Citrus Sinensis ID: 013059

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450
Protein Sequence
MGFFRRLFGAKKAGTHSSSKEKRRWSFTSRSSSKQTTPSQSQSQPQSLPQATKPDASYEANLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSTGGRGAGVAAPPGAHVRWQHELAAVRIQCAFRGYLARRALKALKALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRTPTSESLLSSSKSSLSRSTRCGSSSNFGDITDLDKGRLGSNWLDRWMEESVWNGHRVSQLKSGPPADDEKSDKILEVDTWKPHLNPRQHNRVIRSSPHGSALDYNNHSYMTIDSPSKLSVKNMNPIPSVSPGEVLSLSSLKVPVGKSDAALRTADNSPQVSSASYRPGSSARRGPFTPTRSEYSWGYFSGCIGHPNYMANTESSRAKVRSLSAPRQRLELERYGSTKRSAHGFWDGSINSERDFAQHADFRNRASPTSDRLSKFGSINLR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccccccccccccEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcHHHHEcccccccccccccccccHHcHcccccccccccccccccHccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mgffrrlfgakkagthssskekrrwsftsrssskqttpsqsqsqpqslpqatkpdasyeanLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLtstggrgagvaappgahvrWQHELAAVRIQCAFRGYLARRALKALKALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVrasrtptsesllsssksslsrstrcgsssnfgditdldkgrlgsnwLDRWMEESvwnghrvsqlksgppaddeksdkilevdtwkphlnprqhnrvirssphgsaldynnhsymtidspsklsvknmnpipsvspgevlslsslkvpvgksdaalrtadnspqvssasyrpgssarrgpftptrseyswgyfsgcighpnymantesSRAKVrslsaprqrlelerygstkrsahgfwdgsinserdfaqhadfrnrasptsdrlskfgsinlr
Flexible Loop (DISEMBL)
mgffrrlfgakkagthssskekrrwsftsrssskqttpsqsqsqpqslPQATKPDASYEANLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSTGGRGAGVAAPPGAHVRWQHELAAVRIQCAFRGYLARRALKALKALVKLQALVRGHIVRKQTADMLKRMQTLVKVQarvrasrtptsesllsssksslsrstrcgsssnfgditdldkgrLGSNWLDRWMEESVWNGhrvsqlksgppaddeksdKILEvdtwkphlnprqhnrvirsspHGSALDYNNHSYMTIDSPSKLSVKNMNPIPSVSPGEVLSLSSLKVPVGKSDAalrtadnspqvssasyrpgssarrgpfTPTRSEYSWGYFSGCIGHPNYMANTESSRAKvrslsaprqrlelerygstkrsahgfwdgsINSERDFAQHAdfrnrasptsdrlskfgsinlr
Low Complexity Region (SEG)
MGFFRRLFGAKKAGTHSSSKEKRRWSFtsrssskqttpsqsqsqpqslpqATKPDASYEANLDANKHaiavaaataavaeaalaaahaaaevvRLTSTggrgagvaappgahvrWQHELAAVRIQCAFRGYlarralkalkalvklqalvrGHIVRKQTADMLKRMQTLVKVQARVRAsrtptsesllsssksslsrstrcgsssNFGDITDLDKGRLGSNWLDRWMEESVWNGHRVSQLKSGPPADDEKSDKILEVDTWKPHLNPRQHNRVIRSSPHGSALDYNNHSYMTIDSPSKLSVKNMNPIPSVSPGEVLSLSSLKVPVGKSDAALRTADNSPQVSSASYRPGSSARRGPFTPTRSEYSWGYFSGCIGHPNYMANTESSRAKVRSLSAPRQRLELERYGSTKRSAHGFWDGSINSERDFAQHADFRNRASPTSDRLSKFGSINLR
Disordered region (IsUnstruct)
****************************************************************NKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSTGGRGAGVAAPPGAHVRWQHELAAVRIQCAFRGYLARRALKALKALVKLQALVRGHIVRKQTADMLKRMQTLVKV*************************************ITDLDKGRLGSNWLDRWMEESVWNGH******************************************************************************************************************************EYSWGYFSGCIGHPNYM************************************************************************
Disordered Region (DISOPRED)
MGFFRRL****************************************************************AAATAAVAEAALAAAHAAAE***********************WQHELAAVRIQCAFRGYLARRALKALKALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRA*************************************************************************************************************************************************************************************************************************************************************************FG*****
Disordered Region (DISEMBL)
MGFFRRLFG**********************************************ASYEANLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSTGGRGAGVAAPPGAHVRWQHELAAVRIQCAFRGYLARRALKALKALVKLQALVRGHIVRKQTADMLKRMQTLVKVQA*****************************SSNFGDITDLDKGRLGSNWLDRWMEESVWN*****************SDKILEVDTWKPHLNPRQHNRVIRSSPHGSALDYNNHSYMTIDSPSKLSVKNMNPIPSVSPGEVLSLSSLKVPVGKSDAALRT***********************TPTRSEYSWGYFSGCIGHPNYMANT**********SAPRQRLELERYGSTKRSAHGFWDGSINSERDFAQHADFR**********SKFGSINLR
Disordered Region (DISPRO)
*GFFRRLFGAK*******************************************************HAIAVAAATAAVAEAAL***H***********************AHVRWQHELAAVRIQCAFRGYLARRALKALKALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRTPTSESLL******************************GSNWLDRWMEESVWNGHRVSQLKSGPPADDEKSDKILEVDTWK*********************************************************************************************************************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGFFRRLFGAKKAGTHSSSKEKRRWSFTSRSSSKQTTPSQSQSQPQSLPQATKPDASYEANLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSTGGRGAGVAAPPGAHVRWQHELAAVRIQCAFRGYLARRALKALKALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRTPTSESLLSSSKSSLSRSTRCGSSSNFGDITDLDKGRLGSNWLDRWMEESVWNGHRVSQLKSGPPADDEKSDKILEVDTWKPHLNPRQHNRVIRSSPHGSALDYNNHSYMTIDSPSKLSVKNMNPIPSVSPGEVLSLSSLKVPVGKSDAALRTADNSPQVSSASYRPGSSARRGPFTPTRSEYSWGYFSGCIGHPNYMANTESSRAKVRSLSAPRQRLELERYGSTKRSAHGFWDGSINSERDFAQHADFRNRASPTSDRLSKFGSINLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	450	2.2.26 [Sep-21-2011]
Q8L4D8	587	Protein IQ-DOMAIN 31 OS=A	no	no	0.142	0.109	0.531	2e-12
Q8LPG9	668	Protein IQ-DOMAIN 14 OS=A	no	no	0.142	0.095	0.492	2e-12
Q9FXI5	794	Protein IQ-DOMAIN 32 OS=A	no	no	0.135	0.076	0.540	6e-10
Q9SF32	454	Protein IQ-DOMAIN 1 OS=Ar	no	no	0.231	0.229	0.345	2e-09

>sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 46/64 (71%)

Query: 114 RWQHELAAVRIQCAFRGYLARRALKALKALVKLQALVRGHIVRKQTADMLKRMQTLVKVQ 173
           R Q E+AA  +Q AFRGYLARRA  ALK +++LQAL+RGH+VR+Q    L  +  +V++Q
Sbjct: 109 RIQREIAATSVQAAFRGYLARRAFWALKGIIRLQALIRGHLVRRQAVATLFSVMGIVRLQ 168

Query: 174 ARVR 177
           A  R
Sbjct: 169 AFAR 172

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 52/65 (80%), Gaps = 1/65 (1%)

Query: 116 QHELAAVRIQCAFRGYLARRALKALKALVKLQALVRGHIVRKQTADMLKRMQTLVKVQAR 175
           QH  +A +IQ AFRGY+AR++ +ALK LV+LQ +VRG+ V++QT + +K MQ +V+VQ++
Sbjct: 321 QH-ASATKIQGAFRGYMARKSFRALKGLVRLQGVVRGYSVKRQTINAMKYMQQVVRVQSQ 379

Query: 176 VRASR 180
           +++ R
Sbjct: 380 IQSRR 384

May be involved in cooperative interactions with calmodulins or calmodulin-like proteins. May associate with nucleic acids and regulate gene expression at the transcriptional or post-transcriptional level.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FXI5|IQD32_ARATH Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana GN=IQD32 PE=1 SV=3

 Score = 65.9 bits (159), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 41/61 (67%)

Query: 118 ELAAVRIQCAFRGYLARRALKALKALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVR 177
           E   V IQ A RG+LARR L   K ++KLQA VRGH+VR Q    L+ +Q +VK+QA VR
Sbjct: 215 ESVIVVIQAAVRGFLARRELLRSKKVIKLQAAVRGHLVRSQAMGSLRCVQAIVKMQAMVR 274

Query: 178 A 178
           A
Sbjct: 275 A 275

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SF32|IQD1_ARATH Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 9/113 (7%)

Query: 73  AATAAVAEAALAAAHAAAEVVRLTSTGGRGAGVAAPPGAHVRWQHELAAVRIQCAFRGYL 132
           + TA VA   + +  ++ E V       R AG +         + E AA+ IQ  FRG+L
Sbjct: 72  SVTATVAHVLVDSPPSSPESVHQAIVVNRFAGKS---------KEEAAAILIQSTFRGHL 122

Query: 133 ARRALKALKALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRTPTSE 185
           ARR  + ++   +L+ L+ G +V++Q A  LK MQTL +VQ+++R+ R   SE
Sbjct: 123 ARRESQVMRGQERLKLLMEGSVVQRQAAITLKCMQTLSRVQSQIRSRRIRMSE 175

Modulates expression of glucosinolate pathway genes. May associate with nucleic acids and regulate gene expression at the transcriptional or post-transcriptional level.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	450
255539521	473	conserved hypothetical protein [Ricinus	0.975	0.928	0.590	1e-118
224136968	451	predicted protein [Populus trichocarpa]	0.935	0.933	0.577	1e-116
449485626	470	PREDICTED: uncharacterized LOC101216161	0.966	0.925	0.542	1e-107
356561701	477	PREDICTED: uncharacterized protein LOC10	0.968	0.914	0.537	1e-103
356529263	482	PREDICTED: uncharacterized protein LOC10	0.971	0.906	0.527	6e-97
356575931	456	PREDICTED: uncharacterized protein LOC10	0.946	0.934	0.535	2e-91
357444045	441	hypothetical protein MTR_1g101330 [Medic	0.897	0.916	0.519	2e-87
225426832	494	PREDICTED: uncharacterized protein LOC10	0.94	0.856	0.462	8e-69
147777534	530	hypothetical protein VITISV_040960 [Viti	0.957	0.813	0.431	6e-64
224058589	477	predicted protein [Populus trichocarpa]	0.948	0.895	0.452	5e-60

>gi|255539521|ref|XP_002510825.1| conserved hypothetical protein [Ricinus communis] gi|223549940|gb|EEF51427.1| conserved hypothetical protein [Ricinus communis]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 286/484 (59%), Positives = 337/484 (69%), Gaps = 45/484 (9%)

Query: 1   MGFFRRLFGAKKAGTHSS--SKEKRRWSFTSRSSSKQTTPSQSQSQPQSLPQATKPDASY 58
           MG FRRLFG KKAG+ SS  +K+K+RWSF +RSS+  T PS S  +  SL         +
Sbjct: 1   MGLFRRLFGPKKAGSGSSPTAKDKKRWSF-ARSSN--TIPSLSNKRDISL------SGPF 51

Query: 59  EANLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSTGGRGAGVAAPPG----AHVR 114
           + +LDANKHAIAVAAATAAVAEAALAAA AAAEVVRLTS GGR    +   G    +H R
Sbjct: 52  DDSLDANKHAIAVAAATAAVAEAALAAAQAAAEVVRLTSGGGRSTTTSNVSGHVSGSHRR 111

Query: 115 WQHELAAVRIQCAFRGYLARRALKALKALVKLQALVRGHIVRKQTADMLKRMQTLVKVQA 174
           WQ E+AAV+IQ AFRGYLARRAL+ALKALVKLQALVRGHIVRKQTADML+RMQTLV+VQA
Sbjct: 112 WQVEVAAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQTADMLRRMQTLVRVQA 171

Query: 175 RVRASRTPTSESLLSSSKSSLSRST-------------------------RCGSSSNFGD 209
           R RASR+  SES  ++ KSSL  +T                         RCGS+SNF D
Sbjct: 172 RARASRSHVSESFHTTRKSSLPHNTVPASPHKDYHLQGYNTKFDGPSILKRCGSNSNFRD 231

Query: 210 IT--DLDKGRLGSNWLDRWMEESVWNGHRVSQLKSGPPADDEKSDKILEVDTWKPHLNPR 267
           I    LD+ +LG+NWL+ WMEES +N H    ++    ADDE+SDKILEVDTWKPH+   
Sbjct: 232 INVMHLDEAKLGANWLEHWMEESFYNNHGSIPMRK-QHADDERSDKILEVDTWKPHMKS- 289

Query: 268 QHNRVIRSSPHGSALDYNNHSYMTIDSPSKLSVKNMNPIPSVSPGEVLSLSSLKVPVGKS 327
           Q     + S    A +Y N S  T DSPSK S K +N +P+V  GEVLSL+SLK P+GK 
Sbjct: 290 QSVGTFQMSQDVLASEYKNQSLTTFDSPSKSSTKAINQMPTVPSGEVLSLNSLKFPLGKD 349

Query: 328 DAALRTADNSPQVSSASYRPGSSARRGPFTPTRSEYSWGYFSGCIGHPNYMANTESSRAK 387
           +A LRT +NSP V S S RPGSS RRG FTPTRSE SWG+F+G  G+PNYMANTES RAK
Sbjct: 350 EAVLRTVENSPHVFSPSSRPGSSGRRGTFTPTRSECSWGFFNGYSGYPNYMANTESFRAK 409

Query: 388 VRSLSAPRQRLELERYGSTKRSAHGFWDGSINSERDFAQHADFRNRASPTSDRL-SKFGS 446
           VRS SAPRQRLE E+Y S+KRS  GF++    SER FAQ  +FRN+A P S RL S+ GS
Sbjct: 410 VRSQSAPRQRLEFEKYSSSKRSVQGFYEADTISERGFAQQTNFRNKAYPVSGRLNSRLGS 469

Query: 447 INLR 450
            +LR
Sbjct: 470 TDLR 473

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136968|ref|XP_002322461.1| predicted protein [Populus trichocarpa] gi|222869457|gb|EEF06588.1| predicted protein [Populus trichocarpa]

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 277/480 (57%), Positives = 335/480 (69%), Gaps = 59/480 (12%)

Query: 1   MGFFRRLFGAKKAGTHSSSKEKRRWSFTSRSSSKQTTPSQSQSQP--QSLPQATKPDASY 58
           MGFFRRLFGAKK                 +S S +TTPS SQS+   Q L   T  DA+ 
Sbjct: 1   MGFFRRLFGAKK-----------------KSRSSKTTPSLSQSKKVDQILLSTTPYDAN- 42

Query: 59  EANLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSTGGRGAGVAAPPG-AHVRWQH 117
             NLDANKHAIAVAAATAAVAEAALAAA AAAEVVRLTS G  G G     G +H R+  
Sbjct: 43  --NLDANKHAIAVAAATAAVAEAALAAAQAAAEVVRLTSGGCGGGGGGNVLGGSHRRFVE 100

Query: 118 ELAAVRIQCAFRGYLARRALKALKALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVR 177
           E++AV+IQ AFRGYLARRAL+ALKALVKLQALVRGHIVRKQTADML+RMQTLV++QAR R
Sbjct: 101 EVSAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQTADMLRRMQTLVRLQARAR 160

Query: 178 ASRTPTSESLLSSSKSSLSRST-------------------------RCGSSSNFGDITD 212
           ASR+  S+S  ++SKSS SR                           RCGS++NF +  D
Sbjct: 161 ASRSHVSDSWHTTSKSSHSRYAVPASPSKDHLFRASSTKFDGPSILKRCGSNANFRESID 220

Query: 213 LDKGRLGSNWLDRWMEESVWNGHRVSQLKSGPPADDEKSDKILEVDTWKPHLNPRQHNRV 272
            DK +LGSNWL+RWMEES+WN H  + L++   ADDE+SDKILEVDTWKPH+  +Q NR 
Sbjct: 221 FDKVKLGSNWLERWMEESLWNDHGSNPLRNR-HADDERSDKILEVDTWKPHVKSQQSNRT 279

Query: 273 IRSSPHGSALDYNNHSYMTIDSPSKLSVKNMNPIPSVSPGEVLSLSSLKVPVGKSDAALR 332
            ++S H  A D+NN  +MT DSPSK+S K  NP+PS+  GE+  L SLK+P+G  +A  R
Sbjct: 280 FQTSQHALASDHNNQIFMTFDSPSKISKKAPNPMPSIPSGEI--LYSLKLPLGNDEAVSR 337

Query: 333 TADNSPQVSSASYRPGSSARR--GPFTPTRSEYSWGYFSGCIGHPNYMANTESSRAKVRS 390
           TA+NSP++ SA+ RPGSS R+  G FTPTRSE SWG+F+G  G+PNYM+NTESSRAKVRS
Sbjct: 338 TAENSPRLFSATSRPGSSGRKGGGHFTPTRSECSWGFFNGYPGYPNYMSNTESSRAKVRS 397

Query: 391 LSAPRQRLELERYGSTKRSAHGFWDGSINSERDFAQHADFRNRASPTSDRLSKFGSINLR 450
            SAPRQRLE E+YGS++RS  G++D  I SER FAQ+ +     S  S+RL   G+ NLR
Sbjct: 398 QSAPRQRLEFEKYGSSRRSVQGYYDADIRSERGFAQNTEL---PSGYSNRL---GTSNLR 451

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449485626|ref|XP_004157228.1| PREDICTED: uncharacterized LOC101216161 [Cucumis sativus]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 263/485 (54%), Positives = 322/485 (66%), Gaps = 50/485 (10%)

Query: 1   MGFFRRLFGAKK-------AGTHSSSKEKRRWSFTSRSSSKQTTPSQSQSQPQSLPQATK 53
           MGF RRLF   K       +    + K+ +RWSF     +  + P  + SQP     A  
Sbjct: 1   MGFLRRLFRPNKPPPALPDSTPGPNIKKNKRWSFGKSGHNHHSRPYATSSQPN----AFG 56

Query: 54  PDASYEANLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSTGGRGAGVAAPPGAHV 113
           P +SY   LDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTS+G   +       A+ 
Sbjct: 57  PSSSYTEPLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSSGTTHSN------ANR 110

Query: 114 RWQHELAAVRIQCAFRGYLARRALKALKALVKLQALVRGHIVRKQTADMLKRMQTLVKVQ 173
           RW  + AAV+IQ AFRGYLARRAL+ALKALVKLQALVRGHIVRKQ ADML+RMQTLV++Q
Sbjct: 111 RWMEDAAAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQMADMLRRMQTLVRLQ 170

Query: 174 ARVRASRTPTSESLLSSSKSSLSRS---------------------------TRCGSSSN 206
           +R  A R+  S+SL S+SKSSLS                              RCGS+SN
Sbjct: 171 SRACAGRSNLSDSLHSTSKSSLSHIRVQATPNGTGDQLCAHHSNKFDNSALLKRCGSNSN 230

Query: 207 FGDITDLDKGRLGSNWLDRWMEESVWNGHRVSQLKSGPPADDEKSDKILEVDTWKPHLNP 266
             D+T +D+  +GS+WLDRWMEE++WN  ++  LK+   A DEK+DKILEVDTWKPHL  
Sbjct: 231 LKDVTVVDRAPVGSSWLDRWMEENLWNNRQLP-LKN-IHAVDEKTDKILEVDTWKPHLKS 288

Query: 267 RQHNRVIRSSPHGSALDYNNH-SYMTIDSPSKLSVKNMNPIPSVSPGEVLSLSSLKVPVG 325
           + +    ++S    A D+ NH S+MTIDSPSK S K  NP+ S+S GEV SLSSLK PVG
Sbjct: 289 QGNINSFKNS--QMAPDFRNHQSFMTIDSPSKHSSKAANPVSSLSSGEV-SLSSLKFPVG 345

Query: 326 KSDAALRTADNSPQVSSASYRPGSSARRGPFTPTRSEYSWGYFSGCIGHPNYMANTESSR 385
           K + A RTA+NSPQV SAS R G++A+R   +PTRSEY+WGYFSG  G+PNYMANTESS+
Sbjct: 346 KYEQAPRTAENSPQVHSASSRRGNTAKRATLSPTRSEYAWGYFSGYAGYPNYMANTESSK 405

Query: 386 AKVRSLSAPRQRLELERYGSTKRSAHGFWDGSINSERDFAQHADFRNRASPTSDRLSKFG 445
           AKVRS SAP+QRLELE++GS KR A   WD    S    +   +  N A+  +DR++KF 
Sbjct: 406 AKVRSQSAPKQRLELEKFGSNKRYAQVSWDAWSFSNNGISHEPNSSNNANSVADRMTKFA 465

Query: 446 SINLR 450
           S   R
Sbjct: 466 STKSR 470

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561701|ref|XP_003549118.1| PREDICTED: uncharacterized protein LOC100785181 [Glycine max]

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 264/491 (53%), Positives = 324/491 (65%), Gaps = 55/491 (11%)

Query: 1   MGFFRRLFGAKK-------AGTHSSSKEKRRWSFTSRSSSKQTTPSQSQSQPQSLPQATK 53
           MGF RRLFG KK       +     SK+K+ WSF      K +T  +  + P +L   + 
Sbjct: 1   MGFLRRLFGGKKHHNPPPSSDASKPSKDKKTWSFV-----KHSTRYKPNTLPTTLNNNSN 55

Query: 54  PDAS-----YEANLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSTGGRGAGV--A 106
            D S     +  +LDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTS+ G  + +  A
Sbjct: 56  FDPSTSSSPFPESLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSSTGCASSLPAA 115

Query: 107 APPGAHVRWQHELAAVRIQCAFRGYLARRALKALKALVKLQALVRGHIVRKQTADMLKRM 166
           AP    V  +   AAV+IQ AFRGYLARRAL+ALKALVKLQALVRGHIVRKQT+DML+RM
Sbjct: 116 APQSRRVANETTAAAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQTSDMLRRM 175

Query: 167 QTLVKVQARVRASRTPTSESLLSSSKSSLSRS----------------------TRCGSS 204
           QTLV++Q+R RA+R   S+++  S KSSLS                         RC S+
Sbjct: 176 QTLVRLQSRARATRGNLSDNM-HSFKSSLSHYPVPEDYQHSLRAYSTKFDGSILKRCSSN 234

Query: 205 SNFGDITDLDKGRLGSNWLDRWMEESVWNGHRVSQLKSGPPADDEKSDKILEVDTWKPHL 264
           +NF DI D++K R GS+WLD WMEE+ W   R + LK+G   DDEKSDKILEVDTWKPHL
Sbjct: 235 ANFRDI-DVEKARFGSHWLDSWMEENSWRQTRDASLKNGH-LDDEKSDKILEVDTWKPHL 292

Query: 265 NPRQHNRVIRSSP--HGSALDYNNHSYMTIDSPSKLSVKNMNPIPSVSPGEVLSLSSLKV 322
           N    +     +   H  + DYNN +++  +SPSK S K +NP  S+S  EVL   SLK 
Sbjct: 293 NSHHSSGSSFQTSSHHYLSSDYNNENFVAYESPSKRSSKALNP--SLSSREVLPFGSLKS 350

Query: 323 PVGKSDAALRTADNSPQVSSASYRPGSSARRGPFTPTRSEYSWGYFSGCIGHPNYMANTE 382
             GK +AAL+  ++SPQ  SAS R GS ARRGPFTPT+SE +W +FSG  GHPNYMANTE
Sbjct: 351 HKGKEEAALQNVEDSPQAFSASSRLGSDARRGPFTPTKSECAWSFFSGYPGHPNYMANTE 410

Query: 383 SSRAKVRSLSAPRQRLELERYG-STKRSAHGFWDGSINSERDFAQHADFRNR--ASPTSD 439
           SSRAKVRS SAPRQR+E ERYG ST+RS  G W+   +S+RD    +DFR++  A+ TS 
Sbjct: 411 SSRAKVRSHSAPRQRMEFERYGHSTRRSLQGLWEAGPSSDRD----SDFRSKAYATTTSS 466

Query: 440 RLSKFGSINLR 450
            L++ GS NLR
Sbjct: 467 CLNRIGSANLR 477

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529263|ref|XP_003533215.1| PREDICTED: uncharacterized protein LOC100775743 [Glycine max]

 Score =  360 bits (925), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 261/495 (52%), Positives = 318/495 (64%), Gaps = 58/495 (11%)

Query: 1   MGFFRRLFGAKK----------AGTHSSSKEKRRWSFTSRSSSKQTTPSQSQSQPQSLPQ 50
           MGF RRLFG KK            +  +   K+ WSF      K +T  +  + P +L  
Sbjct: 1   MGFLRRLFGGKKHHNNPPPSSSDASKPNKDNKKTWSFI-----KHSTRYKPNTLPTTLNN 55

Query: 51  ATKPDAS-----YEANLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTS-TGGRGAG 104
            +  D+S     +  +LDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTS TGG  + 
Sbjct: 56  NSNFDSSTSSAPFTESLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSGTGGVSSR 115

Query: 105 VA-APPGAHVRWQHELAAVRIQCAFRGYLARRALKALKALVKLQALVRGHIVRKQTADML 163
            A AP    V  +   AAV+IQ AFRGYLARRAL+ALKALVKLQALVRGHIVRKQT+DML
Sbjct: 116 PAPAPQPRRVAEETTAAAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQTSDML 175

Query: 164 KRMQTLVKVQARVRASRTPTSESLLS---------------------SSKSSLSRSTRCG 202
           +RMQTLV++Q+R RA+R   S+++ S                     S+K   S   RC 
Sbjct: 176 RRMQTLVRLQSRARATRGNLSDNMHSFKSPLSHYPVPEDYKHSLRAYSTKFDGSILKRCS 235

Query: 203 SSSNFGDITDLDKGRLGSNWLDRWMEESVWNGHRVSQLKSGPPADDEKSDKILEVDTWKP 262
           S++NF DI D++K R GS+WLD WMEE+ W   R + LK G   DDEKSDKILEVDTWKP
Sbjct: 236 SNANFRDI-DVEKARFGSHWLDSWMEENSWRQTRDASLKIG-RLDDEKSDKILEVDTWKP 293

Query: 263 HLNPRQHNRVIRSSPHGSAL--DYNNHSYMTIDSPSKLSVKNMNPIPSVSPGEVLSLSSL 320
           HLN    +     +     L  DYNN +++  +SPSK S K +N  PS+S  EVL   SL
Sbjct: 294 HLNSHHSSGSSYQTSSHHYLYSDYNNENFVAYESPSKGSSKGLN--PSLSSREVLPFGSL 351

Query: 321 KVPVGKSD-AALRTADNSPQVSSASYRPGS-SARRGPFTPTRSEYSWGYFSGCIGHPNYM 378
               GK + AAL   ++SPQ  SAS R GS  ARRGPFTPT+SE +W +FSG  GHPNYM
Sbjct: 352 TFHKGKEEVAALPNVEDSPQAFSASSRLGSGGARRGPFTPTKSECAWSFFSGYPGHPNYM 411

Query: 379 ANTESSRAKVRSLSAPRQRLELERYG-STKRSAHGFWDGSINSERDFAQHADFRNR--AS 435
           ANTESSRAKVRS SAPRQR+E ERYG ST+RS  G W+   +S+RD    +DFR++  A+
Sbjct: 412 ANTESSRAKVRSHSAPRQRMEFERYGHSTRRSLQGLWEAEPSSDRD----SDFRSQAYAT 467

Query: 436 PTSDRLSKFGSINLR 450
            TS  L++ GS NLR
Sbjct: 468 TTSSSLNRIGSANLR 482

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575931|ref|XP_003556089.1| PREDICTED: uncharacterized protein LOC100783694 [Glycine max]

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 257/480 (53%), Positives = 310/480 (64%), Gaps = 54/480 (11%)

Query: 1   MGFFRRLFGAKKAGTHSSSKEKRRWSFTSRSSSKQTTPSQSQSQPQSLPQATKPDASYEA 60
           MGF RR+FGAKK     S+K  +RW+F      K T  ++S   P      T  D+S   
Sbjct: 1   MGFLRRIFGAKKPSDSKSAK--KRWTFL-----KHTVRNKSLPPPPPPSAVTYFDSS--T 51

Query: 61  NLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSTGGRGAGVAAPPGAHVRWQH-EL 119
            LDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTS GG  A    P     R  + E 
Sbjct: 52  PLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTS-GGVSATSTRPAAMAARVGNLET 110

Query: 120 AAVRIQCAFRGYLARRALKALKALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRAS 179
           AAVRIQ AFRGYLARRAL+ALKALVKLQALVRGHIVRKQ+ADML+RMQTLV++QA+ RAS
Sbjct: 111 AAVRIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQSADMLRRMQTLVRLQAQARAS 170

Query: 180 RTPTSESLLSSSKSSLSRS-----------------------TRCGSSSNFGDITDLDKG 216
           R   S+   + + SSLS                          RC S++N  ++ D ++ 
Sbjct: 171 RAHLSDPSFNFN-SSLSHYPVPEEYEHPPRGFSTKFDGSSILKRCSSNANSRNV-DSERA 228

Query: 217 RLGSNWLDRWME---ESVWNGHRVSQLKSGPPADDEKSDKILEVDTWKPHLNPRQHNRVI 273
           R  SNWL+RWME   +S   G   + LK+G P DD+KSDKILEVDTW+PH      +   
Sbjct: 229 RFDSNWLNRWMELDNKSSQTGD--ASLKNGRP-DDDKSDKILEVDTWRPHFKSHHSSSSF 285

Query: 274 RSSPHGSALDYNNHSYMTI-DSPSKLSVKNMNPIPSVSPGEVLSLSSLKVPVGKSDAALR 332
           +++ +  + DYNN ++    +SPSK S K +N   S S  EVL LSSLK   GK +A+ R
Sbjct: 286 QAAHYYLSSDYNNENFGAAHESPSKRSAKALN--QSFSSREVLQLSSLKFHKGKEEASSR 343

Query: 333 TADNSPQVSSASYRPGSSARR--GPFTPTRSEYSWGYFSGCIGHPNYMANTESSRAKVRS 390
           TADNSPQ  SA+ R GS ARR  GPFTPTRSE SWG+ SG  GHPNYMANTES RAKVRS
Sbjct: 344 TADNSPQTFSANSRNGSGARRGGGPFTPTRSECSWGFLSGYPGHPNYMANTESFRAKVRS 403

Query: 391 LSAPRQRLELERYGSTKRSAHGFWDGSINSERDFAQHADFRNRASPTSDRLSKFGSINLR 450
            SAPRQRLE +RYGST+R  H    GS NS+ D    +D RN+  P  +++++ GS NLR
Sbjct: 404 QSAPRQRLEFDRYGSTRRPVHLV--GS-NSDHD----SDLRNKVLPAFNQMNRIGSSNLR 456

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444045|ref|XP_003592300.1| hypothetical protein MTR_1g101330 [Medicago truncatula] gi|355481348|gb|AES62551.1| hypothetical protein MTR_1g101330 [Medicago truncatula]

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 253/487 (51%), Positives = 294/487 (60%), Gaps = 83/487 (17%)

Query: 1   MGFFRRLFGAKK-------AGTHSSSKEKRRWSFTSRSSSKQTTPSQSQSQPQSLPQA-T 52
           MGF RRLFGAKK       +G  S    KRRWSF  +SS       +++S PQ  P A  
Sbjct: 1   MGFLRRLFGAKKPIPPSDGSGKKSDKDNKRRWSFGKQSS-------KTKSLPQPPPSAFN 53

Query: 53  KPDASYEANLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSTGGRGAGVAAPPGAH 112
           + D+S    L+ NKHAIAVAAATAAVAEAALAAAHAAAEVVRLTS+G   AG +      
Sbjct: 54  QFDSS--TPLERNKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSSGV--AGSSNKTRGQ 109

Query: 113 VRWQHELAAVRIQCAFRGYLARRALKALKALVKLQALVRGHIVRKQTADMLKRMQTLVKV 172
           +R   E AAV+IQ AFRGYLARRAL+ALKALVKLQALVRGHIVRK+TADML+RMQTLV++
Sbjct: 110 LRLPEETAAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKKTADMLRRMQTLVRL 169

Query: 173 QARVRASRTPTSESLLSSSKSSLSRS-----------------------TRCGSSSNFGD 209
           Q + RASR   S   L S KSSLS                          RC S+SNF  
Sbjct: 170 QTKARASRAHLSSDNLHSFKSSLSHYPVPEEYEQPHHVYSTKFGGSSILKRCSSNSNFRK 229

Query: 210 ITDLDKGRLGSNWLDRWMEESVWNGHRVSQLKSGPPADDEKSDKILEVDTWKPHLNPRQH 269
           I + +K R GSNWLD WM+E+  +  + +  K+  P D+ KSDKILEVDTWKP LN  + 
Sbjct: 230 I-ESEKPRFGSNWLDHWMQENSISQTKNASSKNRHP-DEHKSDKILEVDTWKPQLNKNE- 286

Query: 270 NRVIRSSPHGSALDYNNHSYMTIDSPSKLSVKNMNPIPSVSPGEVLSLSSLKVPVGKSD- 328
                          NN + M+ +SPSK S K  N              SL V   K+  
Sbjct: 287 ---------------NNVNSMSNESPSKHSTKAQN-------------QSLSVKFHKAKE 318

Query: 329 --AALRTADNSPQVSSASYRPGSSARRG-PFTPTRSEYSWGYFSGCIGHPNYMANTESSR 385
             AA RTADNSPQ  SAS R GS  RR  PFTPTRSE SW +  G  G+PNYMANTESSR
Sbjct: 319 EVAASRTADNSPQTFSASSRNGSGVRRNTPFTPTRSECSWSFLGGYSGYPNYMANTESSR 378

Query: 386 AKVRSLSAPRQRLELERYGSTKRSAHGFWD-GSINSERDFAQHADFR-NRASPTSDRLSK 443
           AKVRS SAPRQR E E Y ST+R   G WD GS NS+ D    +D R N+ SP   R ++
Sbjct: 379 AKVRSQSAPRQRHEFEEYSSTRRPFQGLWDVGSTNSDND----SDSRSNKVSPALSRFNR 434

Query: 444 FGSINLR 450
            GS NLR
Sbjct: 435 IGSSNLR 441

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426832|ref|XP_002276651.1| PREDICTED: uncharacterized protein LOC100254717 [Vitis vinifera]

 Score =  267 bits (683), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 226/489 (46%), Positives = 282/489 (57%), Gaps = 66/489 (13%)

Query: 3   FFRRLFGAKKAGTHSSSKE----------KRRWSFTSRSSSKQTTPSQSQSQPQSLPQAT 52
           +FR L G KK  + + +            KRRWSF  RS  ++     +  +  +L    
Sbjct: 7   WFRGLLGLKKTDSPAPTPAPAPARLDKSVKRRWSFV-RSYREKDHTRHANDRRGALYGEP 65

Query: 53  KPDASYEANLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSTGGRGAGVAAPPGAH 112
            P ++Y   +D NKHAIAVAAATAAVAEAA+AAA AAA VVRLTS+G R A  +A   A 
Sbjct: 66  HPPSAYADGVDPNKHAIAVAAATAAVAEAAVAAAQAAAAVVRLTSSG-RSAAPSAYVSAG 124

Query: 113 VRWQHELAAVRIQCAFRGYLARRALKALKALVKLQALVRGHIVRKQTADMLKRMQTLV-- 170
              + E A ++IQ  FRGYLARRAL+ALKALVKLQALVRGHIVRKQTADML+RMQ LV  
Sbjct: 125 FSAREEWAVIKIQSLFRGYLARRALRALKALVKLQALVRGHIVRKQTADMLRRMQALVRA 184

Query: 171 ---------------------------------KVQARVRASRTPTSESLLSSSKSSLSR 197
                                            K +  +RA      +S      S L R
Sbjct: 185 QARARAGRAQISESSHSSGKSSQFHHPGPATPEKFEHAIRAKNMKQDQS------SILKR 238

Query: 198 STRCGSSSNFGDITDLDKGRLGSNWLDRWMEESVWNGHRVSQLKSGPPADDEKSDKILEV 257
           ++   S  N   I D DK  L  NW DR ++E  W+  + S +++GP  DDEKSDKILE+
Sbjct: 239 NSSKASGRN---IIDQDKTHLSRNWSDRRLDEGSWD-QQGSSIRAGP-TDDEKSDKILEI 293

Query: 258 DTWKPHLNPRQHNRVIRSSPHGSALDYNNHSYMTIDSPSKLSVKNMNPIPSVSPGEVLSL 317
           DT KP+  P++ N + +SS HG A D  +HS+ T    SK S  +   +PS S  EV SL
Sbjct: 294 DTGKPNFTPKRRN-LFQSSHHGVASDQISHSFTT----SKDSTTHQT-VPSPSSCEVQSL 347

Query: 318 SSLKVPVGKSDAALRTADNSPQVSSASYRPGSSARRGPFTPTRSEYSWGYFSGCIGHPNY 377
           S LK      + +  TADNSPQ  SAS R   S+RRGPFTPT+S+ S  Y SG   HPNY
Sbjct: 348 SPLKFCQEVEEGSFCTADNSPQFYSASSR-AGSSRRGPFTPTKSDGSRSYLSGYSDHPNY 406

Query: 378 MANTESSRAKVRSLSAPRQRLELERYGSTKR-SAHGFWDGSINSERDFAQHADFRNRASP 436
           MA TESS+AKVRS SAP+QR + ER  STKR S HGF D   N++R  A HA+F ++A P
Sbjct: 407 MAYTESSKAKVRSFSAPKQRPQYERSSSTKRYSVHGFGDSRSNAQRVSAMHANFTSKAYP 466

Query: 437 TSDRLSKFG 445
            S RL + G
Sbjct: 467 GSGRLDRLG 475

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777534|emb|CAN75939.1| hypothetical protein VITISV_040960 [Vitis vinifera]

 Score =  251 bits (640), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 223/517 (43%), Positives = 283/517 (54%), Gaps = 86/517 (16%)

Query: 3   FFRRLFGAKKAGTHSSSKE----------KRRWSFTSRSSSKQTTPSQSQSQPQSLPQAT 52
           +FR L G KK  + + +            KRRWSF  RS  ++     +  +  +L    
Sbjct: 7   WFRGLLGLKKTDSPAPTPAPAPARLDKSVKRRWSFV-RSYREKDHTRHANDRRGALYGEP 65

Query: 53  KPDASYEANLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSTGGRGAGVAAPPGAH 112
            P ++Y   +D NKHAIAVAAATAAVAEAA+AAA AAA VVRLTS+G R A  +A   A 
Sbjct: 66  HPPSAYADGVDPNKHAIAVAAATAAVAEAAVAAAQAAAAVVRLTSSG-RSAAPSAYVSAG 124

Query: 113 VRWQHELAAVRIQCAFRGYL----------------------------ARRALKALKALV 144
              + E A ++IQ  FRGYL                            ARRAL+ALKALV
Sbjct: 125 FSAREEWAVIKIQSLFRGYLRFAASLGKINMAEAEAADTVTTSSFCVSARRALRALKALV 184

Query: 145 KLQALVRGHIVRKQTADMLKRMQTLV---------------------------------- 170
           KLQALVRGHIVRKQTADML+RMQ LV                                  
Sbjct: 185 KLQALVRGHIVRKQTADMLRRMQALVRAQARARAGRAQISESSHSSGKSSQFHHPGPATP 244

Query: 171 -KVQARVRASRTPTSESLLSSSKSSLSRSTRCGSSSNFGDITDLDKGRLGSNWLDRWMEE 229
            K +  +RA      +S +     ++    R  S ++  +I D DK  L  NW DR ++E
Sbjct: 245 EKFEHAIRAKNMKQDQSSILKV-CAVIFGLRNSSKASGRNIIDQDKTHLSRNWSDRRLDE 303

Query: 230 SVWNGHRVSQLKSGPPADDEKSDKILEVDTWKPHLNPRQHNRVIRSSPHGSALDYNNHSY 289
             W+  + S +++GP  DDEKSDKILE+DT KP+  P++ N + +SS HG A D  +HS+
Sbjct: 304 GSWD-QQGSSIRAGP-TDDEKSDKILEIDTGKPNFTPKRRN-LFQSSHHGVASDQISHSF 360

Query: 290 MTIDSPSKLSVKNMNPIPSVSPGEVLSLSSLKVPVGKSDAALRTADNSPQVSSASYRPGS 349
            T    SK S  +   +PS S  EV SLS LK      + +  TADNSPQ  SAS R   
Sbjct: 361 TT----SKDSTTHQT-VPSPSSCEVQSLSPLKFCQEVEEGSFCTADNSPQFYSASSR-AG 414

Query: 350 SARRGPFTPTRSEYSWGYFSGCIGHPNYMANTESSRAKVRSLSAPRQRLELERYGSTKR- 408
           S+RRGPFTPT+S+ S  Y SG   HPNYMA TESS+AKVRS SAP+QR + ER  STKR 
Sbjct: 415 SSRRGPFTPTKSDGSRSYLSGYSDHPNYMAYTESSKAKVRSFSAPKQRPQYERSSSTKRY 474

Query: 409 SAHGFWDGSINSERDFAQHADFRNRASPTSDRLSKFG 445
           S HGF D   N++R  A HA+F ++A P S RL + G
Sbjct: 475 SVHGFGDSRSNAQRVSAMHANFTSKAYPGSGRLDRLG 511

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058589|ref|XP_002299555.1| predicted protein [Populus trichocarpa] gi|222846813|gb|EEE84360.1| predicted protein [Populus trichocarpa]

 Score =  238 bits (607), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 217/480 (45%), Positives = 271/480 (56%), Gaps = 53/480 (11%)

Query: 3   FFRRLFGAKKAG------THSSSKEKRRWSFTSRSSSKQTTPSQSQSQPQSLPQATKPDA 56
           +FR + G KK          + SK+KRRWSF      K         Q Q   +A+K   
Sbjct: 7   WFRAVLGLKKPDPPLDHPQTTRSKDKRRWSFVKSRREK----DHDHQQRQQDIEASKTGV 62

Query: 57  SY--EANLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSTGGRGAGVAAPPGAHVR 114
            Y  E   D NKHA+AVAAATAAVAEAA+AAA AAAEVVRLTS+G       A     + 
Sbjct: 63  LYGQEFEEDPNKHAVAVAAATAAVAEAAVAAAQAAAEVVRLTSSGRCVNNSVANVSGSLG 122

Query: 115 WQHELAAVRIQCAFRGYLARRALKALKALVKLQALVRGHIVRKQTADMLKRMQTLVKVQA 174
            + +LAAV+IQ AFRGYLARRAL+ALKALV+LQALVRGHI RK+TA+ L RMQ L++ Q+
Sbjct: 123 LREDLAAVKIQAAFRGYLARRALRALKALVRLQALVRGHIERKRTAEWLHRMQALLRAQS 182

Query: 175 RVRASRT--------------------PTSESL------LSSSKSSLSRSTRCGSSSNFG 208
           R R+ R                     PT E         S      S   R GS     
Sbjct: 183 RARSGRAQISESSHSSSKSSRFQHPGPPTPEKFEHAIRARSGKYEQSSILKRTGSKCKGR 242

Query: 209 DITDLDKGRLGSNWLDRWMEESVWNGHRVSQLKSGPPADDEKSDKILEVDTWKPHLNPRQ 268
            I DLD   L  NW +R M++  W+ H+V    +G   DD+KSDKILE+DT KPH+ P++
Sbjct: 243 AIGDLDVAHLSLNWSERRMDDQTWD-HQVPLAGTG-TIDDDKSDKILEIDTGKPHITPKR 300

Query: 269 HNRVIRSSPHGSALDYNNHSYMTI-DSPSKLSVKNMNPIPSVSPGEVLSLSSLKVPVGKS 327
            N  +  S H S  D  +HS+ T  DS +  +V      PS S  EV SLS LK      
Sbjct: 301 RN--LFHSSHLSLSDQYSHSFTTTKDSTAHQTV------PSPSSCEVQSLSPLKF-SHVV 351

Query: 328 DAALRTADNSPQVSSASYRPGSSARRGPFTPTRSEYSWGYFSGCIGHPNYMANTESSRAK 387
           + AL TA+NSPQ  SAS R G S++R PFTP+RS+ S  +  G  G+PNYM NTESSRAK
Sbjct: 352 EEALCTAENSPQFYSASSR-GGSSKRSPFTPSRSDGSRNFLIGYYGYPNYMCNTESSRAK 410

Query: 388 VRSLSAPRQRLELERYGSTKR-SAHGFWDG-SINSERDFAQHADFRNRASPTSDRLSKFG 445
            RSLSAP+QR + ER  ST+R S  G  +  S +++   A  A F ++A P S RL K G
Sbjct: 411 ARSLSAPKQRPQYERSSSTRRYSVLGCGEPRSSSAQHASALRASFSSKAYPGSGRLDKLG 470

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	450
TAIR|locus:2182920	401	IQD24 "AT5G07240" [Arabidopsis	0.206	0.231	0.51	4.6e-38
TAIR|locus:2174088	403	IQD23 "AT5G62070" [Arabidopsis	0.544	0.607	0.288	7.7e-21
TAIR|locus:2127243	484	IQD22 "AT4G23060" [Arabidopsis	0.235	0.219	0.450	4.8e-18
TAIR|locus:2088319	389	IQD26 "AT3G16490" [Arabidopsis	0.282	0.326	0.291	1.4e-08
TAIR|locus:2134628	534	iqd17 "AT4G00820" [Arabidopsis	0.308	0.260	0.294	1.9e-08
TAIR|locus:2130200	387	IQD19 "AT4G14750" [Arabidopsis	0.237	0.276	0.307	5.5e-08
TAIR|locus:2200945	527	IQD18 "AT1G01110" [Arabidopsis	0.366	0.313	0.290	1.1e-07
TAIR|locus:2119951	399	IQD25 "AT4G29150" [Arabidopsis	0.342	0.385	0.327	1.5e-07
TAIR|locus:2090409	422	IQD5 "AT3G22190" [Arabidopsis	0.131	0.139	0.457	2.5e-07
TAIR|locus:2057459	416	IQD6 "AT2G26180" [Arabidopsis	0.14	0.151	0.444	2.9e-07

TAIR|locus:2182920 IQD24 "AT5G07240" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 4.6e-38, Sum P(3) = 4.6e-38
 Identities = 51/100 (51%), Positives = 64/100 (64%)

Query:   333 TADNSPQVSSAS-YRPGSSARRGPFTPTRSEYSWGYFSGCIGHPNYMANTESSRAKVRSL 391
             + +NSPQ+ S +    G S R+ PFTP RSEY   Y+SG   HPNYMANTES +AKVRS 
Sbjct:   270 SVENSPQLRSRTGSSSGGSRRKTPFTPARSEYE--YYSGY--HPNYMANTESYKAKVRSQ 325

Query:   392 SAPRQRLE-LERYGSTKRSAHG-FWDGSINSERDFAQHAD 429
             SAPRQRL+ L      KRS  G ++  +  +ER F Q +D
Sbjct:   326 SAPRQRLQDLPSESGYKRSIQGQYYYYTPAAERSFDQRSD 365

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2174088 IQD23 "AT5G62070" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 7.7e-21, P = 7.7e-21
 Identities = 80/277 (28%), Positives = 101/277 (36%)

Query:     1 MGFFRRLFGAKKAGTHS-SSKEKRRWSFXXXXXXXXXXXXXXXXXXXXXXXATKPDASYE 59
             MGFF RLFG+KK    + SS++KRRWSF                        T      +
Sbjct:     1 MGFFGRLFGSKKKSDKAASSRDKRRWSFTTRSSNSSKRAPA----------VTSASVVEQ 50

Query:    60 ANLDANKHXXXXXXXXXXXXXXXXXXXXXXXXXXRLTSTXXXX-------XXXXXXXXXX 112
               LDA+KH                          RLTS                      
Sbjct:    51 NGLDADKHAIAVAAATAAVAEAALTAAHAAAEVVRLTSGNGGRNVGGGGNSSVFQIGRSN 110

Query:   113 XXW-QHELAAVRIQCAFRGYXXXXXXXXXXXXXXXXXXXXGHIVRKQTADMLKRMQTLVK 171
               W Q  +AA++IQ AFRGY                    GHIVRKQTADML+RMQTLV+
Sbjct:   111 RRWAQENIAAMKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQTADMLRRMQTLVR 170

Query:   172 VQARVRAXXXXXXXXXXXXXXXXXXXXXXXXXXXNFGDITDLDKGRLGSNWLDRWMEESV 231
             +Q++ RA                                  +    + S  LD       
Sbjct:   171 LQSQARARASRSSHSSASFHSSTALLFPSSSSSPRSLHTRCVSNAEVSS--LD------- 221

Query:   232 WNGHRVSQLKSGPPADD-EKSDKILEVDTWKPHLNPR 267
                HR    +    A++ E  DKILEVDTWKPH +P+
Sbjct:   222 ---HRGGSKRLDWQAEESENGDKILEVDTWKPHYHPK 255

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2127243 IQD22 "AT4G23060" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 4.8e-18, Sum P(3) = 4.8e-18
 Identities = 55/122 (45%), Positives = 69/122 (56%)

Query:   333 TADNSPQVSSASYRPGSSARRGPFTPTRSEYSWGYFSGCIG-HPNYMANTESSRAKVRSL 391
             TA+NSPQ+ SA+ R    ++R  FT +    S    S C G HP+YMA TESSRAK RS 
Sbjct:   363 TAENSPQLYSATSR----SKRSAFTASSIAPSDCTKSCCDGDHPSYMACTESSRAKARSA 418

Query:   392 SAPRQRLEL--ERYGSTKRSAHGFWD----GSINS--ERDFAQHADFRNRASPTSDRLSK 443
             SAP+ R +L  ER  S+KR   GF D    G   S  ++  A H  F N+A P S RL +
Sbjct:   419 SAPKSRPQLFYER-PSSKR--FGFVDLPYCGDTKSGPQKGSALHTSFMNKAYPGSGRLDR 475

Query:   444 FG 445
              G
Sbjct:   476 LG 477

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=IEP

TAIR|locus:2088319 IQD26 "AT3G16490" [Arabidopsis thaliana (taxid:3702)]

 Score = 102 (41.0 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
 Identities = 39/134 (29%), Positives = 63/134 (47%)

Query:   274 RSSPHGSALDYNNHSYMTIDS-PSKLSVKNMNPIPSVSPGE-VLSLSSLKVPVGKSDAAL 331
             +S+ + +A D  +   + ID+  +K   K MN   S    + +      +          
Sbjct:   204 QSNHNNNAYDETSPKIVEIDTYKTKSRSKRMNVAVSECGDDFIYQAKDFEWSFPGEKCKF 263

Query:   332 RTADNSPQVSSASYRPGSSARRGPFTPTRSEYSWGYFSGC---IGHPNYMANTESSRAKV 388
              TA N+P+ SS+     ++    P +P +S      F      +  P+YMANT+S +AKV
Sbjct:   264 PTAQNTPRFSSSM--ANNNYYYTPPSPAKSVCRDACFRPSYPGLMTPSYMANTQSFKAKV 321

Query:   389 RSLSAPRQRLELER 402
             RS SAPRQR + +R
Sbjct:   322 RSHSAPRQRPDRKR 335

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2134628 iqd17 "AT4G00820" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 1.9e-08, Sum P(3) = 1.9e-08
 Identities = 48/163 (29%), Positives = 77/163 (47%)

Query:   253 KILEVDTWKPHLNPRQHNRVIRS---SPHGSALDYNNHSYMTIDSPSKLSVKNMNPIPSV 309
             K +E+DT +P+L  R ++R   S   S   S+    +H Y       + +  +  P P+ 
Sbjct:   322 KTVEIDTSQPYLT-RGNSRTGASPSRSQRPSSPSRTSHHYQ------QHNFSSATPSPAK 374

Query:   310 SPGEVLSLSSLKVPVGKSD-AALRTADNSPQVSSASYRPGSSARRGPFTPTRSEYSWGYF 368
             S    + + S    + + D +A     N+P + S +Y    +AR G    T +  +    
Sbjct:   375 S--RPIQIRSASPRIQRDDRSAYNYTSNTPSLRS-NY--SFTARSGYSVCTTTTTATN-- 427

Query:   369 SGCIGHPNYMANTESSRAKVRSLSAPRQRL---ELERYGSTKR 408
                   PNYMA TES++A++RS SAPRQR    E ER  S ++
Sbjct:   428 ---AALPNYMAITESAKARIRSQSAPRQRPSTPEKERISSARK 467

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2130200 IQD19 "AT4G14750" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 5.5e-08, Sum P(3) = 5.5e-08
 Identities = 39/127 (30%), Positives = 58/127 (45%)

Query:   274 RSSPHGSALDYNNHSYMTIDSPSKLSVKNMNPIPSVSPGEVLSLSSLKVPVGKSDA-ALR 332
             R+S H + +  NN  +   ++   + +   + + S +P  +  +S         D  +  
Sbjct:   179 RTSIHKTRI--NNFYHENEENIKIVEMDIQSKMYSPAPSALTEMSPRAYSSHFEDCNSFN 236

Query:   333 TADNSPQVSSA--SYRPGSSARRGPFTPTRSEYSWGYFSGCIGHPNYMANTESSRAKVRS 390
             TA +SPQ  S    Y  G          T S Y +  F      PNYMANT+SS+AK RS
Sbjct:   237 TAQSSPQCFSRFKEYYNGD---------TLSSYDYPLF------PNYMANTQSSKAKARS 281

Query:   391 LSAPRQR 397
              SAP+QR
Sbjct:   282 QSAPKQR 288

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2200945 IQD18 "AT1G01110" [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
 Identities = 56/193 (29%), Positives = 86/193 (44%)

Query:   225 RWMEESVWNGHRV--SQLKSGPPADDEKSDKILEVDTWKPH--LNPRQHNRVIR-SSPHG 279
             +W++   W   R    +  S    D   S K +E+DT +P+        +R  R SSP  
Sbjct:   288 KWLDR--WMATRPWDKRASSRASVDQRVSVKTVEIDTSQPYSRTGAGSPSRGQRPSSPSR 345

Query:   280 SALDYNNHSYMTIDSPSKLSVKNMNPIPSVSPGEVLSLSSLKVPVGKSD-AALRTADNSP 338
             ++  Y + +  +  +PS    + +  I S SP         + P    D AA     N+P
Sbjct:   346 TSHHYQSRNNFSA-TPSPAKSRPIL-IRSASP------RCQRDPREDRDRAAYSYTSNTP 397

Query:   339 QVSSASYRPGSSARRGPFTPTRSEYSWGYFSGCIGHPNYMANTESSRAKVRSLSAPRQRL 398
              + S +Y    +AR G    T    +          PNYMA+TES++A++RS SAPRQR 
Sbjct:   398 SLRS-NY--SFTARSGCSISTTMVNNASLL------PNYMASTESAKARIRSHSAPRQRP 448

Query:   399 ---ELERYGSTKR 408
                E +R G  K+
Sbjct:   449 STPERDRAGLVKK 461

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2119951 IQD25 "AT4G29150" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
 Identities = 58/177 (32%), Positives = 84/177 (47%)

Query:   249 EKSDKILEVDTWKPHLNPRQHNRVIRSSPHGSALDYNNHSYM-TIDSPSKLSVKNMNPIP 307
             E++ KI+EVDT      P  +   IR+ P  S  D+ ++ +  T+ SP  LS + + P  
Sbjct:   222 EETAKIVEVDTGT---RPGTYR--IRA-PVLSGSDFLDNPFRRTLSSP--LSGR-VPPRL 272

Query:   308 SVSPGEVLSLSSLKVPVGKSDAALRTADNSPQVSSASYRPGSSARRGPFTPTRSEYS-WG 366
             S+   E    SS K P  +S    R +  SP  S      G  A       T ++ + + 
Sbjct:   273 SMPKPEWEECSS-KFPTAQSTP--RFSGGSPARSVCCSGGGVEAE----VDTEADANRFC 325

Query:   367 YFSGCIGHPNYMANTESSRAKVRSLSAPRQRLELERY-GSTKRSAHGFWDGSINSER 422
             + SG   +  YMA+T S RAK+RS SAPRQR E     G  +RS  G   G +  +R
Sbjct:   326 FLSGEF-NSGYMADTTSFRAKLRSHSAPRQRPESNASAGGWRRSIGG---GGVRMQR 378

GO:0005516 "calmodulin binding" evidence=ISS

TAIR|locus:2090409 IQD5 "AT3G22190" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
 Identities = 27/59 (45%), Positives = 31/59 (52%)

Query:   120 AAVRIQCAFRGYXXXXXXXXXXXXXXXXXXXXGHIVRKQTADMLKRMQTLVKVQARVRA 178
             AA RIQ A+RG+                    GH VRKQ A  L+ MQ LV+VQARVRA
Sbjct:    90 AATRIQTAYRGFLARRALRALKGLVRLQALVRGHAVRKQAAVTLRCMQALVRVQARVRA 148

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2057459 IQD6 "AT2G26180" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 2.9e-07, Sum P(3) = 2.9e-07
 Identities = 28/63 (44%), Positives = 33/63 (52%)

Query:   116 QHELAAVRIQCAFRGYXXXXXXXXXXXXXXXXXXXXGHIVRKQTADMLKRMQTLVKVQAR 175
             + E AA+RIQ AFRG+                    G  VRKQ A  L+ MQ LV+VQAR
Sbjct:    82 REEWAAIRIQTAFRGFLARRALRALKGIVRLQALVRGRQVRKQAAVTLRCMQALVRVQAR 141

Query:   176 VRA 178
             VRA
Sbjct:   142 VRA 144

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00151198 hypothetical protein (451 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	450
pfam13178	105	pfam13178, DUF4005, Protein of unknown function (D	3e-13
pfam00612	21	pfam00612, IQ, IQ calmodulin-binding motif	0.001
smart00015	23	smart00015, IQ, Calmodulin-binding motif	0.001

>gnl|CDD|221960 pfam13178, DUF4005, Protein of unknown function (DUF4005)

 Score = 65.3 bits (159), Expect = 3e-13
 Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 336 NSPQVSSASYRPGSSARRGPFTPTRSEYSWGYFSGCIGHPNYMANTESSRAKVRSLSAPR 395
           N+P++ S+S    S +   P  PT+SE      +     PNYMA TES++AKVRS SAPR
Sbjct: 1   NTPRLLSSSSSKSSRSS--PSNPTKSERDDNSSTSSPSLPNYMAATESAKAKVRSQSAPR 58

Query: 396 QRLELER--YGSTKRSAHGF 413
           QR E E    GS+       
Sbjct: 59  QRPETEERESGSSATKRLSL 78

This is a C-terminal region of plant IQ-containing putative calmodulin-binding proteins. Length = 105

>gnl|CDD|201341 pfam00612, IQ, IQ calmodulin-binding motif

 Score = 36.2 bits (85), Expect = 0.001
 Identities = 12/19 (63%), Positives = 16/19 (84%)

Query: 120 AAVRIQCAFRGYLARRALK 138
           AA++IQ A+RGYLAR+  K
Sbjct: 3   AAIKIQAAWRGYLARKRYK 21

Calmodulin-binding motif. Length = 21

>gnl|CDD|197470 smart00015, IQ, Calmodulin-binding motif

 Score = 35.8 bits (84), Expect = 0.001
 Identities = 12/23 (52%), Positives = 16/23 (69%)

Query: 116 QHELAAVRIQCAFRGYLARRALK 138
           +   AA+ IQ A+RGYLAR+  K
Sbjct: 1   RLTRAAIIIQAAWRGYLARKRYK 23

Short calmodulin-binding motif containing conserved Ile and Gln residues. Length = 23

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	450
PF13178	102	DUF4005: Protein of unknown function (DUF4005)	99.67
PF00612	21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	97.99
KOG0160	862	consensus Myosin class V heavy chain [Cytoskeleton	97.58
smart00015	26	IQ Short calmodulin-binding motif containing conse	97.49
PTZ00014	821	myosin-A; Provisional	96.73
KOG0160	862	consensus Myosin class V heavy chain [Cytoskeleton	96.71
KOG0520	975	consensus Uncharacterized conserved protein, conta	96.68
PF00612	21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	95.2
KOG0164	1001	consensus Myosin class I heavy chain [Cytoskeleton	94.96
KOG2128	1401	consensus Ras GTPase-activating protein family - I	94.11
smart00015	26	IQ Short calmodulin-binding motif containing conse	92.1
COG5022	1463	Myosin heavy chain [Cytoskeleton]	91.98
PTZ00014	821	myosin-A; Provisional	90.31
KOG0942	1001	consensus E3 ubiquitin protein ligase [Posttransla	83.45
KOG0520	975	consensus Uncharacterized conserved protein, conta	83.27
KOG4427	1096	consensus E3 ubiquitin protein ligase [Posttransla	82.55
KOG0162	1106	consensus Myosin class I heavy chain [Cytoskeleton	80.36

>PF13178 DUF4005: Protein of unknown function (DUF4005)

Probab=99.67  E-value=8.3e-17  Score=138.51  Aligned_cols=78  Identities=45%  Similarity=0.540  Sum_probs=55.5

Q ss_pred             CCCCccCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCcccccchhhhhcccCCCccchhh----hccCCccC-CC
Q 013059          336 NSPQVSSASYRPGSSARRGPFTPTRSEYSWGYFSGCIGHPNYMANTESSRAKVRSLSAPRQRLEL----ERYGSTKR-SA  410 (450)
Q Consensus       336 ~sP~~~S~ssr~~~s~rrsp~tP~rsd~s~~~~~~~p~~PsYMAnTESSKAKvRSQSAPKQRpe~----Er~~S~RR-Sl  410 (450)
                      |+|++++...+....  ....++.+.++.+..+.   .+|||||+|||+|||+|+||+||||++.    ++...++| ||
T Consensus         1 nsPr~~s~~~~~~~~--~~~~s~~~~~~~~~s~~---~~PsYMa~TeSakAK~RsqSaPrqR~~~~~~~~~~~~~kR~S~   75 (102)
T PF13178_consen    1 NSPRLRSASSRSSSS--PSRSSPQKSSCRRSSFG---SLPSYMAATESAKAKARSQSAPRQRPGTPERAEKQSSKKRLSL   75 (102)
T ss_pred             CCCCccCcccCCCCC--cccCCCcccccccCcCC---CCCCccchhhhhhhhhhccCCcccCCCcccccccccccccccc
Confidence            577765554332221  23334566666665544   2999999999999999999999999996    56667788 99


Q ss_pred             CCCCCCCC
Q 013059          411 HGFWDGSI  418 (450)
Q Consensus       411 ~g~~~~~~  418 (450)
                      ++......
T Consensus        76 ~~~~~~~~   83 (102)
T PF13178_consen   76 PGSSNSGS   83 (102)
T ss_pred             CCCCCCCc
Confidence            98765443

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K

Probab=97.99  E-value=7.6e-06  Score=51.28  Aligned_cols=21  Identities=52%  Similarity=0.754  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 013059          118 ELAAVRIQCAFRGYLARRALK  138 (450)
Q Consensus       118 e~AAi~IQsafRGyLaRr~~~  138 (450)
                      +.|||+||+.||||++|+.|+
T Consensus         1 ~~aai~iQ~~~R~~~~Rk~~k   21 (21)
T PF00612_consen    1 RKAAIIIQSYWRGYLARKRYK   21 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcC
Confidence            368999999999999999885

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]

Probab=97.58  E-value=0.00015  Score=82.24  Aligned_cols=65  Identities=31%  Similarity=0.435  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 013059          116 QHELAAVRIQCAFRGYLARRALKALK-ALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRTPTS  184 (450)
Q Consensus       116 ree~AAi~IQsafRGyLaRr~~~alr-~ivrLQAlvRG~~vRrq~~~tl~~~~a~v~iQs~vR~~~~R~~  184 (450)
                      ....+++.||+.||||+.|+.|..+| +++.||+++||.++|+   ..+ ...|++.||..+|++..|+.
T Consensus       671 vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~---~~~-~~~aai~~q~~~r~~~~r~~  736 (862)
T KOG0160|consen  671 VLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR---ETE-REAAAIGIQKECRSYLNRRR  736 (862)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH---hhH-HHHHHHHhHHHHHHHHHHHH
Confidence            34567788999999999999999999 8999999999999999   222 44466677777777766553

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues

Probab=97.49  E-value=9.6e-05  Score=48.48  Aligned_cols=22  Identities=55%  Similarity=0.757  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 013059          117 HELAAVRIQCAFRGYLARRALK  138 (450)
Q Consensus       117 ee~AAi~IQsafRGyLaRr~~~  138 (450)
                      ++.+|++||+.||||++|+.|+
T Consensus         2 ~~~aa~~IQa~~Rg~~~r~~y~   23 (26)
T smart00015        2 LTRAAIIIQAAWRGYLARKRYK   23 (26)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Confidence            5789999999999999999984

Calmodulin-binding motif.

>PTZ00014 myosin-A; Provisional

Probab=96.73  E-value=0.0025  Score=72.72  Aligned_cols=41  Identities=20%  Similarity=0.254  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHH
Q 013059          119 LAAVRIQCAFRGYLARRALKALK-ALVKLQALVRGHIVRKQT  159 (450)
Q Consensus       119 ~AAi~IQsafRGyLaRr~~~alr-~ivrLQAlvRG~~vRrq~  159 (450)
                      ..++.||++||||++|+.|..++ +++.||+.+||+++++..
T Consensus       778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~  819 (821)
T PTZ00014        778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI  819 (821)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            36889999999999999999877 999999999999998763

>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]

Probab=96.71  E-value=0.0056  Score=69.85  Aligned_cols=68  Identities=26%  Similarity=0.285  Sum_probs=57.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 013059          114 RWQHELAAVRIQCAFRGYLARRALKALKALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRTPTS  184 (450)
Q Consensus       114 ~~ree~AAi~IQsafRGyLaRr~~~alr~ivrLQAlvRG~~vRrq~~~tl~~~~a~v~iQs~vR~~~~R~~  184 (450)
                      +++...+++.||+.+||+++|+......+.+.||..+|+++.|++|...   ..+++.||+.+|+..+|..
T Consensus       692 f~~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~~~---~~~~~~~qs~~r~~~~r~e  759 (862)
T KOG0160|consen  692 FLQLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRYRAL---IPASITIQSGVRAMLARNE  759 (862)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccc
Confidence            3567789999999999999998433334899999999999999999544   4588999999999999883

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=96.68  E-value=0.0014  Score=75.08  Aligned_cols=71  Identities=30%  Similarity=0.348  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHhccCcchh
Q 013059          116 QHELAAVRIQCAFRGYLARRALKALK-ALVKLQALVRGHIVRKQTADMLKR-------MQTLVKVQARVRASRTPTSES  186 (450)
Q Consensus       116 ree~AAi~IQsafRGyLaRr~~~alr-~ivrLQAlvRG~~vRrq~~~tl~~-------~~a~v~iQs~vR~~~~R~~e~  186 (450)
                      ....||..||..||||+.|+.+..++ -+|+||+.|||+.+|++|......       +.++-++|+-+|+++.+...+
T Consensus       808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e  886 (975)
T KOG0520|consen  808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFE  886 (975)
T ss_pred             cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchh
Confidence            44578999999999999999999999 899999999999999999844332       346668899999988776554

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K

Probab=95.20  E-value=0.026  Score=35.21  Aligned_cols=19  Identities=37%  Similarity=0.508  Sum_probs=17.1

Q ss_pred             HHHHHHHHHhhhHHHHHHH
Q 013059          141 KALVKLQALVRGHIVRKQT  159 (450)
Q Consensus       141 r~ivrLQAlvRG~~vRrq~  159 (450)
                      +++|.||+.+||+++|++|
T Consensus         2 ~aai~iQ~~~R~~~~Rk~~   20 (21)
T PF00612_consen    2 KAAIIIQSYWRGYLARKRY   20 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            3689999999999999987

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]

Probab=94.96  E-value=0.087  Score=59.07  Aligned_cols=56  Identities=21%  Similarity=0.332  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcch
Q 013059          119 LAAVRIQCAFRGYLARRALKALK-ALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRTPTSE  185 (450)
Q Consensus       119 ~AAi~IQsafRGyLaRr~~~alr-~ivrLQAlvRG~~vRrq~~~tl~~~~a~v~iQs~vR~~~~R~~e  185 (450)
                      .-++.||++||||++|..|+.|| +++-|+ .+|.+.+|-          .+..||.++|+.+.++..
T Consensus       697 ~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~ks----------~v~el~~~~rg~k~~r~y  753 (1001)
T KOG0164|consen  697 SLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLKS----------YVQELQRRFRGAKQMRDY  753 (1001)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----------HHHHHHHHHHhhhhcccc
Confidence            45899999999999999999999 444445 456443332          334578888888766543

>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]

Probab=94.11  E-value=0.14  Score=60.85  Aligned_cols=71  Identities=32%  Similarity=0.479  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHHHHHH---HHH-HH-HHHHHHHHHHHhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHhccCcchh
Q 013059          116 QHELAAVRIQCAFRGYLA---RRA-LK-ALKALVKLQALVRGHIVRKQTADMLK----RMQTLVKVQARVRASRTPTSES  186 (450)
Q Consensus       116 ree~AAi~IQsafRGyLa---Rr~-~~-alr~ivrLQAlvRG~~vRrq~~~tl~----~~~a~v~iQs~vR~~~~R~~e~  186 (450)
                      +.....+.||.+||||+.   +.. +. .++-+|++|++.||+++|+.+...+.    ||.+.++||+.+|++..|..-.
T Consensus       563 ~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~  642 (1401)
T KOG2128|consen  563 KQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYK  642 (1401)
T ss_pred             hcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHH
Confidence            366788999999999994   111 12 23389999999999999999875544    6889999999999999887543

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues

Probab=92.10  E-value=0.15  Score=33.27  Aligned_cols=19  Identities=37%  Similarity=0.501  Sum_probs=17.4

Q ss_pred             HHHHHHHHHhhhHHHHHHH
Q 013059          141 KALVKLQALVRGHIVRKQT  159 (450)
Q Consensus       141 r~ivrLQAlvRG~~vRrq~  159 (450)
                      +.++.||+.+||+++|++|
T Consensus         4 ~aa~~IQa~~Rg~~~r~~y   22 (26)
T smart00015        4 RAAIIIQAAWRGYLARKRY   22 (26)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            4789999999999999997

Calmodulin-binding motif.

>COG5022 Myosin heavy chain [Cytoskeleton]

Probab=91.98  E-value=0.32  Score=58.25  Aligned_cols=42  Identities=36%  Similarity=0.477  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHH
Q 013059          116 QHELAAVRIQCAFRGYLARRALKA-LKALVKLQALVRGHIVRK  157 (450)
Q Consensus       116 ree~AAi~IQsafRGyLaRr~~~a-lr~ivrLQAlvRG~~vRr  157 (450)
                      .-...++.||++|||++.|++|.+ ++.+..+|.+.+|.++|+
T Consensus       743 ~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~  785 (1463)
T COG5022         743 KLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRR  785 (1463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhh
Confidence            345689999999999999988764 335555555555555554

>PTZ00014 myosin-A; Provisional

Probab=90.31  E-value=0.57  Score=54.01  Aligned_cols=39  Identities=21%  Similarity=0.295  Sum_probs=33.3

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 013059          142 ALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRTPT  183 (450)
Q Consensus       142 ~ivrLQAlvRG~~vRrq~~~tl~~~~a~v~iQs~vR~~~~R~  183 (450)
                      .++.||+.+||++.|++|...   .+++++||+.+|++..++
T Consensus       779 ~~~~iq~~~r~~~~r~~~~~~---~~~~~~iQ~~~R~~l~~~  817 (821)
T PTZ00014        779 LVSVLEALILKIKKKRKVRKN---IKSLVRIQAHLRRHLVIA  817 (821)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence            567889999999999999443   668999999999998764

>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.45  E-value=0.89  Score=52.39  Aligned_cols=28  Identities=32%  Similarity=0.463  Sum_probs=23.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013059          114 RWQHELAAVRIQCAFRGYLARRALKALK  141 (450)
Q Consensus       114 ~~ree~AAi~IQsafRGyLaRr~~~alr  141 (450)
                      .-++|.+|++||+.||||++|+..+.+-
T Consensus        25 ~rk~e~~av~vQs~~Rg~~~r~~~~~~~   52 (1001)
T KOG0942|consen   25 ERKQEKNAVKVQSFWRGFRVRHNQKLLF   52 (1001)
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            3477899999999999999999766543

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=83.27  E-value=0.84  Score=53.12  Aligned_cols=64  Identities=23%  Similarity=0.328  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---H--------HHHHHHHhhhHHHHHHHH----------------------HHHHH
Q 013059          119 LAAVRIQCAFRGYLARRALKALK---A--------LVKLQALVRGHIVRKQTA----------------------DMLKR  165 (450)
Q Consensus       119 ~AAi~IQsafRGyLaRr~~~alr---~--------ivrLQAlvRG~~vRrq~~----------------------~tl~~  165 (450)
                      .=+|+||+++|||-.|+.|+.|-   +        --++|+-+||+..|.-..                      ...+-
T Consensus       834 ~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~  913 (975)
T KOG0520|consen  834 QPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEERL  913 (975)
T ss_pred             CccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHHH
Confidence            45899999999999999998877   1        123477778887765321                      11112


Q ss_pred             HHHHHHHHHHHHHhccC
Q 013059          166 MQTLVKVQARVRASRTP  182 (450)
Q Consensus       166 ~~a~v~iQs~vR~~~~R  182 (450)
                      -+|+++||+.+|....+
T Consensus       914 ~~A~~~VQsm~rs~~a~  930 (975)
T KOG0520|consen  914 TRAVVRVQSMFRSPKAQ  930 (975)
T ss_pred             HHHHHHHHHHhcCHHHH
Confidence            35999999999998876

>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=82.55  E-value=1.2  Score=50.59  Aligned_cols=24  Identities=38%  Similarity=0.517  Sum_probs=21.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH
Q 013059          115 WQHELAAVRIQCAFRGYLARRALK  138 (450)
Q Consensus       115 ~ree~AAi~IQsafRGyLaRr~~~  138 (450)
                      .+++.||+.||..+|||++|+.++
T Consensus        27 rrr~~aa~~iq~~lrsyl~Rkk~~   50 (1096)
T KOG4427|consen   27 RRREAAALFIQRVLRSYLVRKKAQ   50 (1096)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            378999999999999999999876

>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]

Probab=80.36  E-value=3.2  Score=47.25  Aligned_cols=37  Identities=35%  Similarity=0.513  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHHHHHHH
Q 013059          120 AAVRIQCAFRGYLARRALKALK--ALVKLQALVRGHIVRKQTA  160 (450)
Q Consensus       120 AAi~IQsafRGyLaRr~~~alr--~ivrLQAlvRG~~vRrq~~  160 (450)
                      =|.+||.+||.|++||.|..||  +.-    |+-|...||++.
T Consensus       698 ~A~~IQkAWRrfv~rrky~k~ree~t~----ll~gKKeRRr~S  736 (1106)
T KOG0162|consen  698 MARRIQKAWRRFVARRKYEKMREEATK----LLLGKKERRRYS  736 (1106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcchHHHHHHH
Confidence            5899999999999999999999  333    345666676663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	450
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	2e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-05
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	1e-06
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	6e-06
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	4e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-04

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58

 Score = 49.1 bits (118), Expect = 2e-08
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 120 AAVRIQCAFRGYLARRALKALK-ALVKLQALVRGHIVRKQTADM 162
           A +RIQ   RG+L R+    ++ A + +Q  VRG+  R     +
Sbjct: 7   ACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFL 50

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 120 AAVRIQCAFRGYLARRA-LKALKALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRA 178
           A +RIQ   RG+L R+  ++  +A + +Q  VRGH  R   A  L+R +  + +Q   R 
Sbjct: 770 ACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCY-ATFLRRTRAAIIIQKFQRM 828

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 120 AAVRIQCAFRGYLARRALKALK---ALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARV 176
           AA+ IQ   RG+ AR     L+   A + +Q   R ++VRK+           + +QA +
Sbjct: 793 AAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKR---YQCMRDATIALQALL 849

Query: 177 RA 178
           R 
Sbjct: 850 RG 851

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 114 RWQHELAAVRIQCAFRGYLARRALKALK-ALVKLQALVRGHIVRKQTADMLKRMQTLVKV 172
             +   AA+ IQ   R Y+ R+  + ++ A + LQAL+RG++VR +   ML+  ++++ +
Sbjct: 812 FLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSII-I 870

Query: 173 QARVRA 178
           Q  VR 
Sbjct: 871 QKHVRG 876

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 9/64 (14%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 122 VRIQCAFRGYLARRA----LKALKALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVR 177
            R     +    ++A         ++  +Q+ +  H   K+T     + Q + +++A   
Sbjct: 765 KRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKP-PKGQEVSELEAIYN 823

Query: 178 ASRT 181
           + +T
Sbjct: 824 SLQT 827

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 3/64 (4%), Positives = 19/64 (29%), Gaps = 3/64 (4%)

Query: 120 AAVRIQCAFRGYLARRALKAL---KALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARV 176
           +   +Q     +   +  +     + + +L+A+      + +       +         +
Sbjct: 789 SIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEI 848

Query: 177 RASR 180
            ++ 
Sbjct: 849 DSTW 852

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 8/59 (13%)

Query: 120 AAVRIQCAFRGYLARRALKALK----ALVKLQALVRGHIVRKQTADMLKRMQTLVKVQA 174
                Q   RGYL R+A K L+     L  +Q  +R  +V +      +  +   KV+ 
Sbjct: 781 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN----WQWWKLYSKVKP 835

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 37/283 (13%), Positives = 87/283 (30%), Gaps = 57/283 (20%)

Query: 147 QALVRGHIVRKQTADMLKRMQTLVKVQARVRASRTPTSESLLSSSKSSLS----RSTRCG 202
           Q   + ++ R Q    L++    ++    V        + +L S K+ ++     S +  
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNV------LIDGVLGSGKTWVALDVCLSYKVQ 177

Query: 203 SSSNFGDITDLDKGRLGSNWLDRWMEESVWNGHRVSQLKSGPPADDEKSDKILEVDTWKP 262
              +F  I  L+     S      M + +   +++    +     D  S+  L + + + 
Sbjct: 178 CKMDFK-IFWLNLKNCNSPETVLEMLQKLL--YQIDP--NWTSRSDHSSNIKLRIHSIQA 232

Query: 263 HLN----PRQHNRV------IRSSPHGSALDYN--------NHSYMTIDSPSKLSVKNMN 304
            L      + +         ++++   +A + +                S +  +  +++
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 305 PI-PSVSPGEVLSLSSLKVPVGKSDAALRTADNSPQVSS---ASYRPGSSARRGPFTPTR 360
               +++P EV SL    +     D        +P+  S    S R G            
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG---------LAT 343

Query: 361 SEYSWGYFSGCIGHPNYMANTESSRAKVRSLSAPRQRLELERY 403
               W  +     H N    T    + +  L     R   + +
Sbjct: 344 ----WDNWK----HVNCDKLTTIIESSLNVLEPAEYR---KMF 375

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 9/72 (12%), Positives = 26/72 (36%), Gaps = 11/72 (15%)

Query: 120 AAVRIQCAFRGYLARRALKALKALVK----------LQALVRGHIVRKQTADMLKRMQTL 169
              +     R     + +   +A ++          +Q+ +  H   K+T     + Q +
Sbjct: 765 EQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKP-PKGQEV 823

Query: 170 VKVQARVRASRT 181
            +++A   + +T
Sbjct: 824 SELEAIYNSLQT 835

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.8 bits (106), Expect = 5e-05
 Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 8/66 (12%)

Query: 120 AAVRIQCAFRGYLARRALKALK----ALVKLQALVRGHIVRKQTADMLKRMQTLVKVQAR 175
             +  Q   RGYLAR+A    +    ++  +Q  VR  +           M     +   
Sbjct: 794 VIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW----PWMXLFFXIXPL 849

Query: 176 VRASRT 181
           ++ +R 
Sbjct: 850 LKVTRQ 855

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 13/45 (28%), Positives = 25/45 (55%)

Query: 134 RRALKALKALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRA 178
            R LK    ++  QA  RG++ RK  A   ++++++  +Q  VR+
Sbjct: 786 ERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRS 830

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	450
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	99.15
1n2d_C	48	IQ2 and IQ3 motifs from MYO2P, A class V myosin; p	98.91
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	98.72
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	98.69
1n2d_C	48	IQ2 and IQ3 motifs from MYO2P, A class V myosin; p	97.99
2l53_B	31	CAM, voltage-gated sodium channel type V alpha iso	97.74
2kxw_B	27	Sodium channel protein type 2 subunit alpha; actio	97.72
1wdc_A	64	Scallop myosin; calcium binding protein, muscle pr	97.44
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	97.38
2bl0_A	63	Major plasmodial myosin heavy chain; muscle protei	97.31
2bl0_A	63	Major plasmodial myosin heavy chain; muscle protei	97.26
1wdc_A	64	Scallop myosin; calcium binding protein, muscle pr	97.24
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	97.04
3gn4_A	148	Myosin-VI; unconventional myosin, motility, lever	96.11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	96.1
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	95.37
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	93.62
4dck_A	168	Sodium channel protein type 5 subunit alpha; IQ-mo	91.99
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	90.03
4anj_A	1052	Unconventional myosin-VI, green fluorescent prote;	89.02

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}

Probab=99.15  E-value=7.9e-11  Score=89.79  Aligned_cols=50  Identities=28%  Similarity=0.406  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHH
Q 013059          116 QHELAAVRIQCAFRGYLARRALKALK-ALVKLQALVRGHIVRKQTADMLKR  165 (450)
Q Consensus       116 ree~AAi~IQsafRGyLaRr~~~alr-~ivrLQAlvRG~~vRrq~~~tl~~  165 (450)
                      +.+.|||+||+.||||++|+.|..++ ++|.||+.+||+++|+.+......
T Consensus         3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r~~   53 (58)
T 2ix7_C            3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRRT   53 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57889999999999999999999999 999999999999999999655443

>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}

Probab=98.91  E-value=2.4e-09  Score=78.42  Aligned_cols=42  Identities=26%  Similarity=0.389  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHH
Q 013059          118 ELAAVRIQCAFRGYLARRALKALK---ALVKLQALVRGHIVRKQT  159 (450)
Q Consensus       118 e~AAi~IQsafRGyLaRr~~~alr---~ivrLQAlvRG~~vRrq~  159 (450)
                      ..|||.||+.|||||+|+.|..++   ++|.||+.+||+++|+.|
T Consensus         3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y   47 (48)
T 1n2d_C            3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV   47 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence            358999999999999999999887   899999999999999986

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=98.72  E-value=1.6e-08  Score=115.63  Aligned_cols=71  Identities=31%  Similarity=0.370  Sum_probs=61.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcch
Q 013059          114 RWQHELAAVRIQCAFRGYLARRALKALK-ALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRTPTSE  185 (450)
Q Consensus       114 ~~ree~AAi~IQsafRGyLaRr~~~alr-~ivrLQAlvRG~~vRrq~~~tl~~~~a~v~iQs~vR~~~~R~~e  185 (450)
                      .++++.||++||++||||++|+.|..++ ++|.||+.+||+++|+.+.... ...+++.||+.+|++.+|+..
T Consensus       812 ~lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~lr-~~~aav~IQ~~~Rg~l~R~~y  883 (1080)
T 2dfs_A          812 FLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMML-REHKSIIIQKHVRGWLARVHY  883 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTTHHHHHT
T ss_pred             ccccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            3567899999999999999999999999 9999999999999999986544 445888899999998877643

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=98.69  E-value=2.7e-08  Score=113.82  Aligned_cols=66  Identities=29%  Similarity=0.416  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 013059          118 ELAAVRIQCAFRGYLARRALKALK-ALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRTPTS  184 (450)
Q Consensus       118 e~AAi~IQsafRGyLaRr~~~alr-~ivrLQAlvRG~~vRrq~~~tl~~~~a~v~iQs~vR~~~~R~~  184 (450)
                      ..||++||++||||++|+.|+.++ +++.||+.+||+++|+++.. ++...|+++||+.||++.+|+.
T Consensus       768 ~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~-lr~~~AAi~IQs~~Rg~~~Rk~  834 (1080)
T 2dfs_A          768 RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATF-LRRTRAAIIIQKFQRMYVVRKR  834 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccc-cccchhHHHHHHHHhhHHHHHH
Confidence            579999999999999999999998 99999999999999999854 4566788888888888887754

>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}

Probab=97.99  E-value=5.9e-06  Score=60.19  Aligned_cols=41  Identities=24%  Similarity=0.346  Sum_probs=35.6

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 013059          142 ALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRTPT  183 (450)
Q Consensus       142 ~ivrLQAlvRG~~vRrq~~~tl~~~~a~v~iQs~vR~~~~R~  183 (450)
                      ++|.||+.+||+++|+.+.. ++...++++||+.+||+.+|.
T Consensus         5 a~i~iQ~~~Rg~l~R~~~~~-~~~~~aai~IQ~~~Rg~~~Rk   45 (48)
T 1n2d_C            5 AIKYLQNNIKGFIIRQRVND-EMKVNCATLLQAAYRGHSIRA   45 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHH
Confidence            78999999999999999954 445569999999999998764

>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}

Probab=97.74  E-value=2e-05  Score=53.39  Aligned_cols=23  Identities=43%  Similarity=0.502  Sum_probs=20.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Q 013059          115 WQHELAAVRIQCAFRGYLARRAL  137 (450)
Q Consensus       115 ~ree~AAi~IQsafRGyLaRr~~  137 (450)
                      .+||.+|++||.+||+||.|+.+
T Consensus         3 k~Ee~aA~vIQrA~R~yl~rr~~   25 (31)
T 2l53_B            3 GSEEVSAMVIQRAFRRHLLQRSL   25 (31)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhh
Confidence            37999999999999999999864

>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}

Probab=97.72  E-value=1.6e-05  Score=52.33  Aligned_cols=22  Identities=41%  Similarity=0.602  Sum_probs=19.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Q 013059          115 WQHELAAVRIQCAFRGYLARRA  136 (450)
Q Consensus       115 ~ree~AAi~IQsafRGyLaRr~  136 (450)
                      .+||.||++||.+||+||.++.
T Consensus         3 k~Ee~aA~vIQrA~R~yl~~~~   24 (27)
T 2kxw_B            3 KQEEVSAIVIQRAYRRYLLKQK   24 (27)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            3799999999999999999864

>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A

Probab=97.44  E-value=0.00028  Score=54.51  Aligned_cols=41  Identities=32%  Similarity=0.453  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHH
Q 013059          118 ELAAVRIQCAFRGYLARRALKALK----ALVKLQALVRGHIVRKQ  158 (450)
Q Consensus       118 e~AAi~IQsafRGyLaRr~~~alr----~ivrLQAlvRG~~vRrq  158 (450)
                      ...++.||+..||||+|+.|..+.    ++..||.-+|+++.++.
T Consensus         6 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~   50 (64)
T 1wdc_A            6 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN   50 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            345666777777777777666653    55566666666666553

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}

Probab=97.38  E-value=0.00017  Score=54.50  Aligned_cols=41  Identities=27%  Similarity=0.391  Sum_probs=35.4

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 013059          141 KALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRTPTS  184 (450)
Q Consensus       141 r~ivrLQAlvRG~~vRrq~~~tl~~~~a~v~iQs~vR~~~~R~~  184 (450)
                      .++|.||+.+||+++|+.|..+   ..+++.||+.+||+.+|..
T Consensus         6 ~aai~IQ~~~Rg~~~Rk~~~~~---r~aai~IQ~~~Rg~~aR~~   46 (58)
T 2ix7_C            6 AACIRIQKTIRGWLLRKRYLCM---QRAAITVQRYVRGYQARCY   46 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            3789999999999999999543   3589999999999998764

>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=97.31  E-value=0.00032  Score=54.08  Aligned_cols=39  Identities=23%  Similarity=0.251  Sum_probs=18.7

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013059          143 LVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRT  181 (450)
Q Consensus       143 ivrLQAlvRG~~vRrq~~~tl~~~~a~v~iQs~vR~~~~  181 (450)
                      ++.||+.+||+++|+.+...+...+|+..||..+|++..
T Consensus         7 ~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~   45 (63)
T 2bl0_A            7 VKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLE   45 (63)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444444444444444444444454455555555443

>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=97.26  E-value=0.00028  Score=54.35  Aligned_cols=42  Identities=19%  Similarity=0.243  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHH
Q 013059          118 ELAAVRIQCAFRGYLARRALKALK----ALVKLQALVRGHIVRKQT  159 (450)
Q Consensus       118 e~AAi~IQsafRGyLaRr~~~alr----~ivrLQAlvRG~~vRrq~  159 (450)
                      ...++.||+..||||+|+.|..+.    ++..||.-+|+++.++..
T Consensus         4 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w   49 (63)
T 2bl0_A            4 GEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNW   49 (63)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            456899999999999999999984    788999999999998753

>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A

Probab=97.24  E-value=0.00034  Score=54.04  Aligned_cols=42  Identities=21%  Similarity=0.267  Sum_probs=38.7

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 013059          142 ALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRTPT  183 (450)
Q Consensus       142 ~ivrLQAlvRG~~vRrq~~~tl~~~~a~v~iQs~vR~~~~R~  183 (450)
                      .++.||+.+||+++|+.+...+...+|+..||..+|++..++
T Consensus         8 i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~   49 (64)
T 1wdc_A            8 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR   49 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            689999999999999999999999999999999999988654

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=97.04  E-value=0.00072  Score=75.72  Aligned_cols=42  Identities=31%  Similarity=0.415  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHH
Q 013059          118 ELAAVRIQCAFRGYLARRALKALK----ALVKLQALVRGHIVRKQT  159 (450)
Q Consensus       118 e~AAi~IQsafRGyLaRr~~~alr----~ivrLQAlvRG~~vRrq~  159 (450)
                      ..+|+.||++|||||+|+.|+.++    +++.||..+||+++||.+
T Consensus       779 ~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~  824 (837)
T 1kk8_A          779 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW  824 (837)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence            357899999999999999999883    889999999999999875

>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}

Probab=96.11  E-value=0.0064  Score=54.84  Aligned_cols=35  Identities=29%  Similarity=0.422  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Q 013059          116 QHELAAVRIQCAFRGYLARRALK-ALKALVKLQALV  150 (450)
Q Consensus       116 ree~AAi~IQsafRGyLaRr~~~-alr~ivrLQAlv  150 (450)
                      =+..|+|+||+++||||+|+.++ .+.|++++.+|.
T Consensus        43 yR~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~   78 (148)
T 3gn4_A           43 YRAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK   78 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            46788999999999999999987 556888887764

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=96.10  E-value=0.0053  Score=70.87  Aligned_cols=40  Identities=28%  Similarity=0.380  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHH
Q 013059          119 LAAVRIQCAFRGYLARRALKALK----ALVKLQALVRGHIVRKQ  158 (450)
Q Consensus       119 ~AAi~IQsafRGyLaRr~~~alr----~ivrLQAlvRG~~vRrq  158 (450)
                      .+++.||+.|||||+|+.|..++    +++.||..+||++.|+.
T Consensus       793 ~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~  836 (1184)
T 1i84_S          793 DVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXH  836 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            57899999999999999999885    89999999999999865

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=95.37  E-value=0.022  Score=63.90  Aligned_cols=42  Identities=21%  Similarity=0.267  Sum_probs=38.0

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 013059          142 ALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRTPT  183 (450)
Q Consensus       142 ~ivrLQAlvRG~~vRrq~~~tl~~~~a~v~iQs~vR~~~~R~  183 (450)
                      .++.||+.+||++.|++|...+....|++.||+.+|++..++
T Consensus       781 ~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r  822 (837)
T 1kk8_A          781 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR  822 (837)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            688999999999999999888777889999999999988764

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=93.62  E-value=0.087  Score=60.89  Aligned_cols=53  Identities=21%  Similarity=0.262  Sum_probs=42.4

Q ss_pred             HHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 013059          132 LARRALKALK-ALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRTPTS  184 (450)
Q Consensus       132 LaRr~~~alr-~ivrLQAlvRG~~vRrq~~~tl~~~~a~v~iQs~vR~~~~R~~  184 (450)
                      |....-..|. .++.||+.+||++.|+.|...++...+++.||+.+|++..++.
T Consensus       783 LE~~r~~~l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~  836 (1184)
T 1i84_S          783 LEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXH  836 (1184)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4433333333 6889999999999999998888888899999999999987653

>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A

Probab=91.99  E-value=0.12  Score=47.37  Aligned_cols=27  Identities=44%  Similarity=0.510  Sum_probs=23.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013059          113 VRWQHELAAVRIQCAFRGYLARRALKA  139 (450)
Q Consensus       113 ~~~ree~AAi~IQsafRGyLaRr~~~a  139 (450)
                      ...+++.||++||.+||.|+.|+.++.
T Consensus       125 ~~~~e~~aA~~IQra~R~~~~r~~~~~  151 (168)
T 4dck_A          125 RRKHEEVSAMVIQRAFRRHLLQRSLKH  151 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            446789999999999999999887655

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A

Probab=90.03  E-value=0.22  Score=55.61  Aligned_cols=24  Identities=33%  Similarity=0.620  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 013059          118 ELAAVRIQCAFRGYLARRALKALK  141 (450)
Q Consensus       118 e~AAi~IQsafRGyLaRr~~~alr  141 (450)
                      ..+|+.||++|||||+|+.|+.+|
T Consensus       768 ~~~~~~iQ~~~Rg~l~R~~~~~~r  791 (795)
T 1w7j_A          768 RAACIRIQKTIRGWLMRKKYMRMR  791 (795)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            358999999999999999999988

>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}

Probab=89.02  E-value=0.6  Score=53.60  Aligned_cols=41  Identities=12%  Similarity=0.096  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHH
Q 013059          118 ELAAVRIQCAFRGYLARRALKALK-ALVKLQALVRGHIVRKQT  159 (450)
Q Consensus       118 e~AAi~IQsafRGyLaRr~~~alr-~ivrLQAlvRG~~vRrq~  159 (450)
                      ..+|+.||. +||||+|+.|+.++ +.+.+|.+.|+...|+..
T Consensus       775 ~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~  816 (1052)
T 4anj_A          775 DHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEA  816 (1052)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            456777775 79999999999999 888888888887766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	450
d2mysa2	794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	4e-08
d2mysa2	794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	3e-04
d2mysa2	794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	3e-04
d1kk8a2	789	c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain	5e-07
d1kk8a2	789	c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain	0.004
d1uzba_	516	c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogen	0.004

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 53.2 bits (127), Expect = 4e-08
 Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 120 AAVRIQCAFRGYLARRALKAL----KALVKLQALVRGHIVRKQTADMLKRMQTLVKVQAR 175
                Q   RG+L R   +A+    +++  +Q  VR  +  K        M+   K++  
Sbjct: 737 IITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKH----WPWMKLFFKIKPL 792

Query: 176 VR 177
           ++
Sbjct: 793 LK 794

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 40.9 bits (95), Expect = 3e-04
 Identities = 12/46 (26%), Positives = 24/46 (52%)

Query: 133 ARRALKALKALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRA 178
             R  K  + +   QA  RG ++R +   M++R +++  +Q  VR+
Sbjct: 728 EMRDDKLAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRS 773

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 40.9 bits (95), Expect = 3e-04
 Identities = 6/38 (15%), Positives = 16/38 (42%)

Query: 114 RWQHELAAVRIQCAFRGYLARRALKALKALVKLQALVR 151
             +   +   IQ   R ++  +    +K   K++ L++
Sbjct: 757 MVERRESIFCIQYNVRSFMNVKHWPWMKLFFKIKPLLK 794

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score = 49.7 bits (118), Expect = 5e-07
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 8/57 (14%)

Query: 120 AAVRIQCAFRGYLARRALKALK----ALVKLQALVRGHIVRKQTADMLKRMQTLVKV 172
                Q   RGYL R+A K L+     L  +Q  +R  +V +      +  +   KV
Sbjct: 733 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN----WQWWKLYSKV 785

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score = 37.4 bits (86), Expect = 0.004
 Identities = 11/46 (23%), Positives = 21/46 (45%)

Query: 133 ARRALKALKALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRA 178
             R  +  K +   QA +RG+++RK    +  +   L  +Q  +R 
Sbjct: 724 EMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRK 769

>d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 516

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: 1-pyrroline-5-carboxylate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 37.2 bits (85), Expect = 0.004
 Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 64  ANKHAIA-VAAATAAVAEAALAAAHAAAEVVRLTSTGGRGAGVAAPPGAHVRWQHELAAV 122
           A    +   A A  A AEAAL AA  A +  +      R   +        R + EL A 
Sbjct: 60  APSEVVGTTAKAGKAEAEAALEAAWKAFKTWKDWPQEDRSRLLLKAAALMRRRKRELEAT 119

Query: 123 RIQ 125
            + 
Sbjct: 120 LVY 122

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	450
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	97.44
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	97.42
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	96.1
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	95.01
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	92.22

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=97.44  E-value=6.4e-05  Score=81.01  Aligned_cols=42  Identities=24%  Similarity=0.271  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHH
Q 013059          118 ELAAVRIQCAFRGYLARRALKALK----ALVKLQALVRGHIVRKQT  159 (450)
Q Consensus       118 e~AAi~IQsafRGyLaRr~~~alr----~ivrLQAlvRG~~vRrq~  159 (450)
                      ..+|+.||+.||||++|+.|+.++    +++.||+.+||+++||.+
T Consensus       735 ~~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~~  780 (794)
T d2mysa2         735 AEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHW  780 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            468999999999999999998873    899999999999999886

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=97.42  E-value=5.6e-05  Score=81.41  Aligned_cols=43  Identities=30%  Similarity=0.404  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHH
Q 013059          118 ELAAVRIQCAFRGYLARRALKALK----ALVKLQALVRGHIVRKQTA  160 (450)
Q Consensus       118 e~AAi~IQsafRGyLaRr~~~alr----~ivrLQAlvRG~~vRrq~~  160 (450)
                      ..+|+.||+.||||++||.|+.+|    +++.||..+||+++||.+.
T Consensus       731 ~~~~~~IQ~~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~~~rr~~~  777 (789)
T d1kk8a2         731 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ  777 (789)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence            568999999999999999999998    7889999999999999863

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=96.10  E-value=0.0039  Score=66.78  Aligned_cols=53  Identities=23%  Similarity=0.275  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 013059          131 YLARRALKALK-ALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRTPT  183 (450)
Q Consensus       131 yLaRr~~~alr-~ivrLQAlvRG~~vRrq~~~tl~~~~a~v~iQs~vR~~~~R~  183 (450)
                      +|..+.-..+. .++.||+.+||+++|++|...+....|++.||+.+|++..|+
T Consensus       725 ~LE~~r~~~l~~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r  778 (794)
T d2mysa2         725 LLEEMRDDKLAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVK  778 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44444434444 788999999999999999888887889999999999998764

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=95.01  E-value=0.015  Score=62.13  Aligned_cols=43  Identities=21%  Similarity=0.268  Sum_probs=37.2

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 013059          142 ALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRTPTS  184 (450)
Q Consensus       142 ~ivrLQAlvRG~~vRrq~~~tl~~~~a~v~iQs~vR~~~~R~~  184 (450)
                      .++.||+.+||+++|++|........+++.||+.+|++.+|+.
T Consensus       733 ~~~~IQ~~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~~~rr~  775 (789)
T d1kk8a2         733 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN  775 (789)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            6788999999999999997766666689999999999987753

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=92.22  E-value=0.046  Score=57.52  Aligned_cols=25  Identities=32%  Similarity=0.570  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013059          117 HELAAVRIQCAFRGYLARRALKALK  141 (450)
Q Consensus       117 ee~AAi~IQsafRGyLaRr~~~alr  141 (450)
                      ...+||+||+.|||||+||.|..+|
T Consensus       705 l~~~~~~iQ~~~R~~l~Rk~~~r~r  729 (730)
T d1w7ja2         705 LRAACIRIQKTIRGWLMRKKYMRMR  729 (730)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3457899999999999999988775