Citrus Sinensis ID: 013085

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
MTDPSDEAKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKTDEAKEKIVSLFLEIVCSFCGMIYF
cccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHccccccc
ccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcHcHcccccHHHHHHHHHHHHHcHcccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHcccEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHcc
MTDPSDEAKQIEKLYEFGERLNeakdksqnvkDYEGIIEAAKTSLKAKQLAAQLIPRFFkffpdlssrAVDAHLDLIEEEELGVRVQAirglplfckdtpeYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHigsvdepstdeFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLslfgekapTERMKELIGIIEgqadldaqfnvsdadhIDRLISCLYMALpfflrgasgskFLNYLNKHiipvfdklpEERKLDLLKALAeispyttpqdsrqiLPSVAVLLKKYmplrktggeemnFTYVECLLYTFHhlahkapnatnslcgykivtgqpsdrlgedfsDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKTDEAKEKIVSLFLEIVCSFCGMIYF
mtdpsdeakQIEKLYEFGErlneakdksqnvkDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKhigsvdepstdeFIREKVLSFIRDKvfplkaellkpqeeMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEispyttpqdsrqilPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKTDEAKEKIVSLFLEIVCSFCGMIYF
MTDPSDEAKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKTDEAKEKIVSLFLEIVCSFCGMIYF
*********************************YEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKP***MERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRAT************************EKIVSLFLEIVCSFCGMIY*
************KLYEFGER*************Y*GIIE******KAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVF*************ERHITDLIKKSLEDVTGAEFRMFMDFLKSLSL*******ERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRAT***************************VSLFLEIVCSFCGMIYF
********KQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKTDEAKEKIVSLFLEIVCSFCGMIYF
*****DEAKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKTDEAKEKIVSLFLEIVCSFCGMIYF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MTDPSDEAKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATxxxxxxxxxxxxxxxxxxxxxEAKEKIVSLFLEIVCSFCGMIYF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query449 2.2.26 [Sep-21-2011]
Q5ZMW3523 Apoptosis inhibitor 5 OS= yes no 0.873 0.749 0.355 4e-55
Q5R644504 Apoptosis inhibitor 5 OS= yes no 0.873 0.777 0.350 3e-53
Q9BZZ5524 Apoptosis inhibitor 5 OS= yes no 0.873 0.748 0.350 3e-53
O35841504 Apoptosis inhibitor 5 OS= yes no 0.873 0.777 0.348 1e-52
Q6DDM4524 Apoptosis inhibitor 5-A O N/A no 0.870 0.746 0.336 1e-50
Q7ZY79523 Apoptosis inhibitor 5-B O N/A no 0.879 0.755 0.330 3e-49
Q9V431 536 Apoptosis inhibitor 5 hom yes no 0.886 0.742 0.312 7e-46
Q54CL0 606 Apoptosis inhibitor 5 hom yes no 0.915 0.678 0.260 4e-32
>sp|Q5ZMW3|API5_CHICK Apoptosis inhibitor 5 OS=Gallus gallus GN=API5 PE=2 SV=1 Back     alignment and function desciption
 Score =  216 bits (549), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 158/445 (35%), Positives = 236/445 (53%), Gaps = 53/445 (11%)

Query: 11  IEKLYEFGERLNEAKDKSQNVKD-YEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRA 69
           +E+LY     L +A + +   KD Y+ I++  K   K K+LAAQ IP+FFK FP+L+  A
Sbjct: 4   VEELYRNYGILADATETAGQHKDAYQVILDGVKGGAKEKRLAAQFIPKFFKHFPELADSA 63

Query: 70  VDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKAL 129
           ++A LDL E+E++ +R QAI+ LP F   T + L ++ DIL QLL +++  E + V+ AL
Sbjct: 64  INAQLDLCEDEDVSIRRQAIKELPQFA--TGDNLPRVADILTQLLQSDDSAEFNLVNNAL 121

Query: 130 MSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERH 189
           +S+ + D K +L  LF  I        ++ +RE+ + F+  K+  L  E+L   +E+E  
Sbjct: 122 LSIFKMDAKGTLGGLFSQI-----LQGEDIVRERAIKFLSTKLKTLPEEVLT--KEVEEF 174

Query: 190 ITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSD 249
           I    KK LEDVTG EF +FM  L  L      +  +++ EL+     QADL+  FN SD
Sbjct: 175 ILAESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVA---EQADLEQTFNPSD 231

Query: 250 ADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKL--PEER---KLDLLKALA 304
            D +DRL+ C   A+P F +    +KF+ Y  +H++P    L  P E    +L++LK LA
Sbjct: 232 PDCVDRLLQCTRQAVPLFSKNVHSTKFVTYFCEHVLPNLSALTTPVEGLDIQLEVLKLLA 291

Query: 305 EISPYTTPQDSRQILPSVAVLLKK---YMPL--------RKTGGEE--MNFTYVECLLYT 351
           E+S +    D  ++  ++  L  K   YMPL           GGEE  + F+YVECLLY+
Sbjct: 292 EMSSFCG--DMEKLESNLKKLFDKLLEYMPLPPEEAENGENAGGEEPKLQFSYVECLLYS 349

Query: 352 FHHLAHKAPN-ATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLT 410
           FH L  K P+  T  L   K+                 KDF  RL       +  +++L 
Sbjct: 350 FHQLGRKLPDFLTAKLNAEKL-----------------KDFKIRLQYFARGLQVYIRQLR 392

Query: 411 QGLADHNKEMAAAKTDEAKEKIVSL 435
             LA   K   A KT+E K K+V+L
Sbjct: 393 --LALQGKTGEALKTEENKIKVVAL 415
Antiapoptotic factor that may have a role in protein assembly.
Gallus gallus (taxid: 9031)
>sp|Q5R644|API5_PONAB Apoptosis inhibitor 5 OS=Pongo abelii GN=API5 PE=2 SV=1 Back     alignment and function description
>sp|Q9BZZ5|API5_HUMAN Apoptosis inhibitor 5 OS=Homo sapiens GN=API5 PE=1 SV=3 Back     alignment and function description
>sp|O35841|API5_MOUSE Apoptosis inhibitor 5 OS=Mus musculus GN=Api5 PE=2 SV=2 Back     alignment and function description
>sp|Q6DDM4|API5A_XENLA Apoptosis inhibitor 5-A OS=Xenopus laevis GN=api5-a PE=2 SV=1 Back     alignment and function description
>sp|Q7ZY79|API5B_XENLA Apoptosis inhibitor 5-B OS=Xenopus laevis GN=api5-b PE=2 SV=1 Back     alignment and function description
>sp|Q9V431|API5_DROME Apoptosis inhibitor 5 homolog OS=Drosophila melanogaster GN=Aac11 PE=1 SV=1 Back     alignment and function description
>sp|Q54CL0|API5_DICDI Apoptosis inhibitor 5 homolog OS=Dictyostelium discoideum GN=api5 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query449
449433776 554 PREDICTED: apoptosis inhibitor 5-like [C 0.959 0.777 0.861 0.0
449519826 557 PREDICTED: apoptosis inhibitor 5-like [C 0.959 0.773 0.852 0.0
359483518 550 PREDICTED: apoptosis inhibitor 5-like [V 0.959 0.783 0.861 0.0
224079137539 predicted protein [Populus trichocarpa] 0.946 0.788 0.856 0.0
224116312543 predicted protein [Populus trichocarpa] 0.951 0.786 0.857 0.0
356521430 550 PREDICTED: apoptosis inhibitor 5-like [G 0.946 0.772 0.833 0.0
356548640 551 PREDICTED: apoptosis inhibitor 5-like [G 0.946 0.771 0.831 0.0
255563042 554 Apoptosis inhibitor, putative [Ricinus c 0.957 0.776 0.828 0.0
225461593 564 PREDICTED: apoptosis inhibitor 5 [Vitis 0.955 0.760 0.820 0.0
30685906442 Apoptosis inhibitory protein 5 (API5) [A 0.971 0.986 0.770 0.0
>gi|449433776|ref|XP_004134673.1| PREDICTED: apoptosis inhibitor 5-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/432 (86%), Positives = 404/432 (93%), Gaps = 1/432 (0%)

Query: 1   MTDPSDEAKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFK 60
           MT+ S++A+ IEKLYEFGERLNEA+DKSQNVKDY+GII+AAKTS KAKQLAAQLIPRFFK
Sbjct: 1   MTELSEDAQHIEKLYEFGERLNEAEDKSQNVKDYQGIIDAAKTSTKAKQLAAQLIPRFFK 60

Query: 61  FFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIV 120
           FFP LS  A+DAH+DLIEEEEL +RVQAIRGLPLFCKDTPE + KIVDILVQ+LA+EE V
Sbjct: 61  FFPSLSGPAIDAHIDLIEEEELAIRVQAIRGLPLFCKDTPENIGKIVDILVQILASEEFV 120

Query: 121 ERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELL 180
           ERDAVHKALM+LLRQDVKASL+ALFKHIGSVDEP+TDE IREKVLSFIR+KVFP+K+E+L
Sbjct: 121 ERDAVHKALMALLRQDVKASLSALFKHIGSVDEPTTDEVIREKVLSFIREKVFPIKSEIL 180

Query: 181 KPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQAD 240
           KPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLS+FGEKAP ER+KELIGIIEGQAD
Sbjct: 181 KPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSIFGEKAPPERLKELIGIIEGQAD 240

Query: 241 LDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLL 300
           LDAQFNVSDADHIDRLISCL+MA+PF +RGAS  KFL+YLNKH+IPVF+KLPEERKLDLL
Sbjct: 241 LDAQFNVSDADHIDRLISCLFMAIPFVVRGASSCKFLSYLNKHVIPVFEKLPEERKLDLL 300

Query: 301 KALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAP 360
           KALAE SPYTTPQDSRQ LPSV  LLKKYMP RKT GEEMNFTYVECLLYTFHHLAHK P
Sbjct: 301 KALAEFSPYTTPQDSRQFLPSVVQLLKKYMPGRKT-GEEMNFTYVECLLYTFHHLAHKVP 359

Query: 361 NATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEM 420
           NATNSLCGYKIVTGQPSDRLGEDFSD YKDFTERLT VEDLTRAT+KKLTQG+ +HNK M
Sbjct: 360 NATNSLCGYKIVTGQPSDRLGEDFSDNYKDFTERLTNVEDLTRATIKKLTQGMDEHNKAM 419

Query: 421 AAAKTDEAKEKI 432
           AAAK+DEAK  I
Sbjct: 420 AAAKSDEAKSNI 431

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449519826|ref|XP_004166935.1| PREDICTED: apoptosis inhibitor 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359483518|ref|XP_002272702.2| PREDICTED: apoptosis inhibitor 5-like [Vitis vinifera] gi|297740462|emb|CBI30644.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224079137|ref|XP_002305763.1| predicted protein [Populus trichocarpa] gi|222848727|gb|EEE86274.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224116312|ref|XP_002331951.1| predicted protein [Populus trichocarpa] gi|222874728|gb|EEF11859.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356521430|ref|XP_003529359.1| PREDICTED: apoptosis inhibitor 5-like [Glycine max] Back     alignment and taxonomy information
>gi|356548640|ref|XP_003542708.1| PREDICTED: apoptosis inhibitor 5-like [Glycine max] Back     alignment and taxonomy information
>gi|255563042|ref|XP_002522525.1| Apoptosis inhibitor, putative [Ricinus communis] gi|223538216|gb|EEF39825.1| Apoptosis inhibitor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225461593|ref|XP_002282903.1| PREDICTED: apoptosis inhibitor 5 [Vitis vinifera] gi|302142932|emb|CBI20227.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|30685906|ref|NP_850224.1| Apoptosis inhibitory protein 5 (API5) [Arabidopsis thaliana] gi|330253816|gb|AEC08910.1| Apoptosis inhibitory protein 5 (API5) [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query449
TAIR|locus:2055481 553 AT2G34040 [Arabidopsis thalian 0.946 0.768 0.789 2.5e-177
TAIR|locus:2029994 556 AT1G29030 "AT1G29030" [Arabido 0.939 0.758 0.771 2.6e-173
UNIPROTKB|Q5ZMW3523 API5 "Apoptosis inhibitor 5" [ 0.879 0.755 0.352 8.9e-54
UNIPROTKB|E2RHB3524 API5 "Uncharacterized protein" 0.879 0.753 0.348 5.6e-52
UNIPROTKB|F1SHH7524 API5 "Uncharacterized protein" 0.879 0.753 0.348 5.6e-52
UNIPROTKB|G3V1C3510 API5 "Apoptosis inhibitor 5" [ 0.879 0.774 0.348 9.2e-52
UNIPROTKB|Q9BZZ5524 API5 "Apoptosis inhibitor 5" [ 0.879 0.753 0.348 9.2e-52
UNIPROTKB|Q5R644504 API5 "Apoptosis inhibitor 5" [ 0.879 0.783 0.348 9.2e-52
MGI|MGI:1888993504 Api5 "apoptosis inhibitor 5" [ 0.879 0.783 0.346 2.4e-51
RGD|1309772504 Api5 "apoptosis inhibitor 5" [ 0.879 0.783 0.346 2.4e-51
TAIR|locus:2055481 AT2G34040 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1722 (611.2 bits), Expect = 2.5e-177, P = 2.5e-177
 Identities = 338/428 (78%), Positives = 375/428 (87%)

Query:     5 SDEAKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPD 64
             S+E +QIEKLYEF ERLN +KDKSQNV+DYEGII+ +KTS+KAKQLA+QLIPR+FKFFP 
Sbjct:     6 SEEVQQIEKLYEFSERLNASKDKSQNVEDYEGIIKMSKTSMKAKQLASQLIPRYFKFFPS 65

Query:    65 LSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDA 124
             LS+ A DAH+D I++ +LGVRVQAIRGLPLFCKDTP+ LSKIVD+LVQLL  EE VERDA
Sbjct:    66 LSTEAFDAHMDCIDDGDLGVRVQAIRGLPLFCKDTPDILSKIVDVLVQLLNTEEPVERDA 125

Query:   125 VHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQE 184
             VHKALMSLLRQD KAS TALF H G    P+TD+ IREKVL+FIRDKV PLK ELLKPQE
Sbjct:   126 VHKALMSLLRQDPKASSTALFTHAGVT--PTTDDQIREKVLNFIRDKVIPLKGELLKPQE 183

Query:   185 EMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQ 244
             EMERHITDLIK+SLEDVTG EF+MFMDFL SLS+FG KAP ERM+EL+ IIEGQADL+AQ
Sbjct:   184 EMERHITDLIKQSLEDVTGGEFKMFMDFLTSLSIFGGKAPPERMQELVEIIEGQADLNAQ 243

Query:   245 FNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALA 304
             F  SD DHIDRLISCL +ALPFF RGA  S+FL YLNKHIIPVFDKLPEERKLDLLKALA
Sbjct:   244 FEFSDTDHIDRLISCLQLALPFFARGAPSSRFLIYLNKHIIPVFDKLPEERKLDLLKALA 303

Query:   305 EISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATN 364
             +ISPYTT Q++RQ+LPS+  LLK YMP RKTG EEMNFTYVECLLY FHHLAHK PNATN
Sbjct:   304 DISPYTTAQEARQLLPSIVELLKIYMPARKTG-EEMNFTYVECLLYAFHHLAHKVPNATN 362

Query:   365 SLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEMAAAK 424
             SLCGYKIVTGQPSDRLGEDFS+  KDFTERLT VEDLT+ATMKKLTQG+ +HNK M+AAK
Sbjct:   363 SLCGYKIVTGQPSDRLGEDFSELNKDFTERLTIVEDLTKATMKKLTQGMTEHNKAMSAAK 422

Query:   425 TDEAKEKI 432
             TDE K  I
Sbjct:   423 TDEEKASI 430
GO:0005634 "nucleus" evidence=ISM
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2029994 AT1G29030 "AT1G29030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZMW3 API5 "Apoptosis inhibitor 5" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RHB3 API5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SHH7 API5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|G3V1C3 API5 "Apoptosis inhibitor 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BZZ5 API5 "Apoptosis inhibitor 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R644 API5 "Apoptosis inhibitor 5" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
MGI|MGI:1888993 Api5 "apoptosis inhibitor 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1309772 Api5 "apoptosis inhibitor 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.IV.2890.1
hypothetical protein (539 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query449
pfam05918 543 pfam05918, API5, Apoptosis inhibitory protein 5 (A 0.0
>gnl|CDD|218811 pfam05918, API5, Apoptosis inhibitory protein 5 (API5) Back     alignment and domain information 
 Score =  648 bits (1672), Expect = 0.0
 Identities = 294/423 (69%), Positives = 340/423 (80%), Gaps = 3/423 (0%)

Query: 10  QIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRA 69
            IEKLYEF ERL+E+ DKSQNV DYEGII+A+KT+ K KQLA+QLIPR+FKFFP L++ A
Sbjct: 1   NIEKLYEFYERLSESGDKSQNVDDYEGIIKASKTTSKEKQLASQLIPRYFKFFPSLATEA 60

Query: 70  VDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKAL 129
            DA  DL ++++ GVRVQAIRGLPLFCKDTP+  SKI D+LVQLL  EE VERDAVHKAL
Sbjct: 61  FDAQFDLCDDDDTGVRVQAIRGLPLFCKDTPDATSKIGDVLVQLLNTEEPVERDAVHKAL 120

Query: 130 MSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERH 189
           MSL+RQD KAS+TALF+HI +    +TDE IREKVL FIRDKV PLK ELLKPQ+EMERH
Sbjct: 121 MSLIRQDTKASITALFQHISAT--LTTDEQIREKVLKFIRDKVLPLKGELLKPQKEMERH 178

Query: 190 ITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSD 249
           ITDLIKKSL+DVTG EF MFMDFL SLS+FG KAP ERM+EL+ IIEGQADL+  F   D
Sbjct: 179 ITDLIKKSLQDVTGDEFHMFMDFLGSLSIFGGKAPIERMQELVEIIEGQADLNNTFIAVD 238

Query: 250 ADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPY 309
            + ++R I C   A P+F RGA  S FL YLNK I+P FD LPEERKL LLKALAE+SPY
Sbjct: 239 DEVVERFIQCASAAAPYFSRGAPSSAFLAYLNKKILPTFDMLPEERKLRLLKALAEMSPY 298

Query: 310 TTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGY 369
           TT QD+RQ LPS+  LL +YMPL  T      F++ ECLLY  H L  K PNATNSLCGY
Sbjct: 299 TTAQDARQRLPSIVNLLLEYMPLGDT-PPSFQFSHAECLLYALHTLGKKHPNATNSLCGY 357

Query: 370 KIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKTDEAK 429
           KIVTGQPSDRLGEDFS+  KDFTERLT VEDLT+ATMKKLTQG+++H+K M+ AKTDE K
Sbjct: 358 KIVTGQPSDRLGEDFSEKNKDFTERLTYVEDLTKATMKKLTQGMSEHSKAMSTAKTDEEK 417

Query: 430 EKI 432
           E++
Sbjct: 418 EEL 420

This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterized by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in human chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors. Length = 543

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 449
PF05918 556 API5: Apoptosis inhibitory protein 5 (API5); Inter 100.0
KOG2213460 consensus Apoptosis inhibitor 5/fibroblast growth 100.0
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 97.88
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 97.68
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.39
PTZ00429 746 beta-adaptin; Provisional 97.33
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 96.74
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 96.45
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 96.43
PRK09687280 putative lyase; Provisional 96.27
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 96.03
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 95.97
PF1036392 DUF2435: Protein of unknown function (DUF2435) 95.93
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 95.83
PRK09687280 putative lyase; Provisional 95.56
KOG2213460 consensus Apoptosis inhibitor 5/fibroblast growth 95.47
PTZ00429 746 beta-adaptin; Provisional 95.44
KOG1061 734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 94.54
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 94.24
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 94.23
PF14500262 MMS19_N: Dos2-interacting transcription regulator 93.75
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 93.4
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 93.26
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 93.22
KOG2259 823 consensus Uncharacterized conserved protein [Funct 92.45
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 91.7
KOG1061 734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 91.42
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 90.63
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 90.16
PF05804708 KAP: Kinesin-associated protein (KAP) 89.82
KOG0212 675 consensus Uncharacterized conserved protein [Funct 89.18
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 88.43
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 87.55
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 87.49
PF02854209 MIF4G: MIF4G domain; InterPro: IPR003890 This entr 87.04
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 85.87
COG5096 757 Vesicle coat complex, various subunits [Intracellu 85.82
smart00543200 MIF4G Middle domain of eukaryotic initiation facto 84.55
PF05918 556 API5: Apoptosis inhibitory protein 5 (API5); Inter 84.46
cd06561197 AlkD_like A new structural DNA glycosylase. This d 84.17
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 83.36
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 83.26
PF14500262 MMS19_N: Dos2-interacting transcription regulator 82.76
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 82.68
COG5096 757 Vesicle coat complex, various subunits [Intracellu 82.49
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 81.84
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 81.38
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 80.88
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information 
Probab=100.00  E-value=4.2e-141  Score=1119.69  Aligned_cols=436  Identities=56%  Similarity=0.869  Sum_probs=337.4

Q ss_pred             HHHHHHHHhhhhhhccccccCHHhHHHHHHHccCCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHHHHHh
Q 013085           10 QIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAI   89 (449)
Q Consensus        10 ~ie~LY~~~~~L~~akd~~~~~~~y~~Il~~~kg~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~qAi   89 (449)
                      +||+||++||||++|+|+++|+++|++||+|+||+.++|+|||||||||||+||+|+++||||++|||||||++||+|||
T Consensus         1 ~ie~lY~~~~~L~~a~d~~~~~~~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~ai   80 (556)
T PF05918_consen    1 NIEKLYENYEILADAKDKSQHEEDYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAI   80 (556)
T ss_dssp             -HHHHHHHHHHHHHTGGGGGGHHHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHH
T ss_pred             CHHHHHHHHhHhhcCCCcccCHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccccccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 013085           90 RGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR  169 (449)
Q Consensus        90 k~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI~~~~~~~~ee~~Re~~l~Fl~  169 (449)
                      |+||.+||+||+||+||||||+|||||||++|+++||+||++||++|||+||++||+||.++  +++||.+|||+|+||+
T Consensus        81 k~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~--~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen   81 KGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS--KSGDEQVRERALKFLR  158 (556)
T ss_dssp             HHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-----HS-HHHHHHHHHHHH
T ss_pred             HhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--ccCchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999965  3788899999999999


Q ss_pred             hhcccchhhhcCChHHHHHHHHHHHHhhccccchHHHHHHHHHHHhccccCCCCchhHHHHHHHHHHhhhcccCCCCCCC
Q 013085          170 DKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSD  249 (449)
Q Consensus       170 ~kl~~l~~e~l~~~~E~E~~i~~~ikK~L~dVt~~EF~l~m~lL~~l~~~~~~~p~~~~qeLv~~i~eqa~Ld~~f~~sD  249 (449)
                      +||+++++++++|++|+|++|+++|||+|+|||++||++||++|++|++|+...|..|+|+||++|.+||+||++|+++|
T Consensus       159 ~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD  238 (556)
T PF05918_consen  159 EKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSD  238 (556)
T ss_dssp             HHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSS
T ss_pred             HHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcC
Confidence            99999999999999999999999999999999999999999999999999765555568999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhhhhccCCChhhHHHHHHHhhccCCCCCChhhhHHHHHHHHhhCCCCChhhHhhhhHHHHHHHHhh
Q 013085          250 ADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKY  329 (449)
Q Consensus       250 ~d~vdrli~Cl~~AlP~fS~~v~Stkfv~y~~~~VlP~l~~L~e~~kL~lLK~lAE~s~~~~~~da~~~l~~i~~~L~~y  329 (449)
                      +++|||||+|+++|+||||+|++|++||+|+|++|||+|++|+++.|+++||+|||+|||||.+|++++|++||++|++|
T Consensus       239 ~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~y  318 (556)
T PF05918_consen  239 PESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKY  318 (556)
T ss_dssp             HHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcchHHHHHHHHHHHhhhhcCCccccccccceeecCCCCCCCCcChhhhHHHHHHHHHhHHHHHHHHHHHH
Q 013085          330 MPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKL  409 (449)
Q Consensus       330 mP~~~~~~~~l~fs~VEcLLyafH~L~~k~P~~l~~lcg~k~vTgqpsd~~~ed~~~~~kdF~~RLqy~~~~~q~yikkL  409 (449)
                      ||.+.+ .+++||||||||||+||+||+|+|+++++|||||+||||||||+|+|+++++||||.|||||+|++|+|||+|
T Consensus       319 mP~~~~-~~~l~fs~vEcLL~afh~La~k~p~~~~~lCgyk~vtgQpsd~~~~~~~~~~kdf~~RL~yl~~~~q~yikkl  397 (556)
T PF05918_consen  319 MPSKKT-EPKLQFSYVECLLYAFHQLARKSPNSLNFLCGYKIVTGQPSDRYGEDDAEKLKDFRERLQYLARGTQAYIKKL  397 (556)
T ss_dssp             S-----------HHHHHHHHHHHHHHHTT-THHHH---------------------TTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCC-CCcccchHhhHHHHHHHHHhhhCcchhhhHhhhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998865 8899999999999999999999999999999999999999999999889999999999999999999999999


Q ss_pred             HHHHhhhhhhHhhhcchhhHHH--------HHH-hhhhhhhhhceecc
Q 013085          410 TQGLADHNKEMAAAKTDEAKEK--------IVS-LFLEIVCSFCGMIY  448 (449)
Q Consensus       410 ~~~l~~~~K~~~~~kteenk~k--------v~~-~~~~~~~~~~~~~~  448 (449)
                      +++|++|+|++.++|+++++.+        +++ ++.+|+.+.|+.++
T Consensus       398 ~~~l~~~~k~~~~~k~~k~~~~lk~~~q~~~~aLkt~~NI~~lik~L~  445 (556)
T PF05918_consen  398 KQALSEHNKAMSAAKTDKTKAELKTEEQIKVTALKTTNNILALIKDLF  445 (556)
T ss_dssp             HHHH-----------TT--CCHHCSHHHHHHHHHHHHHHHHHHHCC--
T ss_pred             HHHhhhhcccccccCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence            9999888888877777776544        333 48888888887653

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G) Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>cd06561 AlkD_like A new structural DNA glycosylase Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query449
3u0r_A507 Helical Repeat Structure Of Apoptosis Inhibitor 5 R 2e-54
3v6a_A474 Helical Repeat Structure Of Apoptosis Inhibitor 5 R 3e-54
>pdb|3U0R|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals Protein- Protein Interaction Modules Length = 507 Back     alignment and structure 
Iteration: 1

 Score =  209 bits (533), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 156/445 (35%), Positives = 233/445 (52%), Gaps = 53/445 (11%)
Query: 11  IEKLYEFGERLNEAKDKSQNVKD-YEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRA 69
           +E+LY     L +A ++    KD Y+ I++  K   K K+LAAQ IP+FFK FP+L+  A
Sbjct: 7   VEELYRNYGILADATEQVGQHKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSA 66
Query: 70  VDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKAL 129
           ++A LDL E+E++ +R QAI+ LP F   T E L ++ DIL QLL  ++  E + V+ AL
Sbjct: 67  INAQLDLCEDEDVSIRRQAIKELPQFA--TGENLPRVADILTQLLQTDDSAEFNLVNNAL 124
Query: 130 MSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERH 189
           +S+ + D K +L  LF  I        ++ +RE+ + F+  K+  L  E+L   +E+E  
Sbjct: 125 LSIFKMDAKGTLGGLFSQI-----LQGEDIVRERAIKFLSTKLKTLPDEVLT--KEVEEL 177
Query: 190 ITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSD 249
           I    KK LEDVTG EF +FM  L  L      +  +++ EL+     QADL+  FN SD
Sbjct: 178 ILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVA---EQADLEQTFNPSD 234
Query: 250 ADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKL--PEER---KLDLLKALA 304
            D +DRL+ C   A+P F +    ++F+ Y  + ++P    L  P E    +L++LK LA
Sbjct: 235 PDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLA 294
Query: 305 EISPYTTPQDSRQILPSVAVLLKK---YMPL--------RKTGGEE--MNFTYVECLLYT 351
           E+S +    D  ++  ++  L  K   YMPL           G EE  + F+YVECLLY+
Sbjct: 295 EMSSFCG--DMEKLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYS 352
Query: 352 FHHLAHKAPN-ATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLT 410
           FH L  K P+  T  L   K+                 KDF  RL       +  +++L 
Sbjct: 353 FHQLGRKLPDFLTAKLNAEKL-----------------KDFKIRLQYFARGLQVYIRQLR 395
Query: 411 QGLADHNKEMAAAKTDEAKEKIVSL 435
             LA   K   A KT+E K K+V+L
Sbjct: 396 --LALQGKTGEALKTEENKIKVVAL 418
>pdb|3V6A|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals Protein- Protein Interaction Modules Length = 474 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query449
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 1e-119
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Length = 507 Back     alignment and structure
 Score =  356 bits (914), Expect = e-119
 Identities = 144/442 (32%), Positives = 226/442 (51%), Gaps = 47/442 (10%)

Query: 11  IEKLYEFGERLNEAKDK-SQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRA 69
           +E+LY     L +A ++  Q+   Y+ I++  K   K K+LAAQ IP+FFK FP+L+  A
Sbjct: 7   VEELYRNYGILADATEQVGQHKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSA 66

Query: 70  VDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKAL 129
           ++A LDL E+E++ +R QAI+ LP F     E L ++ DIL QLL  ++  E + V+ AL
Sbjct: 67  INAQLDLCEDEDVSIRRQAIKELPQFAT--GENLPRVADILTQLLQTDDSAEFNLVNNAL 124

Query: 130 MSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERH 189
           +S+ + D K +L  LF  I   ++      +RE+ + F+  K+  L  E+L   +E+E  
Sbjct: 125 LSIFKMDAKGTLGGLFSQILQGEDI-----VRERAIKFLSTKLKTLPDEVL--TKEVEEL 177

Query: 190 ITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSD 249
           I    KK LEDVTG EF +FM  L  L      +     ++L+ ++  QADL+  FN SD
Sbjct: 178 ILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGR---QQLVELVAEQADLEQTFNPSD 234

Query: 250 ADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPE-----ERKLDLLKALA 304
            D +DRL+ C   A+P F +    ++F+ Y  + ++P    L       + +L++LK LA
Sbjct: 235 PDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLA 294

Query: 305 EISPYTTPQDS-RQILPSVAVLLKKYMPLRKTGGE----------EMNFTYVECLLYTFH 353
           E+S +    +     L  +   L +YMPL     E          ++ F+YVECLLY+FH
Sbjct: 295 EMSSFCGDMEKLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFH 354

Query: 354 HLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQGL 413
            L  K P+   +                   ++  KDF  RL       +  +++L   L
Sbjct: 355 QLGRKLPDFLTAKLN----------------AEKLKDFKIRLQYFARGLQVYIRQLRLAL 398

Query: 414 ADHNKEMAAAKTDEAKEKIVSL 435
               K   A KT+E K K+V+L
Sbjct: 399 --QGKTGEALKTEENKIKVVAL 418
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query449
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 100.0
2vgl_B 591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 98.09
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 97.89
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 97.83
1w63_A 618 Adapter-related protein complex 1 gamma 1 subunit; 97.67
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 97.63
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 97.58
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 97.57
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 97.55
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 97.55
1b3u_A 588 Protein (protein phosphatase PP2A); scaffold prote 97.54
1qgr_A 876 Protein (importin beta subunit); transport recepto 97.52
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 97.5
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 97.46
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 97.45
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 97.44
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 97.4
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 97.38
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 97.38
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 97.37
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 97.36
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 97.34
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 97.28
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 97.27
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.17
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 97.13
1qgr_A 876 Protein (importin beta subunit); transport recepto 97.12
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 97.11
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 97.11
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 97.1
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 96.97
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 96.97
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 96.87
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 96.82
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 96.75
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 96.73
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 96.48
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 96.37
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 96.28
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 96.18
2vgl_A 621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 95.91
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 95.84
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 95.73
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 95.61
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 95.54
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 95.48
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 95.46
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 95.44
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 95.31
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 95.28
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 95.16
2x19_B963 Importin-13; nuclear transport, protein transport; 94.57
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 94.45
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 94.26
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 93.89
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 93.84
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 93.54
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 93.43
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 93.26
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 93.04
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 93.01
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 92.92
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 92.02
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 91.71
2x1g_F971 Cadmus; transport protein, developmental protein, 91.55
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 91.48
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 91.17
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 90.56
2x1g_F971 Cadmus; transport protein, developmental protein, 86.26
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 86.0
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 86.0
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 84.36
2x19_B 963 Importin-13; nuclear transport, protein transport; 83.52
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 82.77
3jxy_A232 Alkylpurine DNA glycosylase ALKD; heat repeat, DNA 82.53
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 82.47
1hu3_A260 EIF4GII; heat repeat, translation; 2.37A {Homo sap 81.89
2b6c_A220 Hypothetical protein EF3068; structural genomis, D 81.65
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 80.23
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
Probab=100.00  E-value=6.5e-135  Score=1055.15  Aligned_cols=399  Identities=36%  Similarity=0.599  Sum_probs=379.6

Q ss_pred             hhHHHHHHHHHhhhhhhcccc-ccCHHhHHHHHHHccCCHHHHHHHhhhhhHhhccCccchHHHHHHhhhhhcccchhHH
Q 013085            7 EAKQIEKLYEFGERLNEAKDK-SQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVR   85 (449)
Q Consensus         7 ~~~~ie~LY~~~~~L~~akd~-~~~~~~y~~Il~~~kg~~k~K~LaAqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR   85 (449)
                      .|++||+||++||||+||+|+ ++|+++|++||+|+||++|+|||||||||||||+||+|+++|||||+|||||+|++||
T Consensus         3 ~~~~ie~LY~~~~~L~da~dk~~~~~~~y~~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR   82 (507)
T 3u0r_A            3 HMPTVEELYRNYGILADATEQVGQHKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIR   82 (507)
T ss_dssp             --CCHHHHHHHHHHHHHTGGGGGGGHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHH
T ss_pred             CcchHHHHHHHhhHhhhccccccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHH
Confidence            467799999999999999999 7999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccccccccCccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHHccchhhHHHHHHHhhccCCCCCChHHHHHHHH
Q 013085           86 VQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVL  165 (449)
Q Consensus        86 ~qAik~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~ll~~d~k~tL~~lf~qI~~~~~~~~ee~~Re~~l  165 (449)
                      +||||+||.|||+  +|++||||||+|||||||++|+++|||||++|+++|||+||+|+|+||.     ++||.+|||+|
T Consensus        83 ~qaik~Lp~~ck~--~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~-----~~~e~~Rer~l  155 (507)
T 3u0r_A           83 RQAIKELPQFATG--ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQIL-----QGEDIVRERAI  155 (507)
T ss_dssp             HHHHHHGGGGCCT--TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-----HSCHHHHHHHH
T ss_pred             HHHHHhhHHHhhh--hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHHHHHHHHc-----ccchHHHHHHH
Confidence            9999999999999  9999999999999999999999999999999999999999999999999     67899999999


Q ss_pred             HHHhhhcccchhhhcCChHHHHHHHHHHHHhhccccchHHHHHHHHHHHhccccCCCCchhHHHHHHHHHHhhhcccCCC
Q 013085          166 SFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQF  245 (449)
Q Consensus       166 ~Fl~~kl~~l~~e~l~~~~E~E~~i~~~ikK~L~dVt~~EF~l~m~lL~~l~~~~~~~p~~~~qeLv~~i~eqa~Ld~~f  245 (449)
                      +||++|+++++.+++  ++|+|++|+++|||+|+|||++||++||++|+++++|++  |+| +|+||+++.+||+|+.+|
T Consensus       156 kFi~~kl~~l~~~~l--~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t--~~g-~qeLv~ii~eQa~L~~~f  230 (507)
T 3u0r_A          156 KFLSTKLKTLPDEVL--TKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQT--VSG-RQQLVELVAEQADLEQTF  230 (507)
T ss_dssp             HHHHHHGGGSCTTTS--CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSS--HHH-HHHHHHHHHHHHTTTSCC
T ss_pred             HHHHHHHhhcchhhc--cHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccC--chH-HHHHHHHHHHHHhccCCC
Confidence            999999999999999  589999999999999999999999999999999999966  766 799999999999999999


Q ss_pred             CCCChhhHHHHHHHHHHhhhhhccCCChhhHHHHHHHhhccCCCCCChh-----hhHHHHHHHHhhCCCCC-hhhHhhhh
Q 013085          246 NVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEE-----RKLDLLKALAEISPYTT-PQDSRQIL  319 (449)
Q Consensus       246 ~~sD~d~vdrli~Cl~~AlP~fS~~v~Stkfv~y~~~~VlP~l~~L~e~-----~kL~lLK~lAE~s~~~~-~~da~~~l  319 (449)
                      +++|+++|||+|+|+++|+||||+|++|++||+|+|++|||+|++|++.     +||++||+||||||||| .++++++|
T Consensus       231 ~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l  310 (507)
T 3u0r_A          231 NPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNL  310 (507)
T ss_dssp             CSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHH
Confidence            9999999999999999999999999999999999999999999999764     89999999999999999 66699999


Q ss_pred             HHHHHHHHhhCCCCCCC----------CCCcchHHHHHHHHHHHhhhhcCCccccccccceeecCCCCCCCCcChhhhHH
Q 013085          320 PSVAVLLKKYMPLRKTG----------GEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYK  389 (449)
Q Consensus       320 ~~i~~~L~~ymP~~~~~----------~~~l~fs~VEcLLyafH~L~~k~P~~l~~lcg~k~vTgqpsd~~~ed~~~~~k  389 (449)
                      ++||++|++|||+||++          .++|||||||||||+|||||+|+|+|+++                +|++++||
T Consensus       311 ~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~l~e----------------~~~~~~lk  374 (507)
T 3u0r_A          311 RKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFLTA----------------KLNAEKLK  374 (507)
T ss_dssp             HHHHHHHHTTSCCCC--------------CCCHHHHHHHHHHHHHHHTTCTHHHHC----------------C--CCTTH
T ss_pred             HHHHHHHHHHCCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhChhhhcc----------------cccHHHHH
Confidence            99999999999999972          36899999999999999999999999843                35699999


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHhhhcchhhHHHHHHh
Q 013085          390 DFTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKTDEAKEKIVSL  435 (449)
Q Consensus       390 dF~~RLqy~~~~~q~yikkL~~~l~~~~K~~~~~kteenk~kv~~~  435 (449)
                      |||.|||||+||+|+|||||+++|+  ||+++++||||||+||++.
T Consensus       375 dfr~RLqy~ar~~q~yikkL~~~~~--~K~~~~~kteenk~kv~al  418 (507)
T 3u0r_A          375 DFKIRLQYFARGLQVYIRQLRLALQ--GKTGEALKTEENKIKVVAL  418 (507)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT--TCCTTGGGSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc--ccchhhhcchHHHHHHHHH
Confidence            9999999999999999999999997  8999999999999999875
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A* Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14 Back     alignment and structure
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 449
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 3e-06
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 40/322 (12%), Positives = 97/322 (30%), Gaps = 26/322 (8%)

Query: 50  LAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY-LSKIVD 108
           L  +L     K   D   + V   L L+E++   V+  A++ L        EY +  IVD
Sbjct: 27  LMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVD 86

Query: 109 ILVQLLAAEEIVERDAVHKALMSLLRQ---------DVKASLTALFKHIGSVDEPSTDEF 159
            L   + +++   RD     L +++ +                 +   + S      D  
Sbjct: 87  TLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVS 146

Query: 160 IREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKSLEDVTGAEFRMFMDFLKSLSLF 219
           ++ + L  + D +      L+     +   +   +      V           + +L   
Sbjct: 147 VQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKR-------TIIALGHL 199

Query: 220 GEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNY 279
                     +LI  +  +  L    ++S      + I+ +       +      ++L  
Sbjct: 200 VMSCGNIVFVDLIEHLLSE--LSKNDSMSTTRTYIQCIAAISRQAGHRIG-----EYLEK 252

Query: 280 LNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLK--KYMPLRKTGG 337
           +   ++   +   +E +   ++A          +    +   + + LK   Y P      
Sbjct: 253 IIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDD 312

Query: 338 EEMNFTYVECLLYTFHHLAHKA 359
           E+ +   ++             
Sbjct: 313 EDEDENAMDADGGDDDDQGSDD 334

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query449
d2vglb_ 579 Adaptin beta subunit N-terminal fragment {Human (H 98.19
d1b3ua_588 Constant regulatory domain of protein phosphatase 97.47
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.18
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 97.1
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.08
d1b3ua_588 Constant regulatory domain of protein phosphatase 97.08
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.07
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 96.92
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 96.59
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 96.5
d2vgla_ 584 Adaptin alpha C subunit N-terminal fragment {Mouse 96.49
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 96.43
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 96.23
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 96.21
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 96.16
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 96.13
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 95.77
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 95.74
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 95.62
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 95.55
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 95.3
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 94.2
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 94.08
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 93.86
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 93.67
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 93.57
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 93.47
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 93.36
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 93.23
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 91.34
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 89.87
d1ibrb_ 458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 89.69
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 88.92
d1uw4b_248 Regulator of nonsense transcripts 2, UPF2 {Human ( 86.03
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure