Citrus Sinensis ID: 013135

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
Protein Sequence
MIRLVRPELLNVKPIASPLGYGNSFSAFSHRPVTELDKITCTQPLTVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRTHGLTRSQINNFVTKRPSGDLGDTLEPNLKLFKSLGITGANLAEMLNKEHRVLESDAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQGKIKFQGFLK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHcccccccccccHHHHHHHHHHccccHHHHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHccccEEccccccHHHHHHHHHHccccHHHHHHHHHHccccccccccccHHHHHHHHHHHcccHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHcccccccccccccHHHHHHHHHHHHcccccccccHHHHccccHHHHHHHHHHHcccccHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEcHHHHccccccccccccccccccccccccccccccccccEEHHHHHHHccccHHHHHHHccccccccccccHHHHHHHHHccccHHHHHHHHHHcccccHHHccHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHcccHccccHHHccHHHHHHHHHccccHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHcccEEcccHHHHHHHHHHHHHccccHcccEEEEccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHccccHHHHHHccHEEEccHHHHccHHHHHHHHHHHcccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
mirlvrpellnvkpiasplgygnsfsafshrpvteldkitctqpltvsdlqkscgfSLESAVSASEKLRVDTTDKIDSVLKLLRThgltrsqinnfvtkrpsgdlgdtlepNLKLFKSLGITGANLAEMLNKEHRVLESDAYATVEFfrtngfsdsqiksitvkrpkfyvynlkkcmkpkleffKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIekvlepniaILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVkklgfdptnLLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVnklsmepliiskhpYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEhkvpkvvkahqgkikfQGFLK
Flexible Loop (DISEMBL)
mirlvrpellnvkpiasplgygnSFSAFSHRPVTELDKITCTQPLTVSDLQKSCGFSLESavsaseklrvdttdKIDSVLKLlrthgltrsqinnfvtkrpsgdlgdTLEPNLKLFKSLGITGANLAEMLNKEHRVLESDAYATVEFFrtngfsdsqiksitvkrpKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEvkklgfdptNLLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKvpkvvkahqgkikfqgflk
Low Complexity Region (SEG)
MIRLVRPELLNVKPIASPLGYGNSFSAFSHRPVTELDKITCTQPLTVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRTHGLTRSQINNFVTKRPSGDLGDTLEPNLKLFKSLGITGANLAEMLNKEHRVLESDAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQGKIKFQGFLK
Disordered region (IsUnstruct)
*******ELLNVKPIASPLGYGNSFSAFSHRPVTELDKITCTQPLTVSDLQKSCGFSLESAV****KLRVDTTDKIDSVLKLLRTHGLTRSQINNFVTKR***DLGDTLEPNLKLFKSLGITGANLAEMLNKEHRVLESDAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQGKIKF*****
Disordered Region (DISOPRED)
*******ELLN**PI*****************************LTVSDLQKSCGFSLESAVSA**K****TTDKIDSVLKLLRTHGLTRSQINNFVTKRPSGDLGDTLEPNLKLFKSLGITGANLAEMLNKEHRVLESDAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQGKIKFQGFL*
Disordered Region (DISEMBL)
MIRLVRPELLNVKPIASPLGYGNSFSAFSHRPVTELDKITCTQPLTVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRTHGLTRSQINNFVTKRPSGDLGDTLEPNLKLFKSLGITGANLAEMLNKEHRVLESDAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQGKIKFQGFLK
Disordered Region (DISPRO)
MIRLVRPELLNVKP****************************QPLTVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRTHGLTRSQINNFVTKRPSGDLGDTLEPNLKLFKSLGITGANLAEMLNKEHRVLESDAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQGKIKFQGFLK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIRLVRPELLNVKPIASPLGYGNSFSAFSHRPVTELDKITCTQPLTVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRTHGLTRSQINNFVTKRPSGDLGDTLEPNLKLFKSLGITGANLAEMLNKEHRVLESDAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQGKIKFQGFLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	449
255540295	423	conserved hypothetical protein [Ricinus	0.819	0.869	0.534	1e-115
224131208	400	predicted protein [Populus trichocarpa]	0.677	0.76	0.383	8e-58
225432342	384	PREDICTED: uncharacterized protein LOC10	0.668	0.781	0.383	1e-57
255593266	377	conserved hypothetical protein [Ricinus	0.652	0.777	0.394	2e-57
255559286	377	conserved hypothetical protein [Ricinus	0.737	0.877	0.361	1e-56
147817762	379	hypothetical protein VITISV_028995 [Viti	0.670	0.794	0.364	1e-56
255559288	406	conserved hypothetical protein [Ricinus	0.728	0.805	0.359	2e-56
225432336	389	PREDICTED: uncharacterized protein LOC10	0.652	0.753	0.383	3e-56
147853204	384	hypothetical protein VITISV_003242 [Viti	0.668	0.781	0.38	3e-56
18415647	405	Mitochondrial transcription termination	0.668	0.740	0.375	6e-56

>gi|255540295|ref|XP_002511212.1| conserved hypothetical protein [Ricinus communis] gi|223550327|gb|EEF51814.1| conserved hypothetical protein [Ricinus communis]

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/408 (53%), Positives = 290/408 (71%), Gaps = 40/408 (9%)

Query: 43  QPLTVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRTHGLTRSQINNFVTKRPS 102
           Q LT+S LQKS G SLESAVSAS+KL +D+T K D VL LLR +GLT++ I   +T RP 
Sbjct: 47  QSLTLSYLQKSRGLSLESAVSASKKLELDSTKKPDLVLNLLRKYGLTQTHIKYLITNRPI 106

Query: 103 ---GDLGDTLEPNLKLFKSLGITGANLAEMLNKEHRVLESDAYATVEFFRTNGFSDSQIK 159
               D  +TL+ NL++FKSLGI+G +LA+ML+KE RVL+ DA   VEFFR NGFSD QI 
Sbjct: 107 LLLADKDNTLKSNLEVFKSLGISGNSLAKMLSKEPRVLDVDAKTVVEFFRENGFSDKQIT 166

Query: 160 SITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEI 219
            +T+KRP  Y+    K  KPKLEFFKSLGF+EL +A+ LS++PYILERSLEN I+PC+++
Sbjct: 167 ILTMKRPILYLCRAHKNFKPKLEFFKSLGFSELDIAQILSAEPYILERSLENTIMPCVQV 226

Query: 220 LRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQ 279
           LRRV+  D NVLK I+A   +LE +++K+LEPN+ +L NHGVP+S               
Sbjct: 227 LRRVVGDDSNVLKVIKASYRILEVNVKKMLEPNMLLLANHGVPES--------------- 271

Query: 280 STARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAF 339
                           FD      + A+RSM++ +KALW++KLEAY +FGL+ DE++ AF
Sbjct: 272 ----------------FD------IEAVRSMSMTNKALWDRKLEAYRSFGLSNDEIHLAF 309

Query: 340 RRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSN 399
           + QPM M+ SE+KI KLMD +VNKL++ P +ISK+P L+L SLEKRILPRCSVL +LMS 
Sbjct: 310 KLQPMCMLSSEKKIRKLMDFFVNKLNISPSVISKNPNLMLLSLEKRILPRCSVLNILMSK 369

Query: 400 KVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQGKIKFQGF 447
           ++I E F L YM +MTEK F + +V KY+  VP++V+AHQG+++FQGF
Sbjct: 370 ELINEGFKLIYMLRMTEKMFGKNVVTKYQDLVPEIVEAHQGRVEFQGF 417

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131208|ref|XP_002321027.1| predicted protein [Populus trichocarpa] gi|222861800|gb|EEE99342.1| predicted protein [Populus trichocarpa]

 Score =  231 bits (588), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 117/305 (38%), Positives = 188/305 (61%), Gaps = 1/305 (0%)

Query: 143 ATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQP 202
           + +   R +GFS +QI S+  KRP   + N    + PKL+FF SLG +   +A+ LSS P
Sbjct: 95  SVLALLRNHGFSRTQISSLVKKRPFLLLSNPTNTLLPKLDFFLSLGMSRPHLARTLSSDP 154

Query: 203 YILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVP 262
            +L RSLEN I+P    L+ +L +DE ++ A +    +   D+ K L PN+ +L   GVP
Sbjct: 155 TLLTRSLENQIVPSYNFLKTILRSDEKIVSAFKRTTWIFLEDLSKNLIPNLELLRKVGVP 214

Query: 263 KSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSM-AVMSKALWEKK 321
           +S +  L+   P  ++++    ++ ++EV+K+GFDP    FVLA+ ++    +K++WE+ 
Sbjct: 215 QSCISLLLTHFPEAMMENHEEFSENVEEVRKMGFDPNKSTFVLAVHALCGKCNKSIWERC 274

Query: 322 LEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFS 381
            E Y  +G TKD++ SAFR+ P  M++SE+KI K +D +VNK+      I   P +L  S
Sbjct: 275 FEVYKRWGWTKDDILSAFRKHPHCMMLSEKKIMKGLDFFVNKMGWPSKEIVHCPVILFLS 334

Query: 382 LEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQGK 441
           LEKRI+PRC V+Q+L S  +I +D SL  +    EK+F+ER V K+E +VP+++  ++GK
Sbjct: 335 LEKRIIPRCKVIQVLWSKGLIKKDISLNTVLLPVEKRFLERFVTKFEEEVPQLLSVYEGK 394

Query: 442 IKFQG 446
           +  +G
Sbjct: 395 VDPEG 399

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432342|ref|XP_002276393.1| PREDICTED: uncharacterized protein LOC100240766 [Vitis vinifera]

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 115/300 (38%), Positives = 182/300 (60%)

Query: 147 FFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILE 206
           FF ++GFS+SQ   I   +P+  V +  K + PKL FF S G +   + K ++S P IL+
Sbjct: 85  FFNSHGFSESQTSKIVRSQPQLLVSDPDKSLLPKLHFFYSKGASNPDVVKIIASCPVILK 144

Query: 207 RSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLV 266
           RSLEN IIP     +    ++E  +  ++    VL  +    +E NI  L   GVPKS +
Sbjct: 145 RSLENQIIPSFNFFKDFFQSEEVTMATVKRFSRVLIVNPHICVESNINALQESGVPKSNI 204

Query: 267 VKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYM 326
             L+ +QPR  +       +I++EVKK+GFDP+   F  A+++M  MSK+ WE+K++AY 
Sbjct: 205 AALLSLQPRAFMVRPNHFREILEEVKKMGFDPSKTRFPTAVQAMTGMSKSTWERKIDAYK 264

Query: 327 NFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRI 386
            +G ++++++ AF + P  MI SE KI   MD +VNK+  E  +I+  P+L+  SLEKRI
Sbjct: 265 RWGWSEEDIWLAFTKSPWCMIYSEDKIMATMDFFVNKMGRESSLIANRPFLIGLSLEKRI 324

Query: 387 LPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQGKIKFQG 446
           +PR SV+Q+L+S  +I +D SL  +F+ TEK F+E+ V  Y+ + P+++  +Q K+   G
Sbjct: 325 IPRYSVVQVLLSKGLIDKDISLVVLFESTEKMFLEKFVNGYKEEAPQLLNLYQEKVNLSG 384

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255593266|ref|XP_002535825.1| conserved hypothetical protein [Ricinus communis] gi|223521814|gb|EEF26558.1| conserved hypothetical protein [Ricinus communis]

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 116/294 (39%), Positives = 189/294 (64%), Gaps = 1/294 (0%)

Query: 145 VEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYI 204
           ++  R +GF+ SQI S+  K P   + + +K +KPK++F  SLG A+  + K L +   I
Sbjct: 78  LQLLRAHGFTKSQITSLISKHPSIILADSEKTLKPKIQFLDSLGVAKPDIPKILCTDAQI 137

Query: 205 LERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKS 264
           L  SL+N I+P I+ LR +L+TDE V+ A++     L +  + ++  N+  L  HGVP+ 
Sbjct: 138 LVSSLKNRILPTIDYLRGILETDEKVVWALKRCPRALRHGTDTMVS-NVGTLRAHGVPEP 196

Query: 265 LVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEA 324
            +  L +++P TLL      N+++ EVK++GF+P N  F+ A+RSM+VMS++ W++K E 
Sbjct: 197 NIRSLFILEPLTLLLRVDLFNQVVQEVKEMGFEPANKSFIYALRSMSVMSRSHWQRKKEV 256

Query: 325 YMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEK 384
            M+FG ++ E   AF+ QP FM+ SE+K+  LM+ ++ KLS+EP  I K P L L SLEK
Sbjct: 257 LMSFGWSESEFLLAFKLQPFFMLTSEKKMKVLMEFFLTKLSLEPSDIVKCPNLFLVSLEK 316

Query: 385 RILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAH 438
           RI+PRC+ L+LLMS  +I ++ S  +   M++KQF +R +  ++   P+++KA+
Sbjct: 317 RIIPRCTALELLMSKGLIDKNVSFIWELNMSKKQFEKRFITCFKQDSPELIKAY 370

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559286|ref|XP_002520663.1| conserved hypothetical protein [Ricinus communis] gi|223540048|gb|EEF41625.1| conserved hypothetical protein [Ricinus communis]

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 120/332 (36%), Positives = 195/332 (58%), Gaps = 1/332 (0%)

Query: 115 LFKSLGITGANLAEMLNKEHRVLESDAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLK 174
           L  S G++         K H      A   +   +  GF+ +QI S+  KRP   + +  
Sbjct: 43  LVHSCGLSFEAAISSSQKVHLESPKRADTVLALLKDRGFTKTQISSLVKKRPSLLLAHAH 102

Query: 175 KCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAI 234
             + PKLEFF S+G +   +A+ LSS P +L RS+EN I+P    L+ +L ++E ++ A+
Sbjct: 103 NTLLPKLEFFYSIGVSSSDLARTLSSDPTLLTRSIENQIVPSYNFLKSILLSNEKIVSAL 162

Query: 235 RAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKL 294
           +    +   D  K L PN+  L   GV  S +  L+   P  +LQ     NK++ EVK++
Sbjct: 163 KRTTWIFLEDYSKNLMPNVERLREIGVTHSCISLLLTNFPEAVLQRHGEFNKVVKEVKEM 222

Query: 295 GFDPTNLLFVLAIRSMAVMS-KALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKI 353
           GFDP   +FV+A+ +++  S KA+W K  E Y  +  +KD++++AF++ P  M++SE+KI
Sbjct: 223 GFDPKKSIFVMAVHAISGKSNKAIWNKCFEVYKRWDWSKDDIFAAFKKHPHCMMLSEKKI 282

Query: 354 SKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLTYMFK 413
              MD +VNK+ +   +I++ P LL FSLEKRI+PRC V+++LM+  ++ +D SL  +  
Sbjct: 283 MLAMDFFVNKMGLPSKVIAQCPVLLFFSLEKRIVPRCRVIRVLMNKGLVKKDVSLATVLV 342

Query: 414 MTEKQFIERIVKKYEHKVPKVVKAHQGKIKFQ 445
            TEK F++R V KYE +VP +++ ++GKI  Q
Sbjct: 343 PTEKCFLDRFVIKYEEEVPLLLRVYEGKIDVQ 374

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147817762|emb|CAN68940.1| hypothetical protein VITISV_028995 [Vitis vinifera]

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 110/302 (36%), Positives = 188/302 (62%), Gaps = 1/302 (0%)

Query: 141 AYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSS 200
           A + +   R  G +++ I  I  K P  +  + +K + PKLEFF+S+GF+   +A  LSS
Sbjct: 61  ADSVLALLRNYGCTNTHIXKIVSKYPALFTTDPEKTLLPKLEFFRSVGFSGPDIAGILSS 120

Query: 201 QPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHG 260
            PYIL+R L+N++IP    L+ V+  +ENV++ +R    +    ++K + PNIAIL   G
Sbjct: 121 NPYILKRGLQNNLIPTYTFLKSVVMVNENVVRVLRKTHWITVQSVQKAITPNIAILTEIG 180

Query: 261 VPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEK 320
           VP S ++ L+   P  ++Q+  + +  + +V ++GFDP  + F+ A++ +  M +++WE+
Sbjct: 181 VPMSNILFLVTCHPNAVIQNREKFSTSVKKVXEMGFDPLKVSFLKAVQVICGMGESIWEQ 240

Query: 321 KLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLF 380
           ++E Y  +GLT DE+ S FR  P+ M  SE+KI  +MD  VNK+  EP  I+++P + + 
Sbjct: 241 RMEVYKRWGLTDDEIMSMFRLDPLCMRSSEKKIMSVMDFLVNKMGWEPATIARYPTVFMR 300

Query: 381 SLEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQG 440
           SLEK+I+PRCSV+++L    ++ +D  L  +   +E  F ++ V KYE +VP+++  +QG
Sbjct: 301 SLEKKIIPRCSVVKVLQMKGLVKKDLCLG-ILGCSENNFFDKFVLKYEQEVPELLNVYQG 359

Query: 441 KI 442
           KI
Sbjct: 360 KI 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559288|ref|XP_002520664.1| conserved hypothetical protein [Ricinus communis] gi|223540049|gb|EEF41626.1| conserved hypothetical protein [Ricinus communis]

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 118/328 (35%), Positives = 197/328 (60%), Gaps = 1/328 (0%)

Query: 115 LFKSLGITGANLAEMLNKEHRVLESDAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLK 174
           L ++ G++         K H      A A +   R  GFS +QI S+  KRP   + + +
Sbjct: 68  LVRACGLSLEAAVSASQKIHLESPKRADAVLALLRDRGFSKTQISSLVKKRPFLLLAHPQ 127

Query: 175 KCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAI 234
             + PKLEFF S+G +   +A+ LSS P +L RSLEN IIP    L+ +L +DE ++ A+
Sbjct: 128 NTLLPKLEFFYSIGASNSALARALSSDPTLLTRSLENQIIPSYNFLKSILLSDEKIVSAL 187

Query: 235 RAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKL 294
           +    +   D  K L PNI +L   GV  S +  L+   P  L+Q   + +KI+ EV+++
Sbjct: 188 KRTTWIFLEDHSKNLIPNIELLREAGVLHSCISLLLTHFPEALMQRHDKFSKIVKEVREM 247

Query: 295 GFDPTNLLFVLAIRSMAVM-SKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKI 353
            FDP    FVLA+ +++   +K++W K  E YM +G +KD++++AF++ P  M++SE+KI
Sbjct: 248 EFDPKKSTFVLAVHAISGKGNKSIWNKCFEVYMRWGWSKDDIFAAFKKHPHCMMLSEKKI 307

Query: 354 SKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLTYMFK 413
            K MD +VNK+     +I++ P +L FSLEKRI+PRC V+++LM+ +++ ED SL  +  
Sbjct: 308 MKAMDFFVNKMGFPSKVIAQCPVVLFFSLEKRIVPRCRVIRVLMNKRLVKEDVSLASVLL 367

Query: 414 MTEKQFIERIVKKYEHKVPKVVKAHQGK 441
             E+ F++R V ++  ++P+++  ++GK
Sbjct: 368 PVEQCFLDRFVTRFAEEIPRLLSVYEGK 395

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432336|ref|XP_002274817.1| PREDICTED: uncharacterized protein LOC100257952 [Vitis vinifera]

 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 115/300 (38%), Positives = 184/300 (61%)

Query: 143 ATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQP 202
           + + FF ++GFS SQ   I    P+    +  K + PKL+FF S G ++  +AK + S P
Sbjct: 88  SVLAFFNSHGFSKSQTSKIVKSLPRLLASDPDKTLLPKLQFFYSKGASKPDVAKIVVSTP 147

Query: 203 YILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVP 262
            IL+RSLEN IIP    L+  L +DE  +  ++    +L +D+   +  N+  L   GVP
Sbjct: 148 GILKRSLENQIIPSFNFLKDFLQSDEMAITVVKRFSRILLFDLHTYVASNMNALQEFGVP 207

Query: 263 KSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKL 322
           KS +  L++ +P   + +     K ++EVKK+GF+P+ + FVLAI++M    ++ WE+K+
Sbjct: 208 KSNIAGLLMYRPMAFMVNPNLFRKNLEEVKKMGFNPSQMKFVLAIQAMRAGGESCWERKI 267

Query: 323 EAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSL 382
           + Y  +G +++E+  AF + P  MI SE KI   MD +VNK+  E  +I+  P+L+  SL
Sbjct: 268 DIYKKWGWSEEEIRLAFTKSPWCMIYSEDKIMAKMDFFVNKMGRESSLIAHRPFLIGLSL 327

Query: 383 EKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQGKI 442
           EKRI+PR SV+Q+L+S  +I +D SL  +F+ TEK F+ER V  Y+ + P+++K +Q KI
Sbjct: 328 EKRIIPRYSVVQVLLSKGLINKDISLVVLFESTEKTFLERFVNAYKEEAPQLIKLYQEKI 387

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853204|emb|CAN78550.1| hypothetical protein VITISV_003242 [Vitis vinifera]

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 114/300 (38%), Positives = 181/300 (60%)

Query: 147 FFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILE 206
           FF ++GFS+SQ   I   +P+  V +  K +  KL FF S G +   + K ++S P IL+
Sbjct: 85  FFNSHGFSESQTSKIVRSQPQLLVSDPDKSLLLKLHFFYSKGASNPDVVKIIASCPVILK 144

Query: 207 RSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLV 266
           RSLEN IIP     +    ++E  +  ++    VL  +    +E NI  L   GVPKS +
Sbjct: 145 RSLENQIIPSFNFFKDFFQSEEMTMATVKRFSRVLIVNPHICVESNINALQESGVPKSNI 204

Query: 267 VKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYM 326
             L+ +QPR  +       +I++EVKK+GFDP+   F  A+++M  MSK+ WE+K++AY 
Sbjct: 205 AALLSLQPRAFMVRPNHFREILEEVKKMGFDPSKTRFPTAVQAMTGMSKSTWERKIDAYK 264

Query: 327 NFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRI 386
            +G ++++++ AF + P  MI SE KI   MD +VNK+  E  +I+  P+L+  SLEKRI
Sbjct: 265 RWGWSEEDIWLAFTKSPWCMIYSEDKIMATMDFFVNKMGRESSLIANRPFLIGLSLEKRI 324

Query: 387 LPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQGKIKFQG 446
           +PR SV+Q+L+S  +I +D SL  +F+ TEK F+E+ V  Y+ + P+++  +Q K+   G
Sbjct: 325 IPRYSVVQVLLSKGLIDKDISLVVLFESTEKMFLEKFVNGYKEEAPQLLNLYQEKVNLSG 384

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18415647|ref|NP_568185.1| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana] gi|13878065|gb|AAK44110.1|AF370295_1 unknown protein [Arabidopsis thaliana] gi|6562304|emb|CAB62602.1| putative protein [Arabidopsis thaliana] gi|10176724|dbj|BAB09954.1| unnamed protein product [Arabidopsis thaliana] gi|17104655|gb|AAL34216.1| unknown protein [Arabidopsis thaliana] gi|21592327|gb|AAM64278.1| unknown [Arabidopsis thaliana] gi|332003836|gb|AED91219.1| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]

 Score =  224 bits (572), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 188/301 (62%), Gaps = 1/301 (0%)

Query: 145 VEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYI 204
           +   R +GF+ +QI S+  KRP   + N +  + PKL FF S+G ++  +A+ L+S P I
Sbjct: 105 LNLLRDHGFTTAQISSLVKKRPVLLLANAESVLLPKLSFFLSIGVSKSLLARTLASDPTI 164

Query: 205 LERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKS 264
           L RSL N +IP    L+ VLD+DE ++ A+R    V   D  K L PNI  +   GVP+ 
Sbjct: 165 LTRSLVNQLIPSYNFLKSVLDSDEKIVAALRRTTWVFLEDHTKNLVPNINYMAETGVPEK 224

Query: 265 LVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVM-SKALWEKKLE 323
            +  L+   P  ++Q       I  + +++GF+P    FVLAI +++   +K++W+K  E
Sbjct: 225 CIKLLLTHFPEAVMQKNHEFQAIAKQAQEMGFNPQKSTFVLAIHALSGKGNKSIWDKCFE 284

Query: 324 AYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLE 383
            Y  +G ++D++  AF++ P  M++SE+KI++ M+ +VN+++M P  I++ P +L FSLE
Sbjct: 285 VYQRWGWSEDDIMCAFKKHPHCMMLSERKINRTMEYFVNEMNMAPRSIAQCPVVLFFSLE 344

Query: 384 KRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQGKIK 443
           KRI+PRCSV ++L+SN ++ ED+SLT +    EK F+E++V KYE ++P+++  + G  K
Sbjct: 345 KRIIPRCSVTKVLVSNGLVKEDWSLTSLLVPVEKVFLEKLVIKYEEELPELMNLYLGCTK 404

Query: 444 F 444
            
Sbjct: 405 L 405

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	449
TAIR|locus:2142763	405	AT5G07900 "AT5G07900" [Arabido	0.781	0.866	0.354	4.8e-55
TAIR|locus:2199612	390	AT1G21150 "AT1G21150" [Arabido	0.654	0.753	0.298	7e-38
TAIR|locus:2177734	391	AT5G64950 "AT5G64950" [Arabido	0.641	0.736	0.304	2.1e-36
TAIR|locus:2102827	450	AT3G46950 "AT3G46950" [Arabido	0.848	0.846	0.242	4.9e-21
TAIR|locus:1006230704	461	AT1G62085 "AT1G62085" [Arabido	0.935	0.911	0.238	5.6e-21
TAIR|locus:2018062	463	AT1G62150 "AT1G62150" [Arabido	0.886	0.859	0.242	3.8e-20
TAIR|locus:2172798	457	AT5G23930 "AT5G23930" [Arabido	0.835	0.820	0.238	1.1e-19
TAIR|locus:2036843	457	AT1G61960 "AT1G61960" [Arabido	0.959	0.943	0.225	1.8e-19
TAIR|locus:2018042	462	AT1G62110 "AT1G62110" [Arabido	0.895	0.870	0.233	2.5e-19
TAIR|locus:2036868	418	AT1G61980 "AT1G61980" [Arabido	0.873	0.937	0.253	9.3e-18

TAIR|locus:2142763 AT5G07900 "AT5G07900" [Arabidopsis thaliana (taxid:3702)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 127/358 (35%), Positives = 212/358 (59%)

Query:    91 SQINNFVTKRPSGD-LGDTLEPNLK-LFKSLGITGANLAEMLNKEHRVLESDAYATV-EF 147
             S +    +K P  D     L   L  L  S G++  + A + +++  +   +   TV   
Sbjct:    49 SPVTTLTSKNPKDDEQQQKLSFTLNYLIDSCGLS-PDSATVASRKLLLDSPERPNTVLNL 107

Query:   148 FRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILER 207
              R +GF+ +QI S+  KRP   + N +  + PKL FF S+G ++  +A+ L+S P IL R
Sbjct:   108 LRDHGFTTAQISSLVKKRPVLLLANAESVLLPKLSFFLSIGVSKSLLARTLASDPTILTR 167

Query:   208 SLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVV 267
             SL N +IP    L+ VLD+DE ++ A+R    V   D  K L PNI  +   GVP+  + 
Sbjct:   168 SLVNQLIPSYNFLKSVLDSDEKIVAALRRTTWVFLEDHTKNLVPNINYMAETGVPEKCI- 226

Query:   268 KLMLIQ-PRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVM-SKALWEKKLEAY 325
             KL+L   P  ++Q       I  + +++GF+P    FVLAI +++   +K++W+K  E Y
Sbjct:   227 KLLLTHFPEAVMQKNHEFQAIAKQAQEMGFNPQKSTFVLAIHALSGKGNKSIWDKCFEVY 286

Query:   326 MNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKR 385
               +G ++D++  AF++ P  M++SE+KI++ M+ +VN+++M P  I++ P +L FSLEKR
Sbjct:   287 QRWGWSEDDIMCAFKKHPHCMMLSERKINRTMEYFVNEMNMAPRSIAQCPVVLFFSLEKR 346

Query:   386 ILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQGKIK 443
             I+PRCSV ++L+SN ++ ED+SLT +    EK F+E++V KYE ++P+++  + G  K
Sbjct:   347 IIPRCSVTKVLVSNGLVKEDWSLTSLLVPVEKVFLEKLVIKYEEELPELMNLYLGCTK 404

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2199612 AT1G21150 "AT1G21150" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 88/295 (29%), Positives = 159/295 (53%)

Query:   143 ATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQP 202
             + +  F+ +GF++ QI S+    P+    + +  + PKL FF S+GF+    AK +SS P
Sbjct:    90 SVLALFKDHGFTNDQITSVIKSFPRVLSLSPEDVISPKLMFFSSIGFSTSDTAKMISSSP 149

Query:   203 YILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVP 262
              +L  SL   +IPC + L+ +L  +E+V+K ++ G       I   +   ++I    GVP
Sbjct:   150 KMLSYSLHKRLIPCYDSLKSILVEEESVVKCLKRGIRCFSLKITHCVSLRVSICRELGVP 209

Query:   263 KSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKL 322
                +  L+   P T      R N++++ V   GFDP    FV A+ +    S++  E+K 
Sbjct:   210 DKSIKWLVQASPFTFFSRERRFNEVLNRVCSYGFDPKKAGFVHAMVAFDCTSESAMERKF 269

Query:   323 EAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSL 382
             + +  FG +K++  +A  R P  + VS++KI   ++  VN + ++   I   P +L  S+
Sbjct:   270 KLFQCFGWSKEDFVAAIMRFPNCVTVSDEKIMYTLEYLVNNIGLQARDIVARPVVLSLSM 329

Query:   383 EKRILPRCSVLQLLMSNKVIT-EDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVK 436
             EKRI PR  V+ LL+S  ++  ED +   + K+   +F+++ V KY+ ++P++V+
Sbjct:   330 EKRIKPRNQVISLLLSKGLVKKEDINYFTILKLKSSEFMDKFVLKYQDEMPQLVQ 384

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2177734 AT5G64950 "AT5G64950" [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 90/296 (30%), Positives = 165/296 (55%)

Query:   143 ATVEFFRTNGFSDSQI-KSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQ 201
             + ++  ++  FSD+QI KSI V  P+   YN++K ++PKL FFK +GF    + KF+S  
Sbjct:    73 SVIQMLKSYSFSDTQIQKSIRV-HPRMMFYNVEKILEPKLRFFKDIGFTGSGLGKFVSQN 131

Query:   202 PYILERSLENHIIPCIEILRRVLDTDENVLKAI--RAGCLVLEYDIEKVLEPNIAILVNH 259
               ++  SL   +IP +EIL+ ++      L  I  R G L+L  D    L PNI+ L   
Sbjct:   132 SSVVGVSLVKKLIPTVEILKSIVAPKHEDLPVILSRCGWLLLSRDPNLFLLPNISYLETC 191

Query:   260 GVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWE 319
             G+  S +  L+  QPR    S  +L   +     LGF   + + V A+ S++ +S+  ++
Sbjct:   192 GIVGSQLASLLRRQPRIFNLSEEKLRGYVSRALDLGFTLNSRMLVHAVISLSSLSEKTFD 251

Query:   320 KKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLL 379
             +K++ +M  G ++DE+    RR P  +  SE K++   + Y+ ++ +E   ++K P +L 
Sbjct:   252 RKVKLFMANGFSEDEITDIIRRSPGLIRCSEDKLTLGFEFYLKRMGLEREALAKRPCVLS 311

Query:   380 FSLEKRILPRCSVLQLLMSNKVITEDF----SLTYMFKMTEKQFIERIVKKYEHKV 431
             ++LEKR++PR  VLQ+L    ++ ++     ++  + +MTE+ F+E+ V ++  ++
Sbjct:   312 YNLEKRVIPRLKVLQILREKGLLLKEEKKKKNMVGIVEMTEEAFLEKYVVRFGDEI 367

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2102827 AT3G46950 "AT3G46950" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 100/412 (24%), Positives = 194/412 (47%)

Query:    46 TVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRTHGLTRSQINNFVTKRPS--- 102
             TVS L +S G + + A + S+K+  +     DSVL LLR++G   SQI+  +   P    
Sbjct:    54 TVSYLVESLGLTKKLAETISKKVTFEDKVNPDSVLNLLRSNGFKDSQISRIIRAYPRLLV 113

Query:   103 GDLGDTLEPNLKLFKSLGITGANLAEMLNKEHRVLESDAYATVEF---FRTNGFSDSQIK 159
              D   +L P L+  KS G + + + E+++    +L+     +V     F  +   D   K
Sbjct:   114 TDAEKSLRPKLQFLKSRGASSSEVIEIVSNVPTILDKKGEESVSLYYDFVKDIMQDG--K 171

Query:   160 SITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSS--QPYILERSLENHIIPCI 217
             S+ +  P+    N  +     +   + LG  +  +   L S  QP   +   E       
Sbjct:   172 SLCISCPEGKKGNRIR----NISVLRELGVPQKLLFSLLISRYQPVCGKEKFE------- 220

Query:   218 EILRRVLDTDENVLKAIRAGCLVLEYDI-EKVLEPNIAILVNHGVPKSLVVKLMLIQPRT 276
             E L++V+D   +  K+     L + Y++ EK +E  + +    G  ++ +  +    P  
Sbjct:   221 ESLKKVVDMGFDPAKSKFVEALHVVYEMSEKTIEEKVNVYKRLGFSEAEIWAIFKKWPYF 280

Query:   277 LLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKL----EAYMNFGLTK 332
             L  S  ++  + + +KK G     ++ VL  R   + S    E+K+    E ++  G ++
Sbjct:   281 LKFSEKKIILMFETLKKCGLVEEEIISVLKSRPQCIRSS---EQKILDSIEMFLGLGFSR 337

Query:   333 DEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSV 392
             D+     +R P     S + + K  +  V  ++     +   P +L +SLEKRI+PR +V
Sbjct:   338 DDFKMMVKRYPCCTAYSGETLRKKFEVLVKMMNWPLEAVVMIPTVLGYSLEKRIVPRSNV 397

Query:   393 LQLLMSNKVI-TEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKA-HQGKI 442
             ++ LMS  +I +E+  ++ +   T+++F++R V K++  VPK++   ++G++
Sbjct:   398 IKALMSKGLIGSENPPISSVLVCTDQEFLKRYVMKHDKLVPKLMAIFNRGRV 449

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1006230704 AT1G62085 "AT1G62085" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 5.6e-21, P = 5.6e-21
 Identities = 106/445 (23%), Positives = 202/445 (45%)

Query:    10 LNVKPIASPLGYGNSFSAFSHRPVTELDKITCTQPLTVSDLQKSCGFSLESAVSASEKLR 69
             +N+   ASP  + NSFS +++     L         +VS L  S G   + A S S+K+ 
Sbjct:    24 VNLLEKASP--FSNSFS-YANATDASLRAGRKGLSFSVSYLVDSLGLPKKVAESISKKVS 80

Query:    70 VDTTDKIDSVLKLLRTHGLTRSQINNFVTKRPS---GDLGDTLEPNLKLFKSLGITGANL 126
              +     DSVL LLR+HG T SQI++ +T  P     D   ++ P L+  +S G + + L
Sbjct:    81 FEDKGNPDSVLSLLRSHGFTDSQISSIITDYPQLLVADAEKSIGPKLQFLQSRGASRSEL 140

Query:   127 AEMLNKEHRVLESDAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEF--- 183
               +++    +L      T+  +    F    I++    + +   ++L +  K + +    
Sbjct:   141 THIVSTVPEILGKRGDKTISIYYD--FVKEIIEADKSSKFEKLCHSLPEGSKQENKIRNV 198

Query:   184 --FKSLGFAELQMAKFLSS--QPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCL 239
                + LG  +  +   L S  QP   + + E  +   +E     +  D    K ++A  +
Sbjct:   199 LVLRELGVPQRLLFPLLISDHQPVCGKENFEESLKKVVE-----MGFDPTTSKFVKALRV 253

Query:   240 VLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPT 299
             V  +  +K +E  + +  + G     V  +    P  L  S  ++ +  + +KK G    
Sbjct:   254 VYRFR-DKTIEAKVNVCKSLGFSVGDVWAMFKKCPSFLNFSENKIVQTWETLKKCGLLED 312

Query:   300 NLLFVLAIRSMAV-MSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMD 358
             ++L VL      +  S+      +E ++  G ++DEV    +R P  +I+S + + K  +
Sbjct:   313 DVLSVLKKFPQCINASEQKIMNSIETFLGLGFSRDEVAMIAKRFPQCLILSAETVKKKTE 372

Query:   359 CYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDF-SLTYMFKMTEK 417
               V K++     +   P +L +SLEKR +PRC+V++ LMS   +  +   ++ +   T +
Sbjct:   373 FLVKKMNWPLKAVVSTPAVLGYSLEKRTIPRCNVIKALMSKGSLGSELPGMSSVLVCTNE 432

Query:   418 QFIERIVKKYEHK--VPKVVKAHQG 440
             +F+ R VK ++ K  VP+++    G
Sbjct:   433 EFLCRYVKNHDDKKIVPELMAIFTG 457

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2018062 AT1G62150 "AT1G62150" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 3.8e-20, P = 3.8e-20
 Identities = 104/428 (24%), Positives = 195/428 (45%)

Query:    21 YGNSFSAFSHRPVTELDKITCTQPLTVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVL 80
             + NSFS+ +                TVS L  S G + + A S S K+  +     D+VL
Sbjct:    35 FSNSFSSVATAADVSFRDSRKGNNFTVSYLVDSLGLASKLAESISMKVSFENKGNPDTVL 94

Query:    81 KLLRTHGLTRSQINNFVTKRPS---GDLGDTLEPNLKLFKSLGITGANLAEMLNKEHRVL 137
              LLR+H  T SQI++ ++  P+    D  ++L P L L +S G + + L E+++K  ++L
Sbjct:    95 NLLRSHEFTDSQISSIISDYPTLLVADAENSLGPKLLLMQSRGASSSELTEIVSKVPKIL 154

Query:   138 ESDAYATVEFFRTNGFSDSQIKSITV--KRPKF--YVYNLKKCMKPKLEFFKSLGFAELQ 193
                   ++       + D  +K I    K  KF    ++L +  K + +    L   +L 
Sbjct:   155 GMKGDKSI-----GRYYDI-VKEIIEADKSSKFEKLCHSLPEGSKQENKIRNVLVLRDLG 208

Query:   194 MAKFLSSQPYILERSLENHIIPC-----IEILRRVLDT--DENVLKAIRAGCLVLEYDI- 245
             + + L     +      NH + C      E L +V+    D    K + A C+V  Y + 
Sbjct:   209 VPQRL-----LFSLLFSNHHVCCGKEKFEESLNKVVGMGFDPTTPKFVEALCIV--YGLS 261

Query:   246 EKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVL 305
             +K LE N  +    G+  + V +L    P  L  S  R+ +  + +K+ G     +L V 
Sbjct:   262 DKRLEENFNVYKRFGLTVNDVWELFKKCPAFLGYSENRIIQTFEALKRCGLCEDEVLSVF 321

Query:   306 AIRSMAVM-SKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKL 364
                 + +  S+      +E ++  G ++DE     +  P  +  S + + K  +  V K+
Sbjct:   322 KKNPLCLRASEQQILNSMETFIGLGFSRDEFVMMVKCLPQCIGYSAEMVKKKTEFVVKKM 381

Query:   365 SMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFS-LTYMFKMTEKQFIERI 423
             +    +I+  P +L +S+EKR +PRC+V++ LMS  ++  +   +  +   T++ F++R 
Sbjct:   382 NWPLKVITLFPQVLGYSMEKRTVPRCNVIKALMSKGLLGSELPPMASVLACTDQTFLKRY 441

Query:   424 VKKYEHKV 431
             V +++ K+
Sbjct:   442 VVEHDEKL 449

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2172798 AT5G23930 "AT5G23930" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 95/399 (23%), Positives = 181/399 (45%)

Query:    46 TVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRTHGLTRSQINNFVTKRPSGDL 105
             TVS L  S G + + A S S K   D     DSVLKLLR++G   SQI++ ++  P   +
Sbjct:    57 TVSYLIDSLGLTTKLAESISMKANFDEKGNPDSVLKLLRSYGFKDSQISSIISTYPRFLI 116

Query:   106 GD---TLEPNLKLFKSLGITGANLAEMLNKEHRVLESDAYATVEFFRT---NGFSDSQIK 159
              +   TL   L   K  G + + L E+++K  ++L       +  +         D    
Sbjct:   117 ENPEKTLRAKLHFLKLNGASSSELTEIVSKVPKILGKRGGKWISHYYDYVKEILQDQDSS 176

Query:   160 SITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQ--PYILERSLENHIIPCI 217
             S + KR +    N  +     +   + LG  +  +   L S+  P   +   E  +   +
Sbjct:   177 SSSSKRKQT---NRNR----NVSVLRKLGVPQRLLLNLLISRAKPVCGKERFEESVKKIV 229

Query:   218 EILRRVLDTDENVLKAIRAGCLVLEYDI-EKVLEPNIAILVNHGVPKSLVVKLMLIQPRT 276
             E     +  D    K + A  L + Y++ +K +E  +   +  G+  + V  +    P +
Sbjct:   230 E-----MGFDPKSPKFVNA--LYVFYELSDKTIEEKVNAYIRLGLSVNEVWAVFKKWPFS 282

Query:   277 LLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAV-MSKALWEKKLEAYMNFGLTKDEV 335
             L  S   + +  + +K++G     +  V+      V  S+    K ++ ++  G TKDEV
Sbjct:   283 LKYSEKNIIQKFETLKRVGLTKEEVCLVVKKYPECVGTSEEKIVKSVKTFLELGFTKDEV 342

Query:   336 YSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQL 395
                 +R P  + ++   + K  +  V  +     +++  P +L FSLEK +LPRC+V++ 
Sbjct:   343 LMIIKRHPQCIGLAADSVKKKTEFLVKTMGWPLKVVASTPIVLGFSLEKFVLPRCNVIKA 402

Query:   396 LMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKV 434
             LMSN +I E  +++ +    + +F++  V+K++  +P++
Sbjct:   403 LMSNGLIGEMPAISSVLTSPKLKFLKLFVEKHQDVLPEL 441

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2036843 AT1G61960 "AT1G61960" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 1.8e-19, P = 1.8e-19
 Identities = 102/453 (22%), Positives = 198/453 (43%)

Query:     3 RLVR-PELLNVK-PIASPLGYGNSFSAFSHRPVTELDKITCTQPLTVSDLQKSCGFSLES 60
             RLV+  +L N +  + +     NSFS  S    T +D +      TVS L  S G + + 
Sbjct:    10 RLVQLQKLSNFRVSVQNGSALSNSFSFASVADATLIDSLKGNN-FTVSYLVDSLGLTTKL 68

Query:    61 AVSASEKLRVDTTDKIDSVLKLLRTHGLTRSQINNFVTKRP---SGDLGDTLEPNLKLFK 117
             A S S+K+  +     DSVL LL ++G T+SQI++ +T  P   + D   ++ P L+  +
Sbjct:    69 AESISKKVSFEERRNPDSVLSLLTSYGFTKSQISSIITIYPRLLALDAEKSIAPKLQSLQ 128

Query:   118 SLGITGANLAEMLNKEHRVLESDAYA--TVEFFRTNGFSDSQIKSITVKRPKFYVYNLKK 175
             S G + + L ++++   ++L    +   TV +       ++   S   K    +    KK
Sbjct:   129 SRGASSSELTQIVSTVPKILGKRGHKSITVYYDFVKDIIEADKSSSYEKLCHSFPQGNKK 188

Query:   176 CMKPKLEFFKSLGFAELQMAKFLSS--QPYILERSLENHIIPCIEILRRVLDTDENVLKA 233
                  +   + LG A+  +   L S  QP   +   E  +   +E     +  D    K 
Sbjct:   189 NKIRNISVLRELGVAQRLLFPLLISDGQPVCGKERFEESLKKVVE-----MGFDPETTKF 243

Query:   234 IRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKK 293
             + A  ++     +K +E  + +    G   + V  +    P  L  S  ++    + +K 
Sbjct:   244 VEALRVIYRMS-DKTIEEKVNVYKRLGFGVADVWAIFKKWPSFLSYSEKKITHTFETLKS 302

Query:   294 LGFDPTNLLFVLAIRSMAVMS-KALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQK 352
              G     +L +L      + S +      +E ++  G ++DE     +R P  +  + + 
Sbjct:   303 CGLLKHEVLLLLKKHPKCICSSEQKIVNSIETFLGLGFSRDEFAMMVKRYPQCIDYTAET 362

Query:   353 ISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFS----L 408
             + K  +  V  ++     +   P +  +SLEKR +PRC+V++ L+S K + +D S    +
Sbjct:   363 VKKKTEFIVKNMNWPLEALVSIPQVFGYSLEKRTVPRCNVIKTLIS-KGLMKDGSEAPPM 421

Query:   409 TYMFKMTEKQFIERIVKKYEHKVPKVVKAHQGK 441
             + +   T++ F+ R V K++   P+++    G+
Sbjct:   422 SSVLTSTDQAFLRRYVMKHDKLAPELMAIFTGE 454

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2018042 AT1G62110 "AT1G62110" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 99/424 (23%), Positives = 196/424 (46%)

Query:    21 YGNSFSAFSHRPVTELDKITCTQPLTVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVL 80
             + NS+S+ S   ++  D     +  TVS L  S G + + A S S+K+        D VL
Sbjct:    30 FSNSYSSASATDLSSRDGRK-VKNFTVSYLVDSLGLATKLAESISKKVSFVNKGNPDLVL 88

Query:    81 KLLRTHGLTRSQINNFVTKRPSGDLGD---TLEPNLKLFKSLGITGANLAEMLNKEHRVL 137
              L R++G T SQI++ +T  P   L D   +L+  L+  +S G +   L ++++   ++L
Sbjct:    89 SLFRSYGFTNSQISSIITDYPRLLLIDAEKSLDIKLQFLESRGASSPELTQIVSTVPKIL 148

Query:   138 ---ESDAYATV-EFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQ 193
                E  +     +F +    +D   K  T+ +P     N +      +   + LG  +  
Sbjct:   149 GMKEGKSLGRYYDFVKEIIEADKSSKYETLCQP-LPEANRQGNKIRNVSVLRDLGVPQKL 207

Query:   194 MAKFLSS--QPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEP 251
             +   L S  QP   + + E  +   +E+      T    ++A+RA   V  +  +K +E 
Sbjct:   208 LFSLLISDAQPVCGKENFEESLKKVVEM--GFDPTTSKFVQALRA---VYRFT-DKTIEE 261

Query:   252 NIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMA 311
              + +    G     V  +    P  L  S  ++ + I+ +KK G     ++ VL      
Sbjct:   262 RVNVYKGFGFAVEDVWAMFKKCPYFLNSSEKKIGQTIETLKKCGLLEDEVISVLKKYPQC 321

Query:   312 V-MSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLI 370
             +  S+      +E ++  G ++DE  +  +R P  +I+S + + K ++  V K++     
Sbjct:   322 IGTSEQKILNSIEIFLGLGFSRDEFITMVKRFPQCLILSAETVKKKIEFVVKKMNWPLKD 381

Query:   371 ISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFS----LTYMFKMTEKQFIERIVKK 426
             +  +P +L ++LEKR +PRC+V++ LMS +++ +  S    ++ +   T++ F++R V+ 
Sbjct:   382 VVSNPTVLGYNLEKRTVPRCNVIEALMSKRLLGDTGSELPPMSSVLVCTDELFLKRYVRN 441

Query:   427 YEHK 430
             +  K
Sbjct:   442 HGDK 445

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2036868 AT1G61980 "AT1G61980" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 9.3e-18, P = 9.3e-18
 Identities = 106/418 (25%), Positives = 196/418 (46%)

Query:    25 FSAFSH-RPVTELDKITCTQPLTVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLL 83
             +S   H R + EL K    + L       S  FS  SA   S   RV    K  +V  L+
Sbjct:     2 YSLIRHGRSLVELQKWRHLRVLVQKASPLSNSFSSASAARLSP--RVGRKGKSFTVSYLV 59

Query:    84 RTHGLTRSQINNFVTKRPSGDLGDTLEPNLKLFKSLGITGANLAEMLNKEHRVLESDAYA 143
              + GL + ++   V+++ S +  D  +  L L +S G T + ++ ++    ++L +DA  
Sbjct:    60 DSLGLPK-KLAESVSRKVSFEDKDNPDSVLNLLRSHGFTDSQISTIVTDYPQLLVADAEK 118

Query:   144 TV----EFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLS 199
             ++    +F ++ G S S++  I    PK       K +    +F K     +   ++  S
Sbjct:   119 SLAPKLQFLQSRGASSSELTEIVSTVPKILGKRGHKTISVFYDFIKETLLDKSSKSE-KS 177

Query:   200 SQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNH 259
              QP+  + +LEN I   + +LR  L     +L  +   C V  +  EK  E ++  +V  
Sbjct:   178 CQPFP-QGNLENKIRN-LSVLRE-LGMPHKLLFPLLISCDVPVFGKEK-FEESLKKVVEM 233

Query:   260 GV-PK-SLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKAL 317
             G  P  S  V+ + +  R    S   +   ++  K+LGFD    ++ +  R    ++ + 
Sbjct:   234 GFDPSTSKFVEALCVVQRL---SDKNIEDKVNAYKRLGFD-VEYVWTVFKRWPNFLTHS- 288

Query:   318 WEKKL----EAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISK 373
              EKK+    E ++  G ++DE     +R P  + +S + + K  +  V K++     +  
Sbjct:   289 -EKKILNTIETFLGLGFSRDEFSVLIKRFPQGIGLSAEMVKKKTEFLVKKMNWPLKALVS 347

Query:   374 HPYLLLFSLEKRILPRCSVLQLLMSNKVITEDF-SLTYMFKMTEKQFIERIVKKYEHK 430
             +P +L +SLEKR +PR +V+Q L+S  +I  +  S++ +F  T++ F+ R VK++E K
Sbjct:   348 NPAVLGYSLEKRTVPRGNVVQALISKGLIGSELPSISRVFVCTDQVFLNRYVKRHEDK 405

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0005739 "mitochondrion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	449
pfam02536	345	pfam02536, mTERF, mTERF	5e-18
pfam02536	345	pfam02536, mTERF, mTERF	3e-16
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	9e-08

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 84.4 bits (209), Expect = 5e-18
 Identities = 56/243 (23%), Positives = 113/243 (46%), Gaps = 3/243 (1%)

Query: 148 FRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILER 207
            R+ GF+DS I +I    P     + +K ++PKL+F +S G ++ ++ K +S+ P IL +
Sbjct: 4   LRSLGFTDSLISTIIRDYPLLLGADAEKNLQPKLQFLQSRGASKSELTKIVSTVPKILGK 63

Query: 208 SLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVV 267
                I    + L++++  D +    +      L          N+++L   GVP  L+ 
Sbjct: 64  KGVKSISSVYDFLKKIIVADLDKSSKLEKYPESLPQGNNGNKIRNVSVLRELGVPPKLLF 123

Query: 268 KLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAV--MSKALWEKKLEAY 325
            L++ +PR +        + + +V ++GFDPT    V+A R   +   S    +  +E  
Sbjct: 124 SLLISRPRPVCGKE-VFEESLKKVVEMGFDPTTFKRVIAKRPRLLLYSSDKTIKPNVEFL 182

Query: 326 MNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKR 385
            + G + ++V++  ++ P  +  SE+K  +  +       +E L + K     +   E++
Sbjct: 183 KSLGFSVEDVWAILKKCPELLGSSEKKKLQTQEILKTCGLLEFLSVIKKMPQFVSYSEQK 242

Query: 386 ILP 388
           IL 
Sbjct: 243 ILN 245

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 79.4 bits (196), Expect = 3e-16
 Identities = 75/349 (21%), Positives = 143/349 (40%), Gaps = 15/349 (4%)

Query: 80  LKLLRTHGLTRSQINNFVTKRPSGDLGD---TLEPNLKLFKSLGITGANLAEMLNKEHRV 136
           L LLR+ G T S I+  +   P     D    L+P L+  +S G + + L ++++   ++
Sbjct: 1   LSLLRSLGFTDSLISTIIRDYPLLLGADAEKNLQPKLQFLQSRGASKSELTKIVSTVPKI 60

Query: 137 LESDAYAT----VEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAEL 192
           L      +     +F +    +D    S   K P+             +   + LG    
Sbjct: 61  LGKKGVKSISSVYDFLKKIIVADLDKSSKLEKYPESLPQGNNGNKIRNVSVLRELGVPPK 120

Query: 193 QMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPN 252
            +   L S+P  +           ++ +  +        + I     +L Y  +K ++PN
Sbjct: 121 LLFSLLISRPRPVCGKEV--FEESLKKVVEMGFDPTTFKRVIAKRPRLLLYSSDKTIKPN 178

Query: 253 IAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAV 312
           +  L + G     V   +L +   LL S+ +      E+ K       L  +  +     
Sbjct: 179 VEFLKSLGFSVEDVW-AILKKCPELLGSSEKKKLQTQEILKTCGLLEFLSVIKKMPQFVS 237

Query: 313 MSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVN--KLSMEPLI 370
            S+     K+E  +  G +++E+    +R P  + +S +K+ K  +  V      ++ L+
Sbjct: 238 YSEQKILNKIEFLLGLGFSREEIAKMVKRCPQLLGLSVEKVKKKTEFLVKEMNWPLKELV 297

Query: 371 ISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQF 419
             + P +  +SLEKRI PRC+V++ LMS        SL+ M K T+++F
Sbjct: 298 --EFPQVFGYSLEKRIKPRCNVVKALMSKGKSIL-PSLSSMLKCTDEEF 343

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 53.9 bits (130), Expect = 9e-08
 Identities = 75/360 (20%), Positives = 154/360 (42%), Gaps = 32/360 (8%)

Query: 80  LKLLRTHGLTRSQINNF-------VTKRPSGDLGDTLEPNLKLFKSLGITGANLAEMLNK 132
           ++ L   GLT   IN +       V K         + P L   + LG+T ++L E+L +
Sbjct: 96  VEFLHKLGLTIEDINEYPLVLGCSVKK--------NMIPVLDYLEKLGVTRSSLPELLRR 147

Query: 133 EHRVLES----DAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLG 188
             +VL +    D    V++ +        I  +  + P+   + L+  M   + +  S+G
Sbjct: 148 YPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIG 207

Query: 189 FAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKV 248
            A   +   L+  P IL   + N+I P ++ L  +      V + +     +L +D+E+ 
Sbjct: 208 VAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEET 267

Query: 249 LEPNIAILVNHGVPKSLVVKLMLIQPRTL-LQSTARLNKIIDEV-KKLGFDPTNLLFVLA 306
           ++PN+  L+  GV K  +  ++   P  L L   A+L +    +  KL  DP +   V+ 
Sbjct: 268 VKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIE 327

Query: 307 -IRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKL- 364
            +  +  +++ +  K +E     G +  +V     R P  + ++ + +   ++ +  ++ 
Sbjct: 328 KLPQIVSLNRNVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNLEIMKPSLEFFKKEMK 387

Query: 365 -SMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERI 423
             ++ L+  + P    + LE RI PR   +      K I    SL +    ++ +F +R+
Sbjct: 388 RPLKELV--EFPAYFTYGLESRIKPRYERVA----KKGIK--CSLAWFLNCSDDKFEQRM 439

Length = 487

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	449
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
KOG1267	413	consensus Mitochondrial transcription termination	100.0
KOG1267	413	consensus Mitochondrial transcription termination	99.89
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	97.32
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	96.96
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	94.15
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	89.2
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	88.09
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	86.32
PRK00117	157	recX recombination regulator RecX; Reviewed	86.04
PF02631	121	RecX: RecX family; InterPro: IPR003783 RecX is a p	84.29

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=2e-67  Score=544.70  Aligned_cols=370  Identities=19%  Similarity=0.336  Sum_probs=347.6

Q ss_pred             hHHHHHHhcCCCHHHHHHhhcccccCCCcCHHHHHHHHHhCCCCHHHHHHHHhhCCCC---CCCCChhhHHHHHHHcCCC
Q 013135           46 TVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRTHGLTRSQINNFVTKRPSG---DLGDTLEPNLKLFKSLGIT  122 (449)
Q Consensus        46 ~v~~L~~~~Gls~~~~~~~~~~~~~~s~~~~~~v~~~L~~~G~~~~~i~~il~~~P~l---~~~~~l~~~l~~L~~lG~~  122 (449)
                      .++|| +++|++..++.++..  + .+-+.+.++++||+++||++++|.    ++|.+   ++++++.|+++||+++|++
T Consensus        66 ~~~~L-~~lgi~~~~l~~~~~--p-~~~~~~~~~l~~L~s~G~~~~~i~----~~P~iL~~~v~~~l~Pvl~fL~~lG~s  137 (487)
T PLN03196         66 VLDFL-RGIGIDPDELDGLEL--P-STVDVMRERVEFLHKLGLTIEDIN----EYPLVLGCSVKKNMIPVLDYLEKLGVT  137 (487)
T ss_pred             HHHHH-HHcCCCchhhhccCC--C-ccHHHHHHHHHHHHHcCCChHHhc----cCcHHhhcCHhhhhHHHHHHHHHcCCC
Confidence            34788 689999999986532  1 344678899999999999999997    69999   6789999999999999999


Q ss_pred             hHHHHHHHHhhhhhhccc----hhhHHHHHHHCCCChhhHhhHhhhCCceeecCcccchhhHHHHHHHcCCChHHHHHHH
Q 013135          123 GANLAEMLNKEHRVLESD----AYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFL  198 (449)
Q Consensus       123 ~~~l~~~i~~~P~lL~~~----l~~~l~fL~~lGl~~~~i~~il~~~P~lL~~~~e~~l~pkl~fL~~lG~s~~~i~~il  198 (449)
                      ..+++++|.++|.+|..+    +.++++||+++|++.++|++++.++|++|+++++++|.|+++||.++|++.+++++++
T Consensus       138 ~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~il  217 (487)
T PLN03196        138 RSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPML  217 (487)
T ss_pred             HHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            999999999999999864    6789999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCcceeccccccchHHHHHHHHhcCChHHHHHHHHhCCcccccchhhhhHHHHHHHHhCCCChHHHHHHHhhcCccce
Q 013135          199 SSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLL  278 (449)
Q Consensus       199 ~~~P~iL~~s~~~~l~p~v~fL~~~g~~~~~v~~~l~~~P~iL~~s~e~~l~~~v~~L~~lGv~~~~i~~li~~~P~lL~  278 (449)
                      .++|++|+++++++++|+++||+++|++.+++.+++.++|++|+++++++++|++++|+++|++++.++.++..+|.+++
T Consensus       218 ~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~  297 (487)
T PLN03196        218 TRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILG  297 (487)
T ss_pred             HhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCceeE
Confidence            99999999999999999999999999999999999999999999999988999999999999999999999999999999


Q ss_pred             ecch-HHHHHHHHH-HhcCCCCChhH-HHHHHHHHHhcCHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccccChHHHHh
Q 013135          279 QSTA-RLNKIIDEV-KKLGFDPTNLL-FVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISK  355 (449)
Q Consensus       279 ~s~~-~l~~~v~~l-~~lG~~~~~~~-~~~a~~~i~~~s~~~l~~k~~~l~~lG~s~~ev~~~v~~~P~iL~~S~e~l~~  355 (449)
                      ++.+ ++.++++++ +++|+++++.. ++.+.+.++++|+++|++|++||+++||+.++|..||+++|++|++|+++|++
T Consensus       298 ~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il~lSe~kl~~kvefL~~~Gls~edI~~mv~k~P~lL~~S~~~l~~  377 (487)
T PLN03196        298 LDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNRNVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNLEIMKP  377 (487)
T ss_pred             ecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhhcccHHHHHHHHHHHHHcCCCHHHHHHHHHhCCceeeccHHHHHH
Confidence            9865 799999998 59999999864 66778889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCChHHHhhCCceeccCCCCcchhHHHHHHHHHHCCCCCCCcchhhhccccHHHHHHHHhhcCCC
Q 013135          356 LMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEH  429 (449)
Q Consensus       356 k~~fL~~~mg~~~~~i~~~P~~L~~Sle~ri~pR~~~l~~L~~~Gl~~~~~~l~~~l~~se~~F~~~~v~~~~~  429 (449)
                      |++||+++||++.++|+++|+||+||||+||+|||++   |+++|+   ++++.++|++||++|+++||.+|.|
T Consensus       378 k~dFlvneMg~~~~~Iv~fP~~LsySLEkRI~PR~~~---L~~kGl---~~sL~~~L~~sd~~F~~r~v~~y~e  445 (487)
T PLN03196        378 SLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYER---VAKKGI---KCSLAWFLNCSDDKFEQRMSGDFIE  445 (487)
T ss_pred             HHHHHHHHhCCCHHHHHhChHHhccChhhhhHHHHHH---HHHcCC---CCCHHHHhccCHHHHHHHHhhhccc
Confidence            9999999999999999999999999999999999975   568998   6899999999999999999999987

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=4.8e-56  Score=446.58  Aligned_cols=337  Identities=26%  Similarity=0.421  Sum_probs=269.6

Q ss_pred             HHHHhCCCCHHHHHHHHhhCCCC---CCCCChhhHHHHHHHcCCChHHHHHHHHhhhhhhccc----hhhHHHHHHHCCC
Q 013135           81 KLLRTHGLTRSQINNFVTKRPSG---DLGDTLEPNLKLFKSLGITGANLAEMLNKEHRVLESD----AYATVEFFRTNGF  153 (449)
Q Consensus        81 ~~L~~~G~~~~~i~~il~~~P~l---~~~~~l~~~l~~L~~lG~~~~~l~~~i~~~P~lL~~~----l~~~l~fL~~lGl  153 (449)
                      ++|+++||++++|.++++++|.+   ++++++.|+++||.++|++..++++++.++|.+|..+    +.+.++||+++|+
T Consensus         2 ~~~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~   81 (345)
T PF02536_consen    2 DLLKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGL   81 (345)
T ss_dssp             HHHHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS
T ss_pred             hHHHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcC
Confidence            57899999999999999999999   8899999999999999999999999999999999865    6789999999999


Q ss_pred             ChhhHhhHhhhCCceeecCcccchhhHHHHHHHcCCChHHHHHHHHhCCcceeccccccchHHHHHHHHhcCChHHHHHH
Q 013135          154 SDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKA  233 (449)
Q Consensus       154 ~~~~i~~il~~~P~lL~~~~e~~l~pkl~fL~~lG~s~~~i~~il~~~P~iL~~s~~~~l~p~v~fL~~~g~~~~~v~~~  233 (449)
                      +++|+.+++.++|++|..+.++++.+.++||+++|++.+.+.+++..+|.++...  +++.+.++++.++|++++++.++
T Consensus        82 s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~--~~~~~~v~~l~~lG~~~~~~~~v  159 (345)
T PF02536_consen   82 SDEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSS--EKIKERVEFLKELGFDPEKIGRV  159 (345)
T ss_dssp             -HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS---HHHHCHHHHHCCCTSSHHHHCCC
T ss_pred             CHHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccch--hHHHHHHHHHHHhCCCchhhccc
Confidence            9999999999999999999888999999999999999998899999999876665  58999999999999999999999


Q ss_pred             HHhCCcccccchhhhhHHHHHHHHhCCCChHHHHHHHhhcCccceecchHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc
Q 013135          234 IRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVM  313 (449)
Q Consensus       234 l~~~P~iL~~s~e~~l~~~v~~L~~lGv~~~~i~~li~~~P~lL~~s~~~l~~~v~~l~~lG~~~~~~~~~~a~~~i~~~  313 (449)
                      +.++|+++..+.+++++++++||+++|++.+++.+++.++|.++..+.++..+...++.+.|...++ .++.+.+.++..
T Consensus       160 i~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~-~~i~~~p~il~~  238 (345)
T PF02536_consen  160 IAKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEE-RVIKKFPQILSL  238 (345)
T ss_dssp             HHHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC----------------------------TH
T ss_pred             ccccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceeccccccccccccccccccccccc-cccccccccccc
Confidence            9999988888877779999999999999999999999999999999998866677766655555555 777777888888


Q ss_pred             CHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccccChHHHHhHHHHHHHhcCCChHHHhhCCceeccCCCCcchhHHHHH
Q 013135          314 SKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVL  393 (449)
Q Consensus       314 s~~~l~~k~~~l~~lG~s~~ev~~~v~~~P~iL~~S~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~~Sle~ri~pR~~~l  393 (449)
                      +.++++++++||+++|||.+|+++|++++|++|++|.|++++|++||+++||++.++|+++|++|+||||+||+|||+++
T Consensus       239 ~~~~l~~~i~~L~~lG~s~~ei~~mv~~~P~iL~~s~e~l~~k~~fl~~~m~~~~~~i~~~P~~l~~sLe~ri~PR~~~~  318 (345)
T PF02536_consen  239 SEEKLKPKIEFLQSLGFSEEEIAKMVRRFPQILSYSIEKLKPKFEFLVKEMGLPLEEIVEFPQYLSYSLEKRIKPRYEVL  318 (345)
T ss_dssp             HHHHHHHHHHHHHTTT--HHHHHHHHHHSGGGGGS-HHHHHHHHHHHHHCCT--HHHHHHSCHHHCS-HHHHHHHHHHHH
T ss_pred             chHhHHHHHHHHHHhcCcHHHHHHHHHhCcchhhcchhhhhHHHHHHHHHhCcCHHHHhhCCceeEechhhhhhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCCCCcchhhhccccHHHHHH
Q 013135          394 QLLMSNKVITEDFSLTYMFKMTEKQFIE  421 (449)
Q Consensus       394 ~~L~~~Gl~~~~~~l~~~l~~se~~F~~  421 (449)
                      ++|+++|+ ..++++.+++.+||++|++
T Consensus       319 ~~l~~~g~-~~~~sl~~~l~~s~~~F~~  345 (345)
T PF02536_consen  319 KVLKSKGL-IINPSLSSMLSCSDEEFLK  345 (345)
T ss_dssp             HTT--TTT-GGGGGS-HHHHHHHHHHT-
T ss_pred             HHHHHCcC-CCCCCHHHHhhccHHHhcC
Confidence            99999997 7789999999999999974

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=4.9e-47  Score=392.74  Aligned_cols=332  Identities=18%  Similarity=0.285  Sum_probs=299.1

Q ss_pred             HHHHHHhcCCCHHHHHHhhcccccCC-CcCHHHHHHHHHhCCCCHHHHHHHHhhCCCC---CCCCChhhHHHHHHHcCCC
Q 013135           47 VSDLQKSCGFSLESAVSASEKLRVDT-TDKIDSVLKLLRTHGLTRSQINNFVTKRPSG---DLGDTLEPNLKLFKSLGIT  122 (449)
Q Consensus        47 v~~L~~~~Gls~~~~~~~~~~~~~~s-~~~~~~v~~~L~~~G~~~~~i~~il~~~P~l---~~~~~l~~~l~~L~~lG~~  122 (449)
                      |+|| +++|++.+++.+ .+++...+ ..++.++++||+++|+++++|++++.++|.+   +++.++.|+++||+++|++
T Consensus        96 l~~L-~s~G~~~~~i~~-~P~iL~~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs  173 (487)
T PLN03196         96 VEFL-HKLGLTIEDINE-YPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVK  173 (487)
T ss_pred             HHHH-HHcCCChHHhcc-CcHHhhcCHhhhhHHHHHHHHHcCCCHHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCCC
Confidence            3566 789999999983 23333333 4779999999999999999999999999999   7789999999999999999


Q ss_pred             hHHHHHHHHhhhhhhccc----hhhHHHHHHHCCCChhhHhhHhhhCCceeecCcccchhhHHHHHHHcCCChHHHHHHH
Q 013135          123 GANLAEMLNKEHRVLESD----AYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFL  198 (449)
Q Consensus       123 ~~~l~~~i~~~P~lL~~~----l~~~l~fL~~lGl~~~~i~~il~~~P~lL~~~~e~~l~pkl~fL~~lG~s~~~i~~il  198 (449)
                      .+++++++.++|.+|+.+    +.++++||.++|++.++|++++.++|++|++++++++.|+++||+++|++.+++++++
T Consensus       174 ~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il  253 (487)
T PLN03196        174 RQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARIL  253 (487)
T ss_pred             HHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHH
Confidence            999999999999999865    5688999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCcceeccccccchHHHHHHHHhcCChHHHHHHHHhCCcccccchhhhhHHHHHHHH-hCCCChHHHHHHHhhcCccc
Q 013135          199 SSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILV-NHGVPKSLVVKLMLIQPRTL  277 (449)
Q Consensus       199 ~~~P~iL~~s~~~~l~p~v~fL~~~g~~~~~v~~~l~~~P~iL~~s~e~~l~~~v~~L~-~lGv~~~~i~~li~~~P~lL  277 (449)
                      .++|++|++|++++++|+++||+++|++.+++..++.++|.+++.++++++.+++.|+. ++|++++++..++.++|.++
T Consensus       254 ~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il  333 (487)
T PLN03196        254 EKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIV  333 (487)
T ss_pred             HhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhh
Confidence            99999999999999999999999999999999999999999999999988999999995 59999999999999999999


Q ss_pred             eecchHHHHHHHHHHhcCCCCChh-HHHHHHHHHHhcCHHHHHHHHHHHH-HcCCCHHHHHHHHhcCCcccccChH-HHH
Q 013135          278 LQSTARLNKIIDEVKKLGFDPTNL-LFVLAIRSMAVMSKALWEKKLEAYM-NFGLTKDEVYSAFRRQPMFMIVSEQ-KIS  354 (449)
Q Consensus       278 ~~s~~~l~~~v~~l~~lG~~~~~~-~~~~a~~~i~~~s~~~l~~k~~~l~-~lG~s~~ev~~~v~~~P~iL~~S~e-~l~  354 (449)
                      +++.+++.++++|++++|++.++. .++...|.+++.|.+++++|++||. +|||+.++|.    ++|++|+||.| +|+
T Consensus       334 ~lSe~kl~~kvefL~~~Gls~edI~~mv~k~P~lL~~S~~~l~~k~dFlvneMg~~~~~Iv----~fP~~LsySLEkRI~  409 (487)
T PLN03196        334 SLNRNVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNLEIMKPSLEFFKKEMKRPLKELV----EFPAYFTYGLESRIK  409 (487)
T ss_pred             cccHHHHHHHHHHHHHcCCCHHHHHHHHHhCCceeeccHHHHHHHHHHHHHHhCCCHHHHH----hChHHhccChhhhhH
Confidence            999999999999999999999985 4666677888999999999999999 8999999988    89999999998 899


Q ss_pred             hHHHHHHHhcCCChHHHhhCCceeccCCCCcchhHH
Q 013135          355 KLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRC  390 (449)
Q Consensus       355 ~k~~fL~~~mg~~~~~i~~~P~~L~~Sle~ri~pR~  390 (449)
                      +++++|.++ |+..    .-..+|.+| |++..-|+
T Consensus       410 PR~~~L~~k-Gl~~----sL~~~L~~s-d~~F~~r~  439 (487)
T PLN03196        410 PRYERVAKK-GIKC----SLAWFLNCS-DDKFEQRM  439 (487)
T ss_pred             HHHHHHHHc-CCCC----CHHHHhccC-HHHHHHHH
Confidence            999998864 7632    122445555 44665555

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=4.9e-39  Score=323.17  Aligned_cols=304  Identities=25%  Similarity=0.434  Sum_probs=233.4

Q ss_pred             HHHhcCCCHHHHHHhhcccc----cCCCcCHHHHHHHHHhCCCCHHHHHHHHhhCCCC---CCCCChhhHHHHHHHcCCC
Q 013135           50 LQKSCGFSLESAVSASEKLR----VDTTDKIDSVLKLLRTHGLTRSQINNFVTKRPSG---DLGDTLEPNLKLFKSLGIT  122 (449)
Q Consensus        50 L~~~~Gls~~~~~~~~~~~~----~~s~~~~~~v~~~L~~~G~~~~~i~~il~~~P~l---~~~~~l~~~l~~L~~lG~~  122 (449)
                      +++++|++..++.++.++.+    .....++.++++||++.|++..++++++.++|.+   +.++++.|.+++|+++|++
T Consensus         3 ~~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~s   82 (345)
T PF02536_consen    3 LLKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGLS   82 (345)
T ss_dssp             HHHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS-
T ss_pred             HHHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcCC
Confidence            56899999999999976532    3455779999999999999999999999999999   5589999999999999999


Q ss_pred             hHHHHHHHHhhhhhhcc----chhhHHHHHHHCCCChhhHhhHhhhCCceeecCcccchhhHHHHHHHcCCChHHHHHHH
Q 013135          123 GANLAEMLNKEHRVLES----DAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFL  198 (449)
Q Consensus       123 ~~~l~~~i~~~P~lL~~----~l~~~l~fL~~lGl~~~~i~~il~~~P~lL~~~~e~~l~pkl~fL~~lG~s~~~i~~il  198 (449)
                      ++++.+++.++|.+|..    ++.+.++||+++|++.+.+.+++..+|.++...  +++.+.++++.++|++++++++++
T Consensus        83 ~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~--~~~~~~v~~l~~lG~~~~~~~~vi  160 (345)
T PF02536_consen   83 DEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSS--EKIKERVEFLKELGFDPEKIGRVI  160 (345)
T ss_dssp             HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS---HHHHCHHHHHCCCTSSHHHHCCCH
T ss_pred             HHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccch--hHHHHHHHHHHHhCCCchhhcccc
Confidence            99999999999999874    477899999999999998999999999877666  679999999999999999999999


Q ss_pred             HhCCcceeccccccchHHHHHHHHhcCChHHHHHHHHhCCcccccchhhhhHHHHHHHHhCCCChHHHHHHHhhcCccce
Q 013135          199 SSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLL  278 (449)
Q Consensus       199 ~~~P~iL~~s~~~~l~p~v~fL~~~g~~~~~v~~~l~~~P~iL~~s~e~~l~~~v~~L~~lGv~~~~i~~li~~~P~lL~  278 (449)
                      .++|+++..+.+++++|+++||+++|++.+++.+++.++|+++..+.++.+++...++...|...+   .++.++|.++.
T Consensus       161 ~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~---~~i~~~p~il~  237 (345)
T PF02536_consen  161 AKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEE---RVIKKFPQILS  237 (345)
T ss_dssp             HHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC------------------------------T
T ss_pred             cccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceeccccccccccccccccccccccc---ccccccccccc
Confidence            999998888888899999999999999999999999999999999999856554444444444444   88899999999


Q ss_pred             ecchHHHHHHHHHHhcCCCCChh-HHHHHHHHHHhcCHHHHHHHHHHHH-HcCCCHHHHHHHHhcCCcccccChH-HHHh
Q 013135          279 QSTARLNKIIDEVKKLGFDPTNL-LFVLAIRSMAVMSKALWEKKLEAYM-NFGLTKDEVYSAFRRQPMFMIVSEQ-KISK  355 (449)
Q Consensus       279 ~s~~~l~~~v~~l~~lG~~~~~~-~~~~a~~~i~~~s~~~l~~k~~~l~-~lG~s~~ev~~~v~~~P~iL~~S~e-~l~~  355 (449)
                      ++.+++.++++++.++||+.++. .++...|.+++.+.+++++|++|+. ++|++.++|.    ++|++|+||.| +|++
T Consensus       238 ~~~~~l~~~i~~L~~lG~s~~ei~~mv~~~P~iL~~s~e~l~~k~~fl~~~m~~~~~~i~----~~P~~l~~sLe~ri~P  313 (345)
T PF02536_consen  238 LSEEKLKPKIEFLQSLGFSEEEIAKMVRRFPQILSYSIEKLKPKFEFLVKEMGLPLEEIV----EFPQYLSYSLEKRIKP  313 (345)
T ss_dssp             HHHHHHHHHHHHHHTTT--HHHHHHHHHHSGGGGGS-HHHHHHHHHHHHHCCT--HHHHH----HSCHHHCS-HHHHHHH
T ss_pred             cchHhHHHHHHHHHHhcCcHHHHHHHHHhCcchhhcchhhhhHHHHHHHHHhCcCHHHHh----hCCceeEechhhhhhh
Confidence            99999999999999999999885 4777778889999999999999998 7999999987    89999999998 6999


Q ss_pred             H---HHHHHH
Q 013135          356 L---MDCYVN  362 (449)
Q Consensus       356 k---~~fL~~  362 (449)
                      +   +++|.+
T Consensus       314 R~~~~~~l~~  323 (345)
T PF02536_consen  314 RYEVLKVLKS  323 (345)
T ss_dssp             HHHHHHTT--
T ss_pred             HHHHHHHHHH
Confidence            9   555555

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=100.00  E-value=1.4e-33  Score=289.52  Aligned_cols=349  Identities=21%  Similarity=0.319  Sum_probs=312.2

Q ss_pred             ccCCCCCchHHHHHHhcCCCHHHHHHhhcccccCCCcCHHHHHHHHHhCCCCHHHHHHHHhhCCCC---CCCCChhhHHH
Q 013135           38 KITCTQPLTVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRTHGLTRSQINNFVTKRPSG---DLGDTLEPNLK  114 (449)
Q Consensus        38 ~~~~~~~~~v~~L~~~~Gls~~~~~~~~~~~~~~s~~~~~~v~~~L~~~G~~~~~i~~il~~~P~l---~~~~~l~~~l~  114 (449)
                      ...+..++++.|+++++|++...+..+++.+......++++++++|+++|++.++|.+++..+|.+   +.+..+.+.+.
T Consensus        53 ~~~~~~~f~~s~~~~s~~~~~~~~~~~~~~~~~~~~~~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~  132 (413)
T KOG1267|consen   53 LELKGSNFESSYLVDSLGLSIKLARKLSREVSSEDSVNPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLR  132 (413)
T ss_pred             ccccCCCcceeeeccccccchhhHHHHHHHHHhhhccCcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhh
Confidence            344555899999999999999999999998888889999999999999999999999999999999   67888999998


Q ss_pred             HHHHcCCChHHHHHHHHhhhhhhcc----chhhHHHHHHHCC--CChhhHhhHhhhCCceeecCcccchhhHHHHHHHcC
Q 013135          115 LFKSLGITGANLAEMLNKEHRVLES----DAYATVEFFRTNG--FSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLG  188 (449)
Q Consensus       115 ~L~~lG~~~~~l~~~i~~~P~lL~~----~l~~~l~fL~~lG--l~~~~i~~il~~~P~lL~~~~e~~l~pkl~fL~~lG  188 (449)
                      +|...|++..++.+++...|.+|..    ++...++|+.+.+  +....+.+++...|.....  +..+. ++++++++|
T Consensus       133 ~l~~~g~~~s~l~~i~s~~~~il~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~~~~~~~--~~~v~-~~~~~~~lg  209 (413)
T KOG1267|consen  133 LLDSLGLPSSELSSIVSVVPKILLKSKGESLSTFIEFLKSIPPELLSSVVERLLTPVPSFLLN--ENSVE-RLDIRRELG  209 (413)
T ss_pred             hhhccCccccccchhhhccHHHHHhhcCCchhhHHHHhhccchhhhhhHHHHhcccccccccc--ccccc-cchhhHHhC
Confidence            9999999999999999999999873    6778999999984  8888888888888754443  23355 899999999


Q ss_pred             CChHHHHHHHHhCCcceeccccccchHHHHHHHHhcCChHHHHHHHHhCCcccccchhhhhHHHHHHHHhCCCChHHHHH
Q 013135          189 FAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVK  268 (449)
Q Consensus       189 ~s~~~i~~il~~~P~iL~~s~~~~l~p~v~fL~~~g~~~~~v~~~l~~~P~iL~~s~e~~l~~~v~~L~~lGv~~~~i~~  268 (449)
                      ....++...+..+|..+....  .+...+.++...|+.+..  +++.+.|.++.++.++.+++++++|+++|++.++|..
T Consensus       210 ~~~~~L~~~l~~~~~~~~~~~--~l~~~~~~i~~~g~~p~~--~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~  285 (413)
T KOG1267|consen  210 VKPRLLKSLLESQPRPVLLYL--KLKARLPFLLTLGFDPKT--REFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWK  285 (413)
T ss_pred             CCHHHHHHHHhcCccceeeeh--hhhhhhhhHHHhccCCch--hHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHH
Confidence            999999999999999887653  577888888888876554  7888899999999999999999999999999999999


Q ss_pred             HHhhcCccceecchHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccccc
Q 013135          269 LMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIV  348 (449)
Q Consensus       269 li~~~P~lL~~s~~~l~~~v~~l~~lG~~~~~~~~~~a~~~i~~~s~~~l~~k~~~l~~lG~s~~ev~~~v~~~P~iL~~  348 (449)
                      |+.++|.+|+++.+++..+++++.+.  .++    +...++++..++..++++++|+..+|++..|+..|++++|+++.+
T Consensus       286 ~~~k~P~~l~~s~~~~~~~~~~~~~~--~~~----~~k~p~~l~~s~~~l~~~ie~l~~~g~~~~q~~~~~~~~Pq~l~~  359 (413)
T KOG1267|consen  286 MVKKCPQILGYSVKKNLKTTEYLLKN--PKH----ILKFPQLLRSSEDKLKPRIEFLLSLGFSDVQILEMVKRFPQYLSF  359 (413)
T ss_pred             HHHhCchheEeehhhhhHHHHHHHhc--chh----hhhhhhhhhccchhhhhhHHHHHHcCCcHHHHHHHHhhccHHhhh
Confidence            99999999999999999999998766  222    556677778999999999999999999999999999999999999


Q ss_pred             ChH-HHHhHHHHHHHhcCCChHHHhhCCceeccCCCCcchhHHHHHHHHHHC
Q 013135          349 SEQ-KISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSN  399 (449)
Q Consensus       349 S~e-~l~~k~~fL~~~mg~~~~~i~~~P~~L~~Sle~ri~pR~~~l~~L~~~  399 (449)
                      |.+ .++.+.+|+.+.|+++.+.++.+|.++.|++|+|+.||+.+..++..+
T Consensus       360 s~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~y~le~ri~pr~~~~~~~~~~  411 (413)
T KOG1267|consen  360 SLEKILKRKYEYLLKGLLRPLSALVSFPAFFGYSLEKRIRPRFNVIKKLGVK  411 (413)
T ss_pred             hHHhhhhhhHHHHHHHcCchHHHHhccchhhccchhhcchhHHHHHHHHhcc
Confidence            999 899999999999999999999999999999999999999998876544

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.89  E-value=9.8e-23  Score=209.32  Aligned_cols=247  Identities=28%  Similarity=0.386  Sum_probs=211.6

Q ss_pred             ccchhhHHHHHHHCCCChhhHhhHhhhCCceeecCcccchhhHHHHHHHcCCChHHHHHHHHhCCcceeccccccchHHH
Q 013135          138 ESDAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCI  217 (449)
Q Consensus       138 ~~~l~~~l~fL~~lGl~~~~i~~il~~~P~lL~~~~e~~l~pkl~fL~~lG~s~~~i~~il~~~P~iL~~s~~~~l~p~v  217 (449)
                      ..+++.++++|++.|++..+|.+++..+|+++..+.++.+.|+..+|.+.|++..++++++...|.+|+.+.+.++.+.+
T Consensus        88 ~~~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l~~i~s~~~~il~~~~~~~~~~~~  167 (413)
T KOG1267|consen   88 SVNPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLPSSELSSIVSVVPKILLKSKGESLSTFI  167 (413)
T ss_pred             ccCcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCccccccchhhhccHHHHHhhcCCchhhHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999988888999999


Q ss_pred             HHHHHhc--CChHHHHHHHHhCCcccccchhhhhHHHHHHHHhCCCChHHHHHHHhhcCccceecchHHHHHHHHHHhcC
Q 013135          218 EILRRVL--DTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLG  295 (449)
Q Consensus       218 ~fL~~~g--~~~~~v~~~l~~~P~iL~~s~e~~l~~~v~~L~~lGv~~~~i~~li~~~P~lL~~s~~~l~~~v~~l~~lG  295 (449)
                      +|+++++  .....+.+.+...|....  .+..++ ++++++++|+.+..+..++..+|....... .+...+.++..+|
T Consensus       168 ~~l~~~~~~~~~s~~~~~~~~~~~~~~--~~~~v~-~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~-~l~~~~~~i~~~g  243 (413)
T KOG1267|consen  168 EFLKSIPPELLSSVVERLLTPVPSFLL--NENSVE-RLDIRRELGVKPRLLKSLLESQPRPVLLYL-KLKARLPFLLTLG  243 (413)
T ss_pred             HHhhccchhhhhhHHHHhccccccccc--cccccc-cchhhHHhCCCHHHHHHHHhcCccceeeeh-hhhhhhhhHHHhc
Confidence            9999986  445445555544442221  222265 899999999999999999999999876654 8999999999999


Q ss_pred             CCCChhHHHHHHHHHHhcCHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccccChHHHHhHHHHHHHhcCCChHHHhhCC
Q 013135          296 FDPTNLLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHP  375 (449)
Q Consensus       296 ~~~~~~~~~~a~~~i~~~s~~~l~~k~~~l~~lG~s~~ev~~~v~~~P~iL~~S~e~l~~k~~fL~~~mg~~~~~i~~~P  375 (449)
                      |++.+.++++|+..+...+++++++|+++|.++||+.+||..|++++|++|++|++++..+++|+++.    .+++.++|
T Consensus       244 ~~p~~~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s~~~~~~~~~~~~~~----~~~~~k~p  319 (413)
T KOG1267|consen  244 FDPKTREFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGYSVKKNLKTTEYLLKN----PKHILKFP  319 (413)
T ss_pred             cCCchhHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEeehhhhhHHHHHHHhc----chhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999877777777775    33377777


Q ss_pred             ceeccCCCCcchhHHHHH
Q 013135          376 YLLLFSLEKRILPRCSVL  393 (449)
Q Consensus       376 ~~L~~Sle~ri~pR~~~l  393 (449)
                      +++.+|.+ .+.||+.++
T Consensus       320 ~~l~~s~~-~l~~~ie~l  336 (413)
T KOG1267|consen  320 QLLRSSED-KLKPRIEFL  336 (413)
T ss_pred             hhhhccch-hhhhhHHHH
Confidence            77755544 677777444

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=97.32  E-value=0.00018  Score=44.82  Aligned_cols=30  Identities=17%  Similarity=0.321  Sum_probs=26.8

Q ss_pred             HHHhcCCcccccChHHHHhHHHHHHHhcCCC
Q 013135          337 SAFRRQPMFMIVSEQKISKLMDCYVNKLSME  367 (449)
Q Consensus       337 ~~v~~~P~iL~~S~e~l~~k~~fL~~~mg~~  367 (449)
                      .++.++|.++++|.++|+++++||. ++|++
T Consensus         2 ~~~~~~P~il~~~~~~l~~~~~~l~-~~g~~   31 (31)
T smart00733        2 KILKKFPQILGYSEKKLKPKVEFLK-ELGFS   31 (31)
T ss_pred             chhhhCcCcccccHHHhhHHHHHHH-HcCCC
Confidence            4678999999999889999999999 78874

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=96.96  E-value=0.00052  Score=42.67  Aligned_cols=29  Identities=48%  Similarity=0.809  Sum_probs=18.7

Q ss_pred             hHhhhCCceeecCcccchhhHHHHHHHcCC
Q 013135          160 SITVKRPKFYVYNLKKCMKPKLEFFKSLGF  189 (449)
Q Consensus       160 ~il~~~P~lL~~~~e~~l~pkl~fL~~lG~  189 (449)
                      +++.++|+++.++ ++++.++++||+++|+
T Consensus         2 ~~~~~~P~il~~~-~~~l~~~~~~l~~~g~   30 (31)
T smart00733        2 KILKKFPQILGYS-EKKLKPKVEFLKELGF   30 (31)
T ss_pred             chhhhCcCccccc-HHHhhHHHHHHHHcCC
Confidence            3556666666666 4566666666666665

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=94.15  E-value=0.39  Score=48.02  Aligned_cols=68  Identities=22%  Similarity=0.341  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHhc----------CCCCChhHHH-HHH---HHHHhcC--HHHHHHHHHHHH-HcCCCHHHHHHHHhcCCcc
Q 013135          283 RLNKIIDEVKKL----------GFDPTNLLFV-LAI---RSMAVMS--KALWEKKLEAYM-NFGLTKDEVYSAFRRQPMF  345 (449)
Q Consensus       283 ~l~~~v~~l~~l----------G~~~~~~~~~-~a~---~~i~~~s--~~~l~~k~~~l~-~lG~s~~ev~~~v~~~P~i  345 (449)
                      +..+.++..+++          |+++++..+- +|.   .=+++++  ......++..|+ ++|++ +.+..++.+||.|
T Consensus       209 ~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp-~k~~~~l~rHPgI  287 (335)
T PF11955_consen  209 KFREWLEEFQKLPYISPYEDASHLDPGSDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLP-QKFRRLLLRHPGI  287 (335)
T ss_pred             HHHHHHHHHhcCCCCCCCCCccCCCCCChHHHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCc-HHHHHHHHhCCCe
Confidence            455555554443          5556654433 222   2234444  334466777887 79998 5788899999999


Q ss_pred             cccChH
Q 013135          346 MIVSEQ  351 (449)
Q Consensus       346 L~~S~e  351 (449)
                      +..|..
T Consensus       288 FYvS~k  293 (335)
T PF11955_consen  288 FYVSLK  293 (335)
T ss_pred             EEEecc
Confidence            999876

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=89.20  E-value=2.7  Score=37.84  Aligned_cols=23  Identities=13%  Similarity=0.271  Sum_probs=16.9

Q ss_pred             hHHHHHHHcCCChHHHHHHHHhC
Q 013135          179 PKLEFFKSLGFAELQMAKFLSSQ  201 (449)
Q Consensus       179 pkl~fL~~lG~s~~~i~~il~~~  201 (449)
                      ..+..++++|++-++|..++...
T Consensus        49 ~~I~~lr~~G~sL~eI~~ll~~~   71 (172)
T cd04790          49 EQICAYRSAGVSLEDIRSLLQQP   71 (172)
T ss_pred             HHHHHHHHcCCCHHHHHHHHhcC
Confidence            45667778888888888877643

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=88.09  E-value=1.8  Score=39.03  Aligned_cols=143  Identities=18%  Similarity=0.280  Sum_probs=66.0

Q ss_pred             chHHHHHHhcCCCHHHHHHhhcccccCCCcCHH--HHHHHHHhCCCCHHHHHHHHhhCCCCCCCCChhhHHHHHHH----
Q 013135           45 LTVSDLQKSCGFSLESAVSASEKLRVDTTDKID--SVLKLLRTHGLTRSQINNFVTKRPSGDLGDTLEPNLKLFKS----  118 (449)
Q Consensus        45 ~~v~~L~~~~Gls~~~~~~~~~~~~~~s~~~~~--~v~~~L~~~G~~~~~i~~il~~~P~l~~~~~l~~~l~~L~~----  118 (449)
                      -|+.|. ...|+=+...+.- ...+.-+...+.  ..+..|++.||+-++|..++..... +....+...++.+..    
T Consensus        16 ~tLRyY-e~~GLl~p~~r~~-~gyR~Y~~~dl~rL~~I~~lr~~G~sL~eI~~ll~~~~~-~~~~~L~~~~~~l~~ei~~   92 (172)
T cd04790          16 STLLYY-ERIGLLSPSARSE-SNYRLYGERDLERLEQICAYRSAGVSLEDIRSLLQQPGD-DATDVLRRRLAELNREIQR   92 (172)
T ss_pred             HHHHHH-HHCCCCCCCccCC-CCCccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCh-hHHHHHHHHHHHHHHHHHH
Confidence            356666 4567755433221 222222222222  3456677888888888887765321 111112222222211    


Q ss_pred             cCCChHHHHHHHHhhhhhhc---cchhhHHHHHHHCCCChhhHhhHhhhCCceeecCcccchhhHHHHHHHcCCChHHHH
Q 013135          119 LGITGANLAEMLNKEHRVLE---SDAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMA  195 (449)
Q Consensus       119 lG~~~~~l~~~i~~~P~lL~---~~l~~~l~fL~~lGl~~~~i~~il~~~P~lL~~~~e~~l~pkl~fL~~lG~s~~~i~  195 (449)
                      +--....+..++...+..-.   .+-+..++-++..|++++++.+.=..+=+   ..+    ..-.+||.++|++.+++.
T Consensus        93 L~~~~~~l~~ll~~~~~~~~~~~V~~~~w~~l~~~~g~~~~~m~~wh~~fe~---~~p----~~h~~~l~~~g~~~~~~~  165 (172)
T cd04790          93 LRQQQRAIATLLKQPTLLKEQRLVTKEKWVAILKAAGMDEADMRRWHIEFEK---MEP----EAHQEFLQSLGIPEDEIE  165 (172)
T ss_pred             HHHHHHHHHHHHHHHhhccccccCCHHHHHHHHHHcCCChHHHHHHHHHHHH---hCc----HHHHHHHHHcCCCHHHHH
Confidence            22222333333322222211   12345566677777777776443222111   111    123467777888777776


Q ss_pred             HH
Q 013135          196 KF  197 (449)
Q Consensus       196 ~i  197 (449)
                      .|
T Consensus       166 ~i  167 (172)
T cd04790         166 RI  167 (172)
T ss_pred             HH
Confidence            54

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=86.32  E-value=3.4  Score=41.38  Aligned_cols=200  Identities=17%  Similarity=0.230  Sum_probs=107.9

Q ss_pred             HHHhCCCCHHHHHHHHhhCCCC-CC---------CCChhhHHHHHHH--cCCChHHHHHHHHhhhhhhccc-----hhhH
Q 013135           82 LLRTHGLTRSQINNFVTKRPSG-DL---------GDTLEPNLKLFKS--LGITGANLAEMLNKEHRVLESD-----AYAT  144 (449)
Q Consensus        82 ~L~~~G~~~~~i~~il~~~P~l-~~---------~~~l~~~l~~L~~--lG~~~~~l~~~i~~~P~lL~~~-----l~~~  144 (449)
                      +-..+|+....+...+.++|.+ ..         .-.+.+...-|.+  ..+-.+.-..++.+--.+|-.+     +-.+
T Consensus        43 ~~~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~LT~~a~~L~~eE~~~~~~~e~~~v~rL~KLLMMS~~~rlpL~k  122 (335)
T PF11955_consen   43 LRRQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRLTPEAEDLLREERRVREEMEPDLVERLRKLLMMSKDRRLPLSK  122 (335)
T ss_pred             HHHhcCCCcccHHHHHHhCCceEEEeccCCCCCceEEeCHHHHHHHHHHHHHHHhChHHHHHHHHHHhccCCCCcccHHH
Confidence            4457999778999999999999 21         1245555554422  2221111123333333344221     2356


Q ss_pred             HHHHH-HCCCChhhHhhHhhhCCceeecCc---ccchhhHHHHHHHcCCChHHHHHHH---------HhCCcce------
Q 013135          145 VEFFR-TNGFSDSQIKSITVKRPKFYVYNL---KKCMKPKLEFFKSLGFAELQMAKFL---------SSQPYIL------  205 (449)
Q Consensus       145 l~fL~-~lGl~~~~i~~il~~~P~lL~~~~---e~~l~pkl~fL~~lG~s~~~i~~il---------~~~P~iL------  205 (449)
                      +..++ ++|++.+-..+++.++|..+...-   ......-+.+=-++.+|.-|-....         ...|.-|      
T Consensus       123 i~~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~~~~LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp~  202 (335)
T PF11955_consen  123 IAHLRRDLGLPDDFRDSLVPKYPDYFRVVDLEDGGRYLELVSWDPELAVSALEKRAEKEYREKREDGFDRPLAFPVSFPK  202 (335)
T ss_pred             HHHHHHHcCCChhhccchhhhCCCCcEEeecCCCCCEEEEeecCCccCcCccchhhhhccccccccccCCceeeeecCCC
Confidence            77776 899999999999999999876632   1111111122113444433332221         0111111      


Q ss_pred             eccccccchHHHHHHHHhc----------C---ChHHHHHHHHhCCcccccchhhhh-HHHHHHHHh-CCCChHHHHHHH
Q 013135          206 ERSLENHIIPCIEILRRVL----------D---TDENVLKAIRAGCLVLEYDIEKVL-EPNIAILVN-HGVPKSLVVKLM  270 (449)
Q Consensus       206 ~~s~~~~l~p~v~fL~~~g----------~---~~~~v~~~l~~~P~iL~~s~e~~l-~~~v~~L~~-lGv~~~~i~~li  270 (449)
                      ++.+++.....++-|+++-          .   +++.=.+++.-.-.+|+..+++.+ ..++..+++ +|++. .+..++
T Consensus       203 G~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp~-k~~~~l  281 (335)
T PF11955_consen  203 GFRLKKKFREWLEEFQKLPYISPYEDASHLDPGSDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLPQ-KFRRLL  281 (335)
T ss_pred             CccccHHHHHHHHHHhcCCCCCCCCCccCCCCCChHHHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCcH-HHHHHH
Confidence            2223334555555555431          1   111112233333457777776643 345566664 99985 468899


Q ss_pred             hhcCccceecch
Q 013135          271 LIQPRTLLQSTA  282 (449)
Q Consensus       271 ~~~P~lL~~s~~  282 (449)
                      .++|.|+..|..
T Consensus       282 ~rHPgIFYvS~k  293 (335)
T PF11955_consen  282 LRHPGIFYVSLK  293 (335)
T ss_pred             HhCCCeEEEecc
Confidence            999999998753

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>PRK00117 recX recombination regulator RecX; Reviewed

Probab=86.04  E-value=19  Score=31.68  Aligned_cols=126  Identities=11%  Similarity=0.114  Sum_probs=72.3

Q ss_pred             cCHHHHHHHHHhCCCCHHHHHHHHhhCCCCCCCCChhhHHHHHHHcC-CChHHHHHHHHhhhhhhccchhhHHHHHHHCC
Q 013135           74 DKIDSVLKLLRTHGLTRSQINNFVTKRPSGDLGDTLEPNLKLFKSLG-ITGANLAEMLNKEHRVLESDAYATVEFFRTNG  152 (449)
Q Consensus        74 ~~~~~v~~~L~~~G~~~~~i~~il~~~P~l~~~~~l~~~l~~L~~lG-~~~~~l~~~i~~~P~lL~~~l~~~l~fL~~lG  152 (449)
                      ..-..+.+.|.+.|++++.|..+|..                |.+.| ++...++....+.-.--........+-|...|
T Consensus        26 ~s~~el~~kL~~kg~~~~~i~~vl~~----------------l~~~~~ldD~~~a~~~~~~~~~~~~g~~~I~~~L~~kG   89 (157)
T PRK00117         26 HSRAELRRKLAAKGFSEEVIEAVLDR----------------LKEEGLLDDERFAESFVRSRARKGYGPRRIRQELRQKG   89 (157)
T ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHH----------------HHHcCCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHcC
Confidence            44566778888889988888776554                55665 34444444333222111223445678888999


Q ss_pred             CChhhHhhHhhhCCceeecCcccchhhHHHHHHHcCCChHHHHHHHHh-CCcceeccccccchHHHHHHHHhcCChHHHH
Q 013135          153 FSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSS-QPYILERSLENHIIPCIEILRRVLDTDENVL  231 (449)
Q Consensus       153 l~~~~i~~il~~~P~lL~~~~e~~l~pkl~fL~~lG~s~~~i~~il~~-~P~iL~~s~~~~l~p~v~fL~~~g~~~~~v~  231 (449)
                      ++.+.|..++...+    .+.   .              +.+.+++.+ +...-..+. ..-...+.+|.+-|++.+.|.
T Consensus        90 i~~~~I~~~l~~~~----~d~---~--------------e~a~~~~~k~~~~~~~~~~-~~k~Ki~~~L~rkGF~~~~I~  147 (157)
T PRK00117         90 VDREIIEEALAELD----IDW---E--------------ELARELARKKFRRPLPDDA-KEKAKLVRFLARRGFSMDVIQ  147 (157)
T ss_pred             CCHHHHHHHHHHcC----ccH---H--------------HHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHHCCCCHHHHH
Confidence            99999998887654    111   1              111112221 222212221 223455678888888888888


Q ss_pred             HHHHhC
Q 013135          232 KAIRAG  237 (449)
Q Consensus       232 ~~l~~~  237 (449)
                      +++...
T Consensus       148 ~~l~~~  153 (157)
T PRK00117        148 RVLRNA  153 (157)
T ss_pred             HHHHhh
Confidence            777653

>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []

Probab=84.29  E-value=5.2  Score=33.57  Aligned_cols=24  Identities=8%  Similarity=0.097  Sum_probs=15.6

Q ss_pred             chhhHHHHHHHCCCChhhHhhHhh
Q 013135          140 DAYATVEFFRTNGFSDSQIKSITV  163 (449)
Q Consensus       140 ~l~~~l~fL~~lGl~~~~i~~il~  163 (449)
                      ......+-|+..|++.+.|...+.
T Consensus        44 G~~~I~~~L~~kGi~~~~i~~~l~   67 (121)
T PF02631_consen   44 GPRRIRQKLKQKGIDREIIEEALE   67 (121)
T ss_dssp             -HHHHHHHHHHTT--HHHHHHHHT
T ss_pred             cHHHHHHHHHHHCCChHHHHHHHH
Confidence            345566777888888888887776

The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	449
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	2e-44
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	2e-21
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	5e-17
3mva_O	343	Transcription termination factor, mitochondrial; a	3e-26
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-09

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  155 bits (393), Expect = 2e-44
 Identities = 56/291 (19%), Positives = 99/291 (34%), Gaps = 44/291 (15%)

Query: 144 TVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPY 203
           T++     G   S+I+            + +K +K  L F K +G  + Q+  FL+    
Sbjct: 8   TLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHA 67

Query: 204 ILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPK 263
           I    LEN                                     L+  +A L +    K
Sbjct: 68  IFSEDLEN-------------------------------------LKTRVAYLHSKNFSK 90

Query: 264 SLVVKLMLIQPRTLLQSTARLNKIIDEVKK---LGFDPTNLLFVLAIRSMAVMSKALWEK 320
           + V +++   P  L  S  RL+  +   +K   L    T  L V   R +    + + E 
Sbjct: 91  ADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKEN 150

Query: 321 KLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLF 380
                +  G   +E+     R P  +  ++ K+++  D   N +S+   II K P +   
Sbjct: 151 MKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNT 210

Query: 381 SLEKRILPRCSVLQLLMSNKVI---TEDFSLTYMFKMTEKQFIERIVKKYE 428
            L  ++  R   L  L   +         SL  +  + ++ F E I K   
Sbjct: 211 RLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASV 260

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score = 92.6 bits (230), Expect = 2e-21
 Identities = 42/275 (15%), Positives = 91/275 (33%), Gaps = 22/275 (8%)

Query: 77  DSVLKLLRTHGLTRSQINNFVTKRP---SGDLGDTLEPNLKLFKSLGITGANLAEMLNKE 133
              L+ L   G+  S+I             D    ++  L   K +GI    L   L K 
Sbjct: 6   SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKN 65

Query: 134 HRVLESDA---YATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFF-KSLGF 189
           H +   D       V +  +  FS + +  +  K P    +++++ +  +L FF K L  
Sbjct: 66  HAIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELEL 124

Query: 190 AELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVL 249
           +  +    +   P +L  SLE            +      +   I     +L  +  K L
Sbjct: 125 SVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMK-L 183

Query: 250 EPNIAILVNH-GVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLL--FVLA 306
                 + N   +P  ++VK     P+       ++ +    +  LG    +      ++
Sbjct: 184 TETFDFVHNVMSIPHHIIVK----FPQVFNTRLFKVKERHLFLTYLGRAQYDPAKPNYIS 239

Query: 307 IRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRR 341
           +  +  +   ++ ++            + +  F +
Sbjct: 240 LDKLVSIPDEIFCEE------IAKASVQDFEKFLK 268

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score = 79.9 bits (197), Expect = 5e-17
 Identities = 44/241 (18%), Positives = 86/241 (35%), Gaps = 17/241 (7%)

Query: 52  KSCGFSLESAVSASEK----LRVDTTDKIDSVLKLLRTHGLTRSQINNFVTKRP---SGD 104
              G  L       E     LR+D    I  +L  L+  G+  +Q+  F+TK     S D
Sbjct: 13  VLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSED 72

Query: 105 LGDTLEPNLKLFKSLGITGANLAEMLNKEHRVLESDA---YATVEFFRTN-GFSDSQIKS 160
           L + L+  +    S   + A++A+M+ K   +L          + FF+     S  + + 
Sbjct: 73  L-ENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRD 131

Query: 161 ITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEIL 220
           + V+ P+    +L+   +    +   LGF   ++   ++  P +L  +    +    + +
Sbjct: 132 LVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMK-LTETFDFV 190

Query: 221 RRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQS 280
             V+         I     V    + K ++     L   G  +    K   I    L+  
Sbjct: 191 HNVMSIP---HHIIVKFPQVFNTRLFK-VKERHLFLTYLGRAQYDPAKPNYISLDKLVSI 246

Query: 281 T 281
            
Sbjct: 247 P 247

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score =  108 bits (270), Expect = 3e-26
 Identities = 57/388 (14%), Positives = 138/388 (35%), Gaps = 76/388 (19%)

Query: 46  TVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRTHGLTRSQINNFVTKRPSGDL 105
            + +L  + G  ++ A      +          +   L + G ++  I + +++ P    
Sbjct: 22  LLKNLL-TMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYP---- 76

Query: 106 GDTLEPNLKLFKSLGITGANLAEMLNKEHRVLESDAYATVEFFRTNGFSDSQIKSITVKR 165
                                   + +    L        + +R    SD +I +I  + 
Sbjct: 77  ----------------------RAITRTPENLSK----RWDLWRKIVTSDLEIVNILERS 110

Query: 166 PK-FYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVL 224
           P+ F+  N    ++  ++F  S+G     + + L++ P     SL+      +E L+   
Sbjct: 111 PESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQ--- 166

Query: 225 DTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARL 284
                                         + + H  P   V K++   P  L+QST R+
Sbjct: 167 ---------------------------AAGLSLGHNDPADFVRKIIFKNPFILIQSTKRV 199

Query: 285 NKIIDEVKK-LGFDPTNLLFVLAIRSMAVMS------KALWEKKLEAYMNFGLTKDEVYS 337
              I+ ++     +   LL ++      ++       +  +    E   + G T++EV  
Sbjct: 200 KANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQK 259

Query: 338 AFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLM 397
                P  + ++E+K +  +DC +   ++    I ++P +L  S+   +  R   ++ L+
Sbjct: 260 FVLSYPDVIFLAEKKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSR---IKELV 314

Query: 398 SNKVITEDFSLTYMFKMTEKQFIERIVK 425
           +        ++T +   ++K++  ++ K
Sbjct: 315 NAGCNLSTLNIT-LLSWSKKRYEAKLKK 341

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 8e-09
 Identities = 84/511 (16%), Positives = 152/511 (29%), Gaps = 165/511 (32%)

Query: 19  LGYGNSFSAFSHRPVTELDKITCTQPLTVSDLQKSCGFSLESAVSASEKLRVDTTDKI-- 76
             Y +  S F    V   D   C     V D+ KS        +S  E       D I  
Sbjct: 16  YQYKDILSVFEDAFVDNFD---CKD---VQDMPKS-------ILSKEE------IDHIIM 56

Query: 77  --DSVLKLLRTHGLTRSQINNFVTKRPSGDLGDTLEPNLKLFKSLGITGANLAEMLNKEH 134
             D+V   LR      S+    V K     + + L  N K           L   +  E 
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQKF----VEEVLRINYKF----------LMSPIKTEQ 102

Query: 135 R--VLESDAYATVEFFRTNGFSDSQI-KSITVKRPK------------------------ 167
           R   + +  Y      R   ++D+Q+     V R +                        
Sbjct: 103 RQPSMMTRMY---IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159

Query: 168 ----------------------FYVY--NLKKCMKPK--LEFFKSLGFAELQMAKFLSSQ 201
                                 F ++  NLK C  P+  LE  + L     Q+    +S+
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL---LYQIDPNWTSR 216

Query: 202 PYILERSLENHIIPCIEILRR------------VLDT--DENVLKAIRAGC--LVLEYDI 245
                  ++  I      LRR            VL    +     A    C  L+     
Sbjct: 217 SDHSSN-IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275

Query: 246 EKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIID-EVKKL-----GFDPT 299
                  +   ++      + +        T  +  + L K +D   + L       +P 
Sbjct: 276 ------QVTDFLSAATTTHISLDHHS-MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 300 NL-LFVLAIRSMAVMSKALWE-----------KKLEAYMNFGLTKDEVYSAFRRQPMFM- 346
            L +   +IR       A W+             +E+ +N  L   E    F R  +F  
Sbjct: 329 RLSIIAESIRDG----LATWDNWKHVNCDKLTTIIESSLNV-LEPAEYRKMFDRLSVFPP 383

Query: 347 --IVSEQKISKLMDCYVNKLSMEP-LIISK-HPYLLLFSLEKRILP-RCSVLQLLMSNKV 401
              +    +S +   + + +  +  ++++K H Y L   +EK+      S+  + +  KV
Sbjct: 384 SAHIPTILLSLI---WFDVIKSDVMVVVNKLHKYSL---VEKQPKESTISIPSIYLELKV 437

Query: 402 -ITEDFSLTYMFKMTEKQFIER--IVKKYEH 429
            +  +++L        +  ++   I K ++ 
Sbjct: 438 KLENEYAL-------HRSIVDHYNIPKTFDS 461

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	449
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	99.94
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	99.37
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	98.85
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	93.58
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	93.05
4hpz_A	463	Dtale2; DNA binding protein, N-terminal domain; 2.	93.02
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	92.34
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	90.15
4hpz_A	463	Dtale2; DNA binding protein, N-terminal domain; 2.	88.92
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	88.16
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	87.66
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	87.59
2w84_A	70	Peroxisomal membrane protein PEX14; zellweger synd	83.82
3dfg_A	162	Xcrecx, regulatory protein RECX; RECX RECA, homolo	83.3
3e3v_A	177	Regulatory protein RECX; PSI-II, NYSGXRC, structur	81.54
2w84_A	70	Peroxisomal membrane protein PEX14; zellweger synd	80.05

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=4.9e-53  Score=422.48  Aligned_cols=313  Identities=17%  Similarity=0.245  Sum_probs=237.3

Q ss_pred             cCCCCCchHHHHHHhcCCCHHHHHHhhcccccCCCcCHHHHHHHHHhCCCCHHHHHHHHhhCCCCCCCCChhhHHHHHHH
Q 013135           39 ITCTQPLTVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRTHGLTRSQINNFVTKRPSGDLGDTLEPNLKLFKS  118 (449)
Q Consensus        39 ~~~~~~~~v~~L~~~~Gls~~~~~~~~~~~~~~s~~~~~~v~~~L~~~G~~~~~i~~il~~~P~l~~~~~l~~~l~~L~~  118 (449)
                      ++.++..+|.|| ++||++.++|.++.+++.+.++++++++++||+++|+++++|++++.++|.                
T Consensus        15 ~~~~~~~~v~~L-~s~Gl~~~~~~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~----------------   77 (343)
T 3mva_O           15 EPLKNEDLLKNL-LTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPR----------------   77 (343)
T ss_dssp             -----CCHHHHH-HHHTCCHHHHHHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGG----------------
T ss_pred             CccccHHHHHHH-HHcCCCHHHHHHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcH----------------
Confidence            445677889999 799999999999999998899999999999999999999999888777443                


Q ss_pred             cCCChHHHHHHHHhhhhhhcc---chhhHHHHHHHCCCChhhHhhHhhhCCceeecCcc-cchhhHHHHHHHcCCChHHH
Q 013135          119 LGITGANLAEMLNKEHRVLES---DAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLK-KCMKPKLEFFKSLGFAELQM  194 (449)
Q Consensus       119 lG~~~~~l~~~i~~~P~lL~~---~l~~~l~fL~~lGl~~~~i~~il~~~P~lL~~~~e-~~l~pkl~fL~~lG~s~~~i  194 (449)
                                       +|..   ++.++++||+++|++++++++++.++|++|..+.+ +++.|+++||+++|++.+++
T Consensus        78 -----------------lL~~~~~~l~p~l~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i  140 (343)
T 3mva_O           78 -----------------AITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCL  140 (343)
T ss_dssp             -----------------GGGCCHHHHHHHHHHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHH
T ss_pred             -----------------HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHH
Confidence                             3322   24455666666666666666777777774333333 36777777777777777777


Q ss_pred             HHHHHhCCcceeccccccchHHHHHHHHhcCC------hHHHHHHHHhCCcccccchhhhhHHHHHHHHh-CCCChHHHH
Q 013135          195 AKFLSSQPYILERSLENHIIPCIEILRRVLDT------DENVLKAIRAGCLVLEYDIEKVLEPNIAILVN-HGVPKSLVV  267 (449)
Q Consensus       195 ~~il~~~P~iL~~s~~~~l~p~v~fL~~~g~~------~~~v~~~l~~~P~iL~~s~e~~l~~~v~~L~~-lGv~~~~i~  267 (449)
                      ++++.++|++|+++++++ +++++||+++|++      .+.|.+++.++|++++.+ +++++++++||++ +|++.+++.
T Consensus       141 ~~ll~~~P~il~~~~e~~-~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~  218 (343)
T 3mva_O          141 CRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELL  218 (343)
T ss_dssp             HHHHHHCGGGGTSCHHHH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHhCChhheeCHHHh-hHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHH
Confidence            777777777777776654 7777777766542      456777777777777777 3447777777774 777777777


Q ss_pred             HHHhhcC-ccceecchHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccc
Q 013135          268 KLMLIQP-RTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFM  346 (449)
Q Consensus       268 ~li~~~P-~lL~~s~~~l~~~v~~l~~lG~~~~~~~~~~a~~~i~~~s~~~l~~k~~~l~~lG~s~~ev~~~v~~~P~iL  346 (449)
                      .++...| .++..+.+.+++++.++                              .++|.++|||++|+..|+.++|++|
T Consensus       219 ~~i~~~~~~~l~~s~~~l~~~~~~l------------------------------~e~~~~lG~s~~ev~~~v~~~P~il  268 (343)
T 3mva_O          219 VLICGPGAEILDLSNDYARRSYANI------------------------------KEKLFSLGCTEEEVQKFVLSYPDVI  268 (343)
T ss_dssp             HHHHTTTGGGGGCCTTHHHHHHHHH------------------------------HHHHHTTTCCHHHHHHHHHTCGGGG
T ss_pred             HHHhcCChHHhhccHHHHHHHHHHH------------------------------HHHHHHcCCCHHHHHHHHHhCCchh
Confidence            6666544 45555544444433333                              2345579999999999999999999


Q ss_pred             ccChHHHHhHHHHHHHhcCCChHHHhhCCceeccCCCCcchhHHHHHHHHHHCCCCCCCcchh--hhccccHHHHHHHHh
Q 013135          347 IVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKVITEDFSLT--YMFKMTEKQFIERIV  424 (449)
Q Consensus       347 ~~S~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~~Sle~ri~pR~~~l~~L~~~Gl~~~~~~l~--~~l~~se~~F~~~~v  424 (449)
                      ++|+|+|++|++||++ ||++.++|+++|++|+||+| ||+|||   ++|+++|+   ++++.  +||++||++|.++|.
T Consensus       269 ~~s~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~---~~L~~~g~---~~~~~~~~~l~~s~~~F~~~~~  340 (343)
T 3mva_O          269 FLAEKKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRI---KELVNAGC---NLSTLNITLLSWSKKRYEAKLK  340 (343)
T ss_dssp             GSCHHHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHH---HHHHTTTC---CSSSSCGGGGGSCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHH---HHHHHCCC---CCCCCcchhhcCCHHHHHHHHh
Confidence            9999999999999999 99999999999999999999 999999   67789998   45555  999999999999996


Q ss_pred             h
Q 013135          425 K  425 (449)
Q Consensus       425 ~  425 (449)
                      +
T Consensus       341 ~  341 (343)
T 3mva_O          341 K  341 (343)
T ss_dssp             H
T ss_pred             c
Confidence            4

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=7.1e-49  Score=380.03  Aligned_cols=257  Identities=20%  Similarity=0.303  Sum_probs=239.3

Q ss_pred             hhHHHHHHHCCCChhhHhhHhhhCCceeecCcccchhhHHHHHHHcCCChHHHHHHHHhCCcceeccccccchHHHHHHH
Q 013135          142 YATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILR  221 (449)
Q Consensus       142 ~~~l~fL~~lGl~~~~i~~il~~~P~lL~~~~e~~l~pkl~fL~~lG~s~~~i~~il~~~P~iL~~s~~~~l~p~v~fL~  221 (449)
                      .++++||.++|++..+|.+....+|.+|.+++++++.|+++||.++|++++++++++.++|++|++++++ ++|+++||+
T Consensus         6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~   84 (270)
T 3m66_A            6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH   84 (270)
T ss_dssp             HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence            4789999999999999998888888889999999999999999999999999999999999999999997 999999999


Q ss_pred             HhcCChHHHHHHHHhCCcccccchhhhhHHHHHHH-HhCCCChHHHHHHHhhcCccceecchHHHHHHHHHHhcCCCCCh
Q 013135          222 RVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAIL-VNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTN  300 (449)
Q Consensus       222 ~~g~~~~~v~~~l~~~P~iL~~s~e~~l~~~v~~L-~~lGv~~~~i~~li~~~P~lL~~s~~~l~~~v~~l~~lG~~~~~  300 (449)
                      ++|++++++.+++.++|++|+.++++ ++++++|| .++|++.+++.+++.++|.+++.+.+                  
T Consensus        85 ~~Gls~~~i~~~l~~~P~lL~~s~~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e------------------  145 (270)
T 3m66_A           85 SKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE------------------  145 (270)
T ss_dssp             HTTCCHHHHHHHHHHSTTGGGSCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH------------------
T ss_pred             HcCCCHHHHHHHHHhCCHHHcCCHHH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH------------------
Confidence            99999999999999999999999997 99999999 57999999999999999999988754                  


Q ss_pred             hHHHHHHHHHHhcCHHHHHHHHHHHH-HcCCCHHHHHHHHhcCCcccccChHHHHhHHHHHHHhcCCChHHHhhCCceec
Q 013135          301 LLFVLAIRSMAVMSKALWEKKLEAYM-NFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLL  379 (449)
Q Consensus       301 ~~~~~a~~~i~~~s~~~l~~k~~~l~-~lG~s~~ev~~~v~~~P~iL~~S~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~  379 (449)
                                      +++++++++. ++|||.+|+..|+.++|++|++|.++|+++++||+++||++.++|+++|++|+
T Consensus       146 ----------------~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~  209 (270)
T 3m66_A          146 ----------------PVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFN  209 (270)
T ss_dssp             ----------------HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHHCGGGGG
T ss_pred             ----------------HHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHHHhCchHhh
Confidence                            4556667654 89999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcchhHHHHHHHHHHCCCCCCC---cchhhhccccHHHHHHHHhhcCCCchhHHH
Q 013135          380 FSLEKRILPRCSVLQLLMSNKVITED---FSLTYMFKMTEKQFIERIVKKYEHKVPKVV  435 (449)
Q Consensus       380 ~Sle~ri~pR~~~l~~L~~~Gl~~~~---~~l~~~l~~se~~F~~~~v~~~~~~~p~l~  435 (449)
                      ||+| ||+|||.++++|.++|+..++   +++.+++.+||++|+++|++.+.|+.-...
T Consensus       210 ~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F~~~~~~~~~eey~~f~  267 (270)
T 3m66_A          210 TRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQDFEKFL  267 (270)
T ss_dssp             SCHH-HHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHHHHHTTCSCHHHHHHHH
T ss_pred             CCHH-HHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHHHHHHhcCCHHHHHHHH
Confidence            9999 999999999999999997655   678889999999999999999987665443

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=100.00  E-value=2.1e-36  Score=298.05  Aligned_cols=225  Identities=13%  Similarity=0.135  Sum_probs=161.1

Q ss_pred             hhhHHHHHHHcCCChHHHHHHHHhCCcceeccccccchHHHHHHHHhcCChHHHHHHHHhCCcccccchhhhhHHHHHHH
Q 013135          177 MKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAIL  256 (449)
Q Consensus       177 l~pkl~fL~~lG~s~~~i~~il~~~P~iL~~s~~~~l~p~v~fL~~~g~~~~~v~~~l~~~P~iL~~s~e~~l~~~v~~L  256 (449)
                      +...+.+|.++|+++.+|++++.++|.++..    ++.+.+.||..+|++.++|.++|.++|++|+.++++ ++++++||
T Consensus        46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~-L~~~l~fL  120 (335)
T 4fp9_B           46 LERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQ-MRKRSSYL  120 (335)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHH-HHHHHHHH
Confidence            3344444555555555555555555554432    244455555555555555555555555555555554 66666666


Q ss_pred             HhCCCChHHHHHHHhhcCccceecchHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCHHHHHHHHHHHH-HcCCCHHHH
Q 013135          257 VNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYM-NFGLTKDEV  335 (449)
Q Consensus       257 ~~lGv~~~~i~~li~~~P~lL~~s~~~l~~~v~~l~~lG~~~~~~~~~~a~~~i~~~s~~~l~~k~~~l~-~lG~s~~ev  335 (449)
                      +++|++.+++.+++.++|++|+++.                                  +.++.++.+|. ++|||.+||
T Consensus       121 ~~lGl~~~~i~~ll~~~P~lL~~s~----------------------------------e~i~~~v~~L~~~lGfS~~ev  166 (335)
T 4fp9_B          121 QKLGLGEGKLKRVLYCCPEIFTMRQ----------------------------------QDINDTVRLLKEKCLFTVQQV  166 (335)
T ss_dssp             HHTTCTTTTHHHHHHHCGGGGTSCH----------------------------------HHHHHHHHHHHHTSCCCHHHH
T ss_pred             HHcCCCHHHHHHHHHhCchhhccCh----------------------------------HHHHHHHHHHHHHcCCCHHHH
Confidence            6666666666666666666655543                                  33344555565 799999999


Q ss_pred             HHHHhcCCcccccChHHHHhHHHHHHHhcCCChHHHhhCCceeccCCCCcchhHHHHHHHHHHCCC-------CCCCcch
Q 013135          336 YSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIISKHPYLLLFSLEKRILPRCSVLQLLMSNKV-------ITEDFSL  408 (449)
Q Consensus       336 ~~~v~~~P~iL~~S~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~~Sle~ri~pR~~~l~~L~~~Gl-------~~~~~~l  408 (449)
                      ..||.++|+||++|.++|++|++||+++||+++.+|++ |.+|+||++ ||+|||.+|+.|.....       ..++++|
T Consensus       167 ~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL  244 (335)
T 4fp9_B          167 TKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLL  244 (335)
T ss_dssp             HHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCH
T ss_pred             HHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccH
Confidence            99999999999999999999999999999999999998 999999999 99999988776643211       2246789


Q ss_pred             hhhccccHHHHHHHHhhcCCCchhHHHHHHhccc
Q 013135          409 TYMFKMTEKQFIERIVKKYEHKVPKVVKAHQGKI  442 (449)
Q Consensus       409 ~~~l~~se~~F~~~~v~~~~~~~p~l~~~y~~~~  442 (449)
                      .+++..||++|+.++.+...++.-...+.+....
T Consensus       245 ~~il~~sd~~F~~~vA~~s~eey~~F~k~~~~e~  278 (335)
T 4fp9_B          245 KDILRVSEAEFLARTACTSVEEFQVFKKLLAREE  278 (335)
T ss_dssp             HHHTTSCHHHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHhcCHHHHHHHHHHHHhhh
Confidence            9999999999999999999988888888876544

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=8.6e-34  Score=274.18  Aligned_cols=212  Identities=13%  Similarity=0.236  Sum_probs=194.1

Q ss_pred             hhHHHHHHHcCCChHHHHHHHHhhhhhhcc----chhhHHHHHHHCCCChhhHhhHhhhCCceeecCcccchhhHHHHHH
Q 013135          110 EPNLKLFKSLGITGANLAEMLNKEHRVLES----DAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFK  185 (449)
Q Consensus       110 ~~~l~~L~~lG~~~~~l~~~i~~~P~lL~~----~l~~~l~fL~~lGl~~~~i~~il~~~P~lL~~~~e~~l~pkl~fL~  185 (449)
                      .+++++|.++|++.+++.+...-+|.+|..    ++.++++||+++|+++++|++++.++|++|.+++++ +.|+++||+
T Consensus         6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~   84 (270)
T 3m66_A            6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH   84 (270)
T ss_dssp             HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence            478888888999988887777777777875    467899999999999999999999999999999987 999999999


Q ss_pred             HcCCChHHHHHHHHhCCcceeccccccchHHHHHH-HHhcCChHHHHHHHHhCCcccccchhhhhHHHHHHH-HhCCCCh
Q 013135          186 SLGFAELQMAKFLSSQPYILERSLENHIIPCIEIL-RRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAIL-VNHGVPK  263 (449)
Q Consensus       186 ~lG~s~~~i~~il~~~P~iL~~s~~~~l~p~v~fL-~~~g~~~~~v~~~l~~~P~iL~~s~e~~l~~~v~~L-~~lGv~~  263 (449)
                      ++|++.+++++++.++|++|++|++ +++|+++|| .++|++.+++.+++.++|++++.+.++ ++++++++ +++|++.
T Consensus        85 ~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e~-~~~~v~~l~~~~G~s~  162 (270)
T 3m66_A           85 SKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEP-VKENMKVYRLELGFKH  162 (270)
T ss_dssp             HTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSHH-HHHHHHHHHHTSCCCH
T ss_pred             HcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechHH-HHHHHHHHHHHcCCCH
Confidence            9999999999999999999999998 599999999 579999999999999999999999998 99999975 6799999


Q ss_pred             HHHHHHHhhcCccceecchHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCHHHHHHHHHHHH-HcCCCHHHHHHHHhcC
Q 013135          264 SLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYM-NFGLTKDEVYSAFRRQ  342 (449)
Q Consensus       264 ~~i~~li~~~P~lL~~s~~~l~~~v~~l~~lG~~~~~~~~~~a~~~i~~~s~~~l~~k~~~l~-~lG~s~~ev~~~v~~~  342 (449)
                      ++|.+++.++|.++++|                                  .+++++|++|+. ++||+.++|.    ++
T Consensus       163 ~ei~~~v~~~P~il~~s----------------------------------~~~l~~k~~fL~~~mg~~~~~i~----~~  204 (270)
T 3m66_A          163 NEIQHMITRIPKMLTAN----------------------------------KMKLTETFDFVHNVMSIPHHIIV----KF  204 (270)
T ss_dssp             HHHHHHHHHCGGGGTSC----------------------------------HHHHHHHHHHHHTTSCCCHHHHH----HC
T ss_pred             HHHHHHHHhCChhheec----------------------------------HHHHHHHHHHHHHHhCCCHHHHH----hC
Confidence            99999999999998875                                  566777778886 7999999887    89


Q ss_pred             CcccccChHHHHhHHHHHHH
Q 013135          343 PMFMIVSEQKISKLMDCYVN  362 (449)
Q Consensus       343 P~iL~~S~e~l~~k~~fL~~  362 (449)
                      |++|+||.|+|+++++|+..
T Consensus       205 P~~l~~Sleri~pR~~~l~~  224 (270)
T 3m66_A          205 PQVFNTRLFKVKERHLFLTY  224 (270)
T ss_dssp             GGGGGSCHHHHHHHHHHHHH
T ss_pred             chHhhCCHHHHHHHHHHHHH
Confidence            99999999999999999886

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=6.9e-33  Score=276.65  Aligned_cols=274  Identities=14%  Similarity=0.188  Sum_probs=232.5

Q ss_pred             CChhhHHHHHHHcCCChHHHHHHHHhhhhhhcc---chhhHHHHHHHCCCChhhHhhHhhhCCceeecCcccchhhHHHH
Q 013135          107 DTLEPNLKLFKSLGITGANLAEMLNKEHRVLES---DAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEF  183 (449)
Q Consensus       107 ~~l~~~l~~L~~lG~~~~~l~~~i~~~P~lL~~---~l~~~l~fL~~lGl~~~~i~~il~~~P~lL~~~~e~~l~pkl~f  183 (449)
                      .+-..+++||.++|++.++   ++..+|.++..   +++++++||+++|++.++|++++.++|++|.+++ +++.|+++|
T Consensus        17 ~~~~~~v~~L~s~Gl~~~~---~~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~-~~l~p~l~f   92 (343)
T 3mva_O           17 LKNEDLLKNLLTMGVDIDM---ARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTP-ENLSKRWDL   92 (343)
T ss_dssp             ---CCHHHHHHHHTCCHHH---HHHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCH-HHHHHHHHH
T ss_pred             cccHHHHHHHHHcCCCHHH---HHHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCH-HHHHHHHHH
Confidence            3457899999999999665   46779999865   6789999999999999999999999999999996 689999999


Q ss_pred             HHHcCCChHHHHHHHHhCCcc-eeccccccchHHHHHHHHhcCChHHHHHHHHhCCcccccchhhhhHHHHHHHHhCCCC
Q 013135          184 FKSLGFAELQMAKFLSSQPYI-LERSLENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVP  262 (449)
Q Consensus       184 L~~lG~s~~~i~~il~~~P~i-L~~s~~~~l~p~v~fL~~~g~~~~~v~~~l~~~P~iL~~s~e~~l~~~v~~L~~lGv~  262 (449)
                      |+++|++++++++++.++|++ ++.+.++++.|+++||+++|++.+++.+++.++|+++++++++ +++++++|+++|++
T Consensus        93 L~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~-~~~~v~~L~~lgv~  171 (343)
T 3mva_O           93 WRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQAAGLS  171 (343)
T ss_dssp             HTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHH-HHHHHHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHH-hhHHHHHHHHhCCC
Confidence            999999999999999999995 4554334899999999999999999999999999999999999 59999999987764


Q ss_pred             ------hHHHHHHHhhcCccceecchHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCHHHHHHHHHHHH-HcCCCHHHH
Q 013135          263 ------KSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYM-NFGLTKDEV  335 (449)
Q Consensus       263 ------~~~i~~li~~~P~lL~~s~~~l~~~v~~l~~lG~~~~~~~~~~a~~~i~~~s~~~l~~k~~~l~-~lG~s~~ev  335 (449)
                            .+.|.+++.++|.+++.+                                  +++++++++|++ ++|++.+++
T Consensus       172 ~g~~~p~~~I~~il~~~P~iL~~s----------------------------------~~~i~~~v~fL~~~~G~~~~~~  217 (343)
T 3mva_O          172 LGHNDPADFVRKIIFKNPFILIQS----------------------------------TKRVKANIEFLRSTFNLNSEEL  217 (343)
T ss_dssp             TTCSCHHHHHHHHHHHCGGGGGSC----------------------------------HHHHHHHHHHHHHHSCCCHHHH
T ss_pred             cCCCcHHHHHHHHHHhCChHhcCC----------------------------------HHHHHHHHHHHHHHcCCCHHHH
Confidence                  778999999999998875                                  456667777777 588888899


Q ss_pred             HHHHhcC-CcccccChHHHHhHHHHHHH---hcCCChHHH----hhCCceeccCCCCcchhHHHHHHHHHHCCCCCCC-c
Q 013135          336 YSAFRRQ-PMFMIVSEQKISKLMDCYVN---KLSMEPLII----SKHPYLLLFSLEKRILPRCSVLQLLMSNKVITED-F  406 (449)
Q Consensus       336 ~~~v~~~-P~iL~~S~e~l~~k~~fL~~---~mg~~~~~i----~~~P~~L~~Sle~ri~pR~~~l~~L~~~Gl~~~~-~  406 (449)
                      ..++.+. |.++.++.+.++++++|+.+   ++|++.++|    .++|.+|++|.|+ |+|++.++   .+.|+...+ .
T Consensus       218 ~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~~~-l~~k~~fl---~~mg~~~~~i~  293 (343)
T 3mva_O          218 LVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKK-FNDKIDCL---MEENISISQII  293 (343)
T ss_dssp             HHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSCHHH-HHHHHHHH---HTTTCCHHHHH
T ss_pred             HHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhcccHHH-HHHHHHHH---HHcCCCHHHHH
Confidence            9999885 58999999999999999997   789998875    7999999999995 99999655   457764322 2


Q ss_pred             chhhhccccHHHHHHHH
Q 013135          407 SLTYMFKMTEKQFIERI  423 (449)
Q Consensus       407 ~l~~~l~~se~~F~~~~  423 (449)
                      ....++..|-++-..|+
T Consensus       294 ~~P~~l~~sleri~~R~  310 (343)
T 3mva_O          294 ENPRVLDSSISTLKSRI  310 (343)
T ss_dssp             HSGGGGGSCHHHHHHHH
T ss_pred             hCCHHHhcCHHHHHHHH
Confidence            35567777776666555

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=99.94  E-value=1.1e-26  Score=228.91  Aligned_cols=183  Identities=13%  Similarity=0.161  Sum_probs=169.0

Q ss_pred             ccchhhHHHHHHHCCCChhhHhhHhhhCCceeecCcccchhhHHHHHHHcCCChHHHHHHHHhCCcceeccccccchHHH
Q 013135          138 ESDAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCI  217 (449)
Q Consensus       138 ~~~l~~~l~fL~~lGl~~~~i~~il~~~P~lL~~~~e~~l~pkl~fL~~lG~s~~~i~~il~~~P~iL~~s~~~~l~p~v  217 (449)
                      ..+++.++.+|.++|+++++|++++.++|.++.    .++.+++.||..+|++.++|+++|.++|++|++|++ +|++++
T Consensus        43 ~~~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~----~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l  117 (335)
T 4fp9_B           43 SLELERVMSSLLDMGFSNAHINELLSVRRGASL----QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRS  117 (335)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHH
T ss_pred             cccHHHHHHHHHHCCCCHHHHHHHHHhCcccch----hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHH
Confidence            356889999999999999999999999999974    568899999999999999999999999999999987 699999


Q ss_pred             HHHHHhcCChHHHHHHHHhCCcccccchhhhhHHHHHHHH-hCCCChHHHHHHHhhcCccceecchHHHHHHHHHHhcCC
Q 013135          218 EILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILV-NHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGF  296 (449)
Q Consensus       218 ~fL~~~g~~~~~v~~~l~~~P~iL~~s~e~~l~~~v~~L~-~lGv~~~~i~~li~~~P~lL~~s~~~l~~~v~~l~~lG~  296 (449)
                      +||+++|++.+++.+++.++|++++++.++ ++.++.+|+ ++|++.++|.+|+.++|.+|.++                
T Consensus       118 ~fL~~lGl~~~~i~~ll~~~P~lL~~s~e~-i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S----------------  180 (335)
T 4fp9_B          118 SYLQKLGLGEGKLKRVLYCCPEIFTMRQQD-INDTVRLLKEKCLFTVQQVTKILHSCPSVLRED----------------  180 (335)
T ss_dssp             HHHHHTTCTTTTHHHHHHHCGGGGTSCHHH-HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC----------------
T ss_pred             HHHHHcCCCHHHHHHHHHhCchhhccChHH-HHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC----------------
Confidence            999999999999999999999999999998 999999986 59999999999999999999875                


Q ss_pred             CCChhHHHHHHHHHHhcCHHHHHHHHHHHH-HcCCCHHHHHHHHhcCCcccccChHHHHhHHHHHHHhcCC
Q 013135          297 DPTNLLFVLAIRSMAVMSKALWEKKLEAYM-NFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSM  366 (449)
Q Consensus       297 ~~~~~~~~~a~~~i~~~s~~~l~~k~~~l~-~lG~s~~ev~~~v~~~P~iL~~S~e~l~~k~~fL~~~mg~  366 (449)
                                        .++++.|++|+. +||++.++|.    + |++|+||.++|++++.||.. +|.
T Consensus       181 ------------------~e~L~~K~efLv~~Mgl~~~eIv----k-P~~l~ySLeRIkpRH~fL~~-lG~  227 (335)
T 4fp9_B          181 ------------------LGQLEYKFQYAYFRMGIKHPDIV----K-SEYLQYSLTKIKQRHIYLER-LGR  227 (335)
T ss_dssp             ------------------HHHHHHHHHHHHTTTCCCHHHHH----H-TTGGGSCHHHHHHHHHHHHH-HTS
T ss_pred             ------------------HHHHHHHHHHHHHHhCCCHHHcc----c-cchhhccHHHHHHHHHHHHH-cCC
Confidence                              567788888887 8999999987    3 99999999999999999997 576

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=99.37  E-value=1.1e-11  Score=104.44  Aligned_cols=180  Identities=14%  Similarity=0.162  Sum_probs=139.5

Q ss_pred             chHHHHHHHHhcCChHHHHHHHHhCCcccccchhhhhHHHHHHHHhCCCChHHHHHHHhhcCccceecchHHHHHHHHHH
Q 013135          213 IIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVK  292 (449)
Q Consensus       213 l~p~v~fL~~~g~~~~~v~~~l~~~P~iL~~s~e~~l~~~v~~L~~lGv~~~~i~~li~~~P~lL~~s~~~l~~~v~~l~  292 (449)
                      +...+.-+.-+|++++-+.-++++.|+++...... ++.+-.+|+.+|+....+.+++--||.++++....+.+.+..++
T Consensus        33 lldiisefillglnpepvcvvlkkspqllklpimq-mrkrssylqklglgegklkrvlyccpeiftmrqqdindtvrllk  111 (239)
T 4fzv_B           33 LLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQ-MRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLK  111 (239)
T ss_dssp             TTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHHH-HHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCceEEEecCCHHHhcChHHH-HHHHHHHHHHhCCCccchhhheecCcHHHHHHHhhHhHHHHHHH
Confidence            33444445556777777777788888888777776 77777888888888877777777788887776655555544433


Q ss_pred             hcCCCCChhHHHHHHHHHHhcCHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccccChHHHHhHHHHHHHhcCCChHHHh
Q 013135          293 KLGFDPTNLLFVLAIRSMAVMSKALWEKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLIIS  372 (449)
Q Consensus       293 ~lG~~~~~~~~~~a~~~i~~~s~~~l~~k~~~l~~lG~s~~ev~~~v~~~P~iL~~S~e~l~~k~~fL~~~mg~~~~~i~  372 (449)
                      +                                 ++-|+..++.+++..+|.++.-..-.+..|++|-.-.||+..-+|+
T Consensus       112 e---------------------------------kclftvqqvtkilhscpsvlredlgqleykfqyayfrmgikhpdiv  158 (239)
T 4fzv_B          112 E---------------------------------KCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIV  158 (239)
T ss_dssp             H---------------------------------HSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHHH
T ss_pred             H---------------------------------hHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcchh
Confidence            2                                 5678888888999999999999888999999999999999999999


Q ss_pred             hCCceeccCCCCcchhHHHHHHHHHH------CCCCC-CCcchhhhccccHHHHHHHHhhcCC
Q 013135          373 KHPYLLLFSLEKRILPRCSVLQLLMS------NKVIT-EDFSLTYMFKMTEKQFIERIVKKYE  428 (449)
Q Consensus       373 ~~P~~L~~Sle~ri~pR~~~l~~L~~------~Gl~~-~~~~l~~~l~~se~~F~~~~v~~~~  428 (449)
                      +. .||.||+. .|+.||-+++.|..      +|-.. .++-+.+++..||.+|+.+-.+..-
T Consensus       159 ks-eylqyslt-kikqrhiylerlgryqtpdkkgqtqipnpllkdilrvseaeflartactsv  219 (239)
T 4fzv_B          159 KS-EYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSV  219 (239)
T ss_dssp             HT-TGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCCSSCCCCHHHHHTSCHHHHHHHTSCSCH
T ss_pred             HH-HHHHHHHH-HHHHHHhHHHHhcccCCCCccCCccCCChHHHHHHHHhHHHHHHHHhcccH
Confidence            86 89999998 89999998888753      23211 3567899999999999999875543

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=98.85  E-value=2.5e-08  Score=83.99  Aligned_cols=150  Identities=19%  Similarity=0.260  Sum_probs=131.6

Q ss_pred             chhhHHHHHHHCCCChhhHhhHhhhCCceeecCcccchhhHHHHHHHcCCChHHHHHHHHhCCcceeccccccchHHHHH
Q 013135          140 DAYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEI  219 (449)
Q Consensus       140 ~l~~~l~fL~~lGl~~~~i~~il~~~P~lL~~~~e~~l~pkl~fL~~lG~s~~~i~~il~~~P~iL~~s~~~~l~p~v~f  219 (449)
                      .+-..+.-|.-+|++++.+.-++.+.|++|...+ -+++.+-.||..+|+....+.+++-.||.|+.+.- .++...+..
T Consensus        32 qlldiisefillglnpepvcvvlkkspqllklpi-mqmrkrssylqklglgegklkrvlyccpeiftmrq-qdindtvrl  109 (239)
T 4fzv_B           32 QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPI-MQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQ-QDINDTVRL  109 (239)
T ss_dssp             TTTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCH-HHHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCH-HHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCCceEEEecCCHHHhcChH-HHHHHHHHHHHHhCCCccchhhheecCcHHHHHHH-hhHhHHHHH
Confidence            3445666677799999999999999999999998 46999999999999999999999999999999984 479999999


Q ss_pred             HHH-hcCChHHHHHHHHhCCcccccchhhhhHHHHHHHH-hCCCChHHHHHHHhhcCccceecchHHHHHHHHHHhcCCC
Q 013135          220 LRR-VLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILV-NHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFD  297 (449)
Q Consensus       220 L~~-~g~~~~~v~~~l~~~P~iL~~s~e~~l~~~v~~L~-~lGv~~~~i~~li~~~P~lL~~s~~~l~~~v~~l~~lG~~  297 (449)
                      |++ +.++..++.+++..+|.++..++.. ++-++.+.- .+|+.+.+|.+     ...+.++..+++.+.-++.++|--
T Consensus       110 lkekclftvqqvtkilhscpsvlredlgq-leykfqyayfrmgikhpdivk-----seylqysltkikqrhiylerlgry  183 (239)
T 4fzv_B          110 LKEKCLFTVQQVTKILHSCPSVLREDLGQ-LEYKFQYAYFRMGIKHPDIVK-----SEYLQYSLTKIKQRHIYLERLGRY  183 (239)
T ss_dssp             HHHHSCCCHHHHHHHHHHCGGGGTSCTTH-HHHHHHHHHHTSCCCHHHHHH-----TTGGGSCHHHHHHHHHHHHHHTCC
T ss_pred             HHHhHHhhHHHHHHHHHhCcHHHHHHHhh-hhhhHhHHHHHccCCCcchhH-----HHHHHHHHHHHHHHHhHHHHhccc
Confidence            987 7899999999999999999999987 998888864 59999998765     356788889999999999988853

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}

Probab=93.58  E-value=0.65  Score=48.73  Aligned_cols=270  Identities=15%  Similarity=0.205  Sum_probs=135.0

Q ss_pred             HHHhcCCCHHHHHHhhcccccCCCcCHHHHHHHH----HhCCCCHHHHHHHHhhCCCCCCCCChhhHHHHHH-HcCCChH
Q 013135           50 LQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLL----RTHGLTRSQINNFVTKRPSGDLGDTLEPNLKLFK-SLGITGA  124 (449)
Q Consensus        50 L~~~~Gls~~~~~~~~~~~~~~s~~~~~~v~~~L----~~~G~~~~~i~~il~~~P~l~~~~~l~~~l~~L~-~lG~~~~  124 (449)
                      |...+|+|++++..+..+--  ...-++.|.+.+    +.+||+.++|-+|-..+---..-+.+...+..|. .-|++++
T Consensus       215 L~~~~~ls~~qVvaIAsn~g--GkqALeaV~~~lp~l~~~~gls~~qvVaIAsn~GGkQALeaV~~llp~L~~~~gls~~  292 (1047)
T 3ugm_A          215 LCQAHGLTPAQVVAIASHDG--GKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPD  292 (1047)
T ss_dssp             HHHSSCCCHHHHTTTTTSTT--HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHSSTTHHHHHHHHHHHSHHHHHHHCCCHH
T ss_pred             HhhhcCCCHHHHHHHhhccc--hHHHHHHHHHhhhhhhhccCCCHHHHHHHHhcCcchHHHHHHHHHhhhhhccccCCHH
Confidence            33346777777776643210  012234444433    3588888888777553110000011122222332 3688888


Q ss_pred             HHHHHHHhhhhhhccchhhHHHHH---H-HCCCChhhHhhHhhhCCceeecCcccchhhHHHHHH-HcCCChHHHHHHHH
Q 013135          125 NLAEMLNKEHRVLESDAYATVEFF---R-TNGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFK-SLGFAELQMAKFLS  199 (449)
Q Consensus       125 ~l~~~i~~~P~lL~~~l~~~l~fL---~-~lGl~~~~i~~il~~~P~lL~~~~e~~l~pkl~fL~-~lG~s~~~i~~il~  199 (449)
                      ++.++-+..-.-  .-++.+.+.+   . +.|++++||..|-..+-.-=..   +++...+--|. ..|++++++.+|-.
T Consensus       293 qvvaIAsn~GGk--QALetV~~llp~L~~~~gltp~qvVaIAsn~GGkQAL---e~V~~llpvL~~~~gls~~qvVaIAs  367 (1047)
T 3ugm_A          293 QVVAIASHGGGK--QALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL---ETVQRLLPVLCQAHGLTPDQVVAIAS  367 (1047)
T ss_dssp             HHHHHHSSTTHH--HHHHHHHHHHHHHHHHTCCCHHHHHHHHSSSSCHHHH---HHHHHHHHHHHTTSCCCHHHHHHHHS
T ss_pred             HHHHHHhcCchH--HHHHHHHHHHHHHHhhcCCCHHHheeecccCccHHHH---HHHHHHhhhhhhhccCCHHHhhhhhh
Confidence            887765321110  1133333222   2 4899999998877654421110   12333333444 47999999988766


Q ss_pred             hCCcceeccccccchHHHHHHHH-hcCChHHHHHHHHhCCcccccchhhhhHHHHHHHH-hCCCChHHHHHHHhhcCccc
Q 013135          200 SQPYILERSLENHIIPCIEILRR-VLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAILV-NHGVPKSLVVKLMLIQPRTL  277 (449)
Q Consensus       200 ~~P~iL~~s~~~~l~p~v~fL~~-~g~~~~~v~~~l~~~P~iL~~s~e~~l~~~v~~L~-~lGv~~~~i~~li~~~P~lL  277 (449)
                      ....--.  +| .+..-+--|.. .|++.++|.++-.. ..  ..-++. +..-...|. ++|+++.+|.+|-...-.- 
T Consensus       368 n~GGkQA--Le-~V~~llp~L~~~~gls~~~vvaiA~~-GG--~qALe~-V~~L~p~l~~~~glt~~qvv~IAsn~GGk-  439 (1047)
T 3ugm_A          368 NGGGKQA--LE-TVQRLLPVLCQAHGLTPDQVVAIASN-GG--KQALET-VQRLLPVLCQAHGLTPDQVVAIASHDGGK-  439 (1047)
T ss_dssp             STTHHHH--HH-HHHHHHHHHHTTSCCCHHHHHHHHHH-TH--HHHHHH-HHHHHHHHHTTSSCCHHHHHHHHSSTTTH-
T ss_pred             cCchHHH--HH-HHHHhhhhhhhhcCCCHHHHHHHhcc-cc--hhHHHH-HhhccchhhhhcCCCHHHhhhhhccCchH-
Confidence            5433111  11 23333333333 58888888877753 11  012333 333334444 5899999988764322110 


Q ss_pred             eecchHHHHHHHHHH-hcCCCCChhHHHHHHHHHHhcC-----HHHHHHHHHHHH-HcCCCHHHHHHHHhc
Q 013135          278 LQSTARLNKIIDEVK-KLGFDPTNLLFVLAIRSMAVMS-----KALWEKKLEAYM-NFGLTKDEVYSAFRR  341 (449)
Q Consensus       278 ~~s~~~l~~~v~~l~-~lG~~~~~~~~~~a~~~i~~~s-----~~~l~~k~~~l~-~lG~s~~ev~~~v~~  341 (449)
                       --.+.+.+.+-.|. .-|+++++..      .|.+..     -+.+..-...+. ..|||.+||..|...
T Consensus       440 -QALe~V~~llp~L~~~~glt~aqvV------aIAsn~GGkQALeaV~~llpvl~~~~gls~~qvvaiA~n  503 (1047)
T 3ugm_A          440 -QALETVQRLLPVLCQTHGLTPAQVV------AIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASN  503 (1047)
T ss_dssp             -HHHHHHHHHHHHHHTTSCCCHHHHH------HHSSSTTHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHSS
T ss_pred             -HHHHHHHHHhHHhhcccCCCHHHHH------HHHhcCcHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhc
Confidence             00133344444444 5677765532      122211     223333344455 589999999988743

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}

Probab=93.05  E-value=0.14  Score=53.51  Aligned_cols=16  Identities=19%  Similarity=0.387  Sum_probs=9.5

Q ss_pred             HHHhcCCCHHHHHHhh
Q 013135           50 LQKSCGFSLESAVSAS   65 (449)
Q Consensus        50 L~~~~Gls~~~~~~~~   65 (449)
                      |...+|||++++.++.
T Consensus       283 L~~~~gls~~qvvaIA  298 (1047)
T 3ugm_A          283 LCQAHGLTPDQVVAIA  298 (1047)
T ss_dssp             HHHHHCCCHHHHHHHH
T ss_pred             hhccccCCHHHHHHHH
Confidence            3344666666666664

>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}

Probab=93.02  E-value=0.47  Score=45.97  Aligned_cols=44  Identities=20%  Similarity=0.358  Sum_probs=27.6

Q ss_pred             HhcCCCHHHHHHhhcccccCCCcCHHHHHHHHHhCCCCHHHHHHHHhh
Q 013135           52 KSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRTHGLTRSQINNFVTK   99 (449)
Q Consensus        52 ~~~Gls~~~~~~~~~~~~~~s~~~~~~v~~~L~~~G~~~~~i~~il~~   99 (449)
                      ..+|.|.+++.++..+..    ..+..--+.|-++||+..+|..|-++
T Consensus         9 ~~lgys~~q~~k~k~~~~----s~va~~h~~l~~~g~t~~~i~~is~~   52 (463)
T 4hpz_A            9 RTLGYSQQQQEKIKPKVR----STVAQHHEALVGHGFTHAHIVALSQH   52 (463)
T ss_dssp             GGGTCCHHHHHHHCGGGH----HHHHHHHHHHHHTTCCHHHHHHHTTS
T ss_pred             HHhccCHHHHHHhhHHHH----HHHHHHHHHHHhcCCCHHHHHHhhcc
Confidence            467888888888865332    12233345566788888888765443

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=92.34  E-value=0.59  Score=38.21  Aligned_cols=50  Identities=18%  Similarity=0.294  Sum_probs=32.6

Q ss_pred             chHHHHHHhcCCCHHHHHHhhcccccCCCcCHHHHHHHHH------hCCCCHHHHHHHHhh
Q 013135           45 LTVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLR------THGLTRSQINNFVTK   99 (449)
Q Consensus        45 ~~v~~L~~~~Gls~~~~~~~~~~~~~~s~~~~~~v~~~L~------~~G~~~~~i~~il~~   99 (449)
                      ..|..|+ ++||+...+.++.+..-    .+++..++||.      +-|+++.++...+..
T Consensus        10 ~~v~~l~-~MGFp~~~~~kAl~~~g----~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~   65 (118)
T 4ae4_A           10 QCVETVV-NMGYSYECVLRAMKAAG----ANIEQILDYLFAHGQLCEKGFDPLLVEEALEM   65 (118)
T ss_dssp             HHHHHHH-HTTCCHHHHHHHHHHHC----SCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHH-HcCCCHHHHHHHHHHHC----cCHHHHHHHHHHhchhcccCCChhhhHHHHHh
Confidence            3566775 68888888888765332    36777777773      456666666555544

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=90.15  E-value=0.29  Score=48.29  Aligned_cols=41  Identities=10%  Similarity=0.177  Sum_probs=30.1

Q ss_pred             CCcCHHHHHHHHHhCCCCHHHHHHHHhhCCCCCCCCChhhHHHHHH
Q 013135           72 TTDKIDSVLKLLRTHGLTRSQINNFVTKRPSGDLGDTLEPNLKLFK  117 (449)
Q Consensus        72 s~~~~~~v~~~L~~~G~~~~~i~~il~~~P~l~~~~~l~~~l~~L~  117 (449)
                      +....+..++-|.++||+++++.+.++..     ..+....++||-
T Consensus       164 ~g~~~~~~i~~l~~MGf~~~~~~~AL~a~-----~nn~~~A~e~L~  204 (368)
T 1oqy_A          164 TGSEYETMLTEIMSMGYERERVVAALRAS-----YNNPHRAVEYLL  204 (368)
T ss_dssp             CTTTHHHHHHHHHTTTCCSHHHHHHHHHS-----CSSTTHHHHTTT
T ss_pred             CCcchHHHHHHHHHcCCCHHHHHHHHHHc-----CCCHHHHHHHHH
Confidence            34567888999999999999999988873     234555556553

>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}

Probab=88.92  E-value=4.3  Score=39.41  Aligned_cols=146  Identities=14%  Similarity=0.099  Sum_probs=69.0

Q ss_pred             HHHHhcCCCHHHHHHhhcccc-cC-CCcCHHHHHHHHHhCCCCHHHHHHHHhhCCCCCCCCChhhHHHHHHH--cCCChH
Q 013135           49 DLQKSCGFSLESAVSASEKLR-VD-TTDKIDSVLKLLRTHGLTRSQINNFVTKRPSGDLGDTLEPNLKLFKS--LGITGA  124 (449)
Q Consensus        49 ~L~~~~Gls~~~~~~~~~~~~-~~-s~~~~~~v~~~L~~~G~~~~~i~~il~~~P~l~~~~~l~~~l~~L~~--lG~~~~  124 (449)
                      -|. .+||+++++..++++.. +. -..+....+..|  .+++.++|-.+-..+-....-..+.+...-|..  +|++.+
T Consensus        35 ~l~-~~g~t~~~i~~is~~~~al~~va~~y~~l~aal--~~lt~~~iV~ia~~~~g~~Al~a~~~~~~~L~~~p~~l~~~  111 (463)
T 4hpz_A           35 ALV-GHGFTHAHIVALSQHPAALGTVAVKYQDMIAAL--PEATHEAIVGVGKQWSGACALEALLTVAGELRGPPLQLDTG  111 (463)
T ss_dssp             HHH-HTTCCHHHHHHHTTSTHHHHHHHTTHHHHHHHS--TTCCHHHHHHHHTSTTTTHHHHHHHHHHHHHHSTTTCCCHH
T ss_pred             HHH-hcCCCHHHHHHhhccHhHHHHHHHhhHHHHhhc--cccCHHHHHHHHhccchHHHHHHHHHHHHHhhcCccCCCHH
Confidence            354 59999999999987532 11 112233333333  667777777765553222111123333333433  578888


Q ss_pred             HHHHHHHhhhhhhc-cchhhHHHHHHH--CCCChhhHhhHhhhCCceeecCcccchhhHHHHHHH-cCCChHHHHHHHHh
Q 013135          125 NLAEMLNKEHRVLE-SDAYATVEFFRT--NGFSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKS-LGFAELQMAKFLSS  200 (449)
Q Consensus       125 ~l~~~i~~~P~lL~-~~l~~~l~fL~~--lGl~~~~i~~il~~~P~lL~~~~e~~l~pkl~fL~~-lG~s~~~i~~il~~  200 (449)
                      ++..+.. +-.--. ..+.....-|..  +|++++|+.+|-...-.-=.  + +.+.....-|+. .|+|++++.+|-+.
T Consensus       112 qiv~IA~-~Gg~~Aleav~~~~~~L~~apl~Lsp~qvVaIAsn~GGkqA--L-eaV~~llpvL~~a~~Ls~~qVVaIAsn  187 (463)
T 4hpz_A          112 QLLKIAK-RGGVTAVEVHHTWRNALTGAPLNLTPDQVVAIASNIGGKQA--L-ETVQRLLPVLCQDHGLTPQQVVAIASN  187 (463)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHTHHHHHSTTTCCCHHHHHHHHSSTTHHHH--H-HHHHHHHHHHHHHHCCCHHHHHHHHTS
T ss_pred             HHHHHHh-hCcHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHhcCccHHH--H-HHHHHHHHHHhhhcCCCHHHHHHHhhc
Confidence            8777765 211100 111122222332  56666666665433221000  0 112222333333 56666666665443


Q ss_pred             C
Q 013135          201 Q  201 (449)
Q Consensus       201 ~  201 (449)
                      +
T Consensus       188 ~  188 (463)
T 4hpz_A          188 G  188 (463)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=88.16  E-value=0.66  Score=32.17  Aligned_cols=31  Identities=23%  Similarity=0.345  Sum_probs=15.8

Q ss_pred             hhhhhccchhhHHHHHHHCCCChhhHhhHhh
Q 013135          133 EHRVLESDAYATVEFFRTNGFSDSQIKSITV  163 (449)
Q Consensus       133 ~P~lL~~~l~~~l~fL~~lGl~~~~i~~il~  163 (449)
                      .|.+-...+..+++||++-|++.++|...+.
T Consensus        22 dp~V~~sp~~~K~~FL~sKGLt~~EI~~Al~   52 (54)
T 3ff5_A           22 NSRVRQSPLATRRAFLKKKGLTDEEIDLAFQ   52 (54)
T ss_dssp             CTTGGGSCHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             ChhhhcCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            3444444455555555555555555554443

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=87.66  E-value=6.1  Score=32.07  Aligned_cols=22  Identities=5%  Similarity=0.069  Sum_probs=16.6

Q ss_pred             HHHHHHHhCCCCHHHHHHHHhh
Q 013135           78 SVLKLLRTHGLTRSQINNFVTK   99 (449)
Q Consensus        78 ~v~~~L~~~G~~~~~i~~il~~   99 (449)
                      ..++-|.++||+...+.+.+..
T Consensus        10 ~~v~~l~~MGFp~~~~~kAl~~   31 (118)
T 4ae4_A           10 QCVETVVNMGYSYECVLRAMKA   31 (118)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHH
Confidence            4566777888888888877766

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=87.59  E-value=0.54  Score=32.62  Aligned_cols=28  Identities=21%  Similarity=0.296  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013135          315 KALWEKKLEAYMNFGLTKDEVYSAFRRQ  342 (449)
Q Consensus       315 ~~~l~~k~~~l~~lG~s~~ev~~~v~~~  342 (449)
                      ...+..|++||.+-|++.+||..++.|.
T Consensus        27 ~sp~~~K~~FL~sKGLt~~EI~~Al~rs   54 (54)
T 3ff5_A           27 QSPLATRRAFLKKKGLTDEEIDLAFQQS   54 (54)
T ss_dssp             GSCHHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence            3457889999999999999999988763

>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A

Probab=83.82  E-value=0.96  Score=33.03  Aligned_cols=33  Identities=21%  Similarity=0.362  Sum_probs=18.4

Q ss_pred             hhhhhhccchhhHHHHHHHCCCChhhHhhHhhh
Q 013135          132 KEHRVLESDAYATVEFFRTNGFSDSQIKSITVK  164 (449)
Q Consensus       132 ~~P~lL~~~l~~~l~fL~~lGl~~~~i~~il~~  164 (449)
                      +.|.+-...+..+++||++-|++.++|...+.+
T Consensus        26 qdp~V~~sp~~~K~~FL~sKGLt~eEI~~Al~r   58 (70)
T 2w84_A           26 QNSRVRQSPLATRRAFLKKKGLTDEEIDMAFQQ   58 (70)
T ss_dssp             CSTTGGGSCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             CChhhhhCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            344444455555666666666666666555544

>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}

Probab=83.30  E-value=8.1  Score=33.06  Aligned_cols=127  Identities=9%  Similarity=0.051  Sum_probs=69.6

Q ss_pred             cCHHHHHHHHHhCCCCHHHHHHHHhhCCCCCCCCChhhHHHHHHHcCC-ChHHHHHHHHhhhhhhccchhhHHHHHHHCC
Q 013135           74 DKIDSVLKLLRTHGLTRSQINNFVTKRPSGDLGDTLEPNLKLFKSLGI-TGANLAEMLNKEHRVLESDAYATVEFFRTNG  152 (449)
Q Consensus        74 ~~~~~v~~~L~~~G~~~~~i~~il~~~P~l~~~~~l~~~l~~L~~lG~-~~~~l~~~i~~~P~lL~~~l~~~l~fL~~lG  152 (449)
                      .....+.+-|...|++++.|..+                ++.|.+.|+ +...+.....+.-.--........+-|+.-|
T Consensus        32 ~s~~EL~~KL~~kg~~~e~Ie~v----------------l~~l~~~g~ldD~rfA~~~v~~~~~~~~G~~~I~~eL~~KG   95 (162)
T 3dfg_A           32 HSKKELNRKLQARGIEPEAAQAA----------------VERLAGEGWQDDVRFAASVVRNRASSGYGPLHIRAELGTHG   95 (162)
T ss_dssp             CCHHHHHHHHHHTTCCHHHHHHH----------------HHHHHHTTSCCHHHHHHHHHHHHHTTTCCHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHhcCCCHHHHHHH----------------HHHHHHcCCCCHHHHHHHHHHHHHHccccHHHHHHHHHHcC
Confidence            44556677778888887777664                445777774 5555554443321111123445567788899


Q ss_pred             CChhhHhhHhhhCCceeecCcccchhhHHHHHHHcCCChHHHHHHHHhCCcceeccccccchHHHHHHHHhcCChHHHHH
Q 013135          153 FSDSQIKSITVKRPKFYVYNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILERSLENHIIPCIEILRRVLDTDENVLK  232 (449)
Q Consensus       153 l~~~~i~~il~~~P~lL~~~~e~~l~pkl~fL~~lG~s~~~i~~il~~~P~iL~~s~~~~l~p~v~fL~~~g~~~~~v~~  232 (449)
                      ++.+.|...+.....    +.   ..--...+..             ++..--..+ ...-...+.||.+-|++.+.|..
T Consensus        96 I~~~~I~~al~~~~~----de---~e~a~~l~~K-------------k~~~~~~~~-~~~k~K~~~~L~rrGF~~~~I~~  154 (162)
T 3dfg_A           96 LDSDAVSAAMATFEG----DW---TENALDLIRR-------------RFGEDGPVD-LAQRRKAADLLARRGFDGNSIRL  154 (162)
T ss_dssp             CCHHHHHHHHTTCCS----CH---HHHHHHHHHH-------------HHCTTCCCS-HHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             CCHHHHHHHHHhCcH----hH---HHHHHHHHHH-------------hcCCCCCCC-HHHHHHHHHHHHHCCCCHHHHHH
Confidence            999999888876531    11   1111111111             111100111 11233456788888888888877


Q ss_pred             HHHhC
Q 013135          233 AIRAG  237 (449)
Q Consensus       233 ~l~~~  237 (449)
                      ++...
T Consensus       155 ~l~~~  159 (162)
T 3dfg_A          155 ATRFD  159 (162)
T ss_dssp             HTTC-
T ss_pred             HHhcC
Confidence            76543

>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}

Probab=81.54  E-value=10  Score=32.93  Aligned_cols=77  Identities=13%  Similarity=0.130  Sum_probs=48.8

Q ss_pred             CcCHHHHHHHHHhCCCCHHHHHHHHhhCCCCCCCCChhhHHHHHHHcCC-ChHHHHHHHHhhhhhh-ccchhhHHHHHHH
Q 013135           73 TDKIDSVLKLLRTHGLTRSQINNFVTKRPSGDLGDTLEPNLKLFKSLGI-TGANLAEMLNKEHRVL-ESDAYATVEFFRT  150 (449)
Q Consensus        73 ~~~~~~v~~~L~~~G~~~~~i~~il~~~P~l~~~~~l~~~l~~L~~lG~-~~~~l~~~i~~~P~lL-~~~l~~~l~fL~~  150 (449)
                      ...-..+.+-|...|++++.|..+                ++.|.+.|+ +...++....+.-.-- ........+-|+.
T Consensus        32 ~~S~~EL~~KL~~kg~~~~~ie~v----------------l~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~~I~~eL~~   95 (177)
T 3e3v_A           32 LRTRKEVEDKLRSLDIHEDYISEI----------------INKLIDLDLINDKNYAESYVRTMMNTSDKGPKVIKLNLSK   95 (177)
T ss_dssp             CCCHHHHHTTSGGGTCCHHHHHHH----------------HHHHHHTTSSCHHHHHHHHHHHHHHHCCCCHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHcCCCHHHHHHH----------------HHHHHHcCCCCHHHHHHHHHHHHHHcccccHHHHHHHHHH
Confidence            345556666677777777766654                555777774 5566655544332222 1334455677888


Q ss_pred             CCCChhhHhhHhhhC
Q 013135          151 NGFSDSQIKSITVKR  165 (449)
Q Consensus       151 lGl~~~~i~~il~~~  165 (449)
                      -|++.+.|...+...
T Consensus        96 KGI~~~~I~~al~~~  110 (177)
T 3e3v_A           96 KGIDDNIAEDALILY  110 (177)
T ss_dssp             TTCCHHHHHHHHTTS
T ss_pred             cCCCHHHHHHHHHhC
Confidence            999999988888643

>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A

Probab=80.05  E-value=1.3  Score=32.38  Aligned_cols=28  Identities=21%  Similarity=0.304  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013135          315 KALWEKKLEAYMNFGLTKDEVYSAFRRQ  342 (449)
Q Consensus       315 ~~~l~~k~~~l~~lG~s~~ev~~~v~~~  342 (449)
                      ...+..|++||++-|++.+||..++++.
T Consensus        32 ~sp~~~K~~FL~sKGLt~eEI~~Al~ra   59 (70)
T 2w84_A           32 QSPLATRRAFLKKKGLTDEEIDMAFQQS   59 (70)
T ss_dssp             GSCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence            3457899999999999999999998874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00