Citrus Sinensis ID: 013077

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450
Protein Sequence
MEGHGVVGFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFFNAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKWVMHEYHSLNASSYPEFVLFRLKKKSGAKPDARNEPTPQDLAFDSGNRAIENTNPQINRGLPEEWQLFLSDTELDYNLLADSNGFHDNTFSELPPNIQPERGTSINSSVFDRILQPMVQPERGTSINSSVFDRILQPMVQPEHGTSYSDGFNNEPSFLNDSCLETSEQEEAFVNSLWADQGECFGERSMNTLRHDFNPTISLRGGRSIGQSSDADSKIYQQHGKVPGTSNVFYEKTHAQMETVWALSETSSSSEGYGIMDFDVSSVNSDTDLPGIVGHESVVDELQHTPKYHKYFEARCSTQELKTQRKVSDKAVSKVEVSMLK
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccEEcccccEEEEEEccEEcccccccccccccEEEEEEcccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccEEEEEEEccccHHHHHHHHcccccEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHHccccccccEEHHHHEHHccccccccHHccccccccEEEEEccccccccccccccccccccEEEEccccccEEcccccEEEEEEEEEEEcccccccccccEEEEEEEcccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccHcccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccHHccccccccccccccccccccccccccccccccEEEccccccccccccEEEEEEEEEcccEEEEEccccHHHccEEEEEccc
Coil and Loop (DISEMBL)
meghgvvgfrfhptDEEIVTYFLERkmcgldfpahtiadvvdvckyepwelpqrssmpkedrvwyffnapvpkyanskrinrttnsgfwkstckdREIWDERgkkiglkknlvfhegrvpngirTKWVMHEYhslnassypEFVLFRLKkksgakpdarneptpqdlafdsgnraientnpqinrglpeewqlflsdteldynlladsngfhdntfselppniqpergtsinssvfdrilqpmvqpergtsinssvfdrilqpmvqpehgtsysdgfnnepsflndscletsEQEEAFVNSLWAdqgecfgersmntlrhdfnptislrggrsigqssdadskiyqqhgkvpgtsnvfyEKTHAQMETVWALSetssssegygimdfdvssvnsdtdlpgivghesvvdelqhtpkyhKYFEARCSTQELKTQRKVSDKAVSKVEVSMLK
Flexible Loop (DISEMBL)
meghgvvgfrfhptdEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWElpqrssmpkedRVWYFFNApvpkyanskrinrttnsgfwkstckdreIWDErgkkiglkknlvfhegrvpngiRTKWVMHEYHSLNASSYPEFVLFRLKKKsgakpdarneptpqdlafdsgNRAIENtnpqinrglpEEWQLFLSDTELDYNLLADSNGFHDNTFSELPPNIQPERGTSINSSVFDRILQPMVQPERGTSINSSVFDRILQPMVQPEHGTSYSDGFNNEPSFLNDSCLETSEQEEAFVNSLWADQGECFGERSMNTLRHDFNPTISLRGGRSIGQSSDADSKIYQQHGKVPGTSNVFYEKTHAQMETVWALSETSSSSEGYGIMDFDVSSVNSDTDLPGIVGHESVVDELQHTPKYHKYFEArcstqelktqrkvsdkavskvevsmlk
Low Complexity Region (SEG)
MEGHGVVGFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFFNAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKWVMHEYHSLNASSYPEFVLFRLKKKSGAKPDARNEPTPQDLAFDSGNRAIENTNPQINRGLPEEWQLFLSDTELDYNLLADSNGFHDNTFSELPPNIQPERGTSINSSVFDRILQPMVQPERGTSINSSVFDRILQPMVQPEHGTSYSDGFNNEPSFLNDSCLETSEQEEAFVNSLWADQGECFGERSMNTLRHDFNPTISLRGGRSIGQSSDADSKIYQQHGKVPGTSNVFYEKTHAQMETVWALSETSSSSEGYGIMDFDVSSVNSDTDLPGIVGHESVVDELQHTPKYHKYFEARCSTQELKTQRKVSDKAVSKVEVSMLK
Disordered region (IsUnstruct)
*****VVGFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELP*******EDRVWYFFNAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKWVMHEYHSLNASSYPEFVLFRL**************************************LPEEWQLFLSDTELDYNLLADSNGFH************************************************************************************AFVNSLWADQGECFGERSMNTL************************************SNVFYEKTHAQMETVWAL*********YGIMDFDVSSVNSDTDLPGIVGHESVVDELQHTPKYHKYFEARC*************************
Disordered Region (DISOPRED)
**GHGVVGFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFFNAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKWVMHEYHSLNASSYPEFVLFRLK**************************************************************************************************************************************************EAFVNSLWADQ**************************************************************************************NSDTD***IV************PKYHKYFEARCSTQ**************KVEVSML*
Disordered Region (DISEMBL)
MEGHGVVGFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFFNAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKWVMHEYHSLNASSYPEFVLFRLKK************TPQDLAFDSGNRAIENTNPQINRGLPEEWQLFLSDTELDYNLLADSNGFHDNTFSELPPNIQPERGTSINSSVFDRILQPMVQPERGTSINSSVFDRILQPMVQPEHGTSYSDGFNNEPSFLNDSCLETSEQEEAFVNSLWADQGECFGERSMNTLRHDFNPTISLRGGRSIGQSSDADSKIYQQHGKVPGTSNVFYEKTHAQMETVW********SEGYGIMDFDVSSVNSDTDLPGIVGHESVVDELQHTPKYHKYFEARCST***********************
Disordered Region (DISPRO)
****GVVGFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFFNAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKWVMHEYHSLNASSYPEFVLFRLKKKSG***********************************************************************************DRILQPMVQPERGTSINSSVFDRILQPMVQPEHGTSYSDGFNNEPSFLNDSCLETSEQEEAFVNSLWADQGECF***S*NTLRHDFNPTISLRGGRSIGQSSDADSKIYQQHGKVPGTSNVFYEKTHAQME*VWA**************DFDVSSVNSDTDLPGIVGHESVVDELQHTPKYHKYFEARCSTQELKTQRKVSDKAVSKVEVS*L*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGHGVVGFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFFNAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKWVMHEYHSLNASSYPEFVLFRLKKKSGAKPDARNEPTPQDLAFDSGNRAIENTNPQINRGLPEEWQLFLSDTELDYNLLADSNGFHDNTFSELPPNIQPERGTSINSSVFDRILQPMVQPERGTSINSSVFDRILQPMVQPEHGTSYSDGFNNEPSFLNDSCLETSEQEEAFVNSLWADQGECFGERSMNTLRHDFNPTISLRGGRSIGQSSDADSKIYQQHGKVPGTSNVFYEKTHAQMETVWALSETSSSSEGYGIMDFDVSSVNSDTDLPGIVGHESVVDELQHTPKYHKYFEARCSTQELKTQRKVSDKAVSKVEVSMLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	450	2.2.26 [Sep-21-2011]
Q84K00	567	NAC domain-containing pro	no	no	0.326	0.259	0.477	2e-35
Q9FLJ2	336	NAC domain-containing pro	no	no	0.315	0.422	0.455	8e-31
Q9FRV4	310	Protein CUP-SHAPED COTYLE	no	no	0.32	0.464	0.448	9e-31
Q7GCL7	489	NAC domain-containing pro	no	no	0.335	0.308	0.440	2e-30
O04017	375	Protein CUP-SHAPED COTYLE	no	no	0.315	0.378	0.448	6e-30
Q9S851	334	Protein CUP-SHAPED COTYLE	no	no	0.328	0.443	0.420	2e-29
Q9M126	457	NAC domain-containing pro	no	no	0.284	0.280	0.453	3e-29
A2YMR0	425	NAC transcription factor	N/A	no	0.286	0.303	0.440	3e-29
A0SPJ8	406	NAC transcription factor	N/A	no	0.286	0.317	0.441	7e-29
Q8H4S4	425	NAC transcription factor	no	no	0.286	0.303	0.432	7e-29

>sp|Q84K00|NAC78_ARATH NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2

 Score =  150 bits (378), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 99/155 (63%), Gaps = 8/155 (5%)

Query: 8   GFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFF 67
           GFRFHPTDEE+V Y+L+RK+C   F    I+ V D+ K EPW+LP +S +   D  WYFF
Sbjct: 12  GFRFHPTDEELVRYYLKRKVCNKPFKFDAIS-VTDIYKSEPWDLPDKSKLKSRDLEWYFF 70

Query: 68  NAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKW 127
           +    KY+N  + NR T  G+WK+T KDREI +   + +G+KK LV+H+GR P G RT W
Sbjct: 71  SMLDKKYSNGSKTNRATEKGYWKTTGKDREIRN-GSRVVGMKKTLVYHKGRAPRGERTNW 129

Query: 128 VMHEYH----SLNASSYPE--FVLFRLKKKSGAKP 156
           VMHEY      L  +  P+  +VL R+ +KSG  P
Sbjct: 130 VMHEYRLSDEDLKKAGVPQEAYVLCRIFQKSGTGP 164

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLJ2|NC100_ARATH NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1

 Score =  135 bits (339), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 71/156 (45%), Positives = 99/156 (63%), Gaps = 14/156 (8%)

Query: 8   GFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFF 67
           GFRFHPTDEE++T++L +K+    F A  I +V D+ K EPWELP  + M +++  WYFF
Sbjct: 19  GFRFHPTDEELITHYLHKKVLDTSFSAKAIGEV-DLNKSEPWELPWMAKMGEKE--WYFF 75

Query: 68  NAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKK-IGLKKNLVFHEGRVPNGIRTK 126
                KY    R NR T +G+WK+T KD+EI+  RGK  +G+KK LVF+ GR P G +T 
Sbjct: 76  CVRDRKYPTGLRTNRATEAGYWKATGKDKEIY--RGKSLVGMKKTLVFYRGRAPKGQKTN 133

Query: 127 WVMHEY--------HSLNASSYPEFVLFRLKKKSGA 154
           WVMHEY        H+L  ++  E+V+ R+ +KS  
Sbjct: 134 WVMHEYRLEGKFSAHNLPKTAKNEWVICRVFQKSAG 169

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FRV4|NAC54_ARATH Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thaliana GN=NAC054 PE=1 SV=1

 Score =  135 bits (339), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 101/156 (64%), Gaps = 12/156 (7%)

Query: 8   GFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFF 67
           GFRFHPTDEE++TY+L +K+   +F    I+ V D+ K EPWELP+++ M +++  WYFF
Sbjct: 23  GFRFHPTDEELITYYLLKKVLDSNFSCAAISQV-DLNKSEPWELPEKAKMGEKE--WYFF 79

Query: 68  NAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKK-IGLKKNLVFHEGRVPNGIRTK 126
                KY    R NR T +G+WK+T KDREI   + K  +G+KK LVF++GR P G ++ 
Sbjct: 80  TLRDRKYPTGLRTNRATEAGYWKATGKDREIKSSKTKSLLGMKKTLVFYKGRAPKGEKSC 139

Query: 127 WVMHE--------YHSLNASSYPEFVLFRLKKKSGA 154
           WVMHE        YH +++S+  E+VL ++  KSG 
Sbjct: 140 WVMHEYRLDGKFSYHYISSSAKDEWVLCKVCLKSGV 175

Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Seems to act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7GCL7|NAC74_ORYSJ NAC domain-containing protein 74 OS=Oryza sativa subsp. japonica GN=NAC74 PE=2 SV=1

 Score =  134 bits (337), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 100/161 (62%), Gaps = 10/161 (6%)

Query: 8   GFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFF 67
           GF FHP D E+++++L++K+ G       I +V D+ K+EPW+LP +  +P +D  W+FF
Sbjct: 12  GFGFHPKDTELISHYLKKKIHGQKIEYEIIPEV-DIYKHEPWDLPAKCDVPTQDNKWHFF 70

Query: 68  NAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKK-IGLKKNLVFHEGRVPNGIRTK 126
            A   KY N  R NR T +G+WKST KDR I  + GK+ IG KK LVFHEGR P G RT+
Sbjct: 71  AARDRKYPNGSRSNRATVAGYWKSTGKDRAI--KMGKQTIGTKKTLVFHEGRPPTGRRTE 128

Query: 127 WVMHEYH--SLNASSYPE----FVLFRLKKKSGAKPDARNE 161
           W+MHEY+       + P+    +VL R+ K++   P   NE
Sbjct: 129 WIMHEYYIDERECQACPDMKDAYVLCRITKRNDWIPGNGNE 169

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O04017|NAC98_ARATH Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1

 Score =  132 bits (332), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 69/154 (44%), Positives = 101/154 (65%), Gaps = 12/154 (7%)

Query: 8   GFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFF 67
           GFRFHPTDEE++T++L RK+    F +  IA+V D+ K EPW+LP R+ M +++  WYFF
Sbjct: 20  GFRFHPTDEELITHYLLRKVLDGCFSSRAIAEV-DLNKCEPWQLPGRAKMGEKE--WYFF 76

Query: 68  NAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERG-KKIGLKKNLVFHEGRVPNGIRTK 126
           +    KY    R NR T +G+WK+T KDREI+  +    +G+KK LVF++GR P G ++ 
Sbjct: 77  SLRDRKYPTGLRTNRATEAGYWKATGKDREIFSSKTCALVGMKKTLVFYKGRAPKGEKSN 136

Query: 127 WVMHE--------YHSLNASSYPEFVLFRLKKKS 152
           WVMHE        YH ++ SS  E+V+ R+ +K+
Sbjct: 137 WVMHEYRLEGKFSYHFISRSSKDEWVISRVFQKT 170

Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S851|NAC31_ARATH Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thaliana GN=NAC031 PE=1 SV=1

 Score =  130 bits (328), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 100/157 (63%), Gaps = 9/157 (5%)

Query: 8   GFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFF 67
           GFRFHPTDEE++T++L  K+         I++V D+ + EPWELP+ + M   +R WYF+
Sbjct: 25  GFRFHPTDEELITFYLASKIFHGGLSGIHISEV-DLNRCEPWELPEMAKM--GEREWYFY 81

Query: 68  NAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKK-IGLKKNLVFHEGRVPNGIRTK 126
           +    KY    R NR T +G+WK+T KD+E++   G + +G+KK LVF++GR P G++TK
Sbjct: 82  SLRDRKYPTGLRTNRATTAGYWKATGKDKEVFSGGGGQLVGMKKTLVFYKGRAPRGLKTK 141

Query: 127 WVMHEY-----HSLNASSYPEFVLFRLKKKSGAKPDA 158
           WVMHEY     HS   +   E+V+ R+  K+G + + 
Sbjct: 142 WVMHEYRLENDHSHRHTCKEEWVICRVFNKTGDRKNV 178

Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M126|NAC69_ARATH NAC domain-containing protein 69 OS=Arabidopsis thaliana GN=NAC69 PE=2 SV=1

 Score =  129 bits (325), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/130 (45%), Positives = 85/130 (65%), Gaps = 2/130 (1%)

Query: 6   VVGFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWY 65
           +VG+RF+PT EE++ ++L+ K+ G  +        +++C Y+P  LP  S +  +D VWY
Sbjct: 5   LVGYRFYPTGEELINHYLKNKILGKTWLVDEAISEINICSYDPIYLPSLSKIKSDDPVWY 64

Query: 66  FFNAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKK--IGLKKNLVFHEGRVPNGI 123
           FF       A  K   RTT+SG+WK+T  DR+I D+RG +  IG+KK LV++EGRVP G+
Sbjct: 65  FFCPKEYTSAKKKVTKRTTSSGYWKATGVDRKIKDKRGNRGEIGIKKTLVYYEGRVPKGV 124

Query: 124 RTKWVMHEYH 133
            T WVMHEYH
Sbjct: 125 WTPWVMHEYH 134

Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis mediated by calpain or its functional homolog. Regulates cytokinin signaling during cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|A2YMR0|NAC10_ORYSI NAC transcription factor ONAC010 OS=Oryza sativa subsp. indica GN=ONAC010 PE=3 SV=1

 Score =  129 bits (325), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/134 (44%), Positives = 89/134 (66%), Gaps = 5/134 (3%)

Query: 8   GFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFF 67
           GFRFHPTDEE+V ++L++K   +  P   IA+V D+ K++PWELP++++  +++  WYFF
Sbjct: 32  GFRFHPTDEELVVHYLKKKAASVPLPVTIIAEV-DLYKFDPWELPEKANFGEQE--WYFF 88

Query: 68  NAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERG--KKIGLKKNLVFHEGRVPNGIRT 125
           +    KY N  R NR   SG+WK+T  D+ I       +K+G+KK LVF+ G+ P G++T
Sbjct: 89  SPRDRKYPNGARPNRAATSGYWKATGTDKPIMASGSTREKVGVKKALVFYRGKPPKGVKT 148

Query: 126 KWVMHEYHSLNASS 139
            W+MHEY   + SS
Sbjct: 149 NWIMHEYRLTDTSS 162

Transcription factor of the NAC family associated with male fertility.

Oryza sativa subsp. indica (taxid: 39946)

>sp|A0SPJ8|NAM1_HORVD NAC transcription factor NAM-1 OS=Hordeum vulgare var. distichum GN=NAM-1 PE=4 SV=1

 Score =  129 bits (323), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 60/136 (44%), Positives = 88/136 (64%), Gaps = 7/136 (5%)

Query: 8   GFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFF 67
           GFRFHPTDEE+V ++L++K      P   IA+V D+ K++PWELP++++  + +  WYFF
Sbjct: 38  GFRFHPTDEELVVHYLKKKAAKAPLPVTIIAEV-DLYKFDPWELPEKATFGEHE--WYFF 94

Query: 68  NAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERG----KKIGLKKNLVFHEGRVPNGI 123
           +    KYAN  R NR   SG+WK+T  D+ I         +K+G+KK LVF+ G+ P G+
Sbjct: 95  SPRDRKYANGARPNRAATSGYWKATGTDKPILASATGCGREKVGVKKALVFYRGKPPRGL 154

Query: 124 RTKWVMHEYHSLNASS 139
           +T W+MHEY    AS+
Sbjct: 155 KTNWIMHEYRLTGASA 170

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

>sp|Q8H4S4|NAC10_ORYSJ NAC transcription factor ONAC010 OS=Oryza sativa subsp. japonica GN=ONAC010 PE=2 SV=1

 Score =  128 bits (322), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 58/134 (43%), Positives = 89/134 (66%), Gaps = 5/134 (3%)

Query: 8   GFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFF 67
           GFRFHPTDEE+V ++L++K   +  P   IA+V D+ K++PW+LP++++  +++  WYFF
Sbjct: 32  GFRFHPTDEELVVHYLKKKAASVPLPVTIIAEV-DLYKFDPWDLPEKANFGEQE--WYFF 88

Query: 68  NAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERG--KKIGLKKNLVFHEGRVPNGIRT 125
           +    KY N  R NR   SG+WK+T  D+ I       +K+G+KK LVF+ G+ P G++T
Sbjct: 89  SPRDRKYPNGARPNRAATSGYWKATGTDKPIMSSGSTREKVGVKKALVFYRGKPPKGVKT 148

Query: 126 KWVMHEYHSLNASS 139
            W+MHEY   + SS
Sbjct: 149 NWIMHEYRLTDTSS 162

Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	450
356560207	1061	PREDICTED: uncharacterized protein LOC10	0.373	0.158	0.48	1e-36
356522462	497	PREDICTED: NAC domain-containing protein	0.373	0.338	0.462	3e-36
224063973	208	NAC domain protein, IPR003441 [Populus t	0.404	0.875	0.450	1e-35
359486687	559	PREDICTED: NAC domain-containing protein	0.326	0.262	0.483	1e-35
147802301	573	hypothetical protein VITISV_021988 [Viti	0.326	0.256	0.483	2e-35
225453680	560	PREDICTED: uncharacterized protein LOC10	0.726	0.583	0.318	2e-34
293336942	665	uncharacterized protein LOC100382324 [Ze	0.324	0.219	0.5	4e-34
242079615	670	hypothetical protein SORBIDRAFT_07g02390	0.324	0.217	0.5	5e-34
297829590	560	ANAC053 [Arabidopsis lyrata subsp. lyrat	0.326	0.262	0.483	6e-34
449449383	524	PREDICTED: NAC domain-containing protein	0.326	0.280	0.483	7e-34

>gi|356560207|ref|XP_003548385.1| PREDICTED: uncharacterized protein LOC100778755 [Glycine max]

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 84/175 (48%), Positives = 111/175 (63%), Gaps = 7/175 (4%)

Query: 4   HGVVGFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRV 63
           H  VGFRF PTDEE+V Y+L+ K+   DFP H I ++ D+CK EPW++P RS +  +D  
Sbjct: 10  HMPVGFRFRPTDEELVDYYLKHKLLADDFPVHIIPEI-DLCKVEPWDVPGRSVIKSDDPE 68

Query: 64  WYFFNAPVPKYANSKRINRTTNSGFWKSTCKDREI-WDERGKKIGLKKNLVFHEGRVPNG 122
           W+FF+    KY  SKR NRTT  GFWK+T  DR+I        IG KK LVFH+GRVP G
Sbjct: 69  WFFFSPVDYKYLKSKRFNRTTKRGFWKATGNDRKIRIPGTSNVIGTKKTLVFHQGRVPRG 128

Query: 123 IRTKWVMHEYHSLNA-SSYPEFVLFRLKKKSGAKPDARNEPTPQDLAFDSGNRAI 176
            +T WV+HEYH++ +  S   FVL RL KK+    + +NE   +  +FD G  +I
Sbjct: 129 AKTNWVIHEYHAVTSHESQRAFVLCRLMKKA----EKKNEGGIEAPSFDEGEPSI 179

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522462|ref|XP_003529865.1| PREDICTED: NAC domain-containing protein 69-like [Glycine max]

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 81/175 (46%), Positives = 110/175 (62%), Gaps = 7/175 (4%)

Query: 4   HGVVGFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRV 63
           H  VGFRF PTDEE+V Y+L+ K+   DFP H I ++ D+CK EPW++P+RS +  +D  
Sbjct: 11  HMPVGFRFRPTDEELVNYYLKHKLLADDFPVHIIPEI-DLCKVEPWDVPERSVIKSDDPE 69

Query: 64  WYFFNAPVPKYANSKRINRTTNSGFWKSTCKDREI-WDERGKKIGLKKNLVFHEGRVPNG 122
           W+FF+    KY  SKR NRTT  G+WK+T  DR +        IG KK LVFHEGR P G
Sbjct: 70  WFFFSPVDYKYLKSKRFNRTTKRGYWKTTGNDRNVKIPGTSNVIGTKKTLVFHEGRGPRG 129

Query: 123 IRTKWVMHEYHSLNA-SSYPEFVLFRLKKKSGAKPDARNEPTPQDLAFDSGNRAI 176
           ++T WV+HEYH++ +  S   FVL RL KK+    + +NE   +   FD G  ++
Sbjct: 130 VKTNWVIHEYHAVTSHESQRAFVLCRLMKKA----EKKNEGGIEAPTFDEGEPSV 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063973|ref|XP_002301328.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222843054|gb|EEE80601.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/204 (45%), Positives = 125/204 (61%), Gaps = 22/204 (10%)

Query: 7   VGFRFHPTDEEIVTYFLERKMCG-LDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWY 65
           VG+ FHPTDEE+V +FL+ KM G  D    TIA+V +VC YEPWELP  S++   D   Y
Sbjct: 13  VGYGFHPTDEELVNHFLKLKMIGGYDHVVSTIAEV-NVCNYEPWELPGLSAIQSNDPECY 71

Query: 66  FFNAPVPKYANSKRINRTTNSGFWKSTCKDREIWDER-GKKIGLKKNLVFHEGRVPNGIR 124
           FF+ P  KY+ S+R NRTT +G+WK T +DR I  +  G++I  KK LVF+ GRVPNG+R
Sbjct: 72  FFSRPNYKYSKSQRANRTTGAGYWKGTGRDRTITAKSTGEQIATKKTLVFYNGRVPNGVR 131

Query: 125 TKWVMHEYHSLNASSYP---EFVLFRLKKKSGAKPDARNEPTPQDL-AFDSGNRAIENTN 180
           T W+MHEY+     S+P   +F+L++LKK             P DL AFD G  +  N +
Sbjct: 132 TNWIMHEYNP--TFSFPNKRDFILYKLKKN------------PDDLPAFDEGESSASNVD 177

Query: 181 PQINRGLPEEWQLFLSDTELDYNL 204
            + ++ L  + + F    E DYNL
Sbjct: 178 EEDSQ-LRAQLESFSGIDEGDYNL 200

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486687|ref|XP_002265345.2| PREDICTED: NAC domain-containing protein 78-like [Vitis vinifera] gi|296085948|emb|CBI31389.3| unnamed protein product [Vitis vinifera]

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/155 (48%), Positives = 101/155 (65%), Gaps = 8/155 (5%)

Query: 8   GFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFF 67
           GFRFHPTDEE+V Y+L+RK+CG  F   TI+++ D+ K EPW+LP +S +   D  WYFF
Sbjct: 12  GFRFHPTDEELVWYYLKRKVCGKLFRFDTISEI-DIYKSEPWDLPGQSKLKSRDLEWYFF 70

Query: 68  NAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKW 127
           +    KY N  R NR T+ G+WK+T KDRE+   R + +G+KK LV+H GR P G RT W
Sbjct: 71  SVLDKKYGNGSRTNRATDRGYWKTTGKDREV-RHRARTVGMKKTLVYHSGRAPRGERTNW 129

Query: 128 VMHEYHSLN------ASSYPEFVLFRLKKKSGAKP 156
           VMHEY  ++        +   FVL R+ +KSG+ P
Sbjct: 130 VMHEYRLMDEELKKTGVAQDAFVLCRIFQKSGSGP 164

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802301|emb|CAN70406.1| hypothetical protein VITISV_021988 [Vitis vinifera]

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/155 (48%), Positives = 101/155 (65%), Gaps = 8/155 (5%)

Query: 8   GFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFF 67
           GFRFHPTDEE+V Y+L+RK+CG  F   TI+++ D+ K EPW+LP +S +   D  WYFF
Sbjct: 12  GFRFHPTDEELVWYYLKRKVCGKLFRFDTISEI-DIYKSEPWDLPGQSKLKSRDLEWYFF 70

Query: 68  NAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKW 127
           +    KY N  R NR T+ G+WK+T KDRE+   R + +G+KK LV+H GR P G RT W
Sbjct: 71  SVLDKKYGNGSRTNRATDRGYWKTTGKDREV-RHRARTVGMKKTLVYHSGRAPRGERTNW 129

Query: 128 VMHEYHSLN------ASSYPEFVLFRLKKKSGAKP 156
           VMHEY  ++        +   FVL R+ +KSG+ P
Sbjct: 130 VMHEYRLMDEELKKTGVAQDAFVLCRIFQKSGSGP 164

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453680|ref|XP_002268892.1| PREDICTED: uncharacterized protein LOC100252386 [Vitis vinifera]

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 122/383 (31%), Positives = 177/383 (46%), Gaps = 56/383 (14%)

Query: 7   VGFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYF 66
           VGFRFHPTDEE+V ++L+ K+ G++     I +V DVCK+EPW+LP  S +   D  W+F
Sbjct: 16  VGFRFHPTDEELVDHYLKLKILGMNSHVDIIPEV-DVCKWEPWDLPVLSVIQTNDPEWFF 74

Query: 67  FNAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKK-IGLKKNLVFHEGRVPNGIRT 125
           F  P  KY   +R NR T +G+WK T KDR I     K+ +G KK LVF+ GR P  +RT
Sbjct: 75  FCPPDYKYPTGRRSNRATEAGYWKPTGKDRNIKSRATKELLGTKKTLVFYRGRAPQSVRT 134

Query: 126 KWVMHEYHSLNAS--SYPEFVLFRLKKKSGAKPDARNEPTPQDLAFDSGNRAIENTNPQI 183
            WVMHEY +  AS  +   +VL RLK+K+                        ENT P I
Sbjct: 135 NWVMHEYRAAIASLPANKAYVLCRLKRKTD-----------------------ENTGPDI 171

Query: 184 NRGLPEEWQLFLSDTELDYNLLADSNGFHDNTFSELPPNIQPERGT-SINSSVFDRILQP 242
                    +F  D   +   L      H +  +    N Q E  T  ++  + D   +P
Sbjct: 172 PPETNVNGIVFNMDGLANMVTLGGEPSHHASISASNIGNYQVEEPTPEMDPLIQDLFNEP 231

Query: 243 MVQPERGTSINSSVFDRILQPMVQPEHGTSYSDGFNN--EPSFLNDSCLETSEQEEAFVN 300
              P        + +D        P     +++GFNN  E +   D   E  +    F+N
Sbjct: 232 TFIP--------ADYDFSSDTEQGPHLDLPFANGFNNVCERTLFQDGSSEPDDDVSRFLN 283

Query: 301 SLWADQ-----GECFGERS----MNTLRH------DFNPTISLRG--GRSIGQSSDADSK 343
           +L  DQ     GE   +RS       LR+         P   L+G  G+  G SSD D++
Sbjct: 284 TLIVDQDEHPFGELASQRSSPVDSGNLRYGSIGKLSARPQSPLKGVYGKGGGSSSDTDTE 343

Query: 344 IYQ-QHGKVPGTSNVFYEKTHAQ 365
           + Q Q+ +   TS++    +H++
Sbjct: 344 VLQVQYSQSRKTSSLINGVSHSK 366

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|293336942|ref|NP_001168544.1| uncharacterized protein LOC100382324 [Zea mays] gi|223949061|gb|ACN28614.1| unknown [Zea mays] gi|413921743|gb|AFW61675.1| putative NAC domain transcription factor superfamily protein [Zea mays]

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 77/154 (50%), Positives = 101/154 (65%), Gaps = 8/154 (5%)

Query: 8   GFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFF 67
           GFRFHPTDEE+V+Y+L+RK+ G       IADV D+ K EPW+LP RS +   D  WYFF
Sbjct: 29  GFRFHPTDEELVSYYLKRKVLGRPLKVDAIADV-DLYKLEPWDLPARSRLRSRDSQWYFF 87

Query: 68  NAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKK-IGLKKNLVFHEGRVPNGIRTK 126
           +    K+AN  R NR T+ G+WK+T KDRE+    G + +G+KK LVFH GR P G RT 
Sbjct: 88  SRLDRKHANRARTNRATSGGYWKTTGKDREV--RHGPRLVGMKKTLVFHAGRAPKGERTN 145

Query: 127 WVMHEYH--SLNASSYPE--FVLFRLKKKSGAKP 156
           WVMHEY     +A+  P+  FV+ R+ +K+G  P
Sbjct: 146 WVMHEYRLEGDDAAGIPQDSFVVCRIFQKAGPGP 179

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242079615|ref|XP_002444576.1| hypothetical protein SORBIDRAFT_07g023900 [Sorghum bicolor] gi|241940926|gb|EES14071.1| hypothetical protein SORBIDRAFT_07g023900 [Sorghum bicolor]

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 77/154 (50%), Positives = 102/154 (66%), Gaps = 8/154 (5%)

Query: 8   GFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFF 67
           GFRFHPTDEE+V+Y+L+RK+ G       IA+V D+ K EPW+LP RS +   D  WYFF
Sbjct: 35  GFRFHPTDEELVSYYLKRKVLGRPLKVDAIAEV-DLYKVEPWDLPARSRLRSRDSQWYFF 93

Query: 68  NAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKK-IGLKKNLVFHEGRVPNGIRTK 126
           +    K+AN  R NR T+SG+WK+T KDRE+    G + +G+KK LVFH GR P G RT 
Sbjct: 94  SRLDRKHANRARTNRATSSGYWKTTGKDREV--RHGPRVVGMKKTLVFHAGRAPKGERTN 151

Query: 127 WVMHEYH--SLNASSYPE--FVLFRLKKKSGAKP 156
           WVMHEY     +A+  P+  FV+ R+ +K+G  P
Sbjct: 152 WVMHEYRLEGDDAAGIPQDSFVVCRIFQKAGPGP 185

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829590|ref|XP_002882677.1| ANAC053 [Arabidopsis lyrata subsp. lyrata] gi|297328517|gb|EFH58936.1| ANAC053 [Arabidopsis lyrata subsp. lyrata]

 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 75/155 (48%), Positives = 97/155 (62%), Gaps = 8/155 (5%)

Query: 8   GFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFF 67
           GFRFHPTDEE+V Y+L+RK+C   F    I+ V DV K EPW+LP +S +   D  WYFF
Sbjct: 12  GFRFHPTDEELVRYYLKRKICNKPFKFDAIS-VTDVYKSEPWDLPDKSKLKSRDLEWYFF 70

Query: 68  NAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKW 127
           +    KY N  + NR T  G+WK+T KDREI +   K +G+KK LV+H+GR P G RT W
Sbjct: 71  SMLDKKYRNGSKTNRATEMGYWKTTGKDREILN-GSKVVGMKKTLVYHKGRAPRGERTNW 129

Query: 128 VMHEYHSLN------ASSYPEFVLFRLKKKSGAKP 156
           VMHEY  ++            FVL R+ +KSG+ P
Sbjct: 130 VMHEYRLVDEDLDKTGVHQDAFVLCRIFQKSGSGP 164

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449383|ref|XP_004142444.1| PREDICTED: NAC domain-containing protein 78-like [Cucumis sativus]

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 75/155 (48%), Positives = 97/155 (62%), Gaps = 8/155 (5%)

Query: 8   GFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFF 67
           GFRFHPTDEE+V+Y+L+RK+ G  F    I+ V+D+ K EPW+LP +S +   D  WYFF
Sbjct: 12  GFRFHPTDEELVSYYLKRKVSGKPFRFDPIS-VIDIYKSEPWDLPGKSKLKSRDLEWYFF 70

Query: 68  NAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKW 127
           +A   KY NS R NR T  G+WK+T KDR +     + +G+KK LV+H GR P G RT W
Sbjct: 71  SALDKKYGNSSRTNRATEKGYWKTTGKDRPVR-HSARTVGMKKTLVYHIGRAPRGARTNW 129

Query: 128 VMHEYHSLN------ASSYPEFVLFRLKKKSGAKP 156
           VMHEY   +      A     FVL R+ +KSG  P
Sbjct: 130 VMHEYKLTDEEMGKIAIVQDAFVLCRIFQKSGTGP 164

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	450
TAIR|locus:2167155	476	NAC086 "NAC domain containing	0.362	0.342	0.437	4e-37
TAIR|locus:2095007	314	NAC058 "NAC domain containing	0.655	0.939	0.329	5.7e-36
TAIR|locus:2184342	567	NAC2 "NAC domain containing pr	0.324	0.257	0.480	1.6e-35
TAIR|locus:2009729	631	NAC028 "NAC domain containing	0.273	0.194	0.488	1.8e-35
TAIR|locus:2097720	479	NAC045 "NAC domain containing	0.362	0.340	0.460	1.9e-35
TAIR|locus:2075815	549	NAC053 "AT3G10500" [Arabidopsi	0.326	0.267	0.490	3.1e-35
TAIR|locus:2009096	557	NAC017 "NAC domain containing	0.326	0.263	0.483	3.5e-35
TAIR|locus:2160324	329	NAC080 "NAC domain containing	0.317	0.434	0.462	5e-35
TAIR|locus:2061082	316	NAC038 "NAC domain containing	0.597	0.851	0.343	6.5e-35
TAIR|locus:2020123	301	NAC020 "NAC domain containing	0.337	0.504	0.452	8.3e-35

TAIR|locus:2167155 NAC086 "NAC domain containing protein 86" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
 Identities = 77/176 (43%), Positives = 105/176 (59%)

Query:     8 GFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFF 67
             GFRFHPTDEE++TY+L+RK+ G +     I +V D+ K EPW+LP +S +P +D+ W+FF
Sbjct:     9 GFRFHPTDEELITYYLKRKINGQEIELEIIPEV-DLYKCEPWDLPGKSLIPSKDQEWFFF 67

Query:    68 NAPVPKYANSKRINRTTNSGFWKSTCKDREI-WDERGKKIGLKKNLVFHEGRVPNGIRTK 126
             +    KY N  R NR T  G+WK+T KDR + W +R   IG KK LV++ GR P+GIRT 
Sbjct:    68 SPRDRKYPNGSRTNRATKGGYWKATGKDRRVSWRDRA--IGTKKTLVYYRGRAPHGIRTG 125

Query:   127 WVMHEYHSLNASSYPE-------FVLFRLKKKS--GAKPDARNEPTPQDLAFDSGN 173
             WVMHEY    +   P        + L R+ KK    AKP  +++   Q     S N
Sbjct:   126 WVMHEYRLDESECEPSAFGMQDAYALCRVFKKIVIEAKPRDQHQQQHQPYVHTSSN 181

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2095007 NAC058 "NAC domain containing protein 58" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 106/322 (32%), Positives = 169/322 (52%)

Query:     1 MEGHGVVGFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKE 60
             ME +   GFRFHPTDEE++T++L RK+  + F    + DV D+ K EPW+LP ++SM ++
Sbjct:     1 MEENLPPGFRFHPTDEELITHYLCRKVSDIGFTGKAVVDV-DLNKCEPWDLPAKASMGEK 59

Query:    61 DRVWYFFNAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVP 120
             +  WYFF+    KY    R NR T +G+WK+T KD+EI+   G  +G+KK LVF++GR P
Sbjct:    60 E--WYFFSQRDRKYPTGLRTNRATEAGYWKTTGKDKEIY-RSGVLVGMKKTLVFYKGRAP 116

Query:   121 NGIRTKWVMHEYH-----SLNASSYPEFVLFRLKKKS-GAKPDARNEPTPQDLAFDS--- 171
              G ++ WVMHEY        N ++  E+V+ R+ +KS  AK     +P     +F S   
Sbjct:   117 KGEKSNWVMHEYRLESKQPFNPTNKEEWVVCRVFEKSTAAKKAQEQQPQSSQPSFGSPCD 176

Query:   172 GNRAIENTNPQINRGLPEEWQLFLSDTELDYN----LLADSNGF-HDNTFSELPPNIQPE 226
              N ++ N    I+  LP    L  + + +DYN      +  N +  DNT S    N+   
Sbjct:   177 ANSSMANEFEDIDE-LPN---LNSNSSTIDYNNHIHQYSQRNVYSEDNTTSTAGLNMNMN 232

Query:   227 RGTSINSSVFDRILQPMVQPERGTSINS-SVFDRILQP--MVQPEHGTSYSDGFNNE-PS 282
               ++   S    +L P + P     + +  + +    P  M+   + +S   G +N   +
Sbjct:   233 MASTNLQSWTTSLLGPPLSPINSLLLKAFQIRNSYSFPKEMIPSFNHSSLQQGVSNMIQN 292

Query:   283 FLNDSCLETSEQEEAF-VNSLW 303
               + S ++   QEEAF ++S+W
Sbjct:   293 ASSSSQVQPQPQEEAFNMDSIW 314

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2184342 NAC2 "NAC domain containing protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 1.6e-35, P = 1.6e-35
 Identities = 75/156 (48%), Positives = 99/156 (63%)

Query:     8 GFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFF 67
             GFRFHPTDEE+V Y+L+RK+C   F    I+ V D+ K EPW+LP +S +   D  WYFF
Sbjct:    12 GFRFHPTDEELVRYYLKRKVCNKPFKFDAIS-VTDIYKSEPWDLPDKSKLKSRDLEWYFF 70

Query:    68 NAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKKI-GLKKNLVFHEGRVPNGIRTK 126
             +    KY+N  + NR T  G+WK+T KDREI    G ++ G+KK LV+H+GR P G RT 
Sbjct:    71 SMLDKKYSNGSKTNRATEKGYWKTTGKDREI--RNGSRVVGMKKTLVYHKGRAPRGERTN 128

Query:   127 WVMHEYH----SLNASSYPE--FVLFRLKKKSGAKP 156
             WVMHEY      L  +  P+  +VL R+ +KSG  P
Sbjct:   129 WVMHEYRLSDEDLKKAGVPQEAYVLCRIFQKSGTGP 164

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0009644 "response to high light intensity" evidence=IEP

GO:0009962 "regulation of flavonoid biosynthetic process" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2009729 NAC028 "NAC domain containing protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 1.8e-35, Sum P(3) = 1.8e-35
 Identities = 61/125 (48%), Positives = 84/125 (67%)

Query:     8 GFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFF 67
             GFRFHPTDEE+V Y+L+RK+ G       I ++ D+ K EPW+LP +S +P +D  W+FF
Sbjct:     9 GFRFHPTDEELVIYYLKRKINGRTIELEIIPEI-DLYKCEPWDLPGKSLLPSKDLEWFFF 67

Query:    68 NAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKW 127
             +    KY N  R NR T +G+WK+T KDR++     + +G KK LV++ GR P+G RT W
Sbjct:    68 SPRDRKYPNGSRTNRATKAGYWKATGKDRKV-TSHSRMVGTKKTLVYYRGRAPHGSRTDW 126

Query:   128 VMHEY 132
             VMHEY
Sbjct:   127 VMHEY 131

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2097720 NAC045 "NAC domain containing protein 45" [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 81/176 (46%), Positives = 109/176 (61%)

Query:     8 GFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFF 67
             GFRFHPTDEE++TY+L+RK+ GL+     IA+V D+ K EPW+LP +S +P +D+ WYFF
Sbjct:     9 GFRFHPTDEELITYYLKRKINGLEIELEVIAEV-DLYKCEPWDLPGKSLLPSKDQEWYFF 67

Query:    68 NAPVPKYANSKRINRTTNSGFWKSTCKDREI-WDERGKKIGLKKNLVFHEGRVPNGIRTK 126
             +    KY N  R NR T  G+WK+T KDR + W +R   IG KK LV++ GR P+GIRT 
Sbjct:    68 SPRDRKYPNGSRTNRATKGGYWKATGKDRRVSWRDRA--IGTKKTLVYYRGRAPHGIRTG 125

Query:   127 WVMHEYH----SLNASSY---PEFVLFRLKKKS--GAKPDARNEPTPQDLAFDSGN 173
             WVMHEY         S+Y     + L R+ KK    AKP  ++      ++  SGN
Sbjct:   126 WVMHEYRLDETECEPSAYGMQDAYALCRVFKKIVIEAKPRDQHRSYVHAMSNVSGN 181

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2075815 NAC053 "AT3G10500" [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 76/155 (49%), Positives = 99/155 (63%)

Query:     8 GFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFF 67
             GFRFHPTDEE+V Y+L+RK+C   F    I+ V DV K EPW+LP +S +   D  WYFF
Sbjct:    12 GFRFHPTDEELVRYYLKRKICNKPFKFDAIS-VTDVYKSEPWDLPDKSRLKSRDLEWYFF 70

Query:    68 NAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKW 127
             +    KY N  + NR T  G+WK+T KDREI +   K +G+KK LV+H+GR P G RT W
Sbjct:    71 SMLDKKYRNGSKTNRATEMGYWKTTGKDREILNG-SKVVGMKKTLVYHKGRAPRGERTNW 129

Query:   128 VMHEYH----SLNASSYPE--FVLFRLKKKSGAKP 156
             VMHEY      L+ +   +  FVL R+ +KSG+ P
Sbjct:   130 VMHEYRLVDQDLDKTGVHQDAFVLCRIFQKSGSGP 164

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009819 "drought recovery" evidence=IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IMP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2009096 NAC017 "NAC domain containing protein 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 3.5e-35, Sum P(2) = 3.5e-35
 Identities = 75/155 (48%), Positives = 98/155 (63%)

Query:     8 GFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFF 67
             GFRFHPTDEE+V Y+L+RK+C      + I  VVDV K +P ELP +S +   DR W++F
Sbjct:    19 GFRFHPTDEELVMYYLKRKICRKRLRVNVIG-VVDVYKMDPEELPGQSMLKTGDRQWFYF 77

Query:    68 NAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKW 127
                  KY N+ R NR T +G+WK+T KDR I +   + +GLKK LVF+ GR P+G RT W
Sbjct:    78 TPRSRKYPNAARSNRGTENGYWKATGKDRVI-EYNSRSVGLKKTLVFYRGRAPSGERTDW 136

Query:   128 VMHEY----HSLNASSYPE--FVLFRLKKKSGAKP 156
             VMHEY      L     P+  + L++L KKSGA P
Sbjct:   137 VMHEYTMDEDELGRCKNPQEYYALYKLFKKSGAGP 171

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

TAIR|locus:2160324 NAC080 "NAC domain containing protein 80" [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
 Identities = 73/158 (46%), Positives = 102/158 (64%)

Query:     8 GFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFF 67
             GFRFHPTDEE++T++L +K+  L F A  I +V D+ K EPWELP ++ + +++  WYFF
Sbjct:    20 GFRFHPTDEELITHYLHKKVLDLGFSAKAIGEV-DLNKAEPWELPYKAKIGEKE--WYFF 76

Query:    68 NAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKK-IGLKKNLVFHEGRVPNGIRTK 126
                  KY    R NR T +G+WK+T KD+EI+  RGK  +G+KK LVF+ GR P G +T 
Sbjct:    77 CVRDRKYPTGLRTNRATQAGYWKATGKDKEIF--RGKSLVGMKKTLVFYRGRAPKGQKTN 134

Query:   127 WVMHEYH---SLNASSYP-----EFVLFRL-KKKSGAK 155
             WVMHEY     L+A + P     E+V+ R+  K +G K
Sbjct:   135 WVMHEYRLDGKLSAHNLPKTAKNEWVICRVFHKTAGGK 172

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2061082 NAC038 "NAC domain containing protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 100/291 (34%), Positives = 151/291 (51%)

Query:     8 GFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFF 67
             GFRFHPTDEE+++Y+L  K+   +F    IADV D+ K EPWELP+++ M  ++  WYFF
Sbjct:    19 GFRFHPTDEELISYYLVNKIADQNFTGKAIADV-DLNKSEPWELPEKAKMGGKE--WYFF 75

Query:    68 NAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKK-IGLKKNLVFHEGRVPNGIRTK 126
             +    KY    R NR TN+G+WK+T KD+EI++    + +G+KK LVF+ GR P G +T 
Sbjct:    76 SLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSTTSELVGMKKTLVFYRGRAPRGEKTC 135

Query:   127 WVMHEYHSLNASSY-----PEFVLFRLKKKSGA-KPDARNEPTPQDLAFDSGNRA----I 176
             WVMHEY   + SSY      E+V+ R+ KK+ A K       +      ++  RA     
Sbjct:   136 WVMHEYRLHSKSSYRTSKQDEWVVCRVFKKTEATKKYISTSSSSTSHHHNNHTRASILST 195

Query:   177 ENTNPQINRGLPEEWQLFLSDTELDYNLLADSNGFHDNTFSELPPNIQPERGTSINSSVF 236
              N NP  +  L +          L+ N    +N  H    +EL    +    T+++SS  
Sbjct:   196 NNNNPNYSSDLLQLPPHLQPHPSLNINQSLMANAVH---LAELSRVFRASTSTTMDSS-H 251

Query:   237 DRILQPMVQPERGTSINSSVFDRILQP--MVQPEHGTSYSDGFNNEPSFLN 285
              +++     P  G ++N      ++QP  +V  E   + S  +N E  F N
Sbjct:   252 QQLMNYTHMPVSGLNLNLG--GALVQPPPVVSLEDVAAVSASYNGENGFGN 300

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2020123 NAC020 "NAC domain containing protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 71/157 (45%), Positives = 102/157 (64%)

Query:     8 GFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFF 67
             GFRFHPTDEE+V Y+L+RK+ G       I +V D+ K EPW+LP++S +P  D  WYF+
Sbjct:     9 GFRFHPTDEELVAYYLDRKVNGQAIELEIIPEV-DLYKCEPWDLPEKSFLPGNDMEWYFY 67

Query:    68 NAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKW 127
             +    KY N  R NR T +G+WK+T KDR + + +  K+G+KK LV++ GR P+G+RT W
Sbjct:    68 STRDKKYPNGSRTNRATRAGYWKATGKDRTV-ESKKMKMGMKKTLVYYRGRAPHGLRTNW 126

Query:   128 VMHEY---HSLNASSYPEFVLFRLKKKSGAKPDARNE 161
             VMHEY   H+ ++S    + L R+ KK+   P  + E
Sbjct:   127 VMHEYRLTHAPSSSLKESYALCRVFKKNIQIPKRKGE 163

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018103001 SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (559 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	450
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	2e-61

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  195 bits (497), Expect = 2e-61
 Identities = 63/127 (49%), Positives = 83/127 (65%), Gaps = 1/127 (0%)

Query: 7   VGFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYF 66
            GFRFHPTDEE+V Y+L+RK+ G   P   +   VD+ K+EPW+LP        DR WYF
Sbjct: 3   PGFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWDLP-DGKAKGGDREWYF 61

Query: 67  FNAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTK 126
           F+    KY N  R NR T SG+WK+T KD+ +  + G+ +G+KK LVF++GR P G +T 
Sbjct: 62  FSPRDRKYPNGSRTNRATGSGYWKATGKDKPVLSKGGEVVGMKKTLVFYKGRAPKGEKTD 121

Query: 127 WVMHEYH 133
           WVMHEY 
Sbjct: 122 WVMHEYR 128

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	450
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=1.4e-42  Score=304.75  Aligned_cols=128  Identities=48%  Similarity=0.863  Sum_probs=97.0

Q ss_pred             CCCceeECCChHHHHHHHHHHHHCCCCCCC-CceeccCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCCCCCCCcccc
Q 013077            5 GVVGFRFHPTDEEIVTYFLERKMCGLDFPA-HTIADVVDVCKYEPWELPQRSSMPKEDRVWYFFNAPVPKYANSKRINRT   83 (450)
Q Consensus         5 LPpGfRF~PTDEELV~~YL~~Ki~G~plp~-~vI~e~vDVY~~ePWdLP~~~~~g~~e~eWYFFs~r~rKy~nG~R~nRa   83 (450)
                      |||||||+|||+|||.+||++|+.|.+++. .+|.+ +|||+++||+||+....  .+.+||||+++++++++|.|++|+
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~-~Diy~~~P~~L~~~~~~--~~~~~yFF~~~~~~~~~~~r~~R~   77 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHD-VDIYSAHPWELPAKFKG--GDEEWYFFSPRKKKYPNGGRPNRV   77 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE---GGGS-GGGCHHHSSS---SSEEEEEEE----------S-EE
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceee-cccCccChHHhhhhccC--CCceEEEEEecccccCCccccccc
Confidence            899999999999999999999999999887 78999 99999999999953322  377999999999999999999999


Q ss_pred             CCCcEEEeeccCeeEEcCCCceEEEEEEEEeeeCcCCCCCccCeEEEEEEeC
Q 013077           84 TNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKWVMHEYHSL  135 (450)
Q Consensus        84 tggGyWKatG~~K~I~~~~g~vVG~KKtLvFY~Gr~p~G~KT~WVMHEYrL~  135 (450)
                      +++|+||++|+.++|.+.++.+||+||+|+||.++.+++.+|+|+||||+|.
T Consensus        78 ~~~G~Wk~~g~~~~i~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   78 TGGGYWKSTGKEKPIKDPGGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             ETTEEEEEECEEEEEEE-TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             ccceEEeecccccccccccceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            9999999999999999976679999999999999888999999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	450
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		3e-28
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		4e-28
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		4e-28

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 58/126 (46%), Positives = 82/126 (65%), Gaps = 4/126 (3%)
Query: 8   GFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFF 67
           GFRFHPTD+E+V ++L RK  G   P   IA+V D+ K++PW+LP+R+      R WYFF
Sbjct: 18  GFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEV-DLYKFDPWDLPERALF--GAREWYFF 74
Query: 68  NAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKW 127
                KY N  R NR   +G+WK+T  D+ +   RG+ +G+KK LVF+ G+ P G++T W
Sbjct: 75  TPRDRKYPNGSRPNRAAGNGYWKATGADKPV-APRGRTLGIKKALVFYAGKAPRGVKTDW 133
Query: 128 VMHEYH 133
           +MHEY 
Sbjct: 134 IMHEYR 139

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score =  122 bits (306), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 94/150 (62%), Gaps = 10/150 (6%)
Query: 8   GFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFF 67
           GFRF+PTDEE++  +L RK  G DF    IA++ D+ K++PW LP ++   +++  WYFF
Sbjct: 23  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKALFGEKE--WYFF 79
Query: 68  NAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKW 127
           +    KY N  R NR   SG+WK+T  D+ I  E G+++G+KK LVF+ G+ P G +T W
Sbjct: 80  SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTE-GQRVGIKKALVFYIGKAPKGTKTNW 138
Query: 128 VMHEYHSL------NASSYPEFVLFRLKKK 151
           +MHEY  +       ++   ++VL R+ KK
Sbjct: 139 IMHEYRLIEPSRRNGSTKLDDWVLCRIYKK 168

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score =  122 bits (306), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 94/150 (62%), Gaps = 10/150 (6%)
Query: 8   GFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFF 67
           GFRF+PTDEE++  +L RK  G DF    IA++ D+ K++PW LP ++   +++  WYFF
Sbjct: 20  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKALFGEKE--WYFF 76
Query: 68  NAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKW 127
           +    KY N  R NR   SG+WK+T  D+ I  E G+++G+KK LVF+ G+ P G +T W
Sbjct: 77  SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTE-GQRVGIKKALVFYIGKAPKGTKTNW 135
Query: 128 VMHEYHSL------NASSYPEFVLFRLKKK 151
           +MHEY  +       ++   ++VL R+ KK
Sbjct: 136 IMHEYRLIEPSRRNGSTKLDDWVLCRIYKK 165

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	450
1ut7_A	171	No apical meristem protein; transcription regulati	2e-67
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	3e-66
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  212 bits (541), Expect = 2e-67
 Identities = 62/156 (39%), Positives = 92/156 (58%), Gaps = 10/156 (6%)

Query: 7   VGFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYF 66
            GFRF+PTDEE++  +L RK  G DF    IA++ D+ K++PW LP ++     ++ WYF
Sbjct: 19  PGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKALF--GEKEWYF 75

Query: 67  FNAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTK 126
           F+    KY N  R NR   SG+WK+T  D+ I    G+++G+KK LVF+ G+ P G +T 
Sbjct: 76  FSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIST-EGQRVGIKKALVFYIGKAPKGTKTN 134

Query: 127 WVMHEYHSLNASSYP------EFVLFRLKKKSGAKP 156
           W+MHEY  +  S         ++VL R+ KK  +  
Sbjct: 135 WIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQ 170

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  209 bits (533), Expect = 3e-66
 Identities = 64/161 (39%), Positives = 91/161 (56%), Gaps = 15/161 (9%)

Query: 7   VGFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYF 66
            GFRFHPTD+E+V ++L RK  G   P   IA+V D+ K++PW+LP+R+      R WYF
Sbjct: 17  PGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEV-DLYKFDPWDLPERALF--GAREWYF 73

Query: 67  FNAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTK 126
           F     KY N  R NR   +G+WK+T  D+ +   RG+ +G+KK LVF+ G+ P G++T 
Sbjct: 74  FTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAP-RGRTLGIKKALVFYAGKAPRGVKTD 132

Query: 127 WVMHEYHSLNASSYP-----------EFVLFRLKKKSGAKP 156
           W+MHEY   +A               ++VL RL  K     
Sbjct: 133 WIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNEWE 173

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 6e-06
 Identities = 71/522 (13%), Positives = 143/522 (27%), Gaps = 149/522 (28%)

Query: 16  EEIVTYFLERKMCGLDFP--AHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFFNAPVPK 73
           EE+V  F+E  +  +++      I       + +P  +  R  + + DR++   N    K
Sbjct: 76  EEMVQKFVEEVL-RINYKFLMSPIKTE---QR-QP-SMMTRMYIEQRDRLYND-NQVFAK 128

Query: 74  YANSKRINRTTN-------------------SGFWKS-----TCKDREIWDERGKKIGLK 109
           Y N  R+                         G  K+      C   ++           
Sbjct: 129 Y-NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV----------- 176

Query: 110 KNLVFHEGRVPNGIRTKWVMHEYHSLNASSYPEFVL-------FRLKKKSGAKPD-ARNE 161
                 + ++   I   W+     +L   + PE VL       +++     ++ D + N 
Sbjct: 177 ------QCKMDFKIF--WL-----NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 162 PTPQDLAFDSGNRAIENTNPQINRGL--------PEEWQLFLSD-------TELDYNLLA 206
                       R +++        L         + W  F  +       T     +  
Sbjct: 224 KLRIHSIQAELRRLLKS--KPYENCLLVLLNVQNAKAWNAF--NLSCKILLTTRFKQVTD 279

Query: 207 DSNGFHDNTFS--ELPPNIQPERGTSINSSVFDRILQPMVQPERGTSINS---SVFDRIL 261
             +       S       + P+   S+     D   Q +  P    + N    S+    +
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL--PREVLTTNPRRLSIIAESI 337

Query: 262 QPMVQPEHGTSYSDGFNNEPSFLNDSC---LETSEQEEAF---------VN-------SL 302
           +         ++     ++ + + +S    LE +E  + F          +        +
Sbjct: 338 RDG--LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395

Query: 303 WADQGECFGERSMNTL-------RHDFNPTISLRGG---------------RSIGQSSDA 340
           W D  +      +N L       +     TIS+                  RSI    + 
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455

Query: 341 DSKIYQQHGKVPGTSNVFYEKT--HAQMETVWALSETSSSSEGYGIMDFDV--SSVNSDT 396
                      P     FY     H  ++ +      +     +  +DF      +  D+
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHH--LKNIEHPERMTLFRMVF--LDFRFLEQKIRHDS 511

Query: 397 DLPGIVGHESVVDELQHTPKYHKYFEARCSTQELKTQRKVSD 438
                 G  S+++ LQ    Y  Y        E    R V+ 
Sbjct: 512 TAWNASG--SILNTLQQLKFYKPYICDNDPKYE----RLVNA 547

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 49/339 (14%), Positives = 99/339 (29%), Gaps = 112/339 (33%)

Query: 4   HGVVGFRFHPTDEEIVTYF----------LERKMCGLDFPAH--TIADVV--DVCKYEPW 49
           H  +      T +E+ +            L R++   + P     IA+ +   +  ++ W
Sbjct: 293 HHSMTL----TPDEVKSLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLATWDNW 347

Query: 50  ELPQRSSM------------PKEDRVWYF----F--NAPVPKYANSKRINRTTNSGFW-- 89
           +      +            P E R  +     F  +A +P    +  ++       W  
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP----TILLSL-----IWFD 398

Query: 90  KSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKWVMHEYHSLNASSYPEFVLFRLK 149
                   + ++  K   ++K     E  +              S+            LK
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQ--PKESTI-----------SIPSI---------YLELK 436

Query: 150 KKSGAKP-------DARNEPTPQDLAFDSGNRAIENTNPQI---------NRGLPEEWQL 193
            K   +        D  N P      FDS +      +            N   PE   L
Sbjct: 437 VKLENEYALHRSIVDHYNIP----KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492

Query: 194 FLSDTELDYNLLA----------DSNGFHDNTFSELP---PNIQPERGTSINSSVFDRIL 240
           F     LD+  L           +++G   NT  +L    P I        N   ++R++
Sbjct: 493 F-RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD------NDPKYERLV 545

Query: 241 QPMVQ--PERGTSINSSVFDRILQPMVQPEHGTSYSDGF 277
             ++   P+   ++  S +  +L+  +  E    + +  
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	450
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=1.8e-54  Score=400.98  Aligned_cols=146  Identities=43%  Similarity=0.871  Sum_probs=131.7

Q ss_pred             CCCCceeECCChHHHHHHHHHHHHCCCCCCCCceeccCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCCCCCCCcccc
Q 013077            4 HGVVGFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFFNAPVPKYANSKRINRT   83 (450)
Q Consensus         4 ~LPpGfRF~PTDEELV~~YL~~Ki~G~plp~~vI~e~vDVY~~ePWdLP~~~~~g~~e~eWYFFs~r~rKy~nG~R~nRa   83 (450)
                      .|||||||+|||||||.|||++|+.|.+++.++|.+ +|||+++||+||+.+..+  +.+|||||++++||++|.|+||+
T Consensus        14 ~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~e-vDvy~~~Pw~Lp~~~~~g--~~ewYFFs~r~~ky~~g~R~nR~   90 (174)
T 3ulx_A           14 NLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAE-VDLYKFDPWDLPERALFG--AREWYFFTPRDRKYPNGSRPNRA   90 (174)
T ss_dssp             TCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEE-CCGGGSCGGGSGGGCSSC--SSEEEEEEECCC-----CCSCEE
T ss_pred             CCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeee-cccccCCchhhhhhhccC--CceEEEEeccccccCCCCCceee
Confidence            799999999999999999999999999999999999 999999999999988766  78999999999999999999999


Q ss_pred             CCCcEEEeeccCeeEEcCCCceEEEEEEEEeeeCcCCCCCccCeEEEEEEeCCCCCC-----------CceEEEEEEecC
Q 013077           84 TNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKWVMHEYHSLNASSY-----------PEFVLFRLKKKS  152 (450)
Q Consensus        84 tggGyWKatG~~K~I~~~~g~vVG~KKtLvFY~Gr~p~G~KT~WVMHEYrL~~~~~~-----------~e~VLCRIykK~  152 (450)
                      |++||||+||++|+|... |.+||+||+|+||.|++|+|.||+|+||||+|......           .+|||||||+|+
T Consensus        91 t~~G~WkatG~dk~I~~~-g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K~  169 (174)
T 3ulx_A           91 AGNGYWKATGADKPVAPR-GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK  169 (174)
T ss_dssp             ETTEEEEECSCCEEECCS-SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEESC
T ss_pred             cCCceEccCCCCcEEeeC-CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEcC
Confidence            999999999999999874 56999999999999999999999999999999987431           289999999986


Q ss_pred             C
Q 013077          153 G  153 (450)
Q Consensus       153 ~  153 (450)
                      +
T Consensus       170 ~  170 (174)
T 3ulx_A          170 N  170 (174)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=6.3e-54  Score=396.25  Aligned_cols=148  Identities=43%  Similarity=0.839  Sum_probs=129.8

Q ss_pred             CCCCCceeECCChHHHHHHHHHHHHCCCCCCCCceeccCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCCCCCCCccc
Q 013077            3 GHGVVGFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFFNAPVPKYANSKRINR   82 (450)
Q Consensus         3 ~~LPpGfRF~PTDEELV~~YL~~Ki~G~plp~~vI~e~vDVY~~ePWdLP~~~~~g~~e~eWYFFs~r~rKy~nG~R~nR   82 (450)
                      ..|||||||+|||||||.|||++|+.|.+++.++|++ +|||+++||+||+.+..+  +.+|||||++++||++|.|+||
T Consensus        15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e-~Diy~~~Pw~Lp~~~~~g--~~ewyFFs~r~~k~~~g~R~~R   91 (171)
T 1ut7_A           15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAE-IDLYKFDPWVLPNKALFG--EKEWYFFSPRDRKYPNGSRPNR   91 (171)
T ss_dssp             SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEE-CCGGGSCGGGHHHHSSSC--SSEEEEEEECCC-------CCE
T ss_pred             cCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEee-cccccCChhHhhchhhcC--CccEEEEeccccccCCCCcccc
Confidence            4799999999999999999999999999999999999 999999999999988765  8999999999999999999999


Q ss_pred             cCCCcEEEeeccCeeEEcCCCceEEEEEEEEeeeCcCCCCCccCeEEEEEEeCCCCC------CCceEEEEEEecCCC
Q 013077           83 TTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKWVMHEYHSLNASS------YPEFVLFRLKKKSGA  154 (450)
Q Consensus        83 atggGyWKatG~~K~I~~~~g~vVG~KKtLvFY~Gr~p~G~KT~WVMHEYrL~~~~~------~~e~VLCRIykK~~~  154 (450)
                      +|++||||+||++|+|... +.+||+||+|+||+|++|+|.||+|+||||+|.....      ..+|||||||+|+..
T Consensus        92 ~t~~G~Wk~tG~~k~I~~~-~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~  168 (171)
T 1ut7_A           92 VAGSGYWKATGTDKIISTE-GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS  168 (171)
T ss_dssp             EETTEEEEEEEEEEEEEET-TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred             cCCCCEEeccCCCceEEec-CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence            9999999999999999974 4699999999999999999999999999999998752      139999999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	450
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	1e-45

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  154 bits (390), Expect = 1e-45
 Identities = 62/151 (41%), Positives = 92/151 (60%), Gaps = 10/151 (6%)

Query: 7   VGFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYF 66
            GFRF+PTDEE++  +L RK  G DF    IA+ +D+ K++PW LP ++   +++  WYF
Sbjct: 19  PGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAE-IDLYKFDPWVLPNKALFGEKE--WYF 75

Query: 67  FNAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTK 126
           F+    KY N  R NR   SG+WK+T  D+ I    G+++G+KK LVF+ G+ P G +T 
Sbjct: 76  FSPRDRKYPNGSRPNRVAGSGYWKATGTDKII-STEGQRVGIKKALVFYIGKAPKGTKTN 134

Query: 127 WVMHEYHSLNASSYP------EFVLFRLKKK 151
           W+MHEY  +  S         ++VL R+ KK
Sbjct: 135 WIMHEYRLIEPSRRNGSTKLDDWVLCRIYKK 165

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	450
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.2e-50  Score=368.83  Aligned_cols=145  Identities=43%  Similarity=0.851  Sum_probs=127.4

Q ss_pred             CCCCceeECCChHHHHHHHHHHHHCCCCCCCCceeccCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCCCCCCCcccc
Q 013077            4 HGVVGFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFFNAPVPKYANSKRINRT   83 (450)
Q Consensus         4 ~LPpGfRF~PTDEELV~~YL~~Ki~G~plp~~vI~e~vDVY~~ePWdLP~~~~~g~~e~eWYFFs~r~rKy~nG~R~nRa   83 (450)
                      +|||||||+|||||||.|||++|+.|.|++.++|++ +|||+++||+||+....+  +.+||||+++.+++++|.|.+|+
T Consensus        16 ~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~-~Dvy~~~Pw~Lp~~~~~~--~~~wyFft~~~~k~~~g~r~~R~   92 (166)
T d1ut7a_          16 SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAE-IDLYKFDPWVLPNKALFG--EKEWYFFSPRDRKYPNGSRPNRV   92 (166)
T ss_dssp             CCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEE-CCGGGSCGGGHHHHSSSC--SSEEEEEEECCC-------CCEE
T ss_pred             cCCCccccCCCcHHHHHHHHHHHHcCCCCCccccee-ccCCcCChhhccchhccC--cceEEEEeeeccccCCCCccccc
Confidence            799999999999999999999999999999999999 999999999999877654  78999999999999999999999


Q ss_pred             CCCcEEEeeccCeeEEcCCCceEEEEEEEEeeeCcCCCCCccCeEEEEEEeCCCCCC------CceEEEEEEecC
Q 013077           84 TNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKWVMHEYHSLNASSY------PEFVLFRLKKKS  152 (450)
Q Consensus        84 tggGyWKatG~~K~I~~~~g~vVG~KKtLvFY~Gr~p~G~KT~WVMHEYrL~~~~~~------~e~VLCRIykK~  152 (450)
                      +++|+||++|+++.|.+ +|.+||+||+|+||.++++++.+|+|+||||+|......      .+|||||||+|+
T Consensus        93 ~g~G~Wk~~g~~~~i~~-~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~~~~~~~~~VLCrI~~Kk  166 (166)
T d1ut7a_          93 AGSGYWKATGTDKIIST-EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ  166 (166)
T ss_dssp             ETTEEEEEEEEEEEEEE-TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC
T ss_pred             cCCCEecccCCCceEec-CCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCcccccCccccCCEEEEEEEecC
Confidence            99999999999999987 456999999999999999999999999999999887542      289999999984