Citrus Sinensis ID: 013071

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450
Protein Sequence
MKLVLASFLKFTLMVMNHTSVHKLNIKLQLEIDIAGLDQSKLKECSGESNAFIKQIQIAPKPASNKYVVEVEDSCNRKPDAKLDETTGQNQNTKTSLVNKSVVVDDKLDSDSVRSMFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNVEGHLIRSESQRAISVLTTSSQGLQGHLRLDSSADFGDVSHPVSDSGGSQGKAPSTSSSTPRAPKSPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKIPSKREVGEVKPDVDMEGSPELQLTLGPSVGI
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHcccccccccEEEEEEEEEcccccccHHHHHccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHcccccccccEEEEEEEccHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccHHHHHHHccccccccccccccccEEEEccccccccccccccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccEEEEEEcccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEHccccHHHHHHHHHHHcEEEEEEEEEcccccccEEEEEccccccccccEEEcccccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHHHHccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHccccccccEEEEEccccHcHHHHHHHcccccccccccccccccEEEEccccccccccccccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccEEEEEcccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHcccccccccccccccccc
Coil and Loop (DISEMBL)
MKLVLASFLKFTLMVMNHTSVHKLNIKLQLEIDIagldqsklkecsgesNAFIKQIQiapkpasnkyvvevedscnrkpdakldettgqnqntktslVNKSvvvddkldsdsVRSMFlmgmspssgvdildvqrcsSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGlghcgasttkstygIGVHLaaascpdtsasytdvdengvRHMVLCRVImgnmeplfpgtkqfhpssedfdsgvddlqnprhYIVWNMNMNTHIFPEFVVSFKfssnveghlirsESQRAISVLTtssqglqghlrldssadfgdvshpvsdsggsqgkapstssstprapkspwmpfpmlfASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQckipskrevgevkpdvdmegspelqltlgpsvgi
Flexible Loop (DISEMBL)
MKLVLASFLKFTLMVMNHTSVHKLNIKLQLEIDIAGLDQSKLKECSGESNAFIKQIqiapkpasnkYVVEVEDSCNRkpdakldettgqnqntktslvnksvvvddKLDSDSVRSMFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTsasytdvdenGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNVEGHLIRSESQRAISVLTTSSQGLQGHLRLDSSADFGDVSHPvsdsggsqgkapstssstprapkspWMPFPMLFASISNKVSPKVMEQISNQYELfrakkvnrddfVKKLRlivgddllrstitalqckipskrevgevkpdvdmegspelqltlgpsvgi
Low Complexity Region (SEG)
MKLVLASFLKFTLMVMNHTSVHKLNIKLQLEIDIAGLDQSKLKECSGESNAFIKQIQIAPKPASNKYVVEVEDSCNRKPDAKLDETTGQNQNTKTslvnksvvvddkldsdsvRSMFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNVEGHLIRSESQRAISVLTTSSQGLQGHLRLDSSADFGDVSHPVSDSGGSQGkapstssstprapkspWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKIPSKREVGEVKPDVDMEGSPELQLTLGPSVGI
Disordered region (IsUnstruct)
**LVLASFLKFTLMVMNHTSVHKLNIKLQLEIDIAGLDQSKLKECSGESNAFIKQIQIA*******YV*************************************************L*******GVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFP******************LQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNVEGHLIR**************************************************************PFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKI*******************************
Disordered Region (DISOPRED)
**LVLASFLKFTLMVMNHTSVHKLNIKLQLEIDIA***************************************************************************DSVRSMFLMGMSPSSGVDILDVQRCSSASLLARFELF**************NVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGN*****************FDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNVEGHLI*******************************************************************LFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTIT******************************LGP**G*
Disordered Region (DISEMBL)
MKLVLASFLKFTLMVMNHTSVHKLNIKLQLEIDIAGLDQSKLKECSGESNAFIKQIQIAPKPASNKYVVEVEDSCNRKPDAKLDETTGQNQNTKTSLVNKSVVVDDKLDSDSVRSMFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNVEGHLIRSESQRAISVLTTSSQGLQGHLRLDSSADFGDVS************************KSPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKIPSKREVGEVKPDVDMEGSPELQLTLGPSVGI
Disordered Region (DISPRO)
MKLVLASFLKFTLMVMNHTSVHKLNIKLQLEIDIAGLDQSKLKECSGESNAFIKQ*Q***************************E*TGQNQNTKTSLVNKSVVVDDKLDSDSVRSMFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTK****SSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNVEGHLIRSE*Q*AI**************************************************KSPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKIPS*****************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLVLASFLKFTLMVMNHTSVHKLNIKLQLEIDIAGLDQSKLKECSGESNAFIKQIQIAPKPASNKYVVEVEDSCNRKPDAKLDETTGQNQNTKTSLVNKSVVVDDKLDSDSVRSMFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNVEGHLIRSESQRAISVLTTSSQGLQGHLRLDSSADFGDVSHPVSDSGGSQGKAPSTSSSTPRAPKSPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKIPSKREVGEVKPDVDMEGSPELQLTLGPSVGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	450	2.2.26 [Sep-21-2011]
Q8RY59	589	Inactive poly [ADP-ribose	yes	no	0.851	0.650	0.474	8e-93
O82289	568	Probable inactive poly [A	no	no	0.824	0.653	0.439	1e-76
Q9ZUD9	323	Probable inactive poly [A	no	no	0.551	0.767	0.333	3e-39
O64592	305	Probable inactive poly [A	no	no	0.542	0.8	0.300	3e-35
Q9FJJ3	309	Probable inactive poly [A	no	no	0.5	0.728	0.285	3e-28
Q9STU1	316	Probable inactive poly [A	no	no	0.253	0.360	0.354	6e-15
Q460N3	656	Poly [ADP-ribose] polymer	yes	no	0.342	0.234	0.225	7e-08
Q2EMV9	1817	Poly [ADP-ribose] polymer	yes	no	0.333	0.082	0.216	1e-07
Q54YW4	337	Probable poly [ADP-ribose	yes	no	0.326	0.436	0.226	0.0002
Q460N5	1801	Poly [ADP-ribose] polymer	no	no	0.335	0.083	0.192	0.0004

>sp|Q8RY59|RCD1_ARATH Inactive poly [ADP-ribose] polymerase RCD1 OS=Arabidopsis thaliana GN=RCD1 PE=1 SV=1

 Score =  341 bits (874), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 196/413 (47%), Positives = 253/413 (61%), Gaps = 30/413 (7%)

Query: 25  NIKLQLEIDIAGLDQSKL--KECSGES-NAFIKQIQIAPKPASNKYVVEVEDSCNRKPDA 81
           +IKL+LEID+ G +  +L  +ECS ES +  +  + +A + ++  Y    EDSC+RK +A
Sbjct: 190 DIKLRLEIDVNGGETPRLNLEECSDESGDNMMDDVPLAQRSSNEHYDEATEDSCSRKLEA 249

Query: 82  ---KLDETTGQNQNTKTSLVNKSVVVDDKLDSDSVRSMFLMGMSPSSGVDILDVQRCSSA 138
              K DET          +    +   + LD D+V+ MF +G +    V +LDV R SS 
Sbjct: 250 AVSKWDETDA------IVVSGAKLTGSEVLDKDAVKKMFAVGTASLGHVPVLDVGRFSSE 303

Query: 139 SLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIG 198
              AR  LFQKQ+EIT K RGDANVRYAWL   +  LS ++M GLG  GA   KS YG+G
Sbjct: 304 IAEARLALFQKQVEITKKHRGDANVRYAWLPAKREVLSAVMMQGLGVGGAFIRKSIYGVG 363

Query: 199 VHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDL 258
           +HL AA CP  SA Y DVDENGVR+MVLCRVIMGNME L     QF    E++D+GVDD+
Sbjct: 364 IHLTAADCPYFSARYCDVDENGVRYMVLCRVIMGNMELLRGDKAQFFSGGEEYDNGVDDI 423

Query: 259 QNPRHYIVWNMNMNTHIFPEFVVSFKFSS--NVEGHLIRSESQRAISVLTTSSQGLQGHL 316
           ++P++YIVWN+NMNTHIFPEFVV FK S+  N EG+LI       ++             
Sbjct: 424 ESPKNYIVWNINMNTHIFPEFVVRFKLSNLPNAEGNLIAKRDNSGVT------------- 470

Query: 317 RLDSSADFGDVSHPVSDSGGSQGKAPSTSSSTPRAPKSPWMPFPMLFASISNKVSPKVME 376
            L+   D          + GS G A S  SST R PKSPWMPFP LFA+IS+KV+   M 
Sbjct: 471 -LEGPKDLPPQLESNQGARGS-GSANSVGSSTTR-PKSPWMPFPTLFAAISHKVAENDML 527

Query: 377 QISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKIPSKREVGEVK 429
            I+  Y+  R KK+ R +FV+KLR+IVGDDLLRSTIT LQ +  SK   G ++
Sbjct: 528 LINADYQQLRDKKMTRAEFVRKLRVIVGDDLLRSTITTLQNQPKSKEIPGSIR 580

Inactive ADP-ribosyltransferase that functions with SRO1 to regulates oxidative stress, hormonal and developmental responses. Required for embryogenesis, vegetative and reproductive development, and abiotic stress responses. May regulates several stress-responsive genes. Seems to have has a larger developmental role than SRO1. Does not bind NAD in vitro.
Arabidopsis thaliana (taxid: 3702)

>sp|O82289|SRO1_ARATH Probable inactive poly [ADP-ribose] polymerase SRO1 OS=Arabidopsis thaliana GN=SRO1 PE=1 SV=2

 Score =  287 bits (734), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 174/396 (43%), Positives = 240/396 (60%), Gaps = 25/396 (6%)

Query: 26  IKLQLEIDI--AGLDQSKLKECSGESNAFIKQIQIAPKPASNKYVVEVEDSCNRKPDAKL 83
           IKL +EID+    L +  L   + ES   +   Q   + ++       EDSC+R+    L
Sbjct: 189 IKLHIEIDVNSGELPRLNLNVVTDESGDNMDDFQAVQRSSNGPNDEASEDSCSRE----L 244

Query: 84  DETTGQNQNTKTSLVNKSVVVDDKLDSDSVRSMFLMGMSPSSGVDILDVQRCSSASLLAR 143
           D+   +   T+T   +     +++LD D+V+ MF +G +    V+ LDV + SS    AR
Sbjct: 245 DDAVEKWDKTETDRFSGVKPAEEELDKDAVKQMFALGAATLGHVESLDVYQFSSEIAKAR 304

Query: 144 FELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAA 203
             LFQKQ +IT K RGDAN+RYAW+   K  LS ++M+GLG  GA   KS YG+GVH  A
Sbjct: 305 LSLFQKQADITKKHRGDANIRYAWVPAKKEVLSAVMMHGLGVGGAFIKKSMYGVGVH--A 362

Query: 204 ASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRH 263
           A+CP  SA Y D+D+NGVRHMVLCRVIMGNMEPL     Q+    E++D+GVDD+++P+H
Sbjct: 363 ANCPYFSARYCDIDDNGVRHMVLCRVIMGNMEPLRGDNTQYFTGGEEYDNGVDDVESPKH 422

Query: 264 YIVWNMNMNTHIFPEFVVSFKFS-SNVEGHLI-RSESQRAISVLTTSSQGLQGHLRLDSS 321
           Y++WNMNMNTHI+PEFVVSFK S  N EG+++  ++S+   S LT   +G +G      S
Sbjct: 423 YLIWNMNMNTHIYPEFVVSFKLSIPNAEGNILPTTQSRHESSGLTL--EGPKG----SPS 476

Query: 322 ADFGDVSHPVSDSGGSQGKAPSTSSSTPRAPKSPWMPFPMLFASISNKVSPKVMEQISNQ 381
            + G VS+  S S  +   +    S          MPFP+LF +IS+K++ K M+ I   
Sbjct: 477 NEPGRVSNGGSGSEKNSSSSRRPRSPI--------MPFPLLFKAISSKIARKDMDLIIAG 528

Query: 382 YELFRAKKVNRDDFVKKLRLIVG-DDLLRSTITALQ 416
           Y+  R KKV+R +F K L +IVG DDLL STIT LQ
Sbjct: 529 YQELREKKVSRKEFYKTLSMIVGDDDLLISTITGLQ 564

Probable inactive ADP-ribosyltransferase that functions with RCD1 to regulates oxidative stress, hormonal and developmental responses. May regulates some stress-responsive genes. Seems to have has a smaller developmental role than R.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUD9|SRO2_ARATH Probable inactive poly [ADP-ribose] polymerase SRO2 OS=Arabidopsis thaliana GN=SRO2 PE=1 SV=1

 Score =  163 bits (412), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/315 (33%), Positives = 155/315 (49%), Gaps = 67/315 (21%)

Query: 109 DSDSVRSMFLMGMSP-SSGVDILDVQRCSS-------ASLLARFELFQKQLEITNKCRGD 160
           + D +++  L GM   SS   I+ + + SS       A  LA F +F     +  K  GD
Sbjct: 54  EHDVIKTCLLSGMGVVSSDTTIVTISKNSSERGITTRAKFLA-FRIFTDA--VARKHGGD 110

Query: 161 ANVRYAWLATSKGALSTMIMYGLGHCGASTTKS---TYGIGVHLAAASCPDTSASYTDVD 217
           ANV+Y W A S+  +  +I YG  +      ++   ++GIG+HL  + C   +AS T+ D
Sbjct: 111 ANVKYGWYAGSRDEIQRIISYGFSNRDVGKFENDGGSHGIGIHLVPSKCSLLAASATEQD 170

Query: 218 ENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFP 277
           E G+R+++LCRVI+G  E +  G+KQ +PSS +FDSGVDDL NPR+Y++W+ NMN+ I P
Sbjct: 171 EEGLRYLLLCRVILGKPEIIISGSKQSYPSSAEFDSGVDDLHNPRNYVIWSCNMNSCILP 230

Query: 278 EFVVSFKFSSNVEGHLIRSESQRAISVLTTSSQGLQGHLRLDSSADFGDVSHPVSDSGGS 337
            ++VSF           RS   R        S+G             G  S P S     
Sbjct: 231 SYIVSF-----------RSPRLRV-------SRG-------------GFASRPSS----- 254

Query: 338 QGKAPSTSSSTPRAPKSPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVK 397
                            PW+ F  L + +S  + P  M  I   Y+ FR +K+ RD  V+
Sbjct: 255 -----------------PWVSFASLMSMLSTSMDPSRMNLIIRTYDDFRKRKIRRDQLVR 297

Query: 398 KLRLIVGDDLLRSTI 412
           K+R + GD+LL   I
Sbjct: 298 KMREVAGDNLLAEII 312

Probable inactive ADP-ribosyltransferase that may be involved in stress and developmental responses.

Arabidopsis thaliana (taxid: 3702)

>sp|O64592|SRO3_ARATH Probable inactive poly [ADP-ribose] polymerase SRO3 OS=Arabidopsis thaliana GN=SRO3 PE=1 SV=2

 Score =  150 bits (378), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 154/309 (49%), Gaps = 65/309 (21%)

Query: 108 LDSDSVRSMFLMGM-SPSSGVDILDVQRCSSASLL---ARFELFQKQLE-ITNKCRGDAN 162
            + + +++ FL GM S ++   I+ V++  +  L+   A+F +F+   E +  K  G AN
Sbjct: 45  FEHNLIKNCFLSGMGSFATETTIVTVRKILTQRLITTKAKFAVFKLFTEAMKRKNNGYAN 104

Query: 163 VRYAWLATSKGALSTMIMYGLGHCGASTTKS---TYGIGVHLAAASCPDTSASYTDVDEN 219
           +RY W + SK  +  +I YG  +      ++   ++G+G+HL        +A   + DE 
Sbjct: 105 IRYGWYSGSKEEIDRVITYGFSNREIKKVENDVGSHGVGIHLVHHRYSLAAALVGEGDEE 164

Query: 220 GVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEF 279
           G+++++LCRVI+G  E +  G+KQ +PSS  FDSGVD+L+NPR Y++W+ NMN++I P +
Sbjct: 165 GIKNILLCRVILGKPEQIVTGSKQSYPSSNQFDSGVDNLENPRKYVIWSCNMNSYILPTY 224

Query: 280 VVSFKFSSNVEGHLIRSESQRAISVLTTSSQGLQGHLRLDSSADFGDVSHPVSDSGGSQG 339
           +VSFK       HL+R               GL G  R                      
Sbjct: 225 IVSFK------SHLLR---------------GLIGRAR---------------------- 241

Query: 340 KAPSTSSSTPRAPKSPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKL 399
                         SP + F +L + +S  +    M  I   Y+ FR +K+ R+  V+K+
Sbjct: 242 --------------SPCVSFSVLMSILSKSLDAARMNLILTSYDDFRKRKLRREQLVRKI 287

Query: 400 RLIVGDDLL 408
           R +VGD+LL
Sbjct: 288 REVVGDNLL 296

Probable inactive ADP-ribosyltransferase that may be involved in stress and developmental responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJJ3|SRO5_ARATH Probable inactive poly [ADP-ribose] polymerase SRO5 OS=Arabidopsis thaliana GN=SRO5 PE=1 SV=1

 Score =  126 bits (317), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 132/284 (46%), Gaps = 59/284 (20%)

Query: 137 SASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYG 196
           S + L  F++FQ+ +++ +   G A V+Y W + SK  L T+  YG           ++G
Sbjct: 82  SRAKLKTFQVFQEAVQMKHGGDGGAKVKYGWCSVSKHELKTIFEYGFSE--PLRNDGSFG 139

Query: 197 IGVHLAAASCP-DTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGV 255
            G++L+  + P D         E+G+R ++LCRV++G  E +  G+ +  PSS +FDSGV
Sbjct: 140 RGLYLSPDNSPLDCLKDSASESEDGMRFLLLCRVLLGKSEIVPQGSTRSCPSSPEFDSGV 199

Query: 256 DDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNVEGHLIRSESQRAISVLTTSSQGLQGH 315
           DDL + + YIVW+ +MNTH+ PEF+V  K   N                LT S + L+  
Sbjct: 200 DDLVSTKKYIVWSTHMNTHVLPEFLVCIKAPFN----------------LTRSPKRLR-- 241

Query: 316 LRLDSSADFGDVSHPVSDSGGSQGKAPSTSSSTPRAPKSPWMPFPMLFASISNKVSPKVM 375
                                                 SPWM FP+L  ++S  + P  +
Sbjct: 242 --------------------------------------SPWMAFPVLIKALSKFLPPSQI 263

Query: 376 EQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKI 419
             I   Y+  + +++ R + ++++R I GD LL   I A   K+
Sbjct: 264 LVIQKHYKDQQNRRITRSELIQRVRSITGDKLLVHIIKACGHKV 307

Probable inactive ADP-ribosyltransferase that may be involved in stress and developmental responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STU1|SRO4_ARATH Probable inactive poly [ADP-ribose] polymerase SRO4 OS=Arabidopsis thaliana GN=SRO4 PE=2 SV=2

 Score = 82.8 bits (203), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 10/124 (8%)

Query: 161 ANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENG 220
           A V+Y      K  L  ++MYG  +     +     +   +      D S+S    +E+G
Sbjct: 122 ARVKYGCCGVEKEELKAILMYGFSNNALCLSPDNAPLQCMI------DPSSS---CNEDG 172

Query: 221 VRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFV 280
           +  ++  R+IMG  E +   T Q +PSS +FDSGVD L +P  YI+W+ +MNTH+ PEFV
Sbjct: 173 ISFLLFSRIIMGKSE-VVCSTSQSYPSSMEFDSGVDSLTSPNKYIIWSTHMNTHVLPEFV 231

Query: 281 VSFK 284
           V  K
Sbjct: 232 VCIK 235

Probable inactive ADP-ribosyltransferase that may be involved in stress and developmental responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q460N3|PAR15_HUMAN Poly [ADP-ribose] polymerase 15 OS=Homo sapiens GN=PARP15 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 78/164 (47%), Gaps = 10/164 (6%)

Query: 125 SGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLG 184
           S   I  ++R  +A L   +++ ++Q++I N  +   N R  +  T   ++  +  +G  
Sbjct: 496 SSYAIEKIERIQNAFLWQSYQVKKRQMDIKNDHKN--NERLLFHGTDADSVPYVNQHGFN 553

Query: 185 HCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEP-----LFP 239
              A     +YG G + A  +      +Y+  D NG +HM + RV+ G         + P
Sbjct: 554 RSCAGKNAVSYGKGTYFAVDASYSAKDTYSKPDSNGRKHMYVVRVLTGVFTKGRAGLVTP 613

Query: 240 GTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSF 283
             K  H  ++ FDS  ++ ++P+ ++V+    +   +PE++++F
Sbjct: 614 PPKNPHNPTDLFDSVTNNTRSPKLFVVF---FDNQAYPEYLITF 654

Transcriptional repressor. Has ADP-ribosyltransferase activity.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: 0

>sp|Q2EMV9|PAR14_MOUSE Poly [ADP-ribose] polymerase 14 OS=Mus musculus GN=Parp14 PE=1 SV=3

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 129  ILDVQRCSSASLLARFELFQKQLEITNKCRGDA-NVRYAWLATSKGALSTMIMYGLGHCG 187
            I  ++R  + +L  R++ ++K ++  N   G+  N ++ +  T   +L  +   G     
Sbjct: 1661 IEKIERIQNPALWRRYQAYKKSMDEKN---GNVRNEKHLFHGTEASSLPQLNSNGFNRSY 1717

Query: 188  ASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEP-----LFPGTK 242
            A    + YG G + A  +      +Y+  D NG ++M   RV+ GN        + P ++
Sbjct: 1718 AGKNATAYGKGTYFAVKASYSACDTYSRPDTNGRKYMYYVRVLTGNYTNGNASLIVPPSR 1777

Query: 243  QFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFK 284
                +++ +D+  D+ +NP  ++V+  N     +PE++++F+
Sbjct: 1778 DPQNAADLYDTVTDNDKNPSIFVVFYDN---QTYPEYLITFR 1816

Has ADP-ribosyltransferase activity (By similarity). Enhances STAT6-dependent transcription.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: 0

>sp|Q54YW4|Y8045_DICDI Probable poly [ADP-ribose] polymerase DDB_G0278045 OS=Dictyostelium discoideum GN=DDB_G0278045 PE=4 SV=3

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 82/168 (48%), Gaps = 21/168 (12%)

Query: 124 SSGVDILDVQRCSSASLLARFELFQKQL----EITNKCRGDANVRYAWLATS-KGALSTM 178
           S+  +I+ ++R  + SL   F+  +K+L    +++N    ++ + +   A   K   S+ 
Sbjct: 58  SNSFEIIKIERIQNKSLWRNFDESRKRLNEKYQVSNLDFLESTLFHGTRANDPKLIFSSK 117

Query: 179 IMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLF 238
           + + +G     ++   YGIG++ A  +    + S+ +   +G + M LCRV++GN  P  
Sbjct: 118 VGFDIG----KSSFGNYGIGLYFALNASYSNNYSFEESPTSGCKQMFLCRVLLGNSAP-- 171

Query: 239 PGTKQFHPSSEDFDSGVDDLQNP--RHYIVWNMNMNTHIFPEFVVSFK 284
           P  K+        DS  D ++ P    +I   +  N   +P++++S++
Sbjct: 172 PTQKELKN-----DSTQDSIKGPGGEMFI---LKSNHTAYPDYLISYR 211

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: 0

>sp|Q460N5|PAR14_HUMAN Poly [ADP-ribose] polymerase 14 OS=Homo sapiens GN=PARP14 PE=1 SV=3

 Score = 46.6 bits (109), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/161 (19%), Positives = 71/161 (44%), Gaps = 10/161 (6%)

Query: 129  ILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGA 188
            I  ++R  +  L   ++  +K ++  N      N +  +  T  G++  +   G     A
Sbjct: 1645 IEKIERIQNPDLWNSYQAKKKTMDAKNG--QTMNEKQLFHGTDAGSVPHVNRNGFNRSYA 1702

Query: 189  STTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIM-----GNMEPLFPGTKQ 243
                  YG G + A  +    + +Y+  D NG +H+   RV+      GN   + P +K 
Sbjct: 1703 GKNAVAYGKGTYFAVNANYSANDTYSRPDANGRKHVYYVRVLTGIYTHGNHSLIVPPSKN 1762

Query: 244  FHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFK 284
                ++ +D+  D++ +P  ++ +    +   +PE++++F+
Sbjct: 1763 PQNPTDLYDTVTDNVHHPSLFVAF---YDYQAYPEYLITFR 1800

Enhances STAT6-dependent transcription (By similarity). Has ADP-ribosyltransferase activity.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	450
224138216	623	predicted protein [Populus trichocarpa]	0.897	0.648	0.623	1e-145
224071395	615	predicted protein [Populus trichocarpa]	0.911	0.666	0.632	1e-143
359474462	599	PREDICTED: inactive poly [ADP-ribose] po	0.922	0.692	0.599	1e-134
147815590	604	hypothetical protein VITISV_006105 [Viti	0.875	0.652	0.610	1e-131
356496243	583	PREDICTED: inactive poly [ADP-ribose] po	0.868	0.670	0.563	1e-123
359474538	598	PREDICTED: inactive poly [ADP-ribose] po	0.888	0.668	0.571	1e-122
356531443	583	PREDICTED: inactive poly [ADP-ribose] po	0.868	0.670	0.558	1e-121
297742051	390	unnamed protein product [Vitis vinifera]	0.842	0.971	0.546	1e-119
147859682	857	hypothetical protein VITISV_023316 [Viti	0.884	0.464	0.519	1e-115
357485539	573	hypothetical protein MTR_5g032190 [Medic	0.822	0.645	0.526	1e-105

>gi|224138216|ref|XP_002326547.1| predicted protein [Populus trichocarpa] gi|222833869|gb|EEE72346.1| predicted protein [Populus trichocarpa]

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 265/425 (62%), Positives = 316/425 (74%), Gaps = 21/425 (4%)

Query: 26  IKLQLEIDIAGLDQSKLKECSGESNAFIKQIQIAPKPASNKYVVEVEDSCNRKPDAKLDE 85
           IKLQLEIDI G DQSKL ECSGESN  +K IQIA KP S+ ++VEV DS NRK   K+ E
Sbjct: 196 IKLQLEIDINGGDQSKL-ECSGESNGLVKHIQIAQKPTSDHHLVEVGDSYNRKTGEKIVE 254

Query: 86  TTGQNQNTKTSLVNKSVVVDDKLDSDSVRSMFLMGMSPSSGVDILDVQRCSSASLLARFE 145
           +  +NQ  K +LV  +      LDSD+V+ +F+  M+P  G DI+D+ RCSS  +  RFE
Sbjct: 255 SNEENQQIKANLVTGTESFTQMLDSDTVKKIFVTSMNPFGGADIVDISRCSSTLMPVRFE 314

Query: 146 LFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAAS 205
           LFQKQ+E+T K RGDANVRYAWLA+SKGALST+++YGLGHC   TTKS +GIGVHL+AA+
Sbjct: 315 LFQKQIELTEKYRGDANVRYAWLASSKGALSTIMLYGLGHCVPCTTKSEHGIGVHLSAAN 374

Query: 206 CPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYI 265
              TSA+Y DVDENGVRH+V CRVIMGNME L  G++QFHPSSEDFDSGVDDL+NPR YI
Sbjct: 375 FCHTSANYCDVDENGVRHLVFCRVIMGNMELLQHGSRQFHPSSEDFDSGVDDLENPREYI 434

Query: 266 VWNMNMNTHIFPEFVVSFKFSSNVEGHLIRSESQRAISVLTTSSQGLQGHLRLDS----- 320
           VWNMNMNTHI+PEFVVSFKF+ N EG L+ SES+ ++S +TTSS G QG L ++S     
Sbjct: 435 VWNMNMNTHIYPEFVVSFKFTPNSEGFLVGSESKHSVSGVTTSSNGGQGCLPVESPAVDL 494

Query: 321 ---------------SADFGDVSHPVSDSGGSQGKAPSTSSSTPRAPKSPWMPFPMLFAS 365
                          +AD G    PVS SG S GK+PS SSS  R PKSPWMPFPMLFA 
Sbjct: 495 NVPVESSAVDLNKSPAADMGSEIQPVSGSGRSLGKSPSLSSSNTRTPKSPWMPFPMLFAV 554

Query: 366 ISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKIPSKREV 425
           ISNKV  K ME I+N YELFR KK++R++FVKKLRLIVGD LL+STIT+LQ K+PS+ EV
Sbjct: 555 ISNKVPSKDMELITNHYELFREKKISRENFVKKLRLIVGDALLKSTITSLQGKLPSECEV 614

Query: 426 GEVKP 430
              KP
Sbjct: 615 PVAKP 619

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071395|ref|XP_002303439.1| predicted protein [Populus trichocarpa] gi|222840871|gb|EEE78418.1| predicted protein [Populus trichocarpa]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 275/435 (63%), Positives = 319/435 (73%), Gaps = 25/435 (5%)

Query: 26  IKLQLEIDIAGLDQSKLKECSGESNAFIKQIQIAPKPASNKYVVEVEDSCNRKPDAKLDE 85
           IKLQLEIDI G +QSKLKE SGESNA +K IQI  KP S+ Y VEVEDSCNRKP  K+DE
Sbjct: 186 IKLQLEIDINGGNQSKLKEYSGESNALVKHIQIGQKPMSDHYHVEVEDSCNRKPGEKIDE 245

Query: 86  TTGQNQNTKTSLVNKSVVVDDKLDSDSVRSMFLMGMSPSSGVDILDVQRCSSASLLARFE 145
              +NQ  + +LV +S      LDSD+V+ +F+  M P  G DI+D+ RCSS S+ ARFE
Sbjct: 246 DMEENQQIEANLVTESF--KQMLDSDTVKKLFVTVMKPFGGADIVDIYRCSSTSMQARFE 303

Query: 146 LFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAAS 205
           LF KQ+ +T K RGDANVRYAWLA+SKGALST++ YGLGHCG  TT S +GIGVHL+AA+
Sbjct: 304 LFLKQIALTEKYRGDANVRYAWLASSKGALSTIMSYGLGHCGPCTTNSKHGIGVHLSAAN 363

Query: 206 CPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYI 265
           C  TS  Y DVDENG RH+V CRVIMGNME L  G++QFHPSSE+FDSGVDDL++PR YI
Sbjct: 364 CCHTSVKYCDVDENGERHLVFCRVIMGNMELLHSGSRQFHPSSENFDSGVDDLESPREYI 423

Query: 266 VWNMNMNTHIFPEFVVSFKFSSNVEGHLIRSESQRAISVLTTSSQGLQGHLRLDSS---- 321
           VWNMNMNTHI+PEFVVSFK SS  EG L+ SES+  +S +TTS  G QG L ++SS    
Sbjct: 424 VWNMNMNTHIYPEFVVSFKISSTTEGFLVASESKHTVSGVTTSHGG-QGRLPVESSAVDL 482

Query: 322 ----------------ADFGDVSHPVSDSGGSQGKAPSTSSSTPRAPKSPWMPFPMLFAS 365
                           AD G    PV  SG S GK+PS SSS+ RAPKSPWMPFPMLFA+
Sbjct: 483 NLPVESSAVDLNESPTADMGSKIQPVLGSGRSLGKSPSLSSSSTRAPKSPWMPFPMLFAA 542

Query: 366 ISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKIPSKREV 425
           ISNKV  K ME I+N YELFR KKVNR+DFVKKLRLIVGD LL+STIT+LQCK+PSK EV
Sbjct: 543 ISNKVPSKDMELITNNYELFREKKVNREDFVKKLRLIVGDALLKSTITSLQCKLPSKGEV 602

Query: 426 GEVKPDVDMEGSPEL 440
              KP    EGS  L
Sbjct: 603 PVSKPTA--EGSAGL 615

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474462|ref|XP_002276953.2| PREDICTED: inactive poly [ADP-ribose] polymerase RCD1-like [Vitis vinifera]

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 251/419 (59%), Positives = 301/419 (71%), Gaps = 4/419 (0%)

Query: 25  NIKLQLEIDIAGLDQSKLKECSGESNAFIKQIQIAPKPASNKYVVEVEDSCNRKPDAKLD 84
           +IKLQLEIDI G+  SKL+ECSGESNA  K   I  KPASN++ VEVEDS N+  D K+D
Sbjct: 182 DIKLQLEIDIKGVGHSKLEECSGESNALDKHFLIGKKPASNRFDVEVEDS-NKMSDVKVD 240

Query: 85  ETTGQNQNTKTSLVNKSVVVDDKLDSDSVRSMFLMGMSPSSGVDILDVQRCSSASLLARF 144
           E  G+NQ  + +L+++       LD D+VR MF  GM+     DI++V R SSAS+ AR 
Sbjct: 241 EAVGENQQIEGNLISRIGSSHGSLDFDTVRDMFTSGMNSLISADIIEVYRGSSASMEARL 300

Query: 145 ELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAA 204
           ELFQKQ+EIT+K R DANV+YAWLA SK ALS+++MYGLGHC  S  K  YGIGVHL AA
Sbjct: 301 ELFQKQIEITSKYRADANVKYAWLAASKEALSSIMMYGLGHCRPSKVKPVYGIGVHLTAA 360

Query: 205 SCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHY 264
           +    S +Y DVDENGV+H+VLCRVIMGNME + PG+ Q HPSSE+FDSGVDDLQNP+HY
Sbjct: 361 NFSYPSVNYCDVDENGVQHIVLCRVIMGNMELVHPGSGQCHPSSENFDSGVDDLQNPKHY 420

Query: 265 IVWNMNMNTHIFPEFVVSFKFSSNV--EGHLIRSESQRAISVLTTSSQGLQGHLRLD-SS 321
           I+WNMNMNTHI+PE+VVSFK SS V  EG+LI +ES   IS +TT     QGH +L    
Sbjct: 421 IIWNMNMNTHIYPEYVVSFKVSSRVGAEGYLIGNESNYDISGVTTCQGQSQGHSKLGLHP 480

Query: 322 ADFGDVSHPVSDSGGSQGKAPSTSSSTPRAPKSPWMPFPMLFASISNKVSPKVMEQISNQ 381
              G+ SHP    G S GKA +  SST R PKSPWMPFPMLFA+IS KV  K M+ +  Q
Sbjct: 481 VGLGNDSHPTPSLGRSLGKATTLGSSTLRVPKSPWMPFPMLFAAISKKVPLKDMQLVDTQ 540

Query: 382 YELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKIPSKREVGEVKPDVDMEGSPEL 440
           YELFR KK++R DFVKKLRLIVGD LL+STIT LQCK+PSK       P  ++E S  L
Sbjct: 541 YELFRRKKISRADFVKKLRLIVGDTLLKSTITHLQCKVPSKTSCDLEAPKQELESSGSL 599

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class: N/A

Phylum: Streptophyta

>gi|147815590|emb|CAN61759.1| hypothetical protein VITISV_006105 [Vitis vinifera]

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 243/398 (61%), Positives = 291/398 (73%), Gaps = 4/398 (1%)

Query: 25  NIKLQLEIDIAGLDQSKLKECSGESNAFIKQIQIAPKPASNKYVVEVEDSCNRKPDAKLD 84
           +IKLQLEIDI G+  SKL+ECSGESNA  K   I  KPASN++ VEVEDS N+  D K+D
Sbjct: 182 DIKLQLEIDIKGVGHSKLEECSGESNALDKHFLIGKKPASNRFDVEVEDS-NKMSDVKVD 240

Query: 85  ETTGQNQNTKTSLVNKSVVVDDKLDSDSVRSMFLMGMSPSSGVDILDVQRCSSASLLARF 144
           E  G+NQ  + +L+++       LD D+VR MF  GM+     DI++V R SSAS+ AR 
Sbjct: 241 EAVGENQQIEGNLISRIGSSHGSLDFDTVRDMFTSGMNSLISADIIEVYRGSSASMEARL 300

Query: 145 ELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAA 204
           ELFQKQ+EIT+K R DANV+YAWLA SK ALS+++MYGLGHC  S  K  YGIGVHL AA
Sbjct: 301 ELFQKQIEITSKYRADANVKYAWLAASKEALSSIMMYGLGHCRPSKVKPVYGIGVHLTAA 360

Query: 205 SCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHY 264
           +    S +Y DVDENGV+H+VLCRVIMGNME + PG+ Q HPSSE+FDSGVDDLQNP+HY
Sbjct: 361 NFSYPSVNYCDVDENGVQHIVLCRVIMGNMELVHPGSGQCHPSSENFDSGVDDLQNPKHY 420

Query: 265 IVWNMNMNTHIFPEFVVSFKFSSNV--EGHLIRSESQRAISVLTTSSQGLQGHLRLD-SS 321
           I+WNMNMNTHI+PE+VVSFK SS V  EG+LI +ES   IS +TT     QGH +L    
Sbjct: 421 IIWNMNMNTHIYPEYVVSFKVSSRVGAEGYLIGNESNYDISGVTTCQGQSQGHSKLGLHP 480

Query: 322 ADFGDVSHPVSDSGGSQGKAPSTSSSTPRAPKSPWMPFPMLFASISNKVSPKVMEQISNQ 381
               + SHP    G S GKA +  SST R PKSPWMPFPMLFA+IS KV  K M+ +  Q
Sbjct: 481 VGLXNDSHPTPSLGRSLGKATTLGSSTLRVPKSPWMPFPMLFAAISKKVPLKDMQLVDTQ 540

Query: 382 YELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKI 419
           YELFR KK++R DFVKKLRLIVGD LL+STIT LQCK+
Sbjct: 541 YELFRRKKISRADFVKKLRLIVGDTLLKSTITHLQCKV 578

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496243|ref|XP_003516978.1| PREDICTED: inactive poly [ADP-ribose] polymerase RCD1-like [Glycine max]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/410 (56%), Positives = 287/410 (70%), Gaps = 19/410 (4%)

Query: 26  IKLQLEIDIAGLDQSKLKECSGESNAFIKQIQIAPKPASNKYVVEVEDSCNRKPDAKLDE 85
           IKL LE++I G+DQS+L ECSGESNA +K IQI  K    +Y VEVEDS N+K    + E
Sbjct: 190 IKLHLEVEINGVDQSRLSECSGESNALVKGIQIDTKQNCCQYDVEVEDSINKKDCGNVGE 249

Query: 86  TTGQNQNTKTSLVNKSVVVDDKLDSDSVRSMFLMGMSP--SSGVDILDVQRCSSASLLAR 143
              Q+Q+       +SV     LD +SV+ MFL GMS   S+  DI+++ +CS AS+ AR
Sbjct: 250 DIQQHQDIGLDAYTESVY--GILDLNSVQKMFLKGMSSFGSTDSDIVEIYQCSGASMQAR 307

Query: 144 FELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAA 203
           +ELFQKQ E+T K  G+AN+RYAWLA+SKG LSTM+ YGL H G S +K TYGIGVHLAA
Sbjct: 308 WELFQKQAELTKKNHGEANIRYAWLASSKGELSTMMNYGLSHYGLSGSKCTYGIGVHLAA 367

Query: 204 ASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRH 263
            +CPD S  Y DVDENGVRH+ LCRVIMGNME L PGT QFHPSS ++D+GVD ++ PR+
Sbjct: 368 VTCPDASVRYCDVDENGVRHLALCRVIMGNMEILQPGTGQFHPSSCEYDNGVDSIECPRY 427

Query: 264 YIVWNMNMNTHIFPEFVVSFKFSSNVEGHLIRSESQRAISVLTTSSQGLQGHLRLDSSAD 323
           Y+VWNMNMNTHI+PEFVVSFK SS+ EGH   SE +  +S + ++ QG  G L  +SS  
Sbjct: 428 YVVWNMNMNTHIYPEFVVSFKVSSDAEGHFCGSEGKN-VSGVNSACQGPHGLLHSESSTV 486

Query: 324 FGDVSHPVSDSGGSQGKAPSTSSSTPRAPKSPWMPFPMLFASISNKVSPKVMEQISNQYE 383
                          GKAPS  +STP+ PKSPWMPFP+L  +I N+V PK M+ I   YE
Sbjct: 487 -------------DNGKAPSMVASTPKVPKSPWMPFPLLLDAIRNQVPPKGMDVIKIYYE 533

Query: 384 LFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKIPSKREV-GEVKPDV 432
            FR+K ++RDDFVK LRLIVGD LLR+TIT LQ KIPS  E+ G +K +V
Sbjct: 534 QFRSKHISRDDFVKMLRLIVGDGLLRTTITNLQFKIPSGGELKGSIKKEV 583

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class: N/A

Phylum: Streptophyta

>gi|359474538|ref|XP_002277020.2| PREDICTED: inactive poly [ADP-ribose] polymerase RCD1-like [Vitis vinifera]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/404 (57%), Positives = 285/404 (70%), Gaps = 4/404 (0%)

Query: 25  NIKLQLEIDIAGLDQSKLKECSGESNAFIKQIQIAPKPASNKYVVEVEDSCNRKPDAKLD 84
           +IKLQLEID+     + LKECSGESN  IK + I   PAS++  VEVEDSCN+  DAK+D
Sbjct: 178 DIKLQLEIDVNDAGHTNLKECSGESNPVIKHVLIDKNPASDQNDVEVEDSCNKTSDAKMD 237

Query: 85  ETTGQNQNTKTSLVNKSVVVDDKLDSDSVRSMFLMGMSPSSGVDILDVQRCSSASLLARF 144
           +  G+NQ  +  LV +   V   L  D+VR MF+  MSP     IL+V + SS+S+ AR 
Sbjct: 238 KAVGENQQMEGKLVTRIESVHGTLKFDTVRDMFISSMSPFISASILEVYQGSSSSMQARL 297

Query: 145 ELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAA 204
           ELFQKQ+EIT+K R +ANVRYAWLA+SK ALS+++MYGLGH G S  K TYGIGVHL A 
Sbjct: 298 ELFQKQVEITSKYRTEANVRYAWLASSKEALSSIMMYGLGHYGTSQEKLTYGIGVHLTAV 357

Query: 205 SCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHY 264
           + P  SA+Y DVDENGV+H+VLCRVI+GNME +  G+KQ +PS EDFDSGVDDLQNPRHY
Sbjct: 358 NFPYISANYCDVDENGVQHVVLCRVILGNMELVHLGSKQCYPSCEDFDSGVDDLQNPRHY 417

Query: 265 IVWNMNMNTHIFPE--FVVSFKFSSNVEGHLIRSESQRAISVLTTSSQGLQGHLRLDSSA 322
           IVWNMNMNTHI+PE         SS+ EG+L+ +  +  +S  +   +  +G L+L S  
Sbjct: 418 IVWNMNMNTHIYPEFVVSFKVSSSSSAEGYLVENGRKDDVSGFSPPQRQPEGQLQLASHH 477

Query: 323 DFGDVSHPVSDSG--GSQGKAPSTSSSTPRAPKSPWMPFPMLFASISNKVSPKVMEQISN 380
             G   H     G  GS GKA +  SST + PKSPWMPFPMLFA+IS KV  K M+ ++ 
Sbjct: 478 PVGLGPHCPQTPGLEGSLGKAATFGSSTVKVPKSPWMPFPMLFAAISKKVPLKDMQLVNA 537

Query: 381 QYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKIPSKRE 424
           QYE FR KK+NR DFVKKLR+IVGD LLRSTIT LQCK+PSK +
Sbjct: 538 QYEQFRTKKINRADFVKKLRMIVGDTLLRSTITHLQCKVPSKSQ 581

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class: N/A

Phylum: Streptophyta

>gi|356531443|ref|XP_003534287.1| PREDICTED: inactive poly [ADP-ribose] polymerase RCD1-like [Glycine max]

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/412 (55%), Positives = 283/412 (68%), Gaps = 21/412 (5%)

Query: 26  IKLQLEIDIAGLDQSKLKECSGESNAFIKQIQIAPKPASNKYVVEVEDSCNRKPDAKLDE 85
           IKL LE++I G+DQS+L ECSGESNA +K IQI  K    +Y VEVEDS N+K    + E
Sbjct: 190 IKLHLEVEINGVDQSRLSECSGESNALVKGIQIDTKENCCQYDVEVEDSINKKDCGNVGE 249

Query: 86  TTGQNQNTKTSLVNKSVVVDDKLDSDSVRSMFLMGMSP--SSGVDILDVQRCSSASLLAR 143
              Q+Q+       +SV    KLD +SV+ MFL GM    S+  DI+++  CS AS+ AR
Sbjct: 250 DIQQHQDIGLDAYTESVY--GKLDLNSVQKMFLKGMCSFGSTDSDIVEIYHCSGASMQAR 307

Query: 144 FELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAA 203
           +ELFQKQ EIT K  G+AN+RYAWLA+SKG LSTM+ YGL H G S +K TYGIGVHLAA
Sbjct: 308 WELFQKQAEITKKNHGEANIRYAWLASSKGELSTMMNYGLSHYGLSGSKCTYGIGVHLAA 367

Query: 204 ASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRH 263
            +CPD S  Y DVDENGVRH+ LCRVIMGNME L PGT QFHPSS ++D+GVD ++ P++
Sbjct: 368 VTCPDASVRYCDVDENGVRHLALCRVIMGNMEILRPGTDQFHPSSCEYDNGVDAIECPQY 427

Query: 264 YIVWNMNMNTHIFPEFVVSFKFSSNVEGHLIRSESQRAISVLTTSSQGLQGHLRLDSSAD 323
           Y+VWNMNMNTHI+PEFVVSFK SS+ EGH   SE +  +S + T+  G  G L  +SS  
Sbjct: 428 YVVWNMNMNTHIYPEFVVSFKVSSDAEGHFCGSEGKN-VSGVNTACDGPHGLLNSESST- 485

Query: 324 FGDVSHPVSDSGGSQGKAPSTSSSTPRAPKSPWMPFPMLFASISNKVSPKVMEQISNQYE 383
                          GKAPS  SSTP+ PKSPWMPFP+L  +I ++V P  M+ I   YE
Sbjct: 486 ------------VDNGKAPSMVSSTPKVPKSPWMPFPVLLDAIRDQVPPTGMDVIKTYYE 533

Query: 384 LFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKIPSKREVGEVKPDVDME 435
            FR+K ++RDDFVK LRLIVGD LLR+TIT LQ KIPS    GE+K  +  E
Sbjct: 534 QFRSKHISRDDFVKMLRLIVGDGLLRTTITNLQYKIPSG---GELKDSIKKE 582

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class: N/A

Phylum: Streptophyta

>gi|297742051|emb|CBI33838.3| unnamed protein product [Vitis vinifera]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/419 (54%), Positives = 276/419 (65%), Gaps = 40/419 (9%)

Query: 25  NIKLQLEIDIAGLDQSKLKECSGESNAFIKQIQIAPKPASNKYVVEVEDSCNRKPDAKLD 84
           +IKLQLEIDI G+  SKL+EC                                     +D
Sbjct: 9   DIKLQLEIDIKGVGHSKLEEC-------------------------------------MD 31

Query: 85  ETTGQNQNTKTSLVNKSVVVDDKLDSDSVRSMFLMGMSPSSGVDILDVQRCSSASLLARF 144
           E  G+NQ  + +L+++       LD D+VR MF  GM+     DI++V R SSAS+ AR 
Sbjct: 32  EAVGENQQIEGNLISRIGSSHGSLDFDTVRDMFTSGMNSLISADIIEVYRGSSASMEARL 91

Query: 145 ELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAA 204
           ELFQKQ+EIT+K R DANV+YAWLA SK ALS+++MYGLGHC  S  K  YGIGVHL AA
Sbjct: 92  ELFQKQIEITSKYRADANVKYAWLAASKEALSSIMMYGLGHCRPSKVKPVYGIGVHLTAA 151

Query: 205 SCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHY 264
           +    S +Y DVDENGV+H+VLCRVIMGNME + PG+ Q HPSSE+FDSGVDDLQNP+HY
Sbjct: 152 NFSYPSVNYCDVDENGVQHIVLCRVIMGNMELVHPGSGQCHPSSENFDSGVDDLQNPKHY 211

Query: 265 IVWNMNMNTHIFPEFVVSFKFSSNV--EGHLIRSESQRAISVLTTSSQGLQGHLRLD-SS 321
           I+WNMNMNTHI+PE+VVSFK SS V  EG+LI +ES   IS +TT     QGH +L    
Sbjct: 212 IIWNMNMNTHIYPEYVVSFKVSSRVGAEGYLIGNESNYDISGVTTCQGQSQGHSKLGLHP 271

Query: 322 ADFGDVSHPVSDSGGSQGKAPSTSSSTPRAPKSPWMPFPMLFASISNKVSPKVMEQISNQ 381
              G+ SHP    G S GKA +  SST R PKSPWMPFPMLFA+IS KV  K M+ +  Q
Sbjct: 272 VGLGNDSHPTPSLGRSLGKATTLGSSTLRVPKSPWMPFPMLFAAISKKVPLKDMQLVDTQ 331

Query: 382 YELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKIPSKREVGEVKPDVDMEGSPEL 440
           YELFR KK++R DFVKKLRLIVGD LL+STIT LQCK+PSK       P  ++E S  L
Sbjct: 332 YELFRRKKISRADFVKKLRLIVGDTLLKSTITHLQCKVPSKTSCDLEAPKQELESSGSL 390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147859682|emb|CAN81025.1| hypothetical protein VITISV_023316 [Vitis vinifera]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/445 (51%), Positives = 285/445 (64%), Gaps = 47/445 (10%)

Query: 25  NIKLQLEIDIAGLDQSKLKECSGESNAFIKQIQIAPKPASNKYVVEVEDSCNRKPDAKLD 84
           +IKLQLEID+     + LKECSGESN  IK + I   PAS++  VEVEDSCN+  DAK+D
Sbjct: 178 DIKLQLEIDVNDXGHTNLKECSGESNPVIKHVLIDKNPASDQNDVEVEDSCNKTSDAKMD 237

Query: 85  ETTGQNQNTKTSLVNKSVVVDDKLDSDSVRSMFLMGMSPSSGVDILDVQRCSSASLLARF 144
           +  G+NQ  +  LV +   V   L  D+VR MF+  MSP     IL+V + SS+S+ AR 
Sbjct: 238 KAXGENQQMEGKLVTRIESVHGTLKFDTVRDMFISSMSPFISASILEVYQGSSSSMQARL 297

Query: 145 ELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAA 204
           ELFQKQ+EIT+K R +ANVRYAWLA+SK ALS+++MYGLGH G S  K TYGIGVHL A 
Sbjct: 298 ELFQKQVEITSKYRTEANVRYAWLASSKEALSSIMMYGLGHYGTSQEKLTYGIGVHLTAV 357

Query: 205 SCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHY 264
           + P  SA+Y DVDENGV+H+VLCRVI+GNME +  G+KQ +PS EDFDSGVDDLQNPRHY
Sbjct: 358 NFPYISANYCDVDENGVQHVVLCRVILGNMELVHLGSKQCYPSCEDFDSGVDDLQNPRHY 417

Query: 265 IVWNMNMNTHIFPE--FVVSFKFSSNVEGHLIRSESQRAISVLTTSSQGLQGHLRLDSSA 322
           IVWNMNMNTHI+PE         SS+ EG+L+ +  +  +S  +   +  +G L+L S  
Sbjct: 418 IVWNMNMNTHIYPEFVVSFKVSSSSSAEGYLVENGRKDDVSGFSPPQRQPEGQLQLASHH 477

Query: 323 DFGDV----SHPVSDSG-----------------------------------------GS 337
             G V       VS+ G                                         GS
Sbjct: 478 PVGLVVTGTGKEVSNEGYHIKRSLEGSGLNEVLRFETWIFGFPNGKKGIEAAVPEGLEGS 537

Query: 338 QGKAPSTSSSTPRAPKSPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVK 397
            GKA +  SST + PKSPWMPFPMLFA+IS KV  K M+ ++ QYE FR KK+NR DFVK
Sbjct: 538 LGKAATFGSSTVKVPKSPWMPFPMLFAAISKKVPLKDMQLVNAQYEQFRTKKINRADFVK 597

Query: 398 KLRLIVGDDLLRSTITALQCKIPSK 422
           KLR+IVGD LLRSTIT LQCK  +K
Sbjct: 598 KLRMIVGDTLLRSTITHLQCKETNK 622

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485539|ref|XP_003613057.1| hypothetical protein MTR_5g032190 [Medicago truncatula] gi|355514392|gb|AES96015.1| hypothetical protein MTR_5g032190 [Medicago truncatula]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/397 (52%), Positives = 265/397 (66%), Gaps = 27/397 (6%)

Query: 25  NIKLQLEIDIAGLDQSKLKECSGESNAFIKQIQIAPKPASNKYVVEVEDSCNRKPDAKLD 84
           +IKL LEI+I G+D SKL E +GESN  +K  QI  K       +E+EDS N   +  + 
Sbjct: 191 DIKLHLEIEINGVDASKLGESTGESNVIVKHTQIDAKQND----LEIEDSSNNMGNGNVG 246

Query: 85  ETTGQNQNTKTSLVNKSVVVDDKLDSDSVRSMFLMGMSPSSGVDILDVQRCSSASLLARF 144
           E   QN+N     +  S VV  +LD D+V+ MFL G S     DI+++   SS  +L+R 
Sbjct: 247 EAVEQNKN-----IVGSAVVYVRLDLDTVQKMFLKGTSSFGSADIVEIYPFSSTMMLSRL 301

Query: 145 ELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAA 204
           ELF+KQ EIT  CRGDAN++YAWLA+SKG LSTM+  GLGHCG ST+K T+G GVHLAAA
Sbjct: 302 ELFEKQAEITKNCRGDANIQYAWLASSKGELSTMMKCGLGHCGISTSKCTHGFGVHLAAA 361

Query: 205 SCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHY 264
           + P  SAS+ D+DENGVRH+V CRVIMGNME L PGT+QF PSS D+DSGVDD+ NPR+Y
Sbjct: 362 TFPFASASHCDIDENGVRHLVFCRVIMGNMELLRPGTRQFRPSSSDYDSGVDDIHNPRYY 421

Query: 265 IVWNMNMNTHIFPEFVVSFKFSSNVEGHLIRSESQRAISVLTTSSQGLQGHLRLDSSADF 324
           IVWNMN NTHI PE+VVSFK SS  EG L+ S+++  I  + ++S+  +   R +SS   
Sbjct: 422 IVWNMNTNTHICPEYVVSFKVSSATEGLLLGSKTKNNIFGVNSASRSPKILSRSESS--- 478

Query: 325 GDVSHPVSDSGGSQGKAPSTSSSTPRAPKSPWMPFPMLFASISNKVSPKVMEQISNQYEL 384
                   D+G         +S + R P SP MPFP+L  ++ NKVS K ME I+  Y  
Sbjct: 479 ------TVDTG--------IASGSRRGPTSPSMPFPVLIDALKNKVSAKDMEVINMHYLQ 524

Query: 385 FRAKKVNRDDFVKKLRLIVGDD-LLRSTITALQCKIP 420
           FRAK++ RDDF KKLRLIV DD LLR+TI  LQ K+P
Sbjct: 525 FRAKRMTRDDFAKKLRLIVRDDALLRATIVGLQSKMP 561

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	450
TAIR|locus:2031700	589	RCD1 "RADICAL-INDUCED CELL DEA	0.855	0.653	0.437	5.5e-77
TAIR|locus:2062471	568	SRO1 "similar to RCD one 1" [A	0.824	0.653	0.434	2.6e-70
TAIR|locus:2028879	323	SRO2 "similar to RCD one 2" [A	0.38	0.529	0.396	3.2e-41
TAIR|locus:2154084	309	SRO5 "similar to RCD one 5" [A	0.335	0.488	0.363	3.2e-31
TAIR|locus:2016159	305	SRO3 "similar to RCD one 3" [A	0.466	0.688	0.348	2.7e-29
TAIR|locus:2100357	316	SRO4 "similar to RCD one 4" [A	0.257	0.367	0.367	1.9e-19
UNIPROTKB|E1BQC5	1636	PARP14 "Uncharacterized protei	0.355	0.097	0.247	2.6e-09
UNIPROTKB|F1PEU2	686	PARP15 "Uncharacterized protei	0.328	0.215	0.234	2.2e-06
UNIPROTKB|B7ZL48	375	PARP15 "Poly [ADP-ribose] poly	0.342	0.410	0.225	4.9e-06
UNIPROTKB|C9J7L3	483	PARP15 "Poly [ADP-ribose] poly	0.342	0.318	0.225	7.7e-06

TAIR|locus:2031700 RCD1 "RADICAL-INDUCED CELL DEATH1" [Arabidopsis thaliana (taxid:3702)]

 Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
 Identities = 180/411 (43%), Positives = 238/411 (57%)

Query:    25 NIKLQLEIDIAGLDQSKL--KECSGES-NAFIKQIQIAPKPASNKYVVEVEDSCNRKPDA 81
             +IKL+LEID+ G +  +L  +ECS ES +  +  + +A + ++  Y    EDSC+RK +A
Sbjct:   190 DIKLRLEIDVNGGETPRLNLEECSDESGDNMMDDVPLAQRSSNEHYDEATEDSCSRKLEA 249

Query:    82 KLDETTGQNQNTKTXXXXXXXXXXXXXXXXXXRSMFLMGMSPSSGVDILDVQRCSSASLL 141
              + +    ++                      + MF +G +    V +LDV R SS    
Sbjct:   250 AVSKW---DETDAIVVSGAKLTGSEVLDKDAVKKMFAVGTASLGHVPVLDVGRFSSEIAE 306

Query:   142 ARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHL 201
             AR  LFQKQ+EIT K RGDANVRYAWL   +  LS ++M GLG  GA   KS YG+G+HL
Sbjct:   307 ARLALFQKQVEITKKHRGDANVRYAWLPAKREVLSAVMMQGLGVGGAFIRKSIYGVGIHL 366

Query:   202 AAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTK-QFHPSSEDFDSGVDDLQN 260
              AA CP  SA Y DVDENGVR+MVLCRVIMGNME L  G K QF    E++D+GVDD+++
Sbjct:   367 TAADCPYFSARYCDVDENGVRYMVLCRVIMGNME-LLRGDKAQFFSGGEEYDNGVDDIES 425

Query:   261 PRHYIVWNMNMNTHIFPEFVVSFKFSS--NVEGHLIRSESQRAISVLTTSSQGLQGHLRL 318
             P++YIVWN+NMNTHIFPEFVV FK S+  N EG+LI       ++        L+G   L
Sbjct:   426 PKNYIVWNINMNTHIFPEFVVRFKLSNLPNAEGNLIAKRDNSGVT--------LEGPKDL 477

Query:   319 DSSADFGDVSHPVSDSGGSQGXXXXXXXXXXXXXXXXWMPFPMLFASISNKVSPKVMEQI 378
                 +        S+ G                    WMPFP LFA+IS+KV+   M  I
Sbjct:   478 PPQLE--------SNQGARGSGSANSVGSSTTRPKSPWMPFPTLFAAISHKVAENDMLLI 529

Query:   379 SNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKIPSKREVGEVK 429
             +  Y+  R KK+ R +FV+KLR+IVGDDLLRSTIT LQ +  SK   G ++
Sbjct:   530 NADYQQLRDKKMTRAEFVRKLRVIVGDDLLRSTITTLQNQPKSKEIPGSIR 580

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006979 "response to oxidative stress" evidence=IGI

GO:0000303 "response to superoxide" evidence=RCA;IMP

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;IMP

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;IMP

GO:0010193 "response to ozone" evidence=IMP

GO:0042542 "response to hydrogen peroxide" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0012501 "programmed cell death" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0009651 "response to salt stress" evidence=RCA;IMP

GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IMP

GO:0006809 "nitric oxide biosynthetic process" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0010102 "lateral root morphogenesis" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009751 "response to salicylic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2062471 SRO1 "similar to RCD one 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 172/396 (43%), Positives = 232/396 (58%)

Query:    26 IKLQLEIDI-AG-LDQSKLKECSGESNAFIKQIQIAPKPASNKYVVEVEDSCNRKPDAKL 83
             IKL +EID+ +G L +  L   + ES   +   Q   + ++       EDSC+R+    L
Sbjct:   189 IKLHIEIDVNSGELPRLNLNVVTDESGDNMDDFQAVQRSSNGPNDEASEDSCSRE----L 244

Query:    84 DETTGQNQNTKTXXXXXXXXXXXXXXXXXXRSMFLMGMSPSSGVDILDVQRCSSASLLAR 143
             D+   +   T+T                  + MF +G +    V+ LDV + SS    AR
Sbjct:   245 DDAVEKWDKTETDRFSGVKPAEEELDKDAVKQMFALGAATLGHVESLDVYQFSSEIAKAR 304

Query:   144 FELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAA 203
               LFQKQ +IT K RGDAN+RYAW+   K  LS ++M+GLG  GA   KS YG+GVH  A
Sbjct:   305 LSLFQKQADITKKHRGDANIRYAWVPAKKEVLSAVMMHGLGVGGAFIKKSMYGVGVH--A 362

Query:   204 ASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRH 263
             A+CP  SA Y D+D+NGVRHMVLCRVIMGNMEPL     Q+    E++D+GVDD+++P+H
Sbjct:   363 ANCPYFSARYCDIDDNGVRHMVLCRVIMGNMEPLRGDNTQYFTGGEEYDNGVDDVESPKH 422

Query:   264 YIVWNMNMNTHIFPEFVVSFKFS-SNVEGHLI-RSESQRAISVLTTSSQGLQGHLRLDSS 321
             Y++WNMNMNTHI+PEFVVSFK S  N EG+++  ++S+   S LT   +G +G      S
Sbjct:   423 YLIWNMNMNTHIYPEFVVSFKLSIPNAEGNILPTTQSRHESSGLTL--EGPKG----SPS 476

Query:   322 ADFGDVSHPVSDSGGSQGXXXXXXXXXXXXXXXXWMPFPMLFASISNKVSPKVMEQISNQ 381
              + G VS+     GGS G                 MPFP+LF +IS+K++ K M+ I   
Sbjct:   477 NEPGRVSN-----GGS-GSEKNSSSSRRPRSPI--MPFPLLFKAISSKIARKDMDLIIAG 528

Query:   382 YELFRAKKVNRDDFVKKLRLIVGDD-LLRSTITALQ 416
             Y+  R KKV+R +F K L +IVGDD LL STIT LQ
Sbjct:   529 YQELREKKVSRKEFYKTLSMIVGDDDLLISTITGLQ 564

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0010102 "lateral root morphogenesis" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=IMP

TAIR|locus:2028879 SRO2 "similar to RCD one 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
 Identities = 71/179 (39%), Positives = 111/179 (62%)

Query:   114 RSMFLMGMSP-SSGVDILDVQRCSSA---SLLARFELFQKQLE-ITNKCRGDANVRYAWL 168
             ++  L GM   SS   I+ + + SS    +  A+F  F+   + +  K  GDANV+Y W 
Sbjct:    59 KTCLLSGMGVVSSDTTIVTISKNSSERGITTRAKFLAFRIFTDAVARKHGGDANVKYGWY 118

Query:   169 ATSKGALSTMIMYGLGHCGASTTKS---TYGIGVHLAAASCPDTSASYTDVDENGVRHMV 225
             A S+  +  +I YG  +      ++   ++GIG+HL  + C   +AS T+ DE G+R+++
Sbjct:   119 AGSRDEIQRIISYGFSNRDVGKFENDGGSHGIGIHLVPSKCSLLAASATEQDEEGLRYLL 178

Query:   226 LCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFK 284
             LCRVI+G  E +  G+KQ +PSS +FDSGVDDL NPR+Y++W+ NMN+ I P ++VSF+
Sbjct:   179 LCRVILGKPEIIISGSKQSYPSSAEFDSGVDDLHNPRNYVIWSCNMNSCILPSYIVSFR 237

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2154084 SRO5 "similar to RCD one 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 3.2e-31, Sum P(2) = 3.2e-31
 Identities = 56/154 (36%), Positives = 90/154 (58%)

Query:   137 SASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYG 196
             S + L  F++FQ+ +++ +   G A V+Y W + SK  L T+  YG           ++G
Sbjct:    82 SRAKLKTFQVFQEAVQMKHGGDGGAKVKYGWCSVSKHELKTIFEYGFSE--PLRNDGSFG 139

Query:   197 IGVHLAAASCP-DTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGV 255
              G++L+  + P D         E+G+R ++LCRV++G  E +  G+ +  PSS +FDSGV
Sbjct:   140 RGLYLSPDNSPLDCLKDSASESEDGMRFLLLCRVLLGKSEIVPQGSTRSCPSSPEFDSGV 199

Query:   256 DDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNV 289
             DDL + + YIVW+ +MNTH+ PEF+V  K   N+
Sbjct:   200 DDLVSTKKYIVWSTHMNTHVLPEFLVCIKAPFNL 233

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0072593 "reactive oxygen species metabolic process" evidence=IMP

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2016159 SRO3 "similar to RCD one 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 78/224 (34%), Positives = 130/224 (58%)

Query:   114 RSMFLMGM-SPSSGVDILDVQRCSSASLL---ARFELFQKQLE-ITNKCRGDANVRYAWL 168
             ++ FL GM S ++   I+ V++  +  L+   A+F +F+   E +  K  G AN+RY W 
Sbjct:    51 KNCFLSGMGSFATETTIVTVRKILTQRLITTKAKFAVFKLFTEAMKRKNNGYANIRYGWY 110

Query:   169 ATSKGALSTMIMYGLGHCGASTTKS---TYGIGVHLAAASCPDTSASYTDVDENGVRHMV 225
             + SK  +  +I YG  +      ++   ++G+G+HL        +A   + DE G+++++
Sbjct:   111 SGSKEEIDRVITYGFSNREIKKVENDVGSHGVGIHLVHHRYSLAAALVGEGDEEGIKNIL 170

Query:   226 LCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKF 285
             LCRVI+G  E +  G+KQ +PSS  FDSGVD+L+NPR Y++W+ NMN++I P ++VSFK 
Sbjct:   171 LCRVILGKPEQIVTGSKQSYPSSNQFDSGVDNLENPRKYVIWSCNMNSYILPTYIVSFK- 229

Query:   286 SSNVEGHLIRSESQRA-----ISVLTTSSQGLQGHLRLDSSADF 324
             S  + G + R+ S        +S+L+ S    + +L L S  DF
Sbjct:   230 SHLLRGLIGRARSPCVSFSVLMSILSKSLDAARMNLILTSYDDF 273

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2100357 SRO4 "similar to RCD one 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
 Identities = 47/128 (36%), Positives = 67/128 (52%)

Query:   161 ANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCP-DTSASYTDVDEN 219
             A V+Y      K  L  ++MYG  +     +          A   C  D S+S    +E+
Sbjct:   122 ARVKYGCCGVEKEELKAILMYGFSNNALCLSPDN-------APLQCMIDPSSS---CNED 171

Query:   220 GVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEF 279
             G+  ++  R+IMG  E +   T Q +PSS +FDSGVD L +P  YI+W+ +MNTH+ PEF
Sbjct:   172 GISFLLFSRIIMGKSEVVC-STSQSYPSSMEFDSGVDSLTSPNKYIIWSTHMNTHVLPEF 230

Query:   280 VVSFKFSS 287
             VV  K  S
Sbjct:   231 VVCIKTPS 238

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

UNIPROTKB|E1BQC5 PARP14 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 173 (66.0 bits), Expect = 2.6e-09, P = 2.6e-09
 Identities = 42/170 (24%), Positives = 86/170 (50%)

Query:   119 MGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTM 178
             +  SPS  + I  ++R  + SL   +++  K+ ++ +K   ++N ++ +  TS  +L+ +
Sbjct:  1470 LNTSPSLNLKIEKIERVQNPSLWKAYQI--KKCQMDDKNGNNSNEKFLFHGTSAESLTFI 1527

Query:   179 IMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEP-- 236
               +G     A    + YG G + A  +    + +Y+  D NG +HM L RV++G      
Sbjct:  1528 NNHGFNRSYAGMHAAQYGNGTYFAVNASYSANDTYSKPDANGKKHMYLARVLVGQYSQGT 1587

Query:   237 ---LFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSF 283
                + P  K    + + FDS  D++ NP  +I++N   +   +PE++++F
Sbjct:  1588 QGAITPAAKNVGNTVDLFDSSTDNVNNPSMFIIFN---DIQAYPEYLITF 1634

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

UNIPROTKB|F1PEU2 PARP15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 142 (55.0 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 37/158 (23%), Positives = 78/158 (49%)

Query:   132 VQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTT 191
             ++R  +  L   +++ +K ++I N  R   N R  +  T   ++  +  +G     A   
Sbjct:   533 IERIQNVCLWQSYQIKKKHMDIKNGYRD--NERVLFHGTDADSVPYVNQHGFNRSYAGKN 590

Query:   192 KSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVI-----MGNMEPLFPGTKQFHP 246
              + YG G + A  +    +  Y+  D NG +H+ + RV+     +G+   + P +K  H 
Sbjct:   591 AAAYGKGTYFAVDARYSANDIYSRPDSNGRKHIYVVRVLTGVYTLGHAGLVTPPSKNPHN 650

Query:   247 SSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFK 284
              ++ FDS  +D Q+P  ++V++ N     +PE++++F+
Sbjct:   651 PTDLFDSVTNDTQHPNLFVVFSDNQ---AYPEYLITFR 685

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

UNIPROTKB|B7ZL48 PARP15 "Poly [ADP-ribose] polymerase 15" [Homo sapiens (taxid:9606)]

 Score = 135 (52.6 bits), Expect = 4.9e-06, P = 4.9e-06
 Identities = 37/164 (22%), Positives = 78/164 (47%)

Query:   125 SGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLG 184
             S   I  ++R  +A L   +++ ++Q++I N  +   N R  +  T   ++  +  +G  
Sbjct:   215 SSYAIEKIERIQNAFLWQSYQVKKRQMDIKNDHKN--NERLLFHGTDADSVPYVNQHGFN 272

Query:   185 HCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEP-----LFP 239
                A     +YG G + A  +      +Y+  D NG +HM + RV+ G         + P
Sbjct:   273 RSCAGKNAVSYGKGTYFAVDASYSAKDTYSKPDSNGRKHMYVVRVLTGVFTKGRAGLVTP 332

Query:   240 GTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSF 283
               K  H  ++ FDS  ++ ++P+ ++V+    +   +PE++++F
Sbjct:   333 PPKNPHNPTDLFDSVTNNTRSPKLFVVF---FDNQAYPEYLITF 373

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

UNIPROTKB|C9J7L3 PARP15 "Poly [ADP-ribose] polymerase 15" [Homo sapiens (taxid:9606)]

 Score = 135 (52.6 bits), Expect = 7.7e-06, P = 7.7e-06
 Identities = 37/164 (22%), Positives = 78/164 (47%)

Query:   125 SGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLG 184
             S   I  ++R  +A L   +++ ++Q++I N  +   N R  +  T   ++  +  +G  
Sbjct:   323 SSYAIEKIERIQNAFLWQSYQVKKRQMDIKNDHKN--NERLLFHGTDADSVPYVNQHGFN 380

Query:   185 HCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEP-----LFP 239
                A     +YG G + A  +      +Y+  D NG +HM + RV+ G         + P
Sbjct:   381 RSCAGKNAVSYGKGTYFAVDASYSAKDTYSKPDSNGRKHMYVVRVLTGVFTKGRAGLVTP 440

Query:   240 GTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSF 283
               K  H  ++ FDS  ++ ++P+ ++V+    +   +PE++++F
Sbjct:   441 PPKNPHNPTDLFDSVTNNTRSPKLFVVF---FDNQAYPEYLITF 481

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.2	LOW CONFIDENCE prediction!
3rd Layer	2.4.2.30	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00290239 hypothetical protein (624 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	450
pfam12174	70	pfam12174, RST, RCD1-SRO-TAF4 (RST) plant domain	8e-26
pfam00644	206	pfam00644, PARP, Poly(ADP-ribose) polymerase catal	1e-06

>gnl|CDD|204843 pfam12174, RST, RCD1-SRO-TAF4 (RST) plant domain

 Score = 99.3 bits (248), Expect = 8e-26
 Identities = 36/69 (52%), Positives = 50/69 (72%)

Query: 350 RAPKSPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLR 409
           R P SPWMPFPMLF+ +S  +   +M  + + YE  R  K++R++FV+KLR+IVGD LL+
Sbjct: 2   RRPSSPWMPFPMLFSILSKHLPSDIMLLLQHHYEKLRRNKISREEFVRKLRIIVGDKLLK 61

Query: 410 STITALQCK 418
           STI+ LQ K
Sbjct: 62  STISKLQQK 70

This domain is found in plant RCD1, SRO and TAF4 proteins, hence its name of RST. It is required for interaction with multiple plant transcription factors. Radical-Induced Cell Death1 (RCD1) is an important regulator of stress and hormonal and developmental responses in Arabidopsis thaliana, as is its closest homologue, SRO1 - Similar To RCD-One1. TBP-Associated Factor 4 (TAF4) and TAF4-b are components of the transcription initiation factor complex TFIID. Length = 70

>gnl|CDD|216040 pfam00644, PARP, Poly(ADP-ribose) polymerase catalytic domain

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 34/196 (17%), Positives = 63/196 (32%), Gaps = 44/196 (22%)

Query: 119 MGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTM 178
              +    + IL++ R        RF+            +   N R  W  +     + +
Sbjct: 26  HDPTHGGPLFILEIFRVQREGEWDRFQPH----------KKLRNRRLLWHGSRLTNFAGI 75

Query: 179 IMYGL--GHCGASTTKSTYGIGVHLAAASCPDTSASYT-DVDENGVRHMVLCRVIMGNME 235
           +  GL      A  T   +G G++ A       SA+Y    + +G   M+L  V +G+M 
Sbjct: 76  LSQGLRIAPPEAPVTGYMFGKGIYFA--DDASKSANYCPTDEAHGSGLMLLSEVALGDMN 133

Query: 236 PLF---------PGTK----------QFHPSSEDFDSGV-------DDLQNPRHYIVWNM 269
            L          PG            +     +    G          +     Y+V+N 
Sbjct: 134 ELTKADYAEKLPPGKHSVKGLGKTAPEDFVWLDGVPLGKPVATGYDSSVLLYNEYVVYN- 192

Query: 270 NMNTHIFPEFVVSFKF 285
                + P++++  KF
Sbjct: 193 --VNQVRPKYLLEVKF 206

Poly(ADP-ribose) polymerase catalyzes the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically active. Length = 206

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	450
cd01438	223	tankyrase_like Tankyrases interact with the telome	100.0
PF00644	206	PARP: Poly(ADP-ribose) polymerase catalytic domain	100.0
cd01439	121	TCCD_inducible_PARP_like Poly(ADP-ribose) polymera	100.0
cd01437	347	parp_like Poly(ADP-ribose) polymerase (parp) catal	99.96
PF12174	70	RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: I	99.96
PLN03124	643	poly [ADP-ribose] polymerase; Provisional	99.91
PLN03123	981	poly [ADP-ribose] polymerase; Provisional	99.88
PLN03122	815	Poly [ADP-ribose] polymerase; Provisional	99.86
cd01341	137	ADP_ribosyl ADP_ribosylating enzymes catalyze the	99.78
KOG1037	531	consensus NAD+ ADP-ribosyltransferase Parp, requir	98.7
PF12509	165	DUF3715: Protein of unknown function (DUF3715); In	89.03
PF12767	252	SAGA-Tad1: Transcriptional regulator of RNA polII,	88.8
KOG0034	187	consensus Ca2+/calmodulin-dependent protein phosph	85.36

>cd01438 tankyrase_like Tankyrases interact with the telomere reverse transcriptase complex (TERT)

Probab=100.00  E-value=1.7e-38  Score=304.65  Aligned_cols=177  Identities=18%  Similarity=0.290  Sum_probs=143.9

Q ss_pred             EEEEcCCCChhHHHHHHHHHccCCC----------CCCCcEEEEEEecCHhHHHHHHHHHHHHHHHhhcCCCCceEEEee
Q 013071           99 NKSVVVDDKLDSDSVRSMFLMGMSP----------SSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWL  168 (450)
Q Consensus        99 ~~i~L~~~s~EY~~V~~~F~~g~~~----------~~~~~I~kIeRIqN~~l~aryq~fKk~m~~~~k~~G~~Ner~LFH  168 (450)
                      .+++|.|++.||+.|++.|.+|+.+          +.+++|++|+||||+.||.+|+.+|++|+.  +.....||++|||
T Consensus        17 ~~~~l~p~~~e~~~v~~~~~~t~~~~~~~~~~~~~~~~~~I~kI~RIQN~~Lw~~y~~kk~~~~~--~~~~~~ne~~LfH   94 (223)
T cd01438          17 ILLDLAPDDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNIIRIQKVVNKKLRERYCHRQKEIAE--ENHNHHNERMLFH   94 (223)
T ss_pred             eEEEecCCCchHHHHHHHHHhhccccccCcccccccccccEEEEEecCCHHHHHHHHHHHHHHHH--hhCCCcceEEEee
Confidence            4789999999999999999999874          235799999999999999999999888874  3445689999999


Q ss_pred             cCChhhHHHHhhccCCCCCCCCCCCcccceeEeccCCCCCccCCccccCC---------CC-----cEEEEEEeeccCCc
Q 013071          169 ATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDE---------NG-----VRHMVLCRVIMGNM  234 (450)
Q Consensus       169 GTs~~~i~~I~~~GFd~~~a~~~g~~yG~GIYFAp~n~s~kS~~Y~~~d~---------~G-----~r~MfLcRVllGk~  234 (450)
                      ||+  .++.||++|||++.+. +|+|||+||||| ++++ +|++||....         ++     .++||||||++|++
T Consensus        95 Gt~--~~~~I~~~GFd~r~~~-~g~~fGkGiYFA-~~as-kS~~Y~~~~~~~~~~p~~~~~~~~~~~~~MfLcrVlLGk~  169 (223)
T cd01438          95 GSP--FINAIIHKGFDERHAY-IGGMFGAGIYFA-ENSS-KSNQYVYGIGGGTGCPTHKDRSCYVCHRQMLFCRVTLGKS  169 (223)
T ss_pred             cCc--chhHHHHhCCCccccc-cCceeeeeeeec-cchh-hhccccccccccccCcccccccccccceeEEEEEEEecce
Confidence            997  4679999999998765 589999999999 6766 5999986421         11     47899999999998


Q ss_pred             cccCCCCCCCCCCCCCCCccccCCC----CCcEEEEEeCCCCccccceeEEEEEec
Q 013071          235 EPLFPGTKQFHPSSEDFDSGVDDLQ----NPRHYIVWNMNMNTHIFPEFVVSFKFS  286 (450)
Q Consensus       235 ~~v~p~sk~~~ps~~~YDSvVd~~~----nP~~yVVy~~~mNtqiyPeYLItyk~~  286 (450)
                      ....+...-. +...+|||+++...    ..+|||||+.+   ||||+|||+|+..
T Consensus       170 ~~~~~~~~~~-~~P~G~dSv~g~Ps~~~~~~~EfVVyd~~---Q~YPeYLI~y~~~  221 (223)
T cd01438         170 FLQFSAMKMA-HAPPGHHSVIGRPSVNGLAYAEYVIYRGE---QAYPEYLITYQIV  221 (223)
T ss_pred             eeccCCcccC-CCCCCCcceEcCCCCCCcccCEEEEECCC---cEeeEEEEEEEee
Confidence            6554443221 22347999998543    24799999976   9999999999864

Tankyrase 1 poly-ADP-ribosylates Telomere Repeat Binding Factor 1 (TRF1) while Tankyrase 2 can poly-ADP-ribosylate itself or TRF1. The tankyrases also contain multiple ankyrin repeats that mediate protein-protein interaction (binding TRF1 and insulin-responsive aminopeptidase) and may function as a complex. Overexpression of Tank1 promotes increased telomere length when overexpressed, while overexpressed Tank2 has been shown to promote PARP cleavage- independent cell death (necrosis).

>PF00644 PARP: Poly(ADP-ribose) polymerase catalytic domain; InterPro: IPR012317 Poly(ADP-ribose) polymerases (PARP) are a family of enzymes present in eukaryotes, which catalyze the poly(ADP-ribosyl)ation of a limited number of proteins involved in chromatin architecture, DNA repair, or in DNA metabolism, including PARP itself

Probab=100.00  E-value=5.4e-35  Score=277.11  Aligned_cols=172  Identities=26%  Similarity=0.454  Sum_probs=138.9

Q ss_pred             eEEEEcCCCChhHHHHHHHHHccCCCCC--CCcEEEEEEecCHhHHHHHHHHHHHHHHHhhcCCCCceEEEeecCChhhH
Q 013071           98 VNKSVVVDDKLDSDSVRSMFLMGMSPSS--GVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGAL  175 (450)
Q Consensus        98 ~~~i~L~~~s~EY~~V~~~F~~g~~~~~--~~~I~kIeRIqN~~l~aryq~fKk~m~~~~k~~G~~Ner~LFHGTs~~~i  175 (450)
                      +.+++|.++++||+.|+++|.++|++..  ..+|.+|+||+|+.+|++|+.+++          ..|+++|||||+.+++
T Consensus         3 ~~l~~l~~~s~ey~~I~~~f~~~~~~~~~~~~~I~~I~~i~~~~~~~~f~~~~~----------~~n~~~L~HGt~~~~~   72 (206)
T PF00644_consen    3 CELVPLEPDSEEYKEIEKYFKKTWKPVHKYKPKIKKIFRIQNPSLWERFEEKKK----------EGNERLLFHGTSAENI   72 (206)
T ss_dssp             EEEEEEETTSHHHHHHHHHHHHTSTSTTTEEEEEEEEEEEEEHHHHHHHHHHHH----------SSSEEEEEEEETGGGH
T ss_pred             CEEEEcCCCCHHHHHHHHHHHhHCCCCCCCCCEEEEEEEEcChhHHHHHHHHHh----------cCCceEEeCCCChhhc
Confidence            4578899999999999999999998643  489999999999999999988764          3589999999999999


Q ss_pred             HHHhhccC--CCCCCCCCCCcccceeEeccCCCCCccCCcccc-CCCCcEEEEEEeeccCCccccCCCCCCCCCCCCCCC
Q 013071          176 STMIMYGL--GHCGASTTKSTYGIGVHLAAASCPDTSASYTDV-DENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFD  252 (450)
Q Consensus       176 ~~I~~~GF--d~~~a~~~g~~yG~GIYFAp~n~s~kS~~Y~~~-d~~G~r~MfLcRVllGk~~~v~p~sk~~~ps~~~YD  252 (450)
                      .+||++||  +.+.++.+|++||+||||| .++ .+|+.||.. +.+|.++||||+|++|++..+..... ......+||
T Consensus        73 ~~I~~~G~~~~~~~~~~~g~~fG~GiYfs-~~~-s~s~~Y~~~~~~~g~~~~llc~V~lG~~~~~~~~~~-~~~~~~g~~  149 (206)
T PF00644_consen   73 CSILRNGFKIDPRKASRNGGMFGKGIYFS-DNS-SKSAQYSKPSDSNGERFMLLCRVALGKPYELKNDNP-MTSPPPGYD  149 (206)
T ss_dssp             HHHHHHSS---TTTSCGGCSTTSSSEEEB-SSH-HHHHTTSTSESSSSEEEEEEEEEEECSEEEESSCCT-GSSGCTTES
T ss_pred             cchhcCCCccCccccccCCceeeeEEEeC-cch-hhhcccCCCccCCcceeeeEEEEEeccceeeccCcc-cccccCCcc
Confidence            99999999  6777777899999999999 454 479999997 78899999999999999543321111 111122344


Q ss_pred             ccc---------------------------cCCCCCcEEEEEeCCCCccccceeEEEEEe
Q 013071          253 SGV---------------------------DDLQNPRHYIVWNMNMNTHIFPEFVVSFKF  285 (450)
Q Consensus       253 SvV---------------------------d~~~nP~~yVVy~~~mNtqiyPeYLItyk~  285 (450)
                      |+.                           +...++++||||+.+   |+||+|||+|+.
T Consensus       150 sv~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~eyVVy~~~---q~~p~YLi~y~~  206 (206)
T PF00644_consen  150 SVKGVGSKTPEDTIDEDGVPSGKGYVSEYDGSSLNPNEYVVYDNS---QVYPEYLITYKF  206 (206)
T ss_dssp             EEEECESEEEGGEEEETTETTSSEEESCEESSSSSCSEEEESSGG---GEEEEEEEEEEE
T ss_pred             eecCCCccCCccccccCCCCCCCCccCccCCCccCCCEEEEEccc---ceeeEEEEEEEC
Confidence            432                           223578999999966   999999999984

PARP, also known as poly(ADP-ribose) synthetase and poly(ADP-ribose) transferase, transfers the ADP-ribose moiety from its substrate, nicotinamide adenine dinucleotide (NAD), to carboxylate groups of aspartic and glutamic residues. Whereas some PARPs might function in genome protection, others appear to play different roles in the cell, including telomere replication and cellular transport. PARP-1 is a multifunctional enzyme. The polypeptide has a highly conserved modular organisation consisting of an N-terminal DNA-binding domain, a central regulating segment, and a C-terminal or F region accommodating the catalytic centre. The F region is composed of two parts: a purely alpha-helical N- terminal domain (alpha-hd), and the mixed alpha/beta C-terminal catalytic domain bearing the putative NAD binding site. Although proteins of the PARP family are related through their PARP catalytic domain, they do not resemble each other outside of that region, but rather, they contain unique domains that distinguish them from each other and hint at their discrete functions. Domains with which the PARP catalytic domain is found associated include zinc fingers, SAP, ankyrin, BRCT, Macro, SAM, WWE and UIM domains [, , ]. The alpha-hd domain is about 130 amino acids in length and consists of an up-up-down-up-down-down motif of helices. It is thought to relay the activation signal issued on binding to damaged DNA [, ]. The PARP catalytic domain is about 230 residues in length. Its core consists of a five-stranded antiparallel beta-sheet and four-stranded mixed beta-sheet. The two sheets are consecutive and are connected via a single pair of hydrogen bonds between two strands that run at an angle of 90 degrees. These central beta-sheets are surrounded by five alpha-helices, three 3(10)-helices, and by a three- and a two-stranded beta-sheet in a 37-residue excursion between two central beta-strands [, ]. The active site, known as the 'PARP signature' is formed by a block of 50 amino acids that is strictly conserved among the vertebrates and highly conserved among all species. The 'PARP signature' is characteristic of all PARP protein family members. It is formed by a segment of conserved amino acid residues formed by a beta-sheet, an alpha-helix, a 3(10)-helix, a beta-sheet, and an alpha-helix [].; GO: 0003950 NAD+ ADP-ribosyltransferase activity; PDB: 2PQF_F 4F0D_A 1PAX_A 1EFY_A 1A26_A 2PAW_A 4PAX_A 3PAX_A 2PAX_A 3P0N_A ....

>cd01439 TCCD_inducible_PARP_like Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA

Probab=100.00  E-value=3.3e-35  Score=258.94  Aligned_cols=114  Identities=23%  Similarity=0.446  Sum_probs=101.2

Q ss_pred             EEeecCChhhHHHHhhccCCCCCCCCCCCcccceeEeccCCCCCccCCccccCCC--CcEEEEEEeeccCCccccC----
Q 013071          165 YAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDEN--GVRHMVLCRVIMGNMEPLF----  238 (450)
Q Consensus       165 ~LFHGTs~~~i~~I~~~GFd~~~a~~~g~~yG~GIYFAp~n~s~kS~~Y~~~d~~--G~r~MfLcRVllGk~~~v~----  238 (450)
                      +|||||+.++++.||++||+++.++.++++||+||||| .+++ +|++||..+++  |.++|||||||+|+++...    
T Consensus         1 ~LfHGt~~~~~~~I~~~GF~~~~~g~~~~~~G~GiYFA-~~~s-~S~~Y~~~~~~~~g~~~mfL~rVl~G~~~~~~~~~~   78 (121)
T cd01439           1 LLFHGTSADAVEAICRHGFDRRFCGKHGTMYGKGSYFA-KNAS-YSHQYSKKSPKADGLKEMFLARVLTGDYTQGHPGYR   78 (121)
T ss_pred             CcccccChhhHHHHHHccCCCccCCCCCCccCCeeecc-cChh-hhhcccccCcCCCCcEEEEEEEEEecceecCCCccc
Confidence            48999999999999999999999988899999999999 4655 69999987654  8999999999999987554    


Q ss_pred             -CCCCCCCCCCCCCCccccCCCCCcEEEEEeCCCCccccceeEEEE
Q 013071          239 -PGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSF  283 (450)
Q Consensus       239 -p~sk~~~ps~~~YDSvVd~~~nP~~yVVy~~~mNtqiyPeYLIty  283 (450)
                       ||.++..+++++|||+||++.+|++||||+++   ||||||||+|
T Consensus        79 ~pP~~~~~~~~~~yDS~vd~~~~p~~~Vvf~~~---q~yPeYlI~y  121 (121)
T cd01439          79 RPPLKPSGVELDRYDSCVDNVSNPSIFVIFSDV---QAYPEYLITY  121 (121)
T ss_pred             CCCCccCCCCCCCccceeCCCCCCCEEEEEeCC---ccceeEEEEC
Confidence             44455567789999999999999999999976   9999999997

Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) causes pleotropic effects in mammalian species through modulating gene expression. TCCD indicible PARP (TiPARP) is a target of TCDD that may contribute to multiple responses to TCDD by modulating protein function through poly ADP-ribosylation

>cd01437 parp_like Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA

Probab=99.96  E-value=3e-29  Score=256.01  Aligned_cols=254  Identities=18%  Similarity=0.230  Sum_probs=171.9

Q ss_pred             hhhhhccCCccccccceEE-EEEeccccc--ccchhhhccchhhhhcccccccCCCCCccc-----------------ee
Q 013071           11 FTLMVMNHTSVHKLNIKLQ-LEIDIAGLD--QSKLKECSGESNAFIKQIQIAPKPASNKYV-----------------VE   70 (450)
Q Consensus        11 ~~~~~~~~~~~~~~eikl~-~e~~~n~~~--~~kl~~~s~~s~~~~k~~~i~~~~~~~~~~-----------------ve   70 (450)
                      .-|+.+++.+.++..--|. |+.-++...  ..++.+.|.+.+.+++|-+...+|.  ..|                 ++
T Consensus        35 mPLGkLSk~qI~~g~~vL~~i~~~l~~~~~~~~~l~~ls~~FYtlIPh~fg~~~p~--~i~~~~~l~~k~~lle~L~die  112 (347)
T cd01437          35 MPLGKLSKNQIQKGYEVLKEIEEALKRGSSQGSQLEELSNEFYTLIPHDFGMSKPP--VIDNEELLKAKRELLEALRDIE  112 (347)
T ss_pred             CCCcccCHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCccccCCCCC--ccCCHHHHHHHHHHHHHHHHHH
Confidence            3445555555555442221 111223322  3679999999999999997766652  111                 11


Q ss_pred             eecccccCCCCccccCCCCCCCCCCce-eEEEEcCCCChhHHHHHHHHHccCCC--CCCCcEEEEEEecCHhHHHHHHHH
Q 013071           71 VEDSCNRKPDAKLDETTGQNQNTKTSL-VNKSVVVDDKLDSDSVRSMFLMGMSP--SSGVDILDVQRCSSASLLARFELF  147 (450)
Q Consensus        71 v~~s~~~k~~~~~~e~i~~W~~~~~~~-~~~i~L~~~s~EY~~V~~~F~~g~~~--~~~~~I~kIeRIqN~~l~aryq~f  147 (450)
                      +.-+.....  . ....+.-|.....+ +.+.+|+++++||+.|+++|.+|+++  .-+++|..|+||++..+|++|+.+
T Consensus       113 ~a~~l~~~~--~-~~~~~pld~~Y~~L~~~i~~L~~~s~ey~~I~~y~~~t~~~~~~~~~~V~~If~i~r~~e~~~F~~~  189 (347)
T cd01437         113 IASKLLKDD--E-DDSDDPLDANYEKLKCKIEPLDKDSEEYKIIEKYLKNTHAPTTEYTVEVQEIFRVEREGETDRFKPF  189 (347)
T ss_pred             HHHHHHhhc--c-cCCCCcchhHHHHcCeeEEECCCCChHHHHHHHHHHhcCCCCCCcceeEEEEEEecCCCchhhhHHh
Confidence            111111100  0 01111111111112 46788999999999999999999974  234899999999999999999764


Q ss_pred             HHHHHHHhhcCCCCceEEEeecCChhhHHHHhhccCCCCC--CCCCCCcccceeEeccCCCCCccCCccccCC-CCcEEE
Q 013071          148 QKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCG--ASTTKSTYGIGVHLAAASCPDTSASYTDVDE-NGVRHM  224 (450)
Q Consensus       148 Kk~m~~~~k~~G~~Ner~LFHGTs~~~i~~I~~~GFd~~~--a~~~g~~yG~GIYFAp~n~s~kS~~Y~~~d~-~G~r~M  224 (450)
                      +          ...|+++|||||+.+++.+|+++||+++.  ++.+|.|||+||||| +++ ++|++||.++. ++.++|
T Consensus       190 ~----------~~~n~~lLwHGsr~~n~~~Il~~Gl~~~~~~~~~~g~mfGkGIYFA-d~~-skS~~Y~~~~~~~~~~~m  257 (347)
T cd01437         190 K----------KLGNRKLLWHGSRLTNFVGILSQGLRIAPPEAPVTGYMFGKGIYFA-DMF-SKSANYCHASASDPTGLL  257 (347)
T ss_pred             h----------ccCCeEEEEcCCChhhHHHHHhcCCCcCccccccCCccccceEeec-Cch-HhhhhhcccCCCCCceEE
Confidence            3          13699999999999999999999999864  556789999999999 454 57999998875 789999


Q ss_pred             EEEeeccCCccccCCCCCCCCCCCCCCCccccC---------------------------------CCCCcEEEEEeCCC
Q 013071          225 VLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDD---------------------------------LQNPRHYIVWNMNM  271 (450)
Q Consensus       225 fLcRVllGk~~~v~p~sk~~~ps~~~YDSvVd~---------------------------------~~nP~~yVVy~~~m  271 (450)
                      |||+|++|++...............+|||+.+-                                 .-..+|||||+.. 
T Consensus       258 lLc~V~lG~~~~~~~~~~~~~~~p~g~~Sv~g~G~~~p~~~~~~~~~~gv~vP~G~~~~~~~~~~~~l~~nEyiVYd~~-  336 (347)
T cd01437         258 LLCEVALGKMNELKKADYMAKELPKGKHSVKGLGKTAPDPSEFEIDLDGVVVPLGKPVPSGHKTDTSLLYNEYIVYDVA-  336 (347)
T ss_pred             EEEEEecCceehhccCChhhccCCCCceeeEeccCCCCCchhheeccCCeEeeCCccccCCcCCCcccccCCeEeechh-
Confidence            999999999864332211111123466766421                                 1124799999987 


Q ss_pred             CccccceeEEEEE
Q 013071          272 NTHIFPEFVVSFK  284 (450)
Q Consensus       272 NtqiyPeYLItyk  284 (450)
                        |+.+.|||.++
T Consensus       337 --Qir~rYLv~vk  347 (347)
T cd01437         337 --QVRLKYLLEVK  347 (347)
T ss_pred             --HEEEEEEEEeC
Confidence              99999999874

Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically active. Poly(ADP-ribose)-like polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length through interactions with telomere repeat binding factor 1.

>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors

Probab=99.96  E-value=2.2e-29  Score=201.82  Aligned_cols=69  Identities=55%  Similarity=1.035  Sum_probs=67.6

Q ss_pred             CCCCCCCccHHHHHHHHhccCChhHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhHHHHHHHHHhhcc
Q 013071          350 RAPKSPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCK  418 (450)
Q Consensus       350 ~~p~sp~~~F~~L~~~l~~~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~IvGD~lL~~~i~~~q~k  418 (450)
                      |+|+|||||||+||++|+++|||++|++|+++|++||++||||+||||+||.||||++|++||+++|+|
T Consensus         2 ~~P~sp~~~F~~L~~~l~~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD~lL~s~I~~lq~k   70 (70)
T PF12174_consen    2 RRPTSPWMPFPMLFSALSKHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVGDQLLRSAIKSLQQK   70 (70)
T ss_pred             CCCCCCcccHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            569999999999999999999999999999999999999999999999999999999999999999976

>PLN03124 poly [ADP-ribose] polymerase; Provisional

Probab=99.91  E-value=1.9e-24  Score=233.91  Aligned_cols=233  Identities=21%  Similarity=0.228  Sum_probs=159.1

Q ss_pred             ccccccchhhhccchhhhhcccccccCCCCCccc-----------------eeeecccccCCCCccccCCCCCCCCCCce
Q 013071           35 AGLDQSKLKECSGESNAFIKQIQIAPKPASNKYV-----------------VEVEDSCNRKPDAKLDETTGQNQNTKTSL   97 (450)
Q Consensus        35 n~~~~~kl~~~s~~s~~~~k~~~i~~~~~~~~~~-----------------vev~~s~~~k~~~~~~e~i~~W~~~~~~~   97 (450)
                      +.....+|.+.|.+.+.+|+|-+...+|+...-|                 +|+..+.....   .....+.-+.....+
T Consensus       350 ~~~~~~~l~~lSn~FYTlIPH~FG~~~~~~~vIdt~~~lk~k~elLe~L~DIevA~~ll~~~---~~~~~~pld~~Y~~L  426 (643)
T PLN03124        350 SRSDRETLEELSGEFYTVIPHDFGFKKMRQFTIDTPQKLKHKLEMVEALGEIEIATKLLKDD---IGEQDDPLYAHYKRL  426 (643)
T ss_pred             cccchHHHHHHhcCeEEecCcccccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhc---cCCCCCcHHHHHHHc
Confidence            3334567999999999999998766655321111                 11111111110   001111111111112


Q ss_pred             -eEEEEcCCCChhHHHHHHHHHccCCC-CC--CCcEEEEEEecCHhHHHHHHHHHHHHHHHhhcCCCCceEEEeecCChh
Q 013071           98 -VNKSVVVDDKLDSDSVRSMFLMGMSP-SS--GVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKG  173 (450)
Q Consensus        98 -~~~i~L~~~s~EY~~V~~~F~~g~~~-~~--~~~I~kIeRIqN~~l~aryq~fKk~m~~~~k~~G~~Ner~LFHGTs~~  173 (450)
                       +.+.+|+++++||+.|++++..|.++ |.  +++|+.|+||++....+||+.+++          ..|.++|||||+..
T Consensus       427 ~c~i~pLd~~S~efk~I~~Yl~nT~~~th~~y~l~V~~If~V~R~~E~~rF~~~~~----------~~Nr~LLWHGSr~~  496 (643)
T PLN03124        427 NCELEPLDTDSEEFSMIAKYLENTHGQTHSGYTLEIVQIFKVSREGEDERFQKFSS----------TKNRMLLWHGSRLT  496 (643)
T ss_pred             CCeeEEcCCCCHHHHHHHHHHHhcCCCccCcCceeEEEEEEeccccchhhHHHhhc----------cCCeEEEEcCCCcc
Confidence             35678999999999999999998764 22  388999999999999999976531          25999999999999


Q ss_pred             hHHHHhhccCCC--CCCCCCCCcccceeEeccCCCCCccCCccccCC-CCcEEEEEEeeccCCcccc-CCCCCCCCCCCC
Q 013071          174 ALSTMIMYGLGH--CGASTTKSTYGIGVHLAAASCPDTSASYTDVDE-NGVRHMVLCRVIMGNMEPL-FPGTKQFHPSSE  249 (450)
Q Consensus       174 ~i~~I~~~GFd~--~~a~~~g~~yG~GIYFAp~n~s~kS~~Y~~~d~-~G~r~MfLcRVllGk~~~v-~p~sk~~~ps~~  249 (450)
                      ++.+|+++||.+  +.++.+|.|||+|||||  +.+.+|++||.+.. ++.++||||+|++|++... .+...-.. ...
T Consensus       497 N~~gILs~GLriaPpea~~~GymfGkGIYFA--d~~skSa~Yc~~~~~~~~g~llLceVaLG~~~el~~~~y~a~~-~p~  573 (643)
T PLN03124        497 NWTGILSQGLRIAPPEAPSTGYMFGKGVYFA--DMFSKSANYCYASAANPDGVLLLCEVALGDMNELLQADYNANK-LPP  573 (643)
T ss_pred             cHHHHHhccCccCCcccccccccccceeEec--chhhhhhhhhhccCCCCeeEEEEEEEecCCcchhccCcccccc-CCC
Confidence            999999999985  45667899999999999  55668999998754 5579999999999997422 11100000 012


Q ss_pred             CCCccc----------------c----------------CCCCCcEEEEEeCCCCccccceeEEEEEec
Q 013071          250 DFDSGV----------------D----------------DLQNPRHYIVWNMNMNTHIFPEFVVSFKFS  286 (450)
Q Consensus       250 ~YDSvV----------------d----------------~~~nP~~yVVy~~~mNtqiyPeYLItyk~~  286 (450)
                      +|||+.                |                .....++||||+..   ||...|||..+..
T Consensus       574 G~~S~kG~G~~~Pdp~~~~~~~dGV~VP~Gk~~~~~~~~~~L~yNEYIVYd~~---Qvr~rYLv~vkf~  639 (643)
T PLN03124        574 GKLSTKGVGRTVPDPSEAKTLEDGVVVPLGKPVESPYSKGSLEYNEYIVYNVD---QIRMRYVLQVKFN  639 (643)
T ss_pred             CceeEEeccCCCCCcccceecCCCeEeeCCccccCCCCCCccccCceEEechh---HeEEEEEEEEEEe
Confidence            333321                0                01124799999998   9999999988864

>PLN03123 poly [ADP-ribose] polymerase; Provisional

Probab=99.88  E-value=1.5e-22  Score=228.25  Aligned_cols=174  Identities=20%  Similarity=0.283  Sum_probs=134.3

Q ss_pred             eEEEEcCCCChhHHHHHHHHHccCCC-CC--CCcEEEEEEecCHhHHHHHHHHHHHHHHHhhcCCCCceEEEeecCChhh
Q 013071           98 VNKSVVVDDKLDSDSVRSMFLMGMSP-SS--GVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGA  174 (450)
Q Consensus        98 ~~~i~L~~~s~EY~~V~~~F~~g~~~-~~--~~~I~kIeRIqN~~l~aryq~fKk~m~~~~k~~G~~Ner~LFHGTs~~~  174 (450)
                      +.+.+|+++++||+.|++++..|.++ |.  +++|+.|+||.+....+||..|+..         ..|.++|||||+..+
T Consensus       767 ~~i~~L~~~s~ey~~I~~Yl~nT~~~th~~y~l~v~~IF~v~r~gE~~rf~~~~~~---------~~Nr~LLwHGSr~~N  837 (981)
T PLN03123        767 CDISPLPHDSEDYKLIEKYLLTTHAPTHTDWSLELEEVFSLEREGEFDKYAPYKEK---------LKNRMLLWHGSRLTN  837 (981)
T ss_pred             CeEEECCCCCHHHHHHHHHHHhcCCCccccccceeeEEEEecccccccchhhHhhc---------CCCceEEEcCCCccc
Confidence            35678999999999999999998764 32  3679999999999999999766421         249999999999999


Q ss_pred             HHHHhhccCCC--CCCCCCCCcccceeEeccCCCCCccCCccccC-CCCcEEEEEEeeccCCccccCCCCCCCCCCCCCC
Q 013071          175 LSTMIMYGLGH--CGASTTKSTYGIGVHLAAASCPDTSASYTDVD-ENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDF  251 (450)
Q Consensus       175 i~~I~~~GFd~--~~a~~~g~~yG~GIYFAp~n~s~kS~~Y~~~d-~~G~r~MfLcRVllGk~~~v~p~sk~~~ps~~~Y  251 (450)
                      +.+|+++||.+  +.++.+|.|||+|||||  |++++|++||.+. .++.++||||+|++|++........ ......+|
T Consensus       838 ~~gILs~GLriaPpeap~tGymfGkGIYFA--D~~SKSanYc~~~~~~~~g~llLceVaLG~~~e~~~~~~-~~~~p~g~  914 (981)
T PLN03123        838 FVGILSQGLRIAPPEAPATGYMFGKGVYFA--DLVSKSAQYCYTDRKNPVGLMLLSEVALGEIYELKKAKY-MDKPPRGK  914 (981)
T ss_pred             HHHHhhccCccCCccccccCccccceeEec--chhhhhhhhhcccCCCCceEEEEEEEecCChhhhccccc-cccCCCCc
Confidence            99999999985  56778899999999999  6677999999876 4678999999999999743211000 00001233


Q ss_pred             Cccc--------------------------------cCCCCCcEEEEEeCCCCccccceeEEEEEec
Q 013071          252 DSGV--------------------------------DDLQNPRHYIVWNMNMNTHIFPEFVVSFKFS  286 (450)
Q Consensus       252 DSvV--------------------------------d~~~nP~~yVVy~~~mNtqiyPeYLItyk~~  286 (450)
                      ||+.                                +.....++||||+..   |+...|||..+..
T Consensus       915 ~S~~g~G~~~Pd~~~~~~~~dgv~vP~Gk~~~~~~~~~~L~yNEYIVYd~~---Qvr~rYLv~vkf~  978 (981)
T PLN03123        915 HSTKGLGKTVPQESEFVKWRDDVVVPCGKPVPSKVKASELMYNEYIVYNTA---QVKLQFLLKVRFK  978 (981)
T ss_pred             eeeeecCCCCCCcccceecCCceEeeCCCCccCcccCCccccCceEEechh---HEEEEEEEEEEee
Confidence            3331                                011134799999998   9999999988764

>PLN03122 Poly [ADP-ribose] polymerase; Provisional

Probab=99.86  E-value=6.5e-22  Score=219.35  Aligned_cols=173  Identities=17%  Similarity=0.224  Sum_probs=131.5

Q ss_pred             eEEEEcCCCChhHHHHHHHHHccCCC-C---C--CCcEEEEEEecCHhHHHHHHHHHHHHHHHhhcCCCCceEEEeecCC
Q 013071           98 VNKSVVVDDKLDSDSVRSMFLMGMSP-S---S--GVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATS  171 (450)
Q Consensus        98 ~~~i~L~~~s~EY~~V~~~F~~g~~~-~---~--~~~I~kIeRIqN~~l~aryq~fKk~m~~~~k~~G~~Ner~LFHGTs  171 (450)
                      +.+.+|+++++||+.|++++..|.++ |   .  +++|+.|+||.+... .||..++          ...|.++||||++
T Consensus       591 ~~i~pLd~~S~eyk~I~~Yl~nT~~~th~~~~~y~l~v~~IF~veR~ge-~rf~~~~----------~l~NR~LLWHGSR  659 (815)
T PLN03122        591 CSISPVDKESDDYKMIVKYLEKTYEPVKVGDVSYSVSVENIFAVESSAG-PSLDEIK----------KLPNKVLLWCGTR  659 (815)
T ss_pred             ceEEEcCCCCHHHHHHHHHHHhcCCCccccCcccceeEeEEEEeccCcc-ccchhhc----------CCCCceEEeccch
Confidence            35778999999999999999999864 3   1  367999999998763 6876543          1359999999999


Q ss_pred             hhhHHHHhhccCCC--CCCCCCCCcccceeEeccCCCCCccCCccccC-CCCcEEEEEEeeccCCc--cccCCC------
Q 013071          172 KGALSTMIMYGLGH--CGASTTKSTYGIGVHLAAASCPDTSASYTDVD-ENGVRHMVLCRVIMGNM--EPLFPG------  240 (450)
Q Consensus       172 ~~~i~~I~~~GFd~--~~a~~~g~~yG~GIYFAp~n~s~kS~~Y~~~d-~~G~r~MfLcRVllGk~--~~v~p~------  240 (450)
                      .+|+.+|+++||.+  +.++.+|+|||+|||||  |++++|++||.+. .+....||||+|++|++  ++..++      
T Consensus       660 ~tN~~gILsqGLRIAPPEAPvtGYMFGKGIYFA--D~~SKSAnYC~t~~~~~~GlLlLcEVALG~~~~el~~~~~~~~~~  737 (815)
T PLN03122        660 SSNLLRHLAKGFLPAVCSLPVPGYMFGKAIVCS--DAAAEAARYGFTAVDRPEGFLVLAVASLGDEVLELTKPPEDVKSY  737 (815)
T ss_pred             hhhHHHHhhCCCccCCcccCCCCCccCCeeEec--chhhhhhhhhccccCCCcceEEEEHhhcCchHHHhhcCchhhhcc
Confidence            99999999999986  57888999999999999  7778999999865 45678999999999996  322221      


Q ss_pred             -----------CCCCCCCCC-CC-Ccc-----------c-cCCCCCcEEEEEeCCCCccccceeEEEEEec
Q 013071          241 -----------TKQFHPSSE-DF-DSG-----------V-DDLQNPRHYIVWNMNMNTHIFPEFVVSFKFS  286 (450)
Q Consensus       241 -----------sk~~~ps~~-~Y-DSv-----------V-d~~~nP~~yVVy~~~mNtqiyPeYLItyk~~  286 (450)
                                 ...+.|+.. .. |-|           . +.....++||||+..   ||...||+..+..
T Consensus       738 ~~g~~Stkg~G~~~Pdp~~~~~~~dgV~VP~Gk~~~~~~~~~~L~yNEYIVYDva---QvrirYL~~vkf~  805 (815)
T PLN03122        738 EEKKVGVKGLGRKKTDESEHFKWRDDITVPCGRLIPSEHKDSPLEYNEYAVYDPK---QVSIRFLVGVKYE  805 (815)
T ss_pred             CCCCceeeecCCCcCCCccceecCCCeEEeCCCCccCCCCCcccccCceEEEchh---HEEEEEEEEEEee
Confidence                       001111110 01 111           1 111245799999998   9999999999884

>cd01341 ADP_ribosyl ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates

Probab=99.78  E-value=1.3e-19  Score=162.86  Aligned_cols=110  Identities=20%  Similarity=0.296  Sum_probs=88.7

Q ss_pred             EEeecCChhhHHHHhhccCCCCCCCC--CCCcccceeEeccCCCCCccCCccccCCC---------------CcEEEEEE
Q 013071          165 YAWLATSKGALSTMIMYGLGHCGAST--TKSTYGIGVHLAAASCPDTSASYTDVDEN---------------GVRHMVLC  227 (450)
Q Consensus       165 ~LFHGTs~~~i~~I~~~GFd~~~a~~--~g~~yG~GIYFAp~n~s~kS~~Y~~~d~~---------------G~r~MfLc  227 (450)
                      +|||||+..++..|+++||+++.++.  ++++||+||||| ++++ +|++||..+.+               +.+.||++
T Consensus         1 ~l~HGs~~~n~~~I~~~Gl~~~~~~~~~~g~~~G~GiYfa-~~~s-~S~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~fl~   78 (137)
T cd01341           1 FLFHGSPPGNVISILKLGLRPASYGVLLNGGMFGKGIYSA-PNIS-KSNGYSVGCDGQHVFQNGKPKVCGRELCVFGFLT   78 (137)
T ss_pred             CccccCCccchHHHhhCCCCCCCccccccccccCceeeec-CChH-HhhhhhcccCCcccccccccccccccccceeEEE
Confidence            48999999999999999999987654  589999999999 5665 69999987765               34568888


Q ss_pred             eeccCCccc-----cCCCCCCCCCCCCCCCccc----cCCCCCcEEEEEeC-CCCcccccee
Q 013071          228 RVIMGNMEP-----LFPGTKQFHPSSEDFDSGV----DDLQNPRHYIVWNM-NMNTHIFPEF  279 (450)
Q Consensus       228 RVllGk~~~-----v~p~sk~~~ps~~~YDSvV----d~~~nP~~yVVy~~-~mNtqiyPeY  279 (450)
                      +|++|....     ..|+.....+..+.||+++    |+..+|.+||||+. +   |+||||
T Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~e~VV~~~~~---Qv~~~Y  137 (137)
T cd01341          79 LGVMSGATEESSRVLFPRNFRGATGAEVVDLLVAMCRDALLLPREYIIFEPYS---QVSIRY  137 (137)
T ss_pred             EEEeccccccccccccccccCCCCCCeEEEcccccccchhhCCCeEEEecchh---hceecC
Confidence            887777653     2344444445567899999    58889999999998 7   999998

Bacterial toxins are cytoplasmic and catalyze the transfer of a single ADP_ribose unit to eukaryotic elongation factor 2, halting protein synthesis and killing the cell. Poly(ADP-ribose) polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length in part through poy(ADP_ribosylation) of telomere repeat binding factor 1 (TRF1). Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region o

>KOG1037 consensus NAD+ ADP-ribosyltransferase Parp, required for poly-ADP ribosylation of nuclear proteins [Transcription; Replication, recombination and repair; Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=3.4e-09  Score=114.48  Aligned_cols=185  Identities=17%  Similarity=0.199  Sum_probs=114.2

Q ss_pred             ccchhhhccchhhhhcccccccCCCC-CccceeeecccccCCCCccccCCCCC-C-CCC---Cce-eEEEEcCCCChhHH
Q 013071           39 QSKLKECSGESNAFIKQIQIAPKPAS-NKYVVEVEDSCNRKPDAKLDETTGQN-Q-NTK---TSL-VNKSVVVDDKLDSD  111 (450)
Q Consensus        39 ~~kl~~~s~~s~~~~k~~~i~~~~~~-~~~~vev~~s~~~k~~~~~~e~i~~W-~-~~~---~~~-~~~i~L~~~s~EY~  111 (450)
                      .+.|.+-+.++..+++|..+-..|.+ .+--++.-..........-.+....| + +.+   .++ .....++.++.||.
T Consensus       243 ~~~l~~~~~~f~~~ip~~~~~~~~~~~~~~~le~~~~i~~a~~~~~~~~~~~~~~~Pl~~~y~~l~c~~~~~~~~~~e~k  322 (531)
T KOG1037|consen  243 GEQLAKASTEFYTLIPHDFGMRKPPNEKQEALEALLDIELAYGLRKGDDVDATCDDPLDKHYKDLKCKIEKLDKDSEEFK  322 (531)
T ss_pred             HHHHHHHhhhhhhhcCCCCCcCCCchhhHHHHHHhhhhhhhhhhhhccccccCCCChhhhHHHhhhhhhccccccchhHH
Confidence            44588999999999999975554322 00111111111110001112233445 3 222   122 23335666779999


Q ss_pred             HHHHHHHccCCCCCCCcEEEEEEecCH---hHHHHHHHHHHHHHHHhhcCCCCceEEEeecCChhhHHHHhhccCCCC--
Q 013071          112 SVRSMFLMGMSPSSGVDILDVQRCSSA---SLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHC--  186 (450)
Q Consensus       112 ~V~~~F~~g~~~~~~~~I~kIeRIqN~---~l~aryq~fKk~m~~~~k~~G~~Ner~LFHGTs~~~i~~I~~~GFd~~--  186 (450)
                      .+.+....+-........+.+..+.+.   ....++.          ......|.+.+|||+...++..|+..|+...  
T Consensus       323 mi~~~~~~~~~~~~~~~~~~~~~l~k~~~~~e~~~~~----------~~~~~~~r~llw~gs~~~n~a~~l~~g~~~~~~  392 (531)
T KOG1037|consen  323 MIAQYVEKTHAKTSTVKVVQIADLKKVNEKNEADRKV----------DISELINRQLLWHGSRFGNLAGILSPGLRLAPS  392 (531)
T ss_pred             HHHHHHHhhccccCccCceeehhHHHhhhcccccccc----------cCcccccccchhcccceeeeeccccCCceecCC
Confidence            999999886543222222223322221   1111110          1122468999999999999999999999763  


Q ss_pred             CCCCCCCcccceeEeccCCCCCccCCccccC-CCCcEEEEEEeeccCCcc
Q 013071          187 GASTTKSTYGIGVHLAAASCPDTSASYTDVD-ENGVRHMVLCRVIMGNME  235 (450)
Q Consensus       187 ~a~~~g~~yG~GIYFAp~n~s~kS~~Y~~~d-~~G~r~MfLcRVllGk~~  235 (450)
                      ..+..|+|||+|||||  +++.+|++||.+. ....++|++|.|++|+..
T Consensus       393 ~~~~~g~~~gkgiyfa--~~~sks~~y~~~~~~k~~~~ll~~~~alg~~~  440 (531)
T KOG1037|consen  393 EAPVTGYMFGKGIYFA--DAASKSANYCVTMKGKPTGHLLLCDVALGKEQ  440 (531)
T ss_pred             CCCceeeccccceEee--eecccccccccccccCchhhhhhhhhhccchh
Confidence            4456799999999999  5667899999866 567889999999999974

>PF12509 DUF3715: Protein of unknown function (DUF3715); InterPro: IPR022188 This domain family is found in eukaryotes, and is approximately 170 amino acids in length

Probab=89.03  E-value=1  Score=42.11  Aligned_cols=118  Identities=14%  Similarity=0.263  Sum_probs=73.8

Q ss_pred             ecCHhHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCh-hhHHHHhhccCCCCCCCCCCCcccc---eeEeccCCCCCcc
Q 013071          135 CSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSK-GALSTMIMYGLGHCGASTTKSTYGI---GVHLAAASCPDTS  210 (450)
Q Consensus       135 IqN~~l~aryq~fKk~m~~~~k~~G~~Ner~LFHGTs~-~~i~~I~~~GFd~~~a~~~g~~yG~---GIYFAp~n~s~kS  210 (450)
                      |.|..|...|..++..+.........--+.+.|.-... ..+..||..|+..+..  .....|+   |+|+. . .+...
T Consensus         1 i~n~~Ls~efse~~~~~~~~~~~~~eL~e~~~fl~~~~~~~~~~v~~~GL~v~~~--k~~~Lg~ps~gv~~~-~-~~D~~   76 (165)
T PF12509_consen    1 IHNEALSKEFSEKRSSMKREGRSSSELPENYCFLSKESRSQVTSVCQRGLKVGNQ--KGTILGKPSMGVYLS-R-HSDLL   76 (165)
T ss_pred             CCCHHHHHHHhhhhhhhhhcCCChhhhhhhheeeecccchhhHHHHhcccccccc--cccccCCCCCCcccc-c-CCchh
Confidence            56788899998888887642222222335556654544 6778889999987522  3556777   89998 2 22222


Q ss_pred             CCccccCCCCcEEEEEEeeccCCccccCCCC---CCCCCCCCCCCcccc
Q 013071          211 ASYTDVDENGVRHMVLCRVIMGNMEPLFPGT---KQFHPSSEDFDSGVD  256 (450)
Q Consensus       211 ~~Y~~~d~~G~r~MfLcRVllGk~~~v~p~s---k~~~ps~~~YDSvVd  256 (450)
                      ..+..........+++.+|+-|++..+.+..   +..-++...||+.+.
T Consensus        77 ~~~~~~~~~~~~~ii~~kv~~~k~k~i~~~~~~~~~~~~p~p~~d~h~~  125 (165)
T PF12509_consen   77 ESQPFICSSANGEIIIFKVLKGKVKKISDSNGSTQSFLDPTPSYDCHVS  125 (165)
T ss_pred             hcchhhhcCCCCceeEEeeccCcccccccccccccccCCCcccHHHHhh
Confidence            2222211223457889999999998776654   334455668998874

>PF12767 SAGA-Tad1: Transcriptional regulator of RNA polII, SAGA, subunit; InterPro: IPR024738 The yeast Spt-Ada-Gcn5-Acetyl (SAGA) transferase complex is a multifunctional coactivator involved in multiple cellular processes [], including regulation of transcription by RNA polymerase II [, ]

Probab=88.80  E-value=2  Score=42.60  Aligned_cols=66  Identities=20%  Similarity=0.384  Sum_probs=59.2

Q ss_pred             ccHHHHHHHHhccCChhHHHHHHHHHHHHHhcCCChHHHHHHHHHHhh-h------HHHHHHHHHhhccCCCc
Q 013071          357 MPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVG-D------DLLRSTITALQCKIPSK  422 (450)
Q Consensus       357 ~~F~~L~~~l~~~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~IvG-D------~lL~~~i~~~q~k~~~~  422 (450)
                      +-...|-..|.+.|++++...-..+...|=.+||||+||-+.++.+.| |      ++|++++.+.+.+.|+.
T Consensus         9 idl~~lk~~l~~~LG~~~~~~Y~~~l~~fl~~klsk~Efd~~~~~~L~~~~~~LHN~li~sIl~na~~~~p~~   81 (252)
T PF12767_consen    9 IDLEELKSQLQKRLGPDRWKKYFQSLKRFLSGKLSKEEFDKECRRILGRENVHLHNQLILSILKNALAKSPPP   81 (252)
T ss_pred             cCHHHHHHHHHHHHChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHhhcCCCc
Confidence            677789999999999999999999999999999999999999999999 5      47899999997776653

It is formed of five major modular subunits and shows a high degree of structural conservation to human TFTC and STAGA []. This entry represents Ada1 (known as Tada1 in higher eukaryotes), one of the subunits that constitute the SAGA core. It also functions as a component of the SALSA and SLIK complexes. ; GO: 0070461 SAGA-type complex

>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]

Probab=85.36  E-value=1.6  Score=41.76  Aligned_cols=60  Identities=23%  Similarity=0.371  Sum_probs=45.8

Q ss_pred             ccHHH---HHHHHhccCChh-HHHHHHHHHHHHHhcCCChHHHHHHHHHHhh------hHHHHHHHHHhh
Q 013071          357 MPFPM---LFASISNKVSPK-VMEQISNQYELFRAKKVNRDDFVKKLRLIVG------DDLLRSTITALQ  416 (450)
Q Consensus       357 ~~F~~---L~~~l~~~l~~~-~~~~i~~~y~~~k~~kI~r~~~v~~~R~IvG------D~lL~~~i~~~q  416 (450)
                      +.|..   ++++.++.-++. ++....+.|+.=+.|.|+|+||.+.|+..+|      |.++..++-..=
T Consensus        84 v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~  153 (187)
T KOG0034|consen   84 VDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTF  153 (187)
T ss_pred             cCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence            55554   555555555555 8999999999999999999999999999999      455555554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	450
4f0e_A	200	Human Adp-Ribosyltransferase 7 (Artd7PARP15), CATAL		2e-09
3blj_A	221	Crystal Structure Of Human Poly(adp-ribose) Polymer		2e-09
3goy_A	193	Crystal Structure Of Human Poly(Adp-Ribose) Polymer		3e-05

>pdb|4F0E|A Chain A, Human Adp-Ribosyltransferase 7 (Artd7PARP15), CATALYTIC DOMAIN IN Complex With Sto1102 Length = 200

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 78/164 (47%), Gaps = 10/164 (6%)
Query: 125 SGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLG 184
           S   I  ++R  +A L   +++ ++Q++I N  +   N R  +  T   ++  +  +G  
Sbjct: 40  SSYAIEKIERIQNAFLWQSYQVKKRQMDIKNDHKN--NERLLFHGTDADSVPYVNQHGFN 97
Query: 185 HCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEP-----LFP 239
              A     +YG G + A  +      +Y+  D NG +HM + RV+ G         + P
Sbjct: 98  RSCAGKNAVSYGKGTYFAVDASYSAKDTYSKPDSNGRKHMYVVRVLTGVFTKGRAGLVTP 157
Query: 240 GTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSF 283
             K  H  ++ FDS  ++ ++P+ ++V+    +   +PE++++F
Sbjct: 158 PPKNPHNPTDLFDSVTNNTRSPKLFVVF---FDNQAYPEYLITF 198

>pdb|3BLJ|A Chain A, Crystal Structure Of Human Poly(adp-ribose) Polymerase 15, Catalytic Fragment Length = 221

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 78/164 (47%), Gaps = 10/164 (6%)
Query: 125 SGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLG 184
           S   I  ++R  +A L   +++ ++Q++I N  +   N R  +  T   ++  +  +G  
Sbjct: 61  SSYAIEKIERIQNAFLWQSYQVKKRQMDIKNDHKN--NERLLFHGTDADSVPYVNQHGFN 118
Query: 185 HCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEP-----LFP 239
              A     +YG G + A  +      +Y+  D NG +HM + RV+ G         + P
Sbjct: 119 RSCAGKNAVSYGKGTYFAVDASYSAKDTYSKPDSNGRKHMYVVRVLTGVFTKGRAGLVTP 178
Query: 240 GTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSF 283
             K  H  ++ FDS  ++ ++P+ ++V+    +   +PE++++F
Sbjct: 179 PPKNPHNPTDLFDSVTNNTRSPKLFVVF---FDNQAYPEYLITF 219

>pdb|3GOY|A Chain A, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase 14, Catalytic Fragment In Complex With An Inhibitor 3-Aminobenzamide Length = 193

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/165 (19%), Positives = 72/165 (43%), Gaps = 10/165 (6%)
Query: 125 SGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLG 184
           S   I  ++R  +  L   ++  +K ++  N      N +  +  T  G++  +   G  
Sbjct: 33  SHFRIEKIERIQNPDLWNSYQAKKKTMDAKNG--QTMNEKQLFHGTDAGSVPHVNRNGFN 90
Query: 185 HCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIM-----GNMEPLFP 239
              A      YG G + A  +    + +Y+  D NG +H+   RV+      GN   + P
Sbjct: 91  RSYAGKNAVAYGKGTYFAVNANYSANDTYSRPDANGRKHVYYVRVLTGIYTHGNHSLIVP 150
Query: 240 GTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFK 284
            +K     ++ +D+  D++ +P  ++ +    +   +PE++++F+
Sbjct: 151 PSKNPQNPTDLYDTVTDNVHHPSLFVAF---YDYQAYPEYLITFR 192

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	450
3blj_A	221	Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC,	1e-33
3hkv_A	217	PARP-10, poly [ADP-ribose] polymerase 10; NAD, tra	1e-33
3smj_A	193	Poly [ADP-ribose] polymerase 14; diphtheria toxin	5e-33
2pqf_A	198	Poly [ADP-ribose] polymerase 12; enzyme-inhibitor	4e-26
2x5y_A	173	Zinc finger CCCH-type antiviral protein 1; antivir	8e-19
3u9h_A	240	Tankyrase-2; protein-ligand complex, diphtheria to	8e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3c4h_A	357	Poly(ADP-ribose) polymerase 3; enzyme-inhibitor co	7e-06
1efy_A	350	Poly (ADP-ribose) polymerase; benzimidazole, inhib	3e-05
4dqy_C	506	Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-rib	3e-05
3kjd_A	368	Poly [ADP-ribose] polymerase 2; transferase, enzym	7e-04

>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A* Length = 221

 Score =  125 bits (314), Expect = 1e-33
 Identities = 38/187 (20%), Positives = 81/187 (43%), Gaps = 18/187 (9%)

Query: 108 LDSDS-----VRSMFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDAN 162
           L+        ++  F    S      I  ++R  +A L   +++ ++Q++   K     N
Sbjct: 42  LEPGQSEYNTIKDKFTRTCS---SYAIEKIERIQNAFLWQSYQVKKRQMD--IKNDHKNN 96

Query: 163 VRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVR 222
            R  +  T   ++  +  +G     A     +YG G + A  +      +Y+  D NG +
Sbjct: 97  ERLLFHGTDADSVPYVNQHGFNRSCAGKNAVSYGKGTYFAVDASYSAKDTYSKPDSNGRK 156

Query: 223 HMVLCRVIMG-----NMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFP 277
           HM + RV+ G         + P  K  H  ++ FDS  ++ ++P+ ++V+    +   +P
Sbjct: 157 HMYVVRVLTGVFTKGRAGLVTPPPKNPHNPTDLFDSVTNNTRSPKLFVVFF---DNQAYP 213

Query: 278 EFVVSFK 284
           E++++F 
Sbjct: 214 EYLITFT 220

>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase, structural genomics, structural genomics consortium, SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A {Homo sapiens} Length = 217

 Score =  125 bits (314), Expect = 1e-33
 Identities = 32/190 (16%), Positives = 79/190 (41%), Gaps = 16/190 (8%)

Query: 107 KLDSDS-----VRSMFLMGMSPS-SGVDILDVQRCSSASLLARFELFQKQLEITNKCRGD 160
           +L  ++     V   F   +  + S + ++ V+R S   L  ++EL++++L    +C   
Sbjct: 15  RLAENTGEFQEVVRAFYDTLDAARSSIRVVRVERVSHPLLQQQYELYRERLL--QRCERR 72

Query: 161 ANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENG 220
              +  +  T+  A+  +  +G          + YG GV+ A  +       Y+  + +G
Sbjct: 73  PVEQVLYHGTTAPAVPDICAHGFNRSFCGRNATVYGKGVYFAKRASLSVQDRYSPPNADG 132

Query: 221 VRHMVLCRVIMGNMEPLF-----PGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHI 275
            + + + RV+ G+          P  +        +DS +D +  P  +++++   +T  
Sbjct: 133 HKAVFVARVLTGDYGQGRRGLRAPPLRGPGHVLLRYDSAMDCICQPSIFVIFH---DTQA 189

Query: 276 FPEFVVSFKF 285
            P  +++ + 
Sbjct: 190 LPTHLITCEH 199

>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* Length = 193

 Score =  122 bits (308), Expect = 5e-33
 Identities = 36/187 (19%), Positives = 76/187 (40%), Gaps = 18/187 (9%)

Query: 108 LDSDS-----VRSMFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDAN 162
           L         V S F    S      I  ++R  +  L   ++  +K ++   K     N
Sbjct: 14  LLPSDPEYNTVASKFNQTCS---HFRIEKIERIQNPDLWNSYQAKKKTMD--AKNGQTMN 68

Query: 163 VRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVR 222
            +  +  T  G++  +   G     A      YG G + A  +    + +Y+  D NG +
Sbjct: 69  EKQLFHGTDAGSVPHVNRNGFNRSYAGKNAVAYGKGTYFAVNANYSANDTYSRPDANGRK 128

Query: 223 HMVLCRVIMG-----NMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFP 277
           H+   RV+ G     N   + P +K     ++ +D+  D++ +P  ++ +    +   +P
Sbjct: 129 HVYYVRVLTGIYTHGNHSLIVPPSKNPQNPTDLYDTVTDNVHHPSLFVAFY---DYQAYP 185

Query: 278 EFVVSFK 284
           E++++F+
Sbjct: 186 EYLITFR 192

>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens} Length = 198

 Score =  103 bits (259), Expect = 4e-26
 Identities = 34/190 (17%), Positives = 72/190 (37%), Gaps = 19/190 (10%)

Query: 107 KLDSDS-----VRSMFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDA 161
            L S S     V ++F   +       +  ++R  + +L   ++  + Q++  N      
Sbjct: 16  TLSSSSEEYQKVWNLFNRTLPF---YFVQKIERVQNLALWEVYQWQKGQMQKQNG-GKAV 71

Query: 162 NVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGV 221
           + R  +  TS   +  +              ++YG G +   A     S  Y+  D    
Sbjct: 72  DERQLFHGTSAIFVDAICQQNFDWRVCGVHGTSYGKGSYF--ARDAAYSHHYSKSDTQT- 128

Query: 222 RHMVLCRVIMGNMEPLFPGTK----QFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFP 277
             M L RV++G              +   S+  +DS V+ + +P  ++++       ++P
Sbjct: 129 HTMFLARVLVGEFVRGNASFVRPPAKEGWSNAFYDSCVNSVSDPSIFVIFE---KHQVYP 185

Query: 278 EFVVSFKFSS 287
           E+V+ +  SS
Sbjct: 186 EYVIQYTTSS 195

>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense, immune system, transferase; 1.05A {Homo sapiens} Length = 173

 Score = 82.8 bits (204), Expect = 8e-19
 Identities = 31/182 (17%), Positives = 64/182 (35%), Gaps = 25/182 (13%)

Query: 108 LDSDS-----VRSMFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDAN 162
           +         V   F   M       I  +++  ++ LL +F           K +    
Sbjct: 10  IHHLHPEYVRVSEHFKASMK---NFKIEKIKKIENSELLDKFTWK--------KSQMKEE 58

Query: 163 VRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVR 222
            +  + ATS+  + ++           T ++ YG G++ A       S      D     
Sbjct: 59  GKLLFYATSRAYVESICSNNFDSFLHETHENKYGKGIYFA--KDAIYSHKNCPYD-AKNV 115

Query: 223 HMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVS 282
            M + +V++G       G   +      FDS VD   NP  ++++       ++P++V+ 
Sbjct: 116 VMFVAQVLVGKFIE---GNITYTSPPPQFDSCVDTRSNPSVFVIFQ---KDQVYPQYVIE 169

Query: 283 FK 284
           + 
Sbjct: 170 YT 171

>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* Length = 240

 Score = 67.1 bits (163), Expect = 8e-13
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 29/176 (16%)

Query: 127 VDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHC 186
            +IL +Q+  +  L  R+   +K++    +    AN R  +  +    ++ +I  G    
Sbjct: 70  YNILKIQKVCNKKLWERYTHRRKEVS--EENHNHANERMLFHGSP--FVNAIIHKGFDE- 124

Query: 187 GASTTKSTYGIGVHLAAASCPDTSASYTDVDENG--------------VRHMVLCRVIMG 232
             +     +G G++ A       S  Y      G               R ++ CRV +G
Sbjct: 125 RHAYIGGMFGAGIYFA--ENSSKSNQYVYGIGGGTGCPVHKDRSCYICHRQLLFCRVTLG 182

Query: 233 NMEPLFPGTKQFHP----SSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFK 284
                F   K  H      S      V+ L     Y+++        +PE++++++
Sbjct: 183 KSFLQFSAMKMAHSPPGHHSVTGRPSVNGL-ALAEYVIYR---GEQAYPEYLITYQ 234

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.5 bits (156), Expect = 3e-11
 Identities = 58/445 (13%), Positives = 113/445 (25%), Gaps = 137/445 (30%)

Query: 83  LDETTGQNQ--NTKTSLVNKSVVVDDKLD----SDSVRSMFLMGMSPSSGVD-ILDVQRC 135
           +D  TG++Q        V +   VD+  D     D  +S+          +D I+  +  
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDN-FDCKDVQDMPKSIL-----SKEEIDHIIMSKDA 60

Query: 136 SSASLLARFELFQKQLEITNKCRGDA-NVRYAWLATS----------------------- 171
            S +L   + L  KQ E+  K   +   + Y +L +                        
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 172 --------------------KGALSTM------IMYGLGHCGASTTKSTYGIGVHLAAAS 205
                               + AL  +      ++ G+   G    K+       +A   
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG----KTW------VALDV 170

Query: 206 CPDT-------------SASYTDVDENGVRHMV-LCRVIMGNMEPLFPGTKQFHPSSEDF 251
           C                +    +  E  +  +  L   I  N       +          
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 252 DSGVDDLQNPRHY-----I---VWNMNMNTHIFPEFVVSFKFSSNVEGHLIRSESQRAIS 303
            + +  L   + Y     +   V N         +   +F  S  +   L+ +   R   
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQN--------AKAWNAFNLSCKI---LLTT---RFKQ 276

Query: 304 VLTTSSQGLQGHLRLDSSAD-FGDVSHPVSDSGGSQGKAPSTSSST-PR-APKSPWMPFP 360
           V    S     H+ LD  +           +      K         PR    +     P
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTP-----DEVKSLLLKYLDCRPQDLPREVLTT----NP 327

Query: 361 MLFASISNKVSPKVMEQISNQYELFRAKKVNR--DDFVKKLRLIVGDDLLRSTITAL--- 415
              + I+  +  +      + ++     K+    +  +  L         R     L   
Sbjct: 328 RRLSIIAESI--RDGLATWDNWKHVNCDKLTTIIESSLNVLE----PAEYRKMFDRLSVF 381

Query: 416 --QCKIPSKR-EV--GEVKPDVDME 435
                IP+    +   +V     M 
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMV 406

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.1 bits (155), Expect = 5e-11
 Identities = 52/357 (14%), Positives = 98/357 (27%), Gaps = 108/357 (30%)

Query: 3   LVLASFLKFTLMVMNHTSVHKLNIKLQLEIDIAGLDQSKLKECSGESNAFIKQIQIAPK- 61
           L+   F + T  +   T+ H     + L+     L   ++K         +K +   P+ 
Sbjct: 269 LLTTRFKQVTDFLSAATTTH-----ISLDHHSMTLTPDEVKS------LLLKYLDCRPQD 317

Query: 62  -PASNKYVVEVEDSCNRKP------DAKLDETTGQNQNTKTSLVNK-SVVVD---DKLDS 110
            P          +     P         + +      N K    +K + +++   + L+ 
Sbjct: 318 LP---------REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

Query: 111 DSVRSMFL-MGMSPSSGVDI------------------LDVQRCSSASLLAR------FE 145
              R MF  + + P S   I                  + V +    SL+ +        
Sbjct: 369 AEYRKMFDRLSVFPPS-AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427

Query: 146 LFQKQLEITNKCRGDANV------RYAWLATSKG---ALSTMIMYGLGHCGASTTKSTYG 196
           +    LE+  K   +  +       Y    T          +  Y   H           
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH----------- 476

Query: 197 IGVHLAAASCPDTSAS----YTDVD--ENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSED 250
           IG HL     P+        + D    E  +RH        G++                
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL------------ 524

Query: 251 FDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNVEGHLIRSES----QRAIS 303
                  L+  + YI  N      +    +    F   +E +LI S+     + A+ 
Sbjct: 525 -----QQLKFYKPYICDNDPKYERLVNAIL---DFLPKIEENLICSKYTDLLRIALM 573

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 58/459 (12%), Positives = 140/459 (30%), Gaps = 111/459 (24%)

Query: 4   VLASFLKFTLMVMNHTSVHKLNIKLQLEIDIAGLDQSKLKEC---SGESNAFIKQIQIAP 60
           V  +   F  ++     + +  ++  L I+   L      E    S  +  +I+Q     
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD--- 117

Query: 61  KPASNKYVVEVEDSCNR-KPDAKLDETTGQNQNTKTSLVN------KSVVVDDKLDSDSV 113
               N   V  + + +R +P  KL +   + +  K  L++      K+ V  D   S  V
Sbjct: 118 -RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 114 RSMFLMGMSPSSGVDILDVQRCSSA-SLLARFELFQKQLE--ITNKCRGDANVRYAWLAT 170
           +            +  L+++ C+S  ++L   +    Q++   T++    +N++   + +
Sbjct: 177 QCKM------DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR-IHS 229

Query: 171 SKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYT-------DV-DENGVR 222
            +  L  ++                              S  Y        +V +     
Sbjct: 230 IQAELRRLLK-----------------------------SKPYENCLLVLLNVQNAKAWN 260

Query: 223 HMVL-CRVIM-----GNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIF 276
              L C++++        + L       H S +     +   +     + + ++      
Sbjct: 261 AFNLSCKILLTTRFKQVTDFL-SAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCRPQDL 318

Query: 277 PEFVVSFKFSSNVEGHLIRSESQRAISVLTTSSQGLQGHLRLD--SSADFGDVSHPVSDS 334
           P            E       + R +S++  S +   G    D     +   ++  +  S
Sbjct: 319 PR-----------EVLTT---NPRRLSIIAESIR--DGLATWDNWKHVNCDKLTTIIESS 362

Query: 335 GGSQGKAPSTSSSTPRA--------PKSPWMPFPMLFASISNKVSPKVMEQISNQYELFR 386
                       +  R         P S  +P  +L + I   V    +  + N  +L +
Sbjct: 363 LNVL------EPAEYRKMFDRLSVFPPSAHIP-TILLSLIWFDVIKSDVMVVVN--KLHK 413

Query: 387 AKKVNRDDFVKKLRLIVGDDLLRSTITALQCKIPSKREV 425
              V +      + +     +       L+ K+ ++  +
Sbjct: 414 YSLVEKQPKESTISI---PSIYLE----LKVKLENEYAL 445

>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A* Length = 357

 Score = 47.1 bits (111), Expect = 7e-06
 Identities = 35/254 (13%), Positives = 73/254 (28%), Gaps = 47/254 (18%)

Query: 27  KLQLEIDIAGLDQSKLKECSGESNAFIKQI----------------QIAPKPASNKYVVE 70
            L+  +         L+E S   + F   I                 +  K      + +
Sbjct: 60  ALEEALKGPTDGGQSLEELS---SHFYTVIPHNFGHSQPPPINSPELLQAKKDMLLVLAD 116

Query: 71  VEDSCNRKPDAKLDETTGQNQN-----TKTSLVNKSVVVDDKLDSDSVRSMFLMGMSPSS 125
           +E +   +  ++ ++T  +  +      +       ++     +   +++      S   
Sbjct: 117 IELAQALQAVSEQEKTVEEVPHPLDRDYQLLKCQLQLLDSGAPEYKVIQTYLEQTGSNHR 176

Query: 126 GVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGL-- 183
              +  + + +      RF+   K            N +  W  T+   ++ ++  GL  
Sbjct: 177 CPTLQHIWKVNQEGEEDRFQAHSKL----------GNRKLLWHGTNMAVVAAILTSGLRI 226

Query: 184 -GHCGASTTKSTYGIGVHLAAASCPDTSASY---TDVDENGVRHMVLCRVIMGNMEPLFP 239
             H G    K  Y        AS    SA Y        + V +M L  V +G    +  
Sbjct: 227 MPHSGGRVGKGIY-------FASENSKSAGYVIGMKCGAHHVGYMFLGEVALGREHHINT 279

Query: 240 GTKQFHPSSEDFDS 253
                      FDS
Sbjct: 280 DNPSLKSPPPGFDS 293

>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A* Length = 350

 Score = 45.1 bits (106), Expect = 3e-05
 Identities = 26/173 (15%), Positives = 60/173 (34%), Gaps = 30/173 (17%)

Query: 127 VDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGL--G 184
           + ++++ R        R++ F++            N +  W  +     + ++  GL   
Sbjct: 170 LKVVEIFRIEREGESQRYKPFKQL----------HNRQLLWHGSRTTNFAGILSQGLRIA 219

Query: 185 HCGASTTKSTYGIGVHLAAASCPDTSASYTDV-DENGVRHMVLCRVIMGNMEPLFPGTKQ 243
              A  T   +G G++ A       SA+Y      + +  ++L  V +GNM  L   +  
Sbjct: 220 PPEAPVTGYMFGKGIYFA--DMVSKSANYCHTSQADPIGLILLGEVALGNMYELKNASHI 277

Query: 244 FHPSS--------------EDFDSGVDDLQNPRHYIVWNMNMNTH-IFPEFVV 281
                                  + +D ++ P    +     +T  ++ E++V
Sbjct: 278 TKLPKGKHSVKGLGKTAPDPTATTTLDGVEVPLGNGISTGINDTCLLYNEYIV 330

>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A Length = 506

 Score = 45.3 bits (106), Expect = 3e-05
 Identities = 25/171 (14%), Positives = 58/171 (33%), Gaps = 26/171 (15%)

Query: 127 VDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHC 186
           ++++D+ +        R++ F++            N R  W  +     + ++  GL   
Sbjct: 315 LEVIDIFKIEREGECQRYKPFKQL----------HNRRLLWHGSRTTNFAGILSQGLRIA 364

Query: 187 GASTTKSTYGIGVHLAAASCPDTSASYTD-VDENGVRHMVLCRVIMGNMEPLFPGTKQFH 245
                 + Y  G  +  A     SA+Y      + +  ++L  V +GNM  L   +    
Sbjct: 365 PPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLILLGEVALGNMYELKHASHISK 424

Query: 246 P--------------SSEDFDSGVDDLQNPRHYIVWNMNMNTHI-FPEFVV 281
                               +  +D +  P    + +   +T + + E++V
Sbjct: 425 LPKGKHSVKGLGKTTPDPSANISLDGVDVPLGTGISSGVNDTSLLYNEYIV 475

>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, S genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A Length = 368

 Score = 40.5 bits (94), Expect = 7e-04
 Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 6/125 (4%)

Query: 132 VQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGL--GHCGAS 189
                + +LL  FE+ +K  E         N    W  +       ++ +GL   H  A 
Sbjct: 182 THSDYTMTLLDLFEV-EKDGEKEAFREDLHNRMLLWHGSRMSNWVGILSHGLRIAHPEAP 240

Query: 190 TTKSTYGIGVHLAAASCPDTSASYTDVDEN-GVRHMVLCRVIMGNMEPLFPGTKQFHPSS 248
            T   +G G++ A       SA+Y           ++L  V +G    L     +     
Sbjct: 241 ITGYMFGKGIYFA--DMSSKSANYCFASRLKNTGLLLLSEVALGQCNELLEANPKAEGLL 298

Query: 249 EDFDS 253
           +   S
Sbjct: 299 QGKHS 303

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	450
3smj_A	193	Poly [ADP-ribose] polymerase 14; diphtheria toxin	100.0
3hkv_A	217	PARP-10, poly [ADP-ribose] polymerase 10; NAD, tra	100.0
3blj_A	221	Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC,	100.0
2pqf_A	198	Poly [ADP-ribose] polymerase 12; enzyme-inhibitor	100.0
2x5y_A	173	Zinc finger CCCH-type antiviral protein 1; antivir	100.0
3u9h_A	240	Tankyrase-2; protein-ligand complex, diphtheria to	100.0
1efy_A	350	Poly (ADP-ribose) polymerase; benzimidazole, inhib	100.0
3c4h_A	357	Poly(ADP-ribose) polymerase 3; enzyme-inhibitor co	99.97
3kjd_A	368	Poly [ADP-ribose] polymerase 2; transferase, enzym	99.97
4dqy_C	506	Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-rib	99.97
4f0d_A	277	PARP-16, poly [ADP-ribose] polymerase 16; transfer	99.25

>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* 4f1l_A* 4f1q_A*

Probab=100.00  E-value=4.3e-48  Score=364.10  Aligned_cols=184  Identities=20%  Similarity=0.355  Sum_probs=164.1

Q ss_pred             CCCCceeEEEEcCCCChhHHHHHHHHHccCCCCCCCcEEEEEEecCHhHHHHHHHHHHHHHHHhhcCCCCceEEEeecCC
Q 013071           92 NTKTSLVNKSVVVDDKLDSDSVRSMFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATS  171 (450)
Q Consensus        92 ~~~~~~~~~i~L~~~s~EY~~V~~~F~~g~~~~~~~~I~kIeRIqN~~l~aryq~fKk~m~~~~k~~G~~Ner~LFHGTs  171 (450)
                      +|+++.+++++|.++++||+.|+++|.+||+   +++|++|+||+|+.+|++|+++|++|+.  ++++.+||++|||||+
T Consensus         3 ~m~~~~~~l~~L~~~s~Ey~~V~~~f~~t~~---~~~I~~I~rI~n~~l~~~f~~~k~~~~~--k~~~~~ne~~L~HGt~   77 (193)
T 3smj_A            3 DMKQQNFCVVELLPSDPEYNTVASKFNQTCS---HFRIEKIERIQNPDLWNSYQAKKKTMDA--KNGQTMNEKQLFHGTD   77 (193)
T ss_dssp             ---CCCEEEEECCTTSTTHHHHHHHHHHHHT---TSEEEEEEEEECHHHHHHHHHHHHHHHH--HSTTCCCEEEEEEEEC
T ss_pred             CCCCCCEEEEECCCCChHHHHHHHHHHhhCC---CCeEEEEEEECCHHHHHHHHHHHHHHHH--hcCCCCCeEEEEeCCC
Confidence            4666778999999999999999999999986   5899999999999999999999999874  4566789999999999


Q ss_pred             hhhHHHHhhccCCCCCCCCCCCcccceeEeccCCCCCccCC--ccccCCCCcEEEEEEeeccCCcc-----ccCCCCCCC
Q 013071          172 KGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSAS--YTDVDENGVRHMVLCRVIMGNME-----PLFPGTKQF  244 (450)
Q Consensus       172 ~~~i~~I~~~GFd~~~a~~~g~~yG~GIYFAp~n~s~kS~~--Y~~~d~~G~r~MfLcRVllGk~~-----~v~p~sk~~  244 (450)
                      .++++.||++||++++++.++++||+||||| .+++ +|++  ||.++++|.++||||||++|++.     .+.||+++.
T Consensus        78 ~~~~~~I~~~Gf~~~~~~~~~~~~G~GiYfa-~~~s-~S~~~~y~~~~~~g~~~mllcrV~~G~~~~g~~~~~~pP~~~~  155 (193)
T 3smj_A           78 AGSVPHVNRNGFNRSYAGKNAVAYGKGTYFA-VNAN-YSANDTYSRPDANGRKHVYYVRVLTGIYTHGNHSLIVPPSKNP  155 (193)
T ss_dssp             GGGHHHHHHHTTCCCCTTGGGSSSCCCEEEE-SSHH-HHTSTTTSCCCTTSCEEEEEEEEECCSEEECCSSCCSCCBSCT
T ss_pred             HHHHHHHHHcCCCCccCCCCccccCCeEEec-CCcc-hhcCccccCCCCCCcEEEEEEEEEecccccCCCccCCCCCccC
Confidence            9999999999999999988899999999999 4554 6888  88888999999999999999964     567777766


Q ss_pred             CCCCCCCCccccCCCCCcEEEEEeCCCCccccceeEEEEEe
Q 013071          245 HPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKF  285 (450)
Q Consensus       245 ~ps~~~YDSvVd~~~nP~~yVVy~~~mNtqiyPeYLItyk~  285 (450)
                      .|+.++||||||++.+|++||||+++   ||||+|||+|+.
T Consensus       156 ~~~~~~yDSvv~~~~~p~~~VVf~~~---qiyP~YlI~y~~  193 (193)
T 3smj_A          156 QNPTDLYDTVTDNVHHPSLFVAFYDY---QAYPEYLITFRK  193 (193)
T ss_dssp             TSTTCBCSEEESCSSSCSEEEECSTT---CEEEEEEEEEEC
T ss_pred             CCCCCCccceeCCCCCCCEEEEEeCC---ceeeEEEEEEeC
Confidence            67788999999999999999999966   999999999973

>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase, structural genomics, structural genomics consortium, SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.1e-47  Score=367.51  Aligned_cols=184  Identities=17%  Similarity=0.328  Sum_probs=163.2

Q ss_pred             eEEEEcCCCChhHHHHHHHHHccCCC-CCCCcEEEEEEecCHhHHHHHHHHHHHHHHHhhcCCCCceEEEeecCChhhHH
Q 013071           98 VNKSVVVDDKLDSDSVRSMFLMGMSP-SSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALS  176 (450)
Q Consensus        98 ~~~i~L~~~s~EY~~V~~~F~~g~~~-~~~~~I~kIeRIqN~~l~aryq~fKk~m~~~~k~~G~~Ner~LFHGTs~~~i~  176 (450)
                      ..+++|.++++||+.|+++|.+||++ +.+++|++|+||+|+.||++|+++|++|+.  +..+..||++|||||+.++++
T Consensus        11 ~~L~~L~~~s~Ey~~V~~~F~~t~~~~~~~~~I~~I~RIqn~~l~~~f~~~k~~m~~--k~~~~~ne~~LfHGt~~~~~~   88 (217)
T 3hkv_A           11 NNLERLAENTGEFQEVVRAFYDTLDAARSSIRVVRVERVSHPLLQQQYELYRERLLQ--RCERRPVEQVLYHGTTAPAVP   88 (217)
T ss_dssp             CCEEECCSSSHHHHHHHHHHHHTTGGGGGTEEEEEEEEECCHHHHHHHHHHHHHHHH--HCCSSCSEEEEEEEECGGGHH
T ss_pred             ccceECCCCChHHHHHHHHHHhhcCCcCCCceEEEEEEECChhHHHHHHHHHHHHHH--hcCCCCceEEEEeCCCHHHHH
Confidence            34689999999999999999999974 335899999999999999999999999884  455678999999999999999


Q ss_pred             HHhhccCCCCCCCCCCCcccceeEeccCCCCCccC--CccccCCCCcEEEEEEeeccCCcc-----ccCCCCCCCCCCCC
Q 013071          177 TMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSA--SYTDVDENGVRHMVLCRVIMGNME-----PLFPGTKQFHPSSE  249 (450)
Q Consensus       177 ~I~~~GFd~~~a~~~g~~yG~GIYFAp~n~s~kS~--~Y~~~d~~G~r~MfLcRVllGk~~-----~v~p~sk~~~ps~~  249 (450)
                      .||++||++++++.+|++||+||||| .+++ +|+  .||.++++|.++||||||++|+++     .+.||+++..+..+
T Consensus        89 ~I~~~GF~~~~~g~~g~~~G~GiYFA-~~~s-~S~~~~Y~~~~~~g~~~m~lcrVl~G~~~~g~~~~~~PP~~~~~~~~~  166 (217)
T 3hkv_A           89 DICAHGFNRSFCGRNATVYGKGVYFA-KRAS-LSVQDRYSPPNADGHKAVFVARVLTGDYGQGRRGLRAPPLRGPGHVLL  166 (217)
T ss_dssp             HHHHHCSCTTTSCCCCCTTCSSEEEE-SSHH-HHTSTTTSCCCTTSEEEEEEEEEECCSEEECCTTCSSSCBCCTTCSSS
T ss_pred             HHHhcCCcccccCcchhccccceecc-CCcc-cccccccccccCCCceEEEEEEEEccccccCCCccCCCCCCccCCCCC
Confidence            99999999999998999999999999 5655 464  799999999999999999999986     45667666556678


Q ss_pred             CCCccccCCCCCcEEEEEeCCCCccccceeEEEEEecCC
Q 013071          250 DFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSN  288 (450)
Q Consensus       250 ~YDSvVd~~~nP~~yVVy~~~mNtqiyPeYLItyk~~~~  288 (450)
                      +||||||++.+|++||||+++   ||||||||+|+.++.
T Consensus       167 ~yDSvvd~~~np~~~VVf~~~---qiyPeYLI~y~~~~~  202 (217)
T 3hkv_A          167 RYDSAMDCICQPSIFVIFHDT---QALPTHLITCEHVPR  202 (217)
T ss_dssp             BCSEEESCSSSCCEEEECCTT---SEEEEEEEEEEECC-
T ss_pred             ceeEEECCCCCCCEEEEEcCC---cCceeEEEEEecCCC
Confidence            999999999999999999965   999999999999865

>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A*

Probab=100.00  E-value=3.4e-46  Score=357.84  Aligned_cols=190  Identities=22%  Similarity=0.383  Sum_probs=166.9

Q ss_pred             CCCCCCCCCCceeEEEEcCCCChhHHHHHHHHHccCCCCCCCcEEEEEEecCHhHHHHHHHHHHHHHHHhhcCCCCceEE
Q 013071           86 TTGQNQNTKTSLVNKSVVVDDKLDSDSVRSMFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRY  165 (450)
Q Consensus        86 ~i~~W~~~~~~~~~~i~L~~~s~EY~~V~~~F~~g~~~~~~~~I~kIeRIqN~~l~aryq~fKk~m~~~~k~~G~~Ner~  165 (450)
                      ...+|+.++...+.+++|.++++||+.|+++|.+||+   .++|.+|+||+|+.+|+||+.+|++|+.  ++++..||++
T Consensus        25 ~P~~W~~~~~~~~~l~~L~~~s~ey~~V~~~f~~t~~---~~~I~~I~rV~n~~l~~~f~~~k~~~~~--k~~~~~ne~l   99 (221)
T 3blj_A           25 LPEHWTDMNHQLFCMVQLEPGQSEYNTIKDKFTRTCS---SYAIEKIERIQNAFLWQSYQVKKRQMDI--KNDHKNNERL   99 (221)
T ss_dssp             CCTTSCCCTTCSEEEEECCTTSHHHHHHHHHHHHHHT---TSEEEEEEEEEEHHHHHHHHHHHHHHHH--HSSSCCCEEE
T ss_pred             CCCCccccCCCCEEEEECCCCCHHHHHHHHHHHhhCC---CCEEEEEEEEcChhHHHHHHHHHHHHHH--hcCCCCceEE
Confidence            3589999987778999999999999999999999987   5899999999999999999999998874  4566789999


Q ss_pred             EeecCChhhHHHHhhccCCCCCCCCCCCcccceeEeccCCCCCccCC--ccccCCCCcEEEEEEeeccCCcc-----ccC
Q 013071          166 AWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSAS--YTDVDENGVRHMVLCRVIMGNME-----PLF  238 (450)
Q Consensus       166 LFHGTs~~~i~~I~~~GFd~~~a~~~g~~yG~GIYFAp~n~s~kS~~--Y~~~d~~G~r~MfLcRVllGk~~-----~v~  238 (450)
                      |||||+.++++.||++||++++++.++++||+||||| ++++ +|++  ||.++++|.++||||||++|++.     .+.
T Consensus       100 LfHGt~~~~~~~I~~~Gf~~~~a~~~g~~~G~GiYfa-~~~s-~S~~~~Y~~~~~~g~~~mllcrV~~G~~~~g~~~~~~  177 (221)
T 3blj_A          100 LFHGTDADSVPYVNQHGFNRSCAGKNAVSYGKGTYFA-VDAS-YSAKDTYSKPDSNGRKHMYVVRVLTGVFTKGRAGLVT  177 (221)
T ss_dssp             EEEEECGGGHHHHHHHCCCTTTC-----CCCSSEEEE-SSHH-HHHSTTTSCCCTTSCEEEEEEEEECCSEEECCTTCSS
T ss_pred             EeccCChHHHHHHHHhCCCCcccCCCCCccCCeEECC-cchh-hhcCcccccCCCCCcEEEEEEEEEeCCccCCChhccC
Confidence            9999999999999999999999988899999999999 4554 5776  99999999999999999999863     556


Q ss_pred             CCCCCCCCCCCCCCccccCCCCCcEEEEEeCCCCccccceeEEEEEe
Q 013071          239 PGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKF  285 (450)
Q Consensus       239 p~sk~~~ps~~~YDSvVd~~~nP~~yVVy~~~mNtqiyPeYLItyk~  285 (450)
                      ||+++..|+.++||||||++.+|++||||+.+   ||||+|||+|+.
T Consensus       178 pp~~~~~~~~~~yDSvv~~~~~~~e~VVy~~~---qiyP~YlI~y~~  221 (221)
T 3blj_A          178 PPPKNPHNPTDLFDSVTNNTRSPKLFVVFFDN---QAYPEYLITFTA  221 (221)
T ss_dssp             CCBSSTTSTTSBCSEEESCSSSCSEEEECSTT---SEEEEEEEEEEC
T ss_pred             CCcccCCCCCCCCCccccCCCCCCEEEEEcCC---eEeeeEEEEEEC
Confidence            77776667788999999999999999999987   999999999973

>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens}

Probab=100.00  E-value=7.2e-45  Score=342.88  Aligned_cols=187  Identities=18%  Similarity=0.304  Sum_probs=157.2

Q ss_pred             CCCCCC--CceeEEEEcCCCChhHHHHHHHHHccCCCCCCCcEEEEEEecCHhHHHHHHHHHHHHHHHhhcCCC-CceEE
Q 013071           89 QNQNTK--TSLVNKSVVVDDKLDSDSVRSMFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGD-ANVRY  165 (450)
Q Consensus        89 ~W~~~~--~~~~~~i~L~~~s~EY~~V~~~F~~g~~~~~~~~I~kIeRIqN~~l~aryq~fKk~m~~~~k~~G~-~Ner~  165 (450)
                      +||...  ...+++++|.++++||+.|+++|.+||+   +++|++|+||+|+.+|+||+.+|++|+.  ++++. .||++
T Consensus         1 ~wd~~~~~~~~~~l~~L~~~s~Ey~~v~~~f~~t~~---~~~I~~I~rv~n~~l~~~f~~~k~~~~~--~~~~~~~ne~~   75 (198)
T 2pqf_A            1 SMDSSALPDPGFQKITLSSSSEEYQKVWNLFNRTLP---FYFVQKIERVQNLALWEVYQWQKGQMQK--QNGGKAVDERQ   75 (198)
T ss_dssp             --------CCSCEEEECCTTSHHHHHHHHHHHTTCT---TSEEEEEEEEECHHHHHHHHHHHHHHHH--TTTTCCCCEEE
T ss_pred             CCCcCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhCC---CCEEEEEEEeCCHHHHHHHHHHHHHHHH--hcCCCCcceEE
Confidence            688654  4458899999999999999999999987   5899999999999999999999988874  34443 69999


Q ss_pred             EeecCChhhHHHHhhccCCCCCCCCCCCcccceeEeccCCCCCccCCccccCCCCcEEEEEEeeccCCccc-----cCCC
Q 013071          166 AWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEP-----LFPG  240 (450)
Q Consensus       166 LFHGTs~~~i~~I~~~GFd~~~a~~~g~~yG~GIYFAp~n~s~kS~~Y~~~d~~G~r~MfLcRVllGk~~~-----v~p~  240 (450)
                      |||||+.++++.||++||++++++.++++||+||||| ++++ +|++||.+++ |.++||||||++|++..     ..||
T Consensus        76 LfHGt~~~~~~~I~~~Gf~~~~~~~~g~~~G~GiYfa-~~~s-~S~~Y~~~~~-~~~~m~lcrV~~G~~~~~~~~~~~pp  152 (198)
T 2pqf_A           76 LFHGTSAIFVDAICQQNFDWRVCGVHGTSYGKGSYFA-RDAA-YSHHYSKSDT-QTHTMFLARVLVGEFVRGNASFVRPP  152 (198)
T ss_dssp             EEEECCGGGHHHHHHHCCCTTTTCCCSSCSCSSEEEE-SSHH-HHHTTCCCSS-SEEEEEEEEEECCSEEECCTTCSSCC
T ss_pred             EEecCCHHHHHHHHHhCCCCcccCCCCCcccCeEECc-CCcc-hhhhcccCCC-CceEEEEEEEecCCcccCCccccCCC
Confidence            9999999999999999999999988899999999999 4654 6999999887 89999999999999863     3344


Q ss_pred             CCCCCCCCCCCCccccCCCCCcEEEEEeCCCCccccceeEEEEEecC
Q 013071          241 TKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSS  287 (450)
Q Consensus       241 sk~~~ps~~~YDSvVd~~~nP~~yVVy~~~mNtqiyPeYLItyk~~~  287 (450)
                      .+.. ++++.||||||++.+|++||||+.+   ||||+|||+|+.+.
T Consensus       153 ~~~~-~~~~~yDSvv~~~~~~~e~VVy~~~---qiyP~YlI~y~~~~  195 (198)
T 2pqf_A          153 AKEG-WSNAFYDSCVNSVSDPSIFVIFEKH---QVYPEYVIQYTTSS  195 (198)
T ss_dssp             BCSC-C--CBCSEEESCSSSCCEEEESCGG---GEEEEEEEEEESCC
T ss_pred             CCCC-CCCCCcccCcCCCCCCCEEEEECCC---cEeeEEEEEEEcCC
Confidence            3322 3467899999999999999999955   99999999999875

>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense, immune system, transferase; 1.05A {Homo sapiens}

Probab=100.00  E-value=5.4e-41  Score=310.26  Aligned_cols=169  Identities=19%  Similarity=0.305  Sum_probs=148.0

Q ss_pred             eeEEEEcCCCChhHHHHHHHHHccCCCCCCCcEEEEEEecCHhHHHHHHHHHHHHHHHhhcCCCCceEEEeecCChhhHH
Q 013071           97 LVNKSVVVDDKLDSDSVRSMFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALS  176 (450)
Q Consensus        97 ~~~~i~L~~~s~EY~~V~~~F~~g~~~~~~~~I~kIeRIqN~~l~aryq~fKk~m~~~~k~~G~~Ner~LFHGTs~~~i~  176 (450)
                      .+++++|.++++||+.|+++|.+||+   +++|++|+||+|+.+|+||+.++++|.        .|+++|||||+.++++
T Consensus         4 ~~~l~~L~~~s~ey~~v~~~f~~t~~---~~~I~~I~rv~n~~~~~~f~~~k~~~~--------~n~~~l~HGt~~~~~~   72 (173)
T 2x5y_A            4 KYKLSEIHHLHPEYVRVSEHFKASMK---NFKIEKIKKIENSELLDKFTWKKSQMK--------EEGKLLFYATSRAYVE   72 (173)
T ss_dssp             CCEEEECCTTSHHHHHHHHHHHTTCT---TEEEEEEEEEECHHHHHHHHHHHHHHT--------CCCEEEEEEEEGGGHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHhHCC---CCEEeEEEEECCHHHHHHHHHHHHHHh--------hCcEEEEecCCcccHH
Confidence            36789999999999999999999996   699999999999999999999988764        3999999999999999


Q ss_pred             HHhhccCCCCCCCCCCCcccceeEeccCCCCCccCCccccCCCCcEEEEEEeeccCCccccCCCCCCCCCCCCCCCcccc
Q 013071          177 TMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVD  256 (450)
Q Consensus       177 ~I~~~GFd~~~a~~~g~~yG~GIYFAp~n~s~kS~~Y~~~d~~G~r~MfLcRVllGk~~~v~p~sk~~~ps~~~YDSvVd  256 (450)
                      .||++||+++.++.++++||+||||| .++ .+|++||.++. +.++||||||++|++....+...  .| +.+|||++|
T Consensus        73 ~I~~~Gf~~~~~~~~g~~~G~GiYfa-~~~-s~s~~Y~~~~~-~~~~m~lc~V~~G~~~~~~~~~~--~p-p~~ydSv~~  146 (173)
T 2x5y_A           73 SICSNNFDSFLHETHENKYGKGIYFA-KDA-IYSHKNCPYDA-KNVVMFVAQVLVGKFIEGNITYT--SP-PPQFDSCVD  146 (173)
T ss_dssp             HHHHHCCCHHHHCCSCSSSCSSEEEE-SSH-HHHHHHCCSCG-GGEEEEEEEECCCSEEECCTTCS--SC-CTTCCEEES
T ss_pred             HHHHhCCCCcccCCCcCCccCeEECC-CCh-hhHhhcCCCCC-CCeEEEEEEEecCccccCCcccC--CC-CCCCCceEC
Confidence            99999999887777899999999999 454 46999998877 56999999999999764333222  23 347999999


Q ss_pred             CCCCCcEEEEEeCCCCccccceeEEEEEe
Q 013071          257 DLQNPRHYIVWNMNMNTHIFPEFVVSFKF  285 (450)
Q Consensus       257 ~~~nP~~yVVy~~~mNtqiyPeYLItyk~  285 (450)
                      +..+|++||||+++   ||||+|||+|+.
T Consensus       147 ~~~~~~e~VV~~~~---q~~P~YlI~y~~  172 (173)
T 2x5y_A          147 TRSNPSVFVIFQKD---QVYPQYVIEYTE  172 (173)
T ss_dssp             CSSSCCEEEECCGG---GEEEEEEEEEEE
T ss_pred             CCCCCCEEEEEeCC---eEeEEEEEEEeC
Confidence            99999999999965   999999999985

>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* 4hlh_A* 4hki_A* 4hkn_A* 4hl5_A* ...

Probab=100.00  E-value=8e-40  Score=317.46  Aligned_cols=195  Identities=17%  Similarity=0.256  Sum_probs=149.7

Q ss_pred             ccccCCCCCCCCCCc---eeEEEEcCCCChhHHHHHHHHHccCCCC----------CCCcEEEEEEecCHhHHHHHHHHH
Q 013071           82 KLDETTGQNQNTKTS---LVNKSVVVDDKLDSDSVRSMFLMGMSPS----------SGVDILDVQRCSSASLLARFELFQ  148 (450)
Q Consensus        82 ~~~e~i~~W~~~~~~---~~~~i~L~~~s~EY~~V~~~F~~g~~~~----------~~~~I~kIeRIqN~~l~aryq~fK  148 (450)
                      .+.+....|+.+-..   .+++++|.++++||+.|+++|.+||.++          .+++|++|+||+|+.+|++|+++|
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~l~~L~~~s~Ey~~V~~~f~~T~~~~~~~~~~~~~~~~~~I~~I~rIqn~~l~~~y~~~k   91 (240)
T 3u9h_A           12 DLGTENLYFQSMLNTSGSGTILIDLSPDDKEFQSVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKLWERYTHRR   91 (240)
T ss_dssp             ------------------CCEEEECCTTSHHHHHHHHHHHHTCCCCTTTTTTTCSCSCEEEEEEEEEECHHHHHHHHHHH
T ss_pred             ceeecccccchhhcCCCCCeEEEECCCCCHHHHHHHHHHHhcccccccccccccccCCcEEEEEEEecCHhHHHHHHHHH
Confidence            344445677776432   4789999999999999999999999743          257999999999999999999999


Q ss_pred             HHHHHHhhcCCCCceEEEeecCChhhHHHHhhccCCCCCCCCCCCcccceeEeccCCCCCccCCccccC-----------
Q 013071          149 KQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVD-----------  217 (450)
Q Consensus       149 k~m~~~~k~~G~~Ner~LFHGTs~~~i~~I~~~GFd~~~a~~~g~~yG~GIYFAp~n~s~kS~~Y~~~d-----------  217 (450)
                      ++|+.  ++.+..||++|||||+  .++.||++||+++++. ++++||+||||| .+++ +|++||...           
T Consensus        92 ~~m~~--~~~~~~ne~~LfHGt~--~~~~I~~~Gf~~~~~~-~g~~~G~GiYfa-~~~s-~S~~y~~~~~~~~~~~~~~d  164 (240)
T 3u9h_A           92 KEVSE--ENHNHANERMLFHGSP--FVNAIIHKGFDERHAY-IGGMFGAGIYFA-ENSS-KSNQYVYGIGGGTGCPVHKD  164 (240)
T ss_dssp             HHHHH--TTTTCCCEEEEEECCT--THHHHHHHCCCGGGCB-TTSTTCSBEEEE-SSHH-HHHTTTTSGGGTTCCTTTCC
T ss_pred             HHHHH--hcCCCCceEEEEechH--hHHHHHHcCCCccccc-CCCcceeeEEec-CChh-hhhhhhhccccccccccccc
Confidence            99874  4566789999999998  5889999999998664 589999999999 4554 699998532           


Q ss_pred             ---CCCcEEEEEEeeccCCccccCCCCCCCCCCCCCCCccccCCCCC----cEEEEEeCCCCccccceeEEEEEecC
Q 013071          218 ---ENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNP----RHYIVWNMNMNTHIFPEFVVSFKFSS  287 (450)
Q Consensus       218 ---~~G~r~MfLcRVllGk~~~v~p~sk~~~ps~~~YDSvVd~~~nP----~~yVVy~~~mNtqiyPeYLItyk~~~  287 (450)
                         .++.++||||||++|++...........| +.+||||+|+..+|    ++||||+.+   ||||+|||+|+.++
T Consensus       165 ~~~~~~~~~mlLc~V~lG~~~~~~~~~~~~~p-P~gyDSvvg~~~~~~l~~~E~VVy~~~---qi~P~YlI~y~~~~  237 (240)
T 3u9h_A          165 RSCYICHRQLLFCRVTLGKSFLQFSAMKMAHS-PPGHHSVTGRPSVNGLALAEYVIYRGE---QAYPEYLITYQIMR  237 (240)
T ss_dssp             TTCSSSCEEEEEEEEECCSEEEEEECC--CCC-CTTCSEEEEEESSCTTCCCEEEESCGG---GEEEEEEEEEEECC
T ss_pred             cccccCceEEEEEEEecCceEeecCcccccCC-CCCCCceecCCCCCCCCCCEEEEEccc---ceeEEEEEEEEccC
Confidence               12689999999999999766543322222 35899999976655    599999966   99999999999865

>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A*

Probab=100.00  E-value=1.3e-33  Score=287.27  Aligned_cols=258  Identities=17%  Similarity=0.242  Sum_probs=177.1

Q ss_pred             hhhhhhccCCccccccceE-EEEEecc-cccccchhhhccchhhhhcccccccCCCC--Ccc-------------ceeee
Q 013071           10 KFTLMVMNHTSVHKLNIKL-QLEIDIA-GLDQSKLKECSGESNAFIKQIQIAPKPAS--NKY-------------VVEVE   72 (450)
Q Consensus        10 ~~~~~~~~~~~~~~~eikl-~~e~~~n-~~~~~kl~~~s~~s~~~~k~~~i~~~~~~--~~~-------------~vev~   72 (450)
                      |.-|+-+++++..+..--| +|+.-++ +....+|.+.|.+...+|+|-+...+|.-  ..-             |+|+.
T Consensus        34 k~PlGkLs~~qi~~~~~vL~~i~~~l~~~~~~~~l~~ls~~fyt~IPh~fg~~~p~~i~~~~~l~~k~~lle~L~die~A  113 (350)
T 1efy_A           34 KMPLGKLSKRQIQSAYSILNEVQQAVSDGGSESQILDLSNRFYTLIPHDFGMKKPPLLSNLEYIQAKVQMLDNLLDIEVA  113 (350)
T ss_dssp             TSCGGGCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCBCCCSSCCCCSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhHHhhcCccccCCCCCccCCHHHHHHHHHHHHHHHHHHHH
Confidence            4445666666665554211 1122222 23467899999999999999655444420  000             11111


Q ss_pred             cccccCCCCccccCCCCCCCCC-Cce-eEEEEcCCCChhHHHHHHHHHccCCC-CC--CCcEEEEEEecCHhHHHHHHHH
Q 013071           73 DSCNRKPDAKLDETTGQNQNTK-TSL-VNKSVVVDDKLDSDSVRSMFLMGMSP-SS--GVDILDVQRCSSASLLARFELF  147 (450)
Q Consensus        73 ~s~~~k~~~~~~e~i~~W~~~~-~~~-~~~i~L~~~s~EY~~V~~~F~~g~~~-~~--~~~I~kIeRIqN~~l~aryq~f  147 (450)
                      .+.....   ..+.-.+|-++. ..+ +.+++|.++++||+.|+++|..|+++ +.  +++|++|+||+|+.+|+||+.+
T Consensus       114 ~~l~~~~---~~~~~~~pld~~y~~L~~~l~~L~~~s~Ey~~I~~~~~~t~~~~h~~~~~~I~~I~rV~~~~~~~~f~~~  190 (350)
T 1efy_A          114 YSLLRGG---NEDGDKDPIDINYEKLRTDIKVVDKDSEEAKIIKQYVKNTHAATHNAYDLKVVEIFRIEREGESQRYKPF  190 (350)
T ss_dssp             HHHHHSC---CCCSSSCHHHHHHHHTCEEEEECCTTSHHHHHHHHHHHHTCCGGGCSEEEEEEEEEEEEETTHHHHHGGG
T ss_pred             HHHHhhc---ccCCCCChhHHHHHHhCCEEEEcCCCChHHHHHHHHHhcccCCCCCCCcccccceEEecCHHHHHHHHHh
Confidence            1111100   001112333322 111 57889999999999999999999863 22  3789999999999999999765


Q ss_pred             HHHHHHHhhcCCCCceEEEeecCChhhHHHHhhccCCCC--CCCCCCCcccceeEeccCCCCCccCCccccCC-CCcEEE
Q 013071          148 QKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHC--GASTTKSTYGIGVHLAAASCPDTSASYTDVDE-NGVRHM  224 (450)
Q Consensus       148 Kk~m~~~~k~~G~~Ner~LFHGTs~~~i~~I~~~GFd~~--~a~~~g~~yG~GIYFAp~n~s~kS~~Y~~~d~-~G~r~M  224 (450)
                      +          +..|+++|||||+.+++.+||++||++.  .++.+|++||+||||| +++ ++|++||.++. +|.++|
T Consensus       191 k----------~~~n~~~L~HGt~~~n~~~Il~~Gf~~~~~~~~~~g~~fG~GiYfa-~~~-skS~~Y~~~~~~~~~~~m  258 (350)
T 1efy_A          191 K----------QLHNRQLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFA-DMV-SKSANYCHTSQADPIGLI  258 (350)
T ss_dssp             G----------GSSCEEEEEEEECGGGHHHHHHHCSCCCCTTSCGGGSTTSSSEEEB-SSH-HHHHGGGCCCSSSCEEEE
T ss_pred             h----------ccCCeeEEEeCCchHHHHHHHHcCCCcccccCCCccCceecccccc-cch-hhhhccccCCCCCCeEEE
Confidence            3          2469999999999999999999999974  4556799999999999 454 47999998874 789999


Q ss_pred             EEEeeccCCccccCCCCCCCCCCCCCCCccccC-------------------------------CCCCcEEEEEeCCCCc
Q 013071          225 VLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDD-------------------------------LQNPRHYIVWNMNMNT  273 (450)
Q Consensus       225 fLcRVllGk~~~v~p~sk~~~ps~~~YDSvVd~-------------------------------~~nP~~yVVy~~~mNt  273 (450)
                      |||||++|++..+..... ....+.+|||+.+-                               ..++++||||+.+   
T Consensus       259 ~Lc~V~lG~~~~~~~~~~-~~~~p~g~~Sv~g~g~~~Pd~~~~~~~dgv~vP~G~~~~~~~~~~~l~~~EyVVYd~~---  334 (350)
T 1efy_A          259 LLGEVALGNMYELKNASH-ITKLPKGKHSVKGLGKTAPDPTATTTLDGVEVPLGNGISTGINDTCLLYNEYIVYDVA---  334 (350)
T ss_dssp             EEEEEECCSEEEESSCCC-CCSCCTTCCEEEECCSEEECGGGCEEETTEEECCSCEEECSCCSSSCSBCEEEESCGG---
T ss_pred             EEEEEecCCceeccCcch-hhhcCCCCcceeeccccCCCccccccCCCeeeecCcccCCCCCCCCCCCCEEEEEchh---
Confidence            999999999875432221 12223577775421                               2246899999977   


Q ss_pred             cccceeEEEEEec
Q 013071          274 HIFPEFVVSFKFS  286 (450)
Q Consensus       274 qiyPeYLItyk~~  286 (450)
                      ||||+|||+|+..
T Consensus       335 Qi~p~YLI~~~~~  347 (350)
T 1efy_A          335 QVNLKYLLKLKFN  347 (350)
T ss_dssp             GEEEEEEEEEEEE
T ss_pred             heeEEEEEEEEEE
Confidence            9999999999863

>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A*

Probab=99.97  E-value=1.8e-32  Score=279.55  Aligned_cols=256  Identities=15%  Similarity=0.182  Sum_probs=170.1

Q ss_pred             hhhhhhccCCccccccceE-EEEEeccccc--ccchhhhccchhhhhcccccccCCCCCccce----------------e
Q 013071           10 KFTLMVMNHTSVHKLNIKL-QLEIDIAGLD--QSKLKECSGESNAFIKQIQIAPKPASNKYVV----------------E   70 (450)
Q Consensus        10 ~~~~~~~~~~~~~~~eikl-~~e~~~n~~~--~~kl~~~s~~s~~~~k~~~i~~~~~~~~~~v----------------e   70 (450)
                      |.-|+-+++.+..+..--| +|+.-++...  ..+|.+.|.+.+.+|+|-+...+|. -..+.                |
T Consensus        40 k~PlGkLs~~qi~~g~~vL~~i~~~l~~~~~~~~~~~~ls~~fyt~IPh~fg~~~p~-~i~~~~~l~~k~~lle~l~di~  118 (357)
T 3c4h_A           40 KMPLGKLSKQQIARGFEALEALEEALKGPTDGGQSLEELSSHFYTVIPHNFGHSQPP-PINSPELLQAKKDMLLVLADIE  118 (357)
T ss_dssp             TSCTTTCCHHHHHHHHHHHHHHHHHHTSCCCSCCCHHHHHHHHHHHSCBCSTTSCCC-CCCSHHHHHHHHHHHHHHHHHH
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhcCcccCCCCCC-ccCCHHHHHHHHHHHHHHHHHH
Confidence            4455556666665543111 1111122222  3359999999999999976555542 11111                1


Q ss_pred             eecccccCCCCccc--cCCCCCCCCC-Cce-eEEEEcCCCChhHHHHHHHHHccCCCCCCCcEEEEEEecCHhHHHHHHH
Q 013071           71 VEDSCNRKPDAKLD--ETTGQNQNTK-TSL-VNKSVVVDDKLDSDSVRSMFLMGMSPSSGVDILDVQRCSSASLLARFEL  146 (450)
Q Consensus        71 v~~s~~~k~~~~~~--e~i~~W~~~~-~~~-~~~i~L~~~s~EY~~V~~~F~~g~~~~~~~~I~kIeRIqN~~l~aryq~  146 (450)
                      +........ ....  +...+|-++. ..+ +.+++|.++++||+.|+++|..|++.+..++|.+|+||+|+.+|+||+.
T Consensus       119 ~a~~l~~~~-~~~~~~~~~~~pld~~y~~L~~~l~~L~~~s~Ey~~I~~~f~~t~~~~~~~~I~~I~rV~n~~~~~rF~~  197 (357)
T 3c4h_A          119 LAQALQAVS-EQEKTVEEVPHPLDRDYQLLKCQLQLLDSGAPEYKVIQTYLEQTGSNHRCPTLQHIWKVNQEGEEDRFQA  197 (357)
T ss_dssp             HHHHHHCCC-HHHHHCSEECCHHHHHHHHHCCEEEECCTTSTTHHHHHHHHHHHSCSSSCCCEEEEEEEECTTSHHHHHT
T ss_pred             HHHHHHhhh-ccccccCCCCChhHHHHHHhCCEEEECCCCChHHHHHHHHHHhcCCCCCCccEEEEEEecCHHHHHHHHH
Confidence            111111100 0000  1114554432 111 4788999999999999999999954343489999999999999999987


Q ss_pred             HHHHHHHHhhcCCCCceEEEeecCChhhHHHHhhccCCCCCCCCCCCcccceeEeccCCCCCccCCccc--c-CCCCcEE
Q 013071          147 FQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTD--V-DENGVRH  223 (450)
Q Consensus       147 fKk~m~~~~k~~G~~Ner~LFHGTs~~~i~~I~~~GFd~~~a~~~g~~yG~GIYFAp~n~s~kS~~Y~~--~-d~~G~r~  223 (450)
                      +++          ..|+++|||||+.+++..||++||++  ++.+|++||+||||| .++ .+|++||.  + +.+|.++
T Consensus       198 ~k~----------~~n~~~LfHGt~~~~~~~I~~~Gf~~--~~~~g~~fG~GiYfa-~~~-skS~~Y~~~~~~~~~~~~~  263 (357)
T 3c4h_A          198 HSK----------LGNRKLLWHGTNMAVVAAILTSGLRI--MPHSGGRVGKGIYFA-SEN-SKSAGYVIGMKCGAHHVGY  263 (357)
T ss_dssp             TTT----------CCCEEEEEEEECHHHHHHHHHHCSCC--CTTCCCTTCSSEEEB-SSH-HHHHTTCCCEEETTEEEEE
T ss_pred             Hhc----------cCCeEEEEeCCChhhHHHHHHcCCcc--cCCCCCceECCEecC-Ccc-hhhhhhcccCCCCCCCeEE
Confidence            641          46999999999999999999999997  445899999999999 454 46999998  5 4568899


Q ss_pred             EEEEeeccCCccccCCCCCCCCCCCCCC---------------------Cc--cccC-------------CCCCcEEEEE
Q 013071          224 MVLCRVIMGNMEPLFPGTKQFHPSSEDF---------------------DS--GVDD-------------LQNPRHYIVW  267 (450)
Q Consensus       224 MfLcRVllGk~~~v~p~sk~~~ps~~~Y---------------------DS--vVd~-------------~~nP~~yVVy  267 (450)
                      ||||||++|++.....+......++.+|                     |+  |+..             ..++++||||
T Consensus       264 mllc~V~lG~~~~~~~~~~~~~~pP~g~dSv~g~g~~~P~~~~~~~~~~dg~~v~vp~G~~v~~~~~~~~~l~~nEyVVY  343 (357)
T 3c4h_A          264 MFLGEVALGREHHINTDNPSLKSPPPGFDSVIARGHTEPDPTQDTELELDGQQVVVPQGQPVPCPEFSSSTFSQSEYLIY  343 (357)
T ss_dssp             EEEEEEECCSEEEESSCCTTCSSCCTTCSEEEECCSEEECGGGCEEEEETTEEEEECCSCEEECGGGTTCSCSBCEEEES
T ss_pred             EEEEEEecCCceeccCCchhccCCCCCCCccceecCCCCCcccceeeccCCCeEEecCCCcccCCCCCCCccCCCEEEEE
Confidence            9999999999853322211100011244                     55  3311             1245799999


Q ss_pred             eCCCCccccceeEEEEE
Q 013071          268 NMNMNTHIFPEFVVSFK  284 (450)
Q Consensus       268 ~~~mNtqiyPeYLItyk  284 (450)
                      +.+   ||||+|||+|+
T Consensus       344 d~~---Qv~p~YLi~~k  357 (357)
T 3c4h_A          344 QES---QCRLRYLLEVH  357 (357)
T ss_dssp             SGG---GEEEEEEEEEC
T ss_pred             chh---heeEEEEEEEC
Confidence            976   99999999985

>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, S genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A

Probab=99.97  E-value=9.5e-32  Score=274.66  Aligned_cols=255  Identities=16%  Similarity=0.174  Sum_probs=175.8

Q ss_pred             hhhhhhccCCccccccceEE-EEEeccccc-ccchhhhccchhhhhcccccccCCCC--Ccccee-------------ee
Q 013071           10 KFTLMVMNHTSVHKLNIKLQ-LEIDIAGLD-QSKLKECSGESNAFIKQIQIAPKPAS--NKYVVE-------------VE   72 (450)
Q Consensus        10 ~~~~~~~~~~~~~~~eikl~-~e~~~n~~~-~~kl~~~s~~s~~~~k~~~i~~~~~~--~~~~ve-------------v~   72 (450)
                      |.-|+.+++.+..+..--|. |+.-++..+ .+.|.+.|.|.+.+|+|-+.+..|.-  +.-.++             +.
T Consensus        53 k~PLGkLSk~qI~~g~~vL~~i~~~l~~~~~~~~l~~lsn~fYtlIPh~fg~~~pp~I~~~~~l~~k~~lle~L~dieiA  132 (368)
T 3kjd_A           53 KAPLGKLTVAQIKAGYQSLKKIEDCIRAGQHGRALMEACNEFYTRIPHDFGLRTPPLIRTQKELSEKIQLLEALGDIEIA  132 (368)
T ss_dssp             TSCGGGCCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHSCBCCTTSCCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCccccCHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhCCccccCCCCCccCCHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666655542221 222233322 45699999999999999765544410  001111             10


Q ss_pred             cccccCCCCccccCCCCCCCCC-Cce-eEEEEcCCCChhHHHHHHHHHccCCC-CC--CCcEEEEEEecCHhHHHHHHHH
Q 013071           73 DSCNRKPDAKLDETTGQNQNTK-TSL-VNKSVVVDDKLDSDSVRSMFLMGMSP-SS--GVDILDVQRCSSASLLARFELF  147 (450)
Q Consensus        73 ~s~~~k~~~~~~e~i~~W~~~~-~~~-~~~i~L~~~s~EY~~V~~~F~~g~~~-~~--~~~I~kIeRIqN~~l~aryq~f  147 (450)
                      ......   .. ....+|-++. ..+ +++++|.++++||+.|+++|.+|+++ +.  +++|++|+||+|+.+|++|+  
T Consensus       133 ~~l~~~---~~-~~~~~pld~~Y~~L~~~l~~L~~~s~Ey~~I~~y~~~T~~~~h~~~~~~I~~IfrI~r~~e~~~F~--  206 (368)
T 3kjd_A          133 IKLVKT---EL-QSPEHPLDQHYRNLHCALRPLDHESYEFKVISQYLQSTHAPTHSDYTMTLLDLFEVEKDGEKEAFR--  206 (368)
T ss_dssp             HHHHC--------CCSCHHHHHHHHHTEEEEECCTTSHHHHHHHHHHHHTCCTTCTTCEEEEEEEEEEEETTHHHHSC--
T ss_pred             HHHHHh---cc-CCCCChhhHHHHhcCcEEEEcCCCChHHHHHHHHHHhcCCcccCcCceeEEEEEEecchHHHHHHh--
Confidence            111110   00 1112333322 112 57889999999999999999999974 22  47999999999999999996  


Q ss_pred             HHHHHHHhhcCCCCceEEEeecCChhhHHHHhhccCCCCC--CCCCCCcccceeEeccCCCCCccCCccccC-CCCcEEE
Q 013071          148 QKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCG--ASTTKSTYGIGVHLAAASCPDTSASYTDVD-ENGVRHM  224 (450)
Q Consensus       148 Kk~m~~~~k~~G~~Ner~LFHGTs~~~i~~I~~~GFd~~~--a~~~g~~yG~GIYFAp~n~s~kS~~Y~~~d-~~G~r~M  224 (450)
                      +          ...|+++|||||+.+++++||++||+++.  ++.+|++||+||||| +++ ++|++||.++ .+|.++|
T Consensus       207 k----------~~~N~~lLwHGT~~~n~~~Il~~Gf~~~~~~~~~~g~~fGkGIYFA-~~~-skS~~Y~~~~~~~~~~~m  274 (368)
T 3kjd_A          207 E----------DLHNRMLLWHGSRMSNWVGILSHGLRIAHPEAPITGYMFGKGIYFA-DMS-SKSANYCFASRLKNTGLL  274 (368)
T ss_dssp             T----------TCSCEEEEEEECCGGGHHHHHHHCSCCCCTTSCGGGSTTCSSEEEB-SSH-HHHHHTTCCCSSSCEEEE
T ss_pred             h----------cCCCceEEEeCCCHHHHHHHHHcCCCcccccccccCceeeeEEEcc-ccc-cccccccCCCCCCCeEEE
Confidence            1          13599999999999999999999999854  566899999999999 454 4799999887 6789999


Q ss_pred             EEEeeccCCccccCCCCCCCCCCCCCCCccccC----------------------------------CCCCcEEEEEeCC
Q 013071          225 VLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDD----------------------------------LQNPRHYIVWNMN  270 (450)
Q Consensus       225 fLcRVllGk~~~v~p~sk~~~ps~~~YDSvVd~----------------------------------~~nP~~yVVy~~~  270 (450)
                      |||||++|++............++.+|||+++-                                  .-+.+|||||+.+
T Consensus       275 lLc~V~lG~~~~~~~~~~~~~~pP~G~dSv~g~G~~~P~~~~~~~~dgv~vP~G~~~~~~~~~~~~~~L~ynEyIVYd~~  354 (368)
T 3kjd_A          275 LLSEVALGQCNELLEANPKAEGLLQGKHSTKGLGKMAPSSAHFVTLNGSTVPLGPASDTGILNPDGYTLNYNEYIVYNPN  354 (368)
T ss_dssp             EEEEEECCSEEEESSCCTTGGGGCTTCCEEEECEEEEECGGGCEEETTEEECCSCEEECCCCCSSSCCEEECEEEESSGG
T ss_pred             EEEEEecCCceeccccCcccccCCCCCceEEeeCCCcCCcccccccCCEEeeCCCcccCCCCCCcCccccCCceEEechh
Confidence            999999999975532221111123589998743                                  0134699999977


Q ss_pred             CCccccceeEEEEEe
Q 013071          271 MNTHIFPEFVVSFKF  285 (450)
Q Consensus       271 mNtqiyPeYLItyk~  285 (450)
                         |+.|.|||.++.
T Consensus       355 ---Qir~rYLv~v~~  366 (368)
T 3kjd_A          355 ---QVRMRYLLKVQF  366 (368)
T ss_dssp             ---GEEEEEEEEEEE
T ss_pred             ---HeeEEEEEEEEe
Confidence               999999999986

>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A

Probab=99.97  E-value=8.3e-31  Score=277.45  Aligned_cols=259  Identities=16%  Similarity=0.208  Sum_probs=177.8

Q ss_pred             hhhhhhccCCccccccce-EEEEEeccc-ccccchhhhccchhhhhcccccccCCCCCccc-eeeecc------------
Q 013071           10 KFTLMVMNHTSVHKLNIK-LQLEIDIAG-LDQSKLKECSGESNAFIKQIQIAPKPASNKYV-VEVEDS------------   74 (450)
Q Consensus        10 ~~~~~~~~~~~~~~~eik-l~~e~~~n~-~~~~kl~~~s~~s~~~~k~~~i~~~~~~~~~~-vev~~s------------   74 (450)
                      |.-|+-++.++..+.+-- .+|+.-++. ...++|.+.|.+.+.+|+|-+.+..|.- +.+ .++++.            
T Consensus       179 k~PLGkLS~~qI~~g~~vL~~i~~~l~~~~~~~~l~~lsn~fYtlIPh~fg~~~pp~-i~~~~~l~~k~~ll~~L~diei  257 (506)
T 4dqy_C          179 KMPLGKLSKRQIQAAYSILSEVQQAVSQGSSDSQILDLSNRFYTLIPHDFGMKKPPL-LNNADSVQAKAEMLDNLLDIEV  257 (506)
T ss_dssp             STTTSCBCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCBCCTTSCCCC-CCSHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCccCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhEeCCccccCCCCCc-cCCHHHHHHHHHHHHHHHHHHH
Confidence            344555555555554411 122222333 3456799999999999999765444411 111 111111            


Q ss_pred             ---cccCCCCccccCCCCCCCCCCc-eeEEEEcCCCChhHHHHHHHHHccCCC-CC--CCcEEEEEEecCHhHHHHHHHH
Q 013071           75 ---CNRKPDAKLDETTGQNQNTKTS-LVNKSVVVDDKLDSDSVRSMFLMGMSP-SS--GVDILDVQRCSSASLLARFELF  147 (450)
Q Consensus        75 ---~~~k~~~~~~e~i~~W~~~~~~-~~~~i~L~~~s~EY~~V~~~F~~g~~~-~~--~~~I~kIeRIqN~~l~aryq~f  147 (450)
                         ..+.. .. .+..+.-|..... .+++++|.++++||+.|+++|.+|+++ +.  +++|++|+||+|+.+|++|+.+
T Consensus       258 A~~l~~~~-~~-~~~~~pld~~Y~~L~~~l~~L~~~s~Ey~~I~~~~~~T~~~~h~~~~~~I~~I~rI~~~~e~~~f~~~  335 (506)
T 4dqy_C          258 AYSLLRGG-SD-DSSKDPIDVNYEKLKTDIKVVDRDSEEAEIIRKYVKNTHATTHNAYDLEVIDIFKIEREGECQRYKPF  335 (506)
T ss_dssp             HHHHHSCS-CC-CTTSCHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHTCCSSCTTCCCCEEEEEEEEETTTTTTTHHH
T ss_pred             HHHHHhhh-cc-CCCCCchHHHHHHhCcEEEECCCCChHHHHHHHHHHhccCcccccCCceeEeEEEEccHHHHhhHHHh
Confidence               11100 00 0001100000011 157889999999999999999999874 32  5899999999999999999876


Q ss_pred             HHHHHHHhhcCCCCceEEEeecCChhhHHHHhhccCCCC--CCCCCCCcccceeEeccCCCCCccCCccccCC-CCcEEE
Q 013071          148 QKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHC--GASTTKSTYGIGVHLAAASCPDTSASYTDVDE-NGVRHM  224 (450)
Q Consensus       148 Kk~m~~~~k~~G~~Ner~LFHGTs~~~i~~I~~~GFd~~--~a~~~g~~yG~GIYFAp~n~s~kS~~Y~~~d~-~G~r~M  224 (450)
                      +        .  ..|+++|||||+.+++++||++||+++  +++.+|.+||+||||| ++++ +|++||.++. +|.++|
T Consensus       336 k--------~--~~N~~lL~HGT~~~n~~~Il~~Gf~~~~~~a~~~G~~fGkGiYFA-~~as-kS~~Y~~~~~~~~~~~m  403 (506)
T 4dqy_C          336 K--------Q--LHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFA-DMVS-KSANYCHTSQGDPIGLI  403 (506)
T ss_dssp             H--------S--SSCEEEEEEECCTTTHHHHHHHCSCCCCSSSCCTTCSSCSSEEEB-SSHH-HHHTTSCCCSSSCEEEE
T ss_pred             h--------c--CCCceEEecCCChHhHHHHHhcCCCcCCccCCcCCceeeeeEEec-chhh-ccccccCCCCCCCeEEE
Confidence            4        1  359999999999999999999999985  5667889999999999 4554 6999999875 689999


Q ss_pred             EEEeeccCCccccCCCCCCCCCCCCCCCccccCC-------------------------------CCCcEEEEEeCCCCc
Q 013071          225 VLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDL-------------------------------QNPRHYIVWNMNMNT  273 (450)
Q Consensus       225 fLcRVllGk~~~v~p~sk~~~ps~~~YDSvVd~~-------------------------------~nP~~yVVy~~~mNt  273 (450)
                      |||||++|++........- ..++.+|||+++--                               .+.+|||||+..   
T Consensus       404 ll~~V~lG~~~~~~~~~~~-~~~p~G~dSv~g~g~~~P~p~~~~~~dGv~vP~G~~~~~~~~~~~l~ynEyiVYd~~---  479 (506)
T 4dqy_C          404 LLGEVALGNMYELKHASHI-SKLPKGKHSVKGLGKTTPDPSANISLDGVDVPLGTGISSGVNDTSLLYNEYIVYDIA---  479 (506)
T ss_dssp             EEEEEECCSEEEESSCCCC-SSCCTTCCEEEECCSEEECGGGCEESSSCEECCCCEEECSCCCCSCSBCEEEESSGG---
T ss_pred             EEEEEecCCceecccchhh-hccCCCCceEEeCCcCcCCcccccccCCeEEECCCcccCCCCCCcccccceEEEchH---
Confidence            9999999998655322211 12346899987531                               124799999977   


Q ss_pred             cccceeEEEEEecC
Q 013071          274 HIFPEFVVSFKFSS  287 (450)
Q Consensus       274 qiyPeYLItyk~~~  287 (450)
                      |+.|.|||.++..-
T Consensus       480 Qir~rYLv~v~~~~  493 (506)
T 4dqy_C          480 QVNLKYLLKLKFNF  493 (506)
T ss_dssp             GEEEEEEEEEECCC
T ss_pred             HeeEEEEEEEEEEc
Confidence            99999999999753

>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15, structural genomics structural genomics consortium, SGC; HET: 3AB; 2.70A {Homo sapiens}

Probab=99.25  E-value=1.5e-11  Score=121.16  Aligned_cols=175  Identities=13%  Similarity=0.132  Sum_probs=101.0

Q ss_pred             CCCCCCCceeEEEEcCCCChhHHHHHHHHHccCCCCCCCcEEEEEEec-CHhHHHHHHHHHHHHHHHhhcCCCCceEEEe
Q 013071           89 QNQNTKTSLVNKSVVVDDKLDSDSVRSMFLMGMSPSSGVDILDVQRCS-SASLLARFELFQKQLEITNKCRGDANVRYAW  167 (450)
Q Consensus        89 ~W~~~~~~~~~~i~L~~~s~EY~~V~~~F~~g~~~~~~~~I~kIeRIq-N~~l~aryq~fKk~m~~~~k~~G~~Ner~LF  167 (450)
                      +|--+.. ...+..+.+  .||..+.+.......  .......|++|. .....++|+..++          ..+..+||
T Consensus        85 ~WIL~~~-~~~l~~l~k--~ef~~l~~~~g~~~~--p~~~P~~If~V~~~~~~~~~f~~~~~----------~~~~~~~~  149 (277)
T 4f0d_A           85 SWILSSK-VLTIHSAGK--AEFEKIQKLTGAPHT--PVPAPDFLFEIEYFDPANAKFYETKG----------ERDLIYAF  149 (277)
T ss_dssp             HHHTCCS-SEEEEECCS--HHHHHHHHHTCSCSS--CCCCCSEEEEEEECTTHHHHHHHHHT----------TSCEEEEE
T ss_pred             HHHHhcC-CcceEecCH--HHHHHHHHHhCCCCC--CCCCCceeEEEecCcchhhHHHHhhc----------cCCcEEEE
Confidence            5555442 334444544  578888875433211  123445666665 4445677765431          24799999


Q ss_pred             ecCChhhHHHHhhccCCCCCCCCCCCcccceeEeccCCCCCccCCccccCC------CC--cEEEEEEeeccCCccc---
Q 013071          168 LATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDE------NG--VRHMVLCRVIMGNMEP---  236 (450)
Q Consensus       168 HGTs~~~i~~I~~~GFd~~~a~~~g~~yG~GIYFAp~n~s~kS~~Y~~~d~------~G--~r~MfLcRVllGk~~~---  236 (450)
                      ||++.+++.+|+++||+...  .+|.+||+||||| .+. .+|..||....      -|  .++|.||+|+..--..   
T Consensus       150 HGS~l~n~~sIL~~GL~~~~--~~g~~fG~GiY~a-~~~-~~S~~ys~~~~~W~~S~~g~~~~~valcEvv~~p~~k~q~  225 (277)
T 4f0d_A          150 HGSRLENFHSIIHNGLHCHL--NKTSLFGEGTYLT-SDL-SLALIYSPHGHGWQHSLLGPILSCVAVCEVIDHPDVKCQT  225 (277)
T ss_dssp             EECCGGGHHHHHHHCSCCC----CCCSSSCCEEEB-SCH-HHHHTTCCCEECCTTCTTCSEEEEEEEEEEECCCC-----
T ss_pred             cCCcHHHHHHHHhcccccCc--ccccccCCceEee-cch-HHHhhhccCCCCcCcccccccceEEEEEEEecCCcceeee
Confidence            99999999999999998753  4689999999999 454 46889985321      23  5899999999743211   


Q ss_pred             cCCCCCCC-CCCCCCCCccccCCCCCcEEEEEeCCCCccccceeEEEEEec
Q 013071          237 LFPGTKQF-HPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFS  286 (450)
Q Consensus       237 v~p~sk~~-~ps~~~YDSvVd~~~nP~~yVVy~~~mNtqiyPeYLItyk~~  286 (450)
                      ....+... ......+||.-+++- +..|||=+   |..+...||..|...
T Consensus       226 ~~~~~~~~~~~~~~~~~s~~~~~p-~~y~vV~n---~~~v~~rYllvy~~~  272 (277)
T 4f0d_A          226 KKKDSKEIDRRRARIKHSEGGDIP-PKYFVVTN---NQLLRVKYLLVYSQK  272 (277)
T ss_dssp             --------------------------CCEEECC---GGGEEEEEEEEEEC-
T ss_pred             eccccccccccccccccccCCCCC-CCEEEEEc---cceEEEEEEEEEccC
Confidence            11111110 112345667555542 34566666   459999999999763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	450
d1efya2	215	d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase	1e-13
d1gs0a2	217	d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase,	6e-09

>d1efya2 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 215

class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Poly(ADP-ribose) polymerase, C-terminal domain
domain: Poly(ADP-ribose) polymerase, C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 67.8 bits (165), Expect = 1e-13
 Identities = 27/198 (13%), Positives = 66/198 (33%), Gaps = 34/198 (17%)

Query: 108 LDSDS-----VRSMFLMGMSPS---SGVDILDVQRCSSASLLARFELFQKQLEITNKCRG 159
           +D DS     ++       + +     + ++++ R        R++ F++          
Sbjct: 8   VDKDSEEAKIIKQYVKNTHAATHNAYDLKVVEIFRIEREGESQRYKPFKQL--------- 58

Query: 160 DANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDE- 218
             N +  W  +     + ++  GL         + Y  G  +  A     SA+Y    + 
Sbjct: 59  -HNRQLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQA 117

Query: 219 NGVRHMVLCRVIMGNMEPLFPGTKQFHPS--------------SEDFDSGVDDLQNPRHY 264
           + +  ++L  V +GNM  L   +                         + +D ++ P   
Sbjct: 118 DPIGLILLGEVALGNMYELKNASHITKLPKGKHSVKGLGKTAPDPTATTTLDGVEVPLGN 177

Query: 265 IVWNMNMNTHI-FPEFVV 281
            +     +T + + E++V
Sbjct: 178 GISTGINDTCLLYNEYIV 195

>d1gs0a2 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 217

class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Poly(ADP-ribose) polymerase, C-terminal domain
domain: Poly(ADP-ribose) polymerase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.5 bits (128), Expect = 6e-09
 Identities = 26/218 (11%), Positives = 60/218 (27%), Gaps = 52/218 (23%)

Query: 108 LDSDS-----VRSMFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDAN 162
           LD +S     +        +P+     + +           FE+ ++  +   +     N
Sbjct: 8   LDHESNEFKVISQYLQSTHAPTHKDYTMTLLDV--------FEVEKEGEKEAFREDL-PN 58

Query: 163 VRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDE-NGV 221
               W  +       ++ +GL         + Y  G  +  A     SA+Y         
Sbjct: 59  RMLLWHGSRLSNWVGILSHGLRVAPPEAPITGYMFGKGIYFADMSSKSANYCFASRLKNT 118

Query: 222 RHMVLCRVIMGNMEPLFPGTKQFH------------------------------PSSEDF 251
             ++L  V +G    L     +                                P     
Sbjct: 119 GLLLLSEVALGQCNELLEANPKAQGLLRGKHSTKGMGKMAPSPAHFITLNGSTVPLGPAS 178

Query: 252 DSGVDDLQNPRH----YIVWNMNMNTHIFPEFVVSFKF 285
           D+G+ + +        +IV++      +   +++  +F
Sbjct: 179 DTGILNPEGYTLNYNEFIVYS---PNQVRMRYLLKIQF 213

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	450
d1efya2	215	Poly(ADP-ribose) polymerase, C-terminal domain {Ch	100.0
d1gs0a2	217	Poly(ADP-ribose) polymerase, C-terminal domain {Mo	99.97

>d1efya2 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Poly(ADP-ribose) polymerase, C-terminal domain
domain: Poly(ADP-ribose) polymerase, C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=7.2e-35  Score=275.69  Aligned_cols=173  Identities=17%  Similarity=0.304  Sum_probs=137.4

Q ss_pred             eEEEEcCCCChhHHHHHHHHHccCCCC-C--CCcEEEEEEecCHhHHHHHHHHHHHHHHHhhcCCCCceEEEeecCChhh
Q 013071           98 VNKSVVVDDKLDSDSVRSMFLMGMSPS-S--GVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGA  174 (450)
Q Consensus        98 ~~~i~L~~~s~EY~~V~~~F~~g~~~~-~--~~~I~kIeRIqN~~l~aryq~fKk~m~~~~k~~G~~Ner~LFHGTs~~~  174 (450)
                      .++.+|+++++||+.|+++|.+|+++. .  +++|++|+||+|+.+|++|+.+++          ..|+++|||||+.++
T Consensus         3 ~~i~~l~~~S~eyk~I~~~f~~t~~~~~~~~~~~I~~I~rI~~~~~~~~f~~~~~----------~~n~~~LfHGt~~~~   72 (215)
T d1efya2           3 TDIKVVDKDSEEAKIIKQYVKNTHAATHNAYDLKVVEIFRIEREGESQRYKPFKQ----------LHNRQLLWHGSRTTN   72 (215)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHTCCGGGCSEEEEEEEEEEEEETTHHHHHGGGGG----------SSCEEEEEEEECGGG
T ss_pred             CeEEECCCCCHHHHHHHHHHHhhCCCccCCCcceEEEEEEEcCcchHHHHHHhhc----------cCcEEEEEecCCHHH
Confidence            356789999999999999999998741 1  378999999999999999965431          369999999999999


Q ss_pred             HHHHhhccCCCCCC--CCCCCcccceeEeccCCCCCccCCccccC-CCCcEEEEEEeeccCCccccCCCCCCCCCCCCCC
Q 013071          175 LSTMIMYGLGHCGA--STTKSTYGIGVHLAAASCPDTSASYTDVD-ENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDF  251 (450)
Q Consensus       175 i~~I~~~GFd~~~a--~~~g~~yG~GIYFAp~n~s~kS~~Y~~~d-~~G~r~MfLcRVllGk~~~v~p~sk~~~ps~~~Y  251 (450)
                      +..||++||+++.+  ..+|++||+||||| ++ +.+|++||.++ .+|.++||||||++|++....++..-. +...+|
T Consensus        73 ~~~Il~~Gf~~~~~~~~~~g~~~G~GiYfa-~~-~s~S~~Y~~~~~~~~~~~mll~~V~lG~~~~~~~~~~~~-~~p~g~  149 (215)
T d1efya2          73 FAGILSQGLRIAPPEAPVTGYMFGKGIYFA-DM-VSKSANYCHTSQADPIGLILLGEVALGNMYELKNASHIT-KLPKGK  149 (215)
T ss_dssp             HHHHHHHCSCCCCTTSCGGGSTTSSSEEEB-SS-HHHHHGGGCCCSSSCEEEEEEEEEECCSEEEESSCCCCC-SCCTTC
T ss_pred             HHHHHHcCCCCCcccccccCcceeeeEEec-Cc-cchhhccccCCccCCeeEEEEEEEEecceEEecCccccc-cCCCCc
Confidence            99999999997654  45689999999999 45 45799999876 478999999999999987554432211 223455


Q ss_pred             Cccc---------------cCCCC----------------CcEEEEEeCCCCccccceeEEEEEec
Q 013071          252 DSGV---------------DDLQN----------------PRHYIVWNMNMNTHIFPEFVVSFKFS  286 (450)
Q Consensus       252 DSvV---------------d~~~n----------------P~~yVVy~~~mNtqiyPeYLItyk~~  286 (450)
                      ||+.               |++..                .+|||||+.+   |+||+|||+|+..
T Consensus       150 ~s~~~~g~~~pd~~~~~~~d~v~vP~g~~~~~~~~~~~~~~~EyVVy~~~---Q~~p~YLI~~k~~  212 (215)
T d1efya2         150 HSVKGLGKTAPDPTATTTLDGVEVPLGNGISTGINDTCLLYNEYIVYDVA---QVNLKYLLKLKFN  212 (215)
T ss_dssp             CEEEECCSEEECGGGCEEETTEEECCSCEEECSCCSSSCSBCEEEESCGG---GEEEEEEEEEEEE
T ss_pred             cccccccccCCChhhccccCCeeccCCCccccCCcCCccccCEEEEEech---hEeEEEEEEEEEE
Confidence            5543               33222                2689999977   9999999999875

>d1gs0a2 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Poly(ADP-ribose) polymerase, C-terminal domain
domain: Poly(ADP-ribose) polymerase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.4e-32  Score=258.86  Aligned_cols=172  Identities=16%  Similarity=0.239  Sum_probs=132.7

Q ss_pred             eEEEEcCCCChhHHHHHHHHHccCCCCC---CCcEEEEEEecCHhHHHHHHHHHHHHHHHhhcCCCCceEEEeecCChhh
Q 013071           98 VNKSVVVDDKLDSDSVRSMFLMGMSPSS---GVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGA  174 (450)
Q Consensus        98 ~~~i~L~~~s~EY~~V~~~F~~g~~~~~---~~~I~kIeRIqN~~l~aryq~fKk~m~~~~k~~G~~Ner~LFHGTs~~~  174 (450)
                      +++.+|.++++||+.|+++|.+|+++..   ..+|++|+||+++.+|++|..            ...|+++|||||+.++
T Consensus         3 c~i~~l~~~s~ey~~I~~~~~~t~~~~~~~~~~~I~~I~~v~r~~e~~~~~~------------~~~n~~~LfHGT~~~n   70 (217)
T d1gs0a2           3 CALRPLDHESNEFKVISQYLQSTHAPTHKDYTMTLLDVFEVEKEGEKEAFRE------------DLPNRMLLWHGSRLSN   70 (217)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHTCCTTCCSEEEEEEEEEEEEETTHHHHSCT------------TCSCEEEEEEEECGGG
T ss_pred             CEEEEcCCCCHHHHHHHHHHHhhCCCccCCCcceEEEEEEEcchhHHHHhhh------------cCCceEEEEecccHHH
Confidence            3567899999999999999999987521   268999999999999888731            2469999999999999


Q ss_pred             HHHHhhccCCCCCC--CCCCCcccceeEeccCCCCCccCCccccCC-CCcEEEEEEeeccCCccccC--------CCCC-
Q 013071          175 LSTMIMYGLGHCGA--STTKSTYGIGVHLAAASCPDTSASYTDVDE-NGVRHMVLCRVIMGNMEPLF--------PGTK-  242 (450)
Q Consensus       175 i~~I~~~GFd~~~a--~~~g~~yG~GIYFAp~n~s~kS~~Y~~~d~-~G~r~MfLcRVllGk~~~v~--------p~sk-  242 (450)
                      +.+||++||+++.+  +.+|++||+||||| +++ .+|+.||.++. +|.++||||||++|++....        ||.. 
T Consensus        71 ~~~Il~~Gf~~~~~~~~~~g~~fG~GiYfa-~~~-s~s~~y~~~~~~~~~~~m~l~~V~lG~~~~~~~~~~~~~~~p~g~  148 (217)
T d1gs0a2          71 WVGILSHGLRVAPPEAPITGYMFGKGIYFA-DMS-SKSANYCFASRLKNTGLLLLSEVALGQCNELLEANPKAQGLLRGK  148 (217)
T ss_dssp             HHHHHHHCSCCCCSSSCGGGSTTSSSEEEB-SCH-HHHHGGGCCCSSSCEEEEEEEEEECCSEEEESSCCTTGGGGCTTC
T ss_pred             HHHHHHcCCCCCCccCcccceeeeccceec-ccc-ccccccccCCcCCCeEEEEEEEEEecceeeeccCCcccccCCCCc
Confidence            99999999998654  45789999999999 454 56999998764 68899999999999974321        1100 


Q ss_pred             ---------CCC------------CCCCCCCccccCCCC----CcEEEEEeCCCCccccceeEEEEEec
Q 013071          243 ---------QFH------------PSSEDFDSGVDDLQN----PRHYIVWNMNMNTHIFPEFVVSFKFS  286 (450)
Q Consensus       243 ---------~~~------------ps~~~YDSvVd~~~n----P~~yVVy~~~mNtqiyPeYLItyk~~  286 (450)
                               ...            |.+..+||++++..+    .+|||||+.+   |+||+|||.|+..
T Consensus       149 ~sv~~~g~~~p~p~~~~~~~g~~vp~g~~~~s~~~~~~~~~l~~nEyVVy~~~---Qv~~~YLi~~k~~  214 (217)
T d1gs0a2         149 HSTKGMGKMAPSPAHFITLNGSTVPLGPASDTGILNPEGYTLNYNEFIVYSPN---QVRMRYLLKIQFN  214 (217)
T ss_dssp             SEEEECCSEECCGGGCEEETTEEECCSCCEECCCCCSSSCCCSBCEEEESCGG---GEEEEEEEEEEEE
T ss_pred             ceeeecccccCChhhccccCCeeccCCCccccCccCCCCCccccCeEEEEchh---heeEEEEEEEEEE
Confidence                     000            112234444444333    3679999987   9999999999864