Citrus Sinensis ID: 013143

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45

MKFRFSNKVSVFPHYLRLEYDHHCRQFSTSFLRKLQTNPQVRASFSGGSNNSQGNTFLLPGATLATLLMLGALHARRMYDDRKVEEAREKGIEIEFKPDAKASFLRLLPLRSISRIWGFMTSVEYPVWMRPYVYKAWARAFHSNLEEAALPLGEYASLREFFVRTLKQGSRPIDHDPHCLVSPVDGIVLRVGELKGVGAKIEQVKGFSYSVSSLLGSSSFLPMIEEGDMHEQSGEQESTPTEKTKKSWWSISLASPRVRDTATTRPVKGLYYCVIYLKPGDYHRIHSPVDWNVLVRRHFSGRLFPLNERATRTIRNLYFENERVVLEGMWQEGYLAMAAVGATNIGSIELVIEPELRTNQPRKKLLHSEPPEERVYEPQGVGMMLKKGDEVGAFNMGSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRWQESCNERASF

ccccccccccccccccccccccccccccccHHHcccccccccccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHcccccccccccccEEcccccccccccccccccccccccEEEEEEEEEccccEEEEEccccEEHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccEEEEcccEEEEEEEEcccccccccHHHHHHcccccccEEEEEEEEEEccccEEEEEEEcEEEEEEEEEEcccccccccccccccccccccEEEcccccccccccccEEEEEEcccEEEEEEccccccccccccccccccccccccEEEcccccccccccccccccc

ccccccccccEEccccccccccccccccccHccccccccccccHHcccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEHHccHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccHHHHHccHHHcccHHHHHHHccccccccccccccEEEEccccEEEEEEEEEccccEEEEEEcEEEcHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccEEccccccEEEEEEEcccccccccHHHHHHccccEEEccEEEEEEccccccEEEEEEcccEEEEEEEEEccccccccccccccccccccHHHcccccccEEcccccccccEccccEEEEEEcccccccccccccccEEEEEccccEEEEccccccccccHHHHHcc

mkfrfsnkvsvfphylrleydhhcRQFSTSFLRklqtnpqvrasfsggsnnsqgntfllpgATLATLLMLGALHARRMYDDRKVEEAREKGieiefkpdakasflrlLPLRSISRIWGFMTsveypvwmrpyVYKAWARAFHSNLEEaalplgeyaSLREFFVRTLkqgsrpidhdphclvspvdgivLRVGELKGVGAKIEQVKGFSYSVSSLlgsssflpmieegdmheqsgeqestptektkkswwsislasprvrdtattrpvkGLYYCVIYlkpgdyhrihspvdwnvlvrrhfsgrlfplneraTRTIRNLYFENERVVLEGMWQEGYLAMAAVGATnigsielviepelrtnqprkkllhseppeervyepqgvgmmlkkgdevgafnmgSTVVLVFqaptikspnrgdnsnfrfcikrgdkirvgeglgrwqESCNERASF

mkfrfsnkvsvfphYLRLEYDHHCRQFSTSFLRKLQTNPQVRASFSGGSNNSQGNTFLLPGATLATLLMLGALHARRMYDDRKVEEAREkgieiefkpdakasflRLLPLRSISRIWGFMTSVEYPVWMRPYVYKAWARAFHSNLEEAALPLGEYASLREFFVRTLKQgsrpidhdphclVSPVDGIVLRVGELKGVGAKIEQVKGFSYSVSSLLGSSSFLPMIEEGDMheqsgeqestptektkkswwsislasprvrdtattrpvkgLYYCVIYLKPGDYHRIHSPVDWNVLVRRHFSgrlfplneratrtirnlYFENERVVLEGMWQEGYLAMAAVGATNIGSIELViepelrtnqprkkllhseppeervyepQGVGMMLKKGDEVGAFNMGSTVVLVFQaptikspnrgdnsnfrfCIKRgdkirvgeglgrwqescnerasf

MKFRFSNKVSVFPHYLRLEYDHHCRQFSTSFLRKLQTNPQVRASFsggsnnsqgnTFllpgatlatllmlgalhaRRMYDDRKVEEAREKGIEIEFKPDAKASFlrllplrsisriWGFMTSVEYPVWMRPYVYKAWARAFHSNLEEAALPLGEYASLREFFVRTLKQGSRPIDHDPHCLVSPVDGIVLRVGELKGVGAKIEQVKgfsysvssllgsssflPMIEEGDMHEQSGEQESTPTEKTKKSWWSISLASPRVRDTATTRPVKGLYYCVIYLKPGDYHRIHSPVDWNVLVRRHFSGRLFPLNERATRTIRNLYFENERVVLEGMWQEGYLAMAAVGATNIGSIELVIEPELRTNQPRKKLLHSEPPEERVYEPQGVGMMLKKGDEVGAFNMGSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRWQESCNERASF

******NKVSVFPHYLRLEYDHHCRQFSTSFLRKL*******************NTFLLPGATLATLLMLGALHARRMYDDRKVE***EKGIEIEFKPDAKASFLRLLPLRSISRIWGFMTSVEYPVWMRPYVYKAWARAFHSNLEEAALPLGEYASLREFFVRTLKQGSRPIDHDPHCLVSPVDGIVLRVGELKGVGAKIEQVKGFSYSVSSLLG*******************************WWSISLASPRVRDTATTRPVKGLYYCVIYLKPGDYHRIHSPVDWNVLVRRHFSGRLFPLNERATRTIRNLYFENERVVLEGMWQEGYLAMAAVGATNIGSIELVIE******************************MLKKGDEVGAFNMGSTVVLVFQAPTIK******NSNFRFCIKRGDKIRVGEGLGRW**********

********VS*********************************************TFLLPGATLATLLMLGALHARRMYDDRK**********IEFKPDAKASFLRLLPLRSISRIWGFMTSVEYPVWMRPYVYKAWARAFHSNLEEAALPLGEYASLREFFVRTLKQGSRPIDHDPHCLVSPVDGIVLRVGELKGVGAKIEQVKGFSYSVSSLLGSSSFLPMI****************************LASPRVRDTATTRPVKGLYYCVIYLKPGDYHRIHSPVDWNVLVRRHFSGRLFPLNERATRTIRNLYFENERVVLEGMWQEGYLAMAAVGATNIGSIELVIEPELRTNQPRKKLLHSEPPEERVYEPQGVGMMLKKGDEVGAFNMGSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLG************

********VSVFPHYLRLEYDHHCRQFSTSFLRKLQTNPQVRASFSGGSNNSQGNTFLLPGATLATLLMLGALHARRMYDDRKVEEAREKGIEIEFKPDAKASFLRLLPLRSISRIWGFMTSVEYPVWMRPYVYKAWARAFHSNLEEAALPLGEYASLREFFVRTLKQGSRPIDHDPHCLVSPVDGIVLRVGELKGVGAKIEQVKGFSYSVSSLLGSSSFLPMIEEG********************WWSISLASPRVRDTATTRPVKGLYYCVIYLKPGDYHRIHSPVDWNVLVRRHFSGRLFPLNERATRTIRNLYFENERVVLEGMWQEGYLAMAAVGATNIGSIELVIEPELRTNQPRKKLLHSEPPEERVYEPQGVGMMLKKGDEVGAFNMGSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRWQ*********

*K**FSNKVSVFPHYLRLEYDH*****************************SQGNTFLLPGATLATLLMLGALHARRMYDDRKVEEAREKGIEIEFKPDAKASFLRLLPLRSISRIWGFMTSVEYPVWMRPYVYKAWARAFHSNLEEAALPLGEYASLREFFVRTLKQGSRPIDHDPHCLVSPVDGIVLRVGELKGVGAKIEQVKGFSYSVSSLLGS*********************************************T*RPVKGLYYCVIYLKPGDYHRIHSPVDWNVLVRRHFSGRLFPLNERATRTIRNLYFENERVVLEGMWQEGYLAMAAVGATNIGSIELVIEPELRTNQPRKKLLHSEPPEERVYEPQGVGMMLKKGDEVGAFNMGSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGL*************

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		449	2.2.26 [Sep-21-2011]
P27465		409	Phosphatidylserine decarb	yes	no	0.734	0.806	0.372	7e-59
O14333		437	Phosphatidylserine decarb	yes	no	0.839	0.862	0.369	7e-58
P39006		500	Phosphatidylserine decarb	yes	no	0.712	0.64	0.361	7e-58
Q5R8I8		409	Phosphatidylserine decarb	yes	no	0.728	0.799	0.369	2e-57
Q9UG56		409	Phosphatidylserine decarb	yes	no	0.743	0.816	0.372	2e-57
Q8BSF4		406	Phosphatidylserine decarb	yes	no	0.734	0.812	0.370	3e-57
Q58DH2		416	Phosphatidylserine decarb	yes	no	0.683	0.737	0.379	2e-56
Q10949		377	Phosphatidylserine decarb	yes	no	0.681	0.811	0.326	2e-43
Q9UTB5		516	Phosphatidylserine decarb	no	no	0.432	0.375	0.412	6e-35
Q3J754		306	Phosphatidylserine decarb	yes	no	0.554	0.813	0.321	3e-29

>sp\|P27465\|PISD_CRIGR Phosphatidylserine decarboxylase proenzyme OS=Cricetulus griseus GN=PISD PE=1 SV=2	Back alignment and function desciption

 Score =  228 bits (581), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 196/370 (52%), Gaps = 40/370 (10%)

Query: 71  GALHARRMYDDRKVEEAREKGIEI--EFKPDAKASFLRLLPLRSISRIWGFMTSVEYPVW 128
           G     R Y+  + ++  + G+EI  +     + +  + +P R +SR WG +  VE P W
Sbjct: 75  GGYAGYRQYEKYRDQKLEKLGLEIPPKLASHWEVALYKSVPTRLLSRAWGRLNQVELPYW 134

Query: 129 MRPYVYKAWARAFHSNLEEAAL-PLGEYASLREFFVRTLKQGSRPIDHDPHCLVSPVDGI 187
           +R  VY  +   F  N+ EAA+  L  Y +L EFF R LK  +RP+    H ++SP DG 
Sbjct: 135 LRRPVYSLYIWTFGVNMTEAAVEDLHHYRNLSEFFRRKLKPQARPVC-GLHSVISPSDGK 193

Query: 188 VLRVGELKGVGAKIEQVKGFSYSVSSLLGSSSFLPMIEEGDMHEQSGEQESTPTEKTKKS 247
           +L  G++K    ++EQVKG +YS+ S LG  ++              E  S P   ++ S
Sbjct: 194 ILTFGQVKN--CEVEQVKGVTYSLESFLGPRTYT-------------EDLSFPPASSRDS 238

Query: 248 WWSISLASPRVRDTATTRPVKGLYYCVIYLKPGDYHRIHSPVDWNVLVRRHFSGRLFPLN 307
           +          R+   TR    LY+CVIYL PGDYH  HSP DW V  RRHF G L  +N
Sbjct: 239 F----------RNQLVTREGNELYHCVIYLAPGDYHCFHSPTDWTVSHRRHFPGSLMSVN 288

Query: 308 ERATRTIRNLYFENERVVLEGMWQEGYLAMAAVGATNIGSIELVIEPELRTNQPRKKLLH 367
               R I+ L+  NERVVL G W+ G+ ++ AVGATN+GSI +  + +L TN PR     
Sbjct: 289 PGMARWIKELFCHNERVVLSGDWKHGFFSLTAVGATNVGSIRIYFDQDLHTNSPRYS-KG 347

Query: 368 SEPPEERVYEPQGVGMMLKKGDEVGAFNMGSTVVLVFQAPTIKSPNRGDNSNFRFCIKRG 427
           S      V      G+ ++KG+ +G FN+GST+VL+F+AP           +F F +K G
Sbjct: 348 SYNDLSFVTHANKEGIPMRKGEHLGEFNLGSTIVLIFEAP----------KDFNFRLKAG 397

Query: 428 DKIRVGEGLG 437
            KIR GE LG
Sbjct: 398 QKIRFGEALG 407

Cricetulus griseus (taxid: 10029)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 6EC: 5

>sp\|O14333\|PSD1_SCHPO Phosphatidylserine decarboxylase proenzyme 1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=psd1 PE=3 SV=4	Back alignment and function description

>sp\|P39006\|PSD1_YEAST Phosphatidylserine decarboxylase proenzyme 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PSD1 PE=1 SV=1	Back alignment and function description

>sp\|Q5R8I8\|PISD_PONAB Phosphatidylserine decarboxylase proenzyme OS=Pongo abelii GN=PISD PE=2 SV=1	Back alignment and function description

>sp\|Q9UG56\|PISD_HUMAN Phosphatidylserine decarboxylase proenzyme OS=Homo sapiens GN=PISD PE=2 SV=4	Back alignment and function description

>sp\|Q8BSF4\|PISD_MOUSE Phosphatidylserine decarboxylase proenzyme OS=Mus musculus GN=Pisd PE=2 SV=1	Back alignment and function description

>sp\|Q58DH2\|PISD_BOVIN Phosphatidylserine decarboxylase proenzyme OS=Bos taurus GN=PISD PE=2 SV=1	Back alignment and function description

>sp\|Q10949\|PISD_CAEEL Phosphatidylserine decarboxylase proenzyme OS=Caenorhabditis elegans GN=psd-1 PE=3 SV=2	Back alignment and function description

>sp\|Q9UTB5\|PSD2_SCHPO Phosphatidylserine decarboxylase proenzyme 2, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=psd2 PE=3 SV=1	Back alignment and function description

>sp\|Q3J754\|PSD_NITOC Phosphatidylserine decarboxylase proenzyme OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=psd PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		449
224074169		444	predicted protein [Populus trichocarpa]	0.982	0.993	0.738	0.0
359495988		436	PREDICTED: LOW QUALITY PROTEIN: phosphat	0.968	0.997	0.713	0.0
358248866		435	uncharacterized protein LOC100811372 [Gl	0.966	0.997	0.708	0.0
297744390		427	unnamed protein product [Vitis vinifera]	0.948	0.997	0.697	1e-176
449469379		442	PREDICTED: phosphatidylserine decarboxyl	0.973	0.988	0.680	1e-173
255579633		420	phosphatidylserine decarboxylase, putati	0.924	0.988	0.678	1e-168
350534910		445	phosphatidylserine decarboxylase [Solanu	0.979	0.988	0.677	1e-166
42566885		453	phosphatidylserine decarboxylase [Arabid	0.973	0.964	0.638	1e-165
297800446		451	predicted protein [Arabidopsis lyrata su	0.973	0.968	0.640	1e-163
357482097		545	Phosphatidylserine decarboxylase proenzy	0.975	0.803	0.584	1e-156

>gi\|224074169\|ref\|XP_002304284.1\| predicted protein [Populus trichocarpa] gi\|222841716\|gb\|EEE79263.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/443 (73%), Positives = 378/443 (85%), Gaps = 2/443 (0%)

Query: 1   MKFRFSNKVSVFPHYLRLEYDHHCR-QFSTSFLRKLQTNPQVRASFSGGSNNSQGNTFLL 59
           MKFR+SNK+ +F H LRL + HH R QF TS L+++QT  QVRASF+G S N +GN FL+
Sbjct: 1   MKFRYSNKLPIFAHSLRLSHQHHQRRQFFTSLLKRVQTASQVRASFNGSSGNPRGNIFLV 60

Query: 60  PGATLATLLMLGALHARRMYDDRKVEEAREKGIEIEFKPDAKASFLRLLPLRSISRIWGF 119
           PGAT+ATLLMLGALHARR+YDD+KVEEAREKGIE EF+PD KASFLR+LPLRSISR++G 
Sbjct: 61  PGATVATLLMLGALHARRLYDDKKVEEAREKGIEFEFQPDHKASFLRMLPLRSISRLFGS 120

Query: 120 MTSVEYPVWMRPYVYKAWARAFHSNLEEAALPLGEYASLREFFVRTLKQGSRPIDHDPHC 179
           +TSVE PVWMRP+VY+AWARAFHSNLEE ALPL  YASLREFFVRTLK+GSRPID DPHC
Sbjct: 121 LTSVELPVWMRPHVYRAWARAFHSNLEEVALPLENYASLREFFVRTLKEGSRPIDPDPHC 180

Query: 180 LVSPVDGIVLRVGELKGVGAKIEQVKGFSYSVSSLLGSSSFLPMIEEGDMHEQSGEQEST 239
           LVSPVDG VLR GELKG G  IEQVKGFSYSVSSLLG+SS LP+I EGDMH++S EQ+  
Sbjct: 181 LVSPVDGTVLRFGELKGSGTMIEQVKGFSYSVSSLLGASSLLPVITEGDMHKESSEQQGN 240

Query: 240 PTEKTKKSWWSISLASPRVRDTATTRPVKGLYYCVIYLKPGDYHRIHSPVDWNVLVRRHF 299
             EK KKSWW  SLASP++RDT +  P KGLYYCVIYL PGDYH IHSP DWNVLVRRHF
Sbjct: 241 LKEKNKKSWWRFSLASPKIRDTVSACPAKGLYYCVIYLSPGDYHLIHSPADWNVLVRRHF 300

Query: 300 SGRLFPLNERATRTIRNLYFENERVVLEGMWQEGYLAMAAVGATNIGSIELVIEPELRTN 359
           SG LFP+NERATRTIRNLY +NERVVLEG+W+ G++A+AA+GATNIGSI+L IEPEL+TN
Sbjct: 301 SGHLFPVNERATRTIRNLYVQNERVVLEGLWEGGFMAIAAIGATNIGSIKLFIEPELQTN 360

Query: 360 QPRKKLLHSEPPEERVYEPQGVGMMLKKGDEVGAFNMGSTVVLVFQAPTIKS-PNRGDNS 418
           Q R+K+L+SEPP+ERVY  +GVG  LKKG EV AFN+GSTVVLVFQAPT+K   NR  +S
Sbjct: 361 QRRQKILNSEPPDERVYALEGVGKSLKKGAEVAAFNLGSTVVLVFQAPTLKMLQNRDSSS 420

Query: 419 NFRFCIKRGDKIRVGEGLGRWQE 441
            FRF I+RGD++RVGE LGRW +
Sbjct: 421 EFRFSIRRGDRVRVGEALGRWHD 443

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359495988\|ref\|XP_002266091.2\| PREDICTED: LOW QUALITY PROTEIN: phosphatidylserine decarboxylase proenzyme 1, mitochondrial-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|358248866\|ref\|NP_001240209.1\| uncharacterized protein LOC100811372 [Glycine max] gi\|255644593\|gb\|ACU22799.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|297744390\|emb\|CBI37364.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449469379\|ref\|XP_004152398.1\| PREDICTED: phosphatidylserine decarboxylase proenzyme-like [Cucumis sativus] gi\|449488662\|ref\|XP_004158135.1\| PREDICTED: phosphatidylserine decarboxylase proenzyme-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255579633\|ref\|XP_002530657.1\| phosphatidylserine decarboxylase, putative [Ricinus communis] gi\|223529790\|gb\|EEF31726.1\| phosphatidylserine decarboxylase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|350534910\|ref\|NP_001234166.1\| phosphatidylserine decarboxylase [Solanum lycopersicum] gi\|29465780\|gb\|AAM11886.1\| phosphatidylserine decarboxylase [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|42566885\|ref\|NP_193403.2\| phosphatidylserine decarboxylase [Arabidopsis thaliana] gi\|29468598\|gb\|AAO38842.1\| phosphatidylserine decarboxylase [Arabidopsis thaliana] gi\|109946625\|gb\|ABG48491.1\| At4g16700 [Arabidopsis thaliana] gi\|332658388\|gb\|AEE83788.1\| phosphatidylserine decarboxylase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297800446\|ref\|XP_002868107.1\| predicted protein [Arabidopsis lyrata subsp. lyrata] gi\|297313943\|gb\|EFH44366.1\| predicted protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|357482097\|ref\|XP_003611334.1\| Phosphatidylserine decarboxylase proenzyme [Medicago truncatula] gi\|355512669\|gb\|AES94292.1\| Phosphatidylserine decarboxylase proenzyme [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		449
TAIR\|locus:2129046		453	PSD1 "phosphatidylserine decar	0.973	0.964	0.552	1.1e-128
ZFIN\|ZDB-GENE-061215-46		426	pisd "phosphatidylserine decar	0.394	0.415	0.431	4.2e-53
UNIPROTKB\|E2RN04		409	PISD "Uncharacterized protein"	0.374	0.410	0.452	2.9e-52
UNIPROTKB\|F1RLV4		410	PISD "Uncharacterized protein"	0.374	0.409	0.452	7.7e-52
UNIPROTKB\|Q9UG56		409	PISD "Phosphatidylserine decar	0.374	0.410	0.446	1.3e-51
UNIPROTKB\|F1PHK8		374	PISD "Uncharacterized protein"	0.374	0.449	0.452	2.6e-51
SGD\|S000005113		500	PSD1 "Phosphatidylserine decar	0.351	0.316	0.461	3.3e-51
UNIPROTKB\|F1NIN3		373	PISD "Uncharacterized protein"	0.363	0.436	0.448	4.2e-51
MGI\|MGI:2445114		406	Pisd "phosphatidylserine decar	0.385	0.426	0.440	5.4e-51
UNIPROTKB\|Q58DH2		416	PISD "Phosphatidylserine decar	0.374	0.403	0.446	8.7e-51

TAIR\|locus:2129046 PSD1 "phosphatidylserine decarboxylase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1263 (449.7 bits), Expect = 1.1e-128, P = 1.1e-128
 Identities = 252/456 (55%), Positives = 305/456 (66%)

Query:     1 MKFRFSNKVSVFPHYLRLE-YDHHCRQFSTSFLRKLQTNPQ-VRASFXXXXXXXXXXT-- 56
             MK RF   V     Y  L  + H  R+  +SFL  +++N    RAS              
Sbjct:     1 MKPRFPQNVYFLARYSYLRRFQHSQRRTFSSFLNNIRSNYSGARASPLGGSSGAGAGAGG 60

Query:    57 ----------FXXXXXXXXXXXXXXXXXXRRMYDDRKVEEAREKGIEIEFKPDAKASFXX 106
                       F                  RR+Y+D+K+EE REKGIE+EF PD KASF  
Sbjct:    61 GGTGDSKGNAFLVPGATMATILMLGALHARRLYEDKKIEEKREKGIELEFHPDIKASFLG 120

Query:   107 XXXXXXXXXXWGFMTSVEYPVWMRPYVYKAWARAFHSNLEEAALPLGEYASLREFFVRTL 166
                       WG   S+E PVWMRPY YKAWARAFHSNLEEAALPL EY SL++FFVR+L
Sbjct:   121 VLPLRSISRAWGSFMSLEIPVWMRPYAYKAWARAFHSNLEEAALPLEEYTSLQDFFVRSL 180

Query:   167 KQGSRPIDHDPHCLVSPVDGIVLRVGELKGVGAKIEQVKXXXXXXXXXXXXXXXXPMIEE 226
             K+G RPID DP CLVSPVDG VLR GELKG    IEQVK                PM  E
Sbjct:   181 KEGCRPIDPDPCCLVSPVDGTVLRFGELKGNRGMIEQVKGHSYSVPALLGNNSLLPMEPE 240

Query:   227 GDMHEQSGEQESTPTEKTKKSWWSISLASPRVRDTATTRPVKGLYYCVIYLKPGDYHRIH 286
             G    ++  +E    +K+ KSW  +SLASP++R+  +  P+KGLYYCVIYLKPGDYHRIH
Sbjct:   241 G----KNESKEEAVGDKSDKSWLRVSLASPKLRENVSASPMKGLYYCVIYLKPGDYHRIH 296

Query:   287 SPVDWNVLVRRHFSGRLFPLNERATRTIRNLYFENERVVLEGMWQEGYLAMAAVGATNIG 346
             SP DWN  VRRHF+GRLFP+NERATRTIRNLY ENERVVLEG+W+EG++A+AAVGATNIG
Sbjct:   297 SPADWNATVRRHFAGRLFPVNERATRTIRNLYVENERVVLEGIWKEGFMALAAVGATNIG 356

Query:   347 SIELVIEPELRTNQPRKKLLHSEPPEERVYEPQGVGMMLKKGDEVGAFNMGSTVVLVFQA 406
             SIEL IEPELRTN+P+KKL  +EPPEERVY+P+G+G+ L+KG EV  FNMGSTVVL+FQA
Sbjct:   357 SIELFIEPELRTNKPKKKLFPTEPPEERVYDPEGLGLRLEKGKEVAVFNMGSTVVLIFQA 416

Query:   407 PTIKSPN-RGDNSNFRFCIKRGDKIRVGEGLGRWQE 441
             PT  +P     +S++RFC+K+GD++RVG+ LGRW+E
Sbjct:   417 PTANTPEGSSSSSDYRFCVKQGDRVRVGQALGRWKE 452

GO:0004609 "phosphatidylserine decarboxylase activity" evidence=IEA;ISS;IMP

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008654 "phospholipid biosynthetic process" evidence=IEA

ZFIN\|ZDB-GENE-061215-46 pisd "phosphatidylserine decarboxylase" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RN04 PISD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RLV4 PISD "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9UG56 PISD "Phosphatidylserine decarboxylase proenzyme" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PHK8 PISD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

SGD\|S000005113 PSD1 "Phosphatidylserine decarboxylase of the mitochondrial inner membrane" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NIN3 PISD "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:2445114 Pisd "phosphatidylserine decarboxylase" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q58DH2 PISD "Phosphatidylserine decarboxylase proenzyme" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O14333	PSD1_SCHPO	4, ., 1, ., 1, ., 6, 5	0.3691	0.8396	0.8627	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	4.1.1.65	0.824
3rd Layer	4.1.1	0.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		449
PLN02938		428	PLN02938, PLN02938, phosphatidylserine decarboxyla	0.0
pfam02666		201	pfam02666, PS_Dcarbxylase, Phosphatidylserine deca	3e-66
TIGR00163		238	TIGR00163, PS_decarb, phosphatidylserine decarboxy	2e-60
PTZ00403		353	PTZ00403, PTZ00403, phosphatidylserine decarboxyla	2e-56
PRK03934		265	PRK03934, PRK03934, phosphatidylserine decarboxyla	1e-54
PRK00044		288	PRK00044, psd, phosphatidylserine decarboxylase; R	4e-50
COG0688		239	COG0688, Psd, Phosphatidylserine decarboxylase [Li	9e-42
PRK03140		259	PRK03140, PRK03140, phosphatidylserine decarboxyla	2e-41
PRK00723		297	PRK00723, PRK00723, phosphatidylserine decarboxyla	5e-27
PRK09629		610	PRK09629, PRK09629, bifunctional thiosulfate sulfu	2e-24
PLN02964		644	PLN02964, PLN02964, phosphatidylserine decarboxyla	1e-16

>gnl\|CDD\|178526 PLN02938, PLN02938, phosphatidylserine decarboxylase	Back alignment and domain information

 Score =  720 bits (1861), Expect = 0.0
 Identities = 311/445 (69%), Positives = 361/445 (81%), Gaps = 22/445 (4%)

Query: 1   MKFRFSNKVSVFPHYLRLEYDHHCRQFSTSFLRKLQTNPQVRASFSGGSNNSQGNTFLLP 60
           MKFR S+K+ +   Y  L + HH +                RAS +GGS +SQGN+FLLP
Sbjct: 1   MKFRVSSKLPLLARYSLLRHQHHHQS--------------SRASVNGGSGSSQGNSFLLP 46

Query: 61  GATLATLLMLGALHARRMYDDRKVEEAREKGIEIEFKPDAKASFLRLLPLRSISRIWGFM 120
           GAT+ATLLMLGALHARR+Y+D+KVEEAREKGIE EF PD KASFLRLLPLRSISR+WG +
Sbjct: 47  GATVATLLMLGALHARRLYEDKKVEEAREKGIEPEFSPDTKASFLRLLPLRSISRLWGSL 106

Query: 121 TSVEYPVWMRPYVYKAWARAFHSNLEEAALPLGEYASLREFFVRTLKQGSRPIDHDPHCL 180
           TSVE PVWMRPYVYKAWARAFHSNLEEAALPL EYASLREFFVR+LK+G+RPID DP+CL
Sbjct: 107 TSVELPVWMRPYVYKAWARAFHSNLEEAALPLEEYASLREFFVRSLKEGARPIDPDPNCL 166

Query: 181 VSPVDGIVLRVGELKGVGAKIEQVKGFSYSVSSLLGSSSFLPMIEEGDMHEQSGEQESTP 240
           VSPVDGIVLR GELKG G  IEQVKGFSYSVS+LLG++S LPM  EG       ++E T 
Sbjct: 167 VSPVDGIVLRFGELKGPGTMIEQVKGFSYSVSALLGANSLLPMTAEGKEE----KEEETL 222

Query: 241 TEKTKKSWWSISLASPRVRDTATTRPVKGLYYCVIYLKPGDYHRIHSPVDWNVLVRRHFS 300
            +K+ KSW  +SLASP++RD  +  P+KGL+YCVIYL PGDYHRIHSP DWN+ VRRHFS
Sbjct: 223 KDKSSKSWLRVSLASPKLRDPVSASPMKGLFYCVIYLGPGDYHRIHSPSDWNIEVRRHFS 282

Query: 301 GRLFPLNERATRTIRNLYFENERVVLEGMWQEGYLAMAAVGATNIGSIELVIEPELRTNQ 360
           GRLFP+NERATRTIRNLY ENERVVLEG WQEG++AMAAVGATNIGSIEL IEPELRTN+
Sbjct: 283 GRLFPVNERATRTIRNLYVENERVVLEGEWQEGFMAMAAVGATNIGSIELFIEPELRTNR 342

Query: 361 PRKKLLHSEPPEERVYEPQGVGMMLKKGDEVGAFNMGSTVVLVFQAPTIKSP----NRGD 416
           P+KK+ +SEPPEERVYEP+G G+ LKKGDEV  FN+GSTVVLVF+AP    P        
Sbjct: 343 PKKKIFNSEPPEERVYEPEGCGLCLKKGDEVAVFNLGSTVVLVFEAPVEVEPLFKVLDQS 402

Query: 417 NSNFRFCIKRGDKIRVGEGLGRWQE 441
           +S+FRFC+++GD+IRVG+ LGRW E
Sbjct: 403 SSDFRFCVRKGDRIRVGQALGRWME 427

Length = 428

>gnl\|CDD\|217173 pfam02666, PS_Dcarbxylase, Phosphatidylserine decarboxylase	Back alignment and domain information

>gnl\|CDD\|232850 TIGR00163, PS_decarb, phosphatidylserine decarboxylase precursor	Back alignment and domain information

>gnl\|CDD\|173594 PTZ00403, PTZ00403, phosphatidylserine decarboxylase; Provisional	Back alignment and domain information

>gnl\|CDD\|235177 PRK03934, PRK03934, phosphatidylserine decarboxylase; Provisional	Back alignment and domain information

>gnl\|CDD\|234591 PRK00044, psd, phosphatidylserine decarboxylase; Reviewed	Back alignment and domain information

>gnl\|CDD\|223760 COG0688, Psd, Phosphatidylserine decarboxylase [Lipid metabolism]	Back alignment and domain information

>gnl\|CDD\|179544 PRK03140, PRK03140, phosphatidylserine decarboxylase; Provisional	Back alignment and domain information

>gnl\|CDD\|179097 PRK00723, PRK00723, phosphatidylserine decarboxylase; Provisional	Back alignment and domain information

>gnl\|CDD\|104071 PRK09629, PRK09629, bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional	Back alignment and domain information

>gnl\|CDD\|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		449
PLN02938		428	phosphatidylserine decarboxylase	100.0
KOG2420		382	consensus Phosphatidylserine decarboxylase [Lipid	100.0
PTZ00403		353	phosphatidylserine decarboxylase; Provisional	100.0
PRK00044		288	psd phosphatidylserine decarboxylase; Reviewed	100.0
PRK03934		265	phosphatidylserine decarboxylase; Provisional	100.0
PRK09629		610	bifunctional thiosulfate sulfurtransferase/phospha	100.0
PRK03140		259	phosphatidylserine decarboxylase; Provisional	100.0
PRK00723		297	phosphatidylserine decarboxylase; Provisional	100.0
TIGR00163		238	PS_decarb phosphatidylserine decarboxylase precurs	100.0
PLN02964		644	phosphatidylserine decarboxylase	100.0
PF02666		202	PS_Dcarbxylase: Phosphatidylserine decarboxylase;	100.0
KOG2419		975	consensus Phosphatidylserine decarboxylase [Lipid	100.0
COG0688		239	Psd Phosphatidylserine decarboxylase [Lipid metabo	100.0
TIGR00164		189	PS_decarb_rel phosphatidylserine decarboxylase pre	100.0
PRK05305		206	phosphatidylserine decarboxylase; Provisional	100.0
cd00210		124	PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose s	95.57
PRK09439		169	PTS system glucose-specific transporter subunit; P	95.36
PRK10255		648	PTS system N-acetyl glucosamine specific transport	93.82
PRK08225		70	acetyl-CoA carboxylase biotin carboxyl carrier pro	91.41
TIGR00830		121	PTBA PTS system, glucose subfamily, IIA component.	90.75
TIGR01995		610	PTS-II-ABC-beta PTS system, beta-glucoside-specifi	90.54
PRK07051		80	hypothetical protein; Validated	88.74
PF00358		132	PTS_EIIA_1: phosphoenolpyruvate-dependent sugar ph	88.25
PRK09824		627	PTS system beta-glucoside-specific transporter sub	88.17

>PLN02938 phosphatidylserine decarboxylase	Back alignment and domain information

Probab=100.00  E-value=2.2e-117  Score=915.31  Aligned_cols=423  Identities=74%  Similarity=1.222  Sum_probs=382.2

Q ss_pred             CccccCCCCcccccccccccccccccchhhhhhhccCCccccccccCCCCCcccceEeecchhHHHHHHHHHhhhhhhhh
Q 013143            1 MKFRFSNKVSVFPHYLRLEYDHHCRQFSTSFLRKLQTNPQVRASFSGGSNNSQGNTFLLPGATLATLLMLGALHARRMYD   80 (449)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~   80 (449)
                      ||||+++++|+|+++.+++|+|+ ++.             .+++++|+++++|||.|+|||||++||+|||++|+||+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   66 (428)
T PLN02938          1 MKFRVSSKLPLLARYSLLRHQHH-HQS-------------SRASVNGGSGSSQGNSFLLPGATVATLLMLGALHARRLYE   66 (428)
T ss_pred             CCCCCCCCcccccccCcchhhcc-hhc-------------ccccccCCCCCCCCceeecCChhHHHHHHHHHHHHHHHHH
Confidence            99999999999999998887765 331             2257889999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcccceecchHHHHHHhhcchHHHHHHHhhhhcCCCCcccchhhHHHHHHHhCCCcccccCCccccccccc
Q 013143           81 DRKVEEAREKGIEIEFKPDAKASFLRLLPLRSISRIWGFMTSVEYPVWMRPYVYKAWARAFHSNLEEAALPLGEYASLRE  160 (449)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~LP~r~iSr~~G~~~~~~lP~~lr~~i~k~y~~~fginl~E~~~pl~~Y~Sln~  160 (449)
                      ++|+++++++|++++|+++|++.++++||++++||+||+++++++|.|+|+++|++|++.|+|||+|+++|+++|+||||
T Consensus        67 ~~~~~~~~~~g~~~~~~~~~~~~ll~lLP~r~iSrl~G~~a~~~~P~~lr~~i~~~fa~~f~inl~E~~~p~~~Y~Sfnd  146 (428)
T PLN02938         67 DKKVEEAREKGIEPEFSPDTKASFLRLLPLRSISRLWGSLTSVELPVWMRPYVYKAWARAFHSNLEEAALPLEEYASLRE  146 (428)
T ss_pred             HHHHHHHHhcCcccccCCHHHHHHHHHccHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhCcCHHHhhcchhhCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeccCCCCCCcCCCCCCeeEecCCcEEEEEeeeeCCCceEEeeeCCccchhhhcCCCCCCCCcccCccccccCcccCCC
Q 013143          161 FFVRTLKQGSRPIDHDPHCLVSPVDGIVLRVGELKGVGAKIEQVKGFSYSVSSLLGSSSFLPMIEEGDMHEQSGEQESTP  240 (449)
Q Consensus       161 FF~R~LKpgaRPId~d~~~lVSPaDGkVl~~G~I~~~~~~ieqVKG~~YSl~~LLG~~~~~~~~~~~~~~~~~~~~~~~~  240 (449)
                      ||+|+||||+||||+|+++|||||||+|+++|+|+++++.++||||++|||++|||.+..++...++.+..+    ++..
T Consensus       147 FFtRkLKpgaRPid~d~~~iVSPaDG~v~~~g~I~~~~~~~~qVKG~~YSL~~LLG~~~~~~~~~~~~~~~~----~~~~  222 (428)
T PLN02938        147 FFVRSLKEGARPIDPDPNCLVSPVDGIVLRFGELKGPGTMIEQVKGFSYSVSALLGANSLLPMTAEGKEEKE----EETL  222 (428)
T ss_pred             hheeccCCCCCcCCCCCCeEEeccCCceEEeeeecCCCceEEEecCCcccHHHHcCCCcccccccccccchh----hccc
Confidence            999999999999999999999999999999999986555788999999999999997654333222222111    2345


Q ss_pred             cccccccccccccCCccccCcccccccCCeEEEEEEECCCCceeeeeccCcEEEEEEEecCceecCChHHHhhcCCcccc
Q 013143          241 TEKTKKSWWSISLASPRVRDTATTRPVKGLYYCVIYLKPGDYHRIHSPVDWNVLVRRHFSGRLFPLNERATRTIRNLYFE  320 (449)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~gg~~~vIYLsP~DYHR~HsPv~g~v~~~rh~~G~L~sVnp~~~~~~~~LF~~  320 (449)
                      .|++.++||+++++++|.+|...+++++||+||||||||+||||||||+||+|++++||||+||||||.+++++++||++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~ViYLsP~DYHR~HsP~dg~v~~~rhipG~L~sVnp~~~~~i~~LF~~  302 (428)
T PLN02938        223 KDKSSKSWLRVSLASPKLRDPVSASPMKGLFYCVIYLGPGDYHRIHSPSDWNIEVRRHFSGRLFPVNERATRTIRNLYVE  302 (428)
T ss_pred             cccccchhhhhhhccccccccccccccCCcEEEEEEeCccccceEeecCCcEEEEEEEcCCcccccCHHHHhhCCCcccc
Confidence            67778899999999999998878889999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEEEEecCeeEEEEEecceecCeeEEeecCccccCCccccccCCCCCCceecccCCCCceeecccEeeeeecCCEE
Q 013143          321 NERVVLEGMWQEGYLAMAAVGATNIGSIELVIEPELRTNQPRKKLLHSEPPEERVYEPQGVGMMLKKGDEVGAFNMGSTV  400 (449)
Q Consensus       321 NERvvl~g~~~~G~~a~v~VGAtnVGsI~i~~d~~l~TN~~~~~~~~~~~~~~~~y~~~~~G~~l~KGeE~G~F~lGSTV  400 (449)
                      ||||||+++|++|+|+||+|||||||||+++||++|+||.++.....++++.+++|+....|..++||||||+|+|||||
T Consensus       303 NERvVl~g~w~~G~~a~v~VGAtnVGsI~~~~d~~l~TN~~~~~~~~~~~~~~~~Y~~~~~g~~l~KGeE~G~F~lGSTV  382 (428)
T PLN02938        303 NERVVLEGEWQEGFMAMAAVGATNIGSIELFIEPELRTNRPKKKIFNSEPPEERVYEPEGCGLCLKKGDEVAVFNLGSTV  382 (428)
T ss_pred             ceEEEEEeecCCceEEEEEEeeeEEEEEEEEeccccccCCcccccccccccceeecccccCCceeccccEeeeecCCCeE
Confidence            99999999999999999999999999999999999999998766556677889999766568999999999999999999


Q ss_pred             EEEeeCCCCC----CCCCCCCCCceeeeeCCCEEEccceeeeecc
Q 013143          401 VLVFQAPTIK----SPNRGDNSNFRFCIKRGDKIRVGEGLGRWQE  441 (449)
Q Consensus       401 VLvFea~~~~----~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~~~  441 (449)
                      |||||+|...    +.++..+.+|+|++++||+|||||+||++.+
T Consensus       383 VLvFEap~~~~~~~~~~~~~~~~~~~~l~~G~~Vk~Gq~LG~~~~  427 (428)
T PLN02938        383 VLVFEAPVEVEPLFKVLDQSSSDFRFCVRKGDRIRVGQALGRWME  427 (428)
T ss_pred             EEEEeCCcccccccccccccccCccccccCCCEEEcchhhccccc
Confidence            9999999642    1235556689999999999999999998864

>KOG2420 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]	Back alignment and domain information

>PTZ00403 phosphatidylserine decarboxylase; Provisional	Back alignment and domain information

>PRK00044 psd phosphatidylserine decarboxylase; Reviewed	Back alignment and domain information

>PRK03934 phosphatidylserine decarboxylase; Provisional	Back alignment and domain information

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional	Back alignment and domain information

>PRK03140 phosphatidylserine decarboxylase; Provisional	Back alignment and domain information

>PRK00723 phosphatidylserine decarboxylase; Provisional	Back alignment and domain information

>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor	Back alignment and domain information

>PLN02964 phosphatidylserine decarboxylase	Back alignment and domain information

>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria	Back alignment and domain information

>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]	Back alignment and domain information

>COG0688 Psd Phosphatidylserine decarboxylase [Lipid metabolism]	Back alignment and domain information

>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein	Back alignment and domain information

>PRK05305 phosphatidylserine decarboxylase; Provisional	Back alignment and domain information

>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit	Back alignment and domain information

>PRK09439 PTS system glucose-specific transporter subunit; Provisional	Back alignment and domain information

>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional	Back alignment and domain information

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated	Back alignment and domain information

>TIGR00830 PTBA PTS system, glucose subfamily, IIA component	Back alignment and domain information

>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component	Back alignment and domain information

>PRK07051 hypothetical protein; Validated	Back alignment and domain information

>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria	Back alignment and domain information

>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		449
2gpr_A		154	Glucose-permease IIA component; phosphotransferase	97.92
1f3z_A		161	EIIA-GLC, glucose-specific phosphocarrier; phospho	97.65
1ax3_A		162	Iiaglc, glucose permease IIA domain; phosphotransf	97.57
1iyu_A		79	E2P, dihydrolipoamide acetyltransferase component	83.43
1z6h_A		72	Biotin/lipoyl attachment protein; solution structu	83.42

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1	Back alignment and structure

Probab=97.92  E-value=1.4e-05  Score=72.42  Aligned_cols=107  Identities=12%  Similarity=0.178  Sum_probs=68.5

Q ss_pred             EEEECCCCceeeeeccCcEEEEEEEecCceecCChHHHhhcCCcccceeEEEEEEEecCeeEEEEEecceecCeeEEeec
Q 013143          274 VIYLKPGDYHRIHSPVDWNVLVRRHFSGRLFPLNERATRTIRNLYFENERVVLEGMWQEGYLAMAAVGATNIGSIELVIE  353 (449)
Q Consensus       274 vIYLsP~DYHR~HsPv~g~v~~~rh~~G~L~sVnp~~~~~~~~LF~~NERvvl~g~~~~G~~a~v~VGAtnVGsI~i~~d  353 (449)
                      .+.+.|.| |.++||++|+|....  |                     +|.++.++++.|.-.++-||-   +...+   
T Consensus        37 Giai~p~~-~~v~AP~~G~V~~v~--~---------------------t~HAigi~~~~G~evLiHiGi---dTv~l---   86 (154)
T 2gpr_A           37 GFAINPKS-NDFHAPVSGKLVTAF--P---------------------TKHAFGIQTKSGVEILLHIGL---DTVSL---   86 (154)
T ss_dssp             EEEEEESS-SEEECSSCEEEEECC--T---------------------TCSEEEEECTTSCEEEEECSS---SGGGG---
T ss_pred             eEEEEeCC-CcEECCCCeEEEEEc--c---------------------CCeEEEEEcCCCCEEEEEECc---chhhc---
Confidence            56788889 999999999997532  1                     466777788788766667772   22211   


Q ss_pred             CccccCCccccccCCCCCCceecc-cCCCCceeecccEeeeeec------C-C--EEEEEeeCCCCCCCCCCCCCCceee
Q 013143          354 PELRTNQPRKKLLHSEPPEERVYE-PQGVGMMLKKGDEVGAFNM------G-S--TVVLVFQAPTIKSPNRGDNSNFRFC  423 (449)
Q Consensus       354 ~~l~TN~~~~~~~~~~~~~~~~y~-~~~~G~~l~KGeE~G~F~l------G-S--TVVLvFea~~~~~~d~~~~~~~~~~  423 (449)
                           |..             .|+ ....|+.+++||.++.|.+      | |  |.|++-. ...          -...
T Consensus        87 -----~G~-------------gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t~vvvtn-~~~----------~~~~  137 (154)
T 2gpr_A           87 -----DGN-------------GFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTN-NGG----------KTLE  137 (154)
T ss_dssp             -----TTC-------------SEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEE-CSS----------CCCS
T ss_pred             -----CCC-------------ceEEEEcCCCEEcCCCEEEEECHHHHHhcCCCCeEEEEEEC-CCc----------ceEE
Confidence                 100             011 1467999999999999984      4 2  4555555 432          1122


Q ss_pred             eeCCCEEEccceeeee
Q 013143          424 IKRGDKIRVGEGLGRW  439 (449)
Q Consensus       424 v~~G~kVk~Gq~LG~~  439 (449)
                      ...+..|+.|+.|..+
T Consensus       138 ~~~~~~v~~g~~~~~~  153 (154)
T 2gpr_A          138 IVKMGEVKQGDVVAIL  153 (154)
T ss_dssp             CBCCEEECTTCEEEEE
T ss_pred             EccCceEcCCCEEEEe
Confidence            3345678888887654

PyMOL of 2gpr

>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A	Back alignment and structure

>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A	Back alignment and structure

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A	Back alignment and structure

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		449
d2gpra_		154	Glucose permease IIa domain, IIa-glc {Mycoplasma c	94.58
d1gpra_		158	Glucose permease IIa domain, IIa-glc {Bacillus sub	94.47
d2f3ga_		150	Glucose-specific factor III (glsIII) {Escherichia	93.39
d1iyua_		79	Lipoyl domain of dihydrolipoamide acetyltransferas	86.44
d1qjoa_		80	Lipoyl domain of dihydrolipoamide acetyltransferas	82.32
d1gjxa_		81	Lipoyl domain of dihydrolipoamide acetyltransferas	80.16

>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}	Back information, alignment and structure

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Mycoplasma capricolum [TaxId: 2095]

Probab=94.58  E-value=0.03  Score=48.38  Aligned_cols=102  Identities=13%  Similarity=0.214  Sum_probs=59.5

Q ss_pred             CCCceeeeeccCcEEEEEEEecCceecCChHHHhhcCCcccceeEEEEEEEecCeeEEEEEecceecCeeEEeecCcccc
Q 013143          279 PGDYHRIHSPVDWNVLVRRHFSGRLFPLNERATRTIRNLYFENERVVLEGMWQEGYLAMAAVGATNIGSIELVIEPELRT  358 (449)
Q Consensus       279 P~DYHR~HsPv~g~v~~~rh~~G~L~sVnp~~~~~~~~LF~~NERvvl~g~~~~G~~a~v~VGAtnVGsI~i~~d~~l~T  358 (449)
                      |.| +.+.||++|+|...                     |.  .+-++-++++-|.-.++=||.-   .+.+        
T Consensus        42 P~~-~~v~AP~dG~I~~i---------------------~~--T~HAigi~t~~G~eiLIHiGid---TV~L--------   86 (154)
T d2gpra_          42 PKS-NDFHAPVSGKLVTA---------------------FP--TKHAFGIQTKSGVEILLHIGLD---TVSL--------   86 (154)
T ss_dssp             ESS-SEEECSSCEEEEEC---------------------CT--TCSEEEEECTTSCEEEEECSSS---GGGG--------
T ss_pred             ecC-CEEEEecCeEEEEE---------------------CC--CCcEEEEEeCCCCEEEEEEccc---cccc--------
Confidence            555 57889999999641                     11  1234444666676667777652   2211        


Q ss_pred             CCccccccCCCCCCceecc-cCCCCceeecccEeeeeec------C-C--EEEEEeeCCCCCCCCCCCCCCceeeeeCCC
Q 013143          359 NQPRKKLLHSEPPEERVYE-PQGVGMMLKKGDEVGAFNM------G-S--TVVLVFQAPTIKSPNRGDNSNFRFCIKRGD  428 (449)
Q Consensus       359 N~~~~~~~~~~~~~~~~y~-~~~~G~~l~KGeE~G~F~l------G-S--TVVLvFea~~~~~~d~~~~~~~~~~v~~G~  428 (449)
                      |..             -|+ ....|+.+++||.+..|.+      | |  |.|++.....           ....+....
T Consensus        87 ~G~-------------gF~~~v~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vvitn~~~-----------~~~~~~~~g  142 (154)
T d2gpra_          87 DGN-------------GFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTNNGG-----------KTLEIVKMG  142 (154)
T ss_dssp             TTC-------------SEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEECSS-----------CCCSCBCCE
T ss_pred             CCc-------------eeEEEecCCCEEcCCCEEEEEcHHHHHhcCCCCceEEEEEcCCC-----------ceEEecccC
Confidence            110             011 1357999999999999975      3 3  4555544321           222333445


Q ss_pred             EEEccceeeee
Q 013143          429 KIRVGEGLGRW  439 (449)
Q Consensus       429 kVk~Gq~LG~~  439 (449)
                      .|+.||.|..+
T Consensus       143 ~V~~Gd~i~~i  153 (154)
T d2gpra_         143 EVKQGDVVAIL  153 (154)
T ss_dssp             EECTTCEEEEE
T ss_pred             cCcCCCEEEEe
Confidence            78999988754

PyMOL of d2gpra_

>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}	Back information, alignment and structure