQGLP-----PSLTELHLDGNKITKV----DAASLKGLNNLAKLGLSFNSISAV-----DN---GSLANTP  240 (330)
T ss_dssp             ---------CSSCC-----TTCSEEECTTSCCCEE----CTGGGTTCTTCCEEECCSSCCCEE-----CT---TTGGGST
T ss_pred             ---------Ccccc-----ccCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCCCcCcee-----Ch---hhccCCC
Confidence                     12111     5677777777777652    245566777777777777777652     11   3455567


Q ss_pred             CcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056          402 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF  445 (450)
Q Consensus       402 ~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~  445 (450)
                      +|++|++++|.++.     ++..+..+ .+|++|++++|+|++.
T Consensus       241 ~L~~L~L~~N~l~~-----lp~~l~~l-~~L~~L~l~~N~i~~~  278 (330)
T 1xku_A          241 HLRELHLNNNKLVK-----VPGGLADH-KYIQVVYLHNNNISAI  278 (330)
T ss_dssp             TCCEEECCSSCCSS-----CCTTTTTC-SSCCEEECCSSCCCCC
T ss_pred             CCCEEECCCCcCcc-----CChhhccC-CCcCEEECCCCcCCcc
Confidence            77777777777774     45555553 3477777777777654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.79  E-value=2.1e-20  Score=188.32  Aligned_cols=223  Identities=19%  Similarity=0.124  Sum_probs=170.3

Q ss_pred             cccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCee
Q 013056          169 LQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIE  248 (450)
Q Consensus       169 L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~  248 (450)
                      ..+..+..+|..+.  ++++.|+|++|.+.......    +.++++|+.|+|++|.|+...+..+..        +.+|+
T Consensus        61 c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~--------l~~L~  126 (452)
T 3zyi_A           61 CTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADT----FRHLHHLEVLQLGRNSIRQIEVGAFNG--------LASLN  126 (452)
T ss_dssp             CCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTTT--------CTTCC
T ss_pred             ECCCCcCccCCCCC--CCccEEECcCCcCceECHHH----cCCCCCCCEEECCCCccCCcChhhccC--------cccCC
Confidence            34444444444332  68999999999966543332    578999999999999998765544433        68999


Q ss_pred             EEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcc
Q 013056          249 NLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRS  328 (450)
Q Consensus       249 ~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~  328 (450)
                      +|+|++|.++.        .....+..+++|++|+|++|.++......     +..+++|++|++++|...+..+     
T Consensus       127 ~L~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----~~~l~~L~~L~l~~~~~l~~i~-----  188 (452)
T 3zyi_A          127 TLELFDNWLTV--------IPSGAFEYLSKLRELWLRNNPIESIPSYA-----FNRVPSLMRLDLGELKKLEYIS-----  188 (452)
T ss_dssp             EEECCSSCCSB--------CCTTTSSSCTTCCEEECCSCCCCEECTTT-----TTTCTTCCEEECCCCTTCCEEC-----
T ss_pred             EEECCCCcCCc--------cChhhhcccCCCCEEECCCCCcceeCHhH-----HhcCCcccEEeCCCCCCccccC-----
Confidence            99999999987        33445778999999999999998643322     3558999999999965443222     


Q ss_pred             cHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEc
Q 013056          329 GPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYL  408 (450)
Q Consensus       329 ~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L  408 (450)
                         .  ..+..+++|+.|+|++|+++.     ++ .+..+++|++|+|++|.|++.     .|   ..+..+++|++|+|
T Consensus       189 ---~--~~~~~l~~L~~L~L~~n~l~~-----~~-~~~~l~~L~~L~Ls~N~l~~~-----~~---~~~~~l~~L~~L~L  249 (452)
T 3zyi_A          189 ---E--GAFEGLFNLKYLNLGMCNIKD-----MP-NLTPLVGLEELEMSGNHFPEI-----RP---GSFHGLSSLKKLWV  249 (452)
T ss_dssp             ---T--TTTTTCTTCCEEECTTSCCSS-----CC-CCTTCTTCCEEECTTSCCSEE-----CG---GGGTTCTTCCEEEC
T ss_pred             ---h--hhccCCCCCCEEECCCCcccc-----cc-cccccccccEEECcCCcCccc-----Cc---ccccCccCCCEEEe
Confidence               1  234477999999999999986     43 478899999999999999873     33   67888999999999


Q ss_pred             cCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056          409 ENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       409 ~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                      ++|.|+..    .+..+..+ .+|++|+|++|.|++..+
T Consensus       250 ~~n~l~~~----~~~~~~~l-~~L~~L~L~~N~l~~~~~  283 (452)
T 3zyi_A          250 MNSQVSLI----ERNAFDGL-ASLVELNLAHNNLSSLPH  283 (452)
T ss_dssp             TTSCCCEE----CTTTTTTC-TTCCEEECCSSCCSCCCT
T ss_pred             CCCcCceE----CHHHhcCC-CCCCEEECCCCcCCccCh
Confidence            99999885    34556664 449999999999986543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.79  E-value=1.2e-20  Score=198.12  Aligned_cols=134  Identities=14%  Similarity=0.085  Sum_probs=89.9

Q ss_pred             chhhcccccCcchh------------------hhHhhh--cCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccC
Q 013056          163 YARCLRLQNALCVE------------------ETCQLL--RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLH  222 (450)
Q Consensus       163 ~l~~l~L~~~~~~~------------------~~~~l~--~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~  222 (450)
                      .++.++++++.+..                  +|..+.  ++++|++|++++|.+...++..    +.++++|+.|++++
T Consensus       207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~  282 (636)
T 4eco_A          207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF----LKALPEMQLINVAC  282 (636)
T ss_dssp             TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT----TTTCSSCCEEECTT
T ss_pred             CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH----HhcCCCCCEEECcC
Confidence            56677777777776                  777777  7888888888888754443322    56778888888888


Q ss_pred             CC-CCh-hHHHHHHHH--HhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHH--hhcCCCCCCEEecCCCCCChhHHHH
Q 013056          223 CK-LSP-SFVEGICRS--LCSKRKRIHKIENLSIDISSFIENCPSSVVVELVS--FLSSGRSLCSLKLRHCHLDRDFGRM  296 (450)
Q Consensus       223 n~-l~~-~~~~~l~~~--L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~--~l~~~~~L~~L~Ls~n~l~~~~~~~  296 (450)
                      |. +++ ..+..+...  +..    +++|++|++++|.++.         ++.  .++.+++|++|++++|.+++..+ .
T Consensus       283 n~~l~~~~lp~~~~~L~~~~~----l~~L~~L~L~~n~l~~---------ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~  348 (636)
T 4eco_A          283 NRGISGEQLKDDWQALADAPV----GEKIQIIYIGYNNLKT---------FPVETSLQKMKKLGMLECLYNQLEGKLP-A  348 (636)
T ss_dssp             CTTSCHHHHHHHHHHHHHSGG----GGTCCEEECCSSCCSS---------CCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred             CCCCccccchHHHHhhhcccc----CCCCCEEECCCCcCCc---------cCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence            87 877 566665441  011    3678888888887775         333  56677788888888887775444 2


Q ss_pred             HHHHHhhCCCCCcEEeccCCCCC
Q 013056          297 VFSSLLEASSSLSILDLSGNSIG  319 (450)
Q Consensus       297 l~~~L~~~~~~L~~L~Ls~n~l~  319 (450)
                      +     ..+++|++|++++|.++
T Consensus       349 ~-----~~l~~L~~L~L~~N~l~  366 (636)
T 4eco_A          349 F-----GSEIKLASLNLAYNQIT  366 (636)
T ss_dssp             C-----EEEEEESEEECCSSEEE
T ss_pred             h-----CCCCCCCEEECCCCccc
Confidence            2     33456666666666555

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.79  E-value=3e-18  Score=178.27  Aligned_cols=237  Identities=16%  Similarity=0.119  Sum_probs=176.0

Q ss_pred             ccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCe
Q 013056          168 RLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKI  247 (450)
Q Consensus       168 ~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L  247 (450)
                      .+..+....++..+..+++|++|++++|.+....   ...++..+++|+.|+++ +.+++.+...+...       +++|
T Consensus       276 ~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~---~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~-------~~~L  344 (592)
T 3ogk_B          276 GLSYMGPNEMPILFPFAAQIRKLDLLYALLETED---HCTLIQKCPNLEVLETR-NVIGDRGLEVLAQY-------CKQL  344 (592)
T ss_dssp             EETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHH---HHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHH-------CTTC
T ss_pred             CccccchhHHHHHHhhcCCCcEEecCCCcCCHHH---HHHHHHhCcCCCEEecc-CccCHHHHHHHHHh-------CCCC
Confidence            3334434445555567899999999999854332   22346789999999999 67787777777665       7889


Q ss_pred             eEEEcCC-----------CCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEecc--
Q 013056          248 ENLSIDI-----------SSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLS--  314 (450)
Q Consensus       248 ~~L~L~~-----------n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls--  314 (450)
                      ++|++++           +.+++       ..+......+++|++|+++.|.+++.++..+...    +++|++|+++  
T Consensus       345 ~~L~L~~g~~~~~~~~~~~~~~~-------~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~----~~~L~~L~l~~~  413 (592)
T 3ogk_B          345 KRLRIERGADEQGMEDEEGLVSQ-------RGLIALAQGCQELEYMAVYVSDITNESLESIGTY----LKNLCDFRLVLL  413 (592)
T ss_dssp             CEEEEECCCCSSTTSSTTCCCCH-------HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHH----CCSCCEEEEEEC
T ss_pred             CEEEeecCccccccccccCccCH-------HHHHHHHhhCccCeEEEeecCCccHHHHHHHHhh----CCCCcEEEEeec
Confidence            9999993           56655       1344556678999999999999999888877654    7899999997  


Q ss_pred             --CCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCC--CChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHH
Q 013056          315 --GNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNN--LCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLI  390 (450)
Q Consensus       315 --~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~--l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~  390 (450)
                        .|.+++...   ...++..+.   ++++|+.|+++.|.  +++.++..+   ...+++|++|+|++|.+++.|+..+ 
T Consensus       414 ~~~n~l~~~p~---~~~~~~~~~---~~~~L~~L~L~~~~~~l~~~~~~~~---~~~~~~L~~L~L~~n~l~~~~~~~~-  483 (592)
T 3ogk_B          414 DREERITDLPL---DNGVRSLLI---GCKKLRRFAFYLRQGGLTDLGLSYI---GQYSPNVRWMLLGYVGESDEGLMEF-  483 (592)
T ss_dssp             SCCSCCSSCCC---HHHHHHHHH---HCTTCCEEEEECCGGGCCHHHHHHH---HHSCTTCCEEEECSCCSSHHHHHHH-
T ss_pred             CCCccccCchH---HHHHHHHHH---hCCCCCEEEEecCCCCccHHHHHHH---HHhCccceEeeccCCCCCHHHHHHH-
Confidence              556665210   011333344   46899999998664  888665444   3458899999999999999876655 


Q ss_pred             HHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 013056          391 PYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC  446 (450)
Q Consensus       391 ~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~  446 (450)
                            +..+++|++|+|++|.+++.++..+...+..    |++|++++|++++.+
T Consensus       484 ------~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~----L~~L~ls~n~it~~~  529 (592)
T 3ogk_B          484 ------SRGCPNLQKLEMRGCCFSERAIAAAVTKLPS----LRYLWVQGYRASMTG  529 (592)
T ss_dssp             ------HTCCTTCCEEEEESCCCBHHHHHHHHHHCSS----CCEEEEESCBCCTTC
T ss_pred             ------HhcCcccCeeeccCCCCcHHHHHHHHHhcCc----cCeeECcCCcCCHHH
Confidence                  4567999999999999998877766554433    999999999999874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.79  E-value=2.4e-20  Score=200.22  Aligned_cols=222  Identities=14%  Similarity=0.185  Sum_probs=113.3

Q ss_pred             hhHhhhcCCCccEEEeecccChHH-------------HHHHHHHHHh--cCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056          177 ETCQLLRESKLQSLVLRWIRFEEH-------------VQALCKLLIQ--NSETLASLEFLHCKLSPSFVEGICRSLCSKR  241 (450)
Q Consensus       177 ~~~~l~~~~~L~~L~Ls~n~~~~~-------------~~~l~~~l~~--~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~  241 (450)
                      +|..+.++++|+.|+|++|.+...             ....++..+.  ++++|+.|+|++|.+....+..+..      
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~------  513 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD------  513 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG------
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC------
Confidence            455555666666666666665440             0000111122  5666666666666665554443332      


Q ss_pred             cCCCCeeEEEcCCCC-CCCCCchhhHHHHH---HhhcCCCCCCEEecCCCCCChhHHH--HHHHHHhhCCCCCcEEeccC
Q 013056          242 KRIHKIENLSIDISS-FIENCPSSVVVELV---SFLSSGRSLCSLKLRHCHLDRDFGR--MVFSSLLEASSSLSILDLSG  315 (450)
Q Consensus       242 ~~~~~L~~L~L~~n~-i~~~~~~~~~~~l~---~~l~~~~~L~~L~Ls~n~l~~~~~~--~l~~~L~~~~~~L~~L~Ls~  315 (450)
                        +++|+.|++++|+ +++   ..++..+.   ..+..+++|++|+|++|.++ ..|.  .+     ..+++|++|+|++
T Consensus       514 --L~~L~~L~Ls~N~~lsg---~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l-----~~L~~L~~L~Ls~  582 (876)
T 4ecn_A          514 --LPELQSLNIACNRGISA---AQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASL-----QKMVKLGLLDCVH  582 (876)
T ss_dssp             --CSSCCEEECTTCTTSCH---HHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHH-----TTCTTCCEEECTT
T ss_pred             --CCCCCEEECcCCCCccc---ccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhh-----hcCCCCCEEECCC
Confidence              4666666666665 432   00111111   12233446666666666665 2433  22     3356666666666


Q ss_pred             CCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCC-CCEEecCCCCCChhhHHHHHHHHH
Q 013056          316 NSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN-LEILDISDNTIEDDGIRSLIPYFV  394 (450)
Q Consensus       316 n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-L~~L~Ls~N~l~~~g~~~l~~~l~  394 (450)
                      |.++.         +|    .+..+++|+.|+|++|.++.     +|..+..+++ |++|+|++|.++.      +|   
T Consensus       583 N~l~~---------lp----~~~~L~~L~~L~Ls~N~l~~-----lp~~l~~l~~~L~~L~Ls~N~L~~------lp---  635 (876)
T 4ecn_A          583 NKVRH---------LE----AFGTNVKLTDLKLDYNQIEE-----IPEDFCAFTDQVEGLGFSHNKLKY------IP---  635 (876)
T ss_dssp             SCCCB---------CC----CCCTTSEESEEECCSSCCSC-----CCTTSCEECTTCCEEECCSSCCCS------CC---
T ss_pred             CCccc---------ch----hhcCCCcceEEECcCCcccc-----chHHHhhccccCCEEECcCCCCCc------Cc---
Confidence            66652         22    22355666667776666663     5656666666 7777777766663      43   


Q ss_pred             hhcCCCC--CcCEEEccCCCCChhHHHHHHHHHhcC-CCCCcEEECcCCCCC
Q 013056          395 QASERCN--PLVELYLENCELSGRGVSQLLDTLSTL-RRPPTSLSIADNNLG  443 (450)
Q Consensus       395 ~~l~~~~--~L~~L~L~~n~l~~~g~~~l~~~l~~l-~~~L~~L~L~~N~l~  443 (450)
                      ..+...+  +|+.|+|++|.++... ..++..+..+ ..+|+.|+|++|.|+
T Consensus       636 ~~~~~~~~~~L~~L~Ls~N~l~g~i-p~l~~~l~~~~~~~L~~L~Ls~N~L~  686 (876)
T 4ecn_A          636 NIFNAKSVYVMGSVDFSYNKIGSEG-RNISCSMDDYKGINASTVTLSYNEIQ  686 (876)
T ss_dssp             SCCCTTCSSCEEEEECCSSCTTTTS-SSCSSCTTTCCCCCEEEEECCSSCCC
T ss_pred             hhhhccccCCCCEEECcCCcCCCcc-ccchhhhccccCCCcCEEEccCCcCC
Confidence            3333332  3667777777665420 0000011110 123677777777766

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.79  E-value=4.7e-21  Score=201.08  Aligned_cols=221  Identities=14%  Similarity=0.163  Sum_probs=157.6

Q ss_pred             CcchhhhHhhhcCCCccEEEeecccChHH-------------HHHHHHHHHh--cCCCccEEEccCCCCChhHHHHHHHH
Q 013056          172 ALCVEETCQLLRESKLQSLVLRWIRFEEH-------------VQALCKLLIQ--NSETLASLEFLHCKLSPSFVEGICRS  236 (450)
Q Consensus       172 ~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~-------------~~~l~~~l~~--~~~~L~~L~Ls~n~l~~~~~~~l~~~  236 (450)
                      +.+..+|..+.++++|++|+|++|.+...             .....+..+.  ++++|++|++++|.+....+..+.. 
T Consensus       193 n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~-  271 (636)
T 4eco_A          193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA-  271 (636)
T ss_dssp             CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT-
T ss_pred             CCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc-
Confidence            34444677777888999999998886652             0001111234  7888999999999888776655543 


Q ss_pred             HhccccCCCCeeEEEcCCCC-CCCCCchhhHHHHHHhhcC------CCCCCEEecCCCCCChhHHH--HHHHHHhhCCCC
Q 013056          237 LCSKRKRIHKIENLSIDISS-FIENCPSSVVVELVSFLSS------GRSLCSLKLRHCHLDRDFGR--MVFSSLLEASSS  307 (450)
Q Consensus       237 L~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~~l~~~l~~------~~~L~~L~Ls~n~l~~~~~~--~l~~~L~~~~~~  307 (450)
                             +++|++|++++|. +++       ..++..++.      +++|++|++++|.++ ..+.  .+     ..+++
T Consensus       272 -------l~~L~~L~Ls~n~~l~~-------~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l-----~~l~~  331 (636)
T 4eco_A          272 -------LPEMQLINVACNRGISG-------EQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL-----QKMKK  331 (636)
T ss_dssp             -------CSSCCEEECTTCTTSCH-------HHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH-----TTCTT
T ss_pred             -------CCCCCEEECcCCCCCcc-------ccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh-----ccCCC
Confidence                   6889999999887 543       024444444      388999999999887 3554  33     45788


Q ss_pred             CcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCC-CCEEecCCCCCChhhH
Q 013056          308 LSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN-LEILDISDNTIEDDGI  386 (450)
Q Consensus       308 L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-L~~L~Ls~N~l~~~g~  386 (450)
                      |++|++++|.+++.        +|    .+..+++|+.|++++|.++.     +|..+..+++ |++|++++|.++.   
T Consensus       332 L~~L~L~~N~l~g~--------ip----~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~~L~~L~Ls~N~l~~---  391 (636)
T 4eco_A          332 LGMLECLYNQLEGK--------LP----AFGSEIKLASLNLAYNQITE-----IPANFCGFTEQVENLSFAHNKLKY---  391 (636)
T ss_dssp             CCEEECCSCCCEEE--------CC----CCEEEEEESEEECCSSEEEE-----CCTTSEEECTTCCEEECCSSCCSS---
T ss_pred             CCEEeCcCCcCccc--------hh----hhCCCCCCCEEECCCCcccc-----ccHhhhhhcccCcEEEccCCcCcc---
Confidence            99999999988742        22    23356789999999998884     7788888888 9999999999885   


Q ss_pred             HHHHHHHHhhcCCC--CCcCEEEccCCCCChhHHHHHHHHHh-------cCCCCCcEEECcCCCCCc
Q 013056          387 RSLIPYFVQASERC--NPLVELYLENCELSGRGVSQLLDTLS-------TLRRPPTSLSIADNNLGR  444 (450)
Q Consensus       387 ~~l~~~l~~~l~~~--~~L~~L~L~~n~l~~~g~~~l~~~l~-------~l~~~L~~L~L~~N~l~~  444 (450)
                         +|   ..+...  ++|++|++++|.++..    .+..+.       . ..+|++|++++|.|++
T Consensus       392 ---lp---~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~~~~~~~~-~~~L~~L~Ls~N~l~~  447 (636)
T 4eco_A          392 ---IP---NIFDAKSVSVMSAIDFSYNEIGSV----DGKNFDPLDPTPFK-GINVSSINLSNNQISK  447 (636)
T ss_dssp             ---CC---SCCCTTCSSCEEEEECCSSCTTTT----TTCSSCTTCSSCCC-CCCEEEEECCSSCCCS
T ss_pred             ---cc---hhhhhcccCccCEEECcCCcCCCc----chhhhccccccccc-CCCCCEEECcCCccCc
Confidence               55   444443  3899999999998875    444444       3 2359999999999884

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.79  E-value=7e-21  Score=182.64  Aligned_cols=131  Identities=16%  Similarity=0.108  Sum_probs=59.7

Q ss_pred             CCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccc
Q 013056          245 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK  324 (450)
Q Consensus       245 ~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~  324 (450)
                      ++|++|++++|.++.        ..+..+..+++|++|++++|.+++..+..+.    ..+++|++|++++|.+++.   
T Consensus       120 ~~L~~L~l~~N~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----~~l~~L~~L~L~~N~l~~~---  184 (317)
T 3o53_A          120 QGKKNIYLANNKITM--------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELA----ASSDTLEHLNLQYNFIYDV---  184 (317)
T ss_dssp             SSCEEEECCSSCCCS--------GGGBCTGGGSSEEEEECTTSCCCEEEGGGGG----GGTTTCCEEECTTSCCCEE---
T ss_pred             CCCCEEECCCCCCCC--------ccchhhhccCCCCEEECCCCCCCcccHHHHh----hccCcCCEEECCCCcCccc---
Confidence            445555555555444        2222333445555555555555443322221    1234555555555554431   


Q ss_pred             cCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcC
Q 013056          325 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV  404 (450)
Q Consensus       325 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~  404 (450)
                                .....+++|++|+|++|.|+.     ++..+..+++|++|+|++|+|+.      +|   ..+..+++|+
T Consensus       185 ----------~~~~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~L~L~~N~l~~------l~---~~~~~l~~L~  240 (317)
T 3o53_A          185 ----------KGQVVFAKLKTLDLSSNKLAF-----MGPEFQSAAGVTWISLRNNKLVL------IE---KALRFSQNLE  240 (317)
T ss_dssp             ----------ECCCCCTTCCEEECCSSCCCE-----ECGGGGGGTTCSEEECTTSCCCE------EC---TTCCCCTTCC
T ss_pred             ----------ccccccccCCEEECCCCcCCc-----chhhhcccCcccEEECcCCcccc------hh---hHhhcCCCCC
Confidence                      011123455555555555553     33334455555555555555543      33   3344445555


Q ss_pred             EEEccCCCCC
Q 013056          405 ELYLENCELS  414 (450)
Q Consensus       405 ~L~L~~n~l~  414 (450)
                      .|++++|.++
T Consensus       241 ~L~l~~N~~~  250 (317)
T 3o53_A          241 HFDLRGNGFH  250 (317)
T ss_dssp             EEECTTCCCB
T ss_pred             EEEccCCCcc
Confidence            5555555554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.79  E-value=3.2e-20  Score=178.00  Aligned_cols=215  Identities=19%  Similarity=0.138  Sum_probs=154.1

Q ss_pred             chhhcccccCcchhhhH-hhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056          163 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  241 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~  241 (450)
                      .++.++++++.+..++. .+.++++|++|++++|.+....+      +..+++|++|++++|.|+...         .  
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~l~~L~~L~Ls~n~l~~l~---------~--   97 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQELL---------V--   97 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE------ETTCTTCCEEECCSSEEEEEE---------E--
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh------hhhcCCCCEEECcCCcccccc---------C--
Confidence            56677777777766553 45577888888888887654332      467788888888888776422         1  


Q ss_pred             cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCc
Q 013056          242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW  321 (450)
Q Consensus       242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~  321 (450)
                        .++|++|++++|.++....           ..+++|++|++++|.+++..+..+     ..+++|++|++++|.+++.
T Consensus        98 --~~~L~~L~l~~n~l~~~~~-----------~~~~~L~~L~l~~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           98 --GPSIETLHAANNNISRVSC-----------SRGQGKKNIYLANNKITMLRDLDE-----GCRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             --CTTCCEEECCSSCCSEEEE-----------CCCSSCEEEECCSSCCCSGGGBCT-----GGGSSEEEEECTTSCCCEE
T ss_pred             --CCCcCEEECCCCccCCcCc-----------cccCCCCEEECCCCCCCCccchhh-----hccCCCCEEECCCCCCCcc
Confidence              4778888888888876321           235788899999998887444333     3368899999999988864


Q ss_pred             ccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCC
Q 013056          322 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN  401 (450)
Q Consensus       322 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~  401 (450)
                      .+        ..+.  ..+++|++|+|++|.|+.     ++ ....+++|++|+|++|+|++      +|   ..+..++
T Consensus       160 ~~--------~~~~--~~l~~L~~L~L~~N~l~~-----~~-~~~~l~~L~~L~Ls~N~l~~------l~---~~~~~l~  214 (317)
T 3o53_A          160 NF--------AELA--ASSDTLEHLNLQYNFIYD-----VK-GQVVFAKLKTLDLSSNKLAF------MG---PEFQSAA  214 (317)
T ss_dssp             EG--------GGGG--GGTTTCCEEECTTSCCCE-----EE-CCCCCTTCCEEECCSSCCCE------EC---GGGGGGT
T ss_pred             cH--------HHHh--hccCcCCEEECCCCcCcc-----cc-cccccccCCEEECCCCcCCc------ch---hhhcccC
Confidence            33        2222  145788999999999886     32 23458889999999999887      43   3366678


Q ss_pred             CcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCC
Q 013056          402 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG  443 (450)
Q Consensus       402 ~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~  443 (450)
                      +|++|+|++|.|+.     ++..+..+ .+|+.|++++|++.
T Consensus       215 ~L~~L~L~~N~l~~-----l~~~~~~l-~~L~~L~l~~N~~~  250 (317)
T 3o53_A          215 GVTWISLRNNKLVL-----IEKALRFS-QNLEHFDLRGNGFH  250 (317)
T ss_dssp             TCSEEECTTSCCCE-----ECTTCCCC-TTCCEEECTTCCCB
T ss_pred             cccEEECcCCcccc-----hhhHhhcC-CCCCEEEccCCCcc
Confidence            99999999999886     55566663 45999999999987

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.79  E-value=1.9e-20  Score=179.02  Aligned_cols=213  Identities=19%  Similarity=0.139  Sum_probs=157.6

Q ss_pred             chhhcccccCcchhh-hHhh--hcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhc
Q 013056          163 YARCLRLQNALCVEE-TCQL--LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCS  239 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~-~~~l--~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~  239 (450)
                      .++.+++++|.+... +..+  ..+++|++|++++|.+......+....+..+++|++|++++|.|+...+..+..    
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~----  167 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA----  167 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC----
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc----
Confidence            366777777776543 3344  678999999999999765322222222457899999999999997654433322    


Q ss_pred             cccCCCCeeEEEcCCCCCCCCCchhhHHHHH--HhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCC
Q 013056          240 KRKRIHKIENLSIDISSFIENCPSSVVVELV--SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS  317 (450)
Q Consensus       240 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~--~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~  317 (450)
                          +++|++|++++|++...      ..+.  ..+..+++|++|+|++|.++.. + ..+..++..+++|++|+|++|.
T Consensus       168 ----l~~L~~L~Ls~N~l~~~------~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~-~~~~~l~~~l~~L~~L~Ls~N~  235 (310)
T 4glp_A          168 ----FPALTSLDLSDNPGLGE------RGLMAALCPHKFPAIQNLALRNTGMETP-T-GVCAALAAAGVQPHSLDLSHNS  235 (310)
T ss_dssp             ----CTTCCEEECCSCTTCHH------HHHHTTSCTTSSCCCCSCBCCSSCCCCH-H-HHHHHHHHHTCCCSSEECTTSC
T ss_pred             ----CCCCCEEECCCCCCccc------hhhhHHHhhhcCCCCCEEECCCCCCCch-H-HHHHHHHhcCCCCCEEECCCCC
Confidence                68999999999997651      1122  2236789999999999999752 2 2233444557999999999999


Q ss_pred             CCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhc
Q 013056          318 IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQAS  397 (450)
Q Consensus       318 l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l  397 (450)
                      +++..|        ..+..+..+++|++|+|++|+|+.     +|..+.  ++|++|+|++|+|++      +|    .+
T Consensus       236 l~~~~p--------~~~~~~~~~~~L~~L~Ls~N~l~~-----lp~~~~--~~L~~L~Ls~N~l~~------~~----~~  290 (310)
T 4glp_A          236 LRATVN--------PSAPRCMWSSALNSLNLSFAGLEQ-----VPKGLP--AKLRVLDLSSNRLNR------AP----QP  290 (310)
T ss_dssp             CCCCCC--------SCCSSCCCCTTCCCEECCSSCCCS-----CCSCCC--SCCSCEECCSCCCCS------CC----CT
T ss_pred             CCccch--------hhHHhccCcCcCCEEECCCCCCCc-----hhhhhc--CCCCEEECCCCcCCC------Cc----hh
Confidence            998544        445555445799999999999995     666554  799999999999987      43    25


Q ss_pred             CCCCCcCEEEccCCCCChh
Q 013056          398 ERCNPLVELYLENCELSGR  416 (450)
Q Consensus       398 ~~~~~L~~L~L~~n~l~~~  416 (450)
                      ..+++|+.|+|++|.|++.
T Consensus       291 ~~l~~L~~L~L~~N~l~~~  309 (310)
T 4glp_A          291 DELPEVDNLTLDGNPFLVP  309 (310)
T ss_dssp             TSCCCCSCEECSSTTTSCC
T ss_pred             hhCCCccEEECcCCCCCCC
Confidence            6779999999999999874

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.78  E-value=2.3e-20  Score=175.04  Aligned_cols=204  Identities=16%  Similarity=0.113  Sum_probs=155.2

Q ss_pred             hhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCC
Q 013056          181 LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIEN  260 (450)
Q Consensus       181 l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~  260 (450)
                      ...+++|+.|++++|.+.....      +..+++|++|++++|.+++.  ..+    ..    +++|++|++++|.++. 
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~~~------l~~l~~L~~L~l~~n~l~~~--~~l----~~----l~~L~~L~L~~n~l~~-   99 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSVQG------IQYLPNVRYLALGGNKLHDI--SAL----KE----LTNLTYLILTGNQLQS-   99 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCCTT------GGGCTTCCEEECTTSCCCCC--GGG----TT----CTTCCEEECTTSCCCC-
T ss_pred             cccccceeeeeeCCCCcccccc------cccCCCCcEEECCCCCCCCc--hhh----cC----CCCCCEEECCCCccCc-
Confidence            3356889999999988554321      46789999999999998863  122    22    6899999999999987 


Q ss_pred             CchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCC
Q 013056          261 CPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSL  340 (450)
Q Consensus       261 ~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l  340 (450)
                             ..+..+..+++|++|++++|.+++..+..+     ..+++|++|++++|.+++..+           ..+..+
T Consensus       100 -------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~-----------~~~~~l  156 (272)
T 3rfs_A          100 -------LPNGVFDKLTNLKELVLVENQLQSLPDGVF-----DKLTNLTYLNLAHNQLQSLPK-----------GVFDKL  156 (272)
T ss_dssp             -------CCTTTTTTCTTCCEEECTTSCCCCCCTTTT-----TTCTTCCEEECCSSCCCCCCT-----------TTTTTC
T ss_pred             -------cChhHhcCCcCCCEEECCCCcCCccCHHHh-----ccCCCCCEEECCCCccCccCH-----------HHhccC
Confidence                   334456788999999999999987443322     457899999999999886433           223467


Q ss_pred             CceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHH
Q 013056          341 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ  420 (450)
Q Consensus       341 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~  420 (450)
                      ++|+.|++++|+++.    ..+..+..+++|++|++++|.+++      ++.  ..+..+++|++|++++|.++..    
T Consensus       157 ~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~~L~l~~N~~~~~----  220 (272)
T 3rfs_A          157 TNLTELDLSYNQLQS----LPEGVFDKLTQLKDLRLYQNQLKS------VPD--GVFDRLTSLQYIWLHDNPWDCT----  220 (272)
T ss_dssp             TTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTCCEEECCSSCBCCC----
T ss_pred             ccCCEEECCCCCcCc----cCHHHhcCCccCCEEECCCCcCCc------cCH--HHHhCCcCCCEEEccCCCcccc----
Confidence            899999999999986    233446789999999999999987      321  4578889999999999998753    


Q ss_pred             HHHHHhcCCCCCcEEECcCCCCCccccc
Q 013056          421 LLDTLSTLRRPPTSLSIADNNLGRFCAN  448 (450)
Q Consensus       421 l~~~l~~l~~~L~~L~L~~N~l~~~~~~  448 (450)
                              ...|+.|+++.|.+++.+|.
T Consensus       221 --------~~~l~~l~~~~n~~~g~ip~  240 (272)
T 3rfs_A          221 --------CPGIRYLSEWINKHSGVVRN  240 (272)
T ss_dssp             --------TTTTHHHHHHHHHTGGGBBC
T ss_pred             --------CcHHHHHHHHHHhCCCcccC
Confidence                    22388888888888887774

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.78  E-value=1.4e-20  Score=196.55  Aligned_cols=163  Identities=18%  Similarity=0.183  Sum_probs=115.0

Q ss_pred             CCCeeEEEcCCCCCCCCCchhhHHHHH-HhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCc-
Q 013056          244 IHKIENLSIDISSFIENCPSSVVVELV-SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW-  321 (450)
Q Consensus       244 ~~~L~~L~L~~n~i~~~~~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~-  321 (450)
                      +++|++|++++|.++.        ..+ ..+..+++|++|++++|.+++..+..+     ..+++|++|++++|.+.+. 
T Consensus       398 l~~L~~L~l~~n~l~~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~  464 (606)
T 3vq2_A          398 LEELQHLDFQHSTLKR--------VTEFSAFLSLEKLLYLDISYTNTKIDFDGIF-----LGLTSLNTLKMAGNSFKDNT  464 (606)
T ss_dssp             CTTCCEEECTTSEEES--------TTTTTTTTTCTTCCEEECTTSCCEECCTTTT-----TTCTTCCEEECTTCEEGGGE
T ss_pred             CCCCCeeECCCCccCC--------ccChhhhhccccCCEEECcCCCCCccchhhh-----cCCCCCCEEECCCCcCCCcc
Confidence            4556666666665555        222 345566777777777777666444333     3467777777777776642 


Q ss_pred             ccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCC
Q 013056          322 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN  401 (450)
Q Consensus       322 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~  401 (450)
                      .+        .   .+..+++|+.|+|++|.++.    ..+..+..+++|++|+|++|++++.     .|   ..+..++
T Consensus       465 ~~--------~---~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~---~~~~~l~  521 (606)
T 3vq2_A          465 LS--------N---VFANTTNLTFLDLSKCQLEQ----ISWGVFDTLHRLQLLNMSHNNLLFL-----DS---SHYNQLY  521 (606)
T ss_dssp             EC--------S---CCTTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCSCE-----EG---GGTTTCT
T ss_pred             hH--------H---hhccCCCCCEEECCCCcCCc----cChhhhcccccCCEEECCCCcCCCc-----CH---HHccCCC
Confidence            22        2   33467889999999999887    3466788889999999999998873     34   5678888


Q ss_pred             CcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056          402 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       402 ~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                      +|++|++++|+|+.     ++..+..+.++|++|++++|++....+
T Consensus       522 ~L~~L~l~~N~l~~-----~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          522 SLSTLDCSFNRIET-----SKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             TCCEEECTTSCCCC-----EESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             cCCEEECCCCcCcc-----cCHhHhhhcccCcEEEccCCCcccCCc
Confidence            99999999999886     565577766569999999999876543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.78  E-value=2.4e-20  Score=175.15  Aligned_cols=209  Identities=16%  Similarity=0.114  Sum_probs=107.5

Q ss_pred             CCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchh
Q 013056          185 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS  264 (450)
Q Consensus       185 ~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~  264 (450)
                      ++|++|++++|.+.......    +.++++|++|++++|.++......+..        +++|++|++++|.++.     
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~-----   90 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQS--------LSHLSTLILTGNPIQS-----   90 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTT----TTTCTTCSEEECTTCCCCEECTTTTTT--------CTTCCEEECTTCCCCE-----
T ss_pred             CCccEEECCCCcccccCHhH----hccccCCcEEECCCCcCCccCHHHccC--------CcCCCEEECCCCccCc-----
Confidence            35666666666644332211    345566666666666665433322222        4566666666666655     


Q ss_pred             hHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCcee
Q 013056          265 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR  344 (450)
Q Consensus       265 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~  344 (450)
                         ..+..+..+++|++|++++|.+.+..+..     +..+++|++|++++|.+++..       +|..+.   .+++|+
T Consensus        91 ---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~-------l~~~~~---~l~~L~  152 (276)
T 2z62_A           91 ---LALGAFSGLSSLQKLVAVETNLASLENFP-----IGHLKTLKELNVAHNLIQSFK-------LPEYFS---NLTNLE  152 (276)
T ss_dssp             ---ECTTTTTTCTTCCEEECTTSCCCCSTTCC-----CTTCTTCCEEECCSSCCCCCC-------CCGGGG---GCTTCC
T ss_pred             ---cChhhhcCCccccEEECCCCCccccCchh-----cccCCCCCEEECcCCccceec-------Cchhhc---cCCCCC
Confidence               22334555666666666666665532211     233566666666666665421       113333   346666


Q ss_pred             EEEccCCCCChhhHHHHHHHhhcCCCCC----EEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHH
Q 013056          345 LLNLRGNNLCKADARDLGSALVHIPNLE----ILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ  420 (450)
Q Consensus       345 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~----~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~  420 (450)
                      +|++++|+++...    +..+..+++|+    +|++++|.++.      ++   .......+|++|++++|.++..    
T Consensus       153 ~L~Ls~N~l~~~~----~~~~~~l~~L~~l~l~L~ls~n~l~~------~~---~~~~~~~~L~~L~L~~n~l~~~----  215 (276)
T 2z62_A          153 HLDLSSNKIQSIY----CTDLRVLHQMPLLNLSLDLSLNPMNF------IQ---PGAFKEIRLKELALDTNQLKSV----  215 (276)
T ss_dssp             EEECCSSCCCEEC----GGGGHHHHTCTTCCEEEECCSSCCCE------EC---TTSSCSCCEEEEECCSSCCSCC----
T ss_pred             EEECCCCCCCcCC----HHHhhhhhhccccceeeecCCCcccc------cC---ccccCCCcccEEECCCCceeec----
Confidence            6666666666521    12222223333    66666666655      22   1122223666666666666652    


Q ss_pred             HHHHHhcCCCCCcEEECcCCCCCccc
Q 013056          421 LLDTLSTLRRPPTSLSIADNNLGRFC  446 (450)
Q Consensus       421 l~~~l~~l~~~L~~L~L~~N~l~~~~  446 (450)
                      ....+..+ .+|++|++++|+++...
T Consensus       216 ~~~~~~~l-~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          216 PDGIFDRL-TSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             CTTTTTTC-CSCCEEECCSSCBCCCT
T ss_pred             CHhHhccc-ccccEEEccCCcccccC
Confidence            11223332 33666666666666544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.77  E-value=1e-19  Score=177.16  Aligned_cols=225  Identities=16%  Similarity=0.151  Sum_probs=166.2

Q ss_pred             chhhcccccCcchhhhHh-hhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCC-CCChhHHHHHHHHHhcc
Q 013056          163 YARCLRLQNALCVEETCQ-LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLCSK  240 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~-l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~  240 (450)
                      .++.+++++|.+..++.. +.++++|++|++++|.+......   ..+.++++|+.|++++| .++...+..+..     
T Consensus       101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-----  172 (353)
T 2z80_A          101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET---SLFSHLTKLQILRVGNMDTFTKIQRKDFAG-----  172 (353)
T ss_dssp             TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSS---CSCTTCTTCCEEEEEESSSCCEECTTTTTT-----
T ss_pred             CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCch---hhhccCCCCcEEECCCCccccccCHHHccC-----
Confidence            467778888888777766 45778888888888875532210   12457788888888888 465443333322     


Q ss_pred             ccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCC
Q 013056          241 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  320 (450)
Q Consensus       241 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~  320 (450)
                         +++|++|++++|.++.        ..+..+..+++|++|++++|.++. .+..+.    ..+++|++|++++|.+++
T Consensus       173 ---l~~L~~L~l~~n~l~~--------~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~----~~~~~L~~L~L~~n~l~~  236 (353)
T 2z80_A          173 ---LTFLEELEIDASDLQS--------YEPKSLKSIQNVSHLILHMKQHIL-LLEIFV----DVTSSVECLELRDTDLDT  236 (353)
T ss_dssp             ---CCEEEEEEEEETTCCE--------ECTTTTTTCSEEEEEEEECSCSTT-HHHHHH----HHTTTEEEEEEESCBCTT
T ss_pred             ---CCCCCEEECCCCCcCc--------cCHHHHhccccCCeecCCCCcccc-chhhhh----hhcccccEEECCCCcccc
Confidence               6889999999998877        345667788999999999999866 444332    336899999999999886


Q ss_pred             cccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCC
Q 013056          321 WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERC  400 (450)
Q Consensus       321 ~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~  400 (450)
                      ..+        ..+........++.++|+++.+++.++..+|..+..+++|++|+|++|+++.      +|.  ..+..+
T Consensus       237 ~~~--------~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~------i~~--~~~~~l  300 (353)
T 2z80_A          237 FHF--------SELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS------VPD--GIFDRL  300 (353)
T ss_dssp             CCC--------C------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC------CCT--TTTTTC
T ss_pred             ccc--------cccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc------cCH--HHHhcC
Confidence            433        2233334567899999999999999999999999999999999999999986      552  346888


Q ss_pred             CCcCEEEccCCCCChhH--HHHHHHHHhc
Q 013056          401 NPLVELYLENCELSGRG--VSQLLDTLST  427 (450)
Q Consensus       401 ~~L~~L~L~~n~l~~~g--~~~l~~~l~~  427 (450)
                      ++|++|++++|.++...  ...+...+..
T Consensus       301 ~~L~~L~L~~N~~~~~~~~l~~l~~~~~~  329 (353)
T 2z80_A          301 TSLQKIWLHTNPWDCSCPRIDYLSRWLNK  329 (353)
T ss_dssp             TTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEeeCCCccCcCCCcHHHHHHHHh
Confidence            99999999999988753  3445556655

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.77  E-value=2.1e-20  Score=195.12  Aligned_cols=226  Identities=18%  Similarity=0.093  Sum_probs=170.3

Q ss_pred             chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhH--HHHHHHHHhcc
Q 013056          163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSF--VEGICRSLCSK  240 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~--~~~l~~~L~~~  240 (450)
                      .++.+++.+|....++ .+ .+++|++|++++|.......      +..+++|+.|++++|.++...  +..+..     
T Consensus       308 ~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~~------~~~l~~L~~L~ls~n~l~~~~~~~~~~~~-----  374 (606)
T 3vq2_A          308 KWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISFK------KVALPSLSYLDLSRNALSFSGCCSYSDLG-----  374 (606)
T ss_dssp             CCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEECC------CCCCTTCCEEECCSSCEEEEEECCHHHHC-----
T ss_pred             cCCEEEcccccCcccc-cC-CCCccceeeccCCcCccchh------hccCCCCCEEECcCCccCCCcchhhhhcc-----
Confidence            4566777777776555 44 77888888888885322221      457788999999999887542  333332     


Q ss_pred             ccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCC
Q 013056          241 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  320 (450)
Q Consensus       241 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~  320 (450)
                         +++|++|++++|.++.         ++..+..+++|++|++++|.+.+..+...    +..+++|++|++++|.+.+
T Consensus       375 ---~~~L~~L~L~~n~l~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~l~~n~l~~  438 (606)
T 3vq2_A          375 ---TNSLRHLDLSFNGAII---------MSANFMGLEELQHLDFQHSTLKRVTEFSA----FLSLEKLLYLDISYTNTKI  438 (606)
T ss_dssp             ---CSCCCEEECCSCSEEE---------ECCCCTTCTTCCEEECTTSEEESTTTTTT----TTTCTTCCEEECTTSCCEE
T ss_pred             ---CCcccEeECCCCcccc---------chhhccCCCCCCeeECCCCccCCccChhh----hhccccCCEEECcCCCCCc
Confidence               6889999999998766         23556778999999999998877544111    2457899999999999886


Q ss_pred             cccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCC
Q 013056          321 WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERC  400 (450)
Q Consensus       321 ~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~  400 (450)
                      ..+        ..   +..+++|++|++++|.+++..   +|..+..+++|++|+|++|.+++.     .|   ..+..+
T Consensus       439 ~~~--------~~---~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~-----~~---~~~~~l  496 (606)
T 3vq2_A          439 DFD--------GI---FLGLTSLNTLKMAGNSFKDNT---LSNVFANTTNLTFLDLSKCQLEQI-----SW---GVFDTL  496 (606)
T ss_dssp             CCT--------TT---TTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEE-----CT---TTTTTC
T ss_pred             cch--------hh---hcCCCCCCEEECCCCcCCCcc---hHHhhccCCCCCEEECCCCcCCcc-----Ch---hhhccc
Confidence            544        33   346789999999999988621   466788999999999999999873     33   567888


Q ss_pred             CCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056          401 NPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  444 (450)
Q Consensus       401 ~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~  444 (450)
                      ++|++|++++|+++..    .+..+..+. +|++|++++|+|+.
T Consensus       497 ~~L~~L~Ls~N~l~~~----~~~~~~~l~-~L~~L~l~~N~l~~  535 (606)
T 3vq2_A          497 HRLQLLNMSHNNLLFL----DSSHYNQLY-SLSTLDCSFNRIET  535 (606)
T ss_dssp             TTCCEEECCSSCCSCE----EGGGTTTCT-TCCEEECTTSCCCC
T ss_pred             ccCCEEECCCCcCCCc----CHHHccCCC-cCCEEECCCCcCcc
Confidence            9999999999999985    466677754 49999999999984

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.77  E-value=2.8e-19  Score=183.14  Aligned_cols=229  Identities=18%  Similarity=0.191  Sum_probs=165.1

Q ss_pred             chhhcccccCcch-hhhHhh-----hcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHH
Q 013056          163 YARCLRLQNALCV-EETCQL-----LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRS  236 (450)
Q Consensus       163 ~l~~l~L~~~~~~-~~~~~l-----~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~  236 (450)
                      .++.++++++.+. .++..+     .++++|+.+++++|.+ .........++.+ .+|+.|++++|.+.....      
T Consensus       248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~-~~L~~L~l~~n~l~~~~~------  319 (520)
T 2z7x_B          248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSN-MNIKNFTVSGTRMVHMLC------  319 (520)
T ss_dssp             SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHT-CCCSEEEEESSCCCCCCC------
T ss_pred             cccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhccccc-CceeEEEcCCCccccccc------
Confidence            4556667776665 455555     5677888888888775 1111222222222 578888888888764321      


Q ss_pred             HhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCCh--hHHHHHHHHHhhCCCCCcEEecc
Q 013056          237 LCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR--DFGRMVFSSLLEASSSLSILDLS  314 (450)
Q Consensus       237 L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~--~~~~~l~~~L~~~~~~L~~L~Ls  314 (450)
                          ...+++|++|++++|.+++        ..+..+..+++|++|++++|++++  ..+..+     ..+++|++|+++
T Consensus       320 ----~~~l~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~-----~~l~~L~~L~Ls  382 (520)
T 2z7x_B          320 ----PSKISPFLHLDFSNNLLTD--------TVFENCGHLTELETLILQMNQLKELSKIAEMT-----TQMKSLQQLDIS  382 (520)
T ss_dssp             ----CSSCCCCCEEECCSSCCCT--------TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH-----TTCTTCCEEECC
T ss_pred             ----hhhCCcccEEEeECCccCh--------hhhhhhccCCCCCEEEccCCccCccccchHHH-----hhCCCCCEEECC
Confidence                0126899999999999988        556677889999999999999986  223323     558999999999


Q ss_pred             CCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHH
Q 013056          315 GNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFV  394 (450)
Q Consensus       315 ~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~  394 (450)
                      +|.+.+..+        .  ..+..+++|+.|++++|.++..    ++..+.  ++|+.|++++|+|+.      +|   
T Consensus       383 ~N~l~~~l~--------~--~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~--~~L~~L~Ls~N~l~~------ip---  437 (520)
T 2z7x_B          383 QNSVSYDEK--------K--GDCSWTKSLLSLNMSSNILTDT----IFRCLP--PRIKVLDLHSNKIKS------IP---  437 (520)
T ss_dssp             SSCCBCCGG--------G--CSCCCCTTCCEEECCSSCCCGG----GGGSCC--TTCCEEECCSSCCCC------CC---
T ss_pred             CCcCCcccc--------c--chhccCccCCEEECcCCCCCcc----hhhhhc--ccCCEEECCCCcccc------cc---
Confidence            999986433        2  2344678999999999999863    443332  789999999999986      55   


Q ss_pred             hhcCCCCCcCEEEccCCCCChhHHHHHHHH-HhcCCCCCcEEECcCCCCCcccc
Q 013056          395 QASERCNPLVELYLENCELSGRGVSQLLDT-LSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       395 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~-l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                      ..+..+++|++|++++|+|+.     ++.. +..+ .+|++|++++|++....+
T Consensus       438 ~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~~l-~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          438 KQVVKLEALQELNVASNQLKS-----VPDGIFDRL-TSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             GGGGGCTTCCEEECCSSCCCC-----CCTTTTTTC-TTCCEEECCSSCBCCCHH
T ss_pred             hhhhcCCCCCEEECCCCcCCc-----cCHHHhccC-CcccEEECcCCCCcccCC
Confidence            445578999999999999987     4443 5564 449999999999987643

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.77  E-value=1.2e-19  Score=194.83  Aligned_cols=183  Identities=16%  Similarity=0.129  Sum_probs=105.8

Q ss_pred             chhhcccccCcchh------------------hhHhhh--cCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccC
Q 013056          163 YARCLRLQNALCVE------------------ETCQLL--RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLH  222 (450)
Q Consensus       163 ~l~~l~L~~~~~~~------------------~~~~l~--~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~  222 (450)
                      .++.|++++|.+..                  +|..+.  ++++|+.|+|++|.+...++..    +.++++|+.|+|++
T Consensus       449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~----l~~L~~L~~L~Ls~  524 (876)
T 4ecn_A          449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF----LYDLPELQSLNIAC  524 (876)
T ss_dssp             TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG----GGGCSSCCEEECTT
T ss_pred             CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH----HhCCCCCCEEECcC
Confidence            45666666666665                  666655  7777888888777644333322    56777788888887


Q ss_pred             CC-CCh-hHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHH--hhcCCCCCCEEecCCCCCChhHHHHHH
Q 013056          223 CK-LSP-SFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVS--FLSSGRSLCSLKLRHCHLDRDFGRMVF  298 (450)
Q Consensus       223 n~-l~~-~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~--~l~~~~~L~~L~Ls~n~l~~~~~~~l~  298 (450)
                      |+ ++. ..+..+... ......+++|++|++++|.++.         ++.  .++.+++|++|+|++|.++ ..+ .  
T Consensus       525 N~~lsg~~iP~~i~~L-~~~~~~l~~L~~L~Ls~N~L~~---------ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~--  590 (876)
T 4ecn_A          525 NRGISAAQLKADWTRL-ADDEDTGPKIQIFYMGYNNLEE---------FPASASLQKMVKLGLLDCVHNKVR-HLE-A--  590 (876)
T ss_dssp             CTTSCHHHHHHHHHHH-HHCTTTTTTCCEEECCSSCCCB---------CCCHHHHTTCTTCCEEECTTSCCC-BCC-C--
T ss_pred             CCCcccccchHHHHhh-hhcccccCCccEEEeeCCcCCc---------cCChhhhhcCCCCCEEECCCCCcc-cch-h--
Confidence            76 776 555555431 1011114577777777777764         223  5566777777777777776 333 2  


Q ss_pred             HHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCc-eeEEEccCCCCChhhHHHHHHHhhcCC--CCCEEe
Q 013056          299 SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS-LRLLNLRGNNLCKADARDLGSALVHIP--NLEILD  375 (450)
Q Consensus       299 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~~l~~~~--~L~~L~  375 (450)
                         +..+++|++|+|++|.+.. +|        ..+.   .+++ |+.|+|++|.++.     +|..+...+  +|+.|+
T Consensus       591 ---~~~L~~L~~L~Ls~N~l~~-lp--------~~l~---~l~~~L~~L~Ls~N~L~~-----lp~~~~~~~~~~L~~L~  650 (876)
T 4ecn_A          591 ---FGTNVKLTDLKLDYNQIEE-IP--------EDFC---AFTDQVEGLGFSHNKLKY-----IPNIFNAKSVYVMGSVD  650 (876)
T ss_dssp             ---CCTTSEESEEECCSSCCSC-CC--------TTSC---EECTTCCEEECCSSCCCS-----CCSCCCTTCSSCEEEEE
T ss_pred             ---hcCCCcceEEECcCCcccc-ch--------HHHh---hccccCCEEECcCCCCCc-----CchhhhccccCCCCEEE
Confidence               2445677777777777662 22        2222   3344 6666666665553     444443332  255555


Q ss_pred             cCCCCCCh
Q 013056          376 ISDNTIED  383 (450)
Q Consensus       376 Ls~N~l~~  383 (450)
                      |++|+++.
T Consensus       651 Ls~N~l~g  658 (876)
T 4ecn_A          651 FSYNKIGS  658 (876)
T ss_dssp             CCSSCTTT
T ss_pred             CcCCcCCC
Confidence            55555543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.77  E-value=5.7e-19  Score=180.86  Aligned_cols=140  Identities=18%  Similarity=0.191  Sum_probs=85.3

Q ss_pred             chhhcccccCcchhhhHhhhcCCCccEEEeecccChHH-HHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056          163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEH-VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  241 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~-~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~  241 (450)
                      .++.+++++|.+..++..  .+++|++|++++|.+... .+..    +.++++|++|++++|.|+......         
T Consensus        70 ~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~----~~~l~~L~~L~L~~n~l~~~~~~~---------  134 (520)
T 2z7x_B           70 ELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKE----FGNMSQLKFLGLSTTHLEKSSVLP---------  134 (520)
T ss_dssp             TCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGG----GGGCTTCCEEEEEESSCCGGGGGG---------
T ss_pred             CCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhh----hccCCcceEEEecCcccchhhccc---------
Confidence            456677777777665555  677777777777775431 1111    456777778888777777522111         


Q ss_pred             cCCCCe--eEEEcCCCCC--CCCCc-------------------------------------------------hhhHHH
Q 013056          242 KRIHKI--ENLSIDISSF--IENCP-------------------------------------------------SSVVVE  268 (450)
Q Consensus       242 ~~~~~L--~~L~L~~n~i--~~~~~-------------------------------------------------~~~~~~  268 (450)
                        +.+|  ++|++++|.+  +....                                                 ..+...
T Consensus       135 --l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  212 (520)
T 2z7x_B          135 --IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI  212 (520)
T ss_dssp             --GTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHH
T ss_pred             --cccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecc
Confidence              3444  7777776665  21110                                                 012223


Q ss_pred             HHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056          269 LVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  322 (450)
Q Consensus       269 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  322 (450)
                      + ..++.+++|++|++++|.+++..+..+.....  .++|++|++++|.+++..
T Consensus       213 ~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~  263 (520)
T 2z7x_B          213 L-AKLQTNPKLSNLTLNNIETTWNSFIRILQLVW--HTTVWYFSISNVKLQGQL  263 (520)
T ss_dssp             H-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHH--TSSCSEEEEEEEEEESCC
T ss_pred             h-hhhccccchhhccccccccCHHHHHHHHHHhh--hCcccEEEeecccccCcc
Confidence            3 36777888888888888887776666655432  357777777777766433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.77  E-value=1.3e-19  Score=191.68  Aligned_cols=242  Identities=17%  Similarity=0.142  Sum_probs=173.2

Q ss_pred             chhhcccccCcchhhhH-hhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056          163 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  241 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~  241 (450)
                      .++.+++++|.+..+.. .+..+++|+.|++++|.+...+..   ..+.++++|+.|++++|.++......+..      
T Consensus       382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------  452 (680)
T 1ziw_A          382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG---QEWRGLENIFEIYLSYNKYLQLTRNSFAL------  452 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS---GGGTTCTTCCEEECCSCSEEECCTTTTTT------
T ss_pred             cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc---ccccCcccccEEecCCCCcceeChhhhhc------
Confidence            45566777777766543 445778888888888886432210   11567788889999888876544333332      


Q ss_pred             cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCc
Q 013056          242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW  321 (450)
Q Consensus       242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~  321 (450)
                        +++|+.|++++|.+...+      ..+..+..+++|++|++++|.+++..+..+     ..+++|++|++++|.+++.
T Consensus       453 --~~~L~~L~l~~n~l~~~~------~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~-----~~l~~L~~L~Ls~N~l~~~  519 (680)
T 1ziw_A          453 --VPSLQRLMLRRVALKNVD------SSPSPFQPLRNLTILDLSNNNIANINDDML-----EGLEKLEILDLQHNNLARL  519 (680)
T ss_dssp             --CTTCCEEECTTSCCBCTT------CSSCTTTTCTTCCEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSSCCGGG
T ss_pred             --Ccccccchhccccccccc------cCCcccccCCCCCEEECCCCCCCcCChhhh-----ccccccCEEeCCCCCcccc
Confidence              688999999998876432      245567789999999999999987444333     4579999999999998752


Q ss_pred             ccccCcccHHH-hhhCCCCCCceeEEEccCCCCChhhHHHHHH-HhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCC
Q 013056          322 LSKYDRSGPLF-SLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASER  399 (450)
Q Consensus       322 ~~~~~~~~l~~-~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~  399 (450)
                      .+    ..+|. ....+..+++|+.|+|++|+++.     +|. .+..+++|+.|+|++|+++.      +|.  ..+..
T Consensus       520 ~~----~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-----i~~~~~~~l~~L~~L~Ls~N~l~~------l~~--~~~~~  582 (680)
T 1ziw_A          520 WK----HANPGGPIYFLKGLSHLHILNLESNGFDE-----IPVEVFKDLFELKIIDLGLNNLNT------LPA--SVFNN  582 (680)
T ss_dssp             GS----TTSTTSCCCTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCC------CCT--TTTTT
T ss_pred             ch----hhccCCcchhhcCCCCCCEEECCCCCCCC-----CCHHHcccccCcceeECCCCCCCc------CCH--hHhCC
Confidence            11    00111 11124578999999999999996     554 57899999999999999987      442  55788


Q ss_pred             CCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056          400 CNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       400 ~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                      +++|+.|+|++|.|+......+...+..    |+.|++++|++....+
T Consensus       583 l~~L~~L~L~~N~l~~~~~~~~~~~~~~----L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          583 QVSLKSLNLQKNLITSVEKKVFGPAFRN----LTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CTTCCEEECTTSCCCBCCHHHHHHHHTT----CSEEECTTCCCCBCCC
T ss_pred             CCCCCEEECCCCcCCccChhHhcccccc----cCEEEccCCCcccCCc
Confidence            8999999999999998643333223333    9999999999987643

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.76  E-value=5e-19  Score=168.99  Aligned_cols=191  Identities=20%  Similarity=0.239  Sum_probs=91.1

Q ss_pred             CCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchh
Q 013056          185 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS  264 (450)
Q Consensus       185 ~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~  264 (450)
                      ++|++|++++|.+.... .     +..+++|+.|++++|.+++...  +..        +++|++|++++|.+++.    
T Consensus        41 ~~L~~L~l~~~~i~~l~-~-----~~~l~~L~~L~L~~n~i~~~~~--~~~--------l~~L~~L~L~~n~l~~~----  100 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTIE-G-----VQYLNNLIGLELKDNQITDLAP--LKN--------LTKITELELSGNPLKNV----  100 (308)
T ss_dssp             HTCCEEECTTSCCCCCT-T-----GGGCTTCCEEECCSSCCCCCGG--GTT--------CCSCCEEECCSCCCSCC----
T ss_pred             CCcCEEEeeCCCccCch-h-----hhccCCCCEEEccCCcCCCChh--Hcc--------CCCCCEEEccCCcCCCc----
Confidence            45555555555533311 1     3345555555555555554322  111        45555555555555441    


Q ss_pred             hHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCcee
Q 013056          265 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR  344 (450)
Q Consensus       265 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~  344 (450)
                            ..+..+++|++|++++|.+++..+       +..+++|++|++++|.+++.         +. +.   .+++|+
T Consensus       101 ------~~~~~l~~L~~L~l~~n~l~~~~~-------l~~l~~L~~L~l~~n~l~~~---------~~-l~---~l~~L~  154 (308)
T 1h6u_A          101 ------SAIAGLQSIKTLDLTSTQITDVTP-------LAGLSNLQVLYLDLNQITNI---------SP-LA---GLTNLQ  154 (308)
T ss_dssp             ------GGGTTCTTCCEEECTTSCCCCCGG-------GTTCTTCCEEECCSSCCCCC---------GG-GG---GCTTCC
T ss_pred             ------hhhcCCCCCCEEECCCCCCCCchh-------hcCCCCCCEEECCCCccCcC---------cc-cc---CCCCcc
Confidence                  124455555555555555544211       23345555555555555531         11 22   335555


Q ss_pred             EEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHH
Q 013056          345 LLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDT  424 (450)
Q Consensus       345 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~  424 (450)
                      .|++++|.+++     ++. +..+++|++|++++|.+++      ++    .+..+++|++|++++|++++..      .
T Consensus       155 ~L~l~~n~l~~-----~~~-l~~l~~L~~L~l~~n~l~~------~~----~l~~l~~L~~L~L~~N~l~~~~------~  212 (308)
T 1h6u_A          155 YLSIGNAQVSD-----LTP-LANLSKLTTLKADDNKISD------IS----PLASLPNLIEVHLKNNQISDVS------P  212 (308)
T ss_dssp             EEECCSSCCCC-----CGG-GTTCTTCCEEECCSSCCCC------CG----GGGGCTTCCEEECTTSCCCBCG------G
T ss_pred             EEEccCCcCCC-----Chh-hcCCCCCCEEECCCCccCc------Ch----hhcCCCCCCEEEccCCccCccc------c
Confidence            55555555554     222 4555555555555555554      21    1344455555555555555431      1


Q ss_pred             HhcCCCCCcEEECcCCCCCc
Q 013056          425 LSTLRRPPTSLSIADNNLGR  444 (450)
Q Consensus       425 l~~l~~~L~~L~L~~N~l~~  444 (450)
                      +..+ .+|++|++++|++++
T Consensus       213 l~~l-~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          213 LANT-SNLFIVTLTNQTITN  231 (308)
T ss_dssp             GTTC-TTCCEEEEEEEEEEC
T ss_pred             ccCC-CCCCEEEccCCeeec
Confidence            3332 235555555555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.76  E-value=1.1e-19  Score=172.10  Aligned_cols=209  Identities=17%  Similarity=0.102  Sum_probs=123.9

Q ss_pred             hhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccC
Q 013056          164 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR  243 (450)
Q Consensus       164 l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~  243 (450)
                      ++.++++++.+..++..+.  ++++.|++++|.+.......    +.++++|+.|+|++|.|+.....          ..
T Consensus        12 l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~----------~~   75 (290)
T 1p9a_G           12 HLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLAT----LMPYTRLTQLNLDRAELTKLQVD----------GT   75 (290)
T ss_dssp             CCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGG----GTTCTTCCEEECTTSCCCEEECC----------SC
T ss_pred             ccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHH----hhcCCCCCEEECCCCccCcccCC----------CC
Confidence            3445555565555554443  56777777777754432221    45667777777777777643211          11


Q ss_pred             CCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccc
Q 013056          244 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS  323 (450)
Q Consensus       244 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~  323 (450)
                      +++|++|++++|.++.         ++..+..+++|++|++++|+++...+..+     ..+++|++|+|++|.+++..+
T Consensus        76 l~~L~~L~Ls~N~l~~---------l~~~~~~l~~L~~L~l~~N~l~~l~~~~~-----~~l~~L~~L~L~~N~l~~~~~  141 (290)
T 1p9a_G           76 LPVLGTLDLSHNQLQS---------LPLLGQTLPALTVLDVSFNRLTSLPLGAL-----RGLGELQELYLKGNELKTLPP  141 (290)
T ss_dssp             CTTCCEEECCSSCCSS---------CCCCTTTCTTCCEEECCSSCCCCCCSSTT-----TTCTTCCEEECTTSCCCCCCT
T ss_pred             CCcCCEEECCCCcCCc---------CchhhccCCCCCEEECCCCcCcccCHHHH-----cCCCCCCEEECCCCCCCccCh
Confidence            5677777777777765         23345566777777777777765332222     346677777777777765322


Q ss_pred             ccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHH-HhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCC
Q 013056          324 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP  402 (450)
Q Consensus       324 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~  402 (450)
                                 ..+..+++|+.|+|++|+|+.     ++. .+..+++|++|+|++|+|+.      +|   ..+..+.+
T Consensus       142 -----------~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~~l~~L~~L~L~~N~l~~------ip---~~~~~~~~  196 (290)
T 1p9a_G          142 -----------GLLTPTPKLEKLSLANNNLTE-----LPAGLLNGLENLDTLLLQENSLYT------IP---KGFFGSHL  196 (290)
T ss_dssp             -----------TTTTTCTTCCEEECTTSCCSC-----CCTTTTTTCTTCCEEECCSSCCCC------CC---TTTTTTCC
T ss_pred             -----------hhcccccCCCEEECCCCcCCc-----cCHHHhcCcCCCCEEECCCCcCCc------cC---hhhccccc
Confidence                       223355677777777777765     443 34567777777777777765      44   34455567


Q ss_pred             cCEEEccCCCCCh-hHHHHHHHHHhc
Q 013056          403 LVELYLENCELSG-RGVSQLLDTLST  427 (450)
Q Consensus       403 L~~L~L~~n~l~~-~g~~~l~~~l~~  427 (450)
                      |+.|+|++|.+.. -+...+...+..
T Consensus       197 L~~l~L~~Np~~C~c~~~~l~~wl~~  222 (290)
T 1p9a_G          197 LPFAFLHGNPWLCNCEILYFRRWLQD  222 (290)
T ss_dssp             CSEEECCSCCBCCSGGGHHHHHHHHH
T ss_pred             CCeEEeCCCCccCcCccHHHHHHHHh
Confidence            7777777777653 222334445544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.76  E-value=1.1e-19  Score=184.54  Aligned_cols=215  Identities=19%  Similarity=0.138  Sum_probs=166.8

Q ss_pred             chhhcccccCcchhhhH-hhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056          163 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  241 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~  241 (450)
                      .++.++++++.+..++. .+..+++|+.|+|++|.+....+      +..+++|+.|+|++|.|++..         .  
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l~---------~--   97 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQELL---------V--   97 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE------CTTCTTCCEEECCSSEEEEEE---------E--
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc------cccCCCCCEEEecCCcCCCCC---------C--
Confidence            56778888888877654 56688999999999998665433      568899999999999887422         1  


Q ss_pred             cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCc
Q 013056          242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW  321 (450)
Q Consensus       242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~  321 (450)
                        .++|++|++++|.++....           ..+++|++|+|++|.+++..+..+     ..+++|++|+|++|.+++.
T Consensus        98 --~~~L~~L~L~~N~l~~~~~-----------~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~  159 (487)
T 3oja_A           98 --GPSIETLHAANNNISRVSC-----------SRGQGKKNIYLANNKITMLRDLDE-----GCRSRVQYLDLKLNEIDTV  159 (487)
T ss_dssp             --CTTCCEEECCSSCCCCEEE-----------CCCSSCEEEECCSSCCCSGGGBCG-----GGGSSEEEEECTTSCCCEE
T ss_pred             --CCCcCEEECcCCcCCCCCc-----------cccCCCCEEECCCCCCCCCCchhh-----cCCCCCCEEECCCCCCCCc
Confidence              4789999999999987322           246889999999999988655443     3468999999999999875


Q ss_pred             ccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCC
Q 013056          322 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN  401 (450)
Q Consensus       322 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~  401 (450)
                      .+        ..+.  ..+++|+.|+|++|.|+.     ++ ....+++|+.|+|++|.|++      +|   ..+..++
T Consensus       160 ~~--------~~l~--~~l~~L~~L~Ls~N~l~~-----~~-~~~~l~~L~~L~Ls~N~l~~------~~---~~~~~l~  214 (487)
T 3oja_A          160 NF--------AELA--ASSDTLEHLNLQYNFIYD-----VK-GQVVFAKLKTLDLSSNKLAF------MG---PEFQSAA  214 (487)
T ss_dssp             EG--------GGGG--GGTTTCCEEECTTSCCCE-----EE-CCCCCTTCCEEECCSSCCCE------EC---GGGGGGT
T ss_pred             Ch--------HHHh--hhCCcccEEecCCCcccc-----cc-ccccCCCCCEEECCCCCCCC------CC---HhHcCCC
Confidence            44        3332  145889999999999987     32 24468999999999999987      43   3466779


Q ss_pred             CcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCC
Q 013056          402 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG  443 (450)
Q Consensus       402 ~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~  443 (450)
                      +|+.|+|++|.|+.     ++..+..+ .+|+.|++++|++.
T Consensus       215 ~L~~L~Ls~N~l~~-----lp~~l~~l-~~L~~L~l~~N~l~  250 (487)
T 3oja_A          215 GVTWISLRNNKLVL-----IEKALRFS-QNLEHFDLRGNGFH  250 (487)
T ss_dssp             TCSEEECTTSCCCE-----ECTTCCCC-TTCCEEECTTCCBC
T ss_pred             CccEEEecCCcCcc-----cchhhccC-CCCCEEEcCCCCCc
Confidence            99999999999997     56666664 45999999999998

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.76  E-value=5.3e-20  Score=186.84  Aligned_cols=212  Identities=17%  Similarity=0.093  Sum_probs=168.4

Q ss_pred             chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056          163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  242 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~  242 (450)
                      .++.|++++|.+...+. +..+++|++|+|++|.+...         ...++|+.|++++|.|+.....           
T Consensus        59 ~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l---------~~~~~L~~L~L~~N~l~~~~~~-----------  117 (487)
T 3oja_A           59 KLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL---------LVGPSIETLHAANNNISRVSCS-----------  117 (487)
T ss_dssp             TCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEE---------EECTTCCEEECCSSCCCCEEEC-----------
T ss_pred             CCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCC---------CCCCCcCEEECcCCcCCCCCcc-----------
Confidence            56778888888776554 67889999999999996542         2448999999999999864322           


Q ss_pred             CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056          243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  322 (450)
Q Consensus       243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  322 (450)
                      ..++|+.|++++|.+++        ..+..++.+++|++|+|++|.+++..+..+.    ..+++|++|+|++|.+++..
T Consensus       118 ~l~~L~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~----~~l~~L~~L~Ls~N~l~~~~  185 (487)
T 3oja_A          118 RGQGKKNIYLANNKITM--------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELA----ASSDTLEHLNLQYNFIYDVK  185 (487)
T ss_dssp             CCSSCEEEECCSSCCCS--------GGGBCGGGGSSEEEEECTTSCCCEEEGGGGG----GGTTTCCEEECTTSCCCEEE
T ss_pred             ccCCCCEEECCCCCCCC--------CCchhhcCCCCCCEEECCCCCCCCcChHHHh----hhCCcccEEecCCCcccccc
Confidence            15789999999999998        4555677899999999999999986665542    24799999999999998631


Q ss_pred             cccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCC
Q 013056          323 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP  402 (450)
Q Consensus       323 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~  402 (450)
                                   ....+++|+.|+|++|.|+.     +|+.+..+++|+.|+|++|.|+.      +|   ..+..+++
T Consensus       186 -------------~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~l~~L~~L~Ls~N~l~~------lp---~~l~~l~~  238 (487)
T 3oja_A          186 -------------GQVVFAKLKTLDLSSNKLAF-----MGPEFQSAAGVTWISLRNNKLVL------IE---KALRFSQN  238 (487)
T ss_dssp             -------------CCCCCTTCCEEECCSSCCCE-----ECGGGGGGTTCSEEECTTSCCCE------EC---TTCCCCTT
T ss_pred             -------------ccccCCCCCEEECCCCCCCC-----CCHhHcCCCCccEEEecCCcCcc------cc---hhhccCCC
Confidence                         22246899999999999997     67778999999999999999997      55   56788899


Q ss_pred             cCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECc
Q 013056          403 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIA  438 (450)
Q Consensus       403 L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~  438 (450)
                      |+.|++++|.++...   ++..+..+ ..|+.++++
T Consensus       239 L~~L~l~~N~l~c~~---~~~~~~~l-~~L~~l~~~  270 (487)
T 3oja_A          239 LEHFDLRGNGFHCGT---LRDFFSKN-QRVQTVAKQ  270 (487)
T ss_dssp             CCEEECTTCCBCHHH---HHHHHTTC-HHHHHHHHH
T ss_pred             CCEEEcCCCCCcCcc---hHHHHHhC-CCCcEEecc
Confidence            999999999998432   44555553 236666664

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.76  E-value=2.1e-19  Score=168.26  Aligned_cols=202  Identities=17%  Similarity=0.166  Sum_probs=128.7

Q ss_pred             hhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccC
Q 013056          164 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR  243 (450)
Q Consensus       164 l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~  243 (450)
                      .+.++++++.+..+|..+.  +++++|++++|.+......    .+.++++|++|++++|.|+......+..        
T Consensus        18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~i~~~~~~~--------   83 (270)
T 2o6q_A           18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSK----AFHRLTKLRLLYLNDNKLQTLPAGIFKE--------   83 (270)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTT----SSSSCTTCCEEECCSSCCSCCCTTTTSS--------
T ss_pred             CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHH----HhcCCCCCCEEECCCCccCeeChhhhcC--------
Confidence            3455666666665554432  5678888888875543221    1456778888888888776432222111        


Q ss_pred             CCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccc
Q 013056          244 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS  323 (450)
Q Consensus       244 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~  323 (450)
                      +++|++|++++|.++..        ....+..+++|++|++++|.++...+..+     ..+++|++|+|++|.+++..+
T Consensus        84 l~~L~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~~  150 (270)
T 2o6q_A           84 LKNLETLWVTDNKLQAL--------PIGVFDQLVNLAELRLDRNQLKSLPPRVF-----DSLTKLTYLSLGYNELQSLPK  150 (270)
T ss_dssp             CTTCCEEECCSSCCCCC--------CTTTTTTCSSCCEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSSCCCCCCT
T ss_pred             CCCCCEEECCCCcCCcC--------CHhHcccccCCCEEECCCCccCeeCHHHh-----CcCcCCCEEECCCCcCCccCH
Confidence            57788888888877762        23345667788888888887766433322     446778888888887775332


Q ss_pred             ccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCc
Q 013056          324 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL  403 (450)
Q Consensus       324 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L  403 (450)
                                 ..+..+++|+.|+|++|.++..    .+..+..+++|++|+|++|.++.      +|.  ..+..+++|
T Consensus       151 -----------~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L  207 (270)
T 2o6q_A          151 -----------GVFDKLTSLKELRLYNNQLKRV----PEGAFDKLTELKTLKLDNNQLKR------VPE--GAFDSLEKL  207 (270)
T ss_dssp             -----------TTTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTC
T ss_pred             -----------hHccCCcccceeEecCCcCcEe----ChhHhccCCCcCEEECCCCcCCc------CCH--HHhccccCC
Confidence                       2233567788888888877751    22346677788888888887765      331  346667778


Q ss_pred             CEEEccCCCCCh
Q 013056          404 VELYLENCELSG  415 (450)
Q Consensus       404 ~~L~L~~n~l~~  415 (450)
                      +.|+|++|.+..
T Consensus       208 ~~L~l~~N~~~c  219 (270)
T 2o6q_A          208 KMLQLQENPWDC  219 (270)
T ss_dssp             CEEECCSSCBCC
T ss_pred             CEEEecCCCeeC
Confidence            888888887644

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.76  E-value=5.5e-18  Score=171.23  Aligned_cols=82  Identities=21%  Similarity=0.244  Sum_probs=40.8

Q ss_pred             CCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHH
Q 013056          340 LQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVS  419 (450)
Q Consensus       340 l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~  419 (450)
                      +++|+.|++++|.+++.     +. +..+++|+.|++++|.+++      +    ..+..+++|+.|++++|++++.   
T Consensus       308 l~~L~~L~L~~n~l~~~-----~~-~~~l~~L~~L~l~~n~l~~------~----~~l~~l~~L~~L~l~~n~l~~~---  368 (466)
T 1o6v_A          308 LKNLTYLTLYFNNISDI-----SP-VSSLTKLQRLFFYNNKVSD------V----SSLANLTNINWLSAGHNQISDL---  368 (466)
T ss_dssp             CTTCSEEECCSSCCSCC-----GG-GGGCTTCCEEECCSSCCCC------C----GGGTTCTTCCEEECCSSCCCBC---
T ss_pred             CCCCCEEECcCCcCCCc-----hh-hccCccCCEeECCCCccCC------c----hhhccCCCCCEEeCCCCccCcc---
Confidence            34555555555555541     11 4455555555555555554      2    2244555556666666655553   


Q ss_pred             HHHHHHhcCCCCCcEEECcCCCCCc
Q 013056          420 QLLDTLSTLRRPPTSLSIADNNLGR  444 (450)
Q Consensus       420 ~l~~~l~~l~~~L~~L~L~~N~l~~  444 (450)
                       .+  +..+. +|++|++++|++++
T Consensus       369 -~~--~~~l~-~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          369 -TP--LANLT-RITQLGLNDQAWTN  389 (466)
T ss_dssp             -GG--GTTCT-TCCEEECCCEEEEC
T ss_pred             -ch--hhcCC-CCCEEeccCCcccC
Confidence             11  33422 25666666655544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.76  E-value=3.2e-20  Score=179.13  Aligned_cols=229  Identities=19%  Similarity=0.135  Sum_probs=142.8

Q ss_pred             chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056          163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  242 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~  242 (450)
                      .++.++++++.+..++..+.  ++|++|++++|.+......    .+.++++|+.|++++|.++..+...  ..+    .
T Consensus       103 ~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~--~~~----~  170 (332)
T 2ft3_A          103 KLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKG----VFSGLRNMNCIEMGGNPLENSGFEP--GAF----D  170 (332)
T ss_dssp             TCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSG----GGSSCSSCCEEECCSCCCBGGGSCT--TSS----C
T ss_pred             CCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHh----HhCCCccCCEEECCCCccccCCCCc--ccc----c
Confidence            34455555555554444333  5566666666654332221    1345666666666666664311100  000    0


Q ss_pred             CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056          243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  322 (450)
Q Consensus       243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  322 (450)
                       ..+|++|++++|.++.....           -.++|++|++++|.+++..+..+     ..+++|++|++++|.+++..
T Consensus       171 -~l~L~~L~l~~n~l~~l~~~-----------~~~~L~~L~l~~n~i~~~~~~~l-----~~l~~L~~L~L~~N~l~~~~  233 (332)
T 2ft3_A          171 -GLKLNYLRISEAKLTGIPKD-----------LPETLNELHLDHNKIQAIELEDL-----LRYSKLYRLGLGHNQIRMIE  233 (332)
T ss_dssp             -SCCCSCCBCCSSBCSSCCSS-----------SCSSCSCCBCCSSCCCCCCTTSS-----TTCTTCSCCBCCSSCCCCCC
T ss_pred             -CCccCEEECcCCCCCccCcc-----------ccCCCCEEECCCCcCCccCHHHh-----cCCCCCCEEECCCCcCCcCC
Confidence             11566666666666552211           12689999999999987554433     45799999999999998754


Q ss_pred             cccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCC
Q 013056          323 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP  402 (450)
Q Consensus       323 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~  402 (450)
                      +        ..+.   .+++|+.|+|++|+++.     +|..+..+++|++|++++|+|++.+...+.+.  ........
T Consensus       234 ~--------~~~~---~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~--~~~~~~~~  295 (332)
T 2ft3_A          234 N--------GSLS---FLPTLRELHLDNNKLSR-----VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV--GFGVKRAY  295 (332)
T ss_dssp             T--------TGGG---GCTTCCEEECCSSCCCB-----CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCS--SCCSSSCC
T ss_pred             h--------hHhh---CCCCCCEEECCCCcCee-----cChhhhcCccCCEEECCCCCCCccChhHcccc--cccccccc
Confidence            4        3444   56899999999999995     88889999999999999999988433322210  00011467


Q ss_pred             cCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCC
Q 013056          403 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN  441 (450)
Q Consensus       403 L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~  441 (450)
                      |+.|++++|.++..++  .+..+..+ ++|+.+++++|.
T Consensus       296 l~~L~l~~N~~~~~~~--~~~~~~~l-~~L~~l~l~~n~  331 (332)
T 2ft3_A          296 YNGISLFNNPVPYWEV--QPATFRCV-TDRLAIQFGNYK  331 (332)
T ss_dssp             BSEEECCSSSSCGGGS--CGGGGTTB-CCSTTEEC----
T ss_pred             ccceEeecCccccccc--Cccccccc-chhhhhhccccc
Confidence            9999999999884322  23455553 449999999884

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.75  E-value=1.5e-17  Score=146.41  Aligned_cols=140  Identities=14%  Similarity=0.069  Sum_probs=84.6

Q ss_pred             HHHHHHhhcCCCCCCEEecCCC-CCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCcee
Q 013056          266 VVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR  344 (450)
Q Consensus       266 ~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~  344 (450)
                      .+.+...+..+++|++|+|++| .+++.+...++.++.. .++|++|+|++|.+++    .+...++..+.   ..++|+
T Consensus        25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~-~~~L~~L~Ls~n~i~~----~g~~~l~~~L~---~n~~L~   96 (185)
T 1io0_A           25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKT-NTYVKKFSIVGTRSND----PVAFALAEMLK---VNNTLK   96 (185)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTT-CCSCCEEECTTSCCCH----HHHHHHHHHHH---HCSSCC
T ss_pred             HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHh-CCCcCEEECcCCCCCh----HHHHHHHHHHH---hCCCcC
Confidence            3467777788888888888888 8888888888777644 3556666666665552    23333444444   224555


Q ss_pred             EEEccCCCCChhhHHHHHHHhhcCCCCCEEec--CCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhH
Q 013056          345 LLNLRGNNLCKADARDLGSALVHIPNLEILDI--SDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG  417 (450)
Q Consensus       345 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L--s~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g  417 (450)
                      +|+|++|.|+++|+..++.++..+++|++|+|  ++|.|+++|+..++.    .+..+++|++|+|++|.|++.|
T Consensus        97 ~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~----~L~~n~~L~~L~L~~n~i~~~~  167 (185)
T 1io0_A           97 SLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN----MLEKNTTLLKFGYHFTQQGPRL  167 (185)
T ss_dssp             EEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH----HHHHCSSCCEEECCCSSHHHHH
T ss_pred             EEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH----HHHhCCCcCEEeccCCCCChHH
Confidence            56666666666665555555555555666666  555666655555542    2334455666666666555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.75  E-value=1.8e-19  Score=168.66  Aligned_cols=204  Identities=18%  Similarity=0.158  Sum_probs=145.1

Q ss_pred             CCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchh
Q 013056          185 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS  264 (450)
Q Consensus       185 ~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~  264 (450)
                      ...+.++++++.+......       -.++++.|++++|.|+......+..        +++|++|++++|.++..    
T Consensus        16 ~~~~~l~~~~~~l~~ip~~-------~~~~l~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~i----   76 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSN-------IPADTKKLDLQSNKLSSLPSKAFHR--------LTKLRLLYLNDNKLQTL----   76 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSC-------CCTTCSEEECCSSCCSCCCTTSSSS--------CTTCCEEECCSSCCSCC----
T ss_pred             CCCCEEEccCCCCCccCCC-------CCCCCCEEECcCCCCCeeCHHHhcC--------CCCCCEEECCCCccCee----
Confidence            3567888888876543221       1257899999999887544333322        68899999999988772    


Q ss_pred             hHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCcee
Q 013056          265 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR  344 (450)
Q Consensus       265 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~  344 (450)
                          ....+..+++|++|++++|.++...+..     +..+++|++|++++|.+++..+           ..+..+++|+
T Consensus        77 ----~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~-----------~~~~~l~~L~  136 (270)
T 2o6q_A           77 ----PAGIFKELKNLETLWVTDNKLQALPIGV-----FDQLVNLAELRLDRNQLKSLPP-----------RVFDSLTKLT  136 (270)
T ss_dssp             ----CTTTTSSCTTCCEEECCSSCCCCCCTTT-----TTTCSSCCEEECCSSCCCCCCT-----------TTTTTCTTCC
T ss_pred             ----ChhhhcCCCCCCEEECCCCcCCcCCHhH-----cccccCCCEEECCCCccCeeCH-----------HHhCcCcCCC
Confidence                2334567889999999999887643322     2457889999999998886443           2234678899


Q ss_pred             EEEccCCCCChhhHHHHHH-HhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHH
Q 013056          345 LLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLD  423 (450)
Q Consensus       345 ~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~  423 (450)
                      +|+|++|.|+.     ++. .+..+++|++|+|++|.++.      ++.  ..+..+++|++|+|++|.|+..    ...
T Consensus       137 ~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~------~~~--~~~~~l~~L~~L~L~~N~l~~~----~~~  199 (270)
T 2o6q_A          137 YLSLGYNELQS-----LPKGVFDKLTSLKELRLYNNQLKR------VPE--GAFDKLTELKTLKLDNNQLKRV----PEG  199 (270)
T ss_dssp             EEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTCCEEECCSSCCSCC----CTT
T ss_pred             EEECCCCcCCc-----cCHhHccCCcccceeEecCCcCcE------eCh--hHhccCCCcCEEECCCCcCCcC----CHH
Confidence            99999998886     333 46788899999999998877      331  4567788999999999988874    222


Q ss_pred             HHhcCCCCCcEEECcCCCCCcc
Q 013056          424 TLSTLRRPPTSLSIADNNLGRF  445 (450)
Q Consensus       424 ~l~~l~~~L~~L~L~~N~l~~~  445 (450)
                      .+..+ .+|+.|++++|++...
T Consensus       200 ~~~~l-~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          200 AFDSL-EKLKMLQLQENPWDCT  220 (270)
T ss_dssp             TTTTC-TTCCEEECCSSCBCCS
T ss_pred             Hhccc-cCCCEEEecCCCeeCC
Confidence            34553 3489999999988654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.75  E-value=8.6e-20  Score=171.39  Aligned_cols=220  Identities=15%  Similarity=0.122  Sum_probs=165.5

Q ss_pred             cchhhcccccCcchhhhH-hhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcc
Q 013056          162 HYARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK  240 (450)
Q Consensus       162 ~~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~  240 (450)
                      ..++.++++++.+..++. .+.++++|++|++++|.+.......    +.++++|+.|++++|.++...+..+..     
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~-----   98 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSG-----   98 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTT-----
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHH----ccCCcCCCEEECCCCccCccChhhhcC-----
Confidence            356778888888887766 5668899999999999865543322    568899999999999998765444433     


Q ss_pred             ccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhH-HHHHHHHHhhCCCCCcEEeccCCCCC
Q 013056          241 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDF-GRMVFSSLLEASSSLSILDLSGNSIG  319 (450)
Q Consensus       241 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~-~~~l~~~L~~~~~~L~~L~Ls~n~l~  319 (450)
                         +.+|++|++++|.++...        ...+..+++|++|++++|.+++.. +..+     ..+++|++|++++|.++
T Consensus        99 ---l~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~n~l~~~~l~~~~-----~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A           99 ---LSSLQKLVAVETNLASLE--------NFPIGHLKTLKELNVAHNLIQSFKLPEYF-----SNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             ---CTTCCEEECTTSCCCCST--------TCCCTTCTTCCEEECCSSCCCCCCCCGGG-----GGCTTCCEEECCSSCCC
T ss_pred             ---CccccEEECCCCCccccC--------chhcccCCCCCEEECcCCccceecCchhh-----ccCCCCCEEECCCCCCC
Confidence               689999999999998732        224678899999999999997632 3333     45799999999999998


Q ss_pred             CcccccCcccHHHhhhCCCCCCcee-EEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcC
Q 013056          320 GWLSKYDRSGPLFSLGAGKSLQSLR-LLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASE  398 (450)
Q Consensus       320 ~~~~~~~~~~l~~~l~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~  398 (450)
                      +..+        ..+..+..++.|. .|++++|.++.     ++.......+|++|+|++|.++.      +|.  ..+.
T Consensus       163 ~~~~--------~~~~~l~~L~~l~l~L~ls~n~l~~-----~~~~~~~~~~L~~L~L~~n~l~~------~~~--~~~~  221 (276)
T 2z62_A          163 SIYC--------TDLRVLHQMPLLNLSLDLSLNPMNF-----IQPGAFKEIRLKELALDTNQLKS------VPD--GIFD  221 (276)
T ss_dssp             EECG--------GGGHHHHTCTTCCEEEECCSSCCCE-----ECTTSSCSCCEEEEECCSSCCSC------CCT--TTTT
T ss_pred             cCCH--------HHhhhhhhccccceeeecCCCcccc-----cCccccCCCcccEEECCCCceee------cCH--hHhc
Confidence            6433        3444333445555 89999999996     55555566699999999999987      432  4568


Q ss_pred             CCCCcCEEEccCCCCChhH--HHHHHHHHhc
Q 013056          399 RCNPLVELYLENCELSGRG--VSQLLDTLST  427 (450)
Q Consensus       399 ~~~~L~~L~L~~n~l~~~g--~~~l~~~l~~  427 (450)
                      .+++|++|++++|+++...  ...+...+..
T Consensus       222 ~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~~  252 (276)
T 2z62_A          222 RLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK  252 (276)
T ss_dssp             TCCSCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred             ccccccEEEccCCcccccCCchHHHHHHHHh
Confidence            8899999999999988643  2334455544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.75  E-value=7.4e-20  Score=189.44  Aligned_cols=229  Identities=19%  Similarity=0.158  Sum_probs=160.5

Q ss_pred             hhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhH--HHHHHHHHhccc
Q 013056          164 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSF--VEGICRSLCSKR  241 (450)
Q Consensus       164 l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~--~~~l~~~L~~~~  241 (450)
                      ++.+++.++.+..++.  ..+++|+.|++++|.......      ...+++|+.|++++|.++...  +..+..      
T Consensus       306 L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~------~~~~~~L~~L~l~~n~l~~~~~~~~~~~~------  371 (570)
T 2z63_A          306 WQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFS------EVDLPSLEFLDLSRNGLSFKGCCSQSDFG------  371 (570)
T ss_dssp             CSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCC------CCBCTTCCEEECCSSCCBEEEEEEHHHHT------
T ss_pred             ccEEeeccCcccccCc--ccccccCEEeCcCCccccccc------cccCCCCCEEeCcCCccCccccccccccc------
Confidence            3444455554443332  245666666666666333222      146778888888888877543  233332      


Q ss_pred             cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCc
Q 013056          242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW  321 (450)
Q Consensus       242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~  321 (450)
                        +++|++|++++|.++.         ++..+..+++|++|++++|.+.+..+...    +..+++|++|++++|.+.+.
T Consensus       372 --~~~L~~L~l~~n~l~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~l~~n~l~~~  436 (570)
T 2z63_A          372 --TTSLKYLDLSFNGVIT---------MSSNFLGLEQLEHLDFQHSNLKQMSEFSV----FLSLRNLIYLDISHTHTRVA  436 (570)
T ss_dssp             --CSCCCEEECCSCSEEE---------EEEEEETCTTCCEEECTTSEEESCTTSCT----TTTCTTCCEEECTTSCCEEC
T ss_pred             --cCccCEEECCCCcccc---------ccccccccCCCCEEEccCCccccccchhh----hhcCCCCCEEeCcCCccccc
Confidence              6788888888888766         22236778899999999888766433111    24578899999999988764


Q ss_pred             ccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCC
Q 013056          322 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN  401 (450)
Q Consensus       322 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~  401 (450)
                      .+        .   .+..+++|+.|++++|.+++.   .+|..+..+++|++|+|++|++++.     .|   ..+..++
T Consensus       437 ~~--------~---~~~~l~~L~~L~l~~n~l~~~---~~p~~~~~l~~L~~L~l~~n~l~~~-----~~---~~~~~l~  494 (570)
T 2z63_A          437 FN--------G---IFNGLSSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQL-----SP---TAFNSLS  494 (570)
T ss_dssp             CT--------T---TTTTCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEE-----CT---TTTTTCT
T ss_pred             ch--------h---hhhcCCcCcEEECcCCcCccc---cchhhhhcccCCCEEECCCCccccC-----Ch---hhhhccc
Confidence            44        3   334678999999999998732   2677788999999999999999873     24   5678889


Q ss_pred             CcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCccccc
Q 013056          402 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCAN  448 (450)
Q Consensus       402 ~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~~  448 (450)
                      +|++|++++|.++..    .+..+..+ .+|++|++++|++++..|.
T Consensus       495 ~L~~L~l~~n~l~~~----~~~~~~~l-~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          495 SLQVLNMASNQLKSV----PDGIFDRL-TSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TCCEEECCSSCCSCC----CTTTTTTC-TTCCEEECCSSCBCCCTTT
T ss_pred             CCCEEeCCCCcCCCC----CHHHhhcc-cCCcEEEecCCcccCCCcc
Confidence            999999999999885    33455664 4499999999999987663

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.75  E-value=4.5e-19  Score=183.45  Aligned_cols=127  Identities=17%  Similarity=0.062  Sum_probs=97.7

Q ss_pred             cchhhcccccCcchhhhH-hhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcc
Q 013056          162 HYARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK  240 (450)
Q Consensus       162 ~~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~  240 (450)
                      ..++.+++++|.+..++. .+.++++|++|++++|.+....+..    +.++++|++|++++|.|+.....         
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~lp~~---------  118 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV----FLFNQDLEYLDVSHNRLQNISCC---------  118 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTT----TTTCTTCCEEECTTSCCCEECSC---------
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHH----hCCCCCCCEEECCCCcCCccCcc---------
Confidence            467888999999888774 5668999999999999976543332    57889999999999999842211         


Q ss_pred             ccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCC--cEEeccCCCC
Q 013056          241 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSL--SILDLSGNSI  318 (450)
Q Consensus       241 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L--~~L~Ls~n~l  318 (450)
                        .+.+|++|++++|.++...       .+..++++++|++|++++|.++......        +++|  ++|++++|.+
T Consensus       119 --~l~~L~~L~Ls~N~l~~l~-------~p~~~~~l~~L~~L~L~~n~l~~~~~~~--------l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          119 --PMASLRHLDLSFNDFDVLP-------VCKEFGNLTKLTFLGLSAAKFRQLDLLP--------VAHLHLSCILLDLVSY  181 (562)
T ss_dssp             --CCTTCSEEECCSSCCSBCC-------CCGGGGGCTTCCEEEEECSBCCTTTTGG--------GTTSCEEEEEEEESSC
T ss_pred             --ccccCCEEECCCCCccccC-------chHhhcccCcccEEecCCCccccCchhh--------hhhceeeEEEeecccc
Confidence              2799999999999998732       2356788999999999999998643222        3444  7777777766

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.74  E-value=1.9e-18  Score=182.79  Aligned_cols=239  Identities=21%  Similarity=0.114  Sum_probs=173.8

Q ss_pred             cchhhcccccCcchhhhHh-hhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcc
Q 013056          162 HYARCLRLQNALCVEETCQ-LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK  240 (450)
Q Consensus       162 ~~l~~l~L~~~~~~~~~~~-l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~  240 (450)
                      ..++.++++++.+..++.. +.++++|++|++++|.+....+..    +.++++|++|+|++|.++......+..     
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~-----   95 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL----CQKLPMLKVLNLQHNELSQLSDKTFAF-----   95 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTH----HHHCTTCCEEECCSSCCCCCCTTTTTT-----
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHH----HhcccCcCEEECCCCccCccChhhhcc-----
Confidence            4677888888888776654 557899999999988865543332    567889999999999887544333332     


Q ss_pred             ccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCC
Q 013056          241 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  320 (450)
Q Consensus       241 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~  320 (450)
                         +.+|++|++++|.++..        .+..++++++|++|++++|.+++..+..+     ..+++|++|++++|.+++
T Consensus        96 ---l~~L~~L~L~~n~l~~~--------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~  159 (680)
T 1ziw_A           96 ---CTNLTELHLMSNSIQKI--------KNNPFVKQKNLITLDLSHNGLSSTKLGTQ-----VQLENLQELLLSNNKIQA  159 (680)
T ss_dssp             ---CTTCSEEECCSSCCCCC--------CSCTTTTCTTCCEEECCSSCCSCCCCCSS-----SCCTTCCEEECCSSCCCC
T ss_pred             ---CCCCCEEECCCCccCcc--------ChhHccccCCCCEEECCCCcccccCchhh-----cccccCCEEEccCCcccc
Confidence               68899999999988772        23456788899999999998877544332     457889999999998886


Q ss_pred             cccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCC
Q 013056          321 WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERC  400 (450)
Q Consensus       321 ~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~  400 (450)
                      ..+        ..+... .+++|+.|++++|.++.    ..+..+..+++|+.|++++|.++......+...    + ..
T Consensus       160 ~~~--------~~~~~~-~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~----l-~~  221 (680)
T 1ziw_A          160 LKS--------EELDIF-ANSSLKKLELSSNQIKE----FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE----L-AN  221 (680)
T ss_dssp             BCH--------HHHGGG-TTCEESEEECTTCCCCC----BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHH----H-TT
T ss_pred             cCH--------HHhhcc-ccccccEEECCCCcccc----cChhhhhhhhhhhhhhccccccChhhHHHHHHH----h-hh
Confidence            433        333322 35789999999998886    245667788899999999998887666655432    2 23


Q ss_pred             CCcCEEEccCCCCChhHHHHHHHHHhcCC-CCCcEEECcCCCCCcccc
Q 013056          401 NPLVELYLENCELSGRGVSQLLDTLSTLR-RPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       401 ~~L~~L~L~~n~l~~~g~~~l~~~l~~l~-~~L~~L~L~~N~l~~~~~  447 (450)
                      ++|+.|++++|.++..    .+..+..+. .+|++|++++|.+++..+
T Consensus       222 ~~L~~L~L~~n~l~~~----~~~~~~~l~~~~L~~L~Ls~n~l~~~~~  265 (680)
T 1ziw_A          222 TSIRNLSLSNSQLSTT----SNTTFLGLKWTNLTMLDLSYNNLNVVGN  265 (680)
T ss_dssp             SCCCEEECTTSCCCEE----CTTTTGGGGGSCCCEEECTTSCCCEECT
T ss_pred             ccccEEEccCCccccc----ChhHhhccCcCCCCEEECCCCCcCccCc
Confidence            7899999999998875    233343322 349999999999987654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.74  E-value=4.8e-18  Score=171.69  Aligned_cols=229  Identities=20%  Similarity=0.228  Sum_probs=176.0

Q ss_pred             hccccccceeccccc--------chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEE
Q 013056          148 CDYSKLSYHCQQFGH--------YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLE  219 (450)
Q Consensus       148 ~~l~~L~l~~~~~~~--------~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~  219 (450)
                      .+++.|.++.+.+..        .++.+++.+... .. ..+.++++|++|++++|.+.....      +..+++|+.|+
T Consensus       134 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~-~~-~~~~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~  205 (466)
T 1o6v_A          134 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT-DL-KPLANLTTLERLDISSNKVSDISV------LAKLTNLESLI  205 (466)
T ss_dssp             TTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC-CC-GGGTTCTTCCEEECCSSCCCCCGG------GGGCTTCSEEE
T ss_pred             CCCCEEECCCCccCCChhhccCCcccEeecCCccc-Cc-hhhccCCCCCEEECcCCcCCCChh------hccCCCCCEEE
Confidence            677777776653222        345555543322 22 236788999999999999655321      56889999999


Q ss_pred             ccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHH
Q 013056          220 FLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFS  299 (450)
Q Consensus       220 Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~  299 (450)
                      +++|.+++..+  +    ..    +++|++|++++|.+++.          ..+..+++|++|++++|.+++..+     
T Consensus       206 l~~n~l~~~~~--~----~~----l~~L~~L~l~~n~l~~~----------~~l~~l~~L~~L~l~~n~l~~~~~-----  260 (466)
T 1o6v_A          206 ATNNQISDITP--L----GI----LTNLDELSLNGNQLKDI----------GTLASLTNLTDLDLANNQISNLAP-----  260 (466)
T ss_dssp             CCSSCCCCCGG--G----GG----CTTCCEEECCSSCCCCC----------GGGGGCTTCSEEECCSSCCCCCGG-----
T ss_pred             ecCCccccccc--c----cc----cCCCCEEECCCCCcccc----------hhhhcCCCCCEEECCCCccccchh-----
Confidence            99999986543  1    11    68999999999999872          246788999999999999987543     


Q ss_pred             HHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCC
Q 013056          300 SLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN  379 (450)
Q Consensus       300 ~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N  379 (450)
                        +..+++|++|++++|.+++.         +. +.   .+++|+.|++++|.+++     ++. +..+++|+.|++++|
T Consensus       261 --~~~l~~L~~L~l~~n~l~~~---------~~-~~---~l~~L~~L~L~~n~l~~-----~~~-~~~l~~L~~L~L~~n  319 (466)
T 1o6v_A          261 --LSGLTKLTELKLGANQISNI---------SP-LA---GLTALTNLELNENQLED-----ISP-ISNLKNLTYLTLYFN  319 (466)
T ss_dssp             --GTTCTTCSEEECCSSCCCCC---------GG-GT---TCTTCSEEECCSSCCSC-----CGG-GGGCTTCSEEECCSS
T ss_pred             --hhcCCCCCEEECCCCccCcc---------cc-cc---CCCccCeEEcCCCcccC-----chh-hcCCCCCCEEECcCC
Confidence              35589999999999999862         12 33   67899999999999987     333 789999999999999


Q ss_pred             CCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056          380 TIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       380 ~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                      .+++.      +    .+..+++|++|++++|.+++.      ..+..+ .+|+.|++++|++++..|
T Consensus       320 ~l~~~------~----~~~~l~~L~~L~l~~n~l~~~------~~l~~l-~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          320 NISDI------S----PVSSLTKLQRLFFYNNKVSDV------SSLANL-TNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             CCSCC------G----GGGGCTTCCEEECCSSCCCCC------GGGTTC-TTCCEEECCSSCCCBCGG
T ss_pred             cCCCc------h----hhccCccCCEeECCCCccCCc------hhhccC-CCCCEEeCCCCccCccch
Confidence            99883      2    256779999999999999984      356664 449999999999998765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.74  E-value=2.1e-17  Score=171.92  Aligned_cols=222  Identities=17%  Similarity=0.152  Sum_probs=149.1

Q ss_pred             hcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCC-------
Q 013056          182 LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDI-------  254 (450)
Q Consensus       182 ~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~-------  254 (450)
                      ..+++|++|++++|.+....   ...+..++++|+.|++++| +++.+...+...       +++|++|++..       
T Consensus       286 ~~~~~L~~L~L~~~~l~~~~---l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~-------~~~L~~L~L~~~~~~g~~  354 (594)
T 2p1m_B          286 SVCSRLTTLNLSYATVQSYD---LVKLLCQCPKLQRLWVLDY-IEDAGLEVLAST-------CKDLRELRVFPSEPFVME  354 (594)
T ss_dssp             HHHTTCCEEECTTCCCCHHH---HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHH-------CTTCCEEEEECSCTTCSS
T ss_pred             HhhCCCCEEEccCCCCCHHH---HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHh-------CCCCCEEEEecCcccccc
Confidence            35688888888888844321   3334567888899988888 666666666554       67888888833       


Q ss_pred             --CCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEecc--C----CCCCCcccccC
Q 013056          255 --SSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLS--G----NSIGGWLSKYD  326 (450)
Q Consensus       255 --n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls--~----n~l~~~~~~~~  326 (450)
                        +.+++       ..+......+++|++|.++.|.+++.++..++..    +++|++|+++  +    +.+++...   
T Consensus       355 ~~~~l~~-------~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~----~~~L~~L~L~~~~~~~~~~l~~~~~---  420 (594)
T 2p1m_B          355 PNVALTE-------QGLVSVSMGCPKLESVLYFCRQMTNAALITIARN----RPNMTRFRLCIIEPKAPDYLTLEPL---  420 (594)
T ss_dssp             CSSCCCH-------HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHH----CTTCCEEEEEESSTTCCCTTTCCCT---
T ss_pred             cCCCCCH-------HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhh----CCCcceeEeecccCCCcccccCCch---
Confidence              34444       1233333457888888888888888777666543    6888899888  3    34442100   


Q ss_pred             cccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEE
Q 013056          327 RSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVEL  406 (450)
Q Consensus       327 ~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L  406 (450)
                      ...++..+.   .+++|+.|+|++ .+++.++..+..   .+++|+.|+|++|.+++.|+..++.       .+++|++|
T Consensus       421 ~~~~~~l~~---~~~~L~~L~L~~-~l~~~~~~~l~~---~~~~L~~L~L~~~~i~~~~~~~l~~-------~~~~L~~L  486 (594)
T 2p1m_B          421 DIGFGAIVE---HCKDLRRLSLSG-LLTDKVFEYIGT---YAKKMEMLSVAFAGDSDLGMHHVLS-------GCDSLRKL  486 (594)
T ss_dssp             HHHHHHHHH---HCTTCCEEECCS-SCCHHHHHHHHH---HCTTCCEEEEESCCSSHHHHHHHHH-------HCTTCCEE
T ss_pred             hhHHHHHHh---hCCCccEEeecC-cccHHHHHHHHH---hchhccEeeccCCCCcHHHHHHHHh-------cCCCcCEE
Confidence            011223333   457888888876 788766554433   4778888888888888887776642       24788888


Q ss_pred             EccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 013056          407 YLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC  446 (450)
Q Consensus       407 ~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~  446 (450)
                      +|++|.+++.++..+...+..    |++|++++|++++.+
T Consensus       487 ~L~~n~~~~~~~~~~~~~l~~----L~~L~l~~~~~~~~~  522 (594)
T 2p1m_B          487 EIRDCPFGDKALLANASKLET----MRSLWMSSCSVSFGA  522 (594)
T ss_dssp             EEESCSCCHHHHHHTGGGGGG----SSEEEEESSCCBHHH
T ss_pred             ECcCCCCcHHHHHHHHHhCCC----CCEEeeeCCCCCHHH
Confidence            888888887766655544433    888888888886543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.74  E-value=4.2e-18  Score=171.39  Aligned_cols=184  Identities=19%  Similarity=0.099  Sum_probs=105.9

Q ss_pred             chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056          163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  242 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~  242 (450)
                      .++.++++++.+..++  +..+++|++|++++|.+... +      +.++++|++|++++|.++...   +    .    
T Consensus        65 ~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~------~~~l~~L~~L~L~~N~l~~l~---~----~----  124 (457)
T 3bz5_A           65 GLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL-D------VTPLTKLTYLNCDTNKLTKLD---V----S----  124 (457)
T ss_dssp             TCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C------CTTCTTCCEEECCSSCCSCCC---C----T----
T ss_pred             CCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee-e------cCCCCcCCEEECCCCcCCeec---C----C----
Confidence            4455555555555442  44556666666666664432 1      345666666666666665421   1    1    


Q ss_pred             CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056          243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  322 (450)
Q Consensus       243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  322 (450)
                      .+++|++|++++|.+++.           .++.+++|++|++++|...+...       +..+++|++|++++|.+++  
T Consensus       125 ~l~~L~~L~l~~N~l~~l-----------~l~~l~~L~~L~l~~n~~~~~~~-------~~~l~~L~~L~ls~n~l~~--  184 (457)
T 3bz5_A          125 QNPLLTYLNCARNTLTEI-----------DVSHNTQLTELDCHLNKKITKLD-------VTPQTQLTTLDCSFNKITE--  184 (457)
T ss_dssp             TCTTCCEEECTTSCCSCC-----------CCTTCTTCCEEECTTCSCCCCCC-------CTTCTTCCEEECCSSCCCC--
T ss_pred             CCCcCCEEECCCCcccee-----------ccccCCcCCEEECCCCCcccccc-------cccCCcCCEEECCCCccce--
Confidence            146666666666666552           14456666666666663222121       1335666777777666664  


Q ss_pred             cccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCC
Q 013056          323 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP  402 (450)
Q Consensus       323 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~  402 (450)
                             ++     +..+++|+.|++++|.++.     +  .+..+++|+.|++++|++++      +|     +..+++
T Consensus       185 -------l~-----l~~l~~L~~L~l~~N~l~~-----~--~l~~l~~L~~L~Ls~N~l~~------ip-----~~~l~~  234 (457)
T 3bz5_A          185 -------LD-----VSQNKLLNRLNCDTNNITK-----L--DLNQNIQLTFLDCSSNKLTE------ID-----VTPLTQ  234 (457)
T ss_dssp             -------CC-----CTTCTTCCEEECCSSCCSC-----C--CCTTCTTCSEEECCSSCCSC------CC-----CTTCTT
T ss_pred             -------ec-----cccCCCCCEEECcCCcCCe-----e--ccccCCCCCEEECcCCcccc------cC-----ccccCC
Confidence                   11     2245667777777777765     2  25666777777777777765      33     455677


Q ss_pred             cCEEEccCCCCChh
Q 013056          403 LVELYLENCELSGR  416 (450)
Q Consensus       403 L~~L~L~~n~l~~~  416 (450)
                      |++|++++|.++..
T Consensus       235 L~~L~l~~N~l~~~  248 (457)
T 3bz5_A          235 LTYFDCSVNPLTEL  248 (457)
T ss_dssp             CSEEECCSSCCSCC
T ss_pred             CCEEEeeCCcCCCc
Confidence            77777777776663

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.74  E-value=3.6e-18  Score=163.02  Aligned_cols=190  Identities=17%  Similarity=0.199  Sum_probs=152.8

Q ss_pred             chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056          163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  242 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~  242 (450)
                      .++.+++.++.+..++ .+..+++|++|++++|.+.....      +..+++|+.|++++|.+++..  .    +..   
T Consensus        42 ~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~------~~~l~~L~~L~L~~n~l~~~~--~----~~~---  105 (308)
T 1h6u_A           42 GITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP------LKNLTKITELELSGNPLKNVS--A----IAG---  105 (308)
T ss_dssp             TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG------GTTCCSCCEEECCSCCCSCCG--G----GTT---
T ss_pred             CcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh------HccCCCCCEEEccCCcCCCch--h----hcC---
Confidence            4556677777766654 56788999999999999665433      578899999999999998642  2    222   


Q ss_pred             CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056          243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  322 (450)
Q Consensus       243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  322 (450)
                       +++|++|++++|.+++.         + .+..+++|++|++++|.+++..+       +..+++|++|++++|.+++. 
T Consensus       106 -l~~L~~L~l~~n~l~~~---------~-~l~~l~~L~~L~l~~n~l~~~~~-------l~~l~~L~~L~l~~n~l~~~-  166 (308)
T 1h6u_A          106 -LQSIKTLDLTSTQITDV---------T-PLAGLSNLQVLYLDLNQITNISP-------LAGLTNLQYLSIGNAQVSDL-  166 (308)
T ss_dssp             -CTTCCEEECTTSCCCCC---------G-GGTTCTTCCEEECCSSCCCCCGG-------GGGCTTCCEEECCSSCCCCC-
T ss_pred             -CCCCCEEECCCCCCCCc---------h-hhcCCCCCCEEECCCCccCcCcc-------ccCCCCccEEEccCCcCCCC-
Confidence             68999999999999872         1 27889999999999999987433       34589999999999999862 


Q ss_pred             cccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCC
Q 013056          323 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP  402 (450)
Q Consensus       323 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~  402 (450)
                              +. +   ..+++|+.|++++|.+++     ++. +..+++|++|+|++|++++      .+    .+..+++
T Consensus       167 --------~~-l---~~l~~L~~L~l~~n~l~~-----~~~-l~~l~~L~~L~L~~N~l~~------~~----~l~~l~~  218 (308)
T 1h6u_A          167 --------TP-L---ANLSKLTTLKADDNKISD-----ISP-LASLPNLIEVHLKNNQISD------VS----PLANTSN  218 (308)
T ss_dssp             --------GG-G---TTCTTCCEEECCSSCCCC-----CGG-GGGCTTCCEEECTTSCCCB------CG----GGTTCTT
T ss_pred             --------hh-h---cCCCCCCEEECCCCccCc-----Chh-hcCCCCCCEEEccCCccCc------cc----cccCCCC
Confidence                    22 3   367999999999999987     343 7899999999999999998      32    3678899


Q ss_pred             cCEEEccCCCCCh
Q 013056          403 LVELYLENCELSG  415 (450)
Q Consensus       403 L~~L~L~~n~l~~  415 (450)
                      |++|++++|.++.
T Consensus       219 L~~L~l~~N~i~~  231 (308)
T 1h6u_A          219 LFIVTLTNQTITN  231 (308)
T ss_dssp             CCEEEEEEEEEEC
T ss_pred             CCEEEccCCeeec
Confidence            9999999999876

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.73  E-value=5.9e-18  Score=174.41  Aligned_cols=206  Identities=15%  Similarity=0.182  Sum_probs=141.1

Q ss_pred             CCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCch
Q 013056          184 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS  263 (450)
Q Consensus       184 ~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~  263 (450)
                      ..+|+.|++++|.+......    ++.++++|+.|++++|.+++..+.... .+.    .+++|++|++++|.++..   
T Consensus       309 ~~~L~~L~l~~n~l~~ip~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~----~l~~L~~L~Ls~N~l~~~---  376 (549)
T 2z81_A          309 LEKVKRITVENSKVFLVPCS----FSQHLKSLEFLDLSENLMVEEYLKNSA-CKG----AWPSLQTLVLSQNHLRSM---  376 (549)
T ss_dssp             STTCCEEEEESSCCCCCCHH----HHHHCTTCCEEECCSSCCCHHHHHHHT-CTT----SSTTCCEEECTTSCCCCH---
T ss_pred             cccceEEEeccCccccCCHH----HHhcCccccEEEccCCccccccccchh-hhh----ccccCcEEEccCCccccc---
Confidence            35677777777775433222    245677888888888888865543211 011    157788888888888761   


Q ss_pred             hhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCce
Q 013056          264 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL  343 (450)
Q Consensus       264 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L  343 (450)
                         ......+..+++|++|++++|+++. .+..+     ..+++|++|++++|.+++.         +..+.     ++|
T Consensus       377 ---~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~-----~~~~~L~~L~Ls~N~l~~l---------~~~~~-----~~L  433 (549)
T 2z81_A          377 ---QKTGEILLTLKNLTSLDISRNTFHP-MPDSC-----QWPEKMRFLNLSSTGIRVV---------KTCIP-----QTL  433 (549)
T ss_dssp             ---HHHHHHGGGCTTCCEEECTTCCCCC-CCSCC-----CCCTTCCEEECTTSCCSCC---------CTTSC-----TTC
T ss_pred             ---ccchhhhhcCCCCCEEECCCCCCcc-CChhh-----cccccccEEECCCCCcccc---------cchhc-----CCc
Confidence               0123457778888888888888774 33322     3467888888888887641         12221     578


Q ss_pred             eEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHH
Q 013056          344 RLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLD  423 (450)
Q Consensus       344 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~  423 (450)
                      ++|+|++|+|+.     +   ...+++|++|+|++|+|+.      +|.    ...+++|++|+|++|+|+..    .+.
T Consensus       434 ~~L~Ls~N~l~~-----~---~~~l~~L~~L~Ls~N~l~~------ip~----~~~l~~L~~L~Ls~N~l~~~----~~~  491 (549)
T 2z81_A          434 EVLDVSNNNLDS-----F---SLFLPRLQELYISRNKLKT------LPD----ASLFPVLLVMKISRNQLKSV----PDG  491 (549)
T ss_dssp             SEEECCSSCCSC-----C---CCCCTTCCEEECCSSCCSS------CCC----GGGCTTCCEEECCSSCCCCC----CTT
T ss_pred             eEEECCCCChhh-----h---cccCChhcEEECCCCccCc------CCC----cccCccCCEEecCCCccCCc----CHH
Confidence            888888888886     2   2578899999999999885      542    34568999999999998874    344


Q ss_pred             HHhcCCCCCcEEECcCCCCCcccc
Q 013056          424 TLSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       424 ~l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                      .+..+ .+|++|++++|++.+..+
T Consensus       492 ~~~~l-~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          492 IFDRL-TSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             GGGGC-TTCCEEECCSSCBCCCHH
T ss_pred             HHhcC-cccCEEEecCCCccCCCc
Confidence            56664 349999999999887665

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.73  E-value=1.2e-18  Score=164.72  Aligned_cols=204  Identities=17%  Similarity=0.138  Sum_probs=149.0

Q ss_pred             hhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCC
Q 013056          181 LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIEN  260 (450)
Q Consensus       181 l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~  260 (450)
                      +.+++++++++++++.+......       -.++++.|+|++|.|+...+..+..        +.+|++|++++|.++..
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~-------~~~~l~~L~L~~N~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~   70 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPD-------LPKDTTILHLSENLLYTFSLATLMP--------YTRLTQLNLDRAELTKL   70 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSC-------CCTTCCEEECTTSCCSEEEGGGGTT--------CTTCCEEECTTSCCCEE
T ss_pred             ccccCCccEEECCCCCCCcCCCC-------CCCCCCEEEcCCCcCCccCHHHhhc--------CCCCCEEECCCCccCcc
Confidence            34567889999988886543321       1257899999999888655444433        68899999999988762


Q ss_pred             CchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCC
Q 013056          261 CPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSL  340 (450)
Q Consensus       261 ~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l  340 (450)
                      ..          .+.+++|++|++++|.++. .+..     +..+++|++|++++|.+++..+           ..+..+
T Consensus        71 ~~----------~~~l~~L~~L~Ls~N~l~~-l~~~-----~~~l~~L~~L~l~~N~l~~l~~-----------~~~~~l  123 (290)
T 1p9a_G           71 QV----------DGTLPVLGTLDLSHNQLQS-LPLL-----GQTLPALTVLDVSFNRLTSLPL-----------GALRGL  123 (290)
T ss_dssp             EC----------CSCCTTCCEEECCSSCCSS-CCCC-----TTTCTTCCEEECCSSCCCCCCS-----------STTTTC
T ss_pred             cC----------CCCCCcCCEEECCCCcCCc-Cchh-----hccCCCCCEEECCCCcCcccCH-----------HHHcCC
Confidence            21          1567889999999998874 3332     2447889999999998886443           334467


Q ss_pred             CceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHH
Q 013056          341 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ  420 (450)
Q Consensus       341 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~  420 (450)
                      ++|+.|+|++|+|+.    ..+..+..+++|+.|+|++|+|+.      +|.  ..+..+++|++|+|++|+|+.     
T Consensus       124 ~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~------l~~--~~~~~l~~L~~L~L~~N~l~~-----  186 (290)
T 1p9a_G          124 GELQELYLKGNELKT----LPPGLLTPTPKLEKLSLANNNLTE------LPA--GLLNGLENLDTLLLQENSLYT-----  186 (290)
T ss_dssp             TTCCEEECTTSCCCC----CCTTTTTTCTTCCEEECTTSCCSC------CCT--TTTTTCTTCCEEECCSSCCCC-----
T ss_pred             CCCCEEECCCCCCCc----cChhhcccccCCCEEECCCCcCCc------cCH--HHhcCcCCCCEEECCCCcCCc-----
Confidence            889999999998886    223346788899999999999886      442  456778899999999999886     


Q ss_pred             HHHHHhcCCCCCcEEECcCCCCCc
Q 013056          421 LLDTLSTLRRPPTSLSIADNNLGR  444 (450)
Q Consensus       421 l~~~l~~l~~~L~~L~L~~N~l~~  444 (450)
                      ++..+... .+|+.|+|++|++..
T Consensus       187 ip~~~~~~-~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          187 IPKGFFGS-HLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CCTTTTTT-CCCSEEECCSCCBCC
T ss_pred             cChhhccc-ccCCeEEeCCCCccC
Confidence            56666663 459999999998864

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.72  E-value=4e-18  Score=159.68  Aligned_cols=184  Identities=19%  Similarity=0.197  Sum_probs=145.0

Q ss_pred             cCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCC
Q 013056          211 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD  290 (450)
Q Consensus       211 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  290 (450)
                      .+++|+.|++++|.++...  .    +..    +++|++|++++|.+++.          ..+..+++|++|++++|.++
T Consensus        39 ~l~~L~~L~l~~~~i~~~~--~----l~~----l~~L~~L~l~~n~l~~~----------~~l~~l~~L~~L~L~~n~l~   98 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQ--G----IQY----LPNVRYLALGGNKLHDI----------SALKELTNLTYLILTGNQLQ   98 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCT--T----GGG----CTTCCEEECTTSCCCCC----------GGGTTCTTCCEEECTTSCCC
T ss_pred             cccceeeeeeCCCCccccc--c----ccc----CCCCcEEECCCCCCCCc----------hhhcCCCCCCEEECCCCccC
Confidence            4578999999999887532  1    222    68999999999999872          25778999999999999998


Q ss_pred             hhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCC
Q 013056          291 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN  370 (450)
Q Consensus       291 ~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~  370 (450)
                      +..+..+     ..+++|++|++++|.+++..+           ..+..+++|++|++++|.++.    ..+..+..+++
T Consensus        99 ~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~  158 (272)
T 3rfs_A           99 SLPNGVF-----DKLTNLKELVLVENQLQSLPD-----------GVFDKLTNLTYLNLAHNQLQS----LPKGVFDKLTN  158 (272)
T ss_dssp             CCCTTTT-----TTCTTCCEEECTTSCCCCCCT-----------TTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTT
T ss_pred             ccChhHh-----cCCcCCCEEECCCCcCCccCH-----------HHhccCCCCCEEECCCCccCc----cCHHHhccCcc
Confidence            7444322     457999999999999987444           223467899999999999986    22344688999


Q ss_pred             CCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056          371 LEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       371 L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                      |++|++++|++++      ++.  ..+..+++|++|++++|.++..    .+..+..+ .+|++|++++|++.+..|
T Consensus       159 L~~L~l~~n~l~~------~~~--~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l-~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          159 LTELDLSYNQLQS------LPE--GVFDKLTQLKDLRLYQNQLKSV----PDGVFDRL-TSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             CCEEECCSSCCCC------CCT--TTTTTCTTCCEEECCSSCCSCC----CTTTTTTC-TTCCEEECCSSCBCCCTT
T ss_pred             CCEEECCCCCcCc------cCH--HHhcCCccCCEEECCCCcCCcc----CHHHHhCC-cCCCEEEccCCCccccCc
Confidence            9999999999987      331  4578889999999999999874    33445664 459999999999987765

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.72  E-value=5.2e-19  Score=191.56  Aligned_cols=90  Identities=17%  Similarity=0.147  Sum_probs=66.9

Q ss_pred             CceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHH
Q 013056          341 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ  420 (450)
Q Consensus       341 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~  420 (450)
                      ++|+.|++++|.++.    ..+..+..+++|+.|+|++|.++..     .+   ..+..+++|++|+|++|.++..    
T Consensus       266 ~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~-----~~---~~~~~l~~L~~L~Ls~N~l~~~----  329 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFS----LNSRVFETLKDLKVLNLAYNKINKI-----AD---EAFYGLDNLQVLNLSYNLLGEL----  329 (844)
T ss_dssp             SCCCEEECTTCCCCE----ECSCCSSSCCCCCEEEEESCCCCEE-----CT---TTTTTCSSCCEEEEESCCCSCC----
T ss_pred             CCccEEECCCCcccc----cChhhhhcCCCCCEEECCCCcCCCC-----Ch---HHhcCCCCCCEEECCCCCCCcc----
Confidence            578888888888876    2355677888889999988888763     23   5577788899999999988764    


Q ss_pred             HHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056          421 LLDTLSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       421 l~~~l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                      .+..+..+. +|++|++++|.|++..+
T Consensus       330 ~~~~~~~l~-~L~~L~L~~N~i~~~~~  355 (844)
T 3j0a_A          330 YSSNFYGLP-KVAYIDLQKNHIAIIQD  355 (844)
T ss_dssp             CSCSCSSCT-TCCEEECCSCCCCCCCS
T ss_pred             CHHHhcCCC-CCCEEECCCCCCCccCh
Confidence            344556643 48999999998876543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.72  E-value=1.3e-18  Score=179.32  Aligned_cols=237  Identities=16%  Similarity=0.176  Sum_probs=179.4

Q ss_pred             cchhhcccccCcchhhh-HhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcc
Q 013056          162 HYARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK  240 (450)
Q Consensus       162 ~~l~~l~L~~~~~~~~~-~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~  240 (450)
                      ..++.++++++.+..++ ..+.++++|++|++++|.+....+..    +.++++|++|++++|.+++..+..+..     
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----   96 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA----FYSLGSLEHLDLSDNHLSSLSSSWFGP-----   96 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTSCCCSCCHHHHTT-----
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh----ccccccCCEEECCCCccCccCHHHhcc-----
Confidence            46677888888877664 45668899999999999966544322    578899999999999999877666654     


Q ss_pred             ccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHH-HHHHHHHhhCCCCCcEEeccCCCCC
Q 013056          241 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFG-RMVFSSLLEASSSLSILDLSGNSIG  319 (450)
Q Consensus       241 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~-~~l~~~L~~~~~~L~~L~Ls~n~l~  319 (450)
                         +.+|++|++++|.++...       .+..++.+++|++|++++|.+.+..+ ..+     ..+++|++|++++|.++
T Consensus        97 ---l~~L~~L~Ls~n~l~~~~-------~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-----~~l~~L~~L~L~~n~l~  161 (549)
T 2z81_A           97 ---LSSLKYLNLMGNPYQTLG-------VTSLFPNLTNLQTLRIGNVETFSEIRRIDF-----AGLTSLNELEIKALSLR  161 (549)
T ss_dssp             ---CTTCCEEECTTCCCSSSC-------SSCSCTTCTTCCEEEEEESSSCCEECTTTT-----TTCCEEEEEEEEETTCC
T ss_pred             ---CCCCcEEECCCCcccccc-------hhhhhhccCCccEEECCCCccccccCHhhh-----hcccccCeeeccCCccc
Confidence               789999999999988632       22356788999999999998433233 222     45799999999999998


Q ss_pred             CcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHh-hcCCCCCEEecCCCCCChhhHHHHHHHHHhhcC
Q 013056          320 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSAL-VHIPNLEILDISDNTIEDDGIRSLIPYFVQASE  398 (450)
Q Consensus       320 ~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l-~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~  398 (450)
                      +..+        ..++   .+++|++|+++.|.++.     ++..+ ..+++|++|++++|++++....   +.  ....
T Consensus       162 ~~~~--------~~l~---~l~~L~~L~l~~n~~~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~--~~~~  220 (549)
T 2z81_A          162 NYQS--------QSLK---SIRDIHHLTLHLSESAF-----LLEIFADILSSVRYLELRDTNLARFQFS---PL--PVDE  220 (549)
T ss_dssp             EECT--------TTTT---TCSEEEEEEEECSBSTT-----HHHHHHHSTTTBSEEEEESCBCTTCCCC---CC--SSCC
T ss_pred             ccCh--------hhhh---ccccCceEecccCcccc-----cchhhHhhcccccEEEccCCcccccccc---cc--chhh
Confidence            7555        3444   67899999999999875     55544 5789999999999999762100   00  1234


Q ss_pred             CCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056          399 RCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  444 (450)
Q Consensus       399 ~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~  444 (450)
                      .+++|+.|++++|.+++.+...+...+..+ .+|+.+++++|.+.+
T Consensus       221 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~-~~L~~l~l~~~~~~~  265 (549)
T 2z81_A          221 VSSPMKKLAFRGSVLTDESFNELLKLLRYI-LELSEVEFDDCTLNG  265 (549)
T ss_dssp             CCCCCCEEEEESCEEEHHHHHHHHGGGGGC-TTCCEEEEESCEEEC
T ss_pred             hhhcccceeccccccchhHHHHHHHHhhhh-ccccccccccccccc
Confidence            568999999999999998888887777764 448999998887654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.72  E-value=4.6e-18  Score=176.66  Aligned_cols=209  Identities=19%  Similarity=0.147  Sum_probs=134.2

Q ss_pred             chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056          163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  242 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~  242 (450)
                      .++.|++++|.+..++.   .+++|++|++++|.+.....        .+++|+.|++++|+|+...         ..  
T Consensus        82 ~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~--------~l~~L~~L~L~~N~l~~lp---------~~--  139 (622)
T 3g06_A           82 ELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA--------LPSGLCKLWIFGNQLTSLP---------VL--  139 (622)
T ss_dssp             TCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC--------CCTTCCEEECCSSCCSCCC---------CC--
T ss_pred             CCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC--------CCCCcCEEECCCCCCCcCC---------CC--
Confidence            55667777777665554   55777777777777544211        4467777777777776311         11  


Q ss_pred             CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056          243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  322 (450)
Q Consensus       243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  322 (450)
                       .++|++|++++|.++....            ..++|+.|++++|.++. .+        ..+++|+.|++++|.+++..
T Consensus       140 -l~~L~~L~Ls~N~l~~l~~------------~~~~L~~L~L~~N~l~~-l~--------~~~~~L~~L~Ls~N~l~~l~  197 (622)
T 3g06_A          140 -PPGLQELSVSDNQLASLPA------------LPSELCKLWAYNNQLTS-LP--------MLPSGLQELSVSDNQLASLP  197 (622)
T ss_dssp             -CTTCCEEECCSSCCSCCCC------------CCTTCCEEECCSSCCSC-CC--------CCCTTCCEEECCSSCCSCCC
T ss_pred             -CCCCCEEECcCCcCCCcCC------------ccCCCCEEECCCCCCCC-Cc--------ccCCCCcEEECCCCCCCCCC
Confidence             4678888888887766321            12445555555555544 11        11355666666666555311


Q ss_pred             cccCcccHHHhhh----------CC-CCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHH
Q 013056          323 SKYDRSGPLFSLG----------AG-KSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIP  391 (450)
Q Consensus       323 ~~~~~~~l~~~l~----------~~-~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~  391 (450)
                      .      .+..+.          .+ ..+++|+.|+|++|.|+.     +|   ..+++|+.|+|++|.|+.      +|
T Consensus       198 ~------~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-----lp---~~l~~L~~L~Ls~N~L~~------lp  257 (622)
T 3g06_A          198 T------LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-----LP---VLPSELKELMVSGNRLTS------LP  257 (622)
T ss_dssp             C------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-----CC---CCCTTCCEEECCSSCCSC------CC
T ss_pred             C------ccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-----CC---CCCCcCcEEECCCCCCCc------CC
Confidence            0      000000          00 123678999999998886     55   566889999999999986      54


Q ss_pred             HHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056          392 YFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       392 ~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                         .   .+++|++|+|++|.|+.     ++..+..+. +|+.|+|++|+|++..+
T Consensus       258 ---~---~~~~L~~L~Ls~N~L~~-----lp~~l~~l~-~L~~L~L~~N~l~~~~~  301 (622)
T 3g06_A          258 ---M---LPSGLLSLSVYRNQLTR-----LPESLIHLS-SETTVNLEGNPLSERTL  301 (622)
T ss_dssp             ---C---CCTTCCEEECCSSCCCS-----CCGGGGGSC-TTCEEECCSCCCCHHHH
T ss_pred             ---c---ccccCcEEeCCCCCCCc-----CCHHHhhcc-ccCEEEecCCCCCCcCH
Confidence               2   45899999999999996     677788854 49999999999987655

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.71  E-value=3.8e-18  Score=157.89  Aligned_cols=205  Identities=18%  Similarity=0.168  Sum_probs=137.1

Q ss_pred             CccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhh
Q 013056          186 KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV  265 (450)
Q Consensus       186 ~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~  265 (450)
                      ..++++++++.+......       -.++++.|+|++|.++......+..        +++|++|++++|.++.      
T Consensus        15 ~~~~l~~~~~~l~~~p~~-------~~~~l~~L~L~~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~------   73 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSG-------IPADTEKLDLQSTGLATLSDATFRG--------LTKLTWLNLDYNQLQT------   73 (251)
T ss_dssp             GGTEEECTTCCCSSCCSC-------CCTTCCEEECTTSCCCCCCTTTTTT--------CTTCCEEECTTSCCCC------
T ss_pred             CCeEEecCCCCccccCCC-------CCCCCCEEEccCCCcCccCHhHhcC--------cccCCEEECCCCcCCc------
Confidence            456677777665443221       1246888888888877654443332        5788888888888877      


Q ss_pred             HHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeE
Q 013056          266 VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRL  345 (450)
Q Consensus       266 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~  345 (450)
                        ..+..+..+++|++|+|++|.+++..+..     +..+++|++|+|++|.+++..+           ..+..+++|+.
T Consensus        74 --~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~L~L~~N~l~~~~~-----------~~~~~l~~L~~  135 (251)
T 3m19_A           74 --LSAGVFDDLTELGTLGLANNQLASLPLGV-----FDHLTQLDKLYLGGNQLKSLPS-----------GVFDRLTKLKE  135 (251)
T ss_dssp             --CCTTTTTTCTTCCEEECTTSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCT-----------TTTTTCTTCCE
T ss_pred             --cCHhHhccCCcCCEEECCCCcccccChhH-----hcccCCCCEEEcCCCcCCCcCh-----------hHhccCCcccE
Confidence              33445677889999999999887643332     2457899999999998886433           22346788999


Q ss_pred             EEccCCCCChhhHHHHHH-HhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChh--HHHHHH
Q 013056          346 LNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR--GVSQLL  422 (450)
Q Consensus       346 L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~--g~~~l~  422 (450)
                      |+|++|+|+.     ++. .+..+++|++|+|++|+++.      ++.  ..+..+++|++|+|++|.++..  ....+.
T Consensus       136 L~Ls~N~l~~-----~~~~~~~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~  202 (251)
T 3m19_A          136 LRLNTNQLQS-----IPAGAFDKLTNLQTLSLSTNQLQS------VPH--GAFDRLGKLQTITLFGNQFDCSRCEILYLS  202 (251)
T ss_dssp             EECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTCCEEECCSCCBCTTSTTHHHHH
T ss_pred             EECcCCcCCc-----cCHHHcCcCcCCCEEECCCCcCCc------cCH--HHHhCCCCCCEEEeeCCceeCCccccHHHH
Confidence            9999999986     444 57888999999999999886      331  4577788999999999998764  344455


Q ss_pred             HHHhcCCCCCcEEECcCCCCCc
Q 013056          423 DTLSTLRRPPTSLSIADNNLGR  444 (450)
Q Consensus       423 ~~l~~l~~~L~~L~L~~N~l~~  444 (450)
                      ..+.. +. .+..+..++.+.+
T Consensus       203 ~~~~~-~~-~~~~~~~~~~~~~  222 (251)
T 3m19_A          203 QWIRE-NS-NKVKDGTGQNLHE  222 (251)
T ss_dssp             HHHHH-SG-GGBCC-------C
T ss_pred             HHHHh-cc-cceeeccCccccc
Confidence            55554 22 3334444554433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.71  E-value=6.7e-18  Score=174.65  Aligned_cols=181  Identities=22%  Similarity=0.238  Sum_probs=137.5

Q ss_pred             CCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChh
Q 013056          213 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD  292 (450)
Q Consensus       213 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  292 (450)
                      .+|+.|++++|.+.....          ...+++|++|++++|.+++        ..+..+..+++|++|++++|++++.
T Consensus       331 ~~L~~L~l~~n~~~~~~~----------~~~l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~  392 (562)
T 3a79_B          331 MNIKMLSISDTPFIHMVC----------PPSPSSFTFLNFTQNVFTD--------SVFQGCSTLKRLQTLILQRNGLKNF  392 (562)
T ss_dssp             CCCSEEEEESSCCCCCCC----------CSSCCCCCEEECCSSCCCT--------TTTTTCCSCSSCCEEECCSSCCCBT
T ss_pred             CcceEEEccCCCcccccC----------ccCCCCceEEECCCCcccc--------chhhhhcccCCCCEEECCCCCcCCc
Confidence            578888888887764221          0126889999999999988        5566778899999999999999862


Q ss_pred             --HHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCC
Q 013056          293 --FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN  370 (450)
Q Consensus       293 --~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~  370 (450)
                        .+..     +..+++|++|++++|.+++..+        .  ..+..+++|+.|++++|.++..    ++..+.  ++
T Consensus       393 ~~~~~~-----~~~l~~L~~L~l~~N~l~~~~~--------~--~~~~~l~~L~~L~l~~n~l~~~----~~~~l~--~~  451 (562)
T 3a79_B          393 FKVALM-----TKNMSSLETLDVSLNSLNSHAY--------D--RTCAWAESILVLNLSSNMLTGS----VFRCLP--PK  451 (562)
T ss_dssp             THHHHT-----TTTCTTCCEEECTTSCCBSCCS--------S--CCCCCCTTCCEEECCSSCCCGG----GGSSCC--TT
T ss_pred             ccchhh-----hcCCCCCCEEECCCCcCCCccC--------h--hhhcCcccCCEEECCCCCCCcc----hhhhhc--Cc
Confidence              2222     3557999999999999886333        1  2344678999999999999862    333322  68


Q ss_pred             CCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHH-HhcCCCCCcEEECcCCCCCcccc
Q 013056          371 LEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDT-LSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       371 L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~-l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                      |+.|+|++|+|+.      +|   ..+..+++|++|+|++|+|+.     ++.. +..+ .+|++|++++|++.+..+
T Consensus       452 L~~L~L~~N~l~~------ip---~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~~l-~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          452 VKVLDLHNNRIMS------IP---KDVTHLQALQELNVASNQLKS-----VPDGVFDRL-TSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CSEEECCSSCCCC------CC---TTTTSSCCCSEEECCSSCCCC-----CCTTSTTTC-TTCCCEECCSCCBCCCHH
T ss_pred             CCEEECCCCcCcc------cC---hhhcCCCCCCEEECCCCCCCC-----CCHHHHhcC-CCCCEEEecCCCcCCCcc
Confidence            9999999999986      55   445588999999999999997     4444 6664 449999999999987543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.70  E-value=1.3e-17  Score=167.92  Aligned_cols=177  Identities=15%  Similarity=0.160  Sum_probs=108.0

Q ss_pred             hccccccceecccc-----c--chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEc
Q 013056          148 CDYSKLSYHCQQFG-----H--YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEF  220 (450)
Q Consensus       148 ~~l~~L~l~~~~~~-----~--~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~L  220 (450)
                      .+++.|+++...+.     .  .++.+++++|.+..++  +.++++|++|++++|.+... +      +..+++|+.|++
T Consensus        64 ~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l-~------~~~l~~L~~L~l  134 (457)
T 3bz5_A           64 TGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKL-D------VSQNPLLTYLNC  134 (457)
T ss_dssp             TTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCC-C------CTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCee-c------CCCCCcCCEEEC
Confidence            55555555544221     1  4566667777666543  55667777777777775442 1      456677777777


Q ss_pred             cCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHH
Q 013056          221 LHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSS  300 (450)
Q Consensus       221 s~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~  300 (450)
                      ++|.++...   +        ..+++|++|++++|...+        .+  .+..+++|++|++++|++++. +      
T Consensus       135 ~~N~l~~l~---l--------~~l~~L~~L~l~~n~~~~--------~~--~~~~l~~L~~L~ls~n~l~~l-~------  186 (457)
T 3bz5_A          135 ARNTLTEID---V--------SHNTQLTELDCHLNKKIT--------KL--DVTPQTQLTTLDCSFNKITEL-D------  186 (457)
T ss_dssp             TTSCCSCCC---C--------TTCTTCCEEECTTCSCCC--------CC--CCTTCTTCCEEECCSSCCCCC-C------
T ss_pred             CCCccceec---c--------ccCCcCCEEECCCCCccc--------cc--ccccCCcCCEEECCCCcccee-c------
Confidence            777776531   1        115677777777774333        11  244567777777777777662 1      


Q ss_pred             HhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCC
Q 013056          301 LLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNT  380 (450)
Q Consensus       301 L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~  380 (450)
                       +..+++|+.|++++|.+++.              .+..+++|+.|++++|+++.     +|  +..+++|+.|++++|+
T Consensus       187 -l~~l~~L~~L~l~~N~l~~~--------------~l~~l~~L~~L~Ls~N~l~~-----ip--~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          187 -VSQNKLLNRLNCDTNNITKL--------------DLNQNIQLTFLDCSSNKLTE-----ID--VTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             -CTTCTTCCEEECCSSCCSCC--------------CCTTCTTCSEEECCSSCCSC-----CC--CTTCTTCSEEECCSSC
T ss_pred             -cccCCCCCEEECcCCcCCee--------------ccccCCCCCEEECcCCcccc-----cC--ccccCCCCEEEeeCCc
Confidence             23456777777777777651              12355677777777777775     44  6667777777777777


Q ss_pred             CCh
Q 013056          381 IED  383 (450)
Q Consensus       381 l~~  383 (450)
                      +++
T Consensus       245 l~~  247 (457)
T 3bz5_A          245 LTE  247 (457)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            765

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.70  E-value=7.3e-19  Score=190.39  Aligned_cols=63  Identities=14%  Similarity=-0.013  Sum_probs=30.5

Q ss_pred             chhhcccccCcchh-hhHh--hhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChh
Q 013056          163 YARCLRLQNALCVE-ETCQ--LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPS  228 (450)
Q Consensus       163 ~l~~l~L~~~~~~~-~~~~--l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~  228 (450)
                      .++.|++++|.+.. .+..  +.++++|++|+|++|.+.....   ...+.++++|+.|++++|.++..
T Consensus        98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~---~~~~~~L~~L~~L~Ls~N~i~~~  163 (844)
T 3j0a_A           98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL---HPSFGKLNSLKSIDFSSNQIFLV  163 (844)
T ss_dssp             SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC---CGGGGTCSSCCEEEEESSCCCCC
T ss_pred             ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc---chhHhhCCCCCEEECCCCcCCee
Confidence            34455555555543 1222  3455666666666665432211   00134556666666666655543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.70  E-value=5.8e-18  Score=156.66  Aligned_cols=180  Identities=20%  Similarity=0.210  Sum_probs=141.8

Q ss_pred             CCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChh
Q 013056          213 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD  292 (450)
Q Consensus       213 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  292 (450)
                      ...++++++++.++.... .+          ..+++.|++++|.++.        ..+..+.++++|++|+|++|.+++.
T Consensus        14 ~~~~~l~~~~~~l~~~p~-~~----------~~~l~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~n~l~~~   74 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPS-GI----------PADTEKLDLQSTGLAT--------LSDATFRGLTKLTWLNLDYNQLQTL   74 (251)
T ss_dssp             GGGTEEECTTCCCSSCCS-CC----------CTTCCEEECTTSCCCC--------CCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred             CCCeEEecCCCCccccCC-CC----------CCCCCEEEccCCCcCc--------cCHhHhcCcccCCEEECCCCcCCcc
Confidence            357889999998873221 11          3679999999999988        3345677899999999999999885


Q ss_pred             HHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHH-HhhcCCCC
Q 013056          293 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNL  371 (450)
Q Consensus       293 ~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L  371 (450)
                      .+..+     ..+++|++|+|++|.+++..+           ..+..+++|++|+|++|.|+.     ++. .+..+++|
T Consensus        75 ~~~~~-----~~l~~L~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L  133 (251)
T 3m19_A           75 SAGVF-----DDLTELGTLGLANNQLASLPL-----------GVFDHLTQLDKLYLGGNQLKS-----LPSGVFDRLTKL  133 (251)
T ss_dssp             CTTTT-----TTCTTCCEEECTTSCCCCCCT-----------TTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCTTC
T ss_pred             CHhHh-----ccCCcCCEEECCCCcccccCh-----------hHhcccCCCCEEEcCCCcCCC-----cChhHhccCCcc
Confidence            44333     457999999999999987443           333467999999999999996     444 46789999


Q ss_pred             CEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056          372 EILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF  445 (450)
Q Consensus       372 ~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~  445 (450)
                      ++|+|++|+|+.      ++.  ..+..+++|++|+|++|.|+..    .+..+..+ .+|++|++++|++...
T Consensus       134 ~~L~Ls~N~l~~------~~~--~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l-~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          134 KELRLNTNQLQS------IPA--GAFDKLTNLQTLSLSTNQLQSV----PHGAFDRL-GKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CEEECCSSCCCC------CCT--TTTTTCTTCCEEECCSSCCSCC----CTTTTTTC-TTCCEEECCSCCBCTT
T ss_pred             cEEECcCCcCCc------cCH--HHcCcCcCCCEEECCCCcCCcc----CHHHHhCC-CCCCEEEeeCCceeCC
Confidence            999999999987      432  4678889999999999999874    23355664 4499999999999875

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.69  E-value=6.2e-16  Score=136.00  Aligned_cols=142  Identities=13%  Similarity=0.081  Sum_probs=106.7

Q ss_pred             HHHHHHHHHhcCCCccEEEccCC-CCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCC
Q 013056          201 VQALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSL  279 (450)
Q Consensus       201 ~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L  279 (450)
                      +...+..++...++|++|+|++| .|++.+...++..+.                                    .+++|
T Consensus        24 ~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~------------------------------------~~~~L   67 (185)
T 1io0_A           24 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALK------------------------------------TNTYV   67 (185)
T ss_dssp             HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHT------------------------------------TCCSC
T ss_pred             HHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHH------------------------------------hCCCc
Confidence            34444555667788888888888 888877777666543                                    44667


Q ss_pred             CEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEc--cCCCCChhh
Q 013056          280 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNL--RGNNLCKAD  357 (450)
Q Consensus       280 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L--~~n~l~~~~  357 (450)
                      ++|+|++|.+++.+...+++++..+ ++|++|+|++|.|++    .+...++..+.   ..++|++|+|  ++|.|+++|
T Consensus        68 ~~L~Ls~n~i~~~g~~~l~~~L~~n-~~L~~L~L~~N~i~~----~g~~~l~~~L~---~n~~L~~L~L~~~~N~i~~~g  139 (185)
T 1io0_A           68 KKFSIVGTRSNDPVAFALAEMLKVN-NTLKSLNVESNFISG----SGILALVEALQ---SNTSLIELRIDNQSQPLGNNV  139 (185)
T ss_dssp             CEEECTTSCCCHHHHHHHHHHHHHC-SSCCEEECCSSCCCH----HHHHHHHHGGG---GCSSCCEEECCCCSSCCCHHH
T ss_pred             CEEECcCCCCChHHHHHHHHHHHhC-CCcCEEECcCCcCCH----HHHHHHHHHHH---hCCCceEEEecCCCCCCCHHH
Confidence            7777777777777777777766543 667777777777763    33344455555   4478999999  889999999


Q ss_pred             HHHHHHHhhcCCCCCEEecCCCCCChhhH
Q 013056          358 ARDLGSALVHIPNLEILDISDNTIEDDGI  386 (450)
Q Consensus       358 ~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~  386 (450)
                      +..+.+.+..+++|++|+|++|.|++.|.
T Consensus       140 ~~~l~~~L~~n~~L~~L~L~~n~i~~~~~  168 (185)
T 1io0_A          140 EMEIANMLEKNTTLLKFGYHFTQQGPRLR  168 (185)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCSSHHHHHH
T ss_pred             HHHHHHHHHhCCCcCEEeccCCCCChHHH
Confidence            99999999999999999999999998873

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=99.68  E-value=6.3e-16  Score=135.30  Aligned_cols=134  Identities=13%  Similarity=0.236  Sum_probs=77.4

Q ss_pred             HHHHhhcCCCCCCEEecCCC-CCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEE
Q 013056          268 ELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLL  346 (450)
Q Consensus       268 ~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L  346 (450)
                      .+...+...+.|++|+|++| .|++.+...++++|..+ +.|++|+|++|.|+                           
T Consensus        32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N-~~L~~L~L~~n~ig---------------------------   83 (197)
T 1pgv_A           32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAIS---------------------------   83 (197)
T ss_dssp             HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCB---------------------------
T ss_pred             HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhC-CCcCEEEccCCCCC---------------------------
Confidence            56677777888899999885 88888888888887543 45555555555554                           


Q ss_pred             EccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCC---CCChhHHHHHHH
Q 013056          347 NLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENC---ELSGRGVSQLLD  423 (450)
Q Consensus       347 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n---~l~~~g~~~l~~  423 (450)
                              +.|++.|++++..++.|++|+|+.|.|++.|+.+++    +++...+.|++|+|++|   .+++.|..++++
T Consensus        84 --------d~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala----~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~  151 (197)
T 1pgv_A           84 --------DSEARGLIELIETSPSLRVLNVESNFLTPELLARLL----RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM  151 (197)
T ss_dssp             --------HHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH----HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH
T ss_pred             --------hHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH----HHHhhCCceeEEECCCCcCcCcCHHHHHHHHH
Confidence                    444444555555555555555555555555555544    23444444555555433   345555555555


Q ss_pred             HHhcCCCCCcEEECcCCCC
Q 013056          424 TLSTLRRPPTSLSIADNNL  442 (450)
Q Consensus       424 ~l~~l~~~L~~L~L~~N~l  442 (450)
                      .+.. +++|+.|+++.|.+
T Consensus       152 aL~~-N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          152 AIEE-NESLLRVGISFASM  169 (197)
T ss_dssp             HHHH-CSSCCEEECCCCCH
T ss_pred             HHHh-CCCcCeEeccCCCc
Confidence            5544 44455555544443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.67  E-value=2.2e-18  Score=178.31  Aligned_cols=229  Identities=17%  Similarity=0.141  Sum_probs=169.5

Q ss_pred             chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056          163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  242 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~  242 (450)
                      .++.+++.++.+..++..+..+ +|++|++++|.+... +      ...+++|+.|++++|.+......          .
T Consensus       283 ~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l-~------~~~l~~L~~L~l~~n~~~~~~~~----------~  344 (570)
T 2z63_A          283 NVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQF-P------TLKLKSLKRLTFTSNKGGNAFSE----------V  344 (570)
T ss_dssp             TCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSC-C------BCBCSSCCEEEEESCBSCCBCCC----------C
T ss_pred             cccEEEecCccchhhhhhhccC-CccEEeeccCccccc-C------cccccccCEEeCcCCcccccccc----------c
Confidence            4566677777777666666666 888888888875522 2      13677888888888876543221          1


Q ss_pred             CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056          243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  322 (450)
Q Consensus       243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  322 (450)
                      .+++|++|++++|.++....      .+..+..+++|++|++++|.+.+..+.      +..+++|++|++++|.+.+..
T Consensus       345 ~~~~L~~L~l~~n~l~~~~~------~~~~~~~~~~L~~L~l~~n~l~~~~~~------~~~l~~L~~L~l~~n~l~~~~  412 (570)
T 2z63_A          345 DLPSLEFLDLSRNGLSFKGC------CSQSDFGTTSLKYLDLSFNGVITMSSN------FLGLEQLEHLDFQHSNLKQMS  412 (570)
T ss_dssp             BCTTCCEEECCSSCCBEEEE------EEHHHHTCSCCCEEECCSCSEEEEEEE------EETCTTCCEEECTTSEEESCT
T ss_pred             cCCCCCEEeCcCCccCcccc------ccccccccCccCEEECCCCcccccccc------ccccCCCCEEEccCCcccccc
Confidence            26889999999998876221      134566789999999999988763322      245789999999999887532


Q ss_pred             cccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCC
Q 013056          323 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP  402 (450)
Q Consensus       323 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~  402 (450)
                      +          ...+..+++|+.|++++|.++.    ..+..+..+++|++|++++|.+++..    +|   ..+..+++
T Consensus       413 ~----------~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~----~p---~~~~~l~~  471 (570)
T 2z63_A          413 E----------FSVFLSLRNLIYLDISHTHTRV----AFNGIFNGLSSLEVLKMAGNSFQENF----LP---DIFTELRN  471 (570)
T ss_dssp             T----------SCTTTTCTTCCEEECTTSCCEE----CCTTTTTTCTTCCEEECTTCEEGGGE----EC---SCCTTCTT
T ss_pred             c----------hhhhhcCCCCCEEeCcCCcccc----cchhhhhcCCcCcEEECcCCcCcccc----ch---hhhhcccC
Confidence            2          1233467999999999999987    35667889999999999999987421    34   56888899


Q ss_pred             cCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056          403 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       403 L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                      |++|++++|+++..    .+..+..+ .+|++|++++|.+++..+
T Consensus       472 L~~L~l~~n~l~~~----~~~~~~~l-~~L~~L~l~~n~l~~~~~  511 (570)
T 2z63_A          472 LTFLDLSQCQLEQL----SPTAFNSL-SSLQVLNMASNQLKSVPD  511 (570)
T ss_dssp             CCEEECTTSCCCEE----CTTTTTTC-TTCCEEECCSSCCSCCCT
T ss_pred             CCEEECCCCccccC----Chhhhhcc-cCCCEEeCCCCcCCCCCH
Confidence            99999999999985    35566664 459999999999988654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.67  E-value=5.8e-17  Score=153.32  Aligned_cols=171  Identities=23%  Similarity=0.198  Sum_probs=110.6

Q ss_pred             cCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCc
Q 013056          183 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP  262 (450)
Q Consensus       183 ~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~  262 (450)
                      .+++|+.|++++|.+.... .     +..+++|+.|++++|.+++...  +..        +++|++|++++|.++.   
T Consensus        44 ~l~~L~~L~l~~~~i~~~~-~-----~~~l~~L~~L~L~~n~l~~~~~--l~~--------l~~L~~L~l~~n~l~~---  104 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQ-G-----IQYLPNVTKLFLNGNKLTDIKP--LAN--------LKNLGWLFLDENKVKD---  104 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCT-T-----GGGCTTCCEEECCSSCCCCCGG--GTT--------CTTCCEEECCSSCCCC---
T ss_pred             hcCcccEEEccCCCcccCh-h-----HhcCCCCCEEEccCCccCCCcc--ccc--------CCCCCEEECCCCcCCC---
Confidence            4567788888777754431 1     4567778888888887775432  211        5777777777777765   


Q ss_pred             hhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCc
Q 013056          263 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS  342 (450)
Q Consensus       263 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~  342 (450)
                            + ..+..+++|++|++++|.+++.  ..     +..+++|++|++++|.+++.          ..+.   .+++
T Consensus       105 ------~-~~l~~l~~L~~L~L~~n~i~~~--~~-----l~~l~~L~~L~l~~n~l~~~----------~~l~---~l~~  157 (291)
T 1h6t_A          105 ------L-SSLKDLKKLKSLSLEHNGISDI--NG-----LVHLPQLESLYLGNNKITDI----------TVLS---RLTK  157 (291)
T ss_dssp             ------G-GGGTTCTTCCEEECTTSCCCCC--GG-----GGGCTTCCEEECCSSCCCCC----------GGGG---GCTT
T ss_pred             ------C-hhhccCCCCCEEECCCCcCCCC--hh-----hcCCCCCCEEEccCCcCCcc----------hhhc---cCCC
Confidence                  1 1256677777777777777662  11     23467777777777777652          1223   4567


Q ss_pred             eeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056          343 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  415 (450)
Q Consensus       343 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  415 (450)
                      |+.|++++|.+++     ++. +..+++|++|++++|.|++      ++    .+..+++|+.|++++|.++.
T Consensus       158 L~~L~L~~N~l~~-----~~~-l~~l~~L~~L~L~~N~i~~------l~----~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          158 LDTLSLEDNQISD-----IVP-LAGLTKLQNLYLSKNHISD------LR----ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CSEEECCSSCCCC-----CGG-GTTCTTCCEEECCSSCCCB------CG----GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCEEEccCCcccc-----chh-hcCCCccCEEECCCCcCCC------Ch----hhccCCCCCEEECcCCcccC
Confidence            7777777777775     333 6677777777777777776      32    35666777777777777655

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.66  E-value=1.3e-17  Score=174.40  Aligned_cols=86  Identities=17%  Similarity=0.073  Sum_probs=48.6

Q ss_pred             chhhcccccCcchhhhHhh-hcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHH-HHHHHHHhcc
Q 013056          163 YARCLRLQNALCVEETCQL-LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFV-EGICRSLCSK  240 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l-~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~-~~l~~~L~~~  240 (450)
                      .++.|+|++|.+..++... .++++|++|++++|.+.......    +.++++|++|++++|.|+.... ..+..     
T Consensus       101 ~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~----~~~L~~L~~L~Ls~N~l~~~~~~~~~~~-----  171 (635)
T 4g8a_A          101 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP----IGHLKTLKELNVAHNLIQSFKLPEYFSN-----  171 (635)
T ss_dssp             TCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCC----CTTCTTCCEEECCSSCCCCCCCCGGGGG-----
T ss_pred             CCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhh----hhcCcccCeeccccCccccCCCchhhcc-----
Confidence            4456666666666665543 35667777777766644332211    4566667777777776653211 11111     


Q ss_pred             ccCCCCeeEEEcCCCCCCCC
Q 013056          241 RKRIHKIENLSIDISSFIEN  260 (450)
Q Consensus       241 ~~~~~~L~~L~L~~n~i~~~  260 (450)
                         +.+|++|++++|+++..
T Consensus       172 ---l~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          172 ---LTNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             ---CTTCCEEECCSSCCCEE
T ss_pred             ---chhhhhhcccCcccccc
Confidence               46677777777766553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.66  E-value=2.2e-18  Score=158.22  Aligned_cols=197  Identities=15%  Similarity=0.068  Sum_probs=139.2

Q ss_pred             CCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCC-CChhHHHHHHHHHhccccCCCCeeEEEcCC-CCCCCCCc
Q 013056          185 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCSKRKRIHKIENLSIDI-SSFIENCP  262 (450)
Q Consensus       185 ~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~-n~i~~~~~  262 (450)
                      .++++|++++|.+.......    +.++++|+.|++++|. ++......+..        +++|++|++++ |.++.   
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~----~~~l~~L~~L~l~~n~~l~~i~~~~f~~--------l~~L~~L~l~~~n~l~~---   95 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHA----FSNLPNISRIYVSIDVTLQQLESHSFYN--------LSKVTHIEIRNTRNLTY---   95 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTT----TTTCTTCCEEEEECCSSCCEECTTTEES--------CTTCCEEEEEEETTCCE---
T ss_pred             CcccEEEEeCCcceEECHHH----ccCCCCCcEEeCCCCCCcceeCHhHcCC--------CcCCcEEECCCCCCeeE---
Confidence            47888888888865543322    5678888899998886 76443323222        67888899987 88876   


Q ss_pred             hhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCc---EEeccCC-CCCCcccccCcccHHHhhhCCC
Q 013056          263 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLS---ILDLSGN-SIGGWLSKYDRSGPLFSLGAGK  338 (450)
Q Consensus       263 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~---~L~Ls~n-~l~~~~~~~~~~~l~~~l~~~~  338 (450)
                           .....+..+++|++|++++|.+++ .+.      +..+++|+   +|++++| .+++..+           ..+.
T Consensus        96 -----i~~~~f~~l~~L~~L~l~~n~l~~-lp~------~~~l~~L~~L~~L~l~~N~~l~~i~~-----------~~~~  152 (239)
T 2xwt_C           96 -----IDPDALKELPLLKFLGIFNTGLKM-FPD------LTKVYSTDIFFILEITDNPYMTSIPV-----------NAFQ  152 (239)
T ss_dssp             -----ECTTSEECCTTCCEEEEEEECCCS-CCC------CTTCCBCCSEEEEEEESCTTCCEECT-----------TTTT
T ss_pred             -----cCHHHhCCCCCCCEEeCCCCCCcc-ccc------cccccccccccEEECCCCcchhhcCc-----------cccc
Confidence                 233456778899999999998876 332      24467777   9999999 7775333           2334


Q ss_pred             CCCcee-EEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCC-CChhhHHHHHHHHHhhcCCC-CCcCEEEccCCCCCh
Q 013056          339 SLQSLR-LLNLRGNNLCKADARDLGSALVHIPNLEILDISDNT-IEDDGIRSLIPYFVQASERC-NPLVELYLENCELSG  415 (450)
Q Consensus       339 ~l~~L~-~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-l~~~g~~~l~~~l~~~l~~~-~~L~~L~L~~n~l~~  415 (450)
                      .+++|+ .|++++|+++.     ++......++|++|++++|+ ++.      ++.  ..+..+ ++|++|++++|.|+.
T Consensus       153 ~l~~L~~~L~l~~n~l~~-----i~~~~~~~~~L~~L~L~~n~~l~~------i~~--~~~~~l~~~L~~L~l~~N~l~~  219 (239)
T 2xwt_C          153 GLCNETLTLKLYNNGFTS-----VQGYAFNGTKLDAVYLNKNKYLTV------IDK--DAFGGVYSGPSLLDVSQTSVTA  219 (239)
T ss_dssp             TTBSSEEEEECCSCCCCE-----ECTTTTTTCEEEEEECTTCTTCCE------ECT--TTTTTCSBCCSEEECTTCCCCC
T ss_pred             chhcceeEEEcCCCCCcc-----cCHhhcCCCCCCEEEcCCCCCccc------CCH--HHhhccccCCcEEECCCCcccc
Confidence            678899 99999998885     55544444789999999995 876      332  457777 899999999999887


Q ss_pred             hHHHHHHHHHhcCCCCCcEEECcCC
Q 013056          416 RGVSQLLDTLSTLRRPPTSLSIADN  440 (450)
Q Consensus       416 ~g~~~l~~~l~~l~~~L~~L~L~~N  440 (450)
                      .     +..  .+ .+|+.|+++++
T Consensus       220 l-----~~~--~~-~~L~~L~l~~~  236 (239)
T 2xwt_C          220 L-----PSK--GL-EHLKELIARNT  236 (239)
T ss_dssp             C-----CCT--TC-TTCSEEECTTC
T ss_pred             C-----Chh--Hh-ccCceeeccCc
Confidence            3     222  22 23889988876

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.65  E-value=7.3e-17  Score=152.62  Aligned_cols=169  Identities=20%  Similarity=0.250  Sum_probs=98.5

Q ss_pred             CCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChh
Q 013056          213 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD  292 (450)
Q Consensus       213 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  292 (450)
                      ++|+.|++++|.++...  .    +..    +++|++|++++|.+++.        . . +..+++|++|++++|.+++.
T Consensus        46 ~~L~~L~l~~~~i~~~~--~----~~~----l~~L~~L~L~~n~l~~~--------~-~-l~~l~~L~~L~l~~n~l~~~  105 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSVQ--G----IQY----LPNVTKLFLNGNKLTDI--------K-P-LANLKNLGWLFLDENKVKDL  105 (291)
T ss_dssp             HTCCEEECTTSCCCCCT--T----GGG----CTTCCEEECCSSCCCCC--------G-G-GTTCTTCCEEECCSSCCCCG
T ss_pred             CcccEEEccCCCcccCh--h----Hhc----CCCCCEEEccCCccCCC--------c-c-cccCCCCCEEECCCCcCCCC
Confidence            45667777776665431  1    111    46677777777766651        1 1 55666777777777766552


Q ss_pred             HHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCC
Q 013056          293 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLE  372 (450)
Q Consensus       293 ~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  372 (450)
                       +.      +..+++|++|++++|.+++.          ..+.   .+++|+.|++++|.+++     + ..+..+++|+
T Consensus       106 -~~------l~~l~~L~~L~L~~n~i~~~----------~~l~---~l~~L~~L~l~~n~l~~-----~-~~l~~l~~L~  159 (291)
T 1h6t_A          106 -SS------LKDLKKLKSLSLEHNGISDI----------NGLV---HLPQLESLYLGNNKITD-----I-TVLSRLTKLD  159 (291)
T ss_dssp             -GG------GTTCTTCCEEECTTSCCCCC----------GGGG---GCTTCCEEECCSSCCCC-----C-GGGGGCTTCS
T ss_pred             -hh------hccCCCCCEEECCCCcCCCC----------hhhc---CCCCCCEEEccCCcCCc-----c-hhhccCCCCC
Confidence             11      23456677777777766641          1222   44666777777776665     2 3466666777


Q ss_pred             EEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056          373 ILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  444 (450)
Q Consensus       373 ~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~  444 (450)
                      +|++++|++++      ++    .+..+++|++|++++|.|++.     + .+..+ .+|+.|++++|++++
T Consensus       160 ~L~L~~N~l~~------~~----~l~~l~~L~~L~L~~N~i~~l-----~-~l~~l-~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          160 TLSLEDNQISD------IV----PLAGLTKLQNLYLSKNHISDL-----R-ALAGL-KNLDVLELFSQECLN  214 (291)
T ss_dssp             EEECCSSCCCC------CG----GGTTCTTCCEEECCSSCCCBC-----G-GGTTC-TTCSEEEEEEEEEEC
T ss_pred             EEEccCCcccc------ch----hhcCCCccCEEECCCCcCCCC-----h-hhccC-CCCCEEECcCCcccC
Confidence            77777777665      22    145566677777777776662     2 24443 337777777666654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.65  E-value=2.9e-16  Score=139.65  Aligned_cols=151  Identities=15%  Similarity=0.180  Sum_probs=106.1

Q ss_pred             CCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccc
Q 013056          245 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK  324 (450)
Q Consensus       245 ~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~  324 (450)
                      .+|++|++++|.++.         ++ .+..+++|++|++++|.++...  .     +..+++|++|++++|.+++..+ 
T Consensus        44 ~~L~~L~l~~n~i~~---------l~-~l~~l~~L~~L~l~~n~~~~~~--~-----l~~l~~L~~L~l~~n~l~~~~~-  105 (197)
T 4ezg_A           44 NSLTYITLANINVTD---------LT-GIEYAHNIKDLTINNIHATNYN--P-----ISGLSNLERLRIMGKDVTSDKI-  105 (197)
T ss_dssp             HTCCEEEEESSCCSC---------CT-TGGGCTTCSEEEEESCCCSCCG--G-----GTTCTTCCEEEEECTTCBGGGS-
T ss_pred             CCccEEeccCCCccC---------hH-HHhcCCCCCEEEccCCCCCcch--h-----hhcCCCCCEEEeECCccCcccC-
Confidence            456666776666654         22 3566788888888888765521  1     2447888888888888876333 


Q ss_pred             cCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCC-CChhhHHHHHHHHHhhcCCCCCc
Q 013056          325 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNT-IEDDGIRSLIPYFVQASERCNPL  403 (450)
Q Consensus       325 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-l~~~g~~~l~~~l~~~l~~~~~L  403 (450)
                                ..+..+++|+.|++++|.+++.    .+..+..+++|++|++++|. +++      +|    .+..+++|
T Consensus       106 ----------~~l~~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~~i~~------~~----~l~~l~~L  161 (197)
T 4ezg_A          106 ----------PNLSGLTSLTLLDISHSAHDDS----ILTKINTLPKVNSIDLSYNGAITD------IM----PLKTLPEL  161 (197)
T ss_dssp             ----------CCCTTCTTCCEEECCSSBCBGG----GHHHHTTCSSCCEEECCSCTBCCC------CG----GGGGCSSC
T ss_pred             ----------hhhcCCCCCCEEEecCCccCcH----hHHHHhhCCCCCEEEccCCCCccc------cH----hhcCCCCC
Confidence                      3444678889999999988873    46667888899999999987 777      43    36667889


Q ss_pred             CEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056          404 VELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  444 (450)
Q Consensus       404 ~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~  444 (450)
                      ++|++++|.+++.     + .+..+. +|++|++++|+|++
T Consensus       162 ~~L~l~~n~i~~~-----~-~l~~l~-~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          162 KSLNIQFDGVHDY-----R-GIEDFP-KLNQLYAFSQTIGG  195 (197)
T ss_dssp             CEEECTTBCCCCC-----T-TGGGCS-SCCEEEECBC----
T ss_pred             CEEECCCCCCcCh-----H-HhccCC-CCCEEEeeCcccCC
Confidence            9999999988873     2 456643 48999999998875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.64  E-value=5e-17  Score=168.83  Aligned_cols=197  Identities=18%  Similarity=0.079  Sum_probs=136.2

Q ss_pred             cchhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056          162 HYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  241 (450)
Q Consensus       162 ~~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~  241 (450)
                      ..++.+++++|.+..++.   .+++|++|+|++|.+....        ..+++|+.|++++|.|+....           
T Consensus        61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp--------~~l~~L~~L~Ls~N~l~~l~~-----------  118 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLP--------VLPPGLLELSIFSNPLTHLPA-----------  118 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCC--------CCCTTCCEEEECSCCCCCCCC-----------
T ss_pred             CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCC--------CCCCCCCEEECcCCcCCCCCC-----------
Confidence            467778888888876665   5689999999999865422        266899999999998885221           


Q ss_pred             cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCc
Q 013056          242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW  321 (450)
Q Consensus       242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~  321 (450)
                       ...+|+.|++++|.++....            .+++|++|+|++|.+++ .+.        ...+|+.|++++|.+++.
T Consensus       119 -~l~~L~~L~L~~N~l~~lp~------------~l~~L~~L~Ls~N~l~~-l~~--------~~~~L~~L~L~~N~l~~l  176 (622)
T 3g06_A          119 -LPSGLCKLWIFGNQLTSLPV------------LPPGLQELSVSDNQLAS-LPA--------LPSELCKLWAYNNQLTSL  176 (622)
T ss_dssp             -CCTTCCEEECCSSCCSCCCC------------CCTTCCEEECCSSCCSC-CCC--------CCTTCCEEECCSSCCSCC
T ss_pred             -CCCCcCEEECCCCCCCcCCC------------CCCCCCEEECcCCcCCC-cCC--------ccCCCCEEECCCCCCCCC
Confidence             15889999999999887332            24899999999999876 221        257899999999998862


Q ss_pred             ccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHh-----------------hcCCCCCEEecCCCCCChh
Q 013056          322 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSAL-----------------VHIPNLEILDISDNTIEDD  384 (450)
Q Consensus       322 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l-----------------~~~~~L~~L~Ls~N~l~~~  384 (450)
                               |      ..+++|+.|++++|.|+.     +|..+                 ...++|++|+|++|.|+. 
T Consensus       177 ---------~------~~~~~L~~L~Ls~N~l~~-----l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-  235 (622)
T 3g06_A          177 ---------P------MLPSGLQELSVSDNQLAS-----LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-  235 (622)
T ss_dssp             ---------C------CCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-
T ss_pred             ---------c------ccCCCCcEEECCCCCCCC-----CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-
Confidence                     1      133566667777666664     22211                 112566777777776665 


Q ss_pred             hHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCC
Q 013056          385 GIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG  443 (450)
Q Consensus       385 g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~  443 (450)
                           +|      ..+++|++|+|++|.|+.     ++.   . ..+|++|+|++|.|+
T Consensus       236 -----lp------~~l~~L~~L~Ls~N~L~~-----lp~---~-~~~L~~L~Ls~N~L~  274 (622)
T 3g06_A          236 -----LP------VLPSELKELMVSGNRLTS-----LPM---L-PSGLLSLSVYRNQLT  274 (622)
T ss_dssp             -----CC------CCCTTCCEEECCSSCCSC-----CCC---C-CTTCCEEECCSSCCC
T ss_pred             -----CC------CCCCcCcEEECCCCCCCc-----CCc---c-cccCcEEeCCCCCCC
Confidence                 32      334677777777777775     333   2 344888888888777

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.62  E-value=1.8e-16  Score=140.90  Aligned_cols=130  Identities=21%  Similarity=0.275  Sum_probs=72.4

Q ss_pred             CCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccc
Q 013056          244 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS  323 (450)
Q Consensus       244 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~  323 (450)
                      +++|++|++++|.++..          ..+..+++|++|++++|.+++..+..+     ..+++|++|++++|.+++..+
T Consensus        65 l~~L~~L~l~~n~~~~~----------~~l~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~i~~~~~  129 (197)
T 4ezg_A           65 AHNIKDLTINNIHATNY----------NPISGLSNLERLRIMGKDVTSDKIPNL-----SGLTSLTLLDISHSAHDDSIL  129 (197)
T ss_dssp             CTTCSEEEEESCCCSCC----------GGGTTCTTCCEEEEECTTCBGGGSCCC-----TTCTTCCEEECCSSBCBGGGH
T ss_pred             CCCCCEEEccCCCCCcc----------hhhhcCCCCCEEEeECCccCcccChhh-----cCCCCCCEEEecCCccCcHhH
Confidence            34555555555544331          134456666666666666655444333     235666666666666664222


Q ss_pred             ccCcccHHHhhhCCCCCCceeEEEccCCC-CChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCC
Q 013056          324 KYDRSGPLFSLGAGKSLQSLRLLNLRGNN-LCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP  402 (450)
Q Consensus       324 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~  402 (450)
                              ..+.   .+++|+.|++++|. +++     ++ .+..+++|++|++++|.+++      +    ..+..+++
T Consensus       130 --------~~l~---~l~~L~~L~L~~n~~i~~-----~~-~l~~l~~L~~L~l~~n~i~~------~----~~l~~l~~  182 (197)
T 4ezg_A          130 --------TKIN---TLPKVNSIDLSYNGAITD-----IM-PLKTLPELKSLNIQFDGVHD------Y----RGIEDFPK  182 (197)
T ss_dssp             --------HHHT---TCSSCCEEECCSCTBCCC-----CG-GGGGCSSCCEEECTTBCCCC------C----TTGGGCSS
T ss_pred             --------HHHh---hCCCCCEEEccCCCCccc-----cH-hhcCCCCCCEEECCCCCCcC------h----HHhccCCC
Confidence                    3343   44666677777765 654     33 46667777777777777766      2    12455567


Q ss_pred             cCEEEccCCCCCh
Q 013056          403 LVELYLENCELSG  415 (450)
Q Consensus       403 L~~L~L~~n~l~~  415 (450)
                      |++|++++|+|+.
T Consensus       183 L~~L~l~~N~i~~  195 (197)
T 4ezg_A          183 LNQLYAFSQTIGG  195 (197)
T ss_dssp             CCEEEECBC----
T ss_pred             CCEEEeeCcccCC
Confidence            7777777776654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.62  E-value=1.6e-17  Score=152.38  Aligned_cols=184  Identities=14%  Similarity=0.136  Sum_probs=138.1

Q ss_pred             CCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCC-CCCCCchhhHHHHHHhhcCCCCCCEEecCC-CCCC
Q 013056          213 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS-FIENCPSSVVVELVSFLSSGRSLCSLKLRH-CHLD  290 (450)
Q Consensus       213 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~  290 (450)
                      ++|+.|++++|.|+......+..        +++|++|++++|. ++.        .....+.++++|++|++++ |.++
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~--------l~~L~~L~l~~n~~l~~--------i~~~~f~~l~~L~~L~l~~~n~l~   94 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSN--------LPNISRIYVSIDVTLQQ--------LESHSFYNLSKVTHIEIRNTRNLT   94 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTT--------CTTCCEEEEECCSSCCE--------ECTTTEESCTTCCEEEEEEETTCC
T ss_pred             CcccEEEEeCCcceEECHHHccC--------CCCCcEEeCCCCCCcce--------eCHhHcCCCcCCcEEECCCCCCee
Confidence            47999999999998655444433        6899999999997 776        2234678899999999998 9998


Q ss_pred             hhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCC-CCChhhHHHHHH-HhhcC
Q 013056          291 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN-NLCKADARDLGS-ALVHI  368 (450)
Q Consensus       291 ~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~-~l~~~  368 (450)
                      ...+..     +..+++|++|++++|.+++         +|. +..+..+..|+.|++++| .++.     ++. .+..+
T Consensus        95 ~i~~~~-----f~~l~~L~~L~l~~n~l~~---------lp~-~~~l~~L~~L~~L~l~~N~~l~~-----i~~~~~~~l  154 (239)
T 2xwt_C           95 YIDPDA-----LKELPLLKFLGIFNTGLKM---------FPD-LTKVYSTDIFFILEITDNPYMTS-----IPVNAFQGL  154 (239)
T ss_dssp             EECTTS-----EECCTTCCEEEEEEECCCS---------CCC-CTTCCBCCSEEEEEEESCTTCCE-----ECTTTTTTT
T ss_pred             EcCHHH-----hCCCCCCCEEeCCCCCCcc---------ccc-cccccccccccEEECCCCcchhh-----cCcccccch
Confidence            743332     3457999999999999986         223 343333333449999999 9987     443 57889


Q ss_pred             CCCC-EEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCC-CChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056          369 PNLE-ILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE-LSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF  445 (450)
Q Consensus       369 ~~L~-~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~  445 (450)
                      ++|+ +|++++|.++.      +|.  ..+.. ++|++|++++|+ ++..    -...+..+..+|++|++++|+|++.
T Consensus       155 ~~L~~~L~l~~n~l~~------i~~--~~~~~-~~L~~L~L~~n~~l~~i----~~~~~~~l~~~L~~L~l~~N~l~~l  220 (239)
T 2xwt_C          155 CNETLTLKLYNNGFTS------VQG--YAFNG-TKLDAVYLNKNKYLTVI----DKDAFGGVYSGPSLLDVSQTSVTAL  220 (239)
T ss_dssp             BSSEEEEECCSCCCCE------ECT--TTTTT-CEEEEEECTTCTTCCEE----CTTTTTTCSBCCSEEECTTCCCCCC
T ss_pred             hcceeEEEcCCCCCcc------cCH--hhcCC-CCCCEEEcCCCCCcccC----CHHHhhccccCCcEEECCCCccccC
Confidence            9999 99999999986      442  33444 799999999995 8873    2334555314599999999999864

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.61  E-value=1.7e-16  Score=163.05  Aligned_cols=183  Identities=19%  Similarity=0.158  Sum_probs=130.8

Q ss_pred             chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056          163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  242 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~  242 (450)
                      .++.++++++.+..++..++  ++|+.|+|++|.+....        ..+++|+.|++++|.|+.. +. +         
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip--------~~l~~L~~L~Ls~N~l~~i-p~-l---------  118 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP--------ELPASLEYLDACDNRLSTL-PE-L---------  118 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCC-CC-C---------
T ss_pred             CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc--------cccCCCCEEEccCCCCCCc-ch-h---------
Confidence            45566666776666555443  78999999999866322        3467899999999988852 11 1         


Q ss_pred             CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056          243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  322 (450)
Q Consensus       243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  322 (450)
                       ..+|++|++++|.++...         .   .+++|++|+|++|.+++ .+.        .+++|++|+|++|.+++ +
T Consensus       119 -~~~L~~L~Ls~N~l~~lp---------~---~l~~L~~L~Ls~N~l~~-lp~--------~l~~L~~L~Ls~N~L~~-l  175 (571)
T 3cvr_A          119 -PASLKHLDVDNNQLTMLP---------E---LPALLEYINADNNQLTM-LPE--------LPTSLEVLSVRNNQLTF-L  175 (571)
T ss_dssp             -CTTCCEEECCSSCCSCCC---------C---CCTTCCEEECCSSCCSC-CCC--------CCTTCCEEECCSSCCSC-C
T ss_pred             -hcCCCEEECCCCcCCCCC---------C---cCccccEEeCCCCccCc-CCC--------cCCCcCEEECCCCCCCC-c
Confidence             237899999999887722         1   46889999999998876 332        25789999999998886 2


Q ss_pred             cccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCC-------CEEecCCCCCChhhHHHHHHHHHh
Q 013056          323 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNL-------EILDISDNTIEDDGIRSLIPYFVQ  395 (450)
Q Consensus       323 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L-------~~L~Ls~N~l~~~g~~~l~~~l~~  395 (450)
                      |        . +.     ++|+.|+|++|+|+.     +|. +..  +|       +.|+|++|.|+.      +|   .
T Consensus       176 p--------~-l~-----~~L~~L~Ls~N~L~~-----lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~------lp---~  224 (571)
T 3cvr_A          176 P--------E-LP-----ESLEALDVSTNLLES-----LPA-VPV--RNHHSEETEIFFRCRENRITH------IP---E  224 (571)
T ss_dssp             C--------C-CC-----TTCCEEECCSSCCSS-----CCC-CC----------CCEEEECCSSCCCC------CC---G
T ss_pred             c--------h-hh-----CCCCEEECcCCCCCc-----hhh-HHH--hhhcccccceEEecCCCccee------cC---H
Confidence            2        3 22     788999999998885     555 333  56       999999999886      55   4


Q ss_pred             hcCCCCCcCEEEccCCCCChhHHHH
Q 013056          396 ASERCNPLVELYLENCELSGRGVSQ  420 (450)
Q Consensus       396 ~l~~~~~L~~L~L~~n~l~~~g~~~  420 (450)
                      .+..+++|+.|+|++|.|+......
T Consensus       225 ~l~~l~~L~~L~L~~N~l~~~~p~~  249 (571)
T 3cvr_A          225 NILSLDPTCTIILEDNPLSSRIRES  249 (571)
T ss_dssp             GGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred             HHhcCCCCCEEEeeCCcCCCcCHHH
Confidence            4555789999999999998864333

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.60  E-value=3.3e-16  Score=145.81  Aligned_cols=148  Identities=19%  Similarity=0.214  Sum_probs=78.0

Q ss_pred             cCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCC
Q 013056          211 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD  290 (450)
Q Consensus       211 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  290 (450)
                      .+++|+.|++++|.|+...  .+    ..    +++|++|++++|.+++.         +. +..+++|++|+|++|+++
T Consensus        39 ~l~~L~~L~l~~n~i~~l~--~l----~~----l~~L~~L~L~~N~i~~~---------~~-l~~l~~L~~L~L~~N~l~   98 (263)
T 1xeu_A           39 ELSGVQNFNGDNSNIQSLA--GM----QF----FTNLKELHLSHNQISDL---------SP-LKDLTKLEELSVNRNRLK   98 (263)
T ss_dssp             HHTTCSEEECTTSCCCCCT--TG----GG----CTTCCEEECCSSCCCCC---------GG-GTTCSSCCEEECCSSCCS
T ss_pred             hcCcCcEEECcCCCcccch--HH----hh----CCCCCEEECCCCccCCC---------hh-hccCCCCCEEECCCCccC
Confidence            4456666666666665321  11    11    45566666666666551         11 455666666666666655


Q ss_pred             hhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCC
Q 013056          291 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN  370 (450)
Q Consensus       291 ~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~  370 (450)
                      +. +. +     .. ++|++|++++|.+++.          ..+.   .+++|+.|++++|+|++     ++ .+..+++
T Consensus        99 ~l-~~-~-----~~-~~L~~L~L~~N~l~~~----------~~l~---~l~~L~~L~Ls~N~i~~-----~~-~l~~l~~  151 (263)
T 1xeu_A           99 NL-NG-I-----PS-ACLSRLFLDNNELRDT----------DSLI---HLKNLEILSIRNNKLKS-----IV-MLGFLSK  151 (263)
T ss_dssp             CC-TT-C-----CC-SSCCEEECCSSCCSBS----------GGGT---TCTTCCEEECTTSCCCB-----CG-GGGGCTT
T ss_pred             Cc-Cc-c-----cc-CcccEEEccCCccCCC----------hhhc---CcccccEEECCCCcCCC-----Ch-HHccCCC
Confidence            41 11 0     11 5566666666665541          1122   44566666666666654     22 3555666


Q ss_pred             CCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056          371 LEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  415 (450)
Q Consensus       371 L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  415 (450)
                      |++|++++|+|++.          ..+..+++|+.|++++|.++.
T Consensus       152 L~~L~L~~N~i~~~----------~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          152 LEVLDLHGNEITNT----------GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             CCEEECTTSCCCBC----------TTSTTCCCCCEEEEEEEEEEC
T ss_pred             CCEEECCCCcCcch----------HHhccCCCCCEEeCCCCcccC
Confidence            66666666666552          234555666666666665544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.60  E-value=1.5e-16  Score=142.76  Aligned_cols=156  Identities=20%  Similarity=0.174  Sum_probs=92.9

Q ss_pred             CCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccc
Q 013056          245 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK  324 (450)
Q Consensus       245 ~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~  324 (450)
                      .+|++|++++|.++.        .....+..+++|++|++++|++++..+..     +..+++|++|++++|.+++..+ 
T Consensus        28 ~~l~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~-   93 (208)
T 2o6s_A           28 AQTTYLDLETNSLKS--------LPNGVFDELTSLTQLYLGGNKLQSLPNGV-----FNKLTSLTYLNLSTNQLQSLPN-   93 (208)
T ss_dssp             TTCSEEECCSSCCCC--------CCTTTTTTCTTCSEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCT-
T ss_pred             CCCcEEEcCCCccCc--------CChhhhcccccCcEEECCCCccCccChhh-----cCCCCCcCEEECCCCcCCccCH-
Confidence            456666666666655        22233456677777777777766532211     2345677777777777665322 


Q ss_pred             cCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcC
Q 013056          325 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV  404 (450)
Q Consensus       325 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~  404 (450)
                                ..+..+++|+.|++++|.|+.    ..+..+..+++|++|+|++|.+++      ++.  ..+..+++|+
T Consensus        94 ----------~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~------~~~--~~~~~l~~L~  151 (208)
T 2o6s_A           94 ----------GVFDKLTQLKELALNTNQLQS----LPDGVFDKLTQLKDLRLYQNQLKS------VPD--GVFDRLTSLQ  151 (208)
T ss_dssp             ----------TTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTCC
T ss_pred             ----------hHhcCccCCCEEEcCCCcCcc----cCHhHhccCCcCCEEECCCCccce------eCH--HHhccCCCcc
Confidence                      122355677777777777765    122335667777777777777765      221  3356667777


Q ss_pred             EEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCccccc
Q 013056          405 ELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCAN  448 (450)
Q Consensus       405 ~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~~  448 (450)
                      +|++++|.++..            ...|+.|+++.|.+++.+|.
T Consensus       152 ~L~l~~N~~~~~------------~~~l~~L~~~~n~~~g~ip~  183 (208)
T 2o6s_A          152 YIWLHDNPWDCT------------CPGIRYLSEWINKHSGVVRN  183 (208)
T ss_dssp             EEECCSCCBCCC------------TTTTHHHHHHHHHCTTTBBC
T ss_pred             EEEecCCCeecC------------CCCHHHHHHHHHhCCceeec
Confidence            777777766542            12366667777777666653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.60  E-value=7.2e-16  Score=154.96  Aligned_cols=54  Identities=15%  Similarity=0.070  Sum_probs=23.4

Q ss_pred             hhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCC
Q 013056          164 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLS  226 (450)
Q Consensus       164 l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  226 (450)
                      ++.+++++|.+..++..   ..+|++|++++|.+... +.     +.++++|+.|++++|.++
T Consensus       155 L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~l-~~-----~~~l~~L~~L~l~~N~l~  208 (454)
T 1jl5_A          155 LKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEEL-PE-----LQNLPFLTAIYADNNSLK  208 (454)
T ss_dssp             CCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSC-CC-----CTTCTTCCEEECCSSCCS
T ss_pred             CCEEECCCCcCcccCCC---cccccEEECcCCcCCcC-cc-----ccCCCCCCEEECCCCcCC
Confidence            34444555444432221   13455555555543331 11     234455555555555444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.60  E-value=6.4e-16  Score=160.26  Aligned_cols=171  Identities=22%  Similarity=0.190  Sum_probs=106.6

Q ss_pred             cCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCc
Q 013056          183 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP  262 (450)
Q Consensus       183 ~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~  262 (450)
                      .+++|+.|++++|.+.... .     +..+++|+.|+|++|.|++..+  +.    .    +++|+.|+|++|.+...  
T Consensus        41 ~L~~L~~L~l~~n~i~~l~-~-----l~~l~~L~~L~Ls~N~l~~~~~--l~----~----l~~L~~L~Ls~N~l~~l--  102 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSVQ-G-----IQYLPNVTKLFLNGNKLTDIKP--LT----N----LKNLGWLFLDENKIKDL--  102 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCCT-T-----GGGCTTCCEEECTTSCCCCCGG--GG----G----CTTCCEEECCSSCCCCC--
T ss_pred             cCCCCCEEECcCCCCCCCh-H-----HccCCCCCEEEeeCCCCCCChh--hc----c----CCCCCEEECcCCCCCCC--
Confidence            4466667777766644321 1     4566777777777777665433  11    1    56777777777776651  


Q ss_pred             hhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCc
Q 013056          263 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS  342 (450)
Q Consensus       263 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~  342 (450)
                              ..+..+++|++|+|++|.+.+. + .     +..+++|+.|+|++|.+.+.          ..+.   .+++
T Consensus       103 --------~~l~~l~~L~~L~Ls~N~l~~l-~-~-----l~~l~~L~~L~Ls~N~l~~l----------~~l~---~l~~  154 (605)
T 1m9s_A          103 --------SSLKDLKKLKSLSLEHNGISDI-N-G-----LVHLPQLESLYLGNNKITDI----------TVLS---RLTK  154 (605)
T ss_dssp             --------TTSTTCTTCCEEECTTSCCCCC-G-G-----GGGCTTCSEEECCSSCCCCC----------GGGG---SCTT
T ss_pred             --------hhhccCCCCCEEEecCCCCCCC-c-c-----ccCCCccCEEECCCCccCCc----------hhhc---ccCC
Confidence                    1355677777777777777652 1 1     23467777777777777652          1223   4567


Q ss_pred             eeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056          343 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  415 (450)
Q Consensus       343 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  415 (450)
                      |+.|+|++|.|++     ++. +..+++|+.|+|++|+|++      +    ..+..+++|+.|+|++|.++.
T Consensus       155 L~~L~Ls~N~l~~-----~~~-l~~l~~L~~L~Ls~N~i~~------l----~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          155 LDTLSLEDNQISD-----IVP-LAGLTKLQNLYLSKNHISD------L----RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CSEEECCSSCCCC-----CGG-GTTCTTCCEEECCSSCCCB------C----GGGTTCTTCSEEECCSEEEEC
T ss_pred             CCEEECcCCcCCC-----chh-hccCCCCCEEECcCCCCCC------C----hHHccCCCCCEEEccCCcCcC
Confidence            7777777777765     222 6677777777777777766      3    235666777777777776655

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.59  E-value=5.7e-16  Score=160.63  Aligned_cols=172  Identities=20%  Similarity=0.237  Sum_probs=139.7

Q ss_pred             cCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCC
Q 013056          211 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD  290 (450)
Q Consensus       211 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  290 (450)
                      .+++|+.|++++|.|....  .    +..    +++|+.|+|++|.+++.        .+  +..+++|++|+|++|.+.
T Consensus        41 ~L~~L~~L~l~~n~i~~l~--~----l~~----l~~L~~L~Ls~N~l~~~--------~~--l~~l~~L~~L~Ls~N~l~  100 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSVQ--G----IQY----LPNVTKLFLNGNKLTDI--------KP--LTNLKNLGWLFLDENKIK  100 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCCT--T----GGG----CTTCCEEECTTSCCCCC--------GG--GGGCTTCCEEECCSSCCC
T ss_pred             cCCCCCEEECcCCCCCCCh--H----Hcc----CCCCCEEEeeCCCCCCC--------hh--hccCCCCCEEECcCCCCC
Confidence            4578999999999988642  1    222    69999999999999882        22  788999999999999998


Q ss_pred             hhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCC
Q 013056          291 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN  370 (450)
Q Consensus       291 ~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~  370 (450)
                      +. + .     +..+++|++|+|++|.+.+.          ..+.   .+++|+.|+|++|.|+.     + ..+..+++
T Consensus       101 ~l-~-~-----l~~l~~L~~L~Ls~N~l~~l----------~~l~---~l~~L~~L~Ls~N~l~~-----l-~~l~~l~~  154 (605)
T 1m9s_A          101 DL-S-S-----LKDLKKLKSLSLEHNGISDI----------NGLV---HLPQLESLYLGNNKITD-----I-TVLSRLTK  154 (605)
T ss_dssp             CC-T-T-----STTCTTCCEEECTTSCCCCC----------GGGG---GCTTCSEEECCSSCCCC-----C-GGGGSCTT
T ss_pred             CC-h-h-----hccCCCCCEEEecCCCCCCC----------cccc---CCCccCEEECCCCccCC-----c-hhhcccCC
Confidence            72 2 2     35589999999999999862          2234   66899999999999997     3 56889999


Q ss_pred             CCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056          371 LEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF  445 (450)
Q Consensus       371 L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~  445 (450)
                      |+.|+|++|.|++      ++    .+..+++|+.|+|++|.|++.      ..+..+ .+|+.|+|++|++.+.
T Consensus       155 L~~L~Ls~N~l~~------~~----~l~~l~~L~~L~Ls~N~i~~l------~~l~~l-~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          155 LDTLSLEDNQISD------IV----PLAGLTKLQNLYLSKNHISDL------RALAGL-KNLDVLELFSQECLNK  212 (605)
T ss_dssp             CSEEECCSSCCCC------CG----GGTTCTTCCEEECCSSCCCBC------GGGTTC-TTCSEEECCSEEEECC
T ss_pred             CCEEECcCCcCCC------ch----hhccCCCCCEEECcCCCCCCC------hHHccC-CCCCEEEccCCcCcCC
Confidence            9999999999988      32    277889999999999999983      246664 4499999999998775

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.58  E-value=6.9e-16  Score=155.09  Aligned_cols=200  Identities=17%  Similarity=0.111  Sum_probs=139.4

Q ss_pred             chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056          163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  242 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~  242 (450)
                      .++.++++++.+..++..   .++|++|++++|.+....        ...++|++|++++|.++.. + .+..       
T Consensus        92 ~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~--------~~~~~L~~L~L~~n~l~~l-p-~~~~-------  151 (454)
T 1jl5_A           92 HLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALS--------DLPPLLEYLGVSNNQLEKL-P-ELQN-------  151 (454)
T ss_dssp             TCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC--------SCCTTCCEEECCSSCCSSC-C-CCTT-------
T ss_pred             CCCEEEccCCcCCccccc---cCCCcEEECCCCccCccc--------CCCCCCCEEECcCCCCCCC-c-ccCC-------
Confidence            566777777777665432   378888888888754321        1125788888888888752 1 2221       


Q ss_pred             CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056          243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  322 (450)
Q Consensus       243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  322 (450)
                       +.+|++|++++|.+++...            ..++|++|++++|.+++ .+ .     +..+++|++|++++|.+++. 
T Consensus       152 -l~~L~~L~l~~N~l~~lp~------------~~~~L~~L~L~~n~l~~-l~-~-----~~~l~~L~~L~l~~N~l~~l-  210 (454)
T 1jl5_A          152 -SSFLKIIDVDNNSLKKLPD------------LPPSLEFIAAGNNQLEE-LP-E-----LQNLPFLTAIYADNNSLKKL-  210 (454)
T ss_dssp             -CTTCCEEECCSSCCSCCCC------------CCTTCCEEECCSSCCSS-CC-C-----CTTCTTCCEEECCSSCCSSC-
T ss_pred             -CCCCCEEECCCCcCcccCC------------CcccccEEECcCCcCCc-Cc-c-----ccCCCCCCEEECCCCcCCcC-
Confidence             6788888888888876321            12588888888888876 33 2     24578888888888888751 


Q ss_pred             cccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCC
Q 013056          323 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP  402 (450)
Q Consensus       323 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~  402 (450)
                      +        .      ..++|+.|++++|.++.     +| .+..+++|++|++++|+++.      +|   .   ..++
T Consensus       211 ~--------~------~~~~L~~L~l~~n~l~~-----lp-~~~~l~~L~~L~l~~N~l~~------l~---~---~~~~  258 (454)
T 1jl5_A          211 P--------D------LPLSLESIVAGNNILEE-----LP-ELQNLPFLTTIYADNNLLKT------LP---D---LPPS  258 (454)
T ss_dssp             C--------C------CCTTCCEEECCSSCCSS-----CC-CCTTCTTCCEEECCSSCCSS------CC---S---CCTT
T ss_pred             C--------C------CcCcccEEECcCCcCCc-----cc-ccCCCCCCCEEECCCCcCCc------cc---c---cccc
Confidence            1        1      12578999999998885     56 37888999999999999876      43   1   2378


Q ss_pred             cCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056          403 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  444 (450)
Q Consensus       403 L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~  444 (450)
                      |++|++++|.++.     ++..    ..+|++|++++|.+++
T Consensus       259 L~~L~l~~N~l~~-----l~~~----~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          259 LEALNVRDNYLTD-----LPEL----PQSLTFLDVSENIFSG  291 (454)
T ss_dssp             CCEEECCSSCCSC-----CCCC----CTTCCEEECCSSCCSE
T ss_pred             cCEEECCCCcccc-----cCcc----cCcCCEEECcCCccCc
Confidence            8999999998876     2221    2348888888888876

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.57  E-value=8.1e-16  Score=157.94  Aligned_cols=35  Identities=11%  Similarity=0.261  Sum_probs=17.3

Q ss_pred             eEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCCh
Q 013056          344 RLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED  383 (450)
Q Consensus       344 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~  383 (450)
                      +.|+|++|.|+.     +|..+..+++|+.|+|++|.++.
T Consensus       210 ~~L~Ls~N~l~~-----lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          210 IFFRCRENRITH-----IPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             EEEECCSSCCCC-----CCGGGGGSCTTEEEECCSSSCCH
T ss_pred             eEEecCCCccee-----cCHHHhcCCCCCEEEeeCCcCCC
Confidence            555555555543     44444445555555555555544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.55  E-value=3.2e-15  Score=136.15  Aligned_cols=146  Identities=20%  Similarity=0.193  Sum_probs=108.9

Q ss_pred             CCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccc
Q 013056          245 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK  324 (450)
Q Consensus       245 ~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~  324 (450)
                      .+|++|++++|.++.        ..+..+..+++|++|+|++|.++...+..     +..+++|++|+|++|.+++..+ 
T Consensus        40 ~~L~~L~Ls~n~i~~--------~~~~~~~~l~~L~~L~L~~N~l~~i~~~~-----~~~l~~L~~L~Ls~N~l~~l~~-  105 (229)
T 3e6j_A           40 TNAQILYLHDNQITK--------LEPGVFDSLINLKELYLGSNQLGALPVGV-----FDSLTQLTVLDLGTNQLTVLPS-  105 (229)
T ss_dssp             TTCSEEECCSSCCCC--------CCTTTTTTCTTCCEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCT-
T ss_pred             CCCCEEEcCCCccCc--------cCHHHhhCccCCcEEECCCCCCCCcChhh-----cccCCCcCEEECCCCcCCccCh-
Confidence            567777777777776        33455677889999999999886633222     2457899999999999886433 


Q ss_pred             cCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcC
Q 013056          325 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV  404 (450)
Q Consensus       325 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~  404 (450)
                                ..+..+++|+.|+|++|+|+.     +|..+..+++|++|+|++|+|+.      ++.  ..+..+++|+
T Consensus       106 ----------~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~  162 (229)
T 3e6j_A          106 ----------AVFDRLVHLKELFMCCNKLTE-----LPRGIERLTHLTHLALDQNQLKS------IPH--GAFDRLSSLT  162 (229)
T ss_dssp             ----------TTTTTCTTCCEEECCSSCCCS-----CCTTGGGCTTCSEEECCSSCCCC------CCT--TTTTTCTTCC
T ss_pred             ----------hHhCcchhhCeEeccCCcccc-----cCcccccCCCCCEEECCCCcCCc------cCH--HHHhCCCCCC
Confidence                      223467899999999999985     78888899999999999999986      332  4577889999


Q ss_pred             EEEccCCCCChh--HHHHHHHHHhc
Q 013056          405 ELYLENCELSGR--GVSQLLDTLST  427 (450)
Q Consensus       405 ~L~L~~n~l~~~--g~~~l~~~l~~  427 (450)
                      .|+|++|.++..  .+..+...+..
T Consensus       163 ~L~l~~N~~~c~c~~~~~l~~~~~~  187 (229)
T 3e6j_A          163 HAYLFGNPWDCECRDIMYLRNWVAD  187 (229)
T ss_dssp             EEECTTSCBCTTBGGGHHHHHHHHH
T ss_pred             EEEeeCCCccCCcchhHHHHHHHHh
Confidence            999999998754  24445555554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.55  E-value=9.8e-16  Score=149.45  Aligned_cols=177  Identities=21%  Similarity=0.166  Sum_probs=104.5

Q ss_pred             cEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHH
Q 013056          188 QSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVV  267 (450)
Q Consensus       188 ~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~  267 (450)
                      +.++++++.+......       -.+.++.|+|++|.|+......+.       ..+.+|++|+|++|.++.        
T Consensus        21 ~~l~c~~~~l~~iP~~-------~~~~l~~L~Ls~N~l~~l~~~~~~-------~~l~~L~~L~L~~N~i~~--------   78 (361)
T 2xot_A           21 NILSCSKQQLPNVPQS-------LPSYTALLDLSHNNLSRLRAEWTP-------TRLTNLHSLLLSHNHLNF--------   78 (361)
T ss_dssp             TEEECCSSCCSSCCSS-------CCTTCSEEECCSSCCCEECTTSSS-------SCCTTCCEEECCSSCCCE--------
T ss_pred             CEEEeCCCCcCccCcc-------CCCCCCEEECCCCCCCccChhhhh-------hcccccCEEECCCCcCCc--------
Confidence            5677777775543221       124577888888877754332221       015677777777777766        


Q ss_pred             HHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEE
Q 013056          268 ELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLN  347 (450)
Q Consensus       268 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~  347 (450)
                      ..+..+..+++|++|+|++|+++...+..     +..+++|++|+|++|.+.+..+           ..+..+++|+.|+
T Consensus        79 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----~~~l~~L~~L~L~~N~i~~~~~-----------~~~~~l~~L~~L~  142 (361)
T 2xot_A           79 ISSEAFVPVPNLRYLDLSSNHLHTLDEFL-----FSDLQALEVLLLYNNHIVVVDR-----------NAFEDMAQLQKLY  142 (361)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTT-----TTTCTTCCEEECCSSCCCEECT-----------TTTTTCTTCCEEE
T ss_pred             cChhhccCCCCCCEEECCCCcCCcCCHHH-----hCCCcCCCEEECCCCcccEECH-----------HHhCCcccCCEEE
Confidence            22334566777777777777776532222     2346777777777777765333           2233557777777


Q ss_pred             ccCCCCChhhHHHHHHHh----hcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCC--cCEEEccCCCCCh
Q 013056          348 LRGNNLCKADARDLGSAL----VHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP--LVELYLENCELSG  415 (450)
Q Consensus       348 L~~n~l~~~~~~~l~~~l----~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~--L~~L~L~~n~l~~  415 (450)
                      |++|.|+.     ++..+    ..+++|+.|+|++|+|+.-...        .+..++.  ++.|+|++|.+..
T Consensus       143 L~~N~l~~-----l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~--------~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          143 LSQNQISR-----FPVELIKDGNKLPKLMLLDLSSNKLKKLPLT--------DLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CCSSCCCS-----CCGGGTC----CTTCCEEECCSSCCCCCCHH--------HHHHSCHHHHTTEECCSSCEEC
T ss_pred             CCCCcCCe-----eCHHHhcCcccCCcCCEEECCCCCCCccCHH--------HhhhccHhhcceEEecCCCccC
Confidence            77777775     44333    4567777777777777652211        2222233  3667777777654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.54  E-value=5.6e-15  Score=133.67  Aligned_cols=155  Identities=16%  Similarity=0.169  Sum_probs=109.9

Q ss_pred             ccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHH
Q 013056          215 LASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFG  294 (450)
Q Consensus       215 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  294 (450)
                      -+.+++++|.++...     ..+      ...+++|++++|.++....       ...+..+++|++|+|++|.+++..+
T Consensus        13 ~~~l~~s~n~l~~iP-----~~~------~~~~~~L~L~~N~l~~~~~-------~~~~~~l~~L~~L~L~~N~i~~i~~   74 (220)
T 2v70_A           13 GTTVDCSNQKLNKIP-----EHI------PQYTAELRLNNNEFTVLEA-------TGIFKKLPQLRKINFSNNKITDIEE   74 (220)
T ss_dssp             TTEEECCSSCCSSCC-----SCC------CTTCSEEECCSSCCCEECC-------CCCGGGCTTCCEEECCSSCCCEECT
T ss_pred             CCEeEeCCCCcccCc-----cCC------CCCCCEEEcCCCcCCccCc-------hhhhccCCCCCEEECCCCcCCEECH
Confidence            357888888877411     111      3567888888888877211       1235678888888888888877443


Q ss_pred             HHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEE
Q 013056          295 RMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEIL  374 (450)
Q Consensus       295 ~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  374 (450)
                      ..+     ..+++|++|+|++|.+++..+        ..+.   .+++|++|+|++|.|+.    ..+..+..+++|++|
T Consensus        75 ~~~-----~~l~~L~~L~Ls~N~l~~~~~--------~~~~---~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L  134 (220)
T 2v70_A           75 GAF-----EGASGVNEILLTSNRLENVQH--------KMFK---GLESLKTLMLRSNRITC----VGNDSFIGLSSVRLL  134 (220)
T ss_dssp             TTT-----TTCTTCCEEECCSSCCCCCCG--------GGGT---TCSSCCEEECTTSCCCC----BCTTSSTTCTTCSEE
T ss_pred             HHh-----CCCCCCCEEECCCCccCccCH--------hHhc---CCcCCCEEECCCCcCCe----ECHhHcCCCccCCEE
Confidence            333     457888888888888886444        3343   56888888888888886    235667788888888


Q ss_pred             ecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056          375 DISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  415 (450)
Q Consensus       375 ~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  415 (450)
                      +|++|+|+..     .|   ..+..+++|++|+|++|.++.
T Consensus       135 ~L~~N~l~~~-----~~---~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          135 SLYDNQITTV-----AP---GAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             ECTTSCCCCB-----CT---TTTTTCTTCCEEECCSCCEEC
T ss_pred             ECCCCcCCEE-----CH---HHhcCCCCCCEEEecCcCCcC
Confidence            8888888762     23   567777888888888888764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=99.54  E-value=1.3e-13  Score=120.66  Aligned_cols=137  Identities=13%  Similarity=0.202  Sum_probs=87.1

Q ss_pred             HHHHHHHHHhcCCCccEEEccCC-CCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCC
Q 013056          201 VQALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSL  279 (450)
Q Consensus       201 ~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L  279 (450)
                      +...+..+..+-+.|++|+|++| .|.+.+...++++|+.                                    .+.|
T Consensus        29 v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~------------------------------------N~~L   72 (197)
T 1pgv_A           29 VESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACN------------------------------------SKHI   72 (197)
T ss_dssp             HHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTT------------------------------------CSCC
T ss_pred             HHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhh------------------------------------CCCc
Confidence            34445555667788888998885 8888888887776553                                    4667


Q ss_pred             CEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHH
Q 013056          280 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADAR  359 (450)
Q Consensus       280 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~  359 (450)
                      ++|+|++|.|++.+...++++|..+                                    +.|++|+|+.|.|+++|+.
T Consensus        73 ~~L~L~~n~igd~ga~alA~aL~~N------------------------------------~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           73 EKFSLANTAISDSEARGLIELIETS------------------------------------PSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             CEEECTTSCCBHHHHTTHHHHHHHC------------------------------------SSCCEEECCSSBCCHHHHH
T ss_pred             CEEEccCCCCChHHHHHHHHHHhcC------------------------------------CccCeEecCCCcCCHHHHH
Confidence            7777777777777777776665443                                    3345555555555556666


Q ss_pred             HHHHHhhcCCCCCEEecCCC---CCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCC
Q 013056          360 DLGSALVHIPNLEILDISDN---TIEDDGIRSLIPYFVQASERCNPLVELYLENCEL  413 (450)
Q Consensus       360 ~l~~~l~~~~~L~~L~Ls~N---~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l  413 (450)
                      .|.+++..++.|++|+|++|   .+++.|..+++    +++...+.|..|+++.|.+
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia----~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM----MAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH----HHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHH----HHHHhCCCcCeEeccCCCc
Confidence            66666666666666666543   45666665555    3344456666666665543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.54  E-value=7e-16  Score=143.62  Aligned_cols=165  Identities=19%  Similarity=0.232  Sum_probs=97.1

Q ss_pred             hhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCC
Q 013056          165 RCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRI  244 (450)
Q Consensus       165 ~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~  244 (450)
                      ..+++..+.+..++ .+..+++|+.|++++|.+.... .     +..+++|+.|++++|.|++...  +..        +
T Consensus        22 ~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~-----l~~l~~L~~L~L~~N~i~~~~~--l~~--------l   84 (263)
T 1xeu_A           22 VKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-G-----MQFFTNLKELHLSHNQISDLSP--LKD--------L   84 (263)
T ss_dssp             HHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-T-----GGGCTTCCEEECCSSCCCCCGG--GTT--------C
T ss_pred             HHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-H-----HhhCCCCCEEECCCCccCCChh--hcc--------C
Confidence            34455555555444 3455667777777777644322 1     4456677777777777665433  111        5


Q ss_pred             CCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccc
Q 013056          245 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK  324 (450)
Q Consensus       245 ~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~  324 (450)
                      ++|++|++++|.+++...          +.. ++|++|++++|.+++. + .     +..+++|++|++++|.+++.   
T Consensus        85 ~~L~~L~L~~N~l~~l~~----------~~~-~~L~~L~L~~N~l~~~-~-~-----l~~l~~L~~L~Ls~N~i~~~---  143 (263)
T 1xeu_A           85 TKLEELSVNRNRLKNLNG----------IPS-ACLSRLFLDNNELRDT-D-S-----LIHLKNLEILSIRNNKLKSI---  143 (263)
T ss_dssp             SSCCEEECCSSCCSCCTT----------CCC-SSCCEEECCSSCCSBS-G-G-----GTTCTTCCEEECTTSCCCBC---
T ss_pred             CCCCEEECCCCccCCcCc----------ccc-CcccEEEccCCccCCC-h-h-----hcCcccccEEECCCCcCCCC---
Confidence            667777777777665221          112 6677777777776652 1 1     23466777777777776651   


Q ss_pred             cCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCCh
Q 013056          325 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED  383 (450)
Q Consensus       325 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~  383 (450)
                            + .+.   .+++|+.|+|++|.|++     + ..+..+++|+.|++++|.++.
T Consensus       144 ------~-~l~---~l~~L~~L~L~~N~i~~-----~-~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          144 ------V-MLG---FLSKLEVLDLHGNEITN-----T-GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             ------G-GGG---GCTTCCEEECTTSCCCB-----C-TTSTTCCCCCEEEEEEEEEEC
T ss_pred             ------h-HHc---cCCCCCEEECCCCcCcc-----h-HHhccCCCCCEEeCCCCcccC
Confidence                  1 223   44667777777777765     2 446666777777777776654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.53  E-value=3.6e-15  Score=135.81  Aligned_cols=158  Identities=18%  Similarity=0.154  Sum_probs=121.8

Q ss_pred             CCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccc
Q 013056          245 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK  324 (450)
Q Consensus       245 ~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~  324 (450)
                      +..+.++.+++.++....         .  -.++|++|+|++|.+++..+..+     ..+++|++|+|++|.++...+ 
T Consensus        19 Cs~~~v~c~~~~l~~ip~---------~--~~~~L~~L~Ls~n~i~~~~~~~~-----~~l~~L~~L~L~~N~l~~i~~-   81 (229)
T 3e6j_A           19 CSGTTVDCRSKRHASVPA---------G--IPTNAQILYLHDNQITKLEPGVF-----DSLINLKELYLGSNQLGALPV-   81 (229)
T ss_dssp             EETTEEECTTSCCSSCCS---------C--CCTTCSEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSSCCCCCCT-
T ss_pred             EeCCEeEccCCCcCccCC---------C--CCCCCCEEEcCCCccCccCHHHh-----hCccCCcEEECCCCCCCCcCh-
Confidence            445677888887776332         1  13789999999999988555433     457999999999999986433 


Q ss_pred             cCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcC
Q 013056          325 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV  404 (450)
Q Consensus       325 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~  404 (450)
                                ..+..+++|+.|+|++|+|+.    ..+..+..+++|++|+|++|+|+.      +|   ..+..+++|+
T Consensus        82 ----------~~~~~l~~L~~L~Ls~N~l~~----l~~~~~~~l~~L~~L~Ls~N~l~~------lp---~~~~~l~~L~  138 (229)
T 3e6j_A           82 ----------GVFDSLTQLTVLDLGTNQLTV----LPSAVFDRLVHLKELFMCCNKLTE------LP---RGIERLTHLT  138 (229)
T ss_dssp             ----------TTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCS------CC---TTGGGCTTCS
T ss_pred             ----------hhcccCCCcCEEECCCCcCCc----cChhHhCcchhhCeEeccCCcccc------cC---cccccCCCCC
Confidence                      233467999999999999996    223446889999999999999986      55   5677889999


Q ss_pred             EEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056          405 ELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       405 ~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                      +|+|++|+|+..    ....+..+ .+|++|++++|++....+
T Consensus       139 ~L~L~~N~l~~~----~~~~~~~l-~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          139 HLALDQNQLKSI----PHGAFDRL-SSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             EEECCSSCCCCC----CTTTTTTC-TTCCEEECTTSCBCTTBG
T ss_pred             EEECCCCcCCcc----CHHHHhCC-CCCCEEEeeCCCccCCcc
Confidence            999999999874    22445664 449999999999986643

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.51  E-value=1.1e-13  Score=134.29  Aligned_cols=169  Identities=18%  Similarity=0.196  Sum_probs=123.5

Q ss_pred             CCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCC--CCCCc
Q 013056          244 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN--SIGGW  321 (450)
Q Consensus       244 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n--~l~~~  321 (450)
                      +++|+.|++++|.-..         ++. + .+++|++|+|..+.++...+..++.   ..+++|++|+|+.+  ...+ 
T Consensus       171 ~P~L~~L~L~g~~~l~---------l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~---~~lp~L~~L~L~~~~~~~~~-  235 (362)
T 2ra8_A          171 MPLLNNLKIKGTNNLS---------IGK-K-PRPNLKSLEIISGGLPDSVVEDILG---SDLPNLEKLVLYVGVEDYGF-  235 (362)
T ss_dssp             CTTCCEEEEECCBTCB---------CCS-C-BCTTCSEEEEECSBCCHHHHHHHHH---SBCTTCCEEEEECBCGGGTC-
T ss_pred             CCCCcEEEEeCCCCce---------ecc-c-cCCCCcEEEEecCCCChHHHHHHHH---ccCCCCcEEEEecccccccc-
Confidence            5788888887763111         111 2 3689999999999998888777653   35799999998642  2222 


Q ss_pred             ccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCC
Q 013056          322 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN  401 (450)
Q Consensus       322 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~  401 (450)
                        ..+...+...+.. ..+++|+.|+|++|.+++.++..+.++ ..+++|++|+|+.|.|++.|+.++.    ..+..++
T Consensus       236 --~~~~~~l~~~l~~-~~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~----~~L~~l~  307 (362)
T 2ra8_A          236 --DGDMNVFRPLFSK-DRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLL----DHVDKIK  307 (362)
T ss_dssp             --CSCGGGTGGGSCT-TTCTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSCCBHHHHHHHH----TTHHHHT
T ss_pred             --chhHHHHHHHHhc-CCCCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCCCChHHHHHHH----hhcccCC
Confidence              1111122222221 246899999999999998877666554 4688999999999999999998886    3345668


Q ss_pred             CcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCC
Q 013056          402 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN  441 (450)
Q Consensus       402 ~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~  441 (450)
                      +|+.|+|++|.|++.|+..+..++      ...++++.|+
T Consensus       308 ~L~~L~L~~n~i~d~~~~~l~~al------g~~~~~~~~~  341 (362)
T 2ra8_A          308 HLKFINMKYNYLSDEMKKELQKSL------PMKIDVSDSQ  341 (362)
T ss_dssp             TCSEEECCSBBCCHHHHHHHHHHC------CSEEECCSBC
T ss_pred             cceEEECCCCcCCHHHHHHHHHHc------CCEEEecCCc
Confidence            999999999999999988887765      2458888876

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.51  E-value=2.7e-16  Score=162.08  Aligned_cols=105  Identities=26%  Similarity=0.335  Sum_probs=79.4

Q ss_pred             CCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhh
Q 013056          278 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKAD  357 (450)
Q Consensus       278 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~  357 (450)
                      .|++|+|++|.+++ .+. +     ..+++|+.|+|++|.++.         +|..++   .+++|+.|+|++|.|+.  
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~-----~~l~~L~~L~Ls~N~l~~---------lp~~~~---~l~~L~~L~Ls~N~l~~--  500 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-L-----EQLLLVTHLDLSHNRLRA---------LPPALA---ALRCLEVLQASDNALEN--  500 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-G-----GGGTTCCEEECCSSCCCC---------CCGGGG---GCTTCCEEECCSSCCCC--
T ss_pred             CceEEEecCCCCCC-CcC-c-----cccccCcEeecCcccccc---------cchhhh---cCCCCCEEECCCCCCCC--
Confidence            58888888888876 332 2     446888888888888873         335565   55788888888888885  


Q ss_pred             HHHHHHHhhcCCCCCEEecCCCCCChhhHHHHH-HHHHhhcCCCCCcCEEEccCCCCCh
Q 013056          358 ARDLGSALVHIPNLEILDISDNTIEDDGIRSLI-PYFVQASERCNPLVELYLENCELSG  415 (450)
Q Consensus       358 ~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~-~~l~~~l~~~~~L~~L~L~~n~l~~  415 (450)
                         +| .+..+++|++|+|++|+|++.     . |   ..+..+++|+.|+|++|.|+.
T Consensus       501 ---lp-~l~~l~~L~~L~Ls~N~l~~~-----~~p---~~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          501 ---VD-GVANLPRLQELLLCNNRLQQS-----AAI---QPLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             ---CG-GGTTCSSCCEEECCSSCCCSS-----STT---GGGGGCTTCCEEECTTSGGGG
T ss_pred             ---Cc-ccCCCCCCcEEECCCCCCCCC-----CCc---HHHhcCCCCCEEEecCCcCCC
Confidence               66 788888888888888888762     1 4   567777888888888888765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.51  E-value=5.7e-15  Score=133.61  Aligned_cols=153  Identities=18%  Similarity=0.149  Sum_probs=107.1

Q ss_pred             cEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHH
Q 013056          216 ASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGR  295 (450)
Q Consensus       216 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  295 (450)
                      +.++.+++.++.         +....  ..+|++|++++|.++.        ..+..+..+++|++|+|++|.++...+.
T Consensus        14 ~~v~c~~~~l~~---------iP~~l--~~~l~~L~l~~n~i~~--------i~~~~~~~l~~L~~L~Ls~N~i~~~~~~   74 (220)
T 2v9t_B           14 NIVDCRGKGLTE---------IPTNL--PETITEIRLEQNTIKV--------IPPGAFSPYKKLRRIDLSNNQISELAPD   74 (220)
T ss_dssp             TEEECTTSCCSS---------CCSSC--CTTCCEEECCSSCCCE--------ECTTSSTTCTTCCEEECCSSCCCEECTT
T ss_pred             CEEEcCCCCcCc---------CCCcc--CcCCCEEECCCCcCCC--------cCHhHhhCCCCCCEEECCCCcCCCcCHH
Confidence            567777777762         11110  2578888888888876        2334566778888888888888775444


Q ss_pred             HHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEe
Q 013056          296 MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILD  375 (450)
Q Consensus       296 ~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~  375 (450)
                      .+     ..+++|++|+|++|.++...+           ..+..+++|+.|+|++|.|+.    ..+..+..+++|++|+
T Consensus        75 ~~-----~~l~~L~~L~Ls~N~l~~l~~-----------~~f~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~  134 (220)
T 2v9t_B           75 AF-----QGLRSLNSLVLYGNKITELPK-----------SLFEGLFSLQLLLLNANKINC----LRVDAFQDLHNLNLLS  134 (220)
T ss_dssp             TT-----TTCSSCCEEECCSSCCCCCCT-----------TTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEE
T ss_pred             Hh-----hCCcCCCEEECCCCcCCccCH-----------hHccCCCCCCEEECCCCCCCE----eCHHHcCCCCCCCEEE
Confidence            43     446888888888888875332           223466888888888888886    2355677888888888


Q ss_pred             cCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056          376 ISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  415 (450)
Q Consensus       376 Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  415 (450)
                      |++|.|+.      ++.  ..+..+++|++|+|++|.+..
T Consensus       135 L~~N~l~~------~~~--~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          135 LYDNKLQT------IAK--GTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCSSCCSC------CCT--TTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCcCCE------ECH--HHHhCCCCCCEEEeCCCCcCC
Confidence            88888876      321  456777888888888888654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.50  E-value=2e-16  Score=162.99  Aligned_cols=198  Identities=21%  Similarity=0.171  Sum_probs=135.8

Q ss_pred             hcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCC
Q 013056          182 LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENC  261 (450)
Q Consensus       182 ~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~  261 (450)
                      ..+++|+.|+|++|.+...+..     +.++++|+.|++++|...    ..+...+..               +.+..  
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~-----i~~l~~L~~L~l~~n~~l----~~l~~ll~~---------------~~~~~--  399 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSE-----LESCKELQELEPENKWCL----LTIILLMRA---------------LDPLL--  399 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHH-----HHHHHHHHHHCTTCHHHH----HHHHHHHHH---------------HCTGG--
T ss_pred             ccCccceeccCChhhHHhhHHH-----HHHHHHHHHhccccchhh----hhHHHHHHh---------------ccccc--
Confidence            3467778888888775433222     345667777777654321    111111100               01112  


Q ss_pred             chhhHHHHHHhhcCCCCCCEEe-cCCCCCChhHHH-----HHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhh
Q 013056          262 PSSVVVELVSFLSSGRSLCSLK-LRHCHLDRDFGR-----MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLG  335 (450)
Q Consensus       262 ~~~~~~~l~~~l~~~~~L~~L~-Ls~n~l~~~~~~-----~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~  335 (450)
                            ..+..++.+++|+.|+ ++.|.+..-...     .+. .+ . ...|+.|+|++|.+++         +|. ++
T Consensus       400 ------~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~-~l-~-~~~L~~L~Ls~n~l~~---------lp~-~~  460 (567)
T 1dce_A          400 ------YEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVL-KM-E-YADVRVLHLAHKDLTV---------LCH-LE  460 (567)
T ss_dssp             ------GHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH-HH-H-HTTCSEEECTTSCCSS---------CCC-GG
T ss_pred             ------CCHHHHHHHHhcccCcchhhcccchhhhhhhhccccc-cc-C-ccCceEEEecCCCCCC---------CcC-cc
Confidence                  3556666777888887 565544321110     111 11 1 2469999999999986         333 44


Q ss_pred             CCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056          336 AGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  415 (450)
Q Consensus       336 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  415 (450)
                         .+++|+.|+|++|.|+.     +|..+..+++|+.|+|++|.|+.      +|    .+..+++|++|+|++|.|+.
T Consensus       461 ---~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~------lp----~l~~l~~L~~L~Ls~N~l~~  522 (567)
T 1dce_A          461 ---QLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALEN------VD----GVANLPRLQELLLCNNRLQQ  522 (567)
T ss_dssp             ---GGTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCC------CG----GGTTCSSCCEEECCSSCCCS
T ss_pred             ---ccccCcEeecCcccccc-----cchhhhcCCCCCEEECCCCCCCC------Cc----ccCCCCCCcEEECCCCCCCC
Confidence               56899999999999995     88999999999999999999997      54    47888999999999999998


Q ss_pred             hHHHHH-HHHHhcCCCCCcEEECcCCCCCcccc
Q 013056          416 RGVSQL-LDTLSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       416 ~g~~~l-~~~l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                      .    . +..+..+.. |+.|+|++|+|++..+
T Consensus       523 ~----~~p~~l~~l~~-L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          523 S----AAIQPLVSCPR-LVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             S----STTGGGGGCTT-CCEEECTTSGGGGSSS
T ss_pred             C----CCcHHHhcCCC-CCEEEecCCcCCCCcc
Confidence            3    2 677888544 9999999999988755

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.50  E-value=1.6e-15  Score=147.99  Aligned_cols=180  Identities=21%  Similarity=0.142  Sum_probs=112.8

Q ss_pred             hhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHh-cCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056          164 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQ-NSETLASLEFLHCKLSPSFVEGICRSLCSKRK  242 (450)
Q Consensus       164 l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~  242 (450)
                      .+.++++++.+..+|..+.  ..++.|+|++|.+.......    +. ++++|+.|+|++|.|+......+..       
T Consensus        20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~----~~~~l~~L~~L~L~~N~i~~i~~~~~~~-------   86 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEW----TPTRLTNLHSLLLSHNHLNFISSEAFVP-------   86 (361)
T ss_dssp             TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTS----SSSCCTTCCEEECCSSCCCEECTTTTTT-------
T ss_pred             CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhh----hhhcccccCEEECCCCcCCccChhhccC-------
Confidence            3445666666666555443  45778888888755443322    33 6778888888888877554433332       


Q ss_pred             CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056          243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  322 (450)
Q Consensus       243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  322 (450)
                       +.+|++|+|++|.++.        .....+..+++|++|+|++|.++...+..+     ..+++|++|+|++|.+++..
T Consensus        87 -l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~-----~~l~~L~~L~L~~N~l~~l~  152 (361)
T 2xot_A           87 -VPNLRYLDLSSNHLHT--------LDEFLFSDLQALEVLLLYNNHIVVVDRNAF-----EDMAQLQKLYLSQNQISRFP  152 (361)
T ss_dssp             -CTTCCEEECCSSCCCE--------ECTTTTTTCTTCCEEECCSSCCCEECTTTT-----TTCTTCCEEECCSSCCCSCC
T ss_pred             -CCCCCEEECCCCcCCc--------CCHHHhCCCcCCCEEECCCCcccEECHHHh-----CCcccCCEEECCCCcCCeeC
Confidence             5778888888888776        233456677888888888888776433333     44678888888888877532


Q ss_pred             cccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCC--CCEEecCCCCCC
Q 013056          323 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN--LEILDISDNTIE  382 (450)
Q Consensus       323 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~--L~~L~Ls~N~l~  382 (450)
                      +        ..+..+..+++|+.|+|++|.|+.-.    +..+..++.  |+.|+|++|.+.
T Consensus       153 ~--------~~~~~~~~l~~L~~L~L~~N~l~~l~----~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          153 V--------ELIKDGNKLPKLMLLDLSSNKLKKLP----LTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             G--------GGTC----CTTCCEEECCSSCCCCCC----HHHHHHSCHHHHTTEECCSSCEE
T ss_pred             H--------HHhcCcccCCcCCEEECCCCCCCccC----HHHhhhccHhhcceEEecCCCcc
Confidence            2        22221135677888888888877622    234555655  477888888775

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.50  E-value=6.4e-15  Score=133.30  Aligned_cols=152  Identities=18%  Similarity=0.167  Sum_probs=107.1

Q ss_pred             cEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHH
Q 013056          188 QSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVV  267 (450)
Q Consensus       188 ~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~  267 (450)
                      +.++++++.+......       -.++|+.|++++|.|+......+..        +.+|++|+|++|.++.        
T Consensus        14 ~~v~c~~~~l~~iP~~-------l~~~l~~L~l~~n~i~~i~~~~~~~--------l~~L~~L~Ls~N~i~~--------   70 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTN-------LPETITEIRLEQNTIKVIPPGAFSP--------YKKLRRIDLSNNQISE--------   70 (220)
T ss_dssp             TEEECTTSCCSSCCSS-------CCTTCCEEECCSSCCCEECTTSSTT--------CTTCCEEECCSSCCCE--------
T ss_pred             CEEEcCCCCcCcCCCc-------cCcCCCEEECCCCcCCCcCHhHhhC--------CCCCCEEECCCCcCCC--------
Confidence            5677777775543321       1257888899988887544333322        5788889998888877        


Q ss_pred             HHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEE
Q 013056          268 ELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLN  347 (450)
Q Consensus       268 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~  347 (450)
                      ..+..+.++++|++|+|++|.++.. +..+    +..+++|++|+|++|.+++..+           ..+..+++|+.|+
T Consensus        71 ~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~----f~~l~~L~~L~L~~N~l~~~~~-----------~~~~~l~~L~~L~  134 (220)
T 2v9t_B           71 LAPDAFQGLRSLNSLVLYGNKITEL-PKSL----FEGLFSLQLLLLNANKINCLRV-----------DAFQDLHNLNLLS  134 (220)
T ss_dssp             ECTTTTTTCSSCCEEECCSSCCCCC-CTTT----TTTCTTCCEEECCSSCCCCCCT-----------TTTTTCTTCCEEE
T ss_pred             cCHHHhhCCcCCCEEECCCCcCCcc-CHhH----ccCCCCCCEEECCCCCCCEeCH-----------HHcCCCCCCCEEE
Confidence            3455677888889999998888763 2221    3457888999999988887544           3334668888899


Q ss_pred             ccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCC
Q 013056          348 LRGNNLCKADARDLGSALVHIPNLEILDISDNTIE  382 (450)
Q Consensus       348 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~  382 (450)
                      |++|.|+..    .+..+..+++|++|+|++|.+.
T Consensus       135 L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          135 LYDNKLQTI----AKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCSSCCSCC----CTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCcCCEE----CHHHHhCCCCCCEEEeCCCCcC
Confidence            999888862    2335777888889999888874

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.50  E-value=5.8e-15  Score=133.56  Aligned_cols=152  Identities=14%  Similarity=0.131  Sum_probs=108.5

Q ss_pred             cEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHH-HHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhH
Q 013056          188 QSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVE-GICRSLCSKRKRIHKIENLSIDISSFIENCPSSVV  266 (450)
Q Consensus       188 ~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~-~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~  266 (450)
                      +.+++++|.+......       -.+.+++|+|++|.|+...+. .+..        +++|++|++++|.++.       
T Consensus        14 ~~l~~s~n~l~~iP~~-------~~~~~~~L~L~~N~l~~~~~~~~~~~--------l~~L~~L~L~~N~i~~-------   71 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEH-------IPQYTAELRLNNNEFTVLEATGIFKK--------LPQLRKINFSNNKITD-------   71 (220)
T ss_dssp             TEEECCSSCCSSCCSC-------CCTTCSEEECCSSCCCEECCCCCGGG--------CTTCCEEECCSSCCCE-------
T ss_pred             CEeEeCCCCcccCccC-------CCCCCCEEEcCCCcCCccCchhhhcc--------CCCCCEEECCCCcCCE-------
Confidence            5788888876543221       234678889998888754321 1211        6788899998888877       


Q ss_pred             HHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEE
Q 013056          267 VELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLL  346 (450)
Q Consensus       267 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L  346 (450)
                       .....+..+++|++|+|++|.+++..+..+     ..+++|++|+|++|.+++..+           ..+..+++|+.|
T Consensus        72 -i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~~~-----------~~~~~l~~L~~L  134 (220)
T 2v70_A           72 -IEEGAFEGASGVNEILLTSNRLENVQHKMF-----KGLESLKTLMLRSNRITCVGN-----------DSFIGLSSVRLL  134 (220)
T ss_dssp             -ECTTTTTTCTTCCEEECCSSCCCCCCGGGG-----TTCSSCCEEECTTSCCCCBCT-----------TSSTTCTTCSEE
T ss_pred             -ECHHHhCCCCCCCEEECCCCccCccCHhHh-----cCCcCCCEEECCCCcCCeECH-----------hHcCCCccCCEE
Confidence             333456778889999999888877444333     457888999999988887544           333466888889


Q ss_pred             EccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCC
Q 013056          347 NLRGNNLCKADARDLGSALVHIPNLEILDISDNTIE  382 (450)
Q Consensus       347 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~  382 (450)
                      +|++|.|+.    ..|..+..+++|++|+|++|.+.
T Consensus       135 ~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          135 SLYDNQITT----VAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             ECTTSCCCC----BCTTTTTTCTTCCEEECCSCCEE
T ss_pred             ECCCCcCCE----ECHHHhcCCCCCCEEEecCcCCc
Confidence            999988886    23667788888999999988875

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.49  E-value=4.9e-14  Score=126.19  Aligned_cols=156  Identities=19%  Similarity=0.192  Sum_probs=117.2

Q ss_pred             eEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCc
Q 013056          248 ENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDR  327 (450)
Q Consensus       248 ~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~  327 (450)
                      +.++.+++.++.....           ..++|++|++++|.+++..+..     +..+++|++|++++|.+++..+    
T Consensus        10 ~~v~c~~~~l~~~p~~-----------~~~~l~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~----   69 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTG-----------IPAQTTYLDLETNSLKSLPNGV-----FDELTSLTQLYLGGNKLQSLPN----   69 (208)
T ss_dssp             TEEECCSSCCSSCCSC-----------CCTTCSEEECCSSCCCCCCTTT-----TTTCTTCSEEECCSSCCCCCCT----
T ss_pred             CEEEecCCCccCCCCC-----------CCCCCcEEEcCCCccCcCChhh-----hcccccCcEEECCCCccCccCh----
Confidence            4666777766653221           2468999999999998643332     2457999999999999986433    


Q ss_pred             ccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEE
Q 013056          328 SGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELY  407 (450)
Q Consensus       328 ~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~  407 (450)
                             ..+..+++|++|+|++|.++.    ..+..+..+++|++|++++|+|+.      ++.  ..+..+++|++|+
T Consensus        70 -------~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~~L~  130 (208)
T 2o6s_A           70 -------GVFNKLTSLTYLNLSTNQLQS----LPNGVFDKLTQLKELALNTNQLQS------LPD--GVFDKLTQLKDLR  130 (208)
T ss_dssp             -------TTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCC------CCT--TTTTTCTTCCEEE
T ss_pred             -------hhcCCCCCcCEEECCCCcCCc----cCHhHhcCccCCCEEEcCCCcCcc------cCH--hHhccCCcCCEEE
Confidence                   223467999999999999986    223446889999999999999987      331  4578889999999


Q ss_pred             ccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056          408 LENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       408 L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                      +++|.++..    ....+..+ .+|++|++++|++.+..+
T Consensus       131 l~~N~l~~~----~~~~~~~l-~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A          131 LYQNQLKSV----PDGVFDRL-TSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             CCSSCCSCC----CTTTTTTC-TTCCEEECCSCCBCCCTT
T ss_pred             CCCCcccee----CHHHhccC-CCccEEEecCCCeecCCC
Confidence            999999874    22335553 459999999999987655

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.47  E-value=2.8e-14  Score=149.04  Aligned_cols=185  Identities=18%  Similarity=0.107  Sum_probs=95.7

Q ss_pred             CccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhh
Q 013056          186 KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV  265 (450)
Q Consensus       186 ~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~  265 (450)
                      ++++|+|++|.+....+..    +.++++|++|+|++|.|+...+.++..        +++|++|+|++|+++.      
T Consensus        53 ~~~~LdLs~N~i~~l~~~~----f~~l~~L~~L~Ls~N~i~~i~~~~f~~--------L~~L~~L~Ls~N~l~~------  114 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQS--------LSHLSTLILTGNPIQS------  114 (635)
T ss_dssp             TCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTT--------CTTCCEEECTTCCCCE------
T ss_pred             CCCEEEeeCCCCCCCCHHH----HhCCCCCCEEECCCCcCCCcChhHhcC--------CCCCCEEEccCCcCCC------
Confidence            5666666666654432221    456666666666666666433333322        4666666666666655      


Q ss_pred             HHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeE
Q 013056          266 VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRL  345 (450)
Q Consensus       266 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~  345 (450)
                        ..+..|.++++|++|+|++|++++..+..     +..+++|++|+|++|.+.+..       +|..++   .+++|++
T Consensus       115 --l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~-----~~~L~~L~~L~Ls~N~l~~~~-------~~~~~~---~l~~L~~  177 (635)
T 4g8a_A          115 --LALGAFSGLSSLQKLVAVETNLASLENFP-----IGHLKTLKELNVAHNLIQSFK-------LPEYFS---NLTNLEH  177 (635)
T ss_dssp             --ECGGGGTTCTTCCEEECTTSCCCCSTTCC-----CTTCTTCCEEECCSSCCCCCC-------CCGGGG---GCTTCCE
T ss_pred             --CCHHHhcCCCCCCEEECCCCcCCCCChhh-----hhcCcccCeeccccCccccCC-------Cchhhc---cchhhhh
Confidence              22234556666777777776665522211     234566777777776665311       113333   3466667


Q ss_pred             EEccCCCCChhhHHHHHHHhhcCC-CCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056          346 LNLRGNNLCKADARDLGSALVHIP-NLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  415 (450)
Q Consensus       346 L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  415 (450)
                      |+|++|+|+......+. .+...+ .+..++++.|.++.      ++   ........++.+++.+|..+.
T Consensus       178 L~L~~N~l~~~~~~~l~-~L~~l~~~~~~~~ls~n~l~~------i~---~~~~~~~~~~~l~l~~n~~~~  238 (635)
T 4g8a_A          178 LDLSSNKIQSIYCTDLR-VLHQMPLLNLSLDLSLNPMNF------IQ---PGAFKEIRLHKLTLRNNFDSL  238 (635)
T ss_dssp             EECCSSCCCEECGGGGH-HHHTCTTCCCEEECTTCCCCE------EC---TTTTTTCEEEEEEEESCCSSH
T ss_pred             hcccCcccccccccccc-chhhhhhhhhhhhcccCcccc------cC---cccccchhhhhhhhhcccccc
Confidence            77777766552111111 122222 23456666666654      22   112222455666666665543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.45  E-value=5.3e-15  Score=156.94  Aligned_cols=115  Identities=23%  Similarity=0.213  Sum_probs=58.8

Q ss_pred             HHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEcc
Q 013056          270 VSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLR  349 (450)
Q Consensus       270 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~  349 (450)
                      +..+..++.|+.|+|++|.+.. .+..+.     .+++|++|+|++|.++.         +|..++   .+++|+.|+|+
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~-----~l~~L~~L~Ls~N~l~~---------lp~~~~---~l~~L~~L~Ls  278 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFN-ISANIF-----KYDFLTRLYLNGNSLTE---------LPAEIK---NLSNLRVLDLS  278 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSC-CCGGGG-----GCCSCSCCBCTTSCCSC---------CCGGGG---GGTTCCEEECT
T ss_pred             hhhhccCCCCcEEECCCCCCCC-CChhhc-----CCCCCCEEEeeCCcCcc---------cChhhh---CCCCCCEEeCc
Confidence            3344455556666666665543 222221     24556666666665552         223343   34556666666


Q ss_pred             CCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChh
Q 013056          350 GNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR  416 (450)
Q Consensus       350 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~  416 (450)
                      +|.|+.     +|..+..+++|++|+|++|.|+.      +|   ..+..+++|++|+|++|.|+..
T Consensus       279 ~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~------lp---~~~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          279 HNRLTS-----LPAELGSCFQLKYFYFFDNMVTT------LP---WEFGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             TSCCSS-----CCSSGGGGTTCSEEECCSSCCCC------CC---SSTTSCTTCCCEECTTSCCCSH
T ss_pred             CCcCCc-----cChhhcCCCCCCEEECCCCCCCc------cC---hhhhcCCCccEEeCCCCccCCC
Confidence            666553     45555556666666666666554      44   3355556666666666665543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.43  E-value=3.2e-14  Score=122.81  Aligned_cols=137  Identities=22%  Similarity=0.248  Sum_probs=69.3

Q ss_pred             CCCCEEecCCCCCC-hhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCCh
Q 013056          277 RSLCSLKLRHCHLD-RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCK  355 (450)
Q Consensus       277 ~~L~~L~Ls~n~l~-~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~  355 (450)
                      ++|++|++++|.++ +..+..+     ..+++|++|++++|.+++.             ..+..+++|+.|++++|.++.
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~-----~~l~~L~~L~l~~n~l~~~-------------~~~~~l~~L~~L~Ls~N~l~~   85 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLT-----AEFVNLEFLSLINVGLISV-------------SNLPKLPKLKKLELSENRIFG   85 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCC-----GGGGGCCEEEEESSCCCCC-------------SSCCCCSSCCEEEEESCCCCS
T ss_pred             ccCCEEECCCCCCChhhHHHHH-----HhCCCCCEEeCcCCCCCCh-------------hhhccCCCCCEEECcCCcCch
Confidence            45555555555554 2222211     2245566666666665531             223345566666666666654


Q ss_pred             hhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEE
Q 013056          356 ADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSL  435 (450)
Q Consensus       356 ~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L  435 (450)
                          .+|..+..+++|++|+|++|.|++      ++.+ ..+..+++|++|++++|.++..... ....+..+. +|++|
T Consensus        86 ----~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~-~~l~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~l~-~L~~L  152 (168)
T 2ell_A           86 ----GLDMLAEKLPNLTHLNLSGNKLKD------ISTL-EPLKKLECLKSLDLFNCEVTNLNDY-RESVFKLLP-QLTYL  152 (168)
T ss_dssp             ----CCCHHHHHCTTCCEEECBSSSCCS------SGGG-GGGSSCSCCCEEECCSSGGGTSTTH-HHHHHTTCS-SCCEE
T ss_pred             ----HHHHHHhhCCCCCEEeccCCccCc------chhH-HHHhcCCCCCEEEeeCCcCcchHHH-HHHHHHhCc-cCcEe
Confidence                134444556666666666666655      2111 2345556666666666665553110 012344432 36666


Q ss_pred             ECcCCCCCc
Q 013056          436 SIADNNLGR  444 (450)
Q Consensus       436 ~L~~N~l~~  444 (450)
                      ++++|.+..
T Consensus       153 ~l~~n~~~~  161 (168)
T 2ell_A          153 DGYDREDQE  161 (168)
T ss_dssp             TTEETTSCB
T ss_pred             cCCCCChhh
Confidence            666666544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.42  E-value=5.2e-14  Score=121.51  Aligned_cols=137  Identities=23%  Similarity=0.159  Sum_probs=109.1

Q ss_pred             CCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccc
Q 013056          244 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS  323 (450)
Q Consensus       244 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~  323 (450)
                      .++|++|++++|.+++.       .++..+..+++|++|++++|.+++.  ..     +..+++|++|++++|.+.+..+
T Consensus        23 ~~~L~~L~l~~n~l~~~-------~i~~~~~~l~~L~~L~l~~n~l~~~--~~-----~~~l~~L~~L~Ls~N~l~~~~~   88 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDG-------KIEGLTAEFVNLEFLSLINVGLISV--SN-----LPKLPKLKKLELSENRIFGGLD   88 (168)
T ss_dssp             TTSCSEEECCSCBCBTT-------BCSSCCGGGGGCCEEEEESSCCCCC--SS-----CCCCSSCCEEEEESCCCCSCCC
T ss_pred             cccCCEEECCCCCCChh-------hHHHHHHhCCCCCEEeCcCCCCCCh--hh-----hccCCCCCEEECcCCcCchHHH
Confidence            58899999999999821       2445567889999999999999874  22     3568999999999999987544


Q ss_pred             ccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHH--HHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCC
Q 013056          324 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLG--SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN  401 (450)
Q Consensus       324 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~  401 (450)
                              ..+.   .+++|+.|+|++|.|++     ++  ..+..+++|++|++++|.+++...     .....+..++
T Consensus        89 --------~~~~---~l~~L~~L~Ls~N~l~~-----~~~~~~l~~l~~L~~L~l~~N~l~~~~~-----~~~~~~~~l~  147 (168)
T 2ell_A           89 --------MLAE---KLPNLTHLNLSGNKLKD-----ISTLEPLKKLECLKSLDLFNCEVTNLND-----YRESVFKLLP  147 (168)
T ss_dssp             --------HHHH---HCTTCCEEECBSSSCCS-----SGGGGGGSSCSCCCEEECCSSGGGTSTT-----HHHHHHTTCS
T ss_pred             --------HHHh---hCCCCCEEeccCCccCc-----chhHHHHhcCCCCCEEEeeCCcCcchHH-----HHHHHHHhCc
Confidence                    5555   46899999999999997     44  678899999999999999987311     0002577889


Q ss_pred             CcCEEEccCCCCCh
Q 013056          402 PLVELYLENCELSG  415 (450)
Q Consensus       402 ~L~~L~L~~n~l~~  415 (450)
                      +|++|++++|.+..
T Consensus       148 ~L~~L~l~~n~~~~  161 (168)
T 2ell_A          148 QLTYLDGYDREDQE  161 (168)
T ss_dssp             SCCEETTEETTSCB
T ss_pred             cCcEecCCCCChhh
Confidence            99999999998766

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.42  E-value=9.7e-14  Score=117.26  Aligned_cols=131  Identities=21%  Similarity=0.231  Sum_probs=68.2

Q ss_pred             CCCCEEecCCCCCC-hhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCCh
Q 013056          277 RSLCSLKLRHCHLD-RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCK  355 (450)
Q Consensus       277 ~~L~~L~Ls~n~l~-~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~  355 (450)
                      ++|++|++++|.++ +..+..     +..+++|++|++++|.+++.             ..+..+++|+.|++++|.++.
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~-----~~~l~~L~~L~l~~n~l~~~-------------~~~~~l~~L~~L~Ls~n~i~~   78 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGL-----TDEFEELEFLSTINVGLTSI-------------ANLPKLNKLKKLELSDNRVSG   78 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSC-----CTTCTTCCEEECTTSCCCCC-------------TTCCCCTTCCEEECCSSCCCS
T ss_pred             ccCeEEEccCCcCChhHHHHH-----HhhcCCCcEEECcCCCCCCc-------------hhhhcCCCCCEEECCCCcccc
Confidence            44555555555554 222221     12345666666666665541             222345666666666666664


Q ss_pred             hhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEE
Q 013056          356 ADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSL  435 (450)
Q Consensus       356 ~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L  435 (450)
                          .+|..+..+++|++|++++|.+++      ++.. ..+..+++|++|++++|.++..... ....+..+. +|++|
T Consensus        79 ----~~~~~~~~l~~L~~L~ls~N~i~~------~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~l~-~L~~L  145 (149)
T 2je0_A           79 ----GLEVLAEKCPNLTHLNLSGNKIKD------LSTI-EPLKKLENLKSLDLFNCEVTNLNDY-RENVFKLLP-QLTYL  145 (149)
T ss_dssp             ----CTHHHHHHCTTCCEEECTTSCCCS------HHHH-GGGGGCTTCCEEECTTCGGGGSTTH-HHHHHHHCT-TCCEE
T ss_pred             ----hHHHHhhhCCCCCEEECCCCcCCC------hHHH-HHHhhCCCCCEEeCcCCcccchHHH-HHHHHHHCC-Ccccc
Confidence                245555556666666666666665      2110 3355556666666666666553210 012344432 26666


Q ss_pred             ECc
Q 013056          436 SIA  438 (450)
Q Consensus       436 ~L~  438 (450)
                      +++
T Consensus       146 ~l~  148 (149)
T 2je0_A          146 DGY  148 (149)
T ss_dssp             TTB
T ss_pred             cCC
Confidence            664

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.41  E-value=1.9e-13  Score=115.41  Aligned_cols=134  Identities=22%  Similarity=0.149  Sum_probs=103.3

Q ss_pred             CCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccc
Q 013056          244 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS  323 (450)
Q Consensus       244 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~  323 (450)
                      .++|++|++++|.+++.       .++..+..+++|++|++++|.+++.  ..     +..+++|++|++++|.+++..+
T Consensus        16 ~~~l~~L~l~~n~l~~~-------~~~~~~~~l~~L~~L~l~~n~l~~~--~~-----~~~l~~L~~L~Ls~n~i~~~~~   81 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEG-------KLEGLTDEFEELEFLSTINVGLTSI--AN-----LPKLNKLKKLELSDNRVSGGLE   81 (149)
T ss_dssp             GGGCSEEECTTCBCBTT-------BCCSCCTTCTTCCEEECTTSCCCCC--TT-----CCCCTTCCEEECCSSCCCSCTH
T ss_pred             CccCeEEEccCCcCChh-------HHHHHHhhcCCCcEEECcCCCCCCc--hh-----hhcCCCCCEEECCCCcccchHH
Confidence            47899999999999821       2445667889999999999999874  22     3568999999999999987433


Q ss_pred             ccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCc
Q 013056          324 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL  403 (450)
Q Consensus       324 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L  403 (450)
                              ..+.   .+++|++|++++|.+++..   .+..+..+++|++|++++|.+++....  .+   ..+..+++|
T Consensus        82 --------~~~~---~l~~L~~L~ls~N~i~~~~---~~~~~~~l~~L~~L~l~~N~l~~~~~~--~~---~~~~~l~~L  142 (149)
T 2je0_A           82 --------VLAE---KCPNLTHLNLSGNKIKDLS---TIEPLKKLENLKSLDLFNCEVTNLNDY--RE---NVFKLLPQL  142 (149)
T ss_dssp             --------HHHH---HCTTCCEEECTTSCCCSHH---HHGGGGGCTTCCEEECTTCGGGGSTTH--HH---HHHHHCTTC
T ss_pred             --------HHhh---hCCCCCEEECCCCcCCChH---HHHHHhhCCCCCEEeCcCCcccchHHH--HH---HHHHHCCCc
Confidence                    5555   4589999999999999721   237789999999999999999873210  00   235666899


Q ss_pred             CEEEccC
Q 013056          404 VELYLEN  410 (450)
Q Consensus       404 ~~L~L~~  410 (450)
                      ++|++++
T Consensus       143 ~~L~l~d  149 (149)
T 2je0_A          143 TYLDGYD  149 (149)
T ss_dssp             CEETTBC
T ss_pred             ccccCCC
Confidence            9999874

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.39  E-value=3.3e-15  Score=145.09  Aligned_cols=181  Identities=19%  Similarity=0.023  Sum_probs=82.1

Q ss_pred             chhhcccccCcchhhhHhh-hcCCCccEEEeecccChHHHHHHHHHHHhcCCCccE-EEccCCCCChhHHHHHHHHHhcc
Q 013056          163 YARCLRLQNALCVEETCQL-LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLAS-LEFLHCKLSPSFVEGICRSLCSK  240 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l-~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~-L~Ls~n~l~~~~~~~l~~~L~~~  240 (450)
                      .++.|+|++|.+..++... .++++|++|+|++|.+...++.   ..+.+++++.+ +.+++|+|+...+..+..     
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~---~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~-----  102 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA---DVFSNLPKLHEIRIEKANNLLYINPEAFQN-----  102 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECT---TSBCSCTTCCEEEEEEETTCCEECTTSBCC-----
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccCh---hHhhcchhhhhhhcccCCcccccCchhhhh-----
Confidence            3455556666555555433 3556666666666653221110   01334444443 344445555332222111     


Q ss_pred             ccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCC-CCCChhHHHHHHHHHhhCCCCCcEEeccCCCCC
Q 013056          241 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRH-CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG  319 (450)
Q Consensus       241 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~  319 (450)
                         +++|++|++++|.++....        ..+....++..|++.+ +.+.......+    ......++.|+|++|.|+
T Consensus       103 ---l~~L~~L~l~~n~l~~~~~--------~~~~~~~~l~~l~l~~~~~i~~l~~~~f----~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X          103 ---LPNLQYLLISNTGIKHLPD--------VHKIHSLQKVLLDIQDNINIHTIERNSF----VGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             ---CTTCCEEEEEEECCSSCCC--------CTTCCBSSCEEEEEESCTTCCEECTTSS----TTSBSSCEEEECCSSCCC
T ss_pred             ---ccccccccccccccccCCc--------hhhcccchhhhhhhccccccccccccch----hhcchhhhhhcccccccc
Confidence               4556666666665554221        1122334455555543 23433111111    011234566666666665


Q ss_pred             CcccccCcccHHHhhhCCCCCCceeEEEccC-CCCChhhHHHHHH-HhhcCCCCCEEecCCCCCCh
Q 013056          320 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRG-NNLCKADARDLGS-ALVHIPNLEILDISDNTIED  383 (450)
Q Consensus       320 ~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~~  383 (450)
                      ...         ....   ...+|+.|++.+ |.++.     +|. ++..+++|++|||++|+|+.
T Consensus       168 ~i~---------~~~f---~~~~L~~l~l~~~n~l~~-----i~~~~f~~l~~L~~LdLs~N~l~~  216 (350)
T 4ay9_X          168 EIH---------NSAF---NGTQLDELNLSDNNNLEE-----LPNDVFHGASGPVILDISRTRIHS  216 (350)
T ss_dssp             EEC---------TTSS---TTEEEEEEECTTCTTCCC-----CCTTTTTTEECCSEEECTTSCCCC
T ss_pred             CCC---------hhhc---cccchhHHhhccCCcccC-----CCHHHhccCcccchhhcCCCCcCc
Confidence            421         1111   224566666653 34553     443 34566666666666666655

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.38  E-value=1.2e-13  Score=122.00  Aligned_cols=132  Identities=18%  Similarity=0.142  Sum_probs=99.1

Q ss_pred             eeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccC
Q 013056          247 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD  326 (450)
Q Consensus       247 L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~  326 (450)
                      -+.++++++.++...         ..+  ..+|++|++++|.+++..+...    +..+++|++|+|++|.+++..+   
T Consensus        10 ~~~l~~s~~~l~~ip---------~~~--~~~l~~L~l~~n~i~~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~---   71 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIP---------RDI--PLHTTELLLNDNELGRISSDGL----FGRLPHLVKLELKRNQLTGIEP---   71 (192)
T ss_dssp             TTEEECTTSCCSSCC---------SCC--CTTCSEEECCSCCCCSBCCSCS----GGGCTTCCEEECCSSCCCCBCT---
T ss_pred             CCEEEcCCCCcCcCc---------cCC--CCCCCEEECCCCcCCccCCccc----cccCCCCCEEECCCCCCCCcCH---
Confidence            478899999887632         222  2389999999999877433211    2447899999999999987544   


Q ss_pred             cccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEE
Q 013056          327 RSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVEL  406 (450)
Q Consensus       327 ~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L  406 (450)
                           ..   +..+++|+.|+|++|+|+.    ..+..+..+++|++|+|++|+|+..     .|   ..+..+++|++|
T Consensus        72 -----~~---~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~-----~~---~~~~~l~~L~~L  131 (192)
T 1w8a_A           72 -----NA---FEGASHIQELQLGENKIKE----ISNKMFLGLHQLKTLNLYDNQISCV-----MP---GSFEHLNSLTSL  131 (192)
T ss_dssp             -----TT---TTTCTTCCEEECCSCCCCE----ECSSSSTTCTTCCEEECCSSCCCEE-----CT---TSSTTCTTCCEE
T ss_pred             -----hH---cCCcccCCEEECCCCcCCc----cCHHHhcCCCCCCEEECCCCcCCee-----CH---HHhhcCCCCCEE
Confidence                 33   3467899999999999987    2344577889999999999999873     34   567788999999


Q ss_pred             EccCCCCChh
Q 013056          407 YLENCELSGR  416 (450)
Q Consensus       407 ~L~~n~l~~~  416 (450)
                      +|++|.++..
T Consensus       132 ~L~~N~l~c~  141 (192)
T 1w8a_A          132 NLASNPFNCN  141 (192)
T ss_dssp             ECTTCCBCCS
T ss_pred             EeCCCCccCc
Confidence            9999998753

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.38  E-value=3.8e-13  Score=130.43  Aligned_cols=196  Identities=15%  Similarity=0.104  Sum_probs=129.9

Q ss_pred             hhhcCCCccEEEeecccChH----HH-HHHHHHHHhcCCCccEEEccCCC-CChhHHHHHHHHHhccccCCCCeeEEEcC
Q 013056          180 QLLRESKLQSLVLRWIRFEE----HV-QALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCSKRKRIHKIENLSID  253 (450)
Q Consensus       180 ~l~~~~~L~~L~Ls~n~~~~----~~-~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~~~~L~~L~L~  253 (450)
                      .+.++++|+.|.+..+..+.    .+ ..-+..++..+|+|+.|+|++|. +.-          ..  .+.++|++|++.
T Consensus       134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l----------~~--~~~~~L~~L~L~  201 (362)
T 2ra8_A          134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI----------GK--KPRPNLKSLEII  201 (362)
T ss_dssp             THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC----------CS--CBCTTCSEEEEE
T ss_pred             hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee----------cc--ccCCCCcEEEEe
Confidence            34456788888886543210    00 00122335677889999988772 220          00  115788999998


Q ss_pred             CCCCCCCCchhhHHHHHHhhc--CCCCCCEEecCC--CC-CChhHHHHHHHHHh-hCCCCCcEEeccCCCCCCcccccCc
Q 013056          254 ISSFIENCPSSVVVELVSFLS--SGRSLCSLKLRH--CH-LDRDFGRMVFSSLL-EASSSLSILDLSGNSIGGWLSKYDR  327 (450)
Q Consensus       254 ~n~i~~~~~~~~~~~l~~~l~--~~~~L~~L~Ls~--n~-l~~~~~~~l~~~L~-~~~~~L~~L~Ls~n~l~~~~~~~~~  327 (450)
                      .|.++.        .....+.  .+|+|++|+|+.  |. ..+.++..+...+. ..+++|++|+|++|.+++...    
T Consensus       202 ~~~l~~--------~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~----  269 (362)
T 2ra8_A          202 SGGLPD--------SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVV----  269 (362)
T ss_dssp             CSBCCH--------HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHH----
T ss_pred             cCCCCh--------HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHH----
Confidence            888766        3334443  688999998853  21 12212222222222 236899999999988874221    


Q ss_pred             ccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEE
Q 013056          328 SGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELY  407 (450)
Q Consensus       328 ~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~  407 (450)
                          ..+.....+++|++|+|+.|.|++.|++.++..+..+++|+.|+|++|.|++.|+.++..    ++     ...++
T Consensus       270 ----~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~----al-----g~~~~  336 (362)
T 2ra8_A          270 ----EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK----SL-----PMKID  336 (362)
T ss_dssp             ----HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH----HC-----CSEEE
T ss_pred             ----HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH----Hc-----CCEEE
Confidence                333322356899999999999999999999988889999999999999999999998863    23     45689


Q ss_pred             ccCCC
Q 013056          408 LENCE  412 (450)
Q Consensus       408 L~~n~  412 (450)
                      ++.++
T Consensus       337 ~~~~~  341 (362)
T 2ra8_A          337 VSDSQ  341 (362)
T ss_dssp             CCSBC
T ss_pred             ecCCc
Confidence            98887

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.35  E-value=2.5e-14  Score=151.73  Aligned_cols=108  Identities=21%  Similarity=0.227  Sum_probs=70.3

Q ss_pred             CCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccc
Q 013056          244 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS  323 (450)
Q Consensus       244 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~  323 (450)
                      +..|+.|+|++|.+..         ++..+..+++|++|+|++|.|+ ..+..+     ..+++|++|+|++|.|+.   
T Consensus       223 l~~L~~L~Ls~n~l~~---------l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~-----~~l~~L~~L~Ls~N~l~~---  284 (727)
T 4b8c_D          223 DQLWHALDLSNLQIFN---------ISANIFKYDFLTRLYLNGNSLT-ELPAEI-----KNLSNLRVLDLSHNRLTS---  284 (727)
T ss_dssp             CCCCCEEECTTSCCSC---------CCGGGGGCCSCSCCBCTTSCCS-CCCGGG-----GGGTTCCEEECTTSCCSS---
T ss_pred             CCCCcEEECCCCCCCC---------CChhhcCCCCCCEEEeeCCcCc-ccChhh-----hCCCCCCEEeCcCCcCCc---
Confidence            4667777777777665         2223335677777777777776 344433     335777777777777763   


Q ss_pred             ccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCCh
Q 013056          324 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED  383 (450)
Q Consensus       324 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~  383 (450)
                            +|..++   .+++|+.|+|++|.|+.     +|..+..+++|++|+|++|.|+.
T Consensus       285 ------lp~~~~---~l~~L~~L~L~~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          285 ------LPAELG---SCFQLKYFYFFDNMVTT-----LPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             ------CCSSGG---GGTTCSEEECCSSCCCC-----CCSSTTSCTTCCCEECTTSCCCS
T ss_pred             ------cChhhc---CCCCCCEEECCCCCCCc-----cChhhhcCCCccEEeCCCCccCC
Confidence                  224444   45677777777777764     66667777777777777777765

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.35  E-value=2.1e-13  Score=118.73  Aligned_cols=134  Identities=15%  Similarity=0.106  Sum_probs=78.0

Q ss_pred             CCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccc
Q 013056          244 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS  323 (450)
Q Consensus       244 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~  323 (450)
                      +.+|++|++++|.++..         +......++|++|++++|.+++.  ..     +..+++|++|++++|.+++..+
T Consensus        18 ~~~L~~L~l~~n~l~~i---------~~~~~~~~~L~~L~Ls~N~l~~~--~~-----l~~l~~L~~L~Ls~N~l~~~~~   81 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVI---------ENLGATLDQFDAIDFSDNEIRKL--DG-----FPLLRRLKTLLVNNNRICRIGE   81 (176)
T ss_dssp             TTSCEEEECTTSCCCSC---------CCGGGGTTCCSEEECCSSCCCEE--CC-----CCCCSSCCEEECCSSCCCEECS
T ss_pred             cCCceEEEeeCCCCchh---------HHhhhcCCCCCEEECCCCCCCcc--cc-----cccCCCCCEEECCCCcccccCc
Confidence            56677777777777652         11112223777777777777652  11     2446677777777777664211


Q ss_pred             ccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHH--HhhcCCCCCEEecCCCCCChhhHHHHHHHH-HhhcCCC
Q 013056          324 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS--ALVHIPNLEILDISDNTIEDDGIRSLIPYF-VQASERC  400 (450)
Q Consensus       324 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~--~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l-~~~l~~~  400 (450)
                              ..+.   .+++|+.|++++|.|++     ++.  .+..+++|++|++++|.+++.      |.. ...+..+
T Consensus        82 --------~~~~---~l~~L~~L~L~~N~i~~-----~~~~~~l~~l~~L~~L~l~~N~i~~~------~~~~~~~~~~l  139 (176)
T 1a9n_A           82 --------GLDQ---ALPDLTELILTNNSLVE-----LGDLDPLASLKSLTYLCILRNPVTNK------KHYRLYVIYKV  139 (176)
T ss_dssp             --------CHHH---HCTTCCEEECCSCCCCC-----GGGGGGGGGCTTCCEEECCSSGGGGS------TTHHHHHHHHC
T ss_pred             --------chhh---cCCCCCEEECCCCcCCc-----chhhHhhhcCCCCCEEEecCCCCCCc------HhHHHHHHHHC
Confidence                    1223   34667777777777764     444  566677777777777776542      100 0124445


Q ss_pred             CCcCEEEccCCCCCh
Q 013056          401 NPLVELYLENCELSG  415 (450)
Q Consensus       401 ~~L~~L~L~~n~l~~  415 (450)
                      ++|++|++++|.+.+
T Consensus       140 ~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          140 PQVRVLDFQKVKLKE  154 (176)
T ss_dssp             TTCSEETTEECCHHH
T ss_pred             CccceeCCCcCCHHH
Confidence            677777777776544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.32  E-value=5.3e-13  Score=116.11  Aligned_cols=36  Identities=11%  Similarity=0.101  Sum_probs=17.4

Q ss_pred             CeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCCh
Q 013056          246 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR  291 (450)
Q Consensus       246 ~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  291 (450)
                      +|++|++++|.++.        .  ..+..+++|++|++++|.+++
T Consensus        43 ~L~~L~Ls~N~l~~--------~--~~l~~l~~L~~L~Ls~N~l~~   78 (176)
T 1a9n_A           43 QFDAIDFSDNEIRK--------L--DGFPLLRRLKTLLVNNNRICR   78 (176)
T ss_dssp             CCSEEECCSSCCCE--------E--CCCCCCSSCCEEECCSSCCCE
T ss_pred             CCCEEECCCCCCCc--------c--cccccCCCCCEEECCCCcccc
Confidence            45555555555444        1  233444555555555555543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.32  E-value=7.1e-13  Score=117.09  Aligned_cols=131  Identities=17%  Similarity=0.159  Sum_probs=100.0

Q ss_pred             ccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHH
Q 013056          215 LASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFG  294 (450)
Q Consensus       215 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  294 (450)
                      -+.+++++|.++ ..+        ...  ..+|++|++++|.++.....       ..+..+++|++|+|++|.+++..+
T Consensus        10 ~~~l~~s~~~l~-~ip--------~~~--~~~l~~L~l~~n~i~~~~~~-------~~~~~l~~L~~L~Ls~N~l~~~~~   71 (192)
T 1w8a_A           10 GTTVDCTGRGLK-EIP--------RDI--PLHTTELLLNDNELGRISSD-------GLFGRLPHLVKLELKRNQLTGIEP   71 (192)
T ss_dssp             TTEEECTTSCCS-SCC--------SCC--CTTCSEEECCSCCCCSBCCS-------CSGGGCTTCCEEECCSSCCCCBCT
T ss_pred             CCEEEcCCCCcC-cCc--------cCC--CCCCCEEECCCCcCCccCCc-------cccccCCCCCEEECCCCCCCCcCH
Confidence            378999999886 222        111  34899999999998873221       136788999999999999988555


Q ss_pred             HHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEE
Q 013056          295 RMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEIL  374 (450)
Q Consensus       295 ~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  374 (450)
                      ..+     ..+++|++|+|++|.+++..+           ..+..+++|++|+|++|+|+.    ..|..+..+++|++|
T Consensus        72 ~~~-----~~l~~L~~L~Ls~N~l~~~~~-----------~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L  131 (192)
T 1w8a_A           72 NAF-----EGASHIQELQLGENKIKEISN-----------KMFLGLHQLKTLNLYDNQISC----VMPGSFEHLNSLTSL  131 (192)
T ss_dssp             TTT-----TTCTTCCEEECCSCCCCEECS-----------SSSTTCTTCCEEECCSSCCCE----ECTTSSTTCTTCCEE
T ss_pred             hHc-----CCcccCCEEECCCCcCCccCH-----------HHhcCCCCCCEEECCCCcCCe----eCHHHhhcCCCCCEE
Confidence            444     457899999999999987544           334467899999999999987    346778889999999


Q ss_pred             ecCCCCCCh
Q 013056          375 DISDNTIED  383 (450)
Q Consensus       375 ~Ls~N~l~~  383 (450)
                      +|++|.++.
T Consensus       132 ~L~~N~l~c  140 (192)
T 1w8a_A          132 NLASNPFNC  140 (192)
T ss_dssp             ECTTCCBCC
T ss_pred             EeCCCCccC
Confidence            999999864

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.31  E-value=3.8e-14  Score=125.94  Aligned_cols=142  Identities=18%  Similarity=0.160  Sum_probs=97.8

Q ss_pred             HHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEc
Q 013056          269 LVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNL  348 (450)
Q Consensus       269 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L  348 (450)
                      ++..+..+++|++|++++|.+++ .+ .+.     .+++|++|++++|.++.         +|..+.   .+++|+.|++
T Consensus        40 l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~-----~l~~L~~L~l~~n~l~~---------l~~~~~---~~~~L~~L~L  100 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTNNIEK-IS-SLS-----GMENLRILSLGRNLIKK---------IENLDA---VADTLEELWI  100 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEEEESC-CC-CHH-----HHTTCCEEEEEEEEECS---------CSSHHH---HHHHCSEEEE
T ss_pred             hhHHHhcCCCCCEEECCCCCCcc-cc-ccc-----cCCCCCEEECCCCCccc---------ccchhh---cCCcCCEEEC
Confidence            34466678888888888888776 33 332     25889999999988874         223333   3367889999


Q ss_pred             cCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhH------HHHHH
Q 013056          349 RGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG------VSQLL  422 (450)
Q Consensus       349 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g------~~~l~  422 (450)
                      ++|.++.     ++ .+..+++|++|++++|.+++      ++.+ ..+..+++|++|++++|.++...      .....
T Consensus       101 ~~N~l~~-----l~-~~~~l~~L~~L~l~~N~i~~------~~~~-~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~  167 (198)
T 1ds9_A          101 SYNQIAS-----LS-GIEKLVNLRVLYMSNNKITN------WGEI-DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI  167 (198)
T ss_dssp             EEEECCC-----HH-HHHHHHHSSEEEESEEECCC------HHHH-HHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHH
T ss_pred             cCCcCCc-----CC-ccccCCCCCEEECCCCcCCc------hhHH-HHHhcCCCCCEEEecCCccccccccccchHHHHH
Confidence            9998886     55 57788889999999999887      3321 34667788999999999876641      11123


Q ss_pred             HHHhcCCCCCcEEECcCCCCCcc
Q 013056          423 DTLSTLRRPPTSLSIADNNLGRF  445 (450)
Q Consensus       423 ~~l~~l~~~L~~L~L~~N~l~~~  445 (450)
                      ..+..++ +|+.||  +|.+++.
T Consensus       168 ~~~~~l~-~L~~Ld--~~~i~~~  187 (198)
T 1ds9_A          168 EVVKRLP-NLKKLD--GMPVDVD  187 (198)
T ss_dssp             HHHHHCS-SCSEEC--CGGGTTT
T ss_pred             HHHHhCC-CcEEEC--CcccCHH
Confidence            3455643 488887  6777653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.30  E-value=6.6e-13  Score=117.41  Aligned_cols=141  Identities=18%  Similarity=0.126  Sum_probs=104.6

Q ss_pred             eeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccC
Q 013056          247 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD  326 (450)
Q Consensus       247 L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~  326 (450)
                      -+.++++++.++....         .+  .++|++|+|++|.++. .+..     +..+++|++|+|++|.+++..+   
T Consensus        12 ~~~l~~~~~~l~~ip~---------~~--~~~l~~L~L~~n~i~~-ip~~-----~~~l~~L~~L~Ls~N~i~~i~~---   71 (193)
T 2wfh_A           12 DTVVRCSNKGLKVLPK---------GI--PRDVTELYLDGNQFTL-VPKE-----LSNYKHLTLIDLSNNRISTLSN---   71 (193)
T ss_dssp             TTEEECTTSCCSSCCS---------CC--CTTCCEEECCSSCCCS-CCGG-----GGGCTTCCEEECCSSCCCCCCT---
T ss_pred             CCEEEcCCCCCCcCCC---------CC--CCCCCEEECCCCcCch-hHHH-----hhcccCCCEEECCCCcCCEeCH---
Confidence            4678999998887332         11  2589999999999975 3333     2457999999999999987544   


Q ss_pred             cccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEE
Q 013056          327 RSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVEL  406 (450)
Q Consensus       327 ~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L  406 (450)
                              ..+..+++|++|+|++|.|+.    ..+..+..+++|++|+|++|.|+.      +|.  ..+..+++|++|
T Consensus        72 --------~~f~~l~~L~~L~Ls~N~l~~----i~~~~f~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~~L  131 (193)
T 2wfh_A           72 --------QSFSNMTQLLTLILSYNRLRC----IPPRTFDGLKSLRLLSLHGNDISV------VPE--GAFNDLSALSHL  131 (193)
T ss_dssp             --------TTTTTCTTCCEEECCSSCCCB----CCTTTTTTCTTCCEEECCSSCCCB------CCT--TTTTTCTTCCEE
T ss_pred             --------hHccCCCCCCEEECCCCccCE----eCHHHhCCCCCCCEEECCCCCCCe------eCh--hhhhcCccccEE
Confidence                    334477999999999999987    234568889999999999999987      442  457788999999


Q ss_pred             EccCCCCChh-HHHHHHHHHhc
Q 013056          407 YLENCELSGR-GVSQLLDTLST  427 (450)
Q Consensus       407 ~L~~n~l~~~-g~~~l~~~l~~  427 (450)
                      +|++|.+... ....+...+..
T Consensus       132 ~L~~N~~~C~c~l~~l~~~~~~  153 (193)
T 2wfh_A          132 AIGANPLYCDCNMQWLSDWVKS  153 (193)
T ss_dssp             ECCSSCEECSGGGHHHHHHHHH
T ss_pred             EeCCCCeecCCcCHHHHHHHHh
Confidence            9999987542 22334444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.30  E-value=1.2e-12  Score=113.97  Aligned_cols=143  Identities=18%  Similarity=0.197  Sum_probs=105.5

Q ss_pred             CeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccccc
Q 013056          246 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY  325 (450)
Q Consensus       246 ~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~  325 (450)
                      ..+.++++++.++.....           ..++|++|++++|.+++..+..     +..+++|++|++++|.+++..+  
T Consensus         8 ~~~~l~~~~~~l~~~p~~-----------~~~~l~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~--   69 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPTG-----------IPSSATRLELESNKLQSLPHGV-----FDKLTQLTKLSLSQNQIQSLPD--   69 (177)
T ss_dssp             ETTEEECCSSCCSSCCTT-----------CCTTCSEEECCSSCCCCCCTTT-----TTTCTTCSEEECCSSCCCCCCT--
T ss_pred             CCCEEEecCCCCccCCCC-----------CCCCCcEEEeCCCcccEeCHHH-----hcCcccccEEECCCCcceEeCh--
Confidence            467889999988773321           2368999999999988643322     2457899999999999886433  


Q ss_pred             CcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCE
Q 013056          326 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVE  405 (450)
Q Consensus       326 ~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~  405 (450)
                               ..+..+++|+.|+|++|.|+.    ..+..+..+++|++|++++|.++.      +|.  ..+..+++|++
T Consensus        70 ---------~~~~~l~~L~~L~l~~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~------~~~--~~~~~l~~L~~  128 (177)
T 2o6r_A           70 ---------GVFDKLTKLTILYLHENKLQS----LPNGVFDKLTQLKELALDTNQLKS------VPD--GIFDRLTSLQK  128 (177)
T ss_dssp             ---------TTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTCCE
T ss_pred             ---------hHccCCCccCEEECCCCCccc----cCHHHhhCCcccCEEECcCCcceE------eCH--HHhcCCcccCE
Confidence                     223467899999999999986    223346789999999999999986      432  44677899999


Q ss_pred             EEccCCCCChhH--HHHHHHHHhc
Q 013056          406 LYLENCELSGRG--VSQLLDTLST  427 (450)
Q Consensus       406 L~L~~n~l~~~g--~~~l~~~l~~  427 (450)
                      |++++|.++...  ...+...+..
T Consensus       129 L~l~~N~~~~~~~~l~~l~~~~~~  152 (177)
T 2o6r_A          129 IWLHTNPWDCSCPRIDYLSRWLNK  152 (177)
T ss_dssp             EECCSSCBCCCHHHHHHHHHHHHH
T ss_pred             EEecCCCeeccCccHHHHHHHHhh
Confidence            999999987642  3445555555

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.28  E-value=3.7e-14  Score=137.59  Aligned_cols=215  Identities=13%  Similarity=0.091  Sum_probs=138.9

Q ss_pred             ccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCe
Q 013056          168 RLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKI  247 (450)
Q Consensus       168 ~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L  247 (450)
                      +-+++.++++|..+  .+++++|+|++|.+.......    +.++++|++|+|++|.+........   +.    .+.++
T Consensus        15 ~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~----f~~l~~L~~L~Ls~N~i~~~i~~~~---f~----~L~~l   81 (350)
T 4ay9_X           15 LCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGA----FSGFGDLEKIEISQNDVLEVIEADV---FS----NLPKL   81 (350)
T ss_dssp             EEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTS----STTCTTCCEEEEECCTTCCEECTTS---BC----SCTTC
T ss_pred             EecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHH----HcCCCCCCEEECcCCCCCCccChhH---hh----cchhh
Confidence            33445555566554  257899999999866543322    5788899999999998754222111   11    14555


Q ss_pred             eE-EEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCC-CCCCccccc
Q 013056          248 EN-LSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN-SIGGWLSKY  325 (450)
Q Consensus       248 ~~-L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~  325 (450)
                      ++ +.++.|+++.        ..+..+..+++|++|++++|.+........     ....++..|++.++ .+....+  
T Consensus        82 ~~~l~~~~N~l~~--------l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~-----~~~~~l~~l~l~~~~~i~~l~~--  146 (350)
T 4ay9_X           82 HEIRIEKANNLLY--------INPEAFQNLPNLQYLLISNTGIKHLPDVHK-----IHSLQKVLLDIQDNINIHTIER--  146 (350)
T ss_dssp             CEEEEEEETTCCE--------ECTTSBCCCTTCCEEEEEEECCSSCCCCTT-----CCBSSCEEEEEESCTTCCEECT--
T ss_pred             hhhhcccCCcccc--------cCchhhhhccccccccccccccccCCchhh-----cccchhhhhhhccccccccccc--
Confidence            54 5666788877        334567788999999999998876322111     22456778888664 4553221  


Q ss_pred             CcccHHHhhhCCCCC-CceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCC-CCCChhhHHHHHHHHHhhcCCCCCc
Q 013056          326 DRSGPLFSLGAGKSL-QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISD-NTIEDDGIRSLIPYFVQASERCNPL  403 (450)
Q Consensus       326 ~~~~l~~~l~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-N~l~~~g~~~l~~~l~~~l~~~~~L  403 (450)
                               ..+..+ ..++.|+|++|+|+.     ++.......+|++|++++ |.++.      +|.  .++..+++|
T Consensus       147 ---------~~f~~~~~~l~~L~L~~N~i~~-----i~~~~f~~~~L~~l~l~~~n~l~~------i~~--~~f~~l~~L  204 (350)
T 4ay9_X          147 ---------NSFVGLSFESVILWLNKNGIQE-----IHNSAFNGTQLDELNLSDNNNLEE------LPN--DVFHGASGP  204 (350)
T ss_dssp             ---------TSSTTSBSSCEEEECCSSCCCE-----ECTTSSTTEEEEEEECTTCTTCCC------CCT--TTTTTEECC
T ss_pred             ---------cchhhcchhhhhhccccccccC-----CChhhccccchhHHhhccCCcccC------CCH--HHhccCccc
Confidence                     122222 468889999999986     666666677899999975 67766      542  567888999


Q ss_pred             CEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCC
Q 013056          404 VELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADN  440 (450)
Q Consensus       404 ~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N  440 (450)
                      ++|+|++|+|+.     ++...   -.+|+.|.+.++
T Consensus       205 ~~LdLs~N~l~~-----lp~~~---~~~L~~L~~l~~  233 (350)
T 4ay9_X          205 VILDISRTRIHS-----LPSYG---LENLKKLRARST  233 (350)
T ss_dssp             SEEECTTSCCCC-----CCSSS---CTTCCEEECTTC
T ss_pred             chhhcCCCCcCc-----cChhh---hccchHhhhccC
Confidence            999999999887     33211   123777776554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.24  E-value=1.2e-11  Score=109.35  Aligned_cols=126  Identities=21%  Similarity=0.201  Sum_probs=93.5

Q ss_pred             cEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHH
Q 013056          216 ASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGR  295 (450)
Q Consensus       216 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  295 (450)
                      +.++++++.++...     ..   .   ..+|++|++++|.++.         ++..+..+++|++|+|++|.+++..+.
T Consensus        13 ~~l~~~~~~l~~ip-----~~---~---~~~l~~L~L~~n~i~~---------ip~~~~~l~~L~~L~Ls~N~i~~i~~~   72 (193)
T 2wfh_A           13 TVVRCSNKGLKVLP-----KG---I---PRDVTELYLDGNQFTL---------VPKELSNYKHLTLIDLSNNRISTLSNQ   72 (193)
T ss_dssp             TEEECTTSCCSSCC-----SC---C---CTTCCEEECCSSCCCS---------CCGGGGGCTTCCEEECCSSCCCCCCTT
T ss_pred             CEEEcCCCCCCcCC-----CC---C---CCCCCEEECCCCcCch---------hHHHhhcccCCCEEECCCCcCCEeCHh
Confidence            57888888877321     11   1   3678999999998876         335677888999999999988874443


Q ss_pred             HHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHH-HhhcCCCCCEE
Q 013056          296 MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEIL  374 (450)
Q Consensus       296 ~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L  374 (450)
                      .+     ..+++|++|+|++|.+++..+           ..+..+++|+.|+|++|.|+.     ++. .+..+++|+.|
T Consensus        73 ~f-----~~l~~L~~L~Ls~N~l~~i~~-----------~~f~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L  131 (193)
T 2wfh_A           73 SF-----SNMTQLLTLILSYNRLRCIPP-----------RTFDGLKSLRLLSLHGNDISV-----VPEGAFNDLSALSHL  131 (193)
T ss_dssp             TT-----TTCTTCCEEECCSSCCCBCCT-----------TTTTTCTTCCEEECCSSCCCB-----CCTTTTTTCTTCCEE
T ss_pred             Hc-----cCCCCCCEEECCCCccCEeCH-----------HHhCCCCCCCEEECCCCCCCe-----eChhhhhcCccccEE
Confidence            33     457889999999999887544           233467889999999999886     444 47788899999


Q ss_pred             ecCCCCCC
Q 013056          375 DISDNTIE  382 (450)
Q Consensus       375 ~Ls~N~l~  382 (450)
                      +|++|.+.
T Consensus       132 ~L~~N~~~  139 (193)
T 2wfh_A          132 AIGANPLY  139 (193)
T ss_dssp             ECCSSCEE
T ss_pred             EeCCCCee
Confidence            99999874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.23  E-value=1.7e-11  Score=106.60  Aligned_cols=129  Identities=15%  Similarity=0.133  Sum_probs=78.5

Q ss_pred             ccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHH
Q 013056          215 LASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFG  294 (450)
Q Consensus       215 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  294 (450)
                      .+.++++++.++...     ..   .   ..+|++|++++|.++.        .....+..+++|++|++++|.+++..+
T Consensus         9 ~~~l~~~~~~l~~~p-----~~---~---~~~l~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~   69 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVP-----TG---I---PSSATRLELESNKLQS--------LPHGVFDKLTQLTKLSLSQNQIQSLPD   69 (177)
T ss_dssp             TTEEECCSSCCSSCC-----TT---C---CTTCSEEECCSSCCCC--------CCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred             CCEEEecCCCCccCC-----CC---C---CCCCcEEEeCCCcccE--------eCHHHhcCcccccEEECCCCcceEeCh
Confidence            456777777666311     00   1   3567777777777765        223345566777777777777765322


Q ss_pred             HHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHH-hhcCCCCCE
Q 013056          295 RMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSA-LVHIPNLEI  373 (450)
Q Consensus       295 ~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~  373 (450)
                      ..     +..+++|++|++++|.+++..+           ..+..+++|+.|++++|.++.     ++.. +..+++|++
T Consensus        70 ~~-----~~~l~~L~~L~l~~N~l~~~~~-----------~~~~~l~~L~~L~l~~N~l~~-----~~~~~~~~l~~L~~  128 (177)
T 2o6r_A           70 GV-----FDKLTKLTILYLHENKLQSLPN-----------GVFDKLTQLKELALDTNQLKS-----VPDGIFDRLTSLQK  128 (177)
T ss_dssp             TT-----TTTCTTCCEEECCSSCCCCCCT-----------TTTTTCTTCCEEECCSSCCSC-----CCTTTTTTCTTCCE
T ss_pred             hH-----ccCCCccCEEECCCCCccccCH-----------HHhhCCcccCEEECcCCcceE-----eCHHHhcCCcccCE
Confidence            21     2346777777777777775332           122355677777777777764     3333 456777777


Q ss_pred             EecCCCCCCh
Q 013056          374 LDISDNTIED  383 (450)
Q Consensus       374 L~Ls~N~l~~  383 (450)
                      |+|++|.++.
T Consensus       129 L~l~~N~~~~  138 (177)
T 2o6r_A          129 IWLHTNPWDC  138 (177)
T ss_dssp             EECCSSCBCC
T ss_pred             EEecCCCeec
Confidence            7777777754

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.17  E-value=1.7e-13  Score=121.70  Aligned_cols=139  Identities=25%  Similarity=0.259  Sum_probs=105.1

Q ss_pred             hhcCCCCCCEEecCCCCCChhHHH------HHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeE
Q 013056          272 FLSSGRSLCSLKLRHCHLDRDFGR------MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRL  345 (450)
Q Consensus       272 ~l~~~~~L~~L~Ls~n~l~~~~~~------~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~  345 (450)
                      .+.....++.++++.+.+.+..+.      .+     ..+++|++|++++|.+++         +| .+.   .+++|+.
T Consensus        13 ~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~-----~~l~~L~~L~ls~n~l~~---------l~-~~~---~l~~L~~   74 (198)
T 1ds9_A           13 IFEERKSVVATEAEKVELHGMIPPIEKMDATL-----STLKACKHLALSTNNIEK---------IS-SLS---GMENLRI   74 (198)
T ss_dssp             HHHHTTCCCCTTCSEEECCBCCTTCCCCHHHH-----HHTTTCSEEECSEEEESC---------CC-CHH---HHTTCCE
T ss_pred             HHHhcccccCcchheeEeccccCcHhhhhHHH-----hcCCCCCEEECCCCCCcc---------cc-ccc---cCCCCCE
Confidence            345566777777777766665433      44     237999999999999886         33 334   4589999


Q ss_pred             EEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHH
Q 013056          346 LNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTL  425 (450)
Q Consensus       346 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l  425 (450)
                      |++++|.|+.     +|..+..+++|++|++++|++++      +|.    +..+++|++|++++|.|+..+.   ...+
T Consensus        75 L~l~~n~l~~-----l~~~~~~~~~L~~L~L~~N~l~~------l~~----~~~l~~L~~L~l~~N~i~~~~~---~~~l  136 (198)
T 1ds9_A           75 LSLGRNLIKK-----IENLDAVADTLEELWISYNQIAS------LSG----IEKLVNLRVLYMSNNKITNWGE---IDKL  136 (198)
T ss_dssp             EEEEEEEECS-----CSSHHHHHHHCSEEEEEEEECCC------HHH----HHHHHHSSEEEESEEECCCHHH---HHHH
T ss_pred             EECCCCCccc-----ccchhhcCCcCCEEECcCCcCCc------CCc----cccCCCCCEEECCCCcCCchhH---HHHH
Confidence            9999999985     67777778999999999999987      443    3445899999999999998432   1356


Q ss_pred             hcCCCCCcEEECcCCCCCcccc
Q 013056          426 STLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       426 ~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                      ..+ .+|++|++++|++++..|
T Consensus       137 ~~l-~~L~~L~l~~N~l~~~~~  157 (198)
T 1ds9_A          137 AAL-DKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             TTT-TTCSEEEECSCHHHHHHH
T ss_pred             hcC-CCCCEEEecCCccccccc
Confidence            664 449999999999977644

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.17  E-value=3.3e-12  Score=122.67  Aligned_cols=104  Identities=15%  Similarity=0.143  Sum_probs=75.0

Q ss_pred             CCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCC-EEecCCCCCC
Q 013056          304 ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLE-ILDISDNTIE  382 (450)
Q Consensus       304 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~-~L~Ls~N~l~  382 (450)
                      .+++|+.|+|++|.++...+           ..|.+|.+|+.|+|..| ++.-+    ..+|..+++|+ .+++.+ .++
T Consensus       224 ~~~~L~~l~L~~n~i~~I~~-----------~aF~~~~~L~~l~l~~n-i~~I~----~~aF~~~~~L~~~l~l~~-~l~  286 (329)
T 3sb4_A          224 YMPNLVSLDISKTNATTIPD-----------FTFAQKKYLLKIKLPHN-LKTIG----QRVFSNCGRLAGTLELPA-SVT  286 (329)
T ss_dssp             HCTTCCEEECTTBCCCEECT-----------TTTTTCTTCCEEECCTT-CCEEC----TTTTTTCTTCCEEEEECT-TCC
T ss_pred             hcCCCeEEECCCCCcceecH-----------hhhhCCCCCCEEECCcc-cceeh----HHHhhCChhccEEEEEcc-cce
Confidence            37899999999988876443           44557889999999887 66521    34578888999 999987 565


Q ss_pred             hhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEEC
Q 013056          383 DDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSI  437 (450)
Q Consensus       383 ~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L  437 (450)
                      .      ++.  .+|..|++|+.|++++|.++..+    ..++.. ..+|+.++.
T Consensus       287 ~------I~~--~aF~~c~~L~~l~l~~n~i~~I~----~~aF~~-~~~L~~ly~  328 (329)
T 3sb4_A          287 A------IEF--GAFMGCDNLRYVLATGDKITTLG----DELFGN-GVPSKLIYK  328 (329)
T ss_dssp             E------ECT--TTTTTCTTEEEEEECSSCCCEEC----TTTTCT-TCCCCEEEC
T ss_pred             E------Ech--hhhhCCccCCEEEeCCCccCccc----hhhhcC-Ccchhhhcc
Confidence            4      222  67888899999999999888752    234555 344887753

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.14  E-value=4.4e-11  Score=102.60  Aligned_cols=103  Identities=16%  Similarity=0.188  Sum_probs=77.9

Q ss_pred             CCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCC-CCChhhHHHHHHHhhcCCCCCEEecCCC-CCCh
Q 013056          306 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN-NLCKADARDLGSALVHIPNLEILDISDN-TIED  383 (450)
Q Consensus       306 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~N-~l~~  383 (450)
                      ..|+.||+++|.+++           .++..+..|++|++|+|++| .|++.|++.|...-..+++|++|+|++| +|||
T Consensus        61 ~~L~~LDLs~~~Itd-----------~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           61 YKIQAIDATDSCIMS-----------IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD  129 (176)
T ss_dssp             CCEEEEEEESCCCCG-----------GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred             ceEeEEeCcCCCccH-----------HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence            568999999998886           44555567899999999999 6999998877542112357999999997 5999


Q ss_pred             hhHHHHHHHHHhhcCCCCCcCEEEccCCC-CChhH--HHHHHHHHhc
Q 013056          384 DGIRSLIPYFVQASERCNPLVELYLENCE-LSGRG--VSQLLDTLST  427 (450)
Q Consensus       384 ~g~~~l~~~l~~~l~~~~~L~~L~L~~n~-l~~~g--~~~l~~~l~~  427 (450)
                      .|+.++.        .+++|++|+|++|. +|+.|  +..+-+.+..
T Consensus       130 ~Gl~~L~--------~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~  168 (176)
T 3e4g_A          130 KGIIALH--------HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPS  168 (176)
T ss_dssp             HHHHHGG--------GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTT
T ss_pred             HHHHHHh--------cCCCCCEEECCCCCCCCchHHHHHHHHHHCCC
Confidence            9987762        35899999999996 88866  3445555444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.12  E-value=4.6e-11  Score=103.21  Aligned_cols=118  Identities=21%  Similarity=0.211  Sum_probs=78.5

Q ss_pred             CCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhh
Q 013056          278 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKAD  357 (450)
Q Consensus       278 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~  357 (450)
                      +.+.+++++|.++. .+..+       ..+|++|+|++|.+++..+        ..   +..+++|++|+|++|+|+.  
T Consensus        10 ~~~~l~~s~n~l~~-ip~~~-------~~~l~~L~L~~N~i~~~~~--------~~---~~~l~~L~~L~Ls~N~l~~--   68 (170)
T 3g39_A           10 SGTTVDCSGKSLAS-VPTGI-------PTTTQVLYLYDNQITKLEP--------GV---FDRLTQLTRLDLDNNQLTV--   68 (170)
T ss_dssp             ETTEEECTTSCCSS-CCSCC-------CTTCSEEECCSSCCCCCCT--------TT---TTTCTTCSEEECCSSCCCC--
T ss_pred             CCCEEEeCCCCcCc-cCccC-------CCCCcEEEcCCCcCCccCh--------hh---hcCcccCCEEECCCCCcCc--
Confidence            34677777777665 33322       3677888888887776444        22   3356778888888888875  


Q ss_pred             HHHHHH-HhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChh--HHHHHHHHHhc
Q 013056          358 ARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR--GVSQLLDTLST  427 (450)
Q Consensus       358 ~~~l~~-~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~--g~~~l~~~l~~  427 (450)
                         ++. .+..+++|++|+|++|+|+.      ++.  ..+..+++|++|+|++|.++..  .+..+...+..
T Consensus        69 ---l~~~~f~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~  130 (170)
T 3g39_A           69 ---LPAGVFDKLTQLTQLSLNDNQLKS------IPR--GAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQ  130 (170)
T ss_dssp             ---CCTTTTTTCTTCCEEECCSSCCCC------CCT--TTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHH
T ss_pred             ---cChhhccCCCCCCEEECCCCccCE------eCH--HHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHh
Confidence               443 35678888888888888876      331  3467778888888888887654  34555666655

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.10  E-value=2.9e-11  Score=104.41  Aligned_cols=109  Identities=20%  Similarity=0.283  Sum_probs=87.4

Q ss_pred             CCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhH
Q 013056          307 SLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGI  386 (450)
Q Consensus       307 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~  386 (450)
                      +.+++++++|.++.         +|..+.     ++|+.|+|++|.|+.    ..+..+..+++|++|+|++|+|+.   
T Consensus        10 ~~~~l~~s~n~l~~---------ip~~~~-----~~l~~L~L~~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~---   68 (170)
T 3g39_A           10 SGTTVDCSGKSLAS---------VPTGIP-----TTTQVLYLYDNQITK----LEPGVFDRLTQLTRLDLDNNQLTV---   68 (170)
T ss_dssp             ETTEEECTTSCCSS---------CCSCCC-----TTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCC---
T ss_pred             CCCEEEeCCCCcCc---------cCccCC-----CCCcEEEcCCCcCCc----cChhhhcCcccCCEEECCCCCcCc---
Confidence            57899999999886         333332     789999999999997    236678899999999999999987   


Q ss_pred             HHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 013056          387 RSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC  446 (450)
Q Consensus       387 ~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~  446 (450)
                         ++.  ..+..+++|++|+|++|+|+..    ....+..+ .+|++|+|++|++....
T Consensus        69 ---l~~--~~f~~l~~L~~L~L~~N~l~~~----~~~~~~~l-~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           69 ---LPA--GVFDKLTQLTQLSLNDNQLKSI----PRGAFDNL-KSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             ---CCT--TTTTTCTTCCEEECCSSCCCCC----CTTTTTTC-TTCCEEECCSSCBCTTB
T ss_pred             ---cCh--hhccCCCCCCEEECCCCccCEe----CHHHhcCC-CCCCEEEeCCCCCCCCc
Confidence               442  4578889999999999999873    23346664 44999999999998654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.05  E-value=6e-11  Score=102.87  Aligned_cols=118  Identities=19%  Similarity=0.225  Sum_probs=92.5

Q ss_pred             CCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhh
Q 013056          278 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKAD  357 (450)
Q Consensus       278 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~  357 (450)
                      .-+.+++++|.++. .|..+       ..+|++|+|++|.+.+..+        ..   +..+++|+.|+|++|+|+.  
T Consensus        13 ~~~~l~~~~n~l~~-iP~~~-------~~~L~~L~Ls~N~l~~~~~--------~~---~~~l~~L~~L~Ls~N~l~~--   71 (174)
T 2r9u_A           13 DQTLVNCQNIRLAS-VPAGI-------PTDKQRLWLNNNQITKLEP--------GV---FDHLVNLQQLYFNSNKLTA--   71 (174)
T ss_dssp             CSSEEECCSSCCSS-CCSCC-------CTTCSEEECCSSCCCCCCT--------TT---TTTCTTCCEEECCSSCCCC--
T ss_pred             CCcEEEeCCCCCCc-cCCCc-------CCCCcEEEeCCCCccccCH--------HH---hcCCcCCCEEECCCCCCCc--
Confidence            34889999999976 55433       4889999999999997544        33   3467899999999999996  


Q ss_pred             HHHHHHH-hhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChh--HHHHHHHHHhc
Q 013056          358 ARDLGSA-LVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR--GVSQLLDTLST  427 (450)
Q Consensus       358 ~~~l~~~-l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~--g~~~l~~~l~~  427 (450)
                         ++.. +..+++|++|+|++|+|+.      +|.  ..+..+++|++|+|++|.+...  .+..+...+..
T Consensus        72 ---i~~~~~~~l~~L~~L~L~~N~l~~------l~~--~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~  133 (174)
T 2r9u_A           72 ---IPTGVFDKLTQLTQLDLNDNHLKS------IPR--GAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVAD  133 (174)
T ss_dssp             ---CCTTTTTTCTTCCEEECCSSCCCC------CCT--TTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHH
T ss_pred             ---cChhHhCCcchhhEEECCCCccce------eCH--HHhccccCCCEEEeCCCCcccccccHHHHHHHHHh
Confidence               5554 5789999999999999987      442  4578889999999999998754  34455666655

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.03  E-value=1.3e-10  Score=100.73  Aligned_cols=105  Identities=14%  Similarity=0.104  Sum_probs=81.2

Q ss_pred             eeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccC
Q 013056          247 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD  326 (450)
Q Consensus       247 L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~  326 (450)
                      -+.+++++|.++...         ..+  .++|++|+|++|.+++..+..+     ..+++|++|+|++|.+++..+   
T Consensus        14 ~~~l~~~~n~l~~iP---------~~~--~~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~i~~---   74 (174)
T 2r9u_A           14 QTLVNCQNIRLASVP---------AGI--PTDKQRLWLNNNQITKLEPGVF-----DHLVNLQQLYFNSNKLTAIPT---   74 (174)
T ss_dssp             SSEEECCSSCCSSCC---------SCC--CTTCSEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSSCCCCCCT---
T ss_pred             CcEEEeCCCCCCccC---------CCc--CCCCcEEEeCCCCccccCHHHh-----cCCcCCCEEECCCCCCCccCh---
Confidence            478899999987732         222  2789999999999987544433     457899999999999987433   


Q ss_pred             cccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHH-HhhcCCCCCEEecCCCCCCh
Q 013056          327 RSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIED  383 (450)
Q Consensus       327 ~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~~  383 (450)
                              ..+..+++|+.|+|++|+|+.     ++. .+..+++|++|+|++|.+..
T Consensus        75 --------~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           75 --------GVFDKLTQLTQLDLNDNHLKS-----IPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             --------TTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             --------hHhCCcchhhEEECCCCccce-----eCHHHhccccCCCEEEeCCCCccc
Confidence                    223467899999999999986     555 47889999999999999864

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.89  E-value=1.4e-10  Score=111.30  Aligned_cols=182  Identities=12%  Similarity=0.053  Sum_probs=118.8

Q ss_pred             CCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCC------
Q 013056          184 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSF------  257 (450)
Q Consensus       184 ~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i------  257 (450)
                      +++|++|+|.+ .+......    .+.+|++|+.|++++|.+...+..++..        +.++..+.++....      
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~----aF~~~~~L~~l~l~~n~i~~i~~~aF~~--------~~~l~~l~~~~~~~~~~~~~  166 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDA----AFKGCDNLKICQIRKKTAPNLLPEALAD--------SVTAIFIPLGSSDAYRFKNR  166 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTT----TTTTCTTCCEEEBCCSSCCEECTTSSCT--------TTCEEEECTTCTHHHHTSTT
T ss_pred             cCCCcEEECCc-cccchhHH----HhhcCcccceEEcCCCCccccchhhhcC--------CCceEEecCcchhhhhcccc
Confidence            78999999987 43332222    2678889999999988775444333322        34455554443110      


Q ss_pred             -CCC---------------CchhhHH------------------------HHHHhhcCCCCCCEEecCCCCCChhHHHHH
Q 013056          258 -IEN---------------CPSSVVV------------------------ELVSFLSSGRSLCSLKLRHCHLDRDFGRMV  297 (450)
Q Consensus       258 -~~~---------------~~~~~~~------------------------~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l  297 (450)
                       ...               ....+.+                        ........+++|++|+|++|+++..+... 
T Consensus       167 i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~a-  245 (329)
T 3sb4_A          167 WEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFT-  245 (329)
T ss_dssp             TTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTT-
T ss_pred             ccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhh-
Confidence             000               0000000                        11122224899999999999887743332 


Q ss_pred             HHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCcee-EEEccCCCCChhhHHHHHHHhhcCCCCCEEec
Q 013056          298 FSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR-LLNLRGNNLCKADARDLGSALVHIPNLEILDI  376 (450)
Q Consensus       298 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L  376 (450)
                          +..+.+|+.|+|..| +....+           ..|.+|.+|+ .+++.. +++.-+    +.+|..+++|+.|++
T Consensus       246 ----F~~~~~L~~l~l~~n-i~~I~~-----------~aF~~~~~L~~~l~l~~-~l~~I~----~~aF~~c~~L~~l~l  304 (329)
T 3sb4_A          246 ----FAQKKYLLKIKLPHN-LKTIGQ-----------RVFSNCGRLAGTLELPA-SVTAIE----FGAFMGCDNLRYVLA  304 (329)
T ss_dssp             ----TTTCTTCCEEECCTT-CCEECT-----------TTTTTCTTCCEEEEECT-TCCEEC----TTTTTTCTTEEEEEE
T ss_pred             ----hhCCCCCCEEECCcc-cceehH-----------HHhhCChhccEEEEEcc-cceEEc----hhhhhCCccCCEEEe
Confidence                456899999999998 654333           4556889999 999988 666521    356889999999999


Q ss_pred             CCCCCChhhHHHHHHHHHhhcCCCCCcCEEEc
Q 013056          377 SDNTIEDDGIRSLIPYFVQASERCNPLVELYL  408 (450)
Q Consensus       377 s~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L  408 (450)
                      ++|.++.      ++.  .+|..+++|+.++.
T Consensus       305 ~~n~i~~------I~~--~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          305 TGDKITT------LGD--ELFGNGVPSKLIYK  328 (329)
T ss_dssp             CSSCCCE------ECT--TTTCTTCCCCEEEC
T ss_pred             CCCccCc------cch--hhhcCCcchhhhcc
Confidence            9999877      432  67899999999863

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.80  E-value=3.4e-09  Score=90.81  Aligned_cols=40  Identities=23%  Similarity=0.274  Sum_probs=23.2

Q ss_pred             ceeEEEccCC-CCChhhHHHHHHHhhcCCCCCEEecCCC-CCChhh
Q 013056          342 SLRLLNLRGN-NLCKADARDLGSALVHIPNLEILDISDN-TIEDDG  385 (450)
Q Consensus       342 ~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~N-~l~~~g  385 (450)
                      +|+.|+|++| +||+.|+..    +.++++|++|+|+++ .+++.|
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl~~----L~~~~~L~~L~L~~c~~Itd~g  156 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGIIA----LHHFRNLKYLFLSDLPGVKEKE  156 (176)
T ss_dssp             HCCEEEEESCTTCCHHHHHH----GGGCTTCCEEEEESCTTCCCHH
T ss_pred             CCCEEEcCCCCcCCHHHHHH----HhcCCCCCEEECCCCCCCCchH
Confidence            4566666665 466666544    334566666666665 356655

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.69  E-value=5.8e-09  Score=100.57  Aligned_cols=116  Identities=21%  Similarity=0.215  Sum_probs=85.8

Q ss_pred             CEEecCCC-CCChhHHHHHHHHHhhCCCCCcEEeccC-CCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhh
Q 013056          280 CSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSG-NSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKAD  357 (450)
Q Consensus       280 ~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~-n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~  357 (450)
                      ..++.+++ .++. .|. +     ..+.+|++|+|++ |.+++..+        ..+   ..+++|+.|+|++|+|+.  
T Consensus        11 ~~v~~~~~n~l~~-ip~-l-----~~~~~L~~L~l~~~n~l~~~~~--------~~~---~~l~~L~~L~l~~N~l~~--   70 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-L-----PGAENLTELYIENQQHLQHLEL--------RDL---RGLGELRNLTIVKSGLRF--   70 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-S-----CSCSCCSEEECCSCSSCCEECG--------GGS---CSCCCCSEEECCSSCCCE--
T ss_pred             CEEEcCCCCCCCc-cCC-C-----CCCCCeeEEEccCCCCCCCcCh--------hHh---ccccCCCEEECCCCccce--
Confidence            56789888 8877 554 4     4578899999996 99987444        334   467999999999999997  


Q ss_pred             HHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhH-HHHHHHHHh
Q 013056          358 ARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG-VSQLLDTLS  426 (450)
Q Consensus       358 ~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g-~~~l~~~l~  426 (450)
                        ..+..|..+++|+.|+|++|+|+.      +|.  ..+..++ |+.|+|++|.+.... ...+...+.
T Consensus        71 --~~~~~~~~l~~L~~L~l~~N~l~~------~~~--~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~  129 (347)
T 2ifg_A           71 --VAPDAFHFTPRLSRLNLSFNALES------LSW--KTVQGLS-LQELVLSGNPLHCSCALRWLQRWEE  129 (347)
T ss_dssp             --ECTTGGGSCSCCCEEECCSSCCSC------CCS--TTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHH
T ss_pred             --eCHHHhcCCcCCCEEeCCCCccce------eCH--HHcccCC-ceEEEeeCCCccCCCccHHHHHHHH
Confidence              345578899999999999999987      442  3444444 999999999987532 233444443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.67  E-value=1.3e-08  Score=98.08  Aligned_cols=105  Identities=21%  Similarity=0.115  Sum_probs=81.6

Q ss_pred             eEEEcCCC-CCCCCCchhhHHHHHHhhcCCCCCCEEecCC-CCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccccc
Q 013056          248 ENLSIDIS-SFIENCPSSVVVELVSFLSSGRSLCSLKLRH-CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY  325 (450)
Q Consensus       248 ~~L~L~~n-~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~  325 (450)
                      ..++.+++ .++.         ++. +..+++|++|+|++ |.++...+..+     ..+++|++|+|++|.|++..+  
T Consensus        11 ~~v~~~~~n~l~~---------ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~-----~~l~~L~~L~l~~N~l~~~~~--   73 (347)
T 2ifg_A           11 SGLRCTRDGALDS---------LHH-LPGAENLTELYIENQQHLQHLELRDL-----RGLGELRNLTIVKSGLRFVAP--   73 (347)
T ss_dssp             SCEECCSSCCCTT---------TTT-SCSCSCCSEEECCSCSSCCEECGGGS-----CSCCCCSEEECCSSCCCEECT--
T ss_pred             CEEEcCCCCCCCc---------cCC-CCCCCCeeEEEccCCCCCCCcChhHh-----ccccCCCEEECCCCccceeCH--
Confidence            45688887 7776         555 88889999999996 99987544333     558999999999999997544  


Q ss_pred             CcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCCh
Q 013056          326 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED  383 (450)
Q Consensus       326 ~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~  383 (450)
                            ..+.   .+++|+.|+|++|+|+.     +|..+.....|+.|+|++|.+.-
T Consensus        74 ------~~~~---~l~~L~~L~l~~N~l~~-----~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           74 ------DAFH---FTPRLSRLNLSFNALES-----LSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             ------TGGG---SCSCCCEEECCSSCCSC-----CCSTTTCSCCCCEEECCSSCCCC
T ss_pred             ------HHhc---CCcCCCEEeCCCCccce-----eCHHHcccCCceEEEeeCCCccC
Confidence                  4445   67899999999999986     55544444449999999999863

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.62  E-value=6.7e-09  Score=102.17  Aligned_cols=223  Identities=10%  Similarity=0.064  Sum_probs=126.4

Q ss_pred             chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056          163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  242 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~  242 (450)
                      .++.+.+.++ +..+....+...+|+.+.+..+- ....    ...+.+|++|+.+++++|.++.....++.        
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~~l-~~I~----~~aF~~c~~L~~l~l~~n~l~~I~~~aF~--------  201 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPSTL-EQLK----EDIFYYCYNLKKADLSKTKITKLPASTFV--------  201 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTCCCCEEECCTTC-CEEC----SSTTTTCTTCCEEECTTSCCSEECTTTTT--------
T ss_pred             CccEEEeCCC-ccEECHHhcCCCCceEEEeCCCc-cEeh----HHHhhCcccCCeeecCCCcceEechhhEe--------
Confidence            4444455443 33444444434568888886532 1111    11256788888888888777654433332        


Q ss_pred             CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056          243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  322 (450)
Q Consensus       243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  322 (450)
                       +.+|+.+.+..+ ++..        -...|.++++|+.+++..+ ++..+...     +.. ++|+.+.+.. .+....
T Consensus       202 -~~~L~~l~lp~~-l~~I--------~~~aF~~~~~L~~l~l~~~-l~~I~~~a-----F~~-~~L~~i~lp~-~i~~I~  263 (401)
T 4fdw_A          202 -YAGIEEVLLPVT-LKEI--------GSQAFLKTSQLKTIEIPEN-VSTIGQEA-----FRE-SGITTVKLPN-GVTNIA  263 (401)
T ss_dssp             -TCCCSEEECCTT-CCEE--------CTTTTTTCTTCCCEECCTT-CCEECTTT-----TTT-CCCSEEEEET-TCCEEC
T ss_pred             -ecccCEEEeCCc-hhee--------hhhHhhCCCCCCEEecCCC-ccCccccc-----ccc-CCccEEEeCC-CccEEC
Confidence             467888888744 4442        2235667788888888764 33322222     233 6788887743 333322


Q ss_pred             cccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHH-HHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCC
Q 013056          323 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDL-GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN  401 (450)
Q Consensus       323 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~  401 (450)
                      .           ..|.+|++|+.+++.+|.+.......+ ..++..+++|+.++|.. .++.      ++.  .+|..|.
T Consensus       264 ~-----------~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~------I~~--~aF~~c~  323 (401)
T 4fdw_A          264 S-----------RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRI------LGQ--GLLGGNR  323 (401)
T ss_dssp             T-----------TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCE------ECT--TTTTTCC
T ss_pred             h-----------hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEE------Ehh--hhhcCCC
Confidence            2           344567788888887776541111011 23566777888888873 3544      221  5677777


Q ss_pred             CcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056          402 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  444 (450)
Q Consensus       402 ~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~  444 (450)
                      +|+.++|..+ ++..+    ..++..+  +|+.+++.+|.+..
T Consensus       324 ~L~~l~lp~~-l~~I~----~~aF~~~--~L~~l~l~~n~~~~  359 (401)
T 4fdw_A          324 KVTQLTIPAN-VTQIN----FSAFNNT--GIKEVKVEGTTPPQ  359 (401)
T ss_dssp             SCCEEEECTT-CCEEC----TTSSSSS--CCCEEEECCSSCCB
T ss_pred             CccEEEECcc-ccEEc----HHhCCCC--CCCEEEEcCCCCcc
Confidence            8888888544 54432    2234442  48888887776543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.43  E-value=1.6e-08  Score=99.40  Aligned_cols=224  Identities=8%  Similarity=0.023  Sum_probs=142.4

Q ss_pred             chhhcccccCcchhhhHh-hhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056          163 YARCLRLQNALCVEETCQ-LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  241 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~-l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~  241 (450)
                      .++.+.+.+ .+..+... +.+|.+|+.+++++|.+.......    +. +.+|+.+.|..+ +...+..++..      
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~a----F~-~~~L~~l~lp~~-l~~I~~~aF~~------  224 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAST----FV-YAGIEEVLLPVT-LKEIGSQAFLK------  224 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTT----TT-TCCCSEEECCTT-CCEECTTTTTT------
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhh----Ee-ecccCEEEeCCc-hheehhhHhhC------
Confidence            455555554 33344433 448899999999988755443332    33 579999999855 55444334433      


Q ss_pred             cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCc
Q 013056          242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW  321 (450)
Q Consensus       242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~  321 (450)
                        |.+|+.+.+..+ ++..+.        .+|.+ .+|+.+.+.. .+...+..     .+..|.+|+.+++.+|.+...
T Consensus       225 --~~~L~~l~l~~~-l~~I~~--------~aF~~-~~L~~i~lp~-~i~~I~~~-----aF~~c~~L~~l~l~~~~~~~~  286 (401)
T 4fdw_A          225 --TSQLKTIEIPEN-VSTIGQ--------EAFRE-SGITTVKLPN-GVTNIASR-----AFYYCPELAEVTTYGSTFNDD  286 (401)
T ss_dssp             --CTTCCCEECCTT-CCEECT--------TTTTT-CCCSEEEEET-TCCEECTT-----TTTTCTTCCEEEEESSCCCCC
T ss_pred             --CCCCCEEecCCC-ccCccc--------ccccc-CCccEEEeCC-CccEEChh-----HhhCCCCCCEEEeCCccccCC
Confidence              788999999875 444222        23334 7899999954 44442222     245689999999998876410


Q ss_pred             ccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCC
Q 013056          322 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN  401 (450)
Q Consensus       322 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~  401 (450)
                      .    ...++.  ..|..|++|+.++|.. .++.-+    ..++..+++|+.++|..| ++.      ++.  .+|..+ 
T Consensus       287 ~----~~~I~~--~aF~~c~~L~~l~l~~-~i~~I~----~~aF~~c~~L~~l~lp~~-l~~------I~~--~aF~~~-  345 (401)
T 4fdw_A          287 P----EAMIHP--YCLEGCPKLARFEIPE-SIRILG----QGLLGGNRKVTQLTIPAN-VTQ------INF--SAFNNT-  345 (401)
T ss_dssp             T----TCEECT--TTTTTCTTCCEECCCT-TCCEEC----TTTTTTCCSCCEEEECTT-CCE------ECT--TSSSSS-
T ss_pred             c----ccEECH--HHhhCCccCCeEEeCC-ceEEEh----hhhhcCCCCccEEEECcc-ccE------EcH--HhCCCC-
Confidence            0    000101  4455889999999984 466522    245778899999999765 544      221  678888 


Q ss_pred             CcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCC
Q 013056          402 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL  442 (450)
Q Consensus       402 ~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l  442 (450)
                      +|+.+++++|.+...    ....+..++.+++.|.+..+.+
T Consensus       346 ~L~~l~l~~n~~~~l----~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          346 GIKEVKVEGTTPPQV----FEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             CCCEEEECCSSCCBC----CCSSCCCSCTTCCEEEECGGGH
T ss_pred             CCCEEEEcCCCCccc----ccccccCCCCCccEEEeCHHHH
Confidence            999999999987663    1233445445688888876543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.20  E-value=1.1e-06  Score=80.75  Aligned_cols=84  Identities=23%  Similarity=0.192  Sum_probs=39.9

Q ss_pred             EecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHH
Q 013056          282 LKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDL  361 (450)
Q Consensus       282 L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l  361 (450)
                      ++++.|...  ....+......++++|++|+|++|.+++..+      ++..+.   .+++|+.|+|++|+|++.     
T Consensus       148 l~l~~N~~~--~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~------l~~~~~---~l~~L~~L~Ls~N~i~~~-----  211 (267)
T 3rw6_A          148 IDVVLNRRS--CMAATLRIIEENIPELLSLNLSNNRLYRLDD------MSSIVQ---KAPNLKILNLSGNELKSE-----  211 (267)
T ss_dssp             CCCCTTSHH--HHHHHHHHHHHHCTTCCEEECTTSCCCCCGG------GTTHHH---HSTTCCEEECTTSCCCSG-----
T ss_pred             ccccCCHHH--HHHHHHHHHHhhCCCCCEEECCCCCCCCCcc------chhHHh---hCCCCCEEECCCCccCCc-----
Confidence            455555421  2222333333446777777777777765211      222223   235555555555555541     


Q ss_pred             HHHhhcCC--CCCEEecCCCCCC
Q 013056          362 GSALVHIP--NLEILDISDNTIE  382 (450)
Q Consensus       362 ~~~l~~~~--~L~~L~Ls~N~l~  382 (450)
                       ..+..++  +|++|+|++|.+.
T Consensus       212 -~~l~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          212 -RELDKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             -GGGGGGTTSCCSEEECTTSTTG
T ss_pred             -hhhhhcccCCcceEEccCCcCc
Confidence             1122222  5555555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.11  E-value=8.3e-06  Score=74.93  Aligned_cols=86  Identities=34%  Similarity=0.441  Sum_probs=61.2

Q ss_pred             cCCCCCCEEecCCCCCCh--hHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCC
Q 013056          274 SSGRSLCSLKLRHCHLDR--DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN  351 (450)
Q Consensus       274 ~~~~~L~~L~Ls~n~l~~--~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n  351 (450)
                      ..+++|++|+|++|++++  ..+..+     ..+++|+.|+|++|.+.+.          ..+..+..+ +|++|+|++|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~-----~~l~~L~~L~Ls~N~i~~~----------~~l~~l~~l-~L~~L~L~~N  230 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIV-----QKAPNLKILNLSGNELKSE----------RELDKIKGL-KLEELWLDGN  230 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHH-----HHSTTCCEEECTTSCCCSG----------GGGGGGTTS-CCSEEECTTS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHH-----hhCCCCCEEECCCCccCCc----------hhhhhcccC-CcceEEccCC
Confidence            467889999999998876  222222     2378999999999999873          234444445 8999999999


Q ss_pred             CCChh---hHHHHHHHhhcCCCCCEEe
Q 013056          352 NLCKA---DARDLGSALVHIPNLEILD  375 (450)
Q Consensus       352 ~l~~~---~~~~l~~~l~~~~~L~~L~  375 (450)
                      .+...   ........+..+|+|+.||
T Consensus       231 pl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          231 SLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             TTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             cCccccCcchhHHHHHHHHCcccCeEC
Confidence            98751   1123455677889999887

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.97  E-value=0.00031  Score=68.55  Aligned_cols=83  Identities=14%  Similarity=0.165  Sum_probs=45.6

Q ss_pred             CCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhH
Q 013056          338 KSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG  417 (450)
Q Consensus       338 ~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g  417 (450)
                      ..+.+|+.+.+..+ ++.-|    ..++..+.+|+.++|..+ ++.      ++.  .+|..|.+|+.+++..+ ++..|
T Consensus       294 ~~~~~L~~i~l~~~-i~~I~----~~aF~~c~~L~~i~lp~~-v~~------I~~--~aF~~c~~L~~i~lp~~-l~~I~  358 (394)
T 4fs7_A          294 YGCSSLTEVKLLDS-VKFIG----EEAFESCTSLVSIDLPYL-VEE------IGK--RSFRGCTSLSNINFPLS-LRKIG  358 (394)
T ss_dssp             TTCTTCCEEEECTT-CCEEC----TTTTTTCTTCCEECCCTT-CCE------ECT--TTTTTCTTCCEECCCTT-CCEEC
T ss_pred             cccccccccccccc-cceec----hhhhcCCCCCCEEEeCCc-ccE------EhH--HhccCCCCCCEEEECcc-ccEeh
Confidence            35667777777544 33211    224666777777777643 333      111  45677777777777655 44432


Q ss_pred             HHHHHHHHhcCCCCCcEEECcCC
Q 013056          418 VSQLLDTLSTLRRPPTSLSIADN  440 (450)
Q Consensus       418 ~~~l~~~l~~l~~~L~~L~L~~N  440 (450)
                          ..++.. ..+|+.+++..+
T Consensus       359 ----~~aF~~-C~~L~~i~lp~~  376 (394)
T 4fs7_A          359 ----ANAFQG-CINLKKVELPKR  376 (394)
T ss_dssp             ----TTTBTT-CTTCCEEEEEGG
T ss_pred             ----HHHhhC-CCCCCEEEECCC
Confidence                123444 344777776543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.80  E-value=0.0034  Score=61.06  Aligned_cols=105  Identities=15%  Similarity=0.071  Sum_probs=67.1

Q ss_pred             hcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCC
Q 013056          273 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNN  352 (450)
Q Consensus       273 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~  352 (450)
                      +..+..++.+....+.+...        .+..+.+|+.+.+..+ +.....           ..+.+|.+|+.+++..+ 
T Consensus       272 F~~~~~l~~~~~~~~~i~~~--------~F~~~~~L~~i~l~~~-i~~I~~-----------~aF~~c~~L~~i~lp~~-  330 (394)
T 4fs7_A          272 FYNCSGLKKVIYGSVIVPEK--------TFYGCSSLTEVKLLDS-VKFIGE-----------EAFESCTSLVSIDLPYL-  330 (394)
T ss_dssp             TTTCTTCCEEEECSSEECTT--------TTTTCTTCCEEEECTT-CCEECT-----------TTTTTCTTCCEECCCTT-
T ss_pred             cccccccceeccCceeeccc--------cccccccccccccccc-cceech-----------hhhcCCCCCCEEEeCCc-
Confidence            34455666665554433321        1344678888888654 332222           34557889999999754 


Q ss_pred             CChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCC
Q 013056          353 LCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENC  411 (450)
Q Consensus       353 l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n  411 (450)
                      ++.-|    ..++.++.+|+.+++..| ++.      ++.  .+|..|.+|+.+++..+
T Consensus       331 v~~I~----~~aF~~c~~L~~i~lp~~-l~~------I~~--~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          331 VEEIG----KRSFRGCTSLSNINFPLS-LRK------IGA--NAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CCEEC----TTTTTTCTTCCEECCCTT-CCE------ECT--TTBTTCTTCCEEEEEGG
T ss_pred             ccEEh----HHhccCCCCCCEEEECcc-ccE------ehH--HHhhCCCCCCEEEECCC
Confidence            55421    245788999999999876 544      221  67899999999999765

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=95.78  E-value=0.005  Score=40.94  Aligned_cols=40  Identities=20%  Similarity=0.213  Sum_probs=29.8

Q ss_pred             cchhhccCchHHHHHHHhcCChhhhhhhhhcCCCCCCCCCcccccccccccccCCchHHHHHHHh
Q 013056           16 VIPYVYELPADLFDILLTCLPPLALQKLQTKMDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFK   80 (450)
Q Consensus        16 ~~~~~~~lp~~ll~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~r~~~~~~~W~~l~~   80 (450)
                      .-+.+..||.|++..||++||+..+                         .++...++.|+++..
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl-------------------------~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPEL-------------------------LKVSGVCKRWYRLAS   44 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGH-------------------------HHHHTTCHHHHHHHT
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHH-------------------------HHHHHHHHHHHHHhC
Confidence            3456789999999999999997776                         345567888988774

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.37  E-value=0.015  Score=56.49  Aligned_cols=133  Identities=17%  Similarity=0.197  Sum_probs=79.7

Q ss_pred             HhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccC
Q 013056          271 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRG  350 (450)
Q Consensus       271 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~  350 (450)
                      ..+.++..|+.+.+..+... .+.     ..+..+..|+.+.+... +.....           ..|.+|.+|+.+++..
T Consensus       259 ~aF~~c~~L~~i~lp~~~~~-I~~-----~aF~~c~~L~~i~l~~~-i~~I~~-----------~aF~~c~~L~~i~lp~  320 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVVS-IGT-----GAFMNCPALQDIEFSSR-ITELPE-----------SVFAGCISLKSIDIPE  320 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCCE-ECT-----TTTTTCTTCCEEECCTT-CCEECT-----------TTTTTCTTCCEEECCT
T ss_pred             ceeeecccccEEecccccce-ecC-----cccccccccccccCCCc-ccccCc-----------eeecCCCCcCEEEeCC
Confidence            34667889999999765321 111     22355789999999643 332222           4455789999999976


Q ss_pred             CCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCC
Q 013056          351 NNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRR  430 (450)
Q Consensus       351 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~  430 (450)
                      + ++.-|    ..++..+.+|+.+.|..+ ++.      +..  .+|..|.+|+.+++.++..       ...++.. ..
T Consensus       321 ~-v~~I~----~~aF~~C~~L~~i~ip~s-v~~------I~~--~aF~~C~~L~~i~~~~~~~-------~~~~~~~-~~  378 (394)
T 4gt6_A          321 G-ITQIL----DDAFAGCEQLERIAIPSS-VTK------IPE--SAFSNCTALNNIEYSGSRS-------QWNAIST-DS  378 (394)
T ss_dssp             T-CCEEC----TTTTTTCTTCCEEEECTT-CCB------CCG--GGGTTCTTCCEEEESSCHH-------HHHTCBC-CC
T ss_pred             c-ccEeh----HhHhhCCCCCCEEEECcc-cCE------EhH--hHhhCCCCCCEEEECCcee-------ehhhhhc-cC
Confidence            5 44311    235788999999999754 433      111  6789999999999998742       2244555 55


Q ss_pred             CCcEEECcCCCCC
Q 013056          431 PPTSLSIADNNLG  443 (450)
Q Consensus       431 ~L~~L~L~~N~l~  443 (450)
                      .|+.+.+..|.+.
T Consensus       379 ~L~~i~i~~~~~~  391 (394)
T 4gt6_A          379 GLQNLPVAPGSID  391 (394)
T ss_dssp             CC-----------
T ss_pred             CCCEEEeCCCCEE
Confidence            6999988777553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.36  E-value=0.0069  Score=48.91  Aligned_cols=36  Identities=31%  Similarity=0.350  Sum_probs=18.4

Q ss_pred             CceeEEEccCCCCChhhHHHHHH-HhhcCCCCCEEecCCCCC
Q 013056          341 QSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTI  381 (450)
Q Consensus       341 ~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l  381 (450)
                      .+|+.|+|++|+|+.     |+. .+..+++|+.|+|++|.+
T Consensus        31 ~~l~~L~Ls~N~l~~-----l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           31 VDTTELVLTGNNLTA-----LPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TTCSEEECTTSCCSS-----CCTTTGGGCTTCCEEECCSSCC
T ss_pred             cCCCEEECCCCcCCc-----cChhhhhhccccCEEEecCCCe
Confidence            345555555555554     322 234455555555555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.32  E-value=0.033  Score=53.99  Aligned_cols=107  Identities=13%  Similarity=0.205  Sum_probs=59.6

Q ss_pred             hCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCC
Q 013056          303 EASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIE  382 (450)
Q Consensus       303 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~  382 (450)
                      ..+..|+.+.+..+... ...           ..+.++..|+.+.+.. .++.-+    ..++..+.+|+.++|..+ ++
T Consensus       262 ~~c~~L~~i~lp~~~~~-I~~-----------~aF~~c~~L~~i~l~~-~i~~I~----~~aF~~c~~L~~i~lp~~-v~  323 (394)
T 4gt6_A          262 DSCAYLASVKMPDSVVS-IGT-----------GAFMNCPALQDIEFSS-RITELP----ESVFAGCISLKSIDIPEG-IT  323 (394)
T ss_dssp             TTCSSCCEEECCTTCCE-ECT-----------TTTTTCTTCCEEECCT-TCCEEC----TTTTTTCTTCCEEECCTT-CC
T ss_pred             eecccccEEecccccce-ecC-----------cccccccccccccCCC-cccccC----ceeecCCCCcCEEEeCCc-cc
Confidence            44677777777654321 111           3344667777777753 333311    124667778888887654 32


Q ss_pred             hhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCC
Q 013056          383 DDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN  441 (450)
Q Consensus       383 ~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~  441 (450)
                      .      +..  .+|..|.+|+.+.+..+ ++..|    ..++.. ..+|+.+++.+|.
T Consensus       324 ~------I~~--~aF~~C~~L~~i~ip~s-v~~I~----~~aF~~-C~~L~~i~~~~~~  368 (394)
T 4gt6_A          324 Q------ILD--DAFAGCEQLERIAIPSS-VTKIP----ESAFSN-CTALNNIEYSGSR  368 (394)
T ss_dssp             E------ECT--TTTTTCTTCCEEEECTT-CCBCC----GGGGTT-CTTCCEEEESSCH
T ss_pred             E------ehH--hHhhCCCCCCEEEECcc-cCEEh----HhHhhC-CCCCCEEEECCce
Confidence            2      111  45777778888877544 44422    123444 3457888777653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.28  E-value=0.0056  Score=49.42  Aligned_cols=69  Identities=16%  Similarity=0.115  Sum_probs=49.0

Q ss_pred             eEEEccCCCCC--hhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChh-HHHH
Q 013056          344 RLLNLRGNNLC--KADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR-GVSQ  420 (450)
Q Consensus       344 ~~L~L~~n~l~--~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~-g~~~  420 (450)
                      ..++.++++++  .     +|..+  -++|++|+|++|+|+.      ++.  ..|..+++|+.|+|++|.+.-. ....
T Consensus        11 ~~v~Cs~~~L~~~~-----vP~~l--p~~l~~L~Ls~N~l~~------l~~--~~f~~l~~L~~L~L~~NP~~CdC~l~~   75 (130)
T 3rfe_A           11 TLVDCGRRGLTWAS-----LPTAF--PVDTTELVLTGNNLTA------LPP--GLLDALPALRTAHLGANPWRCDCRLVP   75 (130)
T ss_dssp             TEEECCSSCCCTTT-----SCSCC--CTTCSEEECTTSCCSS------CCT--TTGGGCTTCCEEECCSSCCBCSGGGHH
T ss_pred             CEEEeCCCCCcccc-----CCCCC--CcCCCEEECCCCcCCc------cCh--hhhhhccccCEEEecCCCeeccCccHH
Confidence            47888888887  4     55432  2479999999999987      443  5677789999999999987531 1233


Q ss_pred             HHHHHhc
Q 013056          421 LLDTLST  427 (450)
Q Consensus       421 l~~~l~~  427 (450)
                      +...+..
T Consensus        76 l~~wl~~   82 (130)
T 3rfe_A           76 LRAWLAG   82 (130)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            5555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=92.51  E-value=0.087  Score=50.54  Aligned_cols=61  Identities=10%  Similarity=0.190  Sum_probs=31.8

Q ss_pred             CCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccC
Q 013056          337 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLEN  410 (450)
Q Consensus       337 ~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~  410 (450)
                      +..|.+|+.+.+.++.++.-+    ..++..+.+|+.++|..+ ++.      +..  .+|..|.+|+.+.+..
T Consensus       282 F~~c~~L~~i~l~~~~i~~I~----~~aF~~c~~L~~i~lp~~-l~~------I~~--~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          282 CSGCSNLTKVVMDNSAIETLE----PRVFMDCVKLSSVTLPTA-LKT------IQV--YAFKNCKALSTISYPK  342 (379)
T ss_dssp             TTTCTTCCEEEECCTTCCEEC----TTTTTTCTTCCEEECCTT-CCE------ECT--TTTTTCTTCCCCCCCT
T ss_pred             cccccccccccccccccceeh----hhhhcCCCCCCEEEcCcc-ccE------EHH--HHhhCCCCCCEEEECC
Confidence            345566666666665555311    224556666666666543 322      110  4456666666666543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=91.46  E-value=0.059  Score=51.72  Aligned_cols=130  Identities=11%  Similarity=0.049  Sum_probs=80.0

Q ss_pred             hcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCC
Q 013056          210 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL  289 (450)
Q Consensus       210 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  289 (450)
                      ..+.+|+.+.+..+ +...+..++..        +..|+.+.+..+ ++..+        ...+.++.+|+.+.+..+ +
T Consensus       214 ~~~~~l~~i~~~~~-~~~i~~~~f~~--------~~~L~~i~lp~~-v~~I~--------~~aF~~~~~l~~i~l~~~-i  274 (379)
T 4h09_A          214 SYGKNLKKITITSG-VTTLGDGAFYG--------MKALDEIAIPKN-VTSIG--------SFLLQNCTALKTLNFYAK-V  274 (379)
T ss_dssp             TTCSSCSEEECCTT-CCEECTTTTTT--------CSSCCEEEECTT-CCEEC--------TTTTTTCTTCCEEEECCC-C
T ss_pred             ccccccceeeeccc-eeEEccccccC--------CccceEEEcCCC-ccEeC--------ccccceeehhcccccccc-c
Confidence            45566777766544 22111111111        577888887654 33311        234567888999988654 3


Q ss_pred             ChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCC
Q 013056          290 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIP  369 (450)
Q Consensus       290 ~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  369 (450)
                      ...+.     ..+..|.+|+.+.+.++.++....           ..|.+|.+|+.+.|..+ ++.-|    ..++.+++
T Consensus       275 ~~i~~-----~aF~~c~~L~~i~l~~~~i~~I~~-----------~aF~~c~~L~~i~lp~~-l~~I~----~~aF~~C~  333 (379)
T 4h09_A          275 KTVPY-----LLCSGCSNLTKVVMDNSAIETLEP-----------RVFMDCVKLSSVTLPTA-LKTIQ----VYAFKNCK  333 (379)
T ss_dssp             SEECT-----TTTTTCTTCCEEEECCTTCCEECT-----------TTTTTCTTCCEEECCTT-CCEEC----TTTTTTCT
T ss_pred             eeccc-----cccccccccccccccccccceehh-----------hhhcCCCCCCEEEcCcc-ccEEH----HHHhhCCC
Confidence            32121     223558899999998887664333           45557899999999754 44421    23578899


Q ss_pred             CCCEEecCCC
Q 013056          370 NLEILDISDN  379 (450)
Q Consensus       370 ~L~~L~Ls~N  379 (450)
                      +|+.+.+..+
T Consensus       334 ~L~~i~ip~~  343 (379)
T 4h09_A          334 ALSTISYPKS  343 (379)
T ss_dssp             TCCCCCCCTT
T ss_pred             CCCEEEECCc
Confidence            9999998754

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=90.55  E-value=0.15  Score=46.99  Aligned_cols=24  Identities=38%  Similarity=0.585  Sum_probs=21.6

Q ss_pred             chhhccCchHHHHHHHhcCChhhh
Q 013056           17 IPYVYELPADLFDILLTCLPPLAL   40 (450)
Q Consensus        17 ~~~~~~lp~~ll~~~~~~l~~~~~   40 (450)
                      .+.+..||.|++..||++|||..|
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L   71 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATEL   71 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHH
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHH
Confidence            457789999999999999998888

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=86.98  E-value=0.25  Score=45.24  Aligned_cols=26  Identities=31%  Similarity=0.409  Sum_probs=22.9

Q ss_pred             hhccCchHHHHHHHhcCChhhhhhhh
Q 013056           19 YVYELPADLFDILLTCLPPLALQKLQ   44 (450)
Q Consensus        19 ~~~~lp~~ll~~~~~~l~~~~~~~~~   44 (450)
                      -+.+||.|++..|+++|+|.+++++.
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~   29 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLG   29 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHH
Confidence            46789999999999999999996655

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=85.78  E-value=0.3  Score=47.71  Aligned_cols=27  Identities=11%  Similarity=0.080  Sum_probs=22.5

Q ss_pred             hhhccCchHHHHHHHhcCChhhhhhhh
Q 013056           18 PYVYELPADLFDILLTCLPPLALQKLQ   44 (450)
Q Consensus        18 ~~~~~lp~~ll~~~~~~l~~~~~~~~~   44 (450)
                      -.+..||.|++..||++||+..|.+..
T Consensus        13 d~~~~lp~~~~~~i~~~l~~~~l~~~~   39 (464)
T 3v7d_B           13 DLITSLPFEISLKIFNYLQFEDIINSL   39 (464)
T ss_dssp             CHHHHSCHHHHHHHHTTSCHHHHHHHH
T ss_pred             CChHHCCHHHHHHHHhcCCHHHHHHHH
Confidence            357789999999999999998884443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	450
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (132), Expect = 5e-09
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 13/107 (12%)

Query: 305 SSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSA 364
           S  +  LD+    +               L     LQ  +++ L    L +A  +D+ SA
Sbjct: 1   SLDIQSLDIQCEELS--------DARWAELL--PLLQQCQVVRLDDCGLTEARCKDISSA 50

Query: 365 LVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENC 411
           L   P L  L++  N + D G+  ++            + +L L+NC
Sbjct: 51  LRVNPALAELNLRSNELGDVGVHCVLQGL---QTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (124), Expect = 4e-08
 Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 3/101 (2%)

Query: 321 WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNT 380
                D        G G+    LR+L L   ++  +    L + L+   +L  LD+S+N 
Sbjct: 349 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 408

Query: 381 IEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL 421
           + D GI  L+    Q       L +L L +   S     +L
Sbjct: 409 LGDAGILQLVESVRQ---PGCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 1e-05
 Identities = 23/104 (22%), Positives = 34/104 (32%), Gaps = 7/104 (6%)

Query: 271 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGP 330
                G  L  L L  C +  D      ++ L A+ SL  LDLS N +G      D    
Sbjct: 363 GLGQPGSVLRVLWLADCDVS-DSSCSSLAATLLANHSLRELDLSNNCLG------DAGIL 415

Query: 331 LFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEIL 374
                  +    L  L L      +     L +     P+L ++
Sbjct: 416 QLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 1e-04
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 370 NLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLR 429
           +++ LDI    + D     L+P   Q          + L++C L+      +   L    
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQ-------CQVVRLDDCGLTEARCKDISSALRVNP 55

Query: 430 RPPTSLSIADNNLG 443
                L++  N LG
Sbjct: 56  A-LAELNLRSNELG 68

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 2e-04
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 367 HIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLS 426
               L +L ++D  + D    SL           + L EL L N  L   G+ QL++++ 
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLA----ATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 427 TLRRPPTSLSIADNNLG 443
                   L + D    
Sbjct: 423 QPGCLLEQLVLYDIYWS 439

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 342 SLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 401
           S+   +L+ + +   D + + + L+   +++ + +S NTI  +  R L     +      
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWL----SENIASKK 59

Query: 402 PLVELYLENC 411
            L      + 
Sbjct: 60  DLEIAEFSDI 69

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 8e-04
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 339 SLQSLRLLNLRGNNLCKADARDLGSALVH-IPNLEILDISDNTIEDDG 385
               L+ L L+ N +     R L + +   +P+L  L+++ N   ++ 
Sbjct: 271 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 318

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 338 KSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTI 381
               S++ + L GN +    AR L   +    +LEI + SD   
Sbjct: 28  LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT 71

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 46/355 (12%), Positives = 101/355 (28%), Gaps = 44/355 (12%)

Query: 26  DLFDILLTCLPPLA-LQKLQTKMDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWS 84
           +  +  LT + PL  L KL   +  ++  +      N         FN     +   +  
Sbjct: 72  NFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 131

Query: 85  GFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMN 144
              +++E          A                             T L  +     + 
Sbjct: 132 TNLNRLELSSNTISDISALSGLT-------------SLQQLSFGNQVTDLKPLANLTTLE 178

Query: 145 HLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQAL 204
            L    +K+S              +     + +   L   + L  L L   + ++     
Sbjct: 179 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-- 236

Query: 205 CKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 264
               + +   L  L+  + ++S          L   +   ++I N+S      +    + 
Sbjct: 237 ----LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS-----PLAGLTAL 287

Query: 265 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 324
             +EL        S  S      +L   F  +   S + + + L  L  + N +      
Sbjct: 288 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD---- 343

Query: 325 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN 379
                 + SL    +L ++  L+   N +         + L ++  +  L ++D 
Sbjct: 344 ------VSSLA---NLTNINWLSAGHNQISDL------TPLANLTRITQLGLNDQ 383

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	450
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.91
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.91
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.9
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.88
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.76
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.76
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.72
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.7
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.68
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.68
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.65
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.65
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.65
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.64
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.59
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.58
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.56
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.56
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.55
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	99.54
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.52
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.52
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.52
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.48
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	99.48
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.36
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.33
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.32
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.32
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.29
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.26
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.25
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.25
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.19
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.09
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.02
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.97
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.91
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.8
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.72
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.37
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.33
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.87
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	96.69
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	95.0
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	89.52

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.91  E-value=6e-23  Score=197.06  Aligned_cols=269  Identities=16%  Similarity=0.122  Sum_probs=206.2

Q ss_pred             hhhcccccCcchh-----hhHhhhcCCCccEEEeecccCh-------HHHHHHHHHHHhcCCCccEEEccCCCCChhHHH
Q 013056          164 ARCLRLQNALCVE-----ETCQLLRESKLQSLVLRWIRFE-------EHVQALCKLLIQNSETLASLEFLHCKLSPSFVE  231 (450)
Q Consensus       164 l~~l~L~~~~~~~-----~~~~l~~~~~L~~L~Ls~n~~~-------~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~  231 (450)
                      ++.++|+++.+..     +...+...++|+.|+++++...       .....++ ..+..+++|++|+|++|.+++.++.
T Consensus        33 l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~-~~l~~~~~L~~L~L~~n~i~~~~~~  111 (344)
T d2ca6a1          33 VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL-QALLKCPKLHTVRLSDNAFGPTAQE  111 (344)
T ss_dssp             CCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHH-HHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred             CCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHH-HHHhhCCCccccccccccccccccc
Confidence            3445555554432     3344556799999999877521       1222333 3345678999999999999999999


Q ss_pred             HHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHH-----hhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCC
Q 013056          232 GICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVS-----FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASS  306 (450)
Q Consensus       232 ~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~-----~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~  306 (450)
                      .+...+..    +++|++|++++|.+...+...+...+..     .....+.|+.+++++|.+++.+...++.++.. ++
T Consensus       112 ~l~~~l~~----~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~-~~  186 (344)
T d2ca6a1         112 PLIDFLSK----HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS-HR  186 (344)
T ss_dssp             HHHHHHHH----CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH-CT
T ss_pred             chhhhhcc----cccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhh-hh
Confidence            99888776    5899999999999876444433332222     23467899999999999999999888887755 58


Q ss_pred             CCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhH
Q 013056          307 SLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGI  386 (450)
Q Consensus       307 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~  386 (450)
                      .|++|+|++|.+++...   ...+...+   ..+++|+.|+|++|.+++.|+..++..+..+++|++|+|++|.|++.|+
T Consensus       187 ~L~~L~L~~n~i~~~g~---~~~l~~~l---~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~  260 (344)
T d2ca6a1         187 LLHTVKMVQNGIRPEGI---EHLLLEGL---AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA  260 (344)
T ss_dssp             TCCEEECCSSCCCHHHH---HHHHHTTG---GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             hhccccccccccccccc---ccchhhhh---cchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhh
Confidence            99999999999885210   11122223   3568999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 013056          387 RSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC  446 (450)
Q Consensus       387 ~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~  446 (450)
                      ..++..+..  ...+.|++|++++|+|+..|+..+...+..-...|++|+|++|.++++.
T Consensus       261 ~~l~~~l~~--~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~  318 (344)
T d2ca6a1         261 AAVVDAFSK--LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  318 (344)
T ss_dssp             HHHHHHHHT--CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHHhhh--ccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcc
Confidence            999865421  2347899999999999999999999999632455999999999997653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.91  E-value=5.7e-23  Score=197.22  Aligned_cols=254  Identities=20%  Similarity=0.220  Sum_probs=204.5

Q ss_pred             hhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCC------hhHHHHHHHHHhccccCCCCee
Q 013056          175 VEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLS------PSFVEGICRSLCSKRKRIHKIE  248 (450)
Q Consensus       175 ~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~------~~~~~~l~~~L~~~~~~~~~L~  248 (450)
                      ..+...+.....+++|+|++|.+.......+...+...++|+.|+++++.+.      ..+...+...+..    +++|+
T Consensus        21 ~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~----~~~L~   96 (344)
T d2ca6a1          21 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK----CPKLH   96 (344)
T ss_dssp             HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTT----CTTCC
T ss_pred             HHHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhh----CCCcc
Confidence            3445667778999999999998654433333444567789999999987543      2445566666665    58999


Q ss_pred             EEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHh--------hCCCCCcEEeccCCCCCC
Q 013056          249 NLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLL--------EASSSLSILDLSGNSIGG  320 (450)
Q Consensus       249 ~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~--------~~~~~L~~L~Ls~n~l~~  320 (450)
                      +|++++|.++..+..    .+...+..+++|++|++++|.++..+...++.++.        ...+.|+.+++++|.+++
T Consensus        97 ~L~L~~n~i~~~~~~----~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~  172 (344)
T d2ca6a1          97 TVRLSDNAFGPTAQE----PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  172 (344)
T ss_dssp             EEECCSCCCCTTTHH----HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             ccccccccccccccc----chhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccc
Confidence            999999999886655    67777888999999999999998888877777653        346789999999999884


Q ss_pred             cccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHH-HHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCC
Q 013056          321 WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARD-LGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASER  399 (450)
Q Consensus       321 ~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~  399 (450)
                          .+...+...+.   .++.|+.|+|++|.|+++|+.. +...+..+++|+.|+|++|.+++.|+..+.+    .+..
T Consensus       173 ----~~~~~l~~~l~---~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~----~l~~  241 (344)
T d2ca6a1         173 ----GSMKEWAKTFQ---SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI----ALKS  241 (344)
T ss_dssp             ----GGHHHHHHHHH---HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH----HGGG
T ss_pred             ----cccccccchhh---hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccc----cccc
Confidence                33444556666   4578999999999999998765 5667889999999999999999999999874    4677


Q ss_pred             CCCcCEEEccCCCCChhHHHHHHHHHhcC-CCCCcEEECcCCCCCcccc
Q 013056          400 CNPLVELYLENCELSGRGVSQLLDTLSTL-RRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       400 ~~~L~~L~L~~n~l~~~g~~~l~~~l~~l-~~~L~~L~L~~N~l~~~~~  447 (450)
                      +++|++|+|++|.|++.|+..+++.+... +.+|++|++++|+|++++.
T Consensus       242 ~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~  290 (344)
T d2ca6a1         242 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV  290 (344)
T ss_dssp             CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred             cccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHH
Confidence            89999999999999999999999999763 3469999999999987653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.7e-23  Score=203.23  Aligned_cols=104  Identities=27%  Similarity=0.334  Sum_probs=86.2

Q ss_pred             CCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHH
Q 013056          340 LQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVS  419 (450)
Q Consensus       340 l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~  419 (450)
                      ...|+.+++++|.++.+++..++..+..+++|++|+|++|.|+++|+..++..+   ....+.|++|+|++|.|++.|+.
T Consensus       311 ~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l---~~~~~~L~~L~Ls~n~i~~~~~~  387 (460)
T d1z7xw1         311 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL---GQPGSVLRVLWLADCDVSDSSCS  387 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH---TSTTCCCCEEECTTSCCCHHHHH
T ss_pred             ccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhh---hcccCCCCEEECCCCCCChHHHH
Confidence            357888888888888888888888888888999999999999999988887532   23457799999999999999999


Q ss_pred             HHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056          420 QLLDTLSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       420 ~l~~~l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                      ++++.+.. +++|++|+|++|+|++++.
T Consensus       388 ~l~~~l~~-~~~L~~L~Ls~N~i~~~g~  414 (460)
T d1z7xw1         388 SLAATLLA-NHSLRELDLSNNCLGDAGI  414 (460)
T ss_dssp             HHHHHHHH-CCCCCEEECCSSSCCHHHH
T ss_pred             HHHHHHhc-CCCCCEEECCCCcCCHHHH
Confidence            99888887 5669999999999987654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.6e-21  Score=193.14  Aligned_cols=187  Identities=23%  Similarity=0.174  Sum_probs=143.1

Q ss_pred             CeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccccc
Q 013056          246 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY  325 (450)
Q Consensus       246 ~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~  325 (450)
                      .++.+++++|.+....    .......+..++.++.+++++|.+++.++..++..+....+.|+.+++++|.+++    .
T Consensus       256 ~l~~l~l~~n~i~~~~----~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~----~  327 (460)
T d1z7xw1         256 RLRTLWIWECGITAKG----CGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA----A  327 (460)
T ss_dssp             CCCEEECTTSCCCHHH----HHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG----G
T ss_pred             cccccccccccccccc----cccccccccccccccccccccccccccccchhhccccccccccccccccccchhh----h
Confidence            3445555555444311    1134444556677777777777777777777777776666778888888888774    2


Q ss_pred             CcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhh-cCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcC
Q 013056          326 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALV-HIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV  404 (450)
Q Consensus       326 ~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~  404 (450)
                      +...++..+.   .+++|++|+|++|.|+++|+..+++.+. ..+.|++|+|++|.|++.|+.+++.    .+..+++|+
T Consensus       328 ~~~~l~~~~~---~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~----~l~~~~~L~  400 (460)
T d1z7xw1         328 CCSHFSSVLA---QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA----TLLANHSLR  400 (460)
T ss_dssp             GHHHHHHHHH---HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH----HHHHCCCCC
T ss_pred             hhhhcccccc---cccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHH----HHhcCCCCC
Confidence            3333444444   4578999999999999999999999987 4678999999999999999999874    456679999


Q ss_pred             EEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056          405 ELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       405 ~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                      +|+|++|+|++.|+..+++.+......|+.|++.+|.+.++..
T Consensus       401 ~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~  443 (460)
T d1z7xw1         401 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME  443 (460)
T ss_dssp             EEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred             EEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHH
Confidence            9999999999999999999998744469999999999987653

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.76  E-value=7.7e-21  Score=179.69  Aligned_cols=210  Identities=17%  Similarity=0.130  Sum_probs=117.4

Q ss_pred             hhhcccccCcch---hhhHhhhcCCCccEEEeec-ccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhc
Q 013056          164 ARCLRLQNALCV---EETCQLLRESKLQSLVLRW-IRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCS  239 (450)
Q Consensus       164 l~~l~L~~~~~~---~~~~~l~~~~~L~~L~Ls~-n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~  239 (450)
                      +..++|.++...   .++..+.++++|++|+|++ |.+.+.++..    +.++++|++|+|++|+|....+..+..    
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~----i~~L~~L~~L~Ls~N~l~~~~~~~~~~----  123 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA----IAKLTQLHYLYITHTNVSGAIPDFLSQ----  123 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG----GGGCTTCSEEEEEEECCEEECCGGGGG----
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc----cccccccchhhhccccccccccccccc----
Confidence            334455554443   3566777888888888876 4544322221    467788888888888776544433322    


Q ss_pred             cccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCC-CcEEeccCCCC
Q 013056          240 KRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSS-LSILDLSGNSI  318 (450)
Q Consensus       240 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~-L~~L~Ls~n~l  318 (450)
                          ...|+.++++.|.+..        .++..+.+++.|+++++++|.+.+..+..+.     .+.. ++.++++.|++
T Consensus       124 ----~~~L~~l~l~~N~~~~--------~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~-----~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         124 ----IKTLVTLDFSYNALSG--------TLPPSISSLPNLVGITFDGNRISGAIPDSYG-----SFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ----CTTCCEEECCSSEEES--------CCCGGGGGCTTCCEEECCSSCCEEECCGGGG-----CCCTTCCEEECCSSEE
T ss_pred             ----hhhhcccccccccccc--------cCchhhccCcccceeeccccccccccccccc-----cccccccccccccccc
Confidence                5778888888887766        4556677778888888888877765554442     2344 47777777777


Q ss_pred             CCcccccC---------------cccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCCh
Q 013056          319 GGWLSKYD---------------RSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED  383 (450)
Q Consensus       319 ~~~~~~~~---------------~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~  383 (450)
                      ++..+...               ...++..+.   .+++|+.+++++|.++.     .+..+..+++|+.|+|++|++++
T Consensus       187 ~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~---~~~~l~~l~~~~~~l~~-----~~~~~~~~~~L~~L~Ls~N~l~g  258 (313)
T d1ogqa_         187 TGKIPPTFANLNLAFVDLSRNMLEGDASVLFG---SDKNTQKIHLAKNSLAF-----DLGKVGLSKNLNGLDLRNNRIYG  258 (313)
T ss_dssp             EEECCGGGGGCCCSEEECCSSEEEECCGGGCC---TTSCCSEEECCSSEECC-----BGGGCCCCTTCCEEECCSSCCEE
T ss_pred             cccccccccccccccccccccccccccccccc---ccccccccccccccccc-----cccccccccccccccCccCeecc
Confidence            65433000               000111212   23445555555554443     12234445555555555555543


Q ss_pred             hhHHHHHHHHHhhcCCCCCcCEEEccCCCCC
Q 013056          384 DGIRSLIPYFVQASERCNPLVELYLENCELS  414 (450)
Q Consensus       384 ~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~  414 (450)
                      .     +|   ..+..+++|++|+|++|+|+
T Consensus       259 ~-----iP---~~l~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         259 T-----LP---QGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             C-----CC---GGGGGCTTCCEEECCSSEEE
T ss_pred             c-----CC---hHHhCCCCCCEEECcCCccc
Confidence            2     33   33444555555555555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4.3e-18  Score=158.22  Aligned_cols=212  Identities=17%  Similarity=0.192  Sum_probs=151.7

Q ss_pred             cCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCC-CCCCCC
Q 013056          183 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDIS-SFIENC  261 (450)
Q Consensus       183 ~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n-~i~~~~  261 (450)
                      ...+|++|+++++.+...   ....++.++++|++|++++|.+++..+..++.        +++|++|++++| .+++  
T Consensus        44 ~~~~L~~LdLs~~~i~~~---~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~--------~~~L~~L~Ls~c~~itd--  110 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVS---TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK--------NSNLVRLNLSGCSGFSE--  110 (284)
T ss_dssp             CCBCCCEEECTTCEECHH---HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT--------CTTCSEEECTTCBSCCH--
T ss_pred             cCCCCCEEECCCCccCHH---HHHHHHHhCCCcccccccccCCCcHHHHHHhc--------CCCCcCccccccccccc--
Confidence            446899999998874332   22334778899999999999999888877754        688999999986 5654  


Q ss_pred             chhhHHHHHHhhcCCCCCCEEecCCC-CCChhHHHHHHHHHhhCCCCCcEEeccCCC--CCCcccccCcccHHHhhhCCC
Q 013056          262 PSSVVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNS--IGGWLSKYDRSGPLFSLGAGK  338 (450)
Q Consensus       262 ~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~l~~~l~~~~  338 (450)
                           +.+...+.++++|++|++++| .+++.+......   ..++.|+.|+++++.  +++.       .+.....   
T Consensus       111 -----~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~i~~~-------~l~~l~~---  172 (284)
T d2astb2         111 -----FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA---HVSETITQLNLSGYRKNLQKS-------DLSTLVR---  172 (284)
T ss_dssp             -----HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH---HSCTTCCEEECCSCGGGSCHH-------HHHHHHH---
T ss_pred             -----cccchhhHHHHhccccccccccccccccchhhhc---ccccccchhhhcccccccccc-------ccccccc---
Confidence                 234455567899999999996 677766554332   345789999998763  4431       1222223   


Q ss_pred             CCCceeEEEccCC-CCChhhHHHHHHHhhcCCCCCEEecCC-CCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChh
Q 013056          339 SLQSLRLLNLRGN-NLCKADARDLGSALVHIPNLEILDISD-NTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR  416 (450)
Q Consensus       339 ~l~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~-N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~  416 (450)
                      ++++|++|++++| .++++++    ..+.++++|++|+|++ +.|++.|+..        +..+++|+.|++++| +++.
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~----~~l~~~~~L~~L~L~~C~~i~~~~l~~--------L~~~~~L~~L~l~~~-~~d~  239 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCF----QEFFQLNYLQHLSLSRCYDIIPETLLE--------LGEIPTLKTLQVFGI-VPDG  239 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGG----GGGGGCTTCCEEECTTCTTCCGGGGGG--------GGGCTTCCEEECTTS-SCTT
T ss_pred             ccccccccccccccCCCchhh----hhhcccCcCCEEECCCCCCCChHHHHH--------HhcCCCCCEEeeeCC-CCHH
Confidence            5688999999987 6887653    3466789999999998 4788876444        345689999999998 8888


Q ss_pred             HHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056          417 GVSQLLDTLSTLRRPPTSLSIADNNLGRF  445 (450)
Q Consensus       417 g~~~l~~~l~~l~~~L~~L~L~~N~l~~~  445 (450)
                      ++..+++.+.+    |+   +..+.+++.
T Consensus       240 ~l~~l~~~lp~----L~---i~~~~ls~~  261 (284)
T d2astb2         240 TLQLLKEALPH----LQ---INCSHFTTI  261 (284)
T ss_dssp             CHHHHHHHSTT----SE---ESCCCSCCT
T ss_pred             HHHHHHHhCcc----cc---ccCccCCCC
Confidence            88777766544    43   456666653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.3e-18  Score=161.91  Aligned_cols=138  Identities=24%  Similarity=0.269  Sum_probs=63.1

Q ss_pred             hcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCC
Q 013056          273 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNN  352 (450)
Q Consensus       273 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~  352 (450)
                      ++++++|++|++++|.+.......     +....+|+.+++++|.+++..+           ..+..+++|+.|++++|+
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~~~~~-----~~~~~~L~~l~l~~N~l~~i~~-----------~~f~~~~~L~~L~l~~N~  164 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQELGPGL-----FRGLAALQYLYLQDNALQALPD-----------DTFRDLGNLTHLFLHGNR  164 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCT-----------TTTTTCTTCCEEECCSSC
T ss_pred             hcccccCCEEecCCcccccccccc-----cchhcccchhhhccccccccCh-----------hHhccccchhhcccccCc
Confidence            444555555555555543321111     1223455555555555544222           112233455555555555


Q ss_pred             CChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCC
Q 013056          353 LCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPP  432 (450)
Q Consensus       353 l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L  432 (450)
                      ++.    ..+.++..+++|+.+++++|++++.     .|   ..+..+++|++|++++|.++..    .+..+..+ .+|
T Consensus       165 l~~----l~~~~f~~l~~L~~l~l~~N~l~~i-----~~---~~f~~l~~L~~L~l~~N~i~~~----~~~~~~~~-~~L  227 (284)
T d1ozna_         165 ISS----VPERAFRGLHSLDRLLLHQNRVAHV-----HP---HAFRDLGRLMTLYLFANNLSAL----PTEALAPL-RAL  227 (284)
T ss_dssp             CCE----ECTTTTTTCTTCCEEECCSSCCCEE-----CT---TTTTTCTTCCEEECCSSCCSCC----CHHHHTTC-TTC
T ss_pred             ccc----cchhhhccccccchhhhhhcccccc-----Ch---hHhhhhhhcccccccccccccc----cccccccc-ccc
Confidence            543    1123344555555555555555441     12   3444555555555555555543    22333332 225


Q ss_pred             cEEECcCCCCC
Q 013056          433 TSLSIADNNLG  443 (450)
Q Consensus       433 ~~L~L~~N~l~  443 (450)
                      ++|++++|++.
T Consensus       228 ~~L~l~~N~l~  238 (284)
T d1ozna_         228 QYLRLNDNPWV  238 (284)
T ss_dssp             CEEECCSSCEE
T ss_pred             CEEEecCCCCC
Confidence            55555555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.9e-16  Score=146.90  Aligned_cols=205  Identities=19%  Similarity=0.243  Sum_probs=152.6

Q ss_pred             chhhcccccCcchh--hhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCC-CCChhHHHHHHHHHhc
Q 013056          163 YARCLRLQNALCVE--ETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLCS  239 (450)
Q Consensus       163 ~l~~l~L~~~~~~~--~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~  239 (450)
                      .++.++++++.+..  +...+.++++|++|+++++.+.......    +..+++|++|++++| .+++.+...+...   
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~----l~~~~~L~~L~Ls~c~~itd~~l~~l~~~---  119 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT----LAKNSNLVRLNLSGCSGFSEFALQTLLSS---  119 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH----HTTCTTCSEEECTTCBSCCHHHHHHHHHH---
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH----HhcCCCCcCccccccccccccccchhhHH---
Confidence            56778888877654  2333458899999999999865443322    457899999999997 8999998888766   


Q ss_pred             cccCCCCeeEEEcCCC-CCCCCCchhhHHHHHHhhc-CCCCCCEEecCCC--CCChhHHHHHHHHHhhCCCCCcEEeccC
Q 013056          240 KRKRIHKIENLSIDIS-SFIENCPSSVVVELVSFLS-SGRSLCSLKLRHC--HLDRDFGRMVFSSLLEASSSLSILDLSG  315 (450)
Q Consensus       240 ~~~~~~~L~~L~L~~n-~i~~~~~~~~~~~l~~~l~-~~~~L~~L~Ls~n--~l~~~~~~~l~~~L~~~~~~L~~L~Ls~  315 (450)
                          +++|++|++++| .+++       +.+...+. .+++|+.|+++++  .+++.+...++..    +++|++|++++
T Consensus       120 ----~~~L~~L~ls~c~~~~~-------~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~----~~~L~~L~L~~  184 (284)
T d2astb2         120 ----CSRLDELNLSWCFDFTE-------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR----CPNLVHLDLSD  184 (284)
T ss_dssp             ----CTTCCEEECCCCTTCCH-------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH----CTTCSEEECTT
T ss_pred             ----HHhcccccccccccccc-------ccchhhhcccccccchhhhcccccccccccccccccc----ccccccccccc
Confidence                789999999997 4544       13333343 4579999999986  5788777766543    79999999999


Q ss_pred             CC-CCCcccccCcccHHHhhhCCCCCCceeEEEccCC-CCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHH
Q 013056          316 NS-IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN-NLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYF  393 (450)
Q Consensus       316 n~-l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l  393 (450)
                      |. +++.           .+..+..+++|++|+|++| .|+++++..    +.++++|+.|+++++ +++.++..+..  
T Consensus       185 ~~~itd~-----------~~~~l~~~~~L~~L~L~~C~~i~~~~l~~----L~~~~~L~~L~l~~~-~~d~~l~~l~~--  246 (284)
T d2astb2         185 SVMLKND-----------CFQEFFQLNYLQHLSLSRCYDIIPETLLE----LGEIPTLKTLQVFGI-VPDGTLQLLKE--  246 (284)
T ss_dssp             CTTCCGG-----------GGGGGGGCTTCCEEECTTCTTCCGGGGGG----GGGCTTCCEEECTTS-SCTTCHHHHHH--
T ss_pred             ccCCCch-----------hhhhhcccCcCCEEECCCCCCCChHHHHH----HhcCCCCCEEeeeCC-CCHHHHHHHHH--
Confidence            75 6652           2233336789999999997 799876543    677999999999998 89988888763  


Q ss_pred             HhhcCCCCCcCEEEccCCCCCh
Q 013056          394 VQASERCNPLVELYLENCELSG  415 (450)
Q Consensus       394 ~~~l~~~~~L~~L~L~~n~l~~  415 (450)
                        .   +++|+   +..+.++.
T Consensus       247 --~---lp~L~---i~~~~ls~  260 (284)
T d2astb2         247 --A---LPHLQ---INCSHFTT  260 (284)
T ss_dssp             --H---STTSE---ESCCCSCC
T ss_pred             --h---Ccccc---ccCccCCC
Confidence              2   24544   56666765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.3e-18  Score=156.12  Aligned_cols=206  Identities=17%  Similarity=0.082  Sum_probs=142.7

Q ss_pred             ccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCe
Q 013056          168 RLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKI  247 (450)
Q Consensus       168 ~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L  247 (450)
                      +.++..++++|..+.  +++++|+|++|.+.......    +.++++|++|+|++|+|+....  +        ..+++|
T Consensus        16 ~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~----f~~l~~L~~L~L~~N~l~~l~~--~--------~~l~~L   79 (266)
T d1p9ag_          16 NCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLAT----LMPYTRLTQLNLDRAELTKLQV--D--------GTLPVL   79 (266)
T ss_dssp             ECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGG----GTTCTTCCEEECTTSCCCEEEC--C--------SCCTTC
T ss_pred             EccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHH----hhcccccccccccccccccccc--c--------cccccc
Confidence            344555555555442  57899999999865543322    5678899999999998874321  1        126789


Q ss_pred             eEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCc
Q 013056          248 ENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDR  327 (450)
Q Consensus       248 ~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~  327 (450)
                      ++|++++|+++..         ...+..+++|+.|++++|.+.......     +..+.++++|++++|.+....+    
T Consensus        80 ~~L~Ls~N~l~~~---------~~~~~~l~~L~~L~l~~~~~~~~~~~~-----~~~l~~l~~L~l~~n~l~~l~~----  141 (266)
T d1p9ag_          80 GTLDLSHNQLQSL---------PLLGQTLPALTVLDVSFNRLTSLPLGA-----LRGLGELQELYLKGNELKTLPP----  141 (266)
T ss_dssp             CEEECCSSCCSSC---------CCCTTTCTTCCEEECCSSCCCCCCSST-----TTTCTTCCEEECTTSCCCCCCT----
T ss_pred             ccccccccccccc---------ccccccccccccccccccccceeeccc-----cccccccccccccccccceecc----
Confidence            9999999988762         334567888999999988876633222     2346888999999998876433    


Q ss_pred             ccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEE
Q 013056          328 SGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELY  407 (450)
Q Consensus       328 ~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~  407 (450)
                             ..+..++.|+.|++++|+|+.    ..+..+..+++|++|+|++|+|+.      +|   ..+..+++|+.|+
T Consensus       142 -------~~~~~l~~l~~l~l~~N~l~~----~~~~~~~~l~~L~~L~Ls~N~L~~------lp---~~~~~~~~L~~L~  201 (266)
T d1p9ag_         142 -------GLLTPTPKLEKLSLANNNLTE----LPAGLLNGLENLDTLLLQENSLYT------IP---KGFFGSHLLPFAF  201 (266)
T ss_dssp             -------TTTTTCTTCCEEECTTSCCSC----CCTTTTTTCTTCCEEECCSSCCCC------CC---TTTTTTCCCSEEE
T ss_pred             -------ccccccccchhcccccccccc----cCccccccccccceeecccCCCcc------cC---hhHCCCCCCCEEE
Confidence                   233356888999999998886    234457788899999999999886      55   4566678899999


Q ss_pred             ccCCCCChh-HHHHHHHHHhc
Q 013056          408 LENCELSGR-GVSQLLDTLST  427 (450)
Q Consensus       408 L~~n~l~~~-g~~~l~~~l~~  427 (450)
                      |++|.+... ....+...+..
T Consensus       202 L~~Np~~CdC~~~~l~~wl~~  222 (266)
T d1p9ag_         202 LHGNPWLCNCEILYFRRWLQD  222 (266)
T ss_dssp             CCSCCBCCSGGGHHHHHHHHH
T ss_pred             ecCCCCCCCcchHHHHHHHHh
Confidence            998887642 12235555544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.9e-18  Score=157.01  Aligned_cols=177  Identities=20%  Similarity=0.205  Sum_probs=101.4

Q ss_pred             CCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChh
Q 013056          213 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD  292 (450)
Q Consensus       213 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  292 (450)
                      +++++|+|++|.|+......+..        +++|++|+|++|.++...          .++.+++|++|+|++|+++..
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~--------l~~L~~L~L~~N~l~~l~----------~~~~l~~L~~L~Ls~N~l~~~   92 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMP--------YTRLTQLNLDRAELTKLQ----------VDGTLPVLGTLDLSHNQLQSL   92 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTT--------CTTCCEEECTTSCCCEEE----------CCSCCTTCCEEECCSSCCSSC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhc--------cccccccccccccccccc----------ccccccccccccccccccccc
Confidence            35677777777666443333322        466777777777665411          124566677777777766542


Q ss_pred             HHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHH-HHhhcCCCC
Q 013056          293 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLG-SALVHIPNL  371 (450)
Q Consensus       293 ~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L  371 (450)
                       +..     +..+++|+.|++++|.+....+           ..+..+.+++.|++++|.++.     ++ ..+..+++|
T Consensus        93 -~~~-----~~~l~~L~~L~l~~~~~~~~~~-----------~~~~~l~~l~~L~l~~n~l~~-----l~~~~~~~l~~l  150 (266)
T d1p9ag_          93 -PLL-----GQTLPALTVLDVSFNRLTSLPL-----------GALRGLGELQELYLKGNELKT-----LPPGLLTPTPKL  150 (266)
T ss_dssp             -CCC-----TTTCTTCCEEECCSSCCCCCCS-----------STTTTCTTCCEEECTTSCCCC-----CCTTTTTTCTTC
T ss_pred             -ccc-----cccccccccccccccccceeec-----------cccccccccccccccccccce-----eccccccccccc
Confidence             111     2335667777777766654322           222345666777777776664     22 234456667


Q ss_pred             CEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCC
Q 013056          372 EILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG  443 (450)
Q Consensus       372 ~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~  443 (450)
                      +.|++++|+|+.      ++.  ..+..+++|++|+|++|+|+.     +++.+.. ..+|+.|+|++|++.
T Consensus       151 ~~l~l~~N~l~~------~~~--~~~~~l~~L~~L~Ls~N~L~~-----lp~~~~~-~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         151 EKLSLANNNLTE------LPA--GLLNGLENLDTLLLQENSLYT-----IPKGFFG-SHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CEEECTTSCCSC------CCT--TTTTTCTTCCEEECCSSCCCC-----CCTTTTT-TCCCSEEECCSCCBC
T ss_pred             hhcccccccccc------cCc--cccccccccceeecccCCCcc-----cChhHCC-CCCCCEEEecCCCCC
Confidence            777777776665      221  345566677777777777665     4444444 234777777777654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.65  E-value=2.9e-19  Score=168.69  Aligned_cols=205  Identities=18%  Similarity=0.206  Sum_probs=136.6

Q ss_pred             chhhccccc-Ccch-hhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcc
Q 013056          163 YARCLRLQN-ALCV-EETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK  240 (450)
Q Consensus       163 ~l~~l~L~~-~~~~-~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~  240 (450)
                      .++.+++++ +.+. .+|..+.++++|++|+|++|.+.......    +..+..|+.+++++|.+....+..+..     
T Consensus        77 ~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~----~~~~~~L~~l~l~~N~~~~~~p~~l~~-----  147 (313)
T d1ogqa_          77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF----LSQIKTLVTLDFSYNALSGTLPPSISS-----  147 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG----GGGCTTCCEEECCSSEEESCCCGGGGG-----
T ss_pred             cccccccccccccccccccccccccccchhhhcccccccccccc----ccchhhhcccccccccccccCchhhcc-----
Confidence            455556654 3333 56777778888888888888755443322    456778888888888666544444333     


Q ss_pred             ccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCC-CEEecCCCCCChhHHHHHHH------------------HH
Q 013056          241 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSL-CSLKLRHCHLDRDFGRMVFS------------------SL  301 (450)
Q Consensus       241 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L-~~L~Ls~n~l~~~~~~~l~~------------------~L  301 (450)
                         ++.++.+++++|.+.+        .++..+..+..+ +.+++++|++++..+..+..                  ..
T Consensus       148 ---l~~L~~l~l~~n~l~~--------~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~  216 (313)
T d1ogqa_         148 ---LPNLVGITFDGNRISG--------AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL  216 (313)
T ss_dssp             ---CTTCCEEECCSSCCEE--------ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGG
T ss_pred             ---Ccccceeecccccccc--------ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence               5778888888887765        344455555554 66777766665433332210                  11


Q ss_pred             hhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCC
Q 013056          302 LEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTI  381 (450)
Q Consensus       302 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l  381 (450)
                      ...+++++.+++++|.+.+..            ..+..+++|+.|+|++|+++.    .+|+.+.++++|++|+|++|+|
T Consensus       217 ~~~~~~l~~l~~~~~~l~~~~------------~~~~~~~~L~~L~Ls~N~l~g----~iP~~l~~L~~L~~L~Ls~N~l  280 (313)
T d1ogqa_         217 FGSDKNTQKIHLAKNSLAFDL------------GKVGLSKNLNGLDLRNNRIYG----TLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             CCTTSCCSEEECCSSEECCBG------------GGCCCCTTCCEEECCSSCCEE----CCCGGGGGCTTCCEEECCSSEE
T ss_pred             ccccccccccccccccccccc------------cccccccccccccCccCeecc----cCChHHhCCCCCCEEECcCCcc
Confidence            123466777777777666421            223356899999999999986    4899999999999999999999


Q ss_pred             ChhhHHHHHHHHHhhcCCCCCcCEEEccCCC
Q 013056          382 EDDGIRSLIPYFVQASERCNPLVELYLENCE  412 (450)
Q Consensus       382 ~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~  412 (450)
                      +..     +|    .+..+++|+.+++++|+
T Consensus       281 ~g~-----iP----~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         281 CGE-----IP----QGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             EEE-----CC----CSTTGGGSCGGGTCSSS
T ss_pred             ccc-----CC----CcccCCCCCHHHhCCCc
Confidence            853     55    24556777777888776

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.7e-17  Score=154.10  Aligned_cols=231  Identities=16%  Similarity=0.074  Sum_probs=168.3

Q ss_pred             cchhhcccccCcchhhhHh-hhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccC-CCCChhHHHHHHHHHhc
Q 013056          162 HYARCLRLQNALCVEETCQ-LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLH-CKLSPSFVEGICRSLCS  239 (450)
Q Consensus       162 ~~l~~l~L~~~~~~~~~~~-l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~  239 (450)
                      ..++.|+|++|.+..++.. +.++++|++|++++|.+.......    +..+..+..+.... +.++......+..    
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~----~~~~~~~~~l~~~~~~~~~~l~~~~~~~----  103 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA----FTGLALLEQLDLSDNAQLRSVDPATFHG----  103 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSCTTCCCCCTTTTTT----
T ss_pred             CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccc----ccccccccccccccccccccccchhhcc----
Confidence            3567788999988887765 458899999999999865443322    45677888887654 4665443333332    


Q ss_pred             cccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCC
Q 013056          240 KRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG  319 (450)
Q Consensus       240 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~  319 (450)
                          +++|++|++++|.+...        ....+...++|+.+++++|.++...+..     +..+++|++|++++|.+.
T Consensus       104 ----l~~L~~L~l~~n~~~~~--------~~~~~~~~~~L~~l~l~~N~l~~i~~~~-----f~~~~~L~~L~l~~N~l~  166 (284)
T d1ozna_         104 ----LGRLHTLHLDRCGLQEL--------GPGLFRGLAALQYLYLQDNALQALPDDT-----FRDLGNLTHLFLHGNRIS  166 (284)
T ss_dssp             ----CTTCCEEECTTSCCCCC--------CTTTTTTCTTCCEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSSCCC
T ss_pred             ----cccCCEEecCCcccccc--------cccccchhcccchhhhccccccccChhH-----hccccchhhcccccCccc
Confidence                68999999999998762        3345567789999999999998744333     245789999999999998


Q ss_pred             CcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCC
Q 013056          320 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASER  399 (450)
Q Consensus       320 ~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~  399 (450)
                      ...+           ..+..+++|+.+++++|+++.    ..|..+..+++|++||+++|.++..     .+   ..+..
T Consensus       167 ~l~~-----------~~f~~l~~L~~l~l~~N~l~~----i~~~~f~~l~~L~~L~l~~N~i~~~-----~~---~~~~~  223 (284)
T d1ozna_         167 SVPE-----------RAFRGLHSLDRLLLHQNRVAH----VHPHAFRDLGRLMTLYLFANNLSAL-----PT---EALAP  223 (284)
T ss_dssp             EECT-----------TTTTTCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCSCC-----CH---HHHTT
T ss_pred             ccch-----------hhhccccccchhhhhhccccc----cChhHhhhhhhcccccccccccccc-----cc---ccccc
Confidence            6444           344477999999999999997    3477889999999999999999873     22   55778


Q ss_pred             CCCcCEEEccCCCCChh-HHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056          400 CNPLVELYLENCELSGR-GVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       400 ~~~L~~L~L~~n~l~~~-g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                      +++|++|++++|.+... +...+...+.+       +....+++..+.|
T Consensus       224 ~~~L~~L~l~~N~l~C~C~~~~l~~~l~~-------~~~~~~~~~C~~p  265 (284)
T d1ozna_         224 LRALQYLRLNDNPWVCDCRARPLWAWLQK-------FRGSSSEVPCSLP  265 (284)
T ss_dssp             CTTCCEEECCSSCEECSGGGHHHHHHHHH-------CCSEECCCBEEES
T ss_pred             ccccCEEEecCCCCCCCccchHHHHHHHh-------CcCCCCceEeCCc
Confidence            89999999999987642 23334444444       3334455554444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.65  E-value=2.5e-17  Score=154.60  Aligned_cols=234  Identities=18%  Similarity=0.178  Sum_probs=153.1

Q ss_pred             chhhcccccCcchhhhHh-hhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056          163 YARCLRLQNALCVEETCQ-LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR  241 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~-l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~  241 (450)
                      .++.|++++|.+..++.. +.++++|++|++++|.+....+..    +.++++|+.|++++|+|+.....          
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~----f~~l~~L~~L~l~~n~l~~l~~~----------   97 (305)
T d1xkua_          32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA----FAPLVKLERLYLSKNQLKELPEK----------   97 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT----TTTCTTCCEEECCSSCCSBCCSS----------
T ss_pred             CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhh----hhCCCccCEecccCCccCcCccc----------
Confidence            566677777777776653 446777888888777754432222    45677777888877776632110          


Q ss_pred             cCCCCeeEEEcCCCCCCCCCchhh------------------HHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhh
Q 013056          242 KRIHKIENLSIDISSFIENCPSSV------------------VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLE  303 (450)
Q Consensus       242 ~~~~~L~~L~L~~n~i~~~~~~~~------------------~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~  303 (450)
                       ....+..|.+..|.+.......+                  .......+..+++|+.+++++|.+.. .+..       
T Consensus        98 -~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~-------  168 (305)
T d1xkua_          98 -MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQG-------  168 (305)
T ss_dssp             -CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSS-------
T ss_pred             -hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCcc-------
Confidence             03445566666555544211100                  00122345667788888888887765 2221       


Q ss_pred             CCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCCh
Q 013056          304 ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED  383 (450)
Q Consensus       304 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~  383 (450)
                      ..++|++|++++|.+....+        ..+   ..++.++.|++++|.++..    .+..+..+++|++|+|++|+|+.
T Consensus       169 ~~~~L~~L~l~~n~~~~~~~--------~~~---~~~~~l~~L~~s~n~l~~~----~~~~~~~l~~L~~L~L~~N~L~~  233 (305)
T d1xkua_         169 LPPSLTELHLDGNKITKVDA--------ASL---KGLNNLAKLGLSFNSISAV----DNGSLANTPHLRELHLNNNKLVK  233 (305)
T ss_dssp             CCTTCSEEECTTSCCCEECT--------GGG---TTCTTCCEEECCSSCCCEE----CTTTGGGSTTCCEEECCSSCCSS
T ss_pred             cCCccCEEECCCCcCCCCCh--------hHh---hcccccccccccccccccc----ccccccccccceeeecccccccc
Confidence            25778888888888775433        333   3668899999999999872    35567889999999999999986


Q ss_pred             hhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHH--HHHHhcCCCCCcEEECcCCCCCc
Q 013056          384 DGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL--LDTLSTLRRPPTSLSIADNNLGR  444 (450)
Q Consensus       384 ~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l--~~~l~~l~~~L~~L~L~~N~l~~  444 (450)
                            +|   ..+..+++|++|+|++|+|+..+...+  ...... ..+|+.|+|++|++..
T Consensus       234 ------lp---~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~-~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         234 ------VP---GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK-KASYSGVSLFSNPVQY  286 (305)
T ss_dssp             ------CC---TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTT-SCCCSEEECCSSSSCG
T ss_pred             ------cc---cccccccCCCEEECCCCccCccChhhccCcchhcc-cCCCCEEECCCCcCcc
Confidence                  55   567888999999999999987422211  111223 3459999999999863

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=3e-16  Score=151.45  Aligned_cols=58  Identities=14%  Similarity=0.193  Sum_probs=38.4

Q ss_pred             chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCCh
Q 013056          163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSP  227 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  227 (450)
                      .++.|++++|.+..++. +.++++|++|++++|.+....+      +.++++|+.|+++++.+++
T Consensus        67 nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~------l~~l~~L~~L~~~~~~~~~  124 (384)
T d2omza2          67 NLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP------LANLTNLTGLTLFNNQITD  124 (384)
T ss_dssp             TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCC
T ss_pred             CCCEEeCcCCcCCCCcc-ccCCcccccccccccccccccc------ccccccccccccccccccc
Confidence            45666777777666543 6677788888888877554322      4567777777777776553

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.59  E-value=1.8e-16  Score=148.57  Aligned_cols=138  Identities=20%  Similarity=0.186  Sum_probs=106.5

Q ss_pred             CCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccc
Q 013056          244 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS  323 (450)
Q Consensus       244 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~  323 (450)
                      +++|+.+++++|.++.....           ..++|++|++++|.+....+..+     ..++.++.|++++|.+.+..+
T Consensus       149 l~~L~~l~l~~n~l~~l~~~-----------~~~~L~~L~l~~n~~~~~~~~~~-----~~~~~l~~L~~s~n~l~~~~~  212 (305)
T d1xkua_         149 MKKLSYIRIADTNITTIPQG-----------LPPSLTELHLDGNKITKVDAASL-----KGLNNLAKLGLSFNSISAVDN  212 (305)
T ss_dssp             CTTCCEEECCSSCCCSCCSS-----------CCTTCSEEECTTSCCCEECTGGG-----TTCTTCCEEECCSSCCCEECT
T ss_pred             ccccCccccccCCccccCcc-----------cCCccCEEECCCCcCCCCChhHh-----hcccccccccccccccccccc
Confidence            57899999999988763321           35799999999999887655433     457899999999999987433


Q ss_pred             ccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCc
Q 013056          324 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL  403 (450)
Q Consensus       324 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L  403 (450)
                              ..+.   ++++|++|+|++|+|+.     +|.++..+++|++|+|++|+|+.-+...+.+.  ..+....+|
T Consensus       213 --------~~~~---~l~~L~~L~L~~N~L~~-----lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~--~~~~~~~~L  274 (305)
T d1xkua_         213 --------GSLA---NTPHLRELHLNNNKLVK-----VPGGLADHKYIQVVYLHNNNISAIGSNDFCPP--GYNTKKASY  274 (305)
T ss_dssp             --------TTGG---GSTTCCEEECCSSCCSS-----CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCS--SCCTTSCCC
T ss_pred             --------cccc---ccccceeeecccccccc-----cccccccccCCCEEECCCCccCccChhhccCc--chhcccCCC
Confidence                    3333   67899999999999986     88889999999999999999987322221110  234566889


Q ss_pred             CEEEccCCCCCh
Q 013056          404 VELYLENCELSG  415 (450)
Q Consensus       404 ~~L~L~~n~l~~  415 (450)
                      +.|+|++|.+..
T Consensus       275 ~~L~L~~N~~~~  286 (305)
T d1xkua_         275 SGVSLFSNPVQY  286 (305)
T ss_dssp             SEEECCSSSSCG
T ss_pred             CEEECCCCcCcc
Confidence            999999999875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=1.1e-15  Score=136.85  Aligned_cols=187  Identities=20%  Similarity=0.235  Sum_probs=132.0

Q ss_pred             cCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCc
Q 013056          183 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP  262 (450)
Q Consensus       183 ~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~  262 (450)
                      .+.+|+.|++.+|.+.+. ..     +.++++|+.|++++|.|++..+  +    ..    +.+++++++++|.++..  
T Consensus        39 ~l~~L~~L~l~~~~i~~l-~~-----l~~l~~L~~L~ls~n~i~~~~~--l----~~----l~~l~~l~~~~n~~~~i--  100 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTI-EG-----VQYLNNLIGLELKDNQITDLAP--L----KN----LTKITELELSGNPLKNV--  100 (227)
T ss_dssp             HHHTCCEEECTTSCCCCC-TT-----GGGCTTCCEEECCSSCCCCCGG--G----TT----CCSCCEEECCSCCCSCC--
T ss_pred             HcCCcCEEECCCCCCCcc-hh-----HhcCCCCcEeecCCceeecccc--c----cc----ccccccccccccccccc--
Confidence            456788888888875543 22     4678888888888888875322  1    11    67888888888887662  


Q ss_pred             hhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCc
Q 013056          263 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS  342 (450)
Q Consensus       263 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~  342 (450)
                              ..+..+++|+.++++++...+...       +...+.++.+.++.+.+....+          +.   .+++
T Consensus       101 --------~~l~~l~~L~~l~l~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~----------~~---~~~~  152 (227)
T d1h6ua2         101 --------SAIAGLQSIKTLDLTSTQITDVTP-------LAGLSNLQVLYLDLNQITNISP----------LA---GLTN  152 (227)
T ss_dssp             --------GGGTTCTTCCEEECTTSCCCCCGG-------GTTCTTCCEEECCSSCCCCCGG----------GG---GCTT
T ss_pred             --------ccccccccccccccccccccccch-------hccccchhhhhchhhhhchhhh----------hc---cccc
Confidence                    235678888888888887765322       1235788888888888765211          22   4578


Q ss_pred             eeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHH
Q 013056          343 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLL  422 (450)
Q Consensus       343 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~  422 (450)
                      |+.|++++|.+++.      ..+.++++|++|+|++|++++      ++    .+..+++|++|+|++|+|++.     +
T Consensus       153 L~~L~l~~n~~~~~------~~l~~l~~L~~L~Ls~n~l~~------l~----~l~~l~~L~~L~Ls~N~lt~i-----~  211 (227)
T d1h6ua2         153 LQYLSIGNAQVSDL------TPLANLSKLTTLKADDNKISD------IS----PLASLPNLIEVHLKNNQISDV-----S  211 (227)
T ss_dssp             CCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCC------CG----GGGGCTTCCEEECTTSCCCBC-----G
T ss_pred             cccccccccccccc------hhhcccccceecccCCCccCC------Ch----hhcCCCCCCEEECcCCcCCCC-----c
Confidence            88899988888762      236788889999999998887      43    356778899999999988873     2


Q ss_pred             HHHhcCCCCCcEEECc
Q 013056          423 DTLSTLRRPPTSLSIA  438 (450)
Q Consensus       423 ~~l~~l~~~L~~L~L~  438 (450)
                       .+..+ ++|++|+++
T Consensus       212 -~l~~l-~~L~~L~ls  225 (227)
T d1h6ua2         212 -PLANT-SNLFIVTLT  225 (227)
T ss_dssp             -GGTTC-TTCCEEEEE
T ss_pred             -ccccC-CCCCEEEee
Confidence             25564 348888886

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=3e-15  Score=144.27  Aligned_cols=193  Identities=20%  Similarity=0.228  Sum_probs=144.6

Q ss_pred             HhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCC
Q 013056          179 CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFI  258 (450)
Q Consensus       179 ~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~  258 (450)
                      .....+++++.+++++|.+....+      ....++|+.|++++|.+++..  .    +..    +++|+.|++++|.++
T Consensus       191 ~~~~~l~~~~~l~l~~n~i~~~~~------~~~~~~L~~L~l~~n~l~~~~--~----l~~----l~~L~~L~l~~n~l~  254 (384)
T d2omza2         191 SVLAKLTNLESLIATNNQISDITP------LGILTNLDELSLNGNQLKDIG--T----LAS----LTNLTDLDLANNQIS  254 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCCG--G----GGG----CTTCSEEECCSSCCC
T ss_pred             cccccccccceeeccCCccCCCCc------ccccCCCCEEECCCCCCCCcc--h----hhc----ccccchhccccCccC
Confidence            344567888999999888655432      345678999999999887642  1    221    688999999999887


Q ss_pred             CCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCC
Q 013056          259 ENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGK  338 (450)
Q Consensus       259 ~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~  338 (450)
                      +..          .+..+++|++|++++|++.+..+       +..+..++.++++.|.+.+.          ..+.   
T Consensus       255 ~~~----------~~~~~~~L~~L~l~~~~l~~~~~-------~~~~~~l~~l~~~~n~l~~~----------~~~~---  304 (384)
T d2omza2         255 NLA----------PLSGLTKLTELKLGANQISNISP-------LAGLTALTNLELNENQLEDI----------SPIS---  304 (384)
T ss_dssp             CCG----------GGTTCTTCSEEECCSSCCCCCGG-------GTTCTTCSEEECCSSCCSCC----------GGGG---
T ss_pred             CCC----------cccccccCCEeeccCcccCCCCc-------cccccccccccccccccccc----------cccc---
Confidence            721          25678899999999998876322       23468889999999988752          1123   


Q ss_pred             CCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHH
Q 013056          339 SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGV  418 (450)
Q Consensus       339 ~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~  418 (450)
                      .+++++.|++++|++++     ++ .+..+++|++|++++|+|++      ++    .+..+++|++|++++|+|++.  
T Consensus       305 ~~~~l~~L~ls~n~l~~-----l~-~l~~l~~L~~L~L~~n~l~~------l~----~l~~l~~L~~L~l~~N~l~~l--  366 (384)
T d2omza2         305 NLKNLTYLTLYFNNISD-----IS-PVSSLTKLQRLFFANNKVSD------VS----SLANLTNINWLSAGHNQISDL--  366 (384)
T ss_dssp             GCTTCSEEECCSSCCSC-----CG-GGGGCTTCCEEECCSSCCCC------CG----GGGGCTTCCEEECCSSCCCBC--
T ss_pred             hhcccCeEECCCCCCCC-----Cc-ccccCCCCCEEECCCCCCCC------Ch----hHcCCCCCCEEECCCCcCCCC--
Confidence            56889999999999987     43 37889999999999999987      43    367789999999999999873  


Q ss_pred             HHHHHHHhcCCCCCcEEECcCC
Q 013056          419 SQLLDTLSTLRRPPTSLSIADN  440 (450)
Q Consensus       419 ~~l~~~l~~l~~~L~~L~L~~N  440 (450)
                         + .+..+. +|++|+|++|
T Consensus       367 ---~-~l~~l~-~L~~L~L~~N  383 (384)
T d2omza2         367 ---T-PLANLT-RITQLGLNDQ  383 (384)
T ss_dssp             ---G-GGTTCT-TCSEEECCCE
T ss_pred             ---h-hhccCC-CCCEeeCCCC
Confidence               2 266654 4999999987

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=3.9e-15  Score=131.54  Aligned_cols=59  Identities=29%  Similarity=0.433  Sum_probs=27.6

Q ss_pred             CceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056          341 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  415 (450)
Q Consensus       341 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  415 (450)
                      +.++.+++++|.+++.      ..+..+++|+.+++++|++++      ++    .+..+++|++|+|++|+|++
T Consensus       134 ~~l~~l~~~~n~l~~~------~~~~~l~~L~~l~l~~n~l~~------i~----~l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         134 PQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISD------IV----PLAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             TTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCC------CG----GGTTCTTCCEEECCSSCCCB
T ss_pred             cccccccccccccccc------ccccccccccccccccccccc------cc----cccCCCCCCEEECCCCCCCC
Confidence            4455555555554431      123344555555555555544      21    13444555555555555544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.55  E-value=5.5e-15  Score=132.21  Aligned_cols=185  Identities=18%  Similarity=0.206  Sum_probs=144.9

Q ss_pred             chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056          163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  242 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~  242 (450)
                      .++.+.+.++.+..+ ..+.++++|++|++++|.+....+      +.++++|+.+++++|.+++..  .+..       
T Consensus        42 ~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~~------l~~l~~l~~l~~~~n~~~~i~--~l~~-------  105 (227)
T d1h6ua2          42 GITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP------LKNLTKITELELSGNPLKNVS--AIAG-------  105 (227)
T ss_dssp             TCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG------GTTCCSCCEEECCSCCCSCCG--GGTT-------
T ss_pred             CcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeecccc------ccccccccccccccccccccc--cccc-------
Confidence            456667777777765 457789999999999998665433      578899999999999887532  2222       


Q ss_pred             CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056          243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  322 (450)
Q Consensus       243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  322 (450)
                       +++|+.+.++++.+...          ..+...+.+..+.++++.+....+       +..+++|++|++++|.+.+..
T Consensus       106 -l~~L~~l~l~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~L~~L~l~~n~~~~~~  167 (227)
T d1h6ua2         106 -LQSIKTLDLTSTQITDV----------TPLAGLSNLQVLYLDLNQITNISP-------LAGLTNLQYLSIGNAQVSDLT  167 (227)
T ss_dssp             -CTTCCEEECTTSCCCCC----------GGGTTCTTCCEEECCSSCCCCCGG-------GGGCTTCCEEECCSSCCCCCG
T ss_pred             -ccccccccccccccccc----------chhccccchhhhhchhhhhchhhh-------hccccccccccccccccccch
Confidence             68999999999987662          224567899999999998876332       134789999999999987631


Q ss_pred             cccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCC
Q 013056          323 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP  402 (450)
Q Consensus       323 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~  402 (450)
                                .++   ++++|+.|+|++|++++     ++ .+..+++|++|+|++|+|++      ++    .+..+++
T Consensus       168 ----------~l~---~l~~L~~L~Ls~n~l~~-----l~-~l~~l~~L~~L~Ls~N~lt~------i~----~l~~l~~  218 (227)
T d1h6ua2         168 ----------PLA---NLSKLTTLKADDNKISD-----IS-PLASLPNLIEVHLKNNQISD------VS----PLANTSN  218 (227)
T ss_dssp             ----------GGT---TCTTCCEEECCSSCCCC-----CG-GGGGCTTCCEEECTTSCCCB------CG----GGTTCTT
T ss_pred             ----------hhc---ccccceecccCCCccCC-----Ch-hhcCCCCCCEEECcCCcCCC------Cc----ccccCCC
Confidence                      233   67899999999999986     44 37899999999999999998      43    3788899


Q ss_pred             cCEEEccC
Q 013056          403 LVELYLEN  410 (450)
Q Consensus       403 L~~L~L~~  410 (450)
                      |++|++++
T Consensus       219 L~~L~lsn  226 (227)
T d1h6ua2         219 LFIVTLTN  226 (227)
T ss_dssp             CCEEEEEE
T ss_pred             CCEEEeeC
Confidence            99999975

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.54  E-value=4.2e-14  Score=119.96  Aligned_cols=132  Identities=12%  Similarity=0.164  Sum_probs=73.0

Q ss_pred             HHHHhhcCCCCCCEEecCCC-CCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEE
Q 013056          268 ELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLL  346 (450)
Q Consensus       268 ~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L  346 (450)
                      .+.....+.++|++|+|+++ .+++.+...++.++..+ +.|++|+|++|.++    +.+...++..+.   ..+.|+.|
T Consensus         6 ~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n-~~L~~L~Ls~n~l~----~~~~~~la~~L~---~n~~L~~L   77 (167)
T d1pgva_           6 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAIS----DSEARGLIELIE---TSPSLRVL   77 (167)
T ss_dssp             HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCB----HHHHTTHHHHHH---HCSSCCEE
T ss_pred             HHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhC-Cccceeeccccccc----hhHHHHHhhhhh---hcccccce
Confidence            34445556678888888764 57777777777765443 55666666666555    233333444444   22455555


Q ss_pred             EccCCCCChhhHHHHHHHhhcCCCCCEEecCCCC---CChhhHHHHHHHHHhhcCCCCCcCEEEccCC
Q 013056          347 NLRGNNLCKADARDLGSALVHIPNLEILDISDNT---IEDDGIRSLIPYFVQASERCNPLVELYLENC  411 (450)
Q Consensus       347 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~---l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n  411 (450)
                      +|++|.|+++|+..+..++..+++|++|+|++|.   ++++|+..++    ..+..+++|+.|+++.+
T Consensus        78 ~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~----~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          78 NVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM----MAIEENESLLRVGISFA  141 (167)
T ss_dssp             ECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH----HHHHHCSSCCEEECCCC
T ss_pred             eeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHH----HHHHhCCCccEeeCcCC
Confidence            5555555555555555555555555555555543   3344444444    22334455555555444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.52  E-value=1.7e-14  Score=127.28  Aligned_cols=165  Identities=22%  Similarity=0.191  Sum_probs=130.5

Q ss_pred             CCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCch
Q 013056          184 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS  263 (450)
Q Consensus       184 ~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~  263 (450)
                      +.+|++|++++|.+.....      +..+++|++|++++|+|++...  +.        .+++|++|++++|++++    
T Consensus        45 L~~L~~L~l~~~~i~~l~~------l~~l~~L~~L~L~~n~i~~l~~--~~--------~l~~L~~L~l~~n~i~~----  104 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQG------IQYLPNVTKLFLNGNKLTDIKP--LA--------NLKNLGWLFLDENKVKD----  104 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTT------GGGCTTCCEEECCSSCCCCCGG--GT--------TCTTCCEEECCSSCCCC----
T ss_pred             hcCccEEECcCCCCCCchh------HhhCCCCCEEeCCCccccCccc--cc--------cCccccccccccccccc----
Confidence            4689999999998655322      4678999999999999986432  21        16899999999999987    


Q ss_pred             hhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCce
Q 013056          264 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL  343 (450)
Q Consensus       264 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L  343 (450)
                           ++ .+..+++|+.|++++|.+....  .     +..++.++.+++++|.+++.          ..+.   .+++|
T Consensus       105 -----l~-~l~~l~~L~~L~l~~~~~~~~~--~-----l~~l~~l~~l~~~~n~l~~~----------~~~~---~l~~L  158 (210)
T d1h6ta2         105 -----LS-SLKDLKKLKSLSLEHNGISDIN--G-----LVHLPQLESLYLGNNKITDI----------TVLS---RLTKL  158 (210)
T ss_dssp             -----GG-GGTTCTTCCEEECTTSCCCCCG--G-----GGGCTTCCEEECCSSCCCCC----------GGGG---GCTTC
T ss_pred             -----cc-cccccccccccccccccccccc--c-----cccccccccccccccccccc----------cccc---ccccc
Confidence                 22 4678999999999999886521  1     23478999999999998862          1223   56899


Q ss_pred             eEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccC
Q 013056          344 RLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLEN  410 (450)
Q Consensus       344 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~  410 (450)
                      +++++++|++++     ++ .+..+++|++|+|++|+|++      ++    .+..+++|++|+|++
T Consensus       159 ~~l~l~~n~l~~-----i~-~l~~l~~L~~L~Ls~N~i~~------l~----~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         159 DTLSLEDNQISD-----IV-PLAGLTKLQNLYLSKNHISD------LR----ALAGLKNLDVLELFS  209 (210)
T ss_dssp             SEEECCSSCCCC-----CG-GGTTCTTCCEEECCSSCCCB------CG----GGTTCTTCSEEEEEE
T ss_pred             cccccccccccc-----cc-cccCCCCCCEEECCCCCCCC------Ch----hhcCCCCCCEEEccC
Confidence            999999999986     43 38899999999999999997      53    477889999999974

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.52  E-value=1.7e-14  Score=126.24  Aligned_cols=126  Identities=19%  Similarity=0.271  Sum_probs=74.3

Q ss_pred             CCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccc
Q 013056          244 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS  323 (450)
Q Consensus       244 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~  323 (450)
                      +++|++|++++|++++.         . .++++++|++|++++|.+....+       +..++.|+.|++++|.+...  
T Consensus        61 l~nL~~L~Ls~N~l~~~---------~-~l~~l~~L~~L~l~~n~~~~~~~-------l~~l~~L~~L~l~~~~~~~~--  121 (199)
T d2omxa2          61 LNNLTQINFSNNQLTDI---------T-PLKNLTKLVDILMNNNQIADITP-------LANLTNLTGLTLFNNQITDI--  121 (199)
T ss_dssp             CTTCCEEECCSSCCCCC---------G-GGTTCTTCCEEECCSSCCCCCGG-------GTTCTTCSEEECCSSCCCCC--
T ss_pred             CCCcCcCccccccccCc---------c-cccCCcccccccccccccccccc-------cccccccccccccccccccc--
Confidence            45566666666665551         1 14566667777776666554211       13356677777776665531  


Q ss_pred             ccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCc
Q 013056          324 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL  403 (450)
Q Consensus       324 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L  403 (450)
                              ..+.   .+++|+.|++++|++..     ++ .+..+++|+.|++++|++++      +    ..+..+++|
T Consensus       122 --------~~~~---~l~~L~~L~l~~n~l~~-----~~-~l~~~~~L~~L~l~~n~l~~------l----~~l~~l~~L  174 (199)
T d2omxa2         122 --------DPLK---NLTNLNRLELSSNTISD-----IS-ALSGLTSLQQLNFSSNQVTD------L----KPLANLTTL  174 (199)
T ss_dssp             --------GGGT---TCTTCSEEECCSSCCCC-----CG-GGTTCTTCSEEECCSSCCCC------C----GGGTTCTTC
T ss_pred             --------cccc---hhhhhHHhhhhhhhhcc-----cc-cccccccccccccccccccC------C----ccccCCCCC
Confidence                    1122   45667777777776664     22 35666777777777777766      3    235566777


Q ss_pred             CEEEccCCCCCh
Q 013056          404 VELYLENCELSG  415 (450)
Q Consensus       404 ~~L~L~~n~l~~  415 (450)
                      ++|++++|+|++
T Consensus       175 ~~L~ls~N~i~~  186 (199)
T d2omxa2         175 ERLDISSNKVSD  186 (199)
T ss_dssp             CEEECCSSCCCC
T ss_pred             CEEECCCCCCCC
Confidence            777777777666

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.52  E-value=1.6e-14  Score=126.33  Aligned_cols=162  Identities=22%  Similarity=0.307  Sum_probs=102.8

Q ss_pred             cCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCc
Q 013056          183 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP  262 (450)
Q Consensus       183 ~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~  262 (450)
                      .+.++++|+++++.+... ..     +..+++|++|++++|+|++..+  +..        +++|++|++++|.+...  
T Consensus        38 ~l~~l~~L~l~~~~i~~l-~~-----l~~l~nL~~L~Ls~N~l~~~~~--l~~--------l~~L~~L~l~~n~~~~~--   99 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI-DG-----VEYLNNLTQINFSNNQLTDITP--LKN--------LTKLVDILMNNNQIADI--   99 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC-TT-----GGGCTTCCEEECCSSCCCCCGG--GTT--------CTTCCEEECCSSCCCCC--
T ss_pred             HhcCCCEEECCCCCCCCc-cc-----cccCCCcCcCccccccccCccc--ccC--------Ccccccccccccccccc--
Confidence            346777788777775432 11     3567778888888877765321  211        57777888877776551  


Q ss_pred             hhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCc
Q 013056          263 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS  342 (450)
Q Consensus       263 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~  342 (450)
                              ..++++++|+.|++++|.+....+       +..+++|+.|++++|.+...          ..+.   .+++
T Consensus       100 --------~~l~~l~~L~~L~l~~~~~~~~~~-------~~~l~~L~~L~l~~n~l~~~----------~~l~---~~~~  151 (199)
T d2omxa2         100 --------TPLANLTNLTGLTLFNNQITDIDP-------LKNLTNLNRLELSSNTISDI----------SALS---GLTS  151 (199)
T ss_dssp             --------GGGTTCTTCSEEECCSSCCCCCGG-------GTTCTTCSEEECCSSCCCCC----------GGGT---TCTT
T ss_pred             --------cccccccccccccccccccccccc-------cchhhhhHHhhhhhhhhccc----------cccc---cccc
Confidence                    125667778888887776655221       13467778888877776641          1122   5577


Q ss_pred             eeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEE
Q 013056          343 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVEL  406 (450)
Q Consensus       343 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L  406 (450)
                      |+.|++.+|++++     ++ .++++++|++|++++|+|++      ++    .+..+++|++|
T Consensus       152 L~~L~l~~n~l~~-----l~-~l~~l~~L~~L~ls~N~i~~------i~----~l~~L~~L~~L  199 (199)
T d2omxa2         152 LQQLNFSSNQVTD-----LK-PLANLTTLERLDISSNKVSD------IS----VLAKLTNLESL  199 (199)
T ss_dssp             CSEEECCSSCCCC-----CG-GGTTCTTCCEEECCSSCCCC------CG----GGGGCTTCSEE
T ss_pred             ccccccccccccC-----Cc-cccCCCCCCEEECCCCCCCC------Cc----cccCCCCCCcC
Confidence            7778888777775     32 36777778888888887776      32    24555666654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.48  E-value=4.8e-13  Score=113.20  Aligned_cols=134  Identities=13%  Similarity=0.085  Sum_probs=74.6

Q ss_pred             HHHHHhhcCCCCCCEEecCC-CCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeE
Q 013056          267 VELVSFLSSGRSLCSLKLRH-CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRL  345 (450)
Q Consensus       267 ~~l~~~l~~~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~  345 (450)
                      +.+.....+.++|++|+|++ +.+++.+...++.++.. .++|++|++++|.+++    .+...+...+.   ..+.++.
T Consensus         7 ~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~-n~~L~~L~Ls~n~l~~----~~~~~L~~~l~---~~~~l~~   78 (166)
T d1io0a_           7 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKT-NTYVKKFSIVGTRSND----PVAFALAEMLK---VNNTLKS   78 (166)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTT-CCSCCEEECTTSCCCH----HHHHHHHHHHH---HCSSCCE
T ss_pred             HHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhc-CCccCeeeccCCcccH----HHHHHHHHHHh---hcccchh
Confidence            34555566778888888887 46888788777777644 3556666666555552    22333333433   2345555


Q ss_pred             EEccCCCCChhhHHHHHHHhhcCCCCCEEec--CCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCC
Q 013056          346 LNLRGNNLCKADARDLGSALVHIPNLEILDI--SDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE  412 (450)
Q Consensus       346 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L--s~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~  412 (450)
                      +++++|.++++|+..+..++..+++|+.++|  ++|.+++.|+.+++..    +..+++|+.|+++.+.
T Consensus        79 l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~----L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          79 LNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM----LEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             EECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH----HHHCSSCCEEECCCSS
T ss_pred             hhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHH----HHhCCCcCEEeCcCCC
Confidence            5555555555555555555555555554333  3445555555555432    3334555555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.48  E-value=3.6e-13  Score=114.01  Aligned_cols=136  Identities=13%  Similarity=0.214  Sum_probs=112.3

Q ss_pred             HHHHHHHhhCCCCCcEEeccCC-CCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCE
Q 013056          295 RMVFSSLLEASSSLSILDLSGN-SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEI  373 (450)
Q Consensus       295 ~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  373 (450)
                      ....+.+..+.++|++|+|+++ .+++    .+...+..++.   ..+.|++|+|++|.++++++..+++.+..+++|++
T Consensus         4 ~~~l~~l~~n~~~L~~L~L~~~~~i~~----~~~~~l~~~L~---~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~   76 (167)
T d1pgva_           4 ESCINRLREDDTDLKEVNINNMKRVSK----ERIRSLIEAAC---NSKHIEKFSLANTAISDSEARGLIELIETSPSLRV   76 (167)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTCCSSCH----HHHHHHHHHHT---TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCE
T ss_pred             HHHHHHHHhCCCCCcEEEeCCCCCCCH----HHHHHHHHHHh---hCCccceeeccccccchhHHHHHhhhhhhcccccc
Confidence            3445566677899999999975 4663    33444555555   55889999999999999999999999999999999


Q ss_pred             EecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCC---CChhHHHHHHHHHhcCCCCCcEEECcCCCC
Q 013056          374 LDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE---LSGRGVSQLLDTLSTLRRPPTSLSIADNNL  442 (450)
Q Consensus       374 L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~---l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l  442 (450)
                      |+|++|.|+++|+..++    .++..+++|++|++++|.   +++.|+..+++.+.. +++|+.|+++.+..
T Consensus        77 L~L~~n~i~~~g~~~l~----~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~-n~sL~~l~l~~~~~  143 (167)
T d1pgva_          77 LNVESNFLTPELLARLL----RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEE-NESLLRVGISFASM  143 (167)
T ss_dssp             EECCSSBCCHHHHHHHH----HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHH-CSSCCEEECCCCCH
T ss_pred             eeeehhhcchHHHHHHH----HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHh-CCCccEeeCcCCCc
Confidence            99999999999999988    567888999999999874   677888999999998 78899999987754

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.36  E-value=8.2e-12  Score=105.43  Aligned_cols=139  Identities=14%  Similarity=0.089  Sum_probs=95.1

Q ss_pred             HHHHHHHHHhcCCCccEEEccC-CCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCC
Q 013056          201 VQALCKLLIQNSETLASLEFLH-CKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSL  279 (450)
Q Consensus       201 ~~~l~~~l~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L  279 (450)
                      +...+..+..+.+.|++|+|++ +.|++.++..++.++..                                    +++|
T Consensus         5 i~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~------------------------------------n~~L   48 (166)
T d1io0a_           5 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKT------------------------------------NTYV   48 (166)
T ss_dssp             HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTT------------------------------------CCSC
T ss_pred             HHHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhc------------------------------------CCcc
Confidence            4555666677888899999987 46888888777776543                                    4555


Q ss_pred             CEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEE--ccCCCCChhh
Q 013056          280 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLN--LRGNNLCKAD  357 (450)
Q Consensus       280 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~--L~~n~l~~~~  357 (450)
                      ++|++++|.+++.+...++..+.. .++++.+++++|.+++    .+...+...+.   ..++|+.++  ++.|.++++|
T Consensus        49 ~~L~Ls~n~l~~~~~~~L~~~l~~-~~~l~~l~l~~~~~~~----~g~~~l~~~l~---~~~~L~~l~L~l~~n~i~~~~  120 (166)
T d1io0a_          49 KKFSIVGTRSNDPVAFALAEMLKV-NNTLKSLNVESNFISG----SGILALVEALQ---SNTSLIELRIDNQSQPLGNNV  120 (166)
T ss_dssp             CEEECTTSCCCHHHHHHHHHHHHH-CSSCCEEECCSSCCCH----HHHHHHHHGGG---GCSSCCEEECCCCSSCCCHHH
T ss_pred             CeeeccCCcccHHHHHHHHHHHhh-cccchhhhhccccccc----hhHHHHHHHHH---hCccccEEeeccCCCcCcHHH
Confidence            666666666666666666655544 3566666666666552    22333334444   346777654  4677999999


Q ss_pred             HHHHHHHhhcCCCCCEEecCCCCCCh
Q 013056          358 ARDLGSALVHIPNLEILDISDNTIED  383 (450)
Q Consensus       358 ~~~l~~~l~~~~~L~~L~Ls~N~l~~  383 (450)
                      +..++..+..+++|++|+++.+....
T Consensus       121 ~~~La~~L~~n~~L~~L~l~~~~~~~  146 (166)
T d1io0a_         121 EMEIANMLEKNTTLLKFGYHFTQQGP  146 (166)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHHHhCCCcCEEeCcCCCCcH
Confidence            99999999999999999998876543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=5.1e-13  Score=107.07  Aligned_cols=103  Identities=27%  Similarity=0.321  Sum_probs=51.4

Q ss_pred             CEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHH
Q 013056          280 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADAR  359 (450)
Q Consensus       280 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~  359 (450)
                      +.|+|++|+++.  ..    . +..+.+|++|++++|.++.         +|..++   .+++|++|++++|.|++    
T Consensus         1 R~L~Ls~n~l~~--l~----~-l~~l~~L~~L~ls~N~l~~---------lp~~~~---~l~~L~~L~l~~N~i~~----   57 (124)
T d1dcea3           1 RVLHLAHKDLTV--LC----H-LEQLLLVTHLDLSHNRLRA---------LPPALA---ALRCLEVLQASDNALEN----   57 (124)
T ss_dssp             SEEECTTSCCSS--CC----C-GGGGTTCCEEECCSSCCCC---------CCGGGG---GCTTCCEEECCSSCCCC----
T ss_pred             CEEEcCCCCCCC--Cc----c-cccCCCCCEEECCCCccCc---------chhhhh---hhhcccccccccccccc----
Confidence            345666665542  21    1 1334556666666665553         223333   33555666666665554    


Q ss_pred             HHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCC
Q 013056          360 DLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELS  414 (450)
Q Consensus       360 ~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~  414 (450)
                       ++ .+..+++|++|++++|+|++      ++.+ ..+..+++|+.|++++|+++
T Consensus        58 -l~-~~~~l~~L~~L~l~~N~i~~------~~~~-~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          58 -VD-GVANLPRLQELLLCNNRLQQ------SAAI-QPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             -CG-GGTTCSSCCEEECCSSCCCS------SSTT-GGGGGCTTCCEEECTTSGGG
T ss_pred             -cC-ccccccccCeEECCCCccCC------CCCc-hhhcCCCCCCEEECCCCcCC
Confidence             32 35555566666666665554      2111 22444555666666665554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.32  E-value=1.9e-13  Score=118.61  Aligned_cols=157  Identities=16%  Similarity=0.092  Sum_probs=112.2

Q ss_pred             CeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccccc
Q 013056          246 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY  325 (450)
Q Consensus       246 ~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~  325 (450)
                      ..+.++.+++.++...         ..+  .+++++|+|++|+|+.......    +..+++|++|+|++|.+....+  
T Consensus         9 ~~~~v~Cs~~~L~~iP---------~~l--p~~l~~L~Ls~N~i~~~~~~~~----f~~l~~L~~L~L~~N~i~~~~~--   71 (192)
T d1w8aa_           9 EGTTVDCTGRGLKEIP---------RDI--PLHTTELLLNDNELGRISSDGL----FGRLPHLVKLELKRNQLTGIEP--   71 (192)
T ss_dssp             ETTEEECTTSCCSSCC---------SCC--CTTCSEEECCSCCCCSBCCSCS----GGGCTTCCEEECCSSCCCCBCT--
T ss_pred             cCCEEEEeCCCcCccC---------CCC--CCCCCEEEeCCCCCcccccccc----cCCCceEeeeeccccccccccc--
Confidence            4568889999888732         212  2589999999999975332222    3457999999999999987544  


Q ss_pred             CcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCE
Q 013056          326 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVE  405 (450)
Q Consensus       326 ~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~  405 (450)
                               ..+..+++|+.|+|++|+|+.    ..+.+|.++++|++|+|++|+|+.      ++.  ++|..+++|++
T Consensus        72 ---------~~~~~~~~L~~L~Ls~N~l~~----l~~~~F~~l~~L~~L~L~~N~l~~------i~~--~~f~~l~~L~~  130 (192)
T d1w8aa_          72 ---------NAFEGASHIQELQLGENKIKE----ISNKMFLGLHQLKTLNLYDNQISC------VMP--GSFEHLNSLTS  130 (192)
T ss_dssp             ---------TTTTTCTTCCEEECCSCCCCE----ECSSSSTTCTTCCEEECCSSCCCE------ECT--TSSTTCTTCCE
T ss_pred             ---------cccccccccceeeeccccccc----cCHHHHhCCCcccccccCCccccc------cCH--HHhcCCccccc
Confidence                     444467899999999999997    224467889999999999999987      432  67888899999


Q ss_pred             EEccCCCCChh-HHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056          406 LYLENCELSGR-GVSQLLDTLSTLRRPPTSLSIADNNLGRFCA  447 (450)
Q Consensus       406 L~L~~n~l~~~-g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~  447 (450)
                      |+|++|.+... ....+...       ++.+.+..|.+....|
T Consensus       131 l~L~~N~~~~~~~~~~~~~~-------l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_         131 LNLASNPFNCNCHLAWFAEW-------LRKKSLNGGAARCGAP  166 (192)
T ss_dssp             EECTTCCBCCSGGGHHHHHH-------HHHHCCSGGGCBBCSS
T ss_pred             ccccccccccccchHHHhhh-------hhhhcccCCCeEeCCC
Confidence            99999997642 22223333       3334455666654443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.7e-13  Score=113.29  Aligned_cols=110  Identities=17%  Similarity=0.248  Sum_probs=64.9

Q ss_pred             CCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCC
Q 013056          275 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLC  354 (450)
Q Consensus       275 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~  354 (450)
                      +..++++|+|++|+|+.. +. +    ...+++|+.|+|++|.|...             ..+..+++|++|++++|+|+
T Consensus        16 n~~~lr~L~L~~n~I~~i-~~-~----~~~l~~L~~L~Ls~N~i~~l-------------~~~~~l~~L~~L~ls~N~i~   76 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVI-EN-L----GATLDQFDAIDFSDNEIRKL-------------DGFPLLRRLKTLLVNNNRIC   76 (162)
T ss_dssp             CTTSCEEEECTTSCCCSC-CC-G----GGGTTCCSEEECCSSCCCEE-------------CCCCCCSSCCEEECCSSCCC
T ss_pred             CcCcCcEEECCCCCCCcc-Cc-c----ccccccCCEEECCCCCCCcc-------------CCcccCcchhhhhccccccc
Confidence            445666677777766552 11 1    22356677777777776631             22335567777777777776


Q ss_pred             hhhHHHHHH-HhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056          355 KADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  415 (450)
Q Consensus       355 ~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  415 (450)
                      .     ++. .+..+++|++|++++|+|++      ++.+ ..+..+++|++|++++|.++.
T Consensus        77 ~-----l~~~~~~~l~~L~~L~L~~N~i~~------~~~l-~~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          77 R-----IGEGLDQALPDLTELILTNNSLVE------LGDL-DPLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             E-----ECSCHHHHCTTCCEEECCSCCCCC------GGGG-GGGGGCTTCCEEECCSSGGGG
T ss_pred             C-----CCccccccccccccceeccccccc------cccc-cccccccccchhhcCCCcccc
Confidence            5     332 23456777777777777765      2211 235556777777777777655

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=1.1e-12  Score=105.17  Aligned_cols=104  Identities=23%  Similarity=0.288  Sum_probs=68.1

Q ss_pred             eEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCc
Q 013056          248 ENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDR  327 (450)
Q Consensus       248 ~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~  327 (450)
                      +.|++++|.++...          .+..+++|++|++++|.++. .+..+     ..+++|++|++++|.+++       
T Consensus         1 R~L~Ls~n~l~~l~----------~l~~l~~L~~L~ls~N~l~~-lp~~~-----~~l~~L~~L~l~~N~i~~-------   57 (124)
T d1dcea3           1 RVLHLAHKDLTVLC----------HLEQLLLVTHLDLSHNRLRA-LPPAL-----AALRCLEVLQASDNALEN-------   57 (124)
T ss_dssp             SEEECTTSCCSSCC----------CGGGGTTCCEEECCSSCCCC-CCGGG-----GGCTTCCEEECCSSCCCC-------
T ss_pred             CEEEcCCCCCCCCc----------ccccCCCCCEEECCCCccCc-chhhh-----hhhhcccccccccccccc-------
Confidence            46778888777621          25567778888888887765 33322     336778888888887775       


Q ss_pred             ccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCCh
Q 013056          328 SGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED  383 (450)
Q Consensus       328 ~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~  383 (450)
                        ++ .+.   .+++|++|++++|+|++-.   -...+..+++|++|++++|++++
T Consensus        58 --l~-~~~---~l~~L~~L~l~~N~i~~~~---~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          58 --VD-GVA---NLPRLQELLLCNNRLQQSA---AIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             --CG-GGT---TCSSCCEEECCSSCCCSSS---TTGGGGGCTTCCEEECTTSGGGG
T ss_pred             --cC-ccc---cccccCeEECCCCccCCCC---CchhhcCCCCCCEEECCCCcCCc
Confidence              21 233   5677888888888777521   01346677788888888887754

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.26  E-value=7.1e-13  Score=114.99  Aligned_cols=177  Identities=14%  Similarity=0.090  Sum_probs=123.6

Q ss_pred             CccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhH
Q 013056          214 TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDF  293 (450)
Q Consensus       214 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  293 (450)
                      ..+.++.++++++ ..+..+          ..++++|+|++|.|+...       ....+.++++|++|+|++|.+....
T Consensus         9 ~~~~v~Cs~~~L~-~iP~~l----------p~~l~~L~Ls~N~i~~~~-------~~~~f~~l~~L~~L~L~~N~i~~~~   70 (192)
T d1w8aa_           9 EGTTVDCTGRGLK-EIPRDI----------PLHTTELLLNDNELGRIS-------SDGLFGRLPHLVKLELKRNQLTGIE   70 (192)
T ss_dssp             ETTEEECTTSCCS-SCCSCC----------CTTCSEEECCSCCCCSBC-------CSCSGGGCTTCCEEECCSSCCCCBC
T ss_pred             cCCEEEEeCCCcC-ccCCCC----------CCCCCEEEeCCCCCcccc-------cccccCCCceEeeeecccccccccc
Confidence            3567888888887 222111          368999999999997521       1345678899999999999998754


Q ss_pred             HHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCE
Q 013056          294 GRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEI  373 (450)
Q Consensus       294 ~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  373 (450)
                      +..+     ..+++|++|+|++|++....+           ..|.++++|++|+|++|+|+.    ..+.++..+++|++
T Consensus        71 ~~~~-----~~~~~L~~L~Ls~N~l~~l~~-----------~~F~~l~~L~~L~L~~N~l~~----i~~~~f~~l~~L~~  130 (192)
T d1w8aa_          71 PNAF-----EGASHIQELQLGENKIKEISN-----------KMFLGLHQLKTLNLYDNQISC----VMPGSFEHLNSLTS  130 (192)
T ss_dssp             TTTT-----TTCTTCCEEECCSCCCCEECS-----------SSSTTCTTCCEEECCSSCCCE----ECTTSSTTCTTCCE
T ss_pred             cccc-----ccccccceeeeccccccccCH-----------HHHhCCCcccccccCCccccc----cCHHHhcCCccccc
Confidence            4333     457999999999999997444           345578999999999999997    22445789999999


Q ss_pred             EecCCCCCCh-hhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 013056          374 LDISDNTIED-DGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC  446 (450)
Q Consensus       374 L~Ls~N~l~~-~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~  446 (450)
                      |+|++|.+.- -.+..+.          ..++.+.+..+.++..    .+..+..    ++.++|+.|++.-..
T Consensus       131 l~L~~N~~~~~~~~~~~~----------~~l~~~~l~~~~~~c~----~p~~l~~----~~l~~L~~n~l~C~~  186 (192)
T d1w8aa_         131 LNLASNPFNCNCHLAWFA----------EWLRKKSLNGGAARCG----APSKVRD----VQIKDLPHSEFKCSS  186 (192)
T ss_dssp             EECTTCCBCCSGGGHHHH----------HHHHHHCCSGGGCBBC----SSTTTTT----SBGGGSCTTTCCCCC
T ss_pred             ccccccccccccchHHHh----------hhhhhhcccCCCeEeC----CChhhcC----CEeeecCHhhCcCCC
Confidence            9999999853 2222222          1233445555655542    2223333    677888999886543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.9e-12  Score=108.91  Aligned_cols=131  Identities=15%  Similarity=0.063  Sum_probs=80.3

Q ss_pred             CCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccc
Q 013056          245 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK  324 (450)
Q Consensus       245 ~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~  324 (450)
                      .++++|+|++|+|+..         ...+..+++|++|+|++|.|+.- . .     +..+++|++|++++|.++...+ 
T Consensus        18 ~~lr~L~L~~n~I~~i---------~~~~~~l~~L~~L~Ls~N~i~~l-~-~-----~~~l~~L~~L~ls~N~i~~l~~-   80 (162)
T d1a9na_          18 VRDRELDLRGYKIPVI---------ENLGATLDQFDAIDFSDNEIRKL-D-G-----FPLLRRLKTLLVNNNRICRIGE-   80 (162)
T ss_dssp             TSCEEEECTTSCCCSC---------CCGGGGTTCCSEEECCSSCCCEE-C-C-----CCCCSSCCEEECCSSCCCEECS-
T ss_pred             CcCcEEECCCCCCCcc---------CccccccccCCEEECCCCCCCcc-C-C-----cccCcchhhhhcccccccCCCc-
Confidence            4566666666666652         22234567788888888877652 1 1     2446778888888887775222 


Q ss_pred             cCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHH--HHhhcCCCCCEEecCCCCCChhh-HHHHHHHHHhhcCCCC
Q 013056          325 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLG--SALVHIPNLEILDISDNTIEDDG-IRSLIPYFVQASERCN  401 (450)
Q Consensus       325 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~~l~~~~~L~~L~Ls~N~l~~~g-~~~l~~~l~~~l~~~~  401 (450)
                             ..+.   .+++|+.|++++|+|++     ++  ..+..+++|++|++++|.+++.. .+.      ..+..++
T Consensus        81 -------~~~~---~l~~L~~L~L~~N~i~~-----~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~------~~i~~lp  139 (162)
T d1a9na_          81 -------GLDQ---ALPDLTELILTNNSLVE-----LGDLDPLASLKSLTYLCILRNPVTNKKHYRL------YVIYKVP  139 (162)
T ss_dssp             -------CHHH---HCTTCCEEECCSCCCCC-----GGGGGGGGGCTTCCEEECCSSGGGGSTTHHH------HHHHHCT
T ss_pred             -------cccc---cccccccceeccccccc-----cccccccccccccchhhcCCCccccccchHH------HHHHHCC
Confidence                   1222   34778888888888775     33  24667788888888888776521 111      1244457


Q ss_pred             CcCEEEccCCCCCh
Q 013056          402 PLVELYLENCELSG  415 (450)
Q Consensus       402 ~L~~L~L~~n~l~~  415 (450)
                      +|++||  +..++.
T Consensus       140 ~L~~LD--~~~i~~  151 (162)
T d1a9na_         140 QVRVLD--FQKVKL  151 (162)
T ss_dssp             TCSEET--TEECCH
T ss_pred             CcCeeC--CCCCCH
Confidence            788776  444555

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.7e-14  Score=130.08  Aligned_cols=197  Identities=11%  Similarity=0.066  Sum_probs=127.5

Q ss_pred             ccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHH-HHHHHHHhccccCCCCee
Q 013056          170 QNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFV-EGICRSLCSKRKRIHKIE  248 (450)
Q Consensus       170 ~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~-~~l~~~L~~~~~~~~~L~  248 (450)
                      ++..++.+|..+.  +++++|++++|.+.......    +.++++|++|++++|.+..... ..+..        +..++
T Consensus        16 ~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~----f~~l~~L~~L~ls~n~~~~~i~~~~f~~--------l~~l~   81 (242)
T d1xwdc1          16 QESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGA----FSGFGDLEKIEISQNDVLEVIEADVFSN--------LPKLH   81 (242)
T ss_dssp             ESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTT----TTTCTTCCEEEEESCTTCCEECSSSEES--------CTTCC
T ss_pred             eCCCCCCcCCCCC--CCCCEEECcCCcCCccChhH----hhccchhhhhhhccccccceeecccccc--------ccccc
Confidence            3444445554443  57899999999865443322    5778899999999997764221 11111        57788


Q ss_pred             EEEcCC-CCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCc
Q 013056          249 NLSIDI-SSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDR  327 (450)
Q Consensus       249 ~L~L~~-n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~  327 (450)
                      ++.+.. +.+..        .....+.++++|++|++++|.+....+...    ...+..+..+..+++.+....+    
T Consensus        82 ~l~~~~~n~l~~--------~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~----~~~l~~l~~~~~~n~~l~~i~~----  145 (242)
T d1xwdc1          82 EIRIEKANNLLY--------INPEAFQNLPNLQYLLISNTGIKHLPDVHK----IHSLQKVLLDIQDNINIHTIER----  145 (242)
T ss_dssp             EEEEECCTTCCE--------ECTTSEECCTTCCEEEEESCCCCSCCCCTT----TCBSSCEEEEEESCTTCCEECT----
T ss_pred             cccccccccccc--------cccccccccccccccccchhhhcccccccc----cccccccccccccccccccccc----
Confidence            888754 56655        334556788999999999998865322111    1224555555666666664222    


Q ss_pred             ccHHHhhhCCCCC-CceeEEEccCCCCChhhHHHHHHHhhcCCCCCEE-ecCCCCCChhhHHHHHHHHHhhcCCCCCcCE
Q 013056          328 SGPLFSLGAGKSL-QSLRLLNLRGNNLCKADARDLGSALVHIPNLEIL-DISDNTIEDDGIRSLIPYFVQASERCNPLVE  405 (450)
Q Consensus       328 ~~l~~~l~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L-~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~  405 (450)
                             ..+..+ ..++.|++.+|+++.     ++......++++++ ++++|+++.      +|.  ..|.++++|++
T Consensus       146 -------~~~~~~~~~l~~L~l~~n~l~~-----i~~~~~~~~~l~~~~~l~~n~l~~------l~~--~~f~~l~~L~~  205 (242)
T d1xwdc1         146 -------NSFVGLSFESVILWLNKNGIQE-----IHNCAFNGTQLDELNLSDNNNLEE------LPN--DVFHGASGPVI  205 (242)
T ss_dssp             -------TSSTTSBSSCEEEECCSSCCCE-----ECTTTTTTCCEEEEECTTCTTCCC------CCT--TTTTTSCCCSE
T ss_pred             -------cccccccccceeeecccccccc-----cccccccchhhhcccccccccccc------ccH--HHhcCCCCCCE
Confidence                   222222 478899999999986     55555566776666 467788876      442  45788899999


Q ss_pred             EEccCCCCChh
Q 013056          406 LYLENCELSGR  416 (450)
Q Consensus       406 L~L~~n~l~~~  416 (450)
                      |+|++|+|+..
T Consensus       206 L~Ls~N~l~~l  216 (242)
T d1xwdc1         206 LDISRTRIHSL  216 (242)
T ss_dssp             EECTTSCCCCC
T ss_pred             EECCCCcCCcc
Confidence            99999998863

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.19  E-value=3.5e-12  Score=120.59  Aligned_cols=56  Identities=25%  Similarity=0.318  Sum_probs=44.6

Q ss_pred             CCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056          368 IPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR  444 (450)
Q Consensus       368 ~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~  444 (450)
                      +++|++|+|++|+|+.      +|   .   .+++|++|+|++|+|+.     +++    ...+|++|++++|+|+.
T Consensus       283 ~~~L~~L~Ls~N~l~~------lp---~---~~~~L~~L~L~~N~L~~-----l~~----~~~~L~~L~L~~N~L~~  338 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIE------LP---A---LPPRLERLIASFNHLAE-----VPE----LPQNLKQLHVEYNPLRE  338 (353)
T ss_dssp             CTTCCEEECCSSCCSC------CC---C---CCTTCCEEECCSSCCSC-----CCC----CCTTCCEEECCSSCCSS
T ss_pred             CCCCCEEECCCCccCc------cc---c---ccCCCCEEECCCCcCCc-----ccc----ccCCCCEEECcCCcCCC
Confidence            4689999999999986      54   2   34789999999999987     432    24459999999999975

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.09  E-value=3.8e-12  Score=110.70  Aligned_cols=115  Identities=21%  Similarity=0.199  Sum_probs=75.2

Q ss_pred             HHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEc
Q 013056          269 LVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNL  348 (450)
Q Consensus       269 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L  348 (450)
                      +...+..+++|++|+|++|.|+.. . .+.     .+++|++|+|++|.++...         ....   .+++|+.|++
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~-----~l~~L~~L~Ls~N~i~~i~---------~~~~---~~~~L~~L~l  100 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEKI-S-SLS-----GMENLRILSLGRNLIKKIE---------NLDA---VADTLEELWI  100 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESCC-C-CHH-----HHTTCCEEECCEEEECSCS---------SHHH---HHHHCCEEEC
T ss_pred             hhhHHhcccccceeECcccCCCCc-c-ccc-----CCccccChhhccccccccc---------cccc---cccccccccc
Confidence            344566677888888888877652 1 221     2577888888888776421         1111   1246788888


Q ss_pred             cCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056          349 RGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG  415 (450)
Q Consensus       349 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~  415 (450)
                      ++|.|+.     ++ .+..+++|++|++++|+|++      ++.+ ..+..+++|++|++++|+++.
T Consensus       101 ~~N~i~~-----l~-~~~~l~~L~~L~L~~N~i~~------~~~~-~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         101 SYNQIAS-----LS-GIEKLVNLRVLYMSNNKITN------WGEI-DKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             SEEECCC-----HH-HHHHHHHSSEEEESEEECCC------HHHH-HHHTTTTTCSEEEECSSHHHH
T ss_pred             ccccccc-----cc-cccccccccccccccchhcc------cccc-ccccCCCccceeecCCCcccc
Confidence            8888875     43 36667788888888888876      3221 345667888888888887644

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=4e-12  Score=114.20  Aligned_cols=201  Identities=18%  Similarity=0.022  Sum_probs=134.5

Q ss_pred             chhhcccccCcchhhhHhh-hcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccC-CCCChhHHHHHHHHHhcc
Q 013056          163 YARCLRLQNALCVEETCQL-LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLH-CKLSPSFVEGICRSLCSK  240 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l-~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~~  240 (450)
                      .++.++++++.+..++... .++++|++|++++|.+...++.   ..+.+++.++++.+.. |.+.......+..     
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~---~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~-----  101 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA---DVFSNLPKLHEIRIEKANNLLYINPEAFQN-----  101 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECS---SSEESCTTCCEEEEECCTTCCEECTTSEEC-----
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeec---cccccccccccccccccccccccccccccc-----
Confidence            5677889999888877754 5889999999999985433221   1146788999998875 4666544333222     


Q ss_pred             ccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCC
Q 013056          241 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  320 (450)
Q Consensus       241 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~  320 (450)
                         +.+|+++++++|.+......       ..+..++.+..+...++.+.......+    ......++.|++++|.++.
T Consensus       102 ---l~~L~~l~l~~~~l~~~~~~-------~~~~~l~~l~~~~~~n~~l~~i~~~~~----~~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1         102 ---LPNLQYLLISNTGIKHLPDV-------HKIHSLQKVLLDIQDNINIHTIERNSF----VGLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             ---CTTCCEEEEESCCCCSCCCC-------TTTCBSSCEEEEEESCTTCCEECTTSS----TTSBSSCEEEECCSSCCCE
T ss_pred             ---cccccccccchhhhcccccc-------ccccccccccccccccccccccccccc----ccccccceeeecccccccc
Confidence               68999999999998763321       233445666666777777765322222    1113478999999999885


Q ss_pred             cccccCcccHHHhhhCCCCCCceeEE-EccCCCCChhhHHHHHH-HhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcC
Q 013056          321 WLSKYDRSGPLFSLGAGKSLQSLRLL-NLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASE  398 (450)
Q Consensus       321 ~~~~~~~~~l~~~l~~~~~l~~L~~L-~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~  398 (450)
                      ..+           ..+ ...+++.+ .+.+|+|+.     ++. .+.++++|++|+|++|+|+.      +|.  ..+.
T Consensus       168 i~~-----------~~~-~~~~l~~~~~l~~n~l~~-----l~~~~f~~l~~L~~L~Ls~N~l~~------l~~--~~~~  222 (242)
T d1xwdc1         168 IHN-----------CAF-NGTQLDELNLSDNNNLEE-----LPNDVFHGASGPVILDISRTRIHS------LPS--YGLE  222 (242)
T ss_dssp             ECT-----------TTT-TTCCEEEEECTTCTTCCC-----CCTTTTTTSCCCSEEECTTSCCCC------CCS--SSCT
T ss_pred             ccc-----------ccc-cchhhhcccccccccccc-----ccHHHhcCCCCCCEEECCCCcCCc------cCH--HHHc
Confidence            322           112 23555555 578888986     554 47889999999999999986      442  4566


Q ss_pred             CCCCcCEEEccC
Q 013056          399 RCNPLVELYLEN  410 (450)
Q Consensus       399 ~~~~L~~L~L~~  410 (450)
                      .+++|+.+++.+
T Consensus       223 ~l~~L~~l~~~~  234 (242)
T d1xwdc1         223 NLKKLRARSTYN  234 (242)
T ss_dssp             TCCEEESSSEES
T ss_pred             CCcccccCcCCC
Confidence            666666666544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.97  E-value=4.9e-12  Score=109.99  Aligned_cols=132  Identities=26%  Similarity=0.275  Sum_probs=95.0

Q ss_pred             CCCCEEecCCC--CCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCC
Q 013056          277 RSLCSLKLRHC--HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLC  354 (450)
Q Consensus       277 ~~L~~L~Ls~n--~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~  354 (450)
                      ..++.+++++.  .+.. .+..+.     .+++|++|+|++|.|+..          ..+.   .+++|+.|+|++|.|+
T Consensus        23 ~~~~~~~l~~~~~~i~~-l~~sl~-----~L~~L~~L~Ls~n~I~~i----------~~l~---~l~~L~~L~Ls~N~i~   83 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEK-MDATLS-----TLKACKHLALSTNNIEKI----------SSLS---GMENLRILSLGRNLIK   83 (198)
T ss_dssp             TTCSCEECCBCCTTCCC-CHHHHH-----HTTTCCEEECSEEEESCC----------CCHH---HHTTCCEEECCEEEEC
T ss_pred             cccceeeeecccCchhh-hhhHHh-----cccccceeECcccCCCCc----------cccc---CCccccChhhcccccc
Confidence            34667777664  3433 334442     379999999999998852          1233   5689999999999998


Q ss_pred             hhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcE
Q 013056          355 KADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTS  434 (450)
Q Consensus       355 ~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~  434 (450)
                      +     ++.....+++|++|++++|+|++      ++.    +..+++|++|++++|.|+..+.   ...+..++. |+.
T Consensus        84 ~-----i~~~~~~~~~L~~L~l~~N~i~~------l~~----~~~l~~L~~L~L~~N~i~~~~~---~~~l~~l~~-L~~  144 (198)
T d1m9la_          84 K-----IENLDAVADTLEELWISYNQIAS------LSG----IEKLVNLRVLYMSNNKITNWGE---IDKLAALDK-LED  144 (198)
T ss_dssp             S-----CSSHHHHHHHCCEEECSEEECCC------HHH----HHHHHHSSEEEESEEECCCHHH---HHHHTTTTT-CSE
T ss_pred             c-----ccccccccccccccccccccccc------ccc----ccccccccccccccchhccccc---cccccCCCc-cce
Confidence            6     44334445689999999999997      432    3445899999999999998421   245666544 999


Q ss_pred             EECcCCCCCccc
Q 013056          435 LSIADNNLGRFC  446 (450)
Q Consensus       435 L~L~~N~l~~~~  446 (450)
                      |++++|++....
T Consensus       145 L~L~~N~l~~~~  156 (198)
T d1m9la_         145 LLLAGNPLYNDY  156 (198)
T ss_dssp             EEECSSHHHHHH
T ss_pred             eecCCCccccCc
Confidence            999999886543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.91  E-value=5.8e-10  Score=104.92  Aligned_cols=217  Identities=19%  Similarity=0.109  Sum_probs=132.0

Q ss_pred             chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056          163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK  242 (450)
Q Consensus       163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~  242 (450)
                      .++.|+++++.++++|..   .++|++|++++|.+....        ....+|+.|++++|.++..         ...  
T Consensus        39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp--------~~~~~L~~L~l~~n~l~~l---------~~l--   96 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELP--------ELPQSLKSLLVDNNNLKAL---------SDL--   96 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCC--------CCCTTCCEEECCSSCCSCC---------CSC--
T ss_pred             CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccc--------cchhhhhhhhhhhcccchh---------hhh--
Confidence            344556666666655532   367888888888865432        1245788888888877632         111  


Q ss_pred             CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056          243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  322 (450)
Q Consensus       243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  322 (450)
                       ...|++|++++|.+...         + .++.+++|++|++++|.+.....         ....+..+.+..+..... 
T Consensus        97 -p~~L~~L~L~~n~l~~l---------p-~~~~l~~L~~L~l~~~~~~~~~~---------~~~~l~~l~~~~~~~~~~-  155 (353)
T d1jl5a_          97 -PPLLEYLGVSNNQLEKL---------P-ELQNSSFLKIIDVDNNSLKKLPD---------LPPSLEFIAAGNNQLEEL-  155 (353)
T ss_dssp             -CTTCCEEECCSSCCSSC---------C-CCTTCTTCCEEECCSSCCSCCCC---------CCTTCCEEECCSSCCSSC-
T ss_pred             -ccccccccccccccccc---------c-chhhhccceeecccccccccccc---------ccccccchhhcccccccc-
Confidence             24688888888887762         2 23567888888888887765211         136677777777665431 


Q ss_pred             cccCcccHHHhhhCCCCCCceeEEEccCCCCChhhH---------------HHHHHHhhcCCCCCEEecCCCCCChhhH-
Q 013056          323 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADA---------------RDLGSALVHIPNLEILDISDNTIEDDGI-  386 (450)
Q Consensus       323 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~---------------~~l~~~l~~~~~L~~L~Ls~N~l~~~g~-  386 (450)
                                  ..+..++.++.|.+..|.+.....               ..+ ..+..++.|+.+++++|....... 
T Consensus       156 ------------~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~  222 (353)
T d1jl5a_         156 ------------PELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEEL-PELQNLPFLTTIYADNNLLKTLPDL  222 (353)
T ss_dssp             ------------CCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSC-CCCTTCTTCCEEECCSSCCSSCCSC
T ss_pred             ------------ccccccccceeccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccc
Confidence                        223356888999999887654110               001 123456778888877765432100 


Q ss_pred             -----------------HHHHHHH------------------------------HhhcCCCCCcCEEEccCCCCChhHHH
Q 013056          387 -----------------RSLIPYF------------------------------VQASERCNPLVELYLENCELSGRGVS  419 (450)
Q Consensus       387 -----------------~~l~~~l------------------------------~~~l~~~~~L~~L~L~~n~l~~~g~~  419 (450)
                                       ....+.+                              ......+++|++|+|++|+|+.    
T Consensus       223 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~----  298 (353)
T d1jl5a_         223 PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE----  298 (353)
T ss_dssp             CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC----
T ss_pred             cccccccccccccccccccccccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCCccCc----
Confidence                             0000000                              0011224689999999999987    


Q ss_pred             HHHHHHhcCCCCCcEEECcCCCCCc
Q 013056          420 QLLDTLSTLRRPPTSLSIADNNLGR  444 (450)
Q Consensus       420 ~l~~~l~~l~~~L~~L~L~~N~l~~  444 (450)
                       ++..+    .+|+.|+|++|+|++
T Consensus       299 -lp~~~----~~L~~L~L~~N~L~~  318 (353)
T d1jl5a_         299 -LPALP----PRLERLIASFNHLAE  318 (353)
T ss_dssp             -CCCCC----TTCCEEECCSSCCSC
T ss_pred             -ccccc----CCCCEEECCCCcCCc
Confidence             44322    349999999999985

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.4e-09  Score=90.24  Aligned_cols=108  Identities=19%  Similarity=0.182  Sum_probs=73.9

Q ss_pred             CCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCC-CCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCC
Q 013056          276 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS-IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLC  354 (450)
Q Consensus       276 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~  354 (450)
                      +.....++.+++.+. ..+..+     ..+++|++|++++|+ ++...+           ..|.++++|+.|+|++|+|+
T Consensus         7 c~~~~~l~c~~~~~~-~~p~~l-----~~l~~l~~L~l~~n~~l~~i~~-----------~~f~~l~~L~~L~Ls~N~l~   69 (156)
T d2ifga3           7 PHGSSGLRCTRDGAL-DSLHHL-----PGAENLTELYIENQQHLQHLEL-----------RDLRGLGELRNLTIVKSGLR   69 (156)
T ss_dssp             CSSSSCEECCSSCCC-TTTTTS-----CSCSCCSEEECCSCSSCCEECG-----------GGSCSCCCCSEEECCSSCCC
T ss_pred             cCCCCeEEecCCCCc-cCcccc-----cCccccCeeecCCCccccccCc-----------hhhccccccCcceeeccccC
Confidence            445667777776552 444333     345788888887664 665322           33446788888899888888


Q ss_pred             hhhHHHH-HHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCC
Q 013056          355 KADARDL-GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELS  414 (450)
Q Consensus       355 ~~~~~~l-~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~  414 (450)
                      .     + +.++..+++|++|+|++|+|+.      +|.  ..+. ..+|++|+|++|.+.
T Consensus        70 ~-----i~~~~f~~l~~L~~L~Ls~N~l~~------l~~--~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          70 F-----VAPDAFHFTPRLSRLNLSFNALES------LSW--KTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             E-----ECTTGGGSCSCCCEEECCSSCCSC------CCS--TTTC-SCCCCEEECCSSCCC
T ss_pred             C-----cccccccccccccceeccCCCCcc------cCh--hhhc-cccccccccCCCccc
Confidence            6     4 4567888888999999888876      441  3343 347888889888875

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=3.3e-09  Score=87.95  Aligned_cols=109  Identities=21%  Similarity=0.134  Sum_probs=81.5

Q ss_pred             CCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCC-CCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056          244 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL  322 (450)
Q Consensus       244 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  322 (450)
                      +...+.++.+++.+++         .+..+..+++|++|++++| .++...+..     +..+++|+.|+|++|.|+...
T Consensus         7 c~~~~~l~c~~~~~~~---------~p~~l~~l~~l~~L~l~~n~~l~~i~~~~-----f~~l~~L~~L~Ls~N~l~~i~   72 (156)
T d2ifga3           7 PHGSSGLRCTRDGALD---------SLHHLPGAENLTELYIENQQHLQHLELRD-----LRGLGELRNLTIVKSGLRFVA   72 (156)
T ss_dssp             CSSSSCEECCSSCCCT---------TTTTSCSCSCCSEEECCSCSSCCEECGGG-----SCSCCCCSEEECCSSCCCEEC
T ss_pred             cCCCCeEEecCCCCcc---------CcccccCccccCeeecCCCccccccCchh-----hccccccCcceeeccccCCcc
Confidence            3445667777777665         3455667889999999766 477643333     355789999999999998744


Q ss_pred             cccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCC
Q 013056          323 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIE  382 (450)
Q Consensus       323 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~  382 (450)
                      +        .++.   .+++|++|+|++|+|+.     ++..+....+|++|+|++|.+.
T Consensus        73 ~--------~~f~---~l~~L~~L~Ls~N~l~~-----l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          73 P--------DAFH---FTPRLSRLNLSFNALES-----LSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             T--------TGGG---SCSCCCEEECCSSCCSC-----CCSTTTCSCCCCEEECCSSCCC
T ss_pred             c--------cccc---ccccccceeccCCCCcc-----cChhhhccccccccccCCCccc
Confidence            4        3444   66899999999999986     6766666678999999999985

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=3.3e-07  Score=75.96  Aligned_cols=67  Identities=27%  Similarity=0.272  Sum_probs=32.7

Q ss_pred             hCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCC
Q 013056          303 EASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIE  382 (450)
Q Consensus       303 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~  382 (450)
                      ..++.|++|+|++|+|++..+      ++..+.   .+++|+.|+|++|.|++-.  .+  .......|++|++++|.++
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~------~~~~~~---~l~~L~~L~Ls~N~i~~l~--~l--~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDD------MSSIVQ---KAPNLKILNLSGNELKSER--EL--DKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSG------GGTHHH---HSTTCCCCCCTTSCCCCGG--GH--HHHTTCCCSSCCCTTSTTS
T ss_pred             HhCCCCCEeeCCCccccCCch------hHHHHh---hCCcccccccccCccccch--hh--hhhhccccceeecCCCCcC
Confidence            346677777777777664211      122222   3355555566666555411  01  1112334555555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=2.4e-08  Score=83.08  Aligned_cols=92  Identities=26%  Similarity=0.359  Sum_probs=62.2

Q ss_pred             CCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChh--
Q 013056          339 SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR--  416 (450)
Q Consensus       339 ~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~--  416 (450)
                      .++.|++|+|++|+|++-.  .++..+..+++|+.|+|++|.|++      ++.+ ..+. ..+|+.|++++|+++..  
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~--~~~~~~~~l~~L~~L~Ls~N~i~~------l~~l-~~l~-~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLD--DMSSIVQKAPNLKILNLSGNELKS------EREL-DKIK-GLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCS--GGGTHHHHSTTCCCCCCTTSCCCC------GGGH-HHHT-TCCCSSCCCTTSTTSSSSS
T ss_pred             hCCCCCEeeCCCccccCCc--hhHHHHhhCCcccccccccCcccc------chhh-hhhh-ccccceeecCCCCcCcCcc
Confidence            4688999999999998622  244557788999999999999987      3221 1123 35799999999998742  


Q ss_pred             -HHHHHHHHHhcCCCCCcEEECcCCCCC
Q 013056          417 -GVSQLLDTLSTLRRPPTSLSIADNNLG  443 (450)
Q Consensus       417 -g~~~l~~~l~~l~~~L~~L~L~~N~l~  443 (450)
                       ........+..+++ |+.||  |+.+.
T Consensus       133 ~~~~y~~~i~~~~P~-L~~LD--g~~v~  157 (162)
T d1koha1         133 DQSTYISAIRERFPK-LLRLD--GHELP  157 (162)
T ss_dssp             SHHHHHHHHHTTSTT-CCEET--TEECC
T ss_pred             cchhHHHHHHHHCCC-CCEEC--cCCCc
Confidence             12223344555444 88886  55553

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00061  Score=50.72  Aligned_cols=70  Identities=20%  Similarity=0.281  Sum_probs=44.3

Q ss_pred             hhccCchHHHHHHHhcCChhhhhhhhhcCCCCCCCCCcccccccccccccCCchHHHHHHHhcccCCCCCC---------
Q 013056           19 YVYELPADLFDILLTCLPPLALQKLQTKMDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQ---------   89 (450)
Q Consensus        19 ~~~~lp~~ll~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~r~~~~~~~W~~l~~~~w~~~~~~---------   89 (450)
                      ++..||.|++..||++|||.++.++.         .+      +++--.-......|+++|...|......         
T Consensus        18 ~i~~LP~Eil~~Ils~Ld~~dL~~~~---------~v------cr~w~~l~~~~~lW~~~~~r~~~~~~~~~~~~~~~~~   82 (102)
T d2ovrb1          18 FISLLPKELALYVLSFLEPKDLLQAA---------QT------CRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKP   82 (102)
T ss_dssp             TTTSSCHHHHHHHHTTSCHHHHHHHT---------TS------CHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSS
T ss_pred             ChhhCCHHHHHHHHHcCCHHHHHHHH---------HH------HHHHHHHHCCHHHHHHHHHHcCCCCchHHHhhhcccC
Confidence            46679999999999999999996665         11      1111111344667999987665432111         


Q ss_pred             -CCCcchHHHHHHHH
Q 013056           90 -IEPVDWQQRYWEAH  103 (450)
Q Consensus        90 -~~~~~~~~~~~e~~  103 (450)
                       ....+|++.|.+.|
T Consensus        83 ~~~~~~WK~~Y~~~~   97 (102)
T d2ovrb1          83 GFIHSPWKSAYIRQH   97 (102)
T ss_dssp             CCCCCHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHH
Confidence             11456998886443

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00044  Score=41.93  Aligned_cols=35  Identities=23%  Similarity=0.363  Sum_probs=29.4

Q ss_pred             ccCchHHHHHHHhcCChhhhhhhhhcCCCCCCCCCcccccccccccccCCchHHHHHHHh
Q 013056           21 YELPADLFDILLTCLPPLALQKLQTKMDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFK   80 (450)
Q Consensus        21 ~~lp~~ll~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~r~~~~~~~W~~l~~   80 (450)
                      ..||.|++..||++||+.++                         .|+...++.|++++.
T Consensus         2 ~~LP~eil~~If~~L~~~dl-------------------------~~~~~Vcr~w~~l~~   36 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPEL-------------------------LKVSGVCKRWYRLAS   36 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGH-------------------------HHHHTTCHHHHHHHT
T ss_pred             CcCCHHHHHHHHHcCCHHHH-------------------------HHHHHHHHHHHHHhC
Confidence            36999999999999998877                         566678889988774

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.00  E-value=0.0058  Score=44.94  Aligned_cols=36  Identities=14%  Similarity=0.210  Sum_probs=29.8

Q ss_pred             hhccCchHHHHHHHhcCChhhhhhhhhcCCCCCCCCCcccccccccccccCCchHHHHHHH
Q 013056           19 YVYELPADLFDILLTCLPPLALQKLQTKMDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLF   79 (450)
Q Consensus        19 ~~~~lp~~ll~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~r~~~~~~~W~~l~   79 (450)
                      .+..||.|++..||++||+..|                         +|+..++..|.+++
T Consensus         5 ~~~~LP~Ell~~I~s~Ld~~dL-------------------------~~~s~Vcr~W~~~~   40 (100)
T d1nexb1           5 LITSLPFEISLKIFNYLQFEDI-------------------------INSLGVSQNWNKII   40 (100)
T ss_dssp             HHHHSCHHHHHHHHTTSCHHHH-------------------------HHHTTTCHHHHHHH
T ss_pred             chhhCCHHHHHHHHHCCCHHHH-------------------------HHHHHHHHHHHHHH
Confidence            4678999999999999998888                         56677788887665

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.52  E-value=0.05  Score=40.90  Aligned_cols=37  Identities=19%  Similarity=0.343  Sum_probs=29.3

Q ss_pred             hhccCch----HHHHHHHhcCChhhhhhhhhcCCCCCCCCCcccccccccccccCCchHHHHHHHh
Q 013056           19 YVYELPA----DLFDILLTCLPPLALQKLQTKMDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFK   80 (450)
Q Consensus        19 ~~~~lp~----~ll~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~r~~~~~~~W~~l~~   80 (450)
                      ++..||.    |+...||++|++.+|                         +++..+++.|+++..
T Consensus        10 ~i~~LP~~l~~EI~~~Ils~Ld~~dL-------------------------~~~s~Vck~W~~l~~   50 (118)
T d1p22a1          10 FITALPARGLDHIAENILSYLDAKSL-------------------------CAAELVCKEWYRVTS   50 (118)
T ss_dssp             HHHHTGGGTCHHHHHHHHTTCCHHHH-------------------------HHHHHHCHHHHHHHH
T ss_pred             HHHHCCCCChHHHHHHHHHcCCHHHH-------------------------HHHHHHHHHHHHHHc
Confidence            5666775    999999999999888                         455567778877775